Query         023754
Match_columns 277
No_of_seqs    130 out of 438
Neff          3.1 
Searched_HMMs 46136
Date          Fri Mar 29 06:24:22 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023754hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 COG5201 SKP1 SCF ubiquitin lig  99.8 1.1E-21 2.3E-26  167.5   6.0   62   18-79     90-151 (158)
  2 KOG1724 SCF ubiquitin ligase,   99.8 1.5E-21 3.3E-26  168.2   6.1   69   12-80     84-157 (162)
  3 PF01466 Skp1:  Skp1 family, di  99.8 1.6E-21 3.4E-26  147.8   5.3   63   17-79     10-72  (78)
  4 smart00512 Skp1 Found in Skp1   96.7 0.00066 1.4E-08   53.3   1.5   23   13-35     77-104 (104)
  5 KOG3433 Protein involved in me  88.3    0.52 1.1E-05   43.2   3.6   39   26-69    160-200 (203)
  6 COG5124 Protein predicted to b  87.3    0.44 9.6E-06   43.6   2.5   40   26-70    164-205 (209)
  7 PHA02790 Kelch-like protein; P  80.1     1.8 3.9E-05   42.4   3.5   34   18-51     88-121 (480)
  8 PHA03098 kelch-like protein; P  79.9     2.3   5E-05   41.2   4.2   39   18-56     73-111 (534)
  9 PHA02713 hypothetical protein;  79.5     2.5 5.3E-05   42.5   4.3   43   18-60     91-133 (557)
 10 smart00225 BTB Broad-Complex,   76.0     1.5 3.3E-05   30.3   1.3   26   18-43     65-90  (90)
 11 PF03962 Mnd1:  Mnd1 family;  I  61.5     8.1 0.00018   34.3   3.0   43   22-69    143-187 (188)
 12 PF00651 BTB:  BTB/POZ domain;   58.2      13 0.00028   27.7   3.2   29   20-48     81-109 (111)
 13 KOG4441 Proteins containing BT  54.4      11 0.00024   38.5   2.9   32   18-49    102-133 (571)
 14 PF09278 MerR-DNA-bind:  MerR,   53.6      23 0.00049   25.1   3.7   38   52-103    14-51  (65)
 15 PF15063 TC1:  Thyroid cancer p  53.4     8.9 0.00019   30.8   1.7   43   43-85     27-69  (79)
 16 PLN03083 E3 UFM1-protein ligas  46.4      11 0.00024   40.9   1.6   31  224-254   511-542 (803)
 17 PF14384 DUF4415:  Domain of un  43.6      22 0.00047   26.3   2.4   26  225-250    34-59  (62)
 18 PF03131 bZIP_Maf:  bZIP Maf tr  43.5      57  0.0012   25.6   4.9   42   49-98      5-46  (92)
 19 KOG2002 TPR-containing nuclear  42.7      23  0.0005   39.3   3.3    7  122-128   882-888 (1018)
 20 KOG2716 Polymerase delta-inter  41.9      31 0.00067   32.2   3.6   36   19-54     74-109 (230)
 21 PF05553 DUF761:  Cotton fibre   39.0      29 0.00063   24.2   2.3   26  224-251     3-28  (38)
 22 PRK05365 malonic semialdehyde   36.8      27 0.00058   29.9   2.2   35   26-70    131-165 (195)
 23 PRK11053 dihydropteridine redu  36.7      28  0.0006   30.2   2.3   36   23-68    147-183 (217)
 24 cd00167 SANT 'SWI3, ADA2, N-Co  34.9      35 0.00076   21.3   2.0   21   43-63     22-42  (45)
 25 KOG2422 Uncharacterized conser  34.4      28  0.0006   37.1   2.3   42  204-246   149-193 (665)
 26 cd02148 Nitroreductase_5 Nitro  34.1      26 0.00056   29.7   1.7   35   26-70    124-158 (185)
 27 PF03656 Pam16:  Pam16;  InterP  34.1      23 0.00049   30.3   1.3   38   47-84     49-88  (127)
 28 smart00717 SANT SANT  SWI3, AD  34.0      38 0.00082   21.4   2.1   21   43-63     24-44  (49)
 29 KOG4682 Uncharacterized conser  33.3      38 0.00082   34.8   3.0   49   17-68    137-185 (488)
 30 PF00249 Myb_DNA-binding:  Myb-  32.5      45 0.00098   22.7   2.4   32   26-62     12-44  (48)
 31 PF13518 HTH_28:  Helix-turn-he  29.7      71  0.0015   21.2   3.0   22   44-65      4-25  (52)
 32 PF12556 CobS_N:  Cobaltochelat  27.3      34 0.00074   23.8   1.1   12   58-69     14-25  (36)
 33 TIGR01999 iscU FeS cluster ass  27.1      63  0.0014   26.5   2.8   23   41-63     66-88  (124)
 34 PF12112 DUF3579:  Protein of u  25.9      40 0.00086   27.7   1.4   14  239-252    23-36  (92)
 35 TIGR03419 NifU_clost FeS clust  25.9      74  0.0016   26.1   3.0   23   41-63     62-84  (121)
 36 PF01592 NifU_N:  NifU-like N t  25.0      84  0.0018   25.7   3.2   24   38-61     63-86  (126)
 37 PF13384 HTH_23:  Homeodomain-l  25.0      72  0.0016   21.4   2.4   20   46-65     11-30  (50)
 38 cd02144 iodotyrosine_dehalogen  24.9      56  0.0012   27.1   2.2   35   26-70    132-167 (193)
 39 PRK11325 scaffold protein; Pro  24.8      72  0.0016   26.5   2.8   24   40-63     67-90  (127)
 40 KOG3442 Uncharacterized conser  24.7      97  0.0021   27.2   3.6   30   50-79     53-82  (132)
 41 KOG0743 AAA+-type ATPase [Post  24.6 1.6E+02  0.0034   30.4   5.6   37   27-64    377-415 (457)
 42 PF01484 Col_cuticle_N:  Nemato  24.2      58  0.0013   22.3   1.8   23  221-243    30-52  (53)
 43 PF11978 MVP_shoulder:  Shoulde  23.0      82  0.0018   27.1   2.8   38   15-53     26-63  (118)
 44 COG4957 Predicted transcriptio  22.4      67  0.0014   28.6   2.2   34   52-103    98-131 (148)
 45 PF01886 DUF61:  Protein of unk  22.0      95  0.0021   26.6   3.0   44  226-271     1-44  (132)
 46 cd02140 Nitroreductase_4 Nitro  21.3      84  0.0018   26.7   2.6   38   24-69    128-165 (192)
 47 cd03370 NADH_oxidase NADPH_oxi  20.9      74  0.0016   26.1   2.1   34   25-68     97-131 (156)
 48 TIGR02476 BluB cob(II)yrinic a  20.8      87  0.0019   27.0   2.6   38   23-70    134-171 (205)
 49 PF13798 PCYCGC:  Protein of un  20.6 1.2E+02  0.0025   27.2   3.4   54    5-62     87-141 (158)
 50 KOG2422 Uncharacterized conser  20.1      49  0.0011   35.3   1.1   15   61-75     24-38  (665)
 51 cd02050 C1_inh C1 inhibitor (C  20.1      61  0.0013   30.4   1.6   56   39-96     30-85  (352)

No 1  
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.85  E-value=1.1e-21  Score=167.50  Aligned_cols=62  Identities=37%  Similarity=0.569  Sum_probs=60.9

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      +|+++|++++.|||||+|++||++||+.||.||+||||+|||++|||++||||||+++|+++
T Consensus        90 vDqemL~eI~laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkE  151 (158)
T COG5201          90 VDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKE  151 (158)
T ss_pred             hhHHHHHHHHHhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence            79999999999999999999999999999999999999999999999999999999999886


No 2  
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.84  E-value=1.5e-21  Score=168.23  Aligned_cols=69  Identities=35%  Similarity=0.492  Sum_probs=63.9

Q ss_pred             cccccc-----chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhcccccc
Q 023754           12 LFLDWY-----LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNV   80 (277)
Q Consensus        12 ~f~Dw~-----vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~   80 (277)
                      .+..|+     +|+.+||+||.|||||+|++|+++||++||+||+||||+|||++|||++|+||||+++++++.
T Consensus        84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~  157 (162)
T KOG1724|consen   84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKEN  157 (162)
T ss_pred             CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcc
Confidence            377786     789999999999999999999999999999999999999999999999999999887877653


No 3  
>PF01466 Skp1:  Skp1 family, dimerisation domain;  InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=99.84  E-value=1.6e-21  Score=147.80  Aligned_cols=63  Identities=35%  Similarity=0.487  Sum_probs=54.1

Q ss_pred             cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           17 YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        17 ~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      .+|.+.||+|+.||+||+|++|+++||+.||++|+||||+|||++|||++|+|+||+++++.+
T Consensus        10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e   72 (78)
T PF01466_consen   10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKE   72 (78)
T ss_dssp             -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            468899999999999999999999999999999999999999999999999999999998875


No 4  
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.75  E-value=0.00066  Score=53.31  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             ccccc-----chhHHHHHHHHHhhccCC
Q 023754           13 FLDWY-----LITAGFIKYQAAQISLQL   35 (277)
Q Consensus        13 f~Dw~-----vD~~~LfdLi~AANYLdI   35 (277)
                      +..|+     +|.++||+|+.|||||+|
T Consensus        77 ~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       77 IPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            45576     899999999999999997


No 5  
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.32  E-value=0.52  Score=43.16  Aligned_cols=39  Identities=28%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             HHHHhhc--cCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCC
Q 023754           26 YQAAQIS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT   69 (277)
Q Consensus        26 Li~AANY--LdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfT   69 (277)
                      ++.|||.  =+|--|.+++|+..     |.-|.+||+.||||.||.
T Consensus       160 ~~eaanrwtDnI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  160 MAEAANRWTDNIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            3455654  37889999999875     789999999999999985


No 6  
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=87.26  E-value=0.44  Score=43.58  Aligned_cols=40  Identities=28%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             HHHHhhc--cCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           26 YQAAQIS--LQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        26 Li~AANY--LdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      .+.++|-  =+|.-|+++.|+..     +.-|+|||+.||||.||..
T Consensus       164 ~~~~~n~~tDnI~ilidy~c~kf-----~~~~~qir~~fgIPedld~  205 (209)
T COG5124         164 KKVHLNKTTDNIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLDE  205 (209)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchhh
Confidence            4444543  37888999888865     7889999999999999854


No 7  
>PHA02790 Kelch-like protein; Provisional
Probab=80.06  E-value=1.8  Score=42.37  Aligned_cols=34  Identities=9%  Similarity=0.060  Sum_probs=29.6

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIE   51 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IK   51 (277)
                      ++.+.+.+|+.||++|+|..+++.||+.+...|.
T Consensus        88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~  121 (480)
T PHA02790         88 IDSHNVVNLLRASILTSVEFIIYTCINFILRDFR  121 (480)
T ss_pred             EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            4566789999999999999999999999887654


No 8  
>PHA03098 kelch-like protein; Provisional
Probab=79.93  E-value=2.3  Score=41.25  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=32.7

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPE   56 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpE   56 (277)
                      ++.+.+.+|+.||++|+|..|.++|++.+...|.-.+.-
T Consensus        73 i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc~  111 (534)
T PHA03098         73 ITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNCI  111 (534)
T ss_pred             EcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHHH
Confidence            456779999999999999999999999998877544433


No 9  
>PHA02713 hypothetical protein; Provisional
Probab=79.50  E-value=2.5  Score=42.54  Aligned_cols=43  Identities=12%  Similarity=0.002  Sum_probs=36.1

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHh
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRE   60 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe   60 (277)
                      ++.+.+.+|+.||++|+|..|.++||..+...|.--+-=.|..
T Consensus        91 i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~  133 (557)
T PHA02713         91 ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYH  133 (557)
T ss_pred             CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHH
Confidence            4566799999999999999999999999998877666555554


No 10 
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=76.02  E-value=1.5  Score=30.30  Aligned_cols=26  Identities=23%  Similarity=0.165  Sum_probs=21.9

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTS   43 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtC   43 (277)
                      +....+..++.+|.++++..|++.|+
T Consensus        65 ~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       65 LPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             cCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence            34457889999999999999999874


No 11 
>PF03962 Mnd1:  Mnd1 family;  InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=61.47  E-value=8.1  Score=34.29  Aligned_cols=43  Identities=21%  Similarity=0.316  Sum_probs=34.0

Q ss_pred             HHHHHHHHhhcc--CChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCC
Q 023754           22 GFIKYQAAQISL--QLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT   69 (277)
Q Consensus        22 ~LfdLi~AANYL--dIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfT   69 (277)
                      .+..+..|||..  ||-.|..++++.     -|.+.++|++.||||.||.
T Consensus       143 ~~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  143 EIKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence            445566677765  788888888875     3899999999999999984


No 12 
>PF00651 BTB:  BTB/POZ domain;  InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=58.21  E-value=13  Score=27.73  Aligned_cols=29  Identities=14%  Similarity=0.078  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 023754           20 TAGFIKYQAAQISLQLKPLVDLTSRALAR   48 (277)
Q Consensus        20 ~~~LfdLi~AANYLdIk~LLDLtCk~IA~   48 (277)
                      .+.+.+++.+|++|+++.|...|++.+..
T Consensus        81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   81 DENVEELLELADKLQIPELKKACEKFLQE  109 (111)
T ss_dssp             TTTHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence            67899999999999999999999998854


No 13 
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=54.36  E-value=11  Score=38.51  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=28.7

Q ss_pred             chhHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 023754           18 LITAGFIKYQAAQISLQLKPLVDLTSRALARI   49 (277)
Q Consensus        18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~   49 (277)
                      ++....-+|+.||.+|+|.++++.||..+...
T Consensus       102 i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~  133 (571)
T KOG4441|consen  102 ISEDNVQELLEAASLLQIPEVVDACCEFLESQ  133 (571)
T ss_pred             echHhHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            56778999999999999999999999988764


No 14 
>PF09278 MerR-DNA-bind:  MerR, DNA binding;  InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=53.56  E-value=23  Score=25.14  Aligned_cols=38  Identities=37%  Similarity=0.451  Sum_probs=26.6

Q ss_pred             cCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHHHHHHH
Q 023754           52 GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER  103 (277)
Q Consensus        52 GKSpEEIRe~FgIenDfTpEEEeEIr~e~~~dp~irllnrlya~~r~el~e~  103 (277)
                      |-|.+||++++.+..+  +            ++.......+...++.++.++
T Consensus        14 GfsL~eI~~~l~l~~~--~------------~~~~~~~~~~l~~~~~~i~~~   51 (65)
T PF09278_consen   14 GFSLEEIRELLELYDQ--G------------DPPCADRRALLEEKLEEIEEQ   51 (65)
T ss_dssp             T--HHHHHHHHHHCCS--H------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhccCC--C------------CCCHHHHHHHHHHHHHHHHHH
Confidence            8999999999987654  2            445555567778888887776


No 15 
>PF15063 TC1:  Thyroid cancer protein 1
Probab=53.40  E-value=8.9  Score=30.84  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             HHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccccCCChh
Q 023754           43 SRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPR   85 (277)
Q Consensus        43 Ck~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~~~dp~   85 (277)
                      -+++|+++.+-.-++|+..|.-..|--.||.+++.....+||.
T Consensus        27 KkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~~~d~e   69 (79)
T PF15063_consen   27 KKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWECAQDPE   69 (79)
T ss_pred             hhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhhCCCHH
Confidence            3678999999999999999999999999999999999999987


No 16 
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=46.38  E-value=11  Score=40.86  Aligned_cols=31  Identities=10%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             HHHhHHHHHHH-HHhcCChhHHHHHHHhhccc
Q 023754          224 EELDREVEDFA-RRLNSDWPQRMQEILSLGQD  254 (277)
Q Consensus       224 e~~dreve~fa-rrlns~~~er~~~~~s~~q~  254 (277)
                      ++|-+++-+-. +-||..|.+|.++++...++
T Consensus       511 ~~ll~~lA~~l~p~l~~~~~~~~~~~~~~~~~  542 (803)
T PLN03083        511 GSILKHLADHLRPMLINSLKERRKALFTENAE  542 (803)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence            36666665554 45899999999999865443


No 17 
>PF14384 DUF4415:  Domain of unknown function (DUF4415)
Probab=43.58  E-value=22  Score=26.35  Aligned_cols=26  Identities=23%  Similarity=0.450  Sum_probs=23.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHh
Q 023754          225 ELDREVEDFARRLNSDWPQRMQEILS  250 (277)
Q Consensus       225 ~~dreve~farrlns~~~er~~~~~s  250 (277)
                      .||.+|-+|.+..-..|.-||+++|.
T Consensus        34 rld~dVl~~fka~G~gyQtriN~~Lr   59 (62)
T PF14384_consen   34 RLDPDVLEWFKAQGKGYQTRINEALR   59 (62)
T ss_pred             EeCHHHHHHHHHHChhHHHHHHHHHH
Confidence            46788999999999999999999985


No 18 
>PF03131 bZIP_Maf:  bZIP Maf transcription factor;  InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor.  In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=43.48  E-value=57  Score=25.59  Aligned_cols=42  Identities=31%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             HHhcCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHH
Q 023754           49 IIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRK   98 (277)
Q Consensus        49 ~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~~~dp~irllnrlya~~r~   98 (277)
                      .|-..+++|...++   ..+|+++...++.     -+-++=||.||..++
T Consensus         5 eL~~m~v~efn~~L---~~lt~~q~~~lK~-----~RRr~KNR~~A~~cR   46 (92)
T PF03131_consen    5 ELVSMSVREFNRLL---RGLTEEQIAELKQ-----RRRRLKNRGYAQNCR   46 (92)
T ss_dssp             HHHHS-HHHHHHHC---TTS-HHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHH---HcCCHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence            45568899999999   6899999888865     456789999999543


No 19 
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=42.71  E-value=23  Score=39.33  Aligned_cols=7  Identities=14%  Similarity=0.453  Sum_probs=4.5

Q ss_pred             HHhhhhh
Q 023754          122 DDLLSFI  128 (277)
Q Consensus       122 deLLsFI  128 (277)
                      .+.+.|+
T Consensus       882 k~~~~~~  888 (1018)
T KOG2002|consen  882 KEILKLP  888 (1018)
T ss_pred             HHHHhcc
Confidence            4566776


No 20 
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=41.85  E-value=31  Score=32.20  Aligned_cols=36  Identities=25%  Similarity=0.265  Sum_probs=32.4

Q ss_pred             hhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCC
Q 023754           19 ITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKT   54 (277)
Q Consensus        19 D~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKS   54 (277)
                      ....|-+|..=|.|-.+.+|+++|..+||..+.+.-
T Consensus        74 ~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~~~~~~  109 (230)
T KOG2716|consen   74 SEKELKELLREAEFYLLDGLVELCQSAIARLIRGYI  109 (230)
T ss_pred             chHHHHHHHHHHHHhhHHHHHHHHHHHhhhcccCcc
Confidence            356889999999999999999999999999988753


No 21 
>PF05553 DUF761:  Cotton fibre expressed protein;  InterPro: IPR008480 This family consists of several plant proteins of unknown function. Three of the sequences from Gossypium hirsutum (Upland cotton) in this family are described as G. hirsutum fibre expressed proteins []. The remaining sequences, found in Arabidopsis thaliana, are uncharacterised.
Probab=39.03  E-value=29  Score=24.24  Aligned_cols=26  Identities=35%  Similarity=0.608  Sum_probs=21.0

Q ss_pred             HHHhHHHHHHHHHhcCChhHHHHHHHhh
Q 023754          224 EELDREVEDFARRLNSDWPQRMQEILSL  251 (277)
Q Consensus       224 e~~dreve~farrlns~~~er~~~~~s~  251 (277)
                      ++||+-+|+|.++.+-.|  |+|..-|+
T Consensus         3 ~evd~rAe~FI~~f~~ql--rlqr~~S~   28 (38)
T PF05553_consen    3 DEVDRRAEEFIAKFREQL--RLQRQESL   28 (38)
T ss_pred             hHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            679999999999999888  66655554


No 22 
>PRK05365 malonic semialdehyde reductase; Provisional
Probab=36.81  E-value=27  Score=29.90  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           26 YQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        26 Li~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      |+.||..|||-..          .|.|-.++.|++.|||++++.+
T Consensus       131 l~LaA~~~Glgs~----------~~~g~~~~~v~~~l~ip~~~~~  165 (195)
T PRK05365        131 LILAARALGLDAG----------PMSGFDAAAVDAEFFAGTTWKS  165 (195)
T ss_pred             HHHHHHHcCCccC----------CccccCHHHHHHHhCCCCCeeE
Confidence            8889999998762          4456788999999999876543


No 23 
>PRK11053 dihydropteridine reductase; Provisional
Probab=36.70  E-value=28  Score=30.25  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=27.1

Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCC-CC
Q 023754           23 FIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPD-DL   68 (277)
Q Consensus        23 LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIen-Df   68 (277)
                      +-.|+.||..||+...          .|.|-.++.+++.|||++ ++
T Consensus       147 ~~~lmLaA~~~Glgs~----------~i~g~~~~~v~~~l~ip~~~~  183 (217)
T PRK11053        147 LGNLLLGAAALGIDAT----------PIEGFDAAILDAEFGLREKGL  183 (217)
T ss_pred             HHHHHHHHHHcCCCCC----------CcCCcCHHHHHHHhCCCCcCc
Confidence            3377778888887654          456778999999999984 45


No 24 
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=34.88  E-value=35  Score=21.29  Aligned_cols=21  Identities=29%  Similarity=0.599  Sum_probs=17.6

Q ss_pred             HHHHHHHHhcCCHHHHHhHcC
Q 023754           43 SRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        43 Ck~IA~~IKGKSpEEIRe~Fg   63 (277)
                      -..||..+.++|+.+++..|.
T Consensus        22 w~~Ia~~~~~rs~~~~~~~~~   42 (45)
T cd00167          22 WEKIAKELPGRTPKQCRERWR   42 (45)
T ss_pred             HHHHHhHcCCCCHHHHHHHHH
Confidence            467888898999999998764


No 25 
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.37  E-value=28  Score=37.08  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=19.0

Q ss_pred             CCcccccCCCCCCCCCh---HHHHHHhHHHHHHHHHhcCChhHHHH
Q 023754          204 SPKMEFDDGEIDDDLDP---AMKEELDREVEDFARRLNSDWPQRMQ  246 (277)
Q Consensus       204 ~p~~~f~d~~~dd~~dp---a~~e~~dreve~farrlns~~~er~~  246 (277)
                      .|-+.+.|.+.++.--|   .+-++.-+=+-+ -+.||-+-+=+.|
T Consensus       149 q~~v~~i~~~~~~~~~~l~r~l~~k~~k~~v~-~~~lnpdtE~k~~  193 (665)
T KOG2422|consen  149 QDWVLEIDLKSDPLFTELPRSLGSKSCKLFVD-FKKLNPDTEFKLQ  193 (665)
T ss_pred             chhHHHHhhhcccccCccchhHHHHHHHHHHh-hhccCCCchhhhh
Confidence            34566666555543322   222222222222 2567776655443


No 26 
>cd02148 Nitroreductase_5 Nitroreductase-like family 5.  A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor.  The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=34.14  E-value=26  Score=29.66  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=27.6

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           26 YQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        26 Li~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      |+.||.-||+-.          ..|.|-.++++++.|||++++.+
T Consensus       124 l~LaA~~lGlgs----------~~~~g~d~~~~~~~L~lp~~~~~  158 (185)
T cd02148         124 FILAARALGLDA----------GPMSGFDAAAVDAEFFADTRWRS  158 (185)
T ss_pred             HHHHHHHcCCCc----------CCCcccCHHHHHHHhCCCCCeEE
Confidence            888888888875          24556788999999999877643


No 27 
>PF03656 Pam16:  Pam16;  InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=34.13  E-value=23  Score=30.27  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=19.2

Q ss_pred             HHHHhcCCHHHHHhHcCCCCCCChHhhhccccccC--CCh
Q 023754           47 ARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVT--DDP   84 (277)
Q Consensus        47 A~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~~--~dp   84 (277)
                      +...+|+|++|-++++|++..+++|+..+-....|  +||
T Consensus        49 ~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~   88 (127)
T PF03656_consen   49 ASNSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP   88 (127)
T ss_dssp             --------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred             HhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence            34566999999999999999899888776555433  365


No 28 
>smart00717 SANT SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.97  E-value=38  Score=21.36  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=17.5

Q ss_pred             HHHHHHHHhcCCHHHHHhHcC
Q 023754           43 SRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        43 Ck~IA~~IKGKSpEEIRe~Fg   63 (277)
                      -..||..+.++|+.+++..|.
T Consensus        24 w~~Ia~~~~~rt~~~~~~~~~   44 (49)
T smart00717       24 WEKIAKELPGRTAEQCRERWN   44 (49)
T ss_pred             HHHHHHHcCCCCHHHHHHHHH
Confidence            367888888999999998774


No 29 
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=33.28  E-value=38  Score=34.81  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=37.4

Q ss_pred             cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCC
Q 023754           17 YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDL   68 (277)
Q Consensus        17 ~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDf   68 (277)
                      +++.+.+..++.||.+|.+.+|++-|...+-   ..-+|+-+..++-..+-+
T Consensus       137 eI~l~dv~gvlAaA~~lqldgl~qrC~evMi---e~lspkta~~yYea~ckY  185 (488)
T KOG4682|consen  137 EIKLSDVVGVLAAACLLQLDGLIQRCGEVMI---ETLSPKTACGYYEAACKY  185 (488)
T ss_pred             eccHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HhcChhhhhHhhhhhhhh
Confidence            4677889999999999999999998887654   445666666666655544


No 30 
>PF00249 Myb_DNA-binding:  Myb-like DNA-binding domain;  InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=32.51  E-value=45  Score=22.67  Aligned_cols=32  Identities=16%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHHHh-cCCHHHHHhHc
Q 023754           26 YQAAQISLQLKPLVDLTSRALARIIE-GKTPEEIRETF   62 (277)
Q Consensus        26 Li~AANYLdIk~LLDLtCk~IA~~IK-GKSpEEIRe~F   62 (277)
                      |+.|..-++-.     .=..||..+- |+|+.+++..|
T Consensus        12 l~~~v~~~g~~-----~W~~Ia~~~~~~Rt~~qc~~~~   44 (48)
T PF00249_consen   12 LLEAVKKYGKD-----NWKKIAKRMPGGRTAKQCRSRY   44 (48)
T ss_dssp             HHHHHHHSTTT-----HHHHHHHHHSSSSTHHHHHHHH
T ss_pred             HHHHHHHhCCc-----HHHHHHHHcCCCCCHHHHHHHH
Confidence            34444444444     5678999999 99999999876


No 31 
>PF13518 HTH_28:  Helix-turn-helix domain
Probab=29.70  E-value=71  Score=21.18  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=18.4

Q ss_pred             HHHHHHHhcCCHHHHHhHcCCC
Q 023754           44 RALARIIEGKTPEEIRETFHLP   65 (277)
Q Consensus        44 k~IA~~IKGKSpEEIRe~FgIe   65 (277)
                      +.|...+.|.|..++...|||.
T Consensus         4 ~iv~~~~~g~s~~~~a~~~gis   25 (52)
T PF13518_consen    4 QIVELYLEGESVREIAREFGIS   25 (52)
T ss_pred             HHHHHHHcCCCHHHHHHHHCCC
Confidence            4566677899999999999994


No 32 
>PF12556 CobS_N:  Cobaltochelatase CobS subunit N terminal 
Probab=27.35  E-value=34  Score=23.77  Aligned_cols=12  Identities=33%  Similarity=0.755  Sum_probs=10.7

Q ss_pred             HHhHcCCCCCCC
Q 023754           58 IRETFHLPDDLT   69 (277)
Q Consensus        58 IRe~FgIenDfT   69 (277)
                      +|+.|||..|++
T Consensus        14 vre~FGiDsDm~   25 (36)
T PF12556_consen   14 VREVFGIDSDMK   25 (36)
T ss_pred             HHHhcCCCcCCe
Confidence            799999999975


No 33 
>TIGR01999 iscU FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms.
Probab=27.05  E-value=63  Score=26.55  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHhHcC
Q 023754           41 LTSRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        41 LtCk~IA~~IKGKSpEEIRe~Fg   63 (277)
                      .++..++.+++|||++|+..+..
T Consensus        66 Asas~~~e~i~Gktl~ea~~i~~   88 (124)
T TIGR01999        66 ASSSLATELIKGKSLEEALKIKN   88 (124)
T ss_pred             HHHHHHHHHHcCCCHHHHHhccH
Confidence            44577888999999999998755


No 34 
>PF12112 DUF3579:  Protein of unknown function (DUF3579);  InterPro: IPR021969  This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=25.88  E-value=40  Score=27.71  Aligned_cols=14  Identities=36%  Similarity=0.674  Sum_probs=11.3

Q ss_pred             CChhHHHHHHHhhc
Q 023754          239 SDWPQRMQEILSLG  252 (277)
Q Consensus       239 s~~~er~~~~~s~~  252 (277)
                      |||.||+-.+||.-
T Consensus        23 SDWaERL~gvla~F   36 (92)
T PF12112_consen   23 SDWAERLCGVLASF   36 (92)
T ss_dssp             TTHHHHHHHTT-EE
T ss_pred             ccHHHHHHHHHHcc
Confidence            89999999887763


No 35 
>TIGR03419 NifU_clost FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not.
Probab=25.86  E-value=74  Score=26.11  Aligned_cols=23  Identities=35%  Similarity=0.367  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHhHcC
Q 023754           41 LTSRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        41 LtCk~IA~~IKGKSpEEIRe~Fg   63 (277)
                      .++..++.+|+|||++|+.++..
T Consensus        62 Asas~~~e~i~Gk~l~ea~~i~~   84 (121)
T TIGR03419        62 ASSSMATEMIKGKTLEEAWELTN   84 (121)
T ss_pred             HHHHHHHHHHcCCCHHHHHHhhh
Confidence            45567788999999999887754


No 36 
>PF01592 NifU_N:  NifU-like N terminal domain;  InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=25.00  E-value=84  Score=25.71  Aligned_cols=24  Identities=25%  Similarity=0.349  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHhH
Q 023754           38 LVDLTSRALARIIEGKTPEEIRET   61 (277)
Q Consensus        38 LLDLtCk~IA~~IKGKSpEEIRe~   61 (277)
                      ..-.++..++.+++|||++|+.++
T Consensus        63 ~~~Asas~~~~~i~gk~l~ea~~i   86 (126)
T PF01592_consen   63 ISIASASMMCELIKGKTLEEALKI   86 (126)
T ss_dssp             HHHHHHHHHHHHHTTSBHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHH
Confidence            344567788999999999999653


No 37 
>PF13384 HTH_23:  Homeodomain-like domain; PDB: 2X48_C.
Probab=24.98  E-value=72  Score=21.36  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=13.1

Q ss_pred             HHHHHhcCCHHHHHhHcCCC
Q 023754           46 LARIIEGKTPEEIRETFHLP   65 (277)
Q Consensus        46 IA~~IKGKSpEEIRe~FgIe   65 (277)
                      |.....|+|..+|.+.||++
T Consensus        11 i~l~~~G~s~~~ia~~lgvs   30 (50)
T PF13384_consen   11 IRLLREGWSIREIAKRLGVS   30 (50)
T ss_dssp             HHHHHHT--HHHHHHHHTS-
T ss_pred             HHHHHCCCCHHHHHHHHCcC
Confidence            33344599999999999986


No 38 
>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney,  using NADPH as electron donor. This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.
Probab=24.95  E-value=56  Score=27.13  Aligned_cols=35  Identities=14%  Similarity=0.011  Sum_probs=0.0

Q ss_pred             HHHHhhccCChhHHHHHHHHHHHHHhcCCH-HHHHhHcCCCCCCCh
Q 023754           26 YQAAQISLQLKPLVDLTSRALARIIEGKTP-EEIRETFHLPDDLTE   70 (277)
Q Consensus        26 Li~AANYLdIk~LLDLtCk~IA~~IKGKSp-EEIRe~FgIenDfTp   70 (277)
                      |+.||.-|||-..          ++.|-.. +.|++.|||++++.+
T Consensus       132 l~LaA~~~Glgs~----------~~~~~~~~~~v~~~l~ip~~~~~  167 (193)
T cd02144         132 LLAALQNAGLGTV----------TTTPLNMGPFLRRLLGRPANEKL  167 (193)
T ss_pred             HHHHHHHCCCcee----------ecCCcchhHHHHHHhCCCCCCce


No 39 
>PRK11325 scaffold protein; Provisional
Probab=24.85  E-value=72  Score=26.46  Aligned_cols=24  Identities=21%  Similarity=0.185  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHhHcC
Q 023754           40 DLTSRALARIIEGKTPEEIRETFH   63 (277)
Q Consensus        40 DLtCk~IA~~IKGKSpEEIRe~Fg   63 (277)
                      -.++..++.+++|||++|+..+-+
T Consensus        67 ~Asas~~~e~~~Gktl~ea~~i~~   90 (127)
T PRK11325         67 IASSSLVTEWVKGKTLDEALAIKN   90 (127)
T ss_pred             HHHHHHHHHHHcCCCHHHHHhcCH
Confidence            345566788999999999998755


No 40 
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.67  E-value=97  Score=27.15  Aligned_cols=30  Identities=17%  Similarity=0.185  Sum_probs=24.1

Q ss_pred             HhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754           50 IEGKTPEEIRETFHLPDDLTEEEKLEPLNN   79 (277)
Q Consensus        50 IKGKSpEEIRe~FgIenDfTpEEEeEIr~e   79 (277)
                      ..|.|.+|-++++||.+++.++|.+.--..
T Consensus        53 ~~~iTlqEa~qILnV~~~ln~eei~k~yeh   82 (132)
T KOG3442|consen   53 NGKITLQEAQQILNVKEPLNREEIEKRYEH   82 (132)
T ss_pred             cccccHHHHhhHhCCCCCCCHHHHHHHHHH
Confidence            346889999999999999988887754444


No 41 
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=24.62  E-value=1.6e+02  Score=30.45  Aligned_cols=37  Identities=22%  Similarity=0.251  Sum_probs=23.5

Q ss_pred             HHHhhccCChhHHHHHHHHHHHHHhcC--CHHHHHhHcCC
Q 023754           27 QAAQISLQLKPLVDLTSRALARIIEGK--TPEEIRETFHL   64 (277)
Q Consensus        27 i~AANYLdIk~LLDLtCk~IA~~IKGK--SpEEIRe~FgI   64 (277)
                      ++|+|||+++. =.-.|..|...+.|-  ||.||.+.|--
T Consensus       377 ~La~nYL~~~~-~h~L~~eie~l~~~~~~tPA~V~e~lm~  415 (457)
T KOG0743|consen  377 TLASNYLGIEE-DHRLFDEIERLIEETEVTPAQVAEELMK  415 (457)
T ss_pred             HHHHHhcCCCC-CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence            57999999976 223344555566653  66666666543


No 42 
>PF01484 Col_cuticle_N:  Nematode cuticle collagen N-terminal domain;  InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=24.23  E-value=58  Score=22.31  Aligned_cols=23  Identities=30%  Similarity=0.673  Sum_probs=20.2

Q ss_pred             HHHHHHhHHHHHHHHHhcCChhH
Q 023754          221 AMKEELDREVEDFARRLNSDWPQ  243 (277)
Q Consensus       221 a~~e~~dreve~farrlns~~~e  243 (277)
                      -++.+++.|++.|-.+-|..|-|
T Consensus        30 ~~~~~~~~em~~fk~~s~d~W~~   52 (53)
T PF01484_consen   30 NFQSELDDEMEEFKEISDDAWNE   52 (53)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence            46889999999999999999954


No 43 
>PF11978 MVP_shoulder:  Shoulder domain;  InterPro: IPR021870  This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=23.04  E-value=82  Score=27.06  Aligned_cols=38  Identities=18%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcC
Q 023754           15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGK   53 (277)
Q Consensus        15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGK   53 (277)
                      .|..+. .--+...|+....++.-+-.+|++||..|+|.
T Consensus        26 nw~F~v-~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~a   63 (118)
T PF11978_consen   26 NWHFDV-DRKDPEDAAKLFSVPDFVGDACKAIASRIRGA   63 (118)
T ss_dssp             EEEE---TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHH
T ss_pred             EEEEec-CCCChhHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence            465433 11255588999999999999999999999973


No 44 
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=22.40  E-value=67  Score=28.56  Aligned_cols=34  Identities=35%  Similarity=0.573  Sum_probs=27.0

Q ss_pred             cCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHHHHHHHHH
Q 023754           52 GKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARKRKELKER  103 (277)
Q Consensus        52 GKSpEEIRe~FgIenDfTpEEEeEIr~e~~~dp~irllnrlya~~r~el~e~  103 (277)
                      |.||+|-|+.+|++.||.-                  .--=||-.|+.|-+.
T Consensus        98 gmTPd~YR~KW~LP~dYPM------------------vAPnYAa~RS~LAK~  131 (148)
T COG4957          98 GLTPDEYRAKWGLPPDYPM------------------VAPNYAAARSQLAKA  131 (148)
T ss_pred             CCCHHHHHHhcCCCCCCCc------------------cchHHHHHHHHHHHH
Confidence            8999999999999999842                  225588888888665


No 45 
>PF01886 DUF61:  Protein of unknown function DUF61;  InterPro: IPR002746 The proteins in this entry are functionally uncharacterised.
Probab=22.04  E-value=95  Score=26.58  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=31.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHhhccccceeeeeecCCcccccc
Q 023754          226 LDREVEDFARRLNSDWPQRMQEILSLGQDRRLVQVSMNGNCSSRRC  271 (277)
Q Consensus       226 ~dreve~farrlns~~~er~~~~~s~~q~r~~~~~~~~~n~~~~~~  271 (277)
                      |||=++...+++|+.||.+-.-+-.+-+|-+|.-..  -||+.+++
T Consensus         1 ~dr~~~~ei~~iN~~lP~~rktL~eLL~ee~P~i~l--rdG~~h~f   44 (132)
T PF01886_consen    1 IDRILEKEIRRINKHLPRERKTLKELLEEEKPSIIL--RDGSRHRF   44 (132)
T ss_pred             ChhHHHHHHHHHHhhchHhhhhHHHHHhCCCCeEEe--cCCCEEEE
Confidence            467788889999999998877777777777774333  34665543


No 46 
>cd02140 Nitroreductase_4 Nitroreductase-like family 4.  A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor.  The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=21.26  E-value=84  Score=26.74  Aligned_cols=38  Identities=13%  Similarity=0.168  Sum_probs=25.9

Q ss_pred             HHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCC
Q 023754           24 IKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLT   69 (277)
Q Consensus        24 fdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfT   69 (277)
                      -.|+.||..+||-..+.-     ..   .-.++.+|++|||+++++
T Consensus       128 ~nl~LaA~~~GlGs~~~~-----~~---~~~~~~v~~~l~ip~~~~  165 (192)
T cd02140         128 IAVWTALAAEGIGANLQH-----YN---PLIDEEVAKKWNIPSNWK  165 (192)
T ss_pred             HHHHHHHHhCCCcccHHH-----hC---ccCCHHHHHhcCCCccce
Confidence            488889999988763210     00   023589999999997753


No 47 
>cd03370 NADH_oxidase NADPH_oxidase. Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor.  The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.
Probab=20.94  E-value=74  Score=26.08  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=22.3

Q ss_pred             HHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCC-CC
Q 023754           25 KYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPD-DL   68 (277)
Q Consensus        25 dLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIen-Df   68 (277)
                      .|+.||..|+|-..          +|.|-..+.|++.|||+. ++
T Consensus        97 ~l~L~A~~lGlgs~----------~i~~~~~~~v~~~l~l~~~~~  131 (156)
T cd03370          97 FLLLAATALGLATS----------PMTGFDEEKVKEALGLPGRDR  131 (156)
T ss_pred             HHHHHHHHcCCCcc----------cCcCcCHHHHHHHhCcCCcCc
Confidence            45555555554332          445667899999999986 44


No 48 
>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase. The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.
Probab=20.85  E-value=87  Score=26.98  Aligned_cols=38  Identities=13%  Similarity=0.099  Sum_probs=0.0

Q ss_pred             HHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754           23 FIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE   70 (277)
Q Consensus        23 LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp   70 (277)
                      +-.|+.||..|||-..          ++.+-..++|++.|||+.++++
T Consensus       134 ~~nl~LaA~~~GlGs~----------~~~~~~~~~v~~~L~lp~~~~~  171 (205)
T TIGR02476       134 IQNLWLAARAEGLGVG----------WVSILDPDAVRRLLGVPEGWRL  171 (205)
T ss_pred             HHHHHHHHHHCCCcce----------eecccChHHHHHHhCcCCCceE


No 49 
>PF13798 PCYCGC:  Protein of unknown function with PCYCGC motif
Probab=20.57  E-value=1.2e+02  Score=27.25  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=32.0

Q ss_pred             cccCcccccccccchhHH-HHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHc
Q 023754            5 FHKGSILLFLDWYLITAG-FIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETF   62 (277)
Q Consensus         5 ~h~gs~~~f~Dw~vD~~~-LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~F   62 (277)
                      .|++...=|+++.-.+.. .++=    +-..=.-.|+.+..++...=+|||+.|||++.
T Consensus        87 gH~Sn~~Cfi~e~~~dG~Vvwd~----Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~I  141 (158)
T PF13798_consen   87 GHKSNLDCFIDEIKEDGSVVWDD----HGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYI  141 (158)
T ss_pred             CCccccccceeeccCCCceeecc----cccccHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            477777777765422111 1110    11111234667777777788899999999864


No 50 
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.14  E-value=49  Score=35.34  Aligned_cols=15  Identities=20%  Similarity=0.160  Sum_probs=6.1

Q ss_pred             HcCCCCCCChHhhhc
Q 023754           61 TFHLPDDLTEEEKLE   75 (277)
Q Consensus        61 ~FgIenDfTpEEEeE   75 (277)
                      .|-.++|-..||.-.
T Consensus        24 ~~d~esded~e~s~~   38 (665)
T KOG2422|consen   24 ANDMESDEDTEESGQ   38 (665)
T ss_pred             hccccccccchhccc
Confidence            344444444444333


No 51 
>cd02050 C1_inh C1 inhibitor (C1-Inh) is a protease inhibitor of the serpin family. It plays a pivotal role in regulating the activation of the classical complement pathway and of the contact system, via regulating bradykinin formation, inhibiting factor XII and kallikrein of the contact system, and via acting on factor XI in the coagulation cascade. This subgroup corresponds to clade G of the serpin superfamily.
Probab=20.11  E-value=61  Score=30.39  Aligned_cols=56  Identities=14%  Similarity=0.231  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccccCCChhHHHHHHHHHHH
Q 023754           39 VDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNNVTDDPRIRLLNRLYARK   96 (277)
Q Consensus        39 LDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e~~~dp~irllnrlya~~   96 (277)
                      +-.+-..++.=.+|+|.+||++.+|++.+++.  .....+.......+.+.|++|..+
T Consensus        30 i~~aL~ml~~GA~g~T~~ql~~~L~~~~~~~~--~~~~~~~l~~~~~l~~an~i~~~~   85 (352)
T cd02050          30 IALLLSHLLLGARGKTQRRLESILSYPHDFAC--VHSALKKLKNKLGLLSASQIFHHP   85 (352)
T ss_pred             HHHHHHHHhcccCccHHHHHHHhcCCCCchhH--HHHHHHHhhhcchhHHHHHHHHhC
Confidence            34444455555568999999999999876531  222223334456788999999874


Done!