Query 023754
Match_columns 277
No_of_seqs 130 out of 438
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 12:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 99.9 2.5E-25 8.7E-30 187.9 6.5 68 12-79 90-162 (169)
2 2p1m_A SKP1-like protein 1A; F 99.9 1.1E-24 3.7E-29 181.4 4.3 70 10-79 80-154 (160)
3 2ast_A S-phase kinase-associat 99.9 2.1E-23 7.3E-28 172.5 5.4 62 18-79 94-155 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 99.8 5.6E-22 1.9E-26 162.1 4.6 53 18-70 89-141 (141)
5 2fnj_C Transcription elongatio 97.4 2E-05 6.7E-10 60.8 -0.0 27 9-35 70-96 (96)
6 1hv2_A Elongin C, ELC1; protei 97.4 2.4E-05 8.2E-10 60.7 0.3 25 11-35 75-99 (99)
7 4ajy_C Transcription elongatio 96.4 0.00087 3E-08 51.0 1.0 25 11-35 73-97 (97)
8 2yy9_A Zinc finger and BTB dom 93.0 0.024 8.2E-07 44.4 0.8 40 18-57 87-126 (135)
9 1buo_A POZ domain, protein (pr 88.6 0.31 1.1E-05 37.0 3.2 33 18-50 89-121 (121)
10 3m5b_A Zinc finger and BTB dom 87.8 0.29 9.8E-06 37.9 2.6 31 18-48 87-117 (119)
11 2vkp_A BTB/POZ domain-containi 87.2 0.41 1.4E-05 35.1 3.0 32 18-49 77-108 (109)
12 3htm_A Speckle-type POZ protei 85.9 0.86 2.9E-05 35.7 4.4 42 18-59 100-141 (172)
13 2q81_A MIZ-1 protein; BTB/POZ 85.1 0.49 1.7E-05 35.9 2.6 30 18-47 88-117 (119)
14 2vpk_A Myoneurin; transcriptio 83.0 0.78 2.7E-05 34.3 2.9 30 18-47 86-115 (116)
15 2if5_A Zinc finger and BTB dom 82.0 1.1 3.7E-05 33.6 3.4 29 18-46 91-119 (120)
16 2z8h_A Transcription regulator 82.0 0.34 1.2E-05 37.7 0.5 34 18-51 101-134 (138)
17 3i3n_A Kelch-like protein 11; 81.7 1.4 4.8E-05 37.8 4.3 42 18-59 107-148 (279)
18 4eoz_A Speckle-type POZ protei 81.5 0.59 2E-05 35.7 1.7 38 18-55 91-128 (145)
19 1r29_A B-cell lymphoma 6 prote 80.9 1.1 3.8E-05 34.0 3.1 30 18-47 95-124 (127)
20 3b84_A Zinc finger and BTB dom 78.3 0.75 2.6E-05 34.9 1.4 30 18-47 86-115 (119)
21 3hve_A Gigaxonin; ubiquitin, c 78.0 1.2 4.2E-05 37.6 2.7 41 18-58 99-139 (256)
22 3hqi_A Speckle-type POZ protei 74.4 2.9 0.0001 36.2 4.2 40 19-58 241-280 (312)
23 3ga1_A Nucleus accumbens-assoc 69.0 0.72 2.5E-05 35.3 -0.8 31 18-48 96-126 (129)
24 2ihc_A Transcription regulator 57.0 0.84 2.9E-05 34.8 -2.4 29 18-46 94-122 (124)
25 3ohu_A Transcription regulator 55.5 0.54 1.8E-05 35.7 -3.7 27 18-44 97-123 (125)
26 1wgx_A KIAA1903 protein; MYB D 42.2 35 0.0012 25.5 4.5 45 15-63 10-54 (73)
27 2k9n_A MYB24; R2R3 domain, DNA 40.2 16 0.00056 27.7 2.5 34 43-76 24-64 (107)
28 2cqq_A RSGI RUH-037, DNAJ homo 38.7 19 0.00063 26.6 2.5 44 15-63 10-53 (72)
29 2dim_A Cell division cycle 5-l 37.9 14 0.00046 26.2 1.6 31 43-73 32-69 (70)
30 3fkc_A Transcriptional regulat 37.8 11 0.00038 28.4 1.2 23 18-40 93-115 (116)
31 1gv2_A C-MYB, MYB proto-oncoge 34.3 15 0.00051 27.6 1.4 34 43-76 27-67 (105)
32 1x41_A Transcriptional adaptor 33.4 27 0.00093 24.1 2.5 21 43-63 31-51 (60)
33 1h8a_C AMV V-MYB, MYB transfor 31.5 25 0.00085 27.4 2.3 34 43-76 50-90 (128)
34 2yus_A SWI/SNF-related matrix- 31.5 28 0.00096 25.8 2.5 21 43-63 40-60 (79)
35 3tnt_A SARS coronavirus main p 31.4 19 0.00065 33.8 1.8 63 9-74 226-297 (306)
36 4eef_G F-HB80.4, designed hema 30.9 11 0.00037 28.8 0.1 47 15-65 22-68 (74)
37 2cjj_A Radialis; plant develop 27.3 31 0.001 26.7 2.1 45 15-63 10-54 (93)
38 2yum_A ZZZ3 protein, zinc fing 27.3 37 0.0013 24.2 2.4 21 42-62 35-55 (75)
39 2eqr_A N-COR1, N-COR, nuclear 27.1 32 0.0011 24.0 2.0 41 15-63 14-54 (61)
40 3lvl_A NIFU-like protein; prot 26.6 50 0.0017 26.4 3.3 24 40-63 68-91 (129)
41 2qq4_A Iron-sulfur cluster bio 25.9 56 0.0019 26.3 3.5 23 41-63 69-91 (138)
42 4eo3_A Bacterioferritin comigr 25.2 22 0.00076 31.8 1.1 38 23-70 245-282 (322)
43 2cqr_A RSGI RUH-043, DNAJ homo 25.0 20 0.00069 26.5 0.7 44 16-63 21-64 (73)
44 3g5o_A Uncharacterized protein 25.0 1.5E+02 0.0052 22.8 5.8 49 18-66 47-97 (108)
45 2elk_A SPCC24B10.08C protein; 24.7 46 0.0016 22.9 2.5 20 43-62 32-52 (58)
46 1xjs_A NIFU-like protein; SR17 24.2 62 0.0021 26.4 3.5 23 41-63 71-93 (147)
47 1ug2_A 2610100B20RIK gene prod 23.5 43 0.0015 26.7 2.3 21 43-63 58-78 (95)
48 2jsp_A Transcriptional regulat 23.4 32 0.0011 26.8 1.5 19 51-69 42-60 (87)
49 3mzy_A RNA polymerase sigma-H 23.1 1.1E+02 0.0036 22.7 4.4 18 48-65 120-137 (164)
50 3gag_A Putative NADH dehydroge 22.6 21 0.0007 28.7 0.3 34 25-68 142-175 (206)
51 1tc3_C Protein (TC3 transposas 22.4 79 0.0027 18.6 3.0 17 49-65 18-34 (51)
52 3hug_A RNA polymerase sigma fa 22.3 1.5E+02 0.0052 21.0 5.0 17 49-65 50-66 (92)
53 3osg_A MYB21; transcription-DN 22.2 38 0.0013 26.4 1.8 35 43-77 33-74 (126)
54 1su0_B NIFU like protein ISCU; 21.9 81 0.0028 26.1 3.8 23 41-63 70-92 (159)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=99.91 E-value=2.5e-25 Score=187.86 Aligned_cols=68 Identities=31% Similarity=0.486 Sum_probs=64.1
Q ss_pred ccccc-----cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754 12 LFLDW-----YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79 (277)
Q Consensus 12 ~f~Dw-----~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e 79 (277)
.+.+| .+|..+||+||.|||||+|++|+++||++||+||+||||||||++|||++||||||+++||++
T Consensus 90 ~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~e 162 (169)
T 3v7d_A 90 PVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRE 162 (169)
T ss_dssp CCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTT
T ss_pred cccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 35556 379999999999999999999999999999999999999999999999999999999999987
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.90 E-value=1.1e-24 Score=181.41 Aligned_cols=70 Identities=37% Similarity=0.502 Sum_probs=53.1
Q ss_pred ccccccc-----cchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754 10 ILLFLDW-----YLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79 (277)
Q Consensus 10 ~~~f~Dw-----~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e 79 (277)
...+.+| .+|..+||+|+.|||||+|++|+++||++||+||+||||+|||++|||++||||||+++||++
T Consensus 80 ~~~i~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 80 DDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRE 154 (160)
T ss_dssp ---------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 3455566 489999999999999999999999999999999999999999999999999999999999876
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.88 E-value=2.1e-23 Score=172.54 Aligned_cols=62 Identities=37% Similarity=0.577 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhhccccc
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLNN 79 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEeEIr~e 79 (277)
+|.++||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||+++||++
T Consensus 94 id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~e 155 (159)
T 2ast_A 94 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKE 155 (159)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999876
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.84 E-value=5.6e-22 Score=162.09 Aligned_cols=53 Identities=40% Similarity=0.633 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 70 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp 70 (277)
+|.++||+|+.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus 89 vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 89 VDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp SCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999997
No 5
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=97.43 E-value=2e-05 Score=60.76 Aligned_cols=27 Identities=11% Similarity=-0.057 Sum_probs=23.9
Q ss_pred cccccccccchhHHHHHHHHHhhccCC
Q 023754 9 SILLFLDWYLITAGFIKYQAAQISLQL 35 (277)
Q Consensus 9 s~~~f~Dw~vD~~~LfdLi~AANYLdI 35 (277)
+...+.+|.+|+++||+|+.|||||+|
T Consensus 70 ~~~~i~~w~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 70 SSTEIPEFPIAPEIALELLMAANFLDC 96 (96)
T ss_dssp CCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred CcccCCCcccCHHHHHHHHHHHHHhCc
Confidence 445677899999999999999999997
No 6
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=97.42 E-value=2.4e-05 Score=60.68 Aligned_cols=25 Identities=12% Similarity=-0.043 Sum_probs=22.7
Q ss_pred cccccccchhHHHHHHHHHhhccCC
Q 023754 11 LLFLDWYLITAGFIKYQAAQISLQL 35 (277)
Q Consensus 11 ~~f~Dw~vD~~~LfdLi~AANYLdI 35 (277)
..+.+|.+|+++||+|+.|||||+|
T Consensus 75 ~~i~~w~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 75 DEIPEFEIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCccCCHHHHHHHHHHHHHhCc
Confidence 4567799999999999999999997
No 7
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=96.36 E-value=0.00087 Score=51.04 Aligned_cols=25 Identities=8% Similarity=-0.067 Sum_probs=22.2
Q ss_pred cccccccchhHHHHHHHHHhhccCC
Q 023754 11 LLFLDWYLITAGFIKYQAAQISLQL 35 (277)
Q Consensus 11 ~~f~Dw~vD~~~LfdLi~AANYLdI 35 (277)
....+|++|.+.||+|+.|||||+.
T Consensus 73 ~~i~~~~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 73 TEIPEFPIAPEIALELLMAANFLDC 97 (97)
T ss_dssp SCCCCCCCCGGGHHHHHHHHHHHTC
T ss_pred CCCCcCcCCHHHHHHHHHHHhhhCC
Confidence 4567889999999999999999983
No 8
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=92.99 E-value=0.024 Score=44.40 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEE 57 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEE 57 (277)
++.+.+.+|+.||++|+|..|.++|++.+...+.|++|..
T Consensus 87 i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~~ 126 (135)
T 2yy9_A 87 LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSG 126 (135)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC----------
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCCC
Confidence 4557799999999999999999999999999999887753
No 9
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=88.64 E-value=0.31 Score=36.98 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=29.3
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARII 50 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~I 50 (277)
++.+.+.+|+.||++|+|++|.++|+..+..+|
T Consensus 89 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 89 AKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999998765
No 10
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=87.80 E-value=0.29 Score=37.90 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALAR 48 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~ 48 (277)
++.+.+.+|+.||++|+|..|.++|++++.+
T Consensus 87 i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 87 LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 4567899999999999999999999998754
No 11
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=87.21 E-value=0.41 Score=35.12 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=28.3
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARI 49 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~ 49 (277)
++.+.+.+|+.||++++++.|.++|++.+...
T Consensus 77 ~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 77 LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 45578899999999999999999999998764
No 12
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=85.89 E-value=0.86 Score=35.74 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=34.2
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIR 59 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIR 59 (277)
++...+.+|+.||++++|+.|.+.|++.+...+...+.-++-
T Consensus 100 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 141 (172)
T 3htm_A 100 NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 141 (172)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445678999999999999999999999998777665554443
No 13
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=85.11 E-value=0.49 Score=35.91 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=26.5
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALA 47 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA 47 (277)
++.+.+.+|+.||++|+|+.|.++|++.++
T Consensus 88 i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 88 LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445679999999999999999999998874
No 14
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=83.04 E-value=0.78 Score=34.29 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALA 47 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA 47 (277)
++.+.+.+|+.||++|+|+.|.++|++.+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 86 LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445689999999999999999999998763
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=82.04 E-value=1.1 Score=33.58 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRAL 46 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~I 46 (277)
++.+.+.+|+.||++++|++|.++|++.+
T Consensus 91 ~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 91 VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 34578999999999999999999998865
No 16
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=82.00 E-value=0.34 Score=37.73 Aligned_cols=34 Identities=9% Similarity=-0.106 Sum_probs=29.0
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHh
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIE 51 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IK 51 (277)
++.+.+.+|+.||++|+|..|.+.|++.+...|.
T Consensus 101 i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~ 134 (138)
T 2z8h_A 101 LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFL 134 (138)
T ss_dssp CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCS
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 4556799999999999999999999998865544
No 17
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=81.67 E-value=1.4 Score=37.85 Aligned_cols=42 Identities=12% Similarity=0.034 Sum_probs=35.2
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIR 59 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIR 59 (277)
++...+.+|+.||++|+|.+|.+.|+..+...+.-.+.-.|.
T Consensus 107 i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~ 148 (279)
T 3i3n_A 107 VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH 148 (279)
T ss_dssp EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence 455679999999999999999999999998887666655554
No 18
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=81.50 E-value=0.59 Score=35.66 Aligned_cols=38 Identities=16% Similarity=0.010 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTP 55 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSp 55 (277)
+....+.+|+.||++++|+.|.++|+..+...+...+.
T Consensus 91 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 91 NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp TGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 34567889999999999999999999999877654433
No 19
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=80.89 E-value=1.1 Score=33.98 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALA 47 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA 47 (277)
++.+.+.+|+.||++|+|..|.++|++.+.
T Consensus 95 ~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 95 LREGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455789999999999999999999998875
No 20
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=78.26 E-value=0.75 Score=34.85 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=25.6
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALA 47 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA 47 (277)
++.+.+.+|+.||++|+|++|.++|++.+.
T Consensus 86 ~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 86 LTSGNRDQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred cCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 345678999999999999999999998764
No 21
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=77.99 E-value=1.2 Score=37.63 Aligned_cols=41 Identities=22% Similarity=0.068 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEI 58 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEI 58 (277)
++.+.+.+|+.||++|+|+.|.+.|+..+...+.-.+.-.|
T Consensus 99 i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~~~i 139 (256)
T 3hve_A 99 LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGI 139 (256)
T ss_dssp CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTTHHH
T ss_pred ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhHHHH
Confidence 45567999999999999999999999999877655544443
No 22
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=74.39 E-value=2.9 Score=36.20 Aligned_cols=40 Identities=20% Similarity=0.098 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHH
Q 023754 19 ITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEI 58 (277)
Q Consensus 19 D~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEI 58 (277)
....+.+|+.||++++++.|..+|...+...+.-.++-++
T Consensus 241 ~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~ 280 (312)
T 3hqi_A 241 LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEI 280 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHH
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4578899999999999999999999998766655554443
No 23
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=69.05 E-value=0.72 Score=35.31 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=21.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALAR 48 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~ 48 (277)
++.+.+.+|+.||++|+|..|.+.|++.+..
T Consensus 96 i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 96 MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp CCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566799999999999999999999988754
No 24
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=57.05 E-value=0.84 Score=34.82 Aligned_cols=29 Identities=10% Similarity=-0.033 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRAL 46 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~I 46 (277)
++.+.+.+|+.||++|+|+.|.+.|++.+
T Consensus 94 i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 94 LSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp EETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred cCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 45567999999999999999999998754
No 25
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=55.45 E-value=0.54 Score=35.65 Aligned_cols=27 Identities=15% Similarity=0.035 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSR 44 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk 44 (277)
++.+.+.+|+.||++|+|..|.++|++
T Consensus 97 ~~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 97 LSRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp ECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred ECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456789999999999999999998865
No 26
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=42.20 E-value=35 Score=25.55 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=33.9
Q ss_pred cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.|--+...+|+-++|..-.+-+.- =..||..+-|||++|++..|.
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~r----We~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGF----WSEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSH----HHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccH----HHHHHHHcCCCCHHHHHHHHH
Confidence 577777788887777655554443 357899999999999998775
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=40.22 E-value=16 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHhHcC------C-CCCCChHhhhcc
Q 023754 43 SRALARIIEGKTPEEIRETFH------L-PDDLTEEEKLEP 76 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg------I-enDfTpEEEeEI 76 (277)
=..||..+.|+|+.++|+.+. | ...+|+||...+
T Consensus 24 W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L 64 (107)
T 2k9n_A 24 WIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLL 64 (107)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHH
Confidence 457899999999999999864 3 236899887654
No 28
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=38.72 E-value=19 Score=26.57 Aligned_cols=44 Identities=7% Similarity=0.108 Sum_probs=29.5
Q ss_pred cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.|--+...+|.-+.|..--+-..= =..||..+ |||++||+..+.
T Consensus 10 ~WT~eE~k~fe~al~~~p~~t~~R----W~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 10 EWTEEDLSQLTRSMVKFPGGTPGR----WEKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp CCCHHHHHHHHHHHHHSCTTCTTH----HHHHHHHH-TSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcH----HHHHHHHh-CCCHHHHHHHHH
Confidence 466666777766666443333322 35677777 999999998875
No 29
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.88 E-value=14 Score=26.23 Aligned_cols=31 Identities=6% Similarity=0.231 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCHHHHHhHcC------CC-CCCChHhh
Q 023754 43 SRALARIIEGKTPEEIRETFH------LP-DDLTEEEK 73 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg------Ie-nDfTpEEE 73 (277)
=..||..+.|+|+.++|+.+. |. ..+|+||.
T Consensus 32 W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 32 WSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 478899999999999999873 22 35777764
No 30
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=37.83 E-value=11 Score=28.40 Aligned_cols=23 Identities=9% Similarity=-0.052 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHhhccCChhHHH
Q 023754 18 LITAGFIKYQAAQISLQLKPLVD 40 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLD 40 (277)
++.+.+.+|+.||++|+|++|.+
T Consensus 93 ~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 93 VRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHT
T ss_pred CCHHHHHHHHHHHHHhCccccCc
Confidence 45678899999999999999875
No 31
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=34.30 E-value=15 Score=27.55 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCHHHHHhHcC------C-CCCCChHhhhcc
Q 023754 43 SRALARIIEGKTPEEIRETFH------L-PDDLTEEEKLEP 76 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg------I-enDfTpEEEeEI 76 (277)
=..||..+.|+|+.++|+.+. | ...+|+||...+
T Consensus 27 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L 67 (105)
T 1gv2_A 27 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 67 (105)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHH
T ss_pred HHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHH
Confidence 467899999999999999874 2 236898887654
No 32
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.36 E-value=27 Score=24.10 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.2
Q ss_pred HHHHHHHHhcCCHHHHHhHcC
Q 023754 43 SRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg 63 (277)
=..||..+.|+|+.|+|+.|.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 31 WQDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 477899999999999998774
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=31.50 E-value=25 Score=27.38 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHhHcC------C-CCCCChHhhhcc
Q 023754 43 SRALARIIEGKTPEEIRETFH------L-PDDLTEEEKLEP 76 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg------I-enDfTpEEEeEI 76 (277)
=..||..+.|+|+.++|+.+. | ...+|+||...+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L 90 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII 90 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHH
Confidence 568899999999999999874 2 236888886554
No 34
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=31.48 E-value=28 Score=25.84 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHhHcC
Q 023754 43 SRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg 63 (277)
=..||..+.|+|+.|+|..|.
T Consensus 40 W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 40 WNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp HHHHHHHHSSCCHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578999999999999999886
No 35
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=31.39 E-value=19 Score=33.81 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=46.5
Q ss_pred cccccccccch-------hH--HHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCChHhhh
Q 023754 9 SILLFLDWYLI-------TA--GFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKL 74 (277)
Q Consensus 9 s~~~f~Dw~vD-------~~--~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTpEEEe 74 (277)
|++.|..|.++ .+ ..|..+.|..-.++..|+...-+-+++-..||+ |--...++++|||+|.-
T Consensus 226 sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 226 TLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp CHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred cHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCCce---eeccccccccCCHHHHH
Confidence 56677778643 22 358889999999999998876665666677887 44555689999998753
No 36
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=30.90 E-value=11 Score=28.81 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=36.4
Q ss_pred cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCC
Q 023754 15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLP 65 (277)
Q Consensus 15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIe 65 (277)
.|--+...+|+-++|..--+-+.-. ..||..+-|||++|++..+-++
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRW----ekIA~~VpGKT~eEVk~hY~~~ 68 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRW----KKVAQYVKGRTPEEVKKHYELE 68 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSS----TTTGGGSCSSCHHHHHGGGC--
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHH----HHHHHHcCCCCHHHHHHHHHHh
Confidence 4888889999999888755554433 4788999999999999998765
No 37
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=27.33 E-value=31 Score=26.66 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=30.5
Q ss_pred cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.|--+.+.+|.-+.+..-.+-. --=..||..+-|+|++|++..|.
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~~----~rW~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDTP----DRWANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCT----THHHHHHHHSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCC----chHHHHHHHcCCCCHHHHHHHHH
Confidence 5766666666555554333321 12468999999999999998886
No 38
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.31 E-value=37 Score=24.16 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCHHHHHhHc
Q 023754 42 TSRALARIIEGKTPEEIRETF 62 (277)
Q Consensus 42 tCk~IA~~IKGKSpEEIRe~F 62 (277)
--..||..+.|+|+.|+|..+
T Consensus 35 ~W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 35 RWQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHHHHhCCCCHHHHHHHH
Confidence 467899999999999999887
No 39
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.12 E-value=32 Score=24.02 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.1
Q ss_pred cccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 15 DWYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 15 Dw~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.|--+...+|.-..+.. + + --..||.+|.|||+.+++.++-
T Consensus 14 ~WT~eE~~~F~~~~~~~--g-k-----~w~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 14 VWTDHEKEIFKDKFIQH--P-K-----NFGLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp SCCHHHHHHHHHHHHHS--T-T-----CHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--C-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 35555556665554443 2 2 2367899999999999998763
No 40
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=26.62 E-value=50 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 40 DLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 40 DLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
-.++..++.+|+|||++|..++.+
T Consensus 68 ~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 68 IASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHH
Confidence 445567888999999999998754
No 41
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=25.85 E-value=56 Score=26.35 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHhHcC
Q 023754 41 LTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 41 LtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.++..++.+|+|||++|..++..
T Consensus 69 ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 69 ASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp HHHHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 45567888999999999998874
No 42
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=25.15 E-value=22 Score=31.84 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=29.0
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCCCh
Q 023754 23 FIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTE 70 (277)
Q Consensus 23 LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDfTp 70 (277)
+-.|+.||..|++-.. ++.|-.+++||+.||||+++.+
T Consensus 245 ~~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~~~ 282 (322)
T 4eo3_A 245 VGNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDHVL 282 (322)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTSEE
T ss_pred HHHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCCEE
Confidence 3478888888888643 3567789999999999987543
No 43
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=25.03 E-value=20 Score=26.50 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=28.1
Q ss_pred ccchhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcC
Q 023754 16 WYLITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 16 w~vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
|--+.+.+|.-+.+..-.+. .--=..||..|-|+|+.|+|..|.
T Consensus 21 WT~eEd~~L~~al~~~g~~~----~~rW~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 21 WTQNQQKLLELALQQYPRGS----SDCWDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp CCHHHHHHHHHHHHHSCSSS----HHHHHHHGGGCSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCC----CchHHHHHHHcCCCCHHHHHHHHH
Confidence 55555555544433322221 123568999999999999999875
No 44
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=25.02 E-value=1.5e+02 Score=22.78 Aligned_cols=49 Identities=22% Similarity=0.267 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHhhccCChhHHHHHHHHHHHHHhcC--CHHHHHhHcCCCC
Q 023754 18 LITAGFIKYQAAQISLQLKPLVDLTSRALARIIEGK--TPEEIRETFHLPD 66 (277)
Q Consensus 18 vD~~~LfdLi~AANYLdIk~LLDLtCk~IA~~IKGK--SpEEIRe~FgIen 66 (277)
++.+..-.|......|..+.|.....+.++..-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 344555566677778888999999999999988885 7999999999864
No 45
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=24.74 E-value=46 Score=22.88 Aligned_cols=20 Identities=25% Similarity=0.429 Sum_probs=17.6
Q ss_pred HHHHHHHHh-cCCHHHHHhHc
Q 023754 43 SRALARIIE-GKTPEEIRETF 62 (277)
Q Consensus 43 Ck~IA~~IK-GKSpEEIRe~F 62 (277)
-..||..+. |+|+.|+|+.|
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 578899999 99999999876
No 46
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=24.16 E-value=62 Score=26.40 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHhHcC
Q 023754 41 LTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 41 LtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.++..++.+|+|||++|..++..
T Consensus 71 ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 71 ASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp HHHHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 45567788999999999998864
No 47
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=23.45 E-value=43 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=17.9
Q ss_pred HHHHHHHHhcCCHHHHHhHcC
Q 023754 43 SRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg 63 (277)
-..||.++.+|||+||.+.|.
T Consensus 58 Fa~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 58 FSVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHH
Confidence 345899999999999999885
No 48
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=23.36 E-value=32 Score=26.85 Aligned_cols=19 Identities=47% Similarity=0.735 Sum_probs=17.0
Q ss_pred hcCCHHHHHhHcCCCCCCC
Q 023754 51 EGKTPEEIRETFHLPDDLT 69 (277)
Q Consensus 51 KGKSpEEIRe~FgIenDfT 69 (277)
-|.||+|-|+.||++.|+.
T Consensus 42 hgltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 42 HSMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp TCSCHHHHHHHTTCGGGCC
T ss_pred cCCCHHHHHHHhCCCCCCc
Confidence 3999999999999999864
No 49
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.09 E-value=1.1e+02 Score=22.69 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHHhcCCHHHHHhHcCCC
Q 023754 48 RIIEGKTPEEIRETFHLP 65 (277)
Q Consensus 48 ~~IKGKSpEEIRe~FgIe 65 (277)
..+.|.|..||-+.+||+
T Consensus 120 ~~~~g~s~~EIA~~lgis 137 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKN 137 (164)
T ss_dssp HHTTTCCHHHHHHHHTCC
T ss_pred HHHcCCCHHHHHHHHCCC
Confidence 466788888888888875
No 50
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=22.55 E-value=21 Score=28.74 Aligned_cols=34 Identities=9% Similarity=0.195 Sum_probs=24.5
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHhcCCHHHHHhHcCCCCCC
Q 023754 25 KYQAAQISLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDL 68 (277)
Q Consensus 25 dLi~AANYLdIk~LLDLtCk~IA~~IKGKSpEEIRe~FgIenDf 68 (277)
.|+.||..|+|... .|.|-.++++++.|||++++
T Consensus 142 nl~LaA~~~Glgsc----------~~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 142 NLMQVVRVYGYDSV----------PMRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp HHHHHHHHTTCEEC----------CBCCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHcCCCee----------eecccCHHHHHHHhCcCCCc
Confidence 66777777776543 23456789999999998665
No 51
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.36 E-value=79 Score=18.64 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=14.5
Q ss_pred HHhcCCHHHHHhHcCCC
Q 023754 49 IIEGKTPEEIRETFHLP 65 (277)
Q Consensus 49 ~IKGKSpEEIRe~FgIe 65 (277)
...|.|..+|.+.|||+
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 45789999999999986
No 52
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=22.34 E-value=1.5e+02 Score=21.01 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=15.3
Q ss_pred HHhcCCHHHHHhHcCCC
Q 023754 49 IIEGKTPEEIRETFHLP 65 (277)
Q Consensus 49 ~IKGKSpEEIRe~FgIe 65 (277)
.+.|+|..||-+.+||+
T Consensus 50 ~~~g~s~~eIA~~lgis 66 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIA 66 (92)
T ss_dssp HTSCCCHHHHHHHHTSC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 47899999999999986
No 53
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=22.22 E-value=38 Score=26.44 Aligned_cols=35 Identities=14% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCHHHHHhHcC------CC-CCCChHhhhccc
Q 023754 43 SRALARIIEGKTPEEIRETFH------LP-DDLTEEEKLEPL 77 (277)
Q Consensus 43 Ck~IA~~IKGKSpEEIRe~Fg------Ie-nDfTpEEEeEIr 77 (277)
-..||..+.|+|+.++|+.+. +. ..+|+||...+.
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~ 74 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHH
Confidence 678999999999999999864 32 358998876543
No 54
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=21.90 E-value=81 Score=26.14 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHhHcC
Q 023754 41 LTSRALARIIEGKTPEEIRETFH 63 (277)
Q Consensus 41 LtCk~IA~~IKGKSpEEIRe~Fg 63 (277)
.++..++.+|+|||++|+.++..
T Consensus 70 ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 70 ASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Confidence 44566788999999999998865
Done!