Query 023756
Match_columns 277
No_of_seqs 113 out of 1027
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 06:25:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02800 imidazoleglycerol-pho 100.0 2.6E-95 6E-100 665.2 23.6 241 23-275 12-260 (261)
2 COG0131 HisB Imidazoleglycerol 100.0 6.3E-94 1.4E-98 631.6 19.9 194 79-274 2-195 (195)
3 PRK00951 hisB imidazoleglycero 100.0 4.6E-93 1E-97 629.1 21.3 194 80-274 2-195 (195)
4 PRK13598 hisB imidazoleglycero 100.0 1E-92 2.2E-97 625.8 21.4 192 80-274 2-193 (193)
5 cd07914 IGPD Imidazoleglycerol 100.0 4.5E-92 9.9E-97 620.7 20.0 190 83-274 1-190 (190)
6 PRK05446 imidazole glycerol-ph 100.0 3.4E-84 7.5E-89 612.9 21.0 194 76-274 161-354 (354)
7 KOG3143 Imidazoleglycerol-phos 100.0 1.3E-78 2.9E-83 532.2 13.3 214 45-275 6-219 (219)
8 PF00475 IGPD: Imidazoleglycer 100.0 1.8E-74 3.9E-79 491.1 13.5 145 110-254 1-145 (145)
9 PRK05446 imidazole glycerol-ph 97.3 0.00052 1.1E-08 66.3 6.5 78 81-162 254-341 (354)
10 PRK13598 hisB imidazoleglycero 97.2 0.00067 1.5E-08 61.3 6.3 79 81-162 91-180 (193)
11 PRK00951 hisB imidazoleglycero 97.2 0.0011 2.4E-08 60.0 7.6 71 177-258 11-84 (195)
12 cd07914 IGPD Imidazoleglycerol 97.2 0.00077 1.7E-08 60.7 6.5 79 81-162 87-176 (190)
13 PLN02800 imidazoleglycerol-pho 97.2 0.00092 2E-08 62.8 7.2 79 81-162 153-243 (261)
14 PF00475 IGPD: Imidazoleglycer 97.1 0.0028 6.1E-08 55.0 8.4 76 80-158 59-145 (145)
15 COG0131 HisB Imidazoleglycerol 96.7 0.0081 1.8E-07 54.4 8.5 79 169-258 4-85 (195)
16 KOG3143 Imidazoleglycerol-phos 93.8 0.1 2.3E-06 47.3 4.9 45 213-258 61-108 (219)
17 COG2100 Predicted Fe-S oxidore 67.1 18 0.00038 36.3 6.7 110 96-241 161-273 (414)
18 COG4047 Uncharacterized protei 61.4 7.8 0.00017 36.3 3.0 86 144-240 120-223 (243)
19 TIGR00321 dhys deoxyhypusine s 47.0 21 0.00045 34.6 3.4 74 91-181 45-125 (301)
20 PF03719 Ribosomal_S5_C: Ribos 42.3 58 0.0013 25.1 4.7 36 215-250 25-61 (74)
21 PRK00805 putative deoxyhypusin 38.1 25 0.00054 34.4 2.5 74 93-181 46-127 (329)
22 PRK02492 deoxyhypusine synthas 38.0 25 0.00054 34.7 2.5 69 93-179 58-139 (347)
23 PRK02301 putative deoxyhypusin 38.0 24 0.00052 34.4 2.3 75 92-181 56-138 (316)
24 KOG3414 Component of the U4/U6 37.4 18 0.00039 31.6 1.3 39 154-192 11-56 (142)
25 cd00419 Ferrochelatase_C Ferro 33.7 73 0.0016 26.7 4.4 46 113-159 77-122 (135)
26 PRK03971 putative deoxyhypusin 32.7 43 0.00093 32.9 3.2 71 92-178 65-144 (334)
27 PRK00770 deoxyhypusine synthas 32.3 39 0.00084 33.8 2.8 73 93-179 51-132 (384)
28 PRK01221 putative deoxyhypusin 32.1 14 0.00029 36.0 -0.3 72 95-180 56-135 (312)
29 COG1899 DYS1 Deoxyhypusine syn 30.9 43 0.00093 32.9 2.8 82 84-179 45-134 (318)
30 PRK00132 rpsI 30S ribosomal pr 28.1 1.3E+02 0.0028 25.8 4.9 52 82-137 7-70 (130)
31 cd01209 SHC SHC phosphotyrosin 27.6 35 0.00075 30.5 1.5 71 90-160 73-156 (160)
32 PF10747 DUF2522: Protein of u 26.9 1.8E+02 0.004 25.4 5.7 69 152-231 56-126 (142)
33 PRK02220 4-oxalocrotonate taut 26.0 1.5E+02 0.0033 20.6 4.4 33 227-260 3-35 (61)
34 PF13558 SbcCD_C: Putative exo 25.3 37 0.00081 26.3 1.1 32 149-181 42-73 (90)
35 PF02431 Chalcone: Chalcone-fl 25.1 1.8E+02 0.0039 25.5 5.5 48 209-256 58-106 (199)
36 PRK01964 4-oxalocrotonate taut 22.2 2E+02 0.0043 20.5 4.4 33 228-261 4-36 (64)
37 COG1255 Uncharacterized protei 22.0 99 0.0022 26.8 3.1 30 102-133 13-42 (129)
No 1
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=100.00 E-value=2.6e-95 Score=665.19 Aligned_cols=241 Identities=75% Similarity=1.064 Sum_probs=220.6
Q ss_pred eeccCcccccccccccchhcccc-------hhhcccccCCcccCCCCCCCCCCCCCccCcCCCCcceEEEEeeeCCeEEE
Q 023756 23 LVKPKTNLSRKLLPISTQYCSST-------RRMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVS 95 (277)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~a~i~R~TkET~I~ 95 (277)
++||+++ ++.++|.++.+.++. ++++. +++++++|++.. +++....|+++++|+|+||+|+
T Consensus 12 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~R~a~v~R~TkET~I~ 79 (261)
T PLN02800 12 LLRPKLS-FIDLLPRRAAIVSSPSSSLPRFLRMES--QLRQSISCAASS---------SSSNALGRIGEVKRVTKETNVS 79 (261)
T ss_pred hcCCCcc-ccccccccccccccccccccccccccc--ccCCCccccccc---------CCCCccceeEEEEecccceEEE
Confidence 4789999 888888887766553 33333 455666666533 3444467999999999999999
Q ss_pred EEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHHhcCCccccceecceec
Q 023756 96 VKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTA 175 (277)
Q Consensus 96 v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALgdk~GI~RyG~a~v 175 (277)
|+|||||+|.+.|+||||||||||++|++||+|||+|+|+||++||+|||+|||||+|||||+||||||+||+|||++++
T Consensus 80 v~l~LDG~G~~~i~TGi~FlDHML~~~a~Hg~fdL~V~a~GDl~vD~HHtvEDvgI~LG~Al~~ALGdk~GI~RyG~a~v 159 (261)
T PLN02800 80 VKINLDGTGVADSSTGIPFLDHMLDQLASHGLFDVHVKATGDLWIDDHHTNEDVALAIGTALLKALGDRKGINRFGDFSA 159 (261)
T ss_pred EEEEeCCCCceeeecCccHHHHHHHHHHHHcCCCeEEEEecCccccCCCchhhhhhhHHHHHHHHhcCccccceeEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEc-ccCChHHHHHHHHHHHHHHHH
Q 023756 176 PLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL-AGKNSHHIIEATFKAFARALR 254 (277)
Q Consensus 176 PMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l-~G~N~HHiiEA~FKAfgrALr 254 (277)
||||||++|+|||||||||+|+++|+.++||+|++||++|||++|+++++|||||+++ +|+|+||++||+|||||+|||
T Consensus 160 PMDEALa~vavDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~~G~N~HH~~EA~FKAfgrALr 239 (261)
T PLN02800 160 PLDEALIEVVLDLSGRPYLGYNLEIPTERVGDLDTEMVEHFFQSLVNNSGMTVHIRQLAAGKNSHHIIEATAKAFGRALR 239 (261)
T ss_pred cccceeEEEEEECCCCCceeecCCCCccccCCCchHHHHHHHHHHHhcCCCEEEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred HhhhcCCCCCCCCCCCccccc
Q 023756 255 QATEYDPRRRGTIPSSKGVLL 275 (277)
Q Consensus 255 ~A~~~~~~~~g~vpSTKGvL~ 275 (277)
+|+++++++.|.+|||||+|.
T Consensus 240 ~A~~~~~~~~g~vpSTKG~L~ 260 (261)
T PLN02800 240 QCAEVDPRRAGTVASSKGTLS 260 (261)
T ss_pred HHhccCCCcCCCCCCCCeecC
Confidence 999999866566999999984
No 2
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.3e-94 Score=631.61 Aligned_cols=194 Identities=58% Similarity=0.945 Sum_probs=190.7
Q ss_pred CcceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHH
Q 023756 79 SGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL 158 (277)
Q Consensus 79 ~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~ 158 (277)
.+|++++.|+|+||+|+|+|||||+|+++|+||||||||||+||++||+|||+|+|+||++||+|||||||||+|||||+
T Consensus 2 ~~R~a~v~R~T~ET~I~V~i~lDg~G~~~i~TGv~FfDHML~~~a~H~~~dl~V~a~GDl~iDdHHtvED~gIaLGqAl~ 81 (195)
T COG0131 2 AMRTAEVTRKTKETDIEVSLDLDGTGKSKIDTGVGFFDHMLDQLARHGGFDLEVSAKGDLHIDDHHTVEDTGIALGQALK 81 (195)
T ss_pred CCceeEEEecccceEEEEEEEcCCCCceeecCCCchHHHHHHHHHHhCCCceEEEEccCccccccchHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCCh
Q 023756 159 QALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNS 238 (277)
Q Consensus 159 ~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~ 238 (277)
||||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||++||++++||||+.+++|+|+
T Consensus 82 ~AlGdk~GI~Rfg~~~vPMDEaL~~~~vDlSGRp~lv~~~~f~~~~vG~~~te~v~hFf~sla~~a~itlHi~~~~G~N~ 161 (195)
T COG0131 82 EALGDKRGIRRFGSAYVPMDEALARVAVDLSGRPYLVFNAEFTREKVGDFDTELVEHFFRSLANNAGITLHLSVLYGKND 161 (195)
T ss_pred HHhcccccceecccccccchhhhheeEEecCCCeeEEEecccCccccCCcchhhHHHHHHHHHHhcCcEEEEEeccCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccc
Q 023756 239 HHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVL 274 (277)
Q Consensus 239 HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL 274 (277)
||++||+|||||||||+|++++++.+ +|||||+|
T Consensus 162 HH~iEa~FKA~arALr~A~~i~~~~~--vpSTKGvL 195 (195)
T COG0131 162 HHIIEALFKAFARALRQAVEIDGRQA--VPSTKGVL 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcc--CCCCCCcC
Confidence 99999999999999999999998753 99999997
No 3
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=100.00 E-value=4.6e-93 Score=629.11 Aligned_cols=194 Identities=60% Similarity=0.997 Sum_probs=190.1
Q ss_pred cceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHH
Q 023756 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (277)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ 159 (277)
+|+++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+|||+|||||+|||||+|
T Consensus 2 ~R~a~v~R~T~ET~I~v~l~LDG~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~ 81 (195)
T PRK00951 2 MRTAEVERKTKETDISVELNLDGTGKSDIDTGVGFLDHMLDQFARHGLFDLTVKAKGDLHIDDHHTVEDVGIVLGQALKE 81 (195)
T ss_pred CceEEEEEcccceEEEEEEEeCCCCccceeCCccHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCChH
Q 023756 160 ALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSH 239 (277)
Q Consensus 160 ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~H 239 (277)
|||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||+|||++++|||||++++|+|+|
T Consensus 82 aLgdk~GI~Ryg~a~~PMDEaL~~v~vDlSGRpyl~~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tlHi~~~~G~N~H 161 (195)
T PRK00951 82 ALGDKKGIRRYGHAYVPMDEALARVAVDLSGRPYLVFDVEFTREKIGTFDTELVREFFEAFANNAGITLHIRVLYGRNAH 161 (195)
T ss_pred HhcCccccceeEeeeechhheeEEEEEECCCCCeEEEecCCCccccCCCchHHHHHHHHHHHhcCCCeEEEEecccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccc
Q 023756 240 HIIEATFKAFARALRQATEYDPRRRGTIPSSKGVL 274 (277)
Q Consensus 240 HiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL 274 (277)
|++||+|||||+|||+|+++++++.+ +|||||+|
T Consensus 162 H~~Ea~FKa~g~ALr~A~~~~~~~~~-vpSTKG~L 195 (195)
T PRK00951 162 HIIEALFKAFARALRMAVEIDPRVAG-VPSTKGVL 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCC-CCCCCcCC
Confidence 99999999999999999999986544 89999997
No 4
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=100.00 E-value=1e-92 Score=625.84 Aligned_cols=192 Identities=44% Similarity=0.655 Sum_probs=188.5
Q ss_pred cceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHH
Q 023756 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (277)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ 159 (277)
.|+++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+|||||||||+|||||+|
T Consensus 2 ~R~a~i~R~T~ET~I~v~l~Ldg~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~ 81 (193)
T PRK13598 2 SRNANITRETKETKIEVFLDIDRKGEIKVSTPVPFFNHMLITLLTYMNSTATVSATDKLPYDDHHIVEDVAITLGLAIKE 81 (193)
T ss_pred cceEEEEEcccceEEEEEEEeCCCCceEEecCCchHHHHHHHHHHHcCCCeEEEEecCccccCCCchhhhhhhHHHHHHH
Confidence 38899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCChH
Q 023756 160 ALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSH 239 (277)
Q Consensus 160 ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~H 239 (277)
|||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||+|||+++++||||++++|+|+|
T Consensus 82 Algdk~gI~RyG~a~vPMDEaLa~~~vDlsGRpylv~~~~~~~~~iG~~~~elv~~Ff~s~a~~a~~tlHi~~~~G~N~H 161 (193)
T PRK13598 82 ALGDKRGIKRFSHQIIPMDEALVLVSLDISGRGMAFVNLNLKRSEIGGLATENIPHFFQSFAYNSGVTLHISQLSGYNTH 161 (193)
T ss_pred HhcCcccceeeecceecchheeeEEEEEcCCCCeEEEccccCccccCCCchhhHHHHHHHHHhcCCCeEEEEEccCCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccc
Q 023756 240 HIIEATFKAFARALRQATEYDPRRRGTIPSSKGVL 274 (277)
Q Consensus 240 HiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL 274 (277)
|++||+|||||+|||+|++++++ + +|||||+|
T Consensus 162 H~~EA~FKA~g~ALr~A~~~~~~--~-vpSTKG~L 193 (193)
T PRK13598 162 HIIEASFKGLGLALYEATRIVDN--E-IRSTKGVL 193 (193)
T ss_pred HHHHHHHHHHHHHHHHHhccCCC--C-CCCCCCCC
Confidence 99999999999999999999875 3 99999997
No 5
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=100.00 E-value=4.5e-92 Score=620.73 Aligned_cols=190 Identities=56% Similarity=0.947 Sum_probs=186.2
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHHhcC
Q 023756 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALG 162 (277)
Q Consensus 83 a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALg 162 (277)
++++|+|+||+|+|+|||||+|+++|+||||||||||++|++||+|||+|+|+||++||+|||+|||||+|||||+||||
T Consensus 1 a~v~R~T~ET~I~v~l~LDg~g~~~i~TGi~FlDHML~~~a~H~~~dL~v~a~GDl~vD~HHtvEDvgI~LG~al~~aLg 80 (190)
T cd07914 1 AEIERKTKETDIEVELNLDGTGKSKIDTGIGFFDHMLTLFARHGGFDLTVKAKGDLEVDDHHTVEDVGIVLGQALKKALG 80 (190)
T ss_pred CeeEecccceEEEEEEEeCCCCccceecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCcchhhhHhhHHHHHHHHhc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCChHHHH
Q 023756 163 DRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHII 242 (277)
Q Consensus 163 dk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~HHii 242 (277)
||+||+|||++++||||||++|+||||||||++|+++|++++||+|++||++|||+|||++++|||||++++|+|+||++
T Consensus 81 dk~GI~RyG~a~~PMDEal~~v~vDlsGRp~l~~~~~~~~~~iG~~~telv~~Ff~s~a~~a~~tlHi~~~~G~N~HH~~ 160 (190)
T cd07914 81 DKKGIRRYGSALVPMDEALARVAVDLSGRPYLVFDAEFPREKIGDFDTELVEEFFRSFANNAGITLHIRVLYGRNDHHII 160 (190)
T ss_pred CccccceeEccccccchhheEEEEECCCCCeEEEecCcCcCccCCCChHHHHHHHHHHHhcCCCeEEEEEeecCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCcccc
Q 023756 243 EATFKAFARALRQATEYDPRRRGTIPSSKGVL 274 (277)
Q Consensus 243 EA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL 274 (277)
||+|||||+|||+|++++++ . .+|||||+|
T Consensus 161 Ea~FKalgrALr~A~~~~~~-~-~vpSTKG~L 190 (190)
T cd07914 161 EAIFKAFARALRQAVAIDGR-G-GVPSTKGVL 190 (190)
T ss_pred HHHHHHHHHHHHHHhCcCCC-C-CCCCCCcCC
Confidence 99999999999999999986 3 499999997
No 6
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=100.00 E-value=3.4e-84 Score=612.89 Aligned_cols=194 Identities=51% Similarity=0.823 Sum_probs=188.8
Q ss_pred CCCCcceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHH
Q 023756 76 AVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT 155 (277)
Q Consensus 76 ~~~~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~ 155 (277)
....+|+++++|+|+||+|+|+|||||+|++.|+||||||||||++|++||+|||+|+|+||++||+|||+|||||||||
T Consensus 161 l~~~~r~~~~~R~t~et~i~~~l~ldg~g~~~i~tgi~f~dhml~~~~~h~~~~l~v~~~gd~~vd~hh~~ed~~i~lG~ 240 (354)
T PRK05446 161 LTKRDRYAHVVRNTKETDIDVEVWLDREGKSKINTGIGFFDHMLDQIATHGGFRLEIKVKGDLHIDDHHTVEDTALALGE 240 (354)
T ss_pred HhcCCceEEEEecccceEEEEEEEeCCCCceeeecCCcHHHHHHHHHHHHcCCCeEEEEecCccccCCchHHHHHHHHHH
Confidence 34557999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEccc
Q 023756 156 ALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAG 235 (277)
Q Consensus 156 Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G 235 (277)
||++|||||+||+|||+ ++||||||++|+||+||||||+|+++|++++||+|++||++|||+|||++++|||||. ++|
T Consensus 241 a~~~alg~~~gi~r~g~-~~pmdeal~~~~~d~sgr~~~~~~~~~~~~~~g~~~~e~~~~f~~~~~~~~~~tlh~~-~~g 318 (354)
T PRK05446 241 ALKQALGDKRGIGRFGF-VLPMDECLARCALDISGRPYLVFKAEFKRERVGDMSTEMVEHFFRSLSDAMGCTLHLK-TKG 318 (354)
T ss_pred HHHHHhcCccccceeee-ccchhheeeEEEEECCCCCeeEEccCCCccccCCCCchHHHHHHHHHHhcCCCEEEEE-ecc
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999997 899
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccc
Q 023756 236 KNSHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVL 274 (277)
Q Consensus 236 ~N~HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL 274 (277)
+|+||++||+|||||+|||+|++++++ + +|||||+|
T Consensus 319 ~n~hh~~ea~fKa~~~al~~a~~~~~~--~-~~stkg~l 354 (354)
T PRK05446 319 KNDHHKVESLFKAFGRALRQAIRVEGN--T-LPSSKGVL 354 (354)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccCCC--C-CCCCCCCC
Confidence 999999999999999999999999875 4 99999997
No 7
>KOG3143 consensus Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-78 Score=532.22 Aligned_cols=214 Identities=60% Similarity=0.879 Sum_probs=203.0
Q ss_pred chhhcccccCCcccCCCCCCCCCCCCCccCcCCCCcceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHh
Q 023756 45 TRRMNSLTTPRASLNPDGDSKHNNGSASTSSAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLAS 124 (277)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~ 124 (277)
.+.|+++.+.+.++.|+.+ ..+.++..|+|+||.+++..|+||.+...++||||||||||++||+
T Consensus 6 alV~r~tnetkisiaiald---------------~apl~ee~~~~~E~~~s~~anq~g~qVi~v~TGIgFLDHM~haLAk 70 (219)
T KOG3143|consen 6 ALVMRSTNETKISIAIALD---------------NAPLGEEKRETKETNVSVKANQDGHQVIDVSTGIGFLDHMLHALAK 70 (219)
T ss_pred hHHhcccccccceEEEecC---------------CCccchhhccccchhheeeecccCceeeecccCcchHHHHHHHHHh
Confidence 4678899999999988742 1256678899999999999999999999999999999999999999
Q ss_pred hcCcceEEEEecCccccCCcccchhhhhHHHHHHHhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCcc
Q 023756 125 HGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQR 204 (277)
Q Consensus 125 HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~ 204 (277)
||||+|.|+|.||++||||||.||+||+||+||+||||+++|++|||+++.|+||||++++||+|||||.+|++++++++
T Consensus 71 H~gwsl~v~~~GDlhIDDHHT~ED~aiAlG~Afk~AlG~~~GvkRFG~~~aPLDEALsr~vvDLSgRPYav~~Lgl~rek 150 (219)
T KOG3143|consen 71 HGGWSLHVRATGDLHIDDHHTNEDVAIALGTAFKKALGERKGVKRFGDFTAPLDEALSRVVVDLSGRPYAVYNLGLPREK 150 (219)
T ss_pred cCCceEEEEecCceeecccccchhHHHHHHHHHHHHHhhhhchhhcccccCcHHHHHhHheeccCCCeeEEEecCCchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCccHHHHHHHHHHhcCceEEEEEcccCChHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccc
Q 023756 205 VGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVLL 275 (277)
Q Consensus 205 IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL~ 275 (277)
+|+|++||++|||+||++.+||||||+|++|+|+||++|+.|||||+|||||.++. +.+.||||||||.
T Consensus 151 VG~lscemipHfl~Sf~~asgiTLHv~cL~GkNdHHr~EsaFKalAvAlR~ATsp~--g~~~vPStKGVL~ 219 (219)
T KOG3143|consen 151 VGTLSCEMIPHFLQSFVNASGITLHVRCLAGKNDHHRIESAFKALAVALRQATSPR--GGGTVPSTKGVLS 219 (219)
T ss_pred cccchHhhHHHHHHHHHhhcCcEEEEEeecCCCchhHHHHHHHHHHHHHHHhcCCC--CCCcCCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999854 4677999999983
No 8
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=100.00 E-value=1.8e-74 Score=491.10 Aligned_cols=145 Identities=61% Similarity=1.041 Sum_probs=131.5
Q ss_pred cCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHHhcCCccccceecceecccccceeEEEEEcC
Q 023756 110 TCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLS 189 (277)
Q Consensus 110 TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDls 189 (277)
||||||||||+||++||+|||+|+|+||++||+|||||||||+|||||+||||||+||+|||++++||||||++|+||+|
T Consensus 1 TGi~F~DHML~~la~h~~~dl~v~a~GDl~vD~HHtvEDvgI~LG~al~~aLgdk~GI~Ryg~a~~PMDEaL~~v~vDls 80 (145)
T PF00475_consen 1 TGIGFFDHMLEQLAKHGGFDLSVKAKGDLEVDDHHTVEDVGIVLGQALRQALGDKRGINRYGSASVPMDEALARVAVDLS 80 (145)
T ss_dssp -S-HHHHHHHHHHHHHHT-EEEEEEEC-TTT-CHHHHHHHHHHHHHHHHHHHTT-TTB--EEEEEEEETTEEEEEEEEES
T ss_pred CCCchHHHHHHHHHHHCCCCEEEEEeCCCCcCcceehhhHHHHHHHHHHHHhccccCceeeeccccchhhhhheeEEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCChHHHHHHHHHHHHHHHH
Q 023756 190 GRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALR 254 (277)
Q Consensus 190 GRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~HHiiEA~FKAfgrALr 254 (277)
||||++|+++|++++||+|++||++|||+|||++++|||||++++|+|+||++||+|||||||||
T Consensus 81 GRp~l~~~~~~~~~~iG~~~~el~~~F~~sla~~~~~tlHi~~~~G~N~HH~~Ea~FKa~grALR 145 (145)
T PF00475_consen 81 GRPYLVFNGEFPREKIGDFDTELVEHFFRSLANNAGITLHIRVLYGENDHHIIEAIFKAFGRALR 145 (145)
T ss_dssp SS-EEEEE---SSSEETTEETTHHHHHHHHHHHHHTEEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecccCccccCCCChhhHHHHHHHHHHhCCceEEEEEEeCCChHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999998
No 9
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.29 E-value=0.00052 Score=66.32 Aligned_cols=78 Identities=23% Similarity=0.317 Sum_probs=65.9
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhh
Q 023756 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVG 150 (277)
Q Consensus 81 R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGI----------gFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvg 150 (277)
|.+. .=---|+-+.|.||+.|++-...+.+. .-+.|.+.+|+.++++.|.|+..|+ ++||.+|=+-
T Consensus 254 r~g~-~~pmdeal~~~~~d~sgr~~~~~~~~~~~~~~g~~~~e~~~~f~~~~~~~~~~tlh~~~~g~---n~hh~~ea~f 329 (354)
T PRK05446 254 RFGF-VLPMDECLARCALDISGRPYLVFKAEFKRERVGDMSTEMVEHFFRSLSDAMGCTLHLKTKGK---NDHHKVESLF 329 (354)
T ss_pred eeee-ccchhheeeEEEEECCCCCeeEEccCCCccccCCCCchHHHHHHHHHHhcCCCEEEEEeccC---ChHHHHHHHH
Confidence 6665 556789999999999998765544332 2478999999999999999998887 6799999999
Q ss_pred hhHHHHHHHhcC
Q 023756 151 LAIGTALLQALG 162 (277)
Q Consensus 151 I~LG~Al~~ALg 162 (277)
=+||+||++|+.
T Consensus 330 Ka~~~al~~a~~ 341 (354)
T PRK05446 330 KAFGRALRQAIR 341 (354)
T ss_pred HHHHHHHHHHhc
Confidence 999999999995
No 10
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=97.25 E-value=0.00067 Score=61.25 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=63.5
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCC----------ccHHHHHHHHHhhcCcceEEE-EecCccccCCcccchh
Q 023756 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCI----------PFLDHMLDQLASHGLFDVHVR-ATGDIHIDDHHTNEDV 149 (277)
Q Consensus 81 R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGI----------gFLDHML~~la~HsgfdL~v~-a~GDl~VD~HHtvEDv 149 (277)
|.+...=-=.|+-+.+.|||.|+.-+..+-+. --+-|.+.+|+.++++.|.|+ ..|+ ++||.+|=+
T Consensus 91 RyG~a~vPMDEaLa~~~vDlsGRpylv~~~~~~~~~iG~~~~elv~~Ff~s~a~~a~~tlHi~~~~G~---N~HH~~EA~ 167 (193)
T PRK13598 91 RFSHQIIPMDEALVLVSLDISGRGMAFVNLNLKRSEIGGLATENIPHFFQSFAYNSGVTLHISQLSGY---NTHHIIEAS 167 (193)
T ss_pred eeecceecchheeeEEEEEcCCCCeEEEccccCccccCCCchhhHHHHHHHHHhcCCCeEEEEEccCC---ChHHHHHHH
Confidence 44443334579999999999998755443322 236799999999999999997 6686 679999999
Q ss_pred hhhHHHHHHHhcC
Q 023756 150 GLAIGTALLQALG 162 (277)
Q Consensus 150 gI~LG~Al~~ALg 162 (277)
-=+||+||++|+.
T Consensus 168 FKA~g~ALr~A~~ 180 (193)
T PRK13598 168 FKGLGLALYEATR 180 (193)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999995
No 11
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=97.24 E-value=0.0011 Score=59.99 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=58.0
Q ss_pred cccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccC---ChHHHHHHHHHHHHHHH
Q 023756 177 LDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGK---NSHHIIEATFKAFARAL 253 (277)
Q Consensus 177 MDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~---N~HHiiEA~FKAfgrAL 253 (277)
=-|+-+.+.|||-|.+-...+.+ .--+.|.+..|+.++++.|.|. ..|+ ++||.+|-+--+||.||
T Consensus 11 T~ET~I~v~l~LDG~g~~~i~TG----------i~FlDHML~~~a~H~~~dL~v~-a~GDl~vD~HHtvEDvgI~LG~al 79 (195)
T PRK00951 11 TKETDISVELNLDGTGKSDIDTG----------VGFLDHMLDQFARHGLFDLTVK-AKGDLHIDDHHTVEDVGIVLGQAL 79 (195)
T ss_pred ccceEEEEEEEeCCCCccceeCC----------ccHHHHHHHHHHHHcCCCeEEE-EecCccccCCchHHHHHHHHHHHH
Confidence 35778889999887764333322 2357899999999999999997 5888 88999999999999999
Q ss_pred HHhhh
Q 023756 254 RQATE 258 (277)
Q Consensus 254 r~A~~ 258 (277)
++|+.
T Consensus 80 ~~aLg 84 (195)
T PRK00951 80 KEALG 84 (195)
T ss_pred HHHhc
Confidence 99984
No 12
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=97.23 E-value=0.00077 Score=60.73 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=66.0
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecC----------CccHHHHHHHHHhhcCcceEEE-EecCccccCCcccchh
Q 023756 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTC----------IPFLDHMLDQLASHGLFDVHVR-ATGDIHIDDHHTNEDV 149 (277)
Q Consensus 81 R~a~i~R~TkET~I~v~LnLDG~G~~~I~TG----------IgFLDHML~~la~HsgfdL~v~-a~GDl~VD~HHtvEDv 149 (277)
|.+...--=-|+-+.+.|||.|++-+..+.+ .--+.|.+.+|+.++++.|.|+ ..|+ ++||.+|=+
T Consensus 87 RyG~a~~PMDEal~~v~vDlsGRp~l~~~~~~~~~~iG~~~telv~~Ff~s~a~~a~~tlHi~~~~G~---N~HH~~Ea~ 163 (190)
T cd07914 87 RYGSALVPMDEALARVAVDLSGRPYLVFDAEFPREKIGDFDTELVEEFFRSFANNAGITLHIRVLYGR---NDHHIIEAI 163 (190)
T ss_pred eeEccccccchhheEEEEECCCCCeEEEecCcCcCccCCCChHHHHHHHHHHHhcCCCeEEEEEeecC---ChHHHHHHH
Confidence 6666566678999999999999876554432 2347899999999999999997 7787 679999999
Q ss_pred hhhHHHHHHHhcC
Q 023756 150 GLAIGTALLQALG 162 (277)
Q Consensus 150 gI~LG~Al~~ALg 162 (277)
-=+||+||++|+.
T Consensus 164 FKalgrALr~A~~ 176 (190)
T cd07914 164 FKAFARALRQAVA 176 (190)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999985
No 13
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=97.23 E-value=0.00092 Score=62.77 Aligned_cols=79 Identities=27% Similarity=0.456 Sum_probs=66.5
Q ss_pred ceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE--ecCccccCCcccch
Q 023756 81 RIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA--TGDIHIDDHHTNED 148 (277)
Q Consensus 81 R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FLDHML~~la~HsgfdL~v~a--~GDl~VD~HHtvED 148 (277)
|.+...--=.|+-+.|.|||.|+.-...+-+++ -+.|++..|+.++++.|.|++ .|+ ++||.+|=
T Consensus 153 RyG~a~vPMDEALa~vavDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~~G~---N~HH~~EA 229 (261)
T PLN02800 153 RFGDFSAPLDEALIEVVLDLSGRPYLGYNLEIPTERVGDLDTEMVEHFFQSLVNNSGMTVHIRQLAAGK---NSHHIIEA 229 (261)
T ss_pred eeEeeeecccceeEEEEEECCCCCceeecCCCCccccCCCchHHHHHHHHHHHhcCCCEEEEEecccCC---cHHHHHHH
Confidence 667666677999999999999997554443332 478999999999999999987 686 46999999
Q ss_pred hhhhHHHHHHHhcC
Q 023756 149 VGLAIGTALLQALG 162 (277)
Q Consensus 149 vgI~LG~Al~~ALg 162 (277)
+-=++|+||++|+.
T Consensus 230 ~FKAfgrALr~A~~ 243 (261)
T PLN02800 230 TAKAFGRALRQCAE 243 (261)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999995
No 14
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=97.10 E-value=0.0028 Score=55.03 Aligned_cols=76 Identities=26% Similarity=0.419 Sum_probs=61.1
Q ss_pred cceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEEe-cCccccCCcccch
Q 023756 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRAT-GDIHIDDHHTNED 148 (277)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FLDHML~~la~HsgfdL~v~a~-GDl~VD~HHtvED 148 (277)
.|.+...---.|+-+.|.||+.|++-...+-+.+ -+.|.+.+|+.++++.|.|++. |+ ++||.+|=
T Consensus 59 ~Ryg~a~~PMDEaL~~v~vDlsGRp~l~~~~~~~~~~iG~~~~el~~~F~~sla~~~~~tlHi~~~~G~---N~HH~~Ea 135 (145)
T PF00475_consen 59 NRYGSASVPMDEALARVAVDLSGRPYLVFNGEFPREKIGDFDTELVEHFFRSLANNAGITLHIRVLYGE---NDHHIIEA 135 (145)
T ss_dssp --EEEEEEEETTEEEEEEEEESSS-EEEEE---SSSEETTEETTHHHHHHHHHHHHHTEEEEEEEEE-S---SHHHHHHH
T ss_pred eeeeccccchhhhhheeEEEecCCceEEEecccCccccCCCChhhHHHHHHHHHHhCCceEEEEEEeCC---ChHHHHHH
Confidence 3888888899999999999999997655443333 4789999999999999999998 85 56999999
Q ss_pred hhhhHHHHHH
Q 023756 149 VGLAIGTALL 158 (277)
Q Consensus 149 vgI~LG~Al~ 158 (277)
+-=++|+||+
T Consensus 136 ~FKa~grALR 145 (145)
T PF00475_consen 136 IFKAFGRALR 145 (145)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999999985
No 15
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0081 Score=54.45 Aligned_cols=79 Identities=32% Similarity=0.505 Sum_probs=63.2
Q ss_pred eecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccC---ChHHHHHHH
Q 023756 169 RFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGK---NSHHIIEAT 245 (277)
Q Consensus 169 RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~---N~HHiiEA~ 245 (277)
|.+...--=-|+=+.|.||+-|-+....+.+. | -+.|.+.+|+.++++.|-|. ..|+ ++||.+|=.
T Consensus 4 R~a~v~R~T~ET~I~V~i~lDg~G~~~i~TGv-----~-----FfDHML~~~a~H~~~dl~V~-a~GDl~iDdHHtvED~ 72 (195)
T COG0131 4 RTAEVTRKTKETDIEVSLDLDGTGKSKIDTGV-----G-----FFDHMLDQLARHGGFDLEVS-AKGDLHIDDHHTVEDT 72 (195)
T ss_pred ceeEEEecccceEEEEEEEcCCCCceeecCCC-----c-----hHHHHHHHHHHhCCCceEEE-EccCccccccchHHHH
Confidence 34444444568888999999887766555432 2 37899999999999999997 5788 999999999
Q ss_pred HHHHHHHHHHhhh
Q 023756 246 FKAFARALRQATE 258 (277)
Q Consensus 246 FKAfgrALr~A~~ 258 (277)
--|||.||++|+.
T Consensus 73 gIaLGqAl~~AlG 85 (195)
T COG0131 73 GIALGQALKEALG 85 (195)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999983
No 16
>KOG3143 consensus Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=93.81 E-value=0.1 Score=47.34 Aligned_cols=45 Identities=29% Similarity=0.575 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCceEEEEEcccC---ChHHHHHHHHHHHHHHHHHhhh
Q 023756 213 VEHFFQSLVNTSGMTLHIRQLAGK---NSHHIIEATFKAFARALRQATE 258 (277)
Q Consensus 213 v~eFf~sla~~a~iTLHI~~l~G~---N~HHiiEA~FKAfgrALr~A~~ 258 (277)
+.|.+.+||.+++..+|+++ .|+ ++||-.|-..-|+|.|+++|+.
T Consensus 61 LDHM~haLAkH~gwsl~v~~-~GDlhIDDHHT~ED~aiAlG~Afk~AlG 108 (219)
T KOG3143|consen 61 LDHMLHALAKHGGWSLHVRA-TGDLHIDDHHTNEDVAIALGTAFKKALG 108 (219)
T ss_pred HHHHHHHHHhcCCceEEEEe-cCceeecccccchhHHHHHHHHHHHHHh
Confidence 57999999999999999975 565 6999999999999999999974
No 17
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=67.15 E-value=18 Score=36.28 Aligned_cols=110 Identities=25% Similarity=0.456 Sum_probs=80.4
Q ss_pred EEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceE-EEEecCccccCCcccchhhhhHHHHHHHhcCCccccceeccee
Q 023756 96 VKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVH-VRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFT 174 (277)
Q Consensus 96 v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~-v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALgdk~GI~RyG~a~ 174 (277)
++..|||+|. -+=-||+-.++..+..|-+.++. ++.. |-.|-.-+-++|. ..|+.|+.-++
T Consensus 161 lEaHlDGqGE---P~lYP~l~~lVqalk~~~~v~vVSmQTn--------------g~~L~~~lv~eLe-eAGLdRiNlSv 222 (414)
T COG2100 161 LEAHLDGQGE---PLLYPHLVDLVQALKEHKGVEVVSMQTN--------------GVLLSKKLVDELE-EAGLDRINLSV 222 (414)
T ss_pred eEEEecCCCC---CccchhHHHHHHHHhcCCCceEEEEeeC--------------ceeccHHHHHHHH-HhCCceEEeec
Confidence 5667889997 45678999999999999777652 2333 3445556666663 57999999888
Q ss_pred cccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEE--EcccCChHHH
Q 023756 175 APLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIR--QLAGKNSHHI 241 (277)
Q Consensus 175 vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~--~l~G~N~HHi 241 (277)
=-+|+.+|.. +.||- +||.+-+.+--+.+++ ++|.+=|. .+-|-|+-..
T Consensus 223 ~aLDpk~Ak~---L~G~~--------------dYdv~kvle~aE~i~~-a~idvlIaPv~lPG~ND~E~ 273 (414)
T COG2100 223 DALDPKLAKM---LAGRK--------------DYDVKKVLEVAEYIAN-AGIDVLIAPVWLPGVNDDEM 273 (414)
T ss_pred ccCCHHHHHH---hcCcc--------------ccCHHHHHHHHHHHHh-CCCCEEEeeeecCCcChHHH
Confidence 8899988753 22332 5888889999999888 99988775 5689998643
No 18
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.39 E-value=7.8 Score=36.34 Aligned_cols=86 Identities=26% Similarity=0.467 Sum_probs=56.1
Q ss_pred cccchhhhhHHHHHHHhcCCcc-------ccceecceecccccceeEEEEEcCCCCeeEEeecCCCcc-cc----CccCc
Q 023756 144 HTNEDVGLAIGTALLQALGDRK-------GINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQR-VG----TYDTQ 211 (277)
Q Consensus 144 HtvEDvgI~LG~Al~~ALgdk~-------GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~-IG----~~~tE 211 (277)
-..||.+.+++ +|..+||.++ .++=||+|+.|.-- -.||| -|+.+++.+. |- ..-.|
T Consensus 120 ~yyedm~~l~~-~la~~lg~d~esKT~VFsVKmfgYA~r~~~g---------~f~py-p~eIPIPvD~Ri~rlT~~~tne 188 (243)
T COG4047 120 VYYEDMSLLLE-ALARALGADRESKTVVFSVKMFGYAARIVLG---------RFRPY-PFEIPIPVDVRIARLTRKLTNE 188 (243)
T ss_pred HHHhhHHHHHH-HHHHHhCCCcccceEEEEehHhHHHHHHHhc---------CCCCC-CcCCCCcchHHHHHHHHHHhhh
Confidence 45899999998 8999999753 24445555544321 13666 3666555431 11 12223
Q ss_pred cHHHHHHHHHHhcCc-eEEEEE-----cccCChHH
Q 023756 212 LVEHFFQSLVNTSGM-TLHIRQ-----LAGKNSHH 240 (277)
Q Consensus 212 lv~eFf~sla~~a~i-TLHI~~-----l~G~N~HH 240 (277)
-=..||.+.|++.|+ -|||+- ++|.|.|-
T Consensus 189 ~Pq~~W~~iAResGIPpLHiDSILW~~lgg~~~~~ 223 (243)
T COG4047 189 APQKFWDKIARESGIPPLHIDSILWPLLGGERREE 223 (243)
T ss_pred hHHHHHHHHHHhcCCCcceecceecccCCCccccc
Confidence 337899999999999 799982 57888653
No 19
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=46.99 E-value=21 Score=34.57 Aligned_cols=74 Identities=27% Similarity=0.468 Sum_probs=51.4
Q ss_pred CeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHH-------HhcCC
Q 023756 91 ETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL-------QALGD 163 (277)
Q Consensus 91 ET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~-------~ALgd 163 (277)
+..| -|.+-|. -+.+|++ ..+..|.+|+.+|+-|+--|-++ ||+.=++|..-. +.| -
T Consensus 45 ~~~i--fLt~tg~---mvsaGlr---~ii~~Li~~g~Vd~ivtTganl~-------hD~~~~~g~~~~g~f~~dd~~L-r 108 (301)
T TIGR00321 45 EITI--FMGYAGN---LVPSGMR---EIIAYLIQHGMIDALVTTGANLE-------HDLIEALGPTHLGDFAVDDKKL-R 108 (301)
T ss_pred CCeE--EEEeccc---cchhhHH---HHHHHHHHcCCeeEEEeCCCchH-------HHHHHHcCcccccCCCCChHHH-H
Confidence 3444 5555553 4789986 88999999999999999888765 555555542211 111 1
Q ss_pred ccccceecceecccccce
Q 023756 164 RKGINRFGDFTAPLDEAL 181 (277)
Q Consensus 164 k~GI~RyG~a~vPMDEAL 181 (277)
++||+|-|.-++|- |++
T Consensus 109 ~~ginRI~dv~ip~-e~y 125 (301)
T TIGR00321 109 EEGINRIGDVFVPN-ENF 125 (301)
T ss_pred HcCCCccceecCCH-HHH
Confidence 58999999999994 555
No 20
>PF03719 Ribosomal_S5_C: Ribosomal protein S5, C-terminal domain; InterPro: IPR005324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of proteins related to the 30S ribosomal protein S5P from Sulfolobus acidocaldarius (O05641 from SWISSPROT). Ribosomal protein S5 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_E 2XZM_E 2WDK_E 3KNJ_E 3HUY_E 2B9M_E 2Y18_E 1XMQ_E 1IBM_E 3TVF_H ....
Probab=42.35 E-value=58 Score=25.06 Aligned_cols=36 Identities=19% Similarity=0.429 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCc-eEEEEEcccCChHHHHHHHHHHHH
Q 023756 215 HFFQSLVNTSGM-TLHIRQLAGKNSHHIIEATFKAFA 250 (277)
Q Consensus 215 eFf~sla~~a~i-TLHI~~l~G~N~HHiiEA~FKAfg 250 (277)
.-.+.+++-+|+ .+..++..-.|.+..+.|.|+||-
T Consensus 25 ~~vr~il~laGI~Dv~~K~~Gs~n~~n~v~A~~~aL~ 61 (74)
T PF03719_consen 25 GAVRAILELAGIKDVYAKSRGSRNPINVVKATFKALK 61 (74)
T ss_dssp HHHHHHHHHTTESSEEEEEESBSSHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcccccEEeeccCCCChhhHHHHHHHHHH
Confidence 357888999999 677776666799999999999986
No 21
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=38.09 E-value=25 Score=34.44 Aligned_cols=74 Identities=22% Similarity=0.294 Sum_probs=51.9
Q ss_pred EEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHH--------HHhcCCc
Q 023756 93 NVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGDR 164 (277)
Q Consensus 93 ~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al--------~~ALgdk 164 (277)
+-.+-|.+-|. -+++|++ ..+..|.+|+-+|+-|+--|-++ ||+.=++|... .+.| -+
T Consensus 46 ~~~ifL~~tg~---mvsaGlr---~~i~~Li~~g~VD~iVTTgani~-------hD~~~~lg~~~y~g~f~~dd~~L-r~ 111 (329)
T PRK00805 46 DNTIFMGLSGA---MVPAGMR---KIIKWLIRNRYVDVLVSTGANIF-------HDIHEALGFKHYKGSHHVDDEEL-FK 111 (329)
T ss_pred CCeEEEEeccc---hHHHHHH---HHHHHHHHcCCeeEEEeCCCchH-------HHHHHHcCCCeeccCCCCCHHHH-HH
Confidence 33445555553 4789986 79999999999999999888764 56666665111 1122 15
Q ss_pred cccceecceecccccce
Q 023756 165 KGINRFGDFTAPLDEAL 181 (277)
Q Consensus 165 ~GI~RyG~a~vPMDEAL 181 (277)
.||+|-|.-++|- |++
T Consensus 112 ~ginRIgdv~ip~-e~y 127 (329)
T PRK00805 112 EGIDRIYDVFAYE-EEF 127 (329)
T ss_pred cCCCcccccccCH-HHH
Confidence 8999999999994 444
No 22
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=38.00 E-value=25 Score=34.68 Aligned_cols=69 Identities=25% Similarity=0.241 Sum_probs=50.0
Q ss_pred EEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCc-cccCCcccchhhhhHH------------HHHHH
Q 023756 93 NVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDI-HIDDHHTNEDVGLAIG------------TALLQ 159 (277)
Q Consensus 93 ~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl-~VD~HHtvEDvgI~LG------------~Al~~ 159 (277)
+..+-|.+-|. -+++|++ ..+..|.+|+.+|+-|+--|-+ + ||+.=++| ..|.
T Consensus 58 ~~~ifL~~tga---mvsaGlr---~~i~~Li~~~~VD~iVTTganl~e-------eD~~k~~g~~~y~G~f~~dd~~Lr- 123 (347)
T PRK02492 58 ECAVILTLAGS---LSSAGCM---QVYIDLVRNNMVDAIVATGANIVD-------QDFFEALGFKHYQGSPFVDDAVLR- 123 (347)
T ss_pred CCeEEEEeccc---hHHHHHH---HHHHHHHHcCCeeEEEECCCCchH-------HHHHHHcCCCeecCCCCCCHHHHH-
Confidence 44445655553 4799986 7999999999999999877754 3 45554554 3344
Q ss_pred hcCCccccceecceeccccc
Q 023756 160 ALGDRKGINRFGDFTAPLDE 179 (277)
Q Consensus 160 ALgdk~GI~RyG~a~vPMDE 179 (277)
++||+|-|.-++|-|+
T Consensus 124 ----~~ginRIgdv~ip~e~ 139 (347)
T PRK02492 124 ----DLYIDRIYDTYIDEEE 139 (347)
T ss_pred ----HcCCCcccccccChHH
Confidence 5899999999999554
No 23
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=38.00 E-value=24 Score=34.40 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=52.8
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHH--------HHhcCC
Q 023756 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGD 163 (277)
Q Consensus 92 T~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al--------~~ALgd 163 (277)
.+..+-|.+-|. -+++|++ ..+..|.+|+.+|+-|+--|-++ ||+.=++|... .+.|-
T Consensus 56 ~~~~ifL~~tg~---mvsaGlr---~ii~~Li~~~~VD~iVtTganie-------hD~~~~lg~~~y~G~~~~dd~~Lr- 121 (316)
T PRK02301 56 DDVTKFFGLAGA---MVPAGMR---GIVSDLIRDGHIDVLVTTGANLT-------HDVIEAIGGHHHHGTAHAHDEELR- 121 (316)
T ss_pred CCCeEEEEcccc---hhHHHHH---HHHHHHHHcCCeeEEEcCCCchH-------HHHHHHcCCCeeccCCCCCHHHHH-
Confidence 444456666553 4788986 89999999999999998888764 56666665211 11221
Q ss_pred ccccceecceecccccce
Q 023756 164 RKGINRFGDFTAPLDEAL 181 (277)
Q Consensus 164 k~GI~RyG~a~vPMDEAL 181 (277)
++||+|-|.-++|- |++
T Consensus 122 ~~ginRIgd~~ip~-e~y 138 (316)
T PRK02301 122 DEGIDRIYDVYLPQ-EHF 138 (316)
T ss_pred HcCCCccceeCCCh-HHH
Confidence 58999999999994 444
No 24
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=37.40 E-value=18 Score=31.64 Aligned_cols=39 Identities=33% Similarity=0.354 Sum_probs=30.1
Q ss_pred HHHHHHhcCC---ccccceecceecc----cccceeEEEEEcCCCC
Q 023756 154 GTALLQALGD---RKGINRFGDFTAP----LDEALIHVSLDLSGRP 192 (277)
Q Consensus 154 G~Al~~ALgd---k~GI~RyG~a~vP----MDEALa~vaVDlsGRp 192 (277)
|.+.+||+++ |-=+-|||.-.=| |||.|+..+-|+|+=.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa 56 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFA 56 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhce
Confidence 6677777765 4447799977665 9999999999998643
No 25
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=33.74 E-value=73 Score=26.72 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=36.1
Q ss_pred ccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHH
Q 023756 113 PFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (277)
Q Consensus 113 gFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ 159 (277)
|.++.+|+.++..|-=.+.|-+-|= -.|..||.+|+.+-+.+.+.+
T Consensus 77 P~~~~~l~~l~~~G~~~i~v~p~gF-~~D~~Etl~di~~e~~~~~~~ 122 (135)
T cd00419 77 PSTDDALEELAKEGVKNVVVVPIGF-VSDHLETLYELDIEYRELAEE 122 (135)
T ss_pred CCHHHHHHHHHHcCCCeEEEECCcc-ccccHHHHHHHHHHHHHHHHH
Confidence 5689999999999766777777762 244459999999999987664
No 26
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=32.69 E-value=43 Score=32.91 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=51.1
Q ss_pred eEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHHhcCC--------
Q 023756 92 TNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGD-------- 163 (277)
Q Consensus 92 T~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ALgd-------- 163 (277)
.+-.+-|.+-|. -++||++ -.+..|.+|+.+|+-|+--|-++ ||+.=++| ... +|+
T Consensus 65 ~~~~ifL~~tg~---misaGlr---~~i~~Li~~~~Vd~iVtTganle-------hDi~~~l~-~~~--~G~f~~dd~~L 128 (334)
T PRK03971 65 EEATVFLGYTSN---IVSSGLR---EIIAYLVKEKKVDVIVTTAGGVE-------EDFIKCLK-PFI--LGEWDVDGAEL 128 (334)
T ss_pred CCCeEEEEcccc---ccchhHH---HHHHHHHHcCCeeEEEeCCCchH-------HHHHHHhc-ccc--cCCCCCCHHHH
Confidence 333445555543 4799986 89999999999999999888765 56666665 221 222
Q ss_pred -ccccceecceecccc
Q 023756 164 -RKGINRFGDFTAPLD 178 (277)
Q Consensus 164 -k~GI~RyG~a~vPMD 178 (277)
++||+|.|.-++|-|
T Consensus 129 r~~ginRIgnv~ip~e 144 (334)
T PRK03971 129 REKGINRIGNIFVPND 144 (334)
T ss_pred HHcCCCccceeeeChH
Confidence 589999999999954
No 27
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=32.29 E-value=39 Score=33.81 Aligned_cols=73 Identities=23% Similarity=0.339 Sum_probs=50.8
Q ss_pred EEEEEEEeCCCceeeeecCCccHH-HHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHH--------HHhcCC
Q 023756 93 NVSVKINVDGSGVADSSTCIPFLD-HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGD 163 (277)
Q Consensus 93 ~I~v~LnLDG~G~~~I~TGIgFLD-HML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al--------~~ALgd 163 (277)
+..|-|.+-|. -|.+|+ - -.|..|.+|+.+|+-|.--|-++ ||+..+||-.. ...| -
T Consensus 51 ~~tvfLtltga---misaGL---r~~ii~~LIr~g~VD~IVTTGAnl~-------hD~~~alg~~~y~G~~~~dd~~L-r 116 (384)
T PRK00770 51 GVTVGLTLSGA---MTPAGF---GVSALAPLIEAGFIDWIISTGANLY-------HDLHYALGLPLFAGHPFVDDVKL-R 116 (384)
T ss_pred CCcEEEEeccc---hhhhhc---ChHHHHHHHHcCCccEEEcCCccHH-------HHHHHHhCCCcccCCCCCCHHHH-H
Confidence 33445555553 478998 4 37899999999999988877654 78888885111 1111 1
Q ss_pred ccccceecceeccccc
Q 023756 164 RKGINRFGDFTAPLDE 179 (277)
Q Consensus 164 k~GI~RyG~a~vPMDE 179 (277)
++||+|-|.-++|-|+
T Consensus 117 ~~GinRI~dv~ip~e~ 132 (384)
T PRK00770 117 EEGIIRIYDIIFDYDV 132 (384)
T ss_pred HcCCCcccccCcChHH
Confidence 5899999999999543
No 28
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=32.15 E-value=14 Score=35.97 Aligned_cols=72 Identities=22% Similarity=0.406 Sum_probs=51.7
Q ss_pred EEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHH--------HHhcCCccc
Q 023756 95 SVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL--------LQALGDRKG 166 (277)
Q Consensus 95 ~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al--------~~ALgdk~G 166 (277)
.+-|.+-|. -|+||+ -..+..|.+|+.+|+-|+--|-++ ||+.=+||... ...| -++|
T Consensus 56 ~ifL~~tg~---mvs~Gl---r~ii~~Li~~~~VD~iVtTgani~-------hD~~~~lg~~~y~G~~~~dd~~L-r~~G 121 (312)
T PRK01221 56 LRFLSFTAN---LVSTGL---RGLIADLIKRGLFNVVITTCGTLD-------HDIARSFGGVYYKGSFDIDDAML-KDLG 121 (312)
T ss_pred eEEEEecch---hHHHHH---HHHHHHHHHcCCeeEEEeCCCchH-------HHHHHHcCCCeEecCCCCChHHH-HHcC
Confidence 456666553 368995 599999999999999999888764 56666665411 1112 1589
Q ss_pred cceecceecccccc
Q 023756 167 INRFGDFTAPLDEA 180 (277)
Q Consensus 167 I~RyG~a~vPMDEA 180 (277)
|+|-|.-++|-|+-
T Consensus 122 inRIgdv~ip~e~y 135 (312)
T PRK01221 122 IHRLGNVLIPVESY 135 (312)
T ss_pred CCcceeeccChHHH
Confidence 99999999996554
No 29
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=30.88 E-value=43 Score=32.92 Aligned_cols=82 Identities=30% Similarity=0.494 Sum_probs=58.9
Q ss_pred EEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHH-----
Q 023756 84 EVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALL----- 158 (277)
Q Consensus 84 ~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~----- 158 (277)
++-|+-.|-++.+-|.+-|+ -|+||+ -+.+..|-+++.+|+-|+--|-+. ||+.=+||-...
T Consensus 45 ~I~~~m~~~~~tvfl~~tg~---~vssGl---R~iia~LIr~~~idvvVTTgg~l~-------hDi~~~lg~~~~~G~~~ 111 (318)
T COG1899 45 EILREMLESRVTVFLGLTGN---LVSSGL---REIIADLIRNGLIDVVVTTGGNLD-------HDIIKALGGPHYCGSFE 111 (318)
T ss_pred HHHHHHHhhcCEEEEecccc---ccchhH---HHHHHHHHHcCCeEEEEecCCchh-------HHHHHHcCCCeeccCcC
Confidence 34445455556666766553 478997 899999999999999999988653 787777772111
Q ss_pred ---HhcCCccccceecceeccccc
Q 023756 159 ---QALGDRKGINRFGDFTAPLDE 179 (277)
Q Consensus 159 ---~ALgdk~GI~RyG~a~vPMDE 179 (277)
..|- ..||+|-|..++|-|+
T Consensus 112 ~dD~~Lr-~~gi~RIgnv~vp~e~ 134 (318)
T COG1899 112 VDDVELR-EEGINRIGNVFVPNEE 134 (318)
T ss_pred CCHHHHH-HhccccccceecChHH
Confidence 1221 4799999999999654
No 30
>PRK00132 rpsI 30S ribosomal protein S9; Reviewed
Probab=28.11 E-value=1.3e+02 Score=25.80 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=34.1
Q ss_pred eEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHH---------H---HHHHHhhcCcceEEEEecC
Q 023756 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDH---------M---LDQLASHGLFDVHVRATGD 137 (277)
Q Consensus 82 ~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDH---------M---L~~la~HsgfdL~v~a~GD 137 (277)
.+.-+|+|.=..|.+. .|+|.+.|| |.++.+. + |..+-..+.||+.++++|-
T Consensus 7 ~~~GrRK~a~A~v~l~---~G~G~i~IN-g~~~~~yf~~~~~r~~i~~Pl~~~~~~~~~Di~i~V~GG 70 (130)
T PRK00132 7 YGTGRRKTAVARVRLK---PGSGKITVN-GRDLEEYFPRETLRMVVRQPLELTETEGKFDVYVTVKGG 70 (130)
T ss_pred EEEeeCCCeEEEEEEE---cCccEEEEC-CEeHHHHcCCHHHHHHHHHHHHHhCccCceeEEEEEEcC
Confidence 3556777765555543 799998775 5554432 1 2333356899999999984
No 31
>cd01209 SHC SHC phosphotyrosine-binding (PTB) domain. SHC phosphotyrosine-binding (PTB) domain. SHC is a substrate for receptor tyrosine kinases, which can interact with phosphoproteins at NPXY motifs. SHC contains an PTB domain followed by an SH2 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=27.65 E-value=35 Score=30.47 Aligned_cols=71 Identities=14% Similarity=0.098 Sum_probs=41.4
Q ss_pred CCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcc------eEEEEe-cCccccCC------cccchhhhhHHHH
Q 023756 90 KETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFD------VHVRAT-GDIHIDDH------HTNEDVGLAIGTA 156 (277)
Q Consensus 90 kET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~Hsgfd------L~v~a~-GDl~VD~H------HtvEDvgI~LG~A 156 (277)
..|+|.+.|.-+|=....++|+--..+|=|..++.-++-| +.--|+ .|-+--.| -+.+|+..+||||
T Consensus 73 ~~~~V~l~IS~~~v~~~~~~t~~ii~~H~l~~ISfaa~gd~d~~~~~ayIAKd~~~~r~ChVf~~~~~lAq~Ii~TIGQA 152 (160)
T cd01209 73 AGMPITINVSSSSLNLMAQDCKQIIANHHMQSISFASGGDPDTAEYVAYIAKNPDNQRACHVLECPEGLAQDLISTIGQA 152 (160)
T ss_pred cCceEEEEEEeeEEEEeccCchhHHhcCCCcceEEEeCCCCCcceeEEEEEcCCCCCceeEEEEcCCchHHHHHHHHHHH
Confidence 3566776666655445667887777777777666666411 111222 11000001 2478999999999
Q ss_pred HHHh
Q 023756 157 LLQA 160 (277)
Q Consensus 157 l~~A 160 (277)
|.=|
T Consensus 153 F~la 156 (160)
T cd01209 153 FELR 156 (160)
T ss_pred HHHH
Confidence 9854
No 32
>PF10747 DUF2522: Protein of unknown function (DUF2522); InterPro: IPR019683 This entry represents the Sporulation inhibitor of replication (sirA) family of proteins from Bacillus sp. Induction of sporulation in rapidly growing cells inhibits replication; this is thought to be through the action of SirA protein and independent of phosphorylated Spo0A; however SirA protein synthesis is induced by Spo0A [].
Probab=26.88 E-value=1.8e+02 Score=25.40 Aligned_cols=69 Identities=28% Similarity=0.334 Sum_probs=48.0
Q ss_pred hHHHHHHHhcCCccccceecceecc--cccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEE
Q 023756 152 AIGTALLQALGDRKGINRFGDFTAP--LDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLH 229 (277)
Q Consensus 152 ~LG~Al~~ALgdk~GI~RyG~a~vP--MDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLH 229 (277)
-|=+.|.++|..+.|.++.|..+.- -+. ..+.|=+-.|--. . ..-|+++.|.+ ||++|.+-..+-+=
T Consensus 56 ~l~~~L~q~ls~~~~~~~~~n~~~L~~~~k--~~a~l~i~~~~i~-l------~~~Gs~~aet~--~FevLrk~~~~FlA 124 (142)
T PF10747_consen 56 KLHQRLKQALSGKKGYNREGNTYRLLPNEK--GEAALYIKDRRIQ-L------NCSGSYDAETD--FFEVLRKISPCFLA 124 (142)
T ss_pred HHHHHHHHHhcccCCeEeeccEEEEEeCCC--ceEEEEEEccEEE-E------EecCCHHHHHH--HHHHHHhCCCceEE
Confidence 3567899999899999999977653 222 2333434334222 2 23488999988 99999999998886
Q ss_pred EE
Q 023756 230 IR 231 (277)
Q Consensus 230 I~ 231 (277)
++
T Consensus 125 vd 126 (142)
T PF10747_consen 125 VD 126 (142)
T ss_pred Ee
Confidence 65
No 33
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=26.04 E-value=1.5e+02 Score=20.63 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=25.8
Q ss_pred eEEEEEcccCChHHHHHHHHHHHHHHHHHhhhcC
Q 023756 227 TLHIRQLAGKNSHHIIEATFKAFARALRQATEYD 260 (277)
Q Consensus 227 TLHI~~l~G~N~HHiiEA~FKAfgrALr~A~~~~ 260 (277)
.+||....|. +...-.++.+++..++.+++...
T Consensus 3 ~i~i~~~~Gr-s~eqk~~l~~~it~~l~~~~~~p 35 (61)
T PRK02220 3 YVHIKLIEGR-TEEQLKALVKDVTAAVSKNTGAP 35 (61)
T ss_pred EEEEEEcCCC-CHHHHHHHHHHHHHHHHHHhCcC
Confidence 4788878898 45677888999999998887653
No 34
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=25.26 E-value=37 Score=26.31 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHhcCCccccceecceecccccce
Q 023756 149 VGLAIGTALLQALGDRKGINRFGDFTAPLDEAL 181 (277)
Q Consensus 149 vgI~LG~Al~~ALgdk~GI~RyG~a~vPMDEAL 181 (277)
+.++|.-||...++...| ++-+.-.+.||||.
T Consensus 42 ~~l~l~aal~~~~~~~~~-~~~~~~~l~lDEaF 73 (90)
T PF13558_consen 42 FYLALAAALAALYSSSSG-RGDSPRLLFLDEAF 73 (90)
T ss_dssp HHHHHHHHHHHHHHTTST-S-TTBSEEEEESTT
T ss_pred HHHHHHHHHHHHHhhhcC-CCCCcCEEEEeCCC
Confidence 678888899999988665 44445577788875
No 35
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=25.06 E-value=1.8e+02 Score=25.52 Aligned_cols=48 Identities=21% Similarity=0.397 Sum_probs=38.8
Q ss_pred cCccHHHHHHHHHHh-cCceEEEEEcccCChHHHHHHHHHHHHHHHHHh
Q 023756 209 DTQLVEHFFQSLVNT-SGMTLHIRQLAGKNSHHIIEATFKAFARALRQA 256 (277)
Q Consensus 209 ~tElv~eFf~sla~~-a~iTLHI~~l~G~N~HHiiEA~FKAfgrALr~A 256 (277)
+.+.=+.||+.+..+ ..+++.|..++..+-.|..+++.+++..-++++
T Consensus 58 ~~~~~~~~~~~ll~~~~~k~iri~~~R~~~~~~l~d~~~~~i~~r~~~~ 106 (199)
T PF02431_consen 58 DLEKSEDFFDDLLDSPVEKAIRIVPVRNVDGKHLRDAFIESIRPRLKAA 106 (199)
T ss_dssp HHHT-HHHHHHHHHSSS-EEEEEEESSSEEHHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHhcCCccEEEEEEEEecCCHHHHHHHHHHHHHHHHhhc
Confidence 555667899999776 577999999999999999999999998877665
No 36
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=22.21 E-value=2e+02 Score=20.52 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=25.6
Q ss_pred EEEEEcccCChHHHHHHHHHHHHHHHHHhhhcCC
Q 023756 228 LHIRQLAGKNSHHIIEATFKAFARALRQATEYDP 261 (277)
Q Consensus 228 LHI~~l~G~N~HHiiEA~FKAfgrALr~A~~~~~ 261 (277)
+||.+..|. +...-+++.|++..++.+.+...+
T Consensus 4 v~i~l~~gr-t~eqk~~l~~~it~~l~~~lg~p~ 36 (64)
T PRK01964 4 VQIQLLEGR-PEEKIKNLIREVTEAISATLDVPK 36 (64)
T ss_pred EEEEEeCCC-CHHHHHHHHHHHHHHHHHHhCcCh
Confidence 677767787 456778899999999999876543
No 37
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.03 E-value=99 Score=26.83 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=24.6
Q ss_pred CCceeeeecCCccHHHHHHHHHhhcCcceEEE
Q 023756 102 GSGVADSSTCIPFLDHMLDQLASHGLFDVHVR 133 (277)
Q Consensus 102 G~G~~~I~TGIgFLDHML~~la~HsgfdL~v~ 133 (277)
+.|+ -++-|||||-..-..|++|| ||+...
T Consensus 13 ~~gk-VvEVGiG~~~~VA~~L~e~g-~dv~at 42 (129)
T COG1255 13 ARGK-VVEVGIGFFLDVAKRLAERG-FDVLAT 42 (129)
T ss_pred cCCc-EEEEccchHHHHHHHHHHcC-CcEEEE
Confidence 4454 37999999999999999999 887654
Done!