Query 023756
Match_columns 277
No_of_seqs 113 out of 1027
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 12:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f1d_A IGPD 1, imidazoleglycer 100.0 4.4E-96 2E-100 651.4 20.1 202 76-277 6-207 (207)
2 1rhy_A IGPD, imidazole glycero 100.0 3.6E-94 1.2E-98 637.5 20.5 195 79-275 2-201 (202)
3 2ae8_A IGPD, imidazoleglycerol 100.0 5.2E-93 1.8E-97 636.0 17.1 195 78-275 27-221 (221)
4 2ae8_A IGPD, imidazoleglycerol 97.2 0.0012 4.2E-08 59.4 9.1 80 80-162 116-206 (221)
5 1rhy_A IGPD, imidazole glycero 97.0 0.0024 8.1E-08 56.9 8.9 81 80-163 96-187 (202)
6 2f1d_A IGPD 1, imidazoleglycer 97.0 0.0029 9.8E-08 56.5 9.3 80 168-258 10-92 (207)
7 2ja9_A Exosome complex exonucl 47.6 9.4 0.00032 32.5 2.4 41 117-159 112-152 (175)
8 1rlz_A DHS, deoxyhypusine synt 45.2 9.1 0.00031 36.7 2.1 72 86-177 91-173 (369)
9 3bbn_I Ribosomal protein S9; s 42.4 6.5 0.00022 34.8 0.6 51 83-137 74-137 (197)
10 2z0s_A Probable exosome comple 32.6 25 0.00085 30.8 2.8 42 117-160 168-209 (235)
11 2ght_A Carboxy-terminal domain 22.3 2.2E+02 0.0076 23.1 6.6 75 172-251 17-93 (181)
12 2qg8_A Acyl carrier protein sy 22.0 2E+02 0.0068 23.7 6.3 40 154-197 72-111 (163)
13 2ba0_A Archeal exosome RNA bin 20.2 44 0.0015 29.2 2.0 74 82-160 110-196 (229)
No 1
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=4.4e-96 Score=651.43 Aligned_cols=202 Identities=90% Similarity=1.292 Sum_probs=182.0
Q ss_pred CCCCcceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHH
Q 023756 76 AVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT 155 (277)
Q Consensus 76 ~~~~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~ 155 (277)
+....|+++++|+|+||+|+|+|||||+|+++|+||||||||||+||++||+|||+|+|+||++||+|||||||||+|||
T Consensus 6 ~~~~~R~a~v~R~T~ET~I~v~l~LDG~G~~~i~TGigFlDHML~~~a~Hg~~dL~v~a~GDl~iD~HHtvEDvgI~LG~ 85 (207)
T 2f1d_A 6 SMALGRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNEDIALAIGT 85 (207)
T ss_dssp ----CCEEEEEEECSSCEEEEEEETTCCCCEEEECSCHHHHHHHHHHHHHHTCEEEEEEECCTTTCSHHHHHHHHHHHHH
T ss_pred cccccceEEEEEcCCcEEEEEEEEeCCCCceeeeCCChHHHHHHHHHHHHcCCceEEEEecCccccCCCchhhhhhhHHH
Confidence 33556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEccc
Q 023756 156 ALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAG 235 (277)
Q Consensus 156 Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G 235 (277)
||+||||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||+|||++++|||||++++|
T Consensus 86 Al~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G 165 (207)
T 2f1d_A 86 ALLKALGERKGINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAG 165 (207)
T ss_dssp HHHHHHTTCCSBCCBCCEEEEETTEEEEEEEECCSSCEEEEECCCSSSEETTEETTHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred HHHHHhcCccccceeEeeeecccceeeEEEEEcCCCCeEEEecccCccccCCCchhhHHHHHHHHHhcCCCEEEEEeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccccC
Q 023756 236 KNSHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVLLRS 277 (277)
Q Consensus 236 ~N~HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL~~~ 277 (277)
+|+||++||+|||||||||+|++++|+..|.+|||||+|.++
T Consensus 166 ~N~HH~~Ea~FKA~arALr~A~~~d~r~~g~vpSTKG~Ls~~ 207 (207)
T 2f1d_A 166 ENSHHIIEATFKAFARALRQATETDPRRGGTIPSSKGVLSRS 207 (207)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSBCCC---------------
T ss_pred CCcHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCccccCC
Confidence 999999999999999999999999998777799999999763
No 2
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=3.6e-94 Score=637.46 Aligned_cols=195 Identities=46% Similarity=0.726 Sum_probs=172.9
Q ss_pred CcceEEEEeeeCCeEEEEEEEeCCCc-----eeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhH
Q 023756 79 SGRIGEVKRVTKETNVSVKINVDGSG-----VADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAI 153 (277)
Q Consensus 79 ~~R~a~i~R~TkET~I~v~LnLDG~G-----~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~L 153 (277)
+.|+++++|+|+||+|+|+|||||+| +++|+||||||||||+|||+||+|||+|+|+||++||+|||+|||||+|
T Consensus 2 ~~R~a~v~R~T~ET~I~v~l~LDG~g~~~~~~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHtvED~gI~L 81 (202)
T 1rhy_A 2 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQCKGDLHIDDHHTAEDCALAL 81 (202)
T ss_dssp CCCEEEEEEECSSCEEEEEEESCCCTTTCCCCEEEECSCHHHHHHHHHHHHHTTCEEEEEEESCC------CCHHHHHHH
T ss_pred CceeEEEEecCCceEEEEEEEeCCCCCcccceeeeeCCCcHHHHHHHHHHHHcCCceEEEEecCCccccCccHHHhhhhH
Confidence 35999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEc
Q 023756 154 GTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL 233 (277)
Q Consensus 154 G~Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l 233 (277)
||||+||||||+||+|||++++||||||++|+||||||||++|+++|++++||+|++||++|||+|||++++|||||+++
T Consensus 82 G~Al~~ALGdk~GI~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l 161 (202)
T 1rhy_A 82 GEAFKKALGERKGIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSI 161 (202)
T ss_dssp HHHHHHHHTTCTTCCCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HHHHHHHhcCccccceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccc
Q 023756 234 AGKNSHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVLL 275 (277)
Q Consensus 234 ~G~N~HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL~ 275 (277)
+|+|+||++||+|||||||||+|+++ +..|.+|||||+|.
T Consensus 162 ~G~N~HH~~Ea~FKA~arALr~A~~~--r~~g~vpSTKG~L~ 201 (202)
T 1rhy_A 162 RGENNHHIAESAFKALALAIRMAISR--TGGDDVPSTKGVLA 201 (202)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred ecCCcHHHHHHHHHHHHHHHHHHHhh--ccCCCCCCCCcccc
Confidence 99999999999999999999999997 44556899999984
No 3
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=100.00 E-value=5.2e-93 Score=635.99 Aligned_cols=195 Identities=41% Similarity=0.695 Sum_probs=170.3
Q ss_pred CCcceEEEEeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHH
Q 023756 78 DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTAL 157 (277)
Q Consensus 78 ~~~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al 157 (277)
+..|+++++|+|+||+|+|+|||| +|+++|+||||||||||+|||+||+|||+|+|+||++||+|||+|||||+|||||
T Consensus 27 ~~~R~a~v~R~T~ET~I~v~l~LD-~G~~~i~TGigFlDHML~~la~Hg~~dL~v~a~GDl~iD~HHTvEDvgI~LGqAl 105 (221)
T 2ae8_A 27 SNAMIYQKQRNTAETQLNISISDD-QSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLL 105 (221)
T ss_dssp ---CEEEEEC----CEEEEEEESS-CCCCEEECSCHHHHHHHHHHHHHHCCEEEEEEECC----HHHHHHHHHHHHHHHH
T ss_pred CcceeEEEEEeCCcEEEEEEEEeC-CCcceecCCCcHHHHHHHHHHHHcCCceEEEEeeCCcccCCccHHHHHhHHHHHH
Confidence 456999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccCC
Q 023756 158 LQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKN 237 (277)
Q Consensus 158 ~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N 237 (277)
+||||||+||+|||++++||||||++|+|||||||||+|+++|++++||+|++||++|||+|||++++|||||++++|+|
T Consensus 106 ~~ALGdk~GI~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~N 185 (221)
T 2ae8_A 106 LEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGN 185 (221)
T ss_dssp HHHHHHCCSBCCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECSC
T ss_pred HHHhcCcccCceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccccc
Q 023756 238 SHHIIEATFKAFARALRQATEYDPRRRGTIPSSKGVLL 275 (277)
Q Consensus 238 ~HHiiEA~FKAfgrALr~A~~~~~~~~g~vpSTKGvL~ 275 (277)
+||++||+|||||||||+|++++|+.. +|||||+|+
T Consensus 186 ~HH~~EA~FKA~arALr~A~~~d~r~~--vpSTKG~Ls 221 (221)
T 2ae8_A 186 THHEIEAIFKAFSRALGIALTATDDQR--VPSSKGVIE 221 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCBC---------------
T ss_pred cHHHHHHHHHHHHHHHHHhhCcCCCCC--CCCCCccCC
Confidence 999999999999999999999998743 999999984
No 4
>2ae8_A IGPD, imidazoleglycerol-phosphate dehydratase; beta-alpha-beta sandwich, duplication of A half-domain; 2.01A {Staphylococcus aureus subsp} SCOP: d.14.1.9 d.14.1.9
Probab=97.22 E-value=0.0012 Score=59.38 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=69.2
Q ss_pred cceEEEEeeeCCeEEEEEEEeCCCceeeeecCC-----c-----cHHHHHHHHHhhcCcceEEEE-ecCccccCCcccch
Q 023756 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCI-----P-----FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (277)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGI-----g-----FLDHML~~la~HsgfdL~v~a-~GDl~VD~HHtvED 148 (277)
.|.+...--=-|+-+.+.||+.|+.-...+-+. | -+.|.+.+|+.++++.|.|++ .|+ ++||.+|-
T Consensus 116 ~RyG~a~vPMDEaLa~v~vDlSGRpylv~~~~~~~~~iG~~~telv~hFf~s~a~~a~~tLHi~~l~G~---N~HH~~EA 192 (221)
T 2ae8_A 116 VRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG---NTHHEIEA 192 (221)
T ss_dssp CCEEEEEEEETTEEEEEEEECCSCCEEEEECCCSCSEETTEETTHHHHHHHHHHHHTTCEEEEEEEECS---CHHHHHHH
T ss_pred ceeecceecccceeEEEEEEcCCCceEEEecccCCcccCCCChHHHHHHHHHHHhcCCceEEEEeeecC---CcHHHHHH
Confidence 388887778899999999999998765555433 2 588999999999999999999 786 46999999
Q ss_pred hhhhHHHHHHHhcC
Q 023756 149 VGLAIGTALLQALG 162 (277)
Q Consensus 149 vgI~LG~Al~~ALg 162 (277)
+-=++|+||++|+.
T Consensus 193 ~FKA~arALr~A~~ 206 (221)
T 2ae8_A 193 IFKAFSRALGIALT 206 (221)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999999985
No 5
>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B CROS motif, gene duplication; 2.30A {Filobasidiella neoformans} SCOP: d.14.1.9 d.14.1.9
Probab=97.03 E-value=0.0024 Score=56.87 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=69.4
Q ss_pred cceEEEEeeeCCeEEEEEEEeCCCceeeeecCCc----------cHHHHHHHHHhhcCcceEEEE-ecCccccCCcccch
Q 023756 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRA-TGDIHIDDHHTNED 148 (277)
Q Consensus 80 ~R~a~i~R~TkET~I~v~LnLDG~G~~~I~TGIg----------FLDHML~~la~HsgfdL~v~a-~GDl~VD~HHtvED 148 (277)
.|.+...--=-|+-+.+.||+.|+.-...+-+.+ -+.|.+.+|+.++++.|.|++ .|+ ++||.+|-
T Consensus 96 ~RyG~a~vPMDEaL~~v~vDlSgRpylv~~~~~~~~~iG~~~tel~~~Ff~s~a~~a~~tLHi~~l~G~---N~HH~~Ea 172 (202)
T 1rhy_A 96 KRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAGVTLHIDSIRGE---NNHHIAES 172 (202)
T ss_dssp CCEEEEEEEETTEEEEEEEECSSCCEEEEECCCCSSEETTEETHHHHHHHHHHHHHHTCEEEEEEEECS---SHHHHHHH
T ss_pred ceeecccccccceeeEEEEEcCCCceEEEccCCCCcccCCCChHHHHHHHHHHHhhCCCeEEEEEEecC---CcHHHHHH
Confidence 3888877788999999999999987655554432 588999999999999999996 786 46999999
Q ss_pred hhhhHHHHHHHhcCC
Q 023756 149 VGLAIGTALLQALGD 163 (277)
Q Consensus 149 vgI~LG~Al~~ALgd 163 (277)
+-=++|+||++|...
T Consensus 173 ~FKA~arALr~A~~~ 187 (202)
T 1rhy_A 173 AFKALALAIRMAISR 187 (202)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999863
No 6
>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} SCOP: d.14.1.9 d.14.1.9
Probab=97.01 E-value=0.0029 Score=56.53 Aligned_cols=80 Identities=23% Similarity=0.385 Sum_probs=64.4
Q ss_pred ceecceecccccceeEEEEEcCCCCeeEEeecCCCccccCccCccHHHHHHHHHHhcCceEEEEEcccC---ChHHHHHH
Q 023756 168 NRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGK---NSHHIIEA 244 (277)
Q Consensus 168 ~RyG~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~---N~HHiiEA 244 (277)
.|.+...--=-|+-+.+.|||-|.+-...+.+ || -+.|.+.+|+.++++.|.|.+ .|+ ++||-+|=
T Consensus 10 ~R~a~v~R~T~ET~I~v~l~LDG~G~~~i~TG-----ig-----FlDHML~~~a~Hg~~dL~v~a-~GDl~iD~HHtvED 78 (207)
T 2f1d_A 10 GRIGEVKRVTKETNVSVKINLDGTGVADSSSG-----IP-----FLDHMLDQLASHGLFDVHVRA-TGDVHIDDHHTNED 78 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTCCCCEEEECS-----CH-----HHHHHHHHHHHHHTCEEEEEE-ECCTTTCSHHHHHH
T ss_pred cceEEEEEcCCcEEEEEEEEeCCCCceeeeCC-----Ch-----HHHHHHHHHHHHcCCceEEEE-ecCccccCCCchhh
Confidence 34444444456999999999988876555532 22 478999999999999999974 777 78999999
Q ss_pred HHHHHHHHHHHhhh
Q 023756 245 TFKAFARALRQATE 258 (277)
Q Consensus 245 ~FKAfgrALr~A~~ 258 (277)
+--+||.||++|+.
T Consensus 79 vgI~LG~Al~~ALG 92 (207)
T 2f1d_A 79 IALAIGTALLKALG 92 (207)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHhc
Confidence 99999999999984
No 7
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=47.63 E-value=9.4 Score=32.51 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=35.5
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHH
Q 023756 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQ 159 (277)
Q Consensus 117 HML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~ 159 (277)
|||+.|.++.+|++.|-..|=+||+.... +.-+++++||..
T Consensus 112 ~~l~~l~~~~~~ei~vG~NG~IWi~~~~~--~~~~~v~~aI~~ 152 (175)
T 2ja9_A 112 PLLKVLAAHTKFEVAIGLNGKIWVKCEEL--SNTLACYRTIME 152 (175)
T ss_dssp CHHHHHHTTCCCEEEEETTTEEEEECSSH--HHHHHHHHHHHH
T ss_pred chHHhhhccCCeEEEEECCcEEEEecCCH--HHHHHHHHHHHH
Confidence 59999999999999999999999997533 667778888887
No 8
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=45.24 E-value=9.1 Score=36.67 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=50.9
Q ss_pred EeeeCCeEEEEEEEeCCCceeeeecCCccHHHHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHH----------
Q 023756 86 KRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGT---------- 155 (277)
Q Consensus 86 ~R~TkET~I~v~LnLDG~G~~~I~TGIgFLDHML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~---------- 155 (277)
.|+.+++.|-+.+ -| .-|++|+. ..+.-|.+|+.+|+-|.--|-++ ||+.-|||.
T Consensus 91 ~~~~~~~tIFLg~--tg---nmissGlR---~iI~~Li~~~~VDvIVTTgggie-------hD~ik~lg~~y~G~f~~dd 155 (369)
T 1rlz_A 91 RRPLTSCTIFLGY--TS---NLISSGIR---ETIRYLVQHNMVDVLVTTAGGVE-------EDLIKCLAPTYLGEFSLRG 155 (369)
T ss_dssp ----CSSEEEEEE--CT---HHHHSTHH---HHHHHHHHTTCCSEEEECHHHHH-------HHHHTTTSCCEECCTTCCH
T ss_pred hcccCCCeEEEEc--cc---cccchhHH---HHHHHHHHcCCeeEEEccCCchH-------HHHHHHhccceecCCCCCh
Confidence 4444566664444 33 34799985 89999999999999998888654 566666652
Q ss_pred -HHHHhcCCccccceecceeccc
Q 023756 156 -ALLQALGDRKGINRFGDFTAPL 177 (277)
Q Consensus 156 -Al~~ALgdk~GI~RyG~a~vPM 177 (277)
.|+ ++||+|.|.-++|-
T Consensus 156 ~~Lr-----~~ginRIgn~~ip~ 173 (369)
T 1rlz_A 156 KELR-----ENGINRIGNLLVPN 173 (369)
T ss_dssp HHHH-----HTTEEEETTEEEET
T ss_pred HHHH-----HcCCCcccceeecc
Confidence 232 58999999999996
No 9
>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=42.36 E-value=6.5 Score=34.82 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=30.9
Q ss_pred EEEEeeeCCeEEEEEEEeCCCceeeeecCCccHH-------H---HH---HHHHhhcCcceEEEEecC
Q 023756 83 GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLD-------H---ML---DQLASHGLFDVHVRATGD 137 (277)
Q Consensus 83 a~i~R~TkET~I~v~LnLDG~G~~~I~TGIgFLD-------H---ML---~~la~HsgfdL~v~a~GD 137 (277)
+.-+|||.=..|.+. .|+|.+.|| |.++-+ + ++ ...-..+.||+.|+++|-
T Consensus 74 ~tGRRKtAvArV~l~---~G~G~I~VN-g~~l~~YF~~~~~~~~~v~~PL~l~~~~~k~DI~v~V~GG 137 (197)
T 3bbn_I 74 GTGRRKCAIARVVLQ---EGTGKFIIN-YRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVFVKAHGG 137 (197)
T ss_dssp CCCEETTEEEEEEEE---ESSCCEEET-TEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEEEEEESS
T ss_pred EEeeCCceEEEEEEE---cCceeEEEC-CCcHHHHcCccHHHHHHHHHHHHHhCccCceeEEEEEecC
Confidence 345666644444433 699998874 444222 2 22 223346899999999984
No 10
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=32.61 E-value=25 Score=30.75 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCcceEEEEecCccccCCcccchhhhhHHHHHHHh
Q 023756 117 HMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQA 160 (277)
Q Consensus 117 HML~~la~HsgfdL~v~a~GDl~VD~HHtvEDvgI~LG~Al~~A 160 (277)
+||+.|.++.+|++.|-..|-+||+.. .+..-+.+++||...
T Consensus 168 ~~l~~l~~~~~~~i~vG~NG~IWi~~~--~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 168 SMLKTLEEKTECKIFVARNGRIHLECP--NEDLEAIAVMAIKII 209 (235)
T ss_dssp HHHHHHHHHHCCEEEEETTTEEEEECS--CHHHHHHHHHHHHHH
T ss_pred hHHHHhcccCCeEEEEeCCCEEEEecC--CHHHHHHHHHHHHHH
Confidence 799999999999999999999999974 344567788898865
No 11
>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A
Probab=22.26 E-value=2.2e+02 Score=23.07 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=40.5
Q ss_pred ceecccccceeEEEEEcCCCCeeEEeecCCCcc--ccCccCccHHHHHHHHHHhcCceEEEEEcccCChHHHHHHHHHHH
Q 023756 172 DFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQR--VGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAF 249 (277)
Q Consensus 172 ~a~vPMDEALa~vaVDlsGRpylv~~~~f~~e~--IG~~~tElv~eFf~sla~~a~iTLHI~~l~G~N~HHiiEA~FKAf 249 (277)
.-++=|||+|+.+..+-...+-+.+...+.... ..-.--.-+.+|++.++.. +.++|. -.+. ..-+|.+.+.+
T Consensus 17 ~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~--~~i~I~-T~~~--~~~a~~vl~~l 91 (181)
T 2ght_A 17 CVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL--FECVLF-TASL--AKYADPVADLL 91 (181)
T ss_dssp EEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH--SEEEEE-CSSC--HHHHHHHHHHH
T ss_pred EEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC--CCEEEE-cCCC--HHHHHHHHHHH
Confidence 456779999988753211111112222221110 0112234589999999986 777763 3333 34577777776
Q ss_pred HH
Q 023756 250 AR 251 (277)
Q Consensus 250 gr 251 (277)
+.
T Consensus 92 d~ 93 (181)
T 2ght_A 92 DK 93 (181)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 12
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii}
Probab=21.98 E-value=2e+02 Score=23.71 Aligned_cols=40 Identities=23% Similarity=0.571 Sum_probs=23.3
Q ss_pred HHHHHHhcCCccccceecceecccccceeEEEEEcCCCCeeEEe
Q 023756 154 GTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYD 197 (277)
Q Consensus 154 G~Al~~ALgdk~GI~RyG~a~vPMDEALa~vaVDlsGRpylv~~ 197 (277)
=+|+.||||. |+...+..-+++.| +.+.-|=.|||++.+.
T Consensus 72 KEA~~KAlGt--Gi~~~~~~~~~~~d--IeI~~d~~G~P~v~l~ 111 (163)
T 2qg8_A 72 KEAILKSMGR--GLSSISKYGLSMND--IEIKNDKYGKPHVYLY 111 (163)
T ss_dssp HHHHHHHTTC--CBC-----CBCGGG--EEEEECTTSCEEEEEC
T ss_pred HHHHHHHhcC--CCcccccCCccccE--EEEEECCCCCEEEEEC
Confidence 4678888874 55431112245555 4456677899998654
No 13
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=20.17 E-value=44 Score=29.18 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred eEEEEeeeCCeEEEEEEEeCCCceeeeecC---------CccH----HHHHHHHHhhcCcceEEEEecCccccCCcccch
Q 023756 82 IGEVKRVTKETNVSVKINVDGSGVADSSTC---------IPFL----DHMLDQLASHGLFDVHVRATGDIHIDDHHTNED 148 (277)
Q Consensus 82 ~a~i~R~TkET~I~v~LnLDG~G~~~I~TG---------IgFL----DHML~~la~HsgfdL~v~a~GDl~VD~HHtvED 148 (277)
.++|..-..+-++.+++.=.+-|. +..| ++-+ ..||+.|.++.+|++.|-..|-+||+.. +.
T Consensus 110 ~arVi~v~~~~~i~LS~r~~~lG~--L~~G~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~IWi~~~---~~ 184 (229)
T 2ba0_A 110 IAKVLNIDPKMKVTLTMKDRICRP--IRFGRIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNGLIWVNGD---RR 184 (229)
T ss_dssp EEEEEEECTTCCEEEECCSSSCEE--ESSSEEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTSEEEEESC---HH
T ss_pred EEEEEEECCCCcEEEEEccccCCc--ccCCEEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECCcEEEEeCC---ch
Confidence 566666665556666653222232 2222 1111 3599999999999999999999999953 22
Q ss_pred hhhhHHHHHHHh
Q 023756 149 VGLAIGTALLQA 160 (277)
Q Consensus 149 vgI~LG~Al~~A 160 (277)
.-+.+++|+...
T Consensus 185 ~~~~~~~ai~~~ 196 (229)
T 2ba0_A 185 KVSIAEEAIYLI 196 (229)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 567788888754
Done!