RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 023756
         (277 letters)



>gnl|CDD|215430 PLN02800, PLN02800, imidazoleglycerol-phosphate dehydratase.
          Length = 261

 Score =  378 bits (971), Expect = e-133
 Identities = 181/263 (68%), Positives = 203/263 (77%), Gaps = 6/263 (2%)

Query: 15  SSTSSRRLLVKPKTNLSRKLLPISTQYCSSTRRMNSLTTPRASLNPDGDSKHNNGSASTS 74
           S++SS   L++PK +    LLP      SS            S      S     +AS+S
Sbjct: 4   SASSSAAQLLRPKLS-FIDLLPRRAAIVSSPSSSLPRFLRMESQLRQSIS----CAASSS 58

Query: 75  SAVDSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRA 134
           S+   GRIGEVKRVTKETNVSVKIN+DG+GVADSST IPFLDHMLDQLASHGLFDVHV+A
Sbjct: 59  SSNALGRIGEVKRVTKETNVSVKINLDGTGVADSSTGIPFLDHMLDQLASHGLFDVHVKA 118

Query: 135 TGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHL 194
           TGD+ IDDHHTNEDV LAIGTALL+ALGDRKGINRFGDF+APLDEALI V LDLSGRP+L
Sbjct: 119 TGDLWIDDHHTNEDVALAIGTALLKALGDRKGINRFGDFSAPLDEALIEVVLDLSGRPYL 178

Query: 195 NYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQL-AGKNSHHIIEATFKAFARAL 253
            Y+L+IPT+RVG  DT++VEHFFQSLVN SGMT+HIRQL AGKNSHHIIEAT KAF RAL
Sbjct: 179 GYNLEIPTERVGDLDTEMVEHFFQSLVNNSGMTVHIRQLAAGKNSHHIIEATAKAFGRAL 238

Query: 254 RQATEYDPRRRGTIPSSKGVLLR 276
           RQ  E DPRR GT+ SSKG L  
Sbjct: 239 RQCAEVDPRRAGTVASSKGTLSV 261


>gnl|CDD|234873 PRK00951, hisB, imidazoleglycerol-phosphate dehydratase; Validated.
          Length = 195

 Score =  355 bits (913), Expect = e-125
 Identities = 116/194 (59%), Positives = 153/194 (78%), Gaps = 1/194 (0%)

Query: 81  RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
           R  EV+R TKET++SV++N+DG+G +D  T + FLDHMLDQ A HGLFD+ V+A GD+HI
Sbjct: 3   RTAEVERKTKETDISVELNLDGTGKSDIDTGVGFLDHMLDQFARHGLFDLTVKAKGDLHI 62

Query: 141 DDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQI 200
           DDHHT EDVG+ +G AL +ALGD+KGI R+G    P+DEAL  V++DLSGRP+L +D++ 
Sbjct: 63  DDHHTVEDVGIVLGQALKEALGDKKGIRRYGHAYVPMDEALARVAVDLSGRPYLVFDVEF 122

Query: 201 PTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYD 260
             +++GT+DT+LV  FF++  N +G+TLHIR L G+N+HHIIEA FKAFARALR A E D
Sbjct: 123 TREKIGTFDTELVREFFEAFANNAGITLHIRVLYGRNAHHIIEALFKAFARALRMAVEID 182

Query: 261 PRRRGTIPSSKGVL 274
           PR  G +PS+KGVL
Sbjct: 183 PRVAG-VPSTKGVL 195


>gnl|CDD|153419 cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase.
           Imidazoleglycerol-phosphate dehydratase (IGPD; EC
           4.2.1.19) catalyzes the dehydration of imidazole
           glycerol phosphate to imidazole acetol phosphate, the
           sixth step of histidine biosynthesis in plants and
           microorganisms where the histidine is synthesized de
           novo. There is an internal repeat in the protein domain
           that is related by pseudo-dyad symmetry, perhaps as a
           result of an ancient gene duplication. The apo-form of
           IGPD exists as a catalytically inactive trimer which, in
           the presence of specific divalent metal cations such as
           manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel
           (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a
           biologically active high molecular weight metalloenzyme;
           a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active
           sites, and contains around 1.5 metal ions per monomer,
           each monomer contributing residues to three separate
           active sites. IGPD enzymes are monofunctional in fungi,
           plants, archaea and some eubacteria while they are
           encoded as bifunctional enzymes in other eubacteria,
           such that the enzyme is fused to histidinol-phosphate
           phosphatase, the penultimate enzyme of the histidine
           biosynthesis pathway. The histidine biosynthesis pathway
           is a potential target for development of herbicides, and
           IGPD is a target for the triazole phosphonate
           herbicides.
          Length = 190

 Score =  342 bits (880), Expect = e-120
 Identities = 108/192 (56%), Positives = 143/192 (74%), Gaps = 2/192 (1%)

Query: 83  GEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHIDD 142
            E++R TKET++ V++N+DG+G +   T I F DHML   A HG FD+ V+A GD+ +DD
Sbjct: 1   AEIERKTKETDIEVELNLDGTGKSKIDTGIGFFDHMLTLFARHGGFDLTVKAKGDLEVDD 60

Query: 143 HHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPT 202
           HHT EDVG+ +G AL +ALGD+KGI R+G    P+DEAL  V++DLSGRP+L +D + P 
Sbjct: 61  HHTVEDVGIVLGQALKKALGDKKGIRRYGSALVPMDEALARVAVDLSGRPYLVFDAEFPR 120

Query: 203 QRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPR 262
           +++G +DT+LVE FF+S  N +G+TLHIR L G+N HHIIEA FKAFARALRQA   D  
Sbjct: 121 EKIGDFDTELVEEFFRSFANNAGITLHIRVLYGRNDHHIIEAIFKAFARALRQAVAIDG- 179

Query: 263 RRGTIPSSKGVL 274
            RG +PS+KGVL
Sbjct: 180 -RGGVPSTKGVL 190


>gnl|CDD|223209 COG0131, HisB, Imidazoleglycerol-phosphate dehydratase [Amino acid
           transport and metabolism].
          Length = 195

 Score =  319 bits (821), Expect = e-111
 Identities = 113/194 (58%), Positives = 146/194 (75%), Gaps = 2/194 (1%)

Query: 81  RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
           R  EV R TKET++ V +++DG+G +   T + F DHMLDQLA HG FD+ V A GD+HI
Sbjct: 4   RTAEVTRKTKETDIEVSLDLDGTGKSKIDTGVGFFDHMLDQLARHGGFDLEVSAKGDLHI 63

Query: 141 DDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQI 200
           DDHHT ED G+A+G AL +ALGD++GI RFG    P+DEAL  V++DLSGRP+L ++ + 
Sbjct: 64  DDHHTVEDTGIALGQALKEALGDKRGIRRFGSAYVPMDEALARVAVDLSGRPYLVFNAEF 123

Query: 201 PTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATEYD 260
             ++VG +DT+LVEHFF+SL N +G+TLH+  L GKN HHIIEA FKAFARALRQA E D
Sbjct: 124 TREKVGDFDTELVEHFFRSLANNAGITLHLSVLYGKNDHHIIEALFKAFARALRQAVEID 183

Query: 261 PRRRGTIPSSKGVL 274
            R+   +PS+KGVL
Sbjct: 184 GRQA--VPSTKGVL 195


>gnl|CDD|235471 PRK05446, PRK05446, imidazole glycerol-phosphate
           dehydratase/histidinol phosphatase; Provisional.
          Length = 354

 Score =  280 bits (720), Expect = 5e-94
 Identities = 102/198 (51%), Positives = 134/198 (67%), Gaps = 7/198 (3%)

Query: 78  DSGRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
              R   V R TKET++ V++ +D  G +  +T I F DHMLDQ+A+HG F + ++  GD
Sbjct: 163 KRDRYAHVVRNTKETDIDVEVWLDREGKSKINTGIGFFDHMLDQIATHGGFRLEIKVKGD 222

Query: 138 IHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYD 197
           +HIDDHHT ED  LA+G AL QALGD++GI RFG F  P+DE L   +LD+SGRP+L + 
Sbjct: 223 LHIDDHHTVEDTALALGEALKQALGDKRGIGRFG-FVLPMDECLARCALDISGRPYLVFK 281

Query: 198 LQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQAT 257
            +   +RVG   T++VEHFF+SL +  G TLH++   GKN HH +E+ FKAF RALRQA 
Sbjct: 282 AEFKRERVGDMSTEMVEHFFRSLSDAMGCTLHLK-TKGKNDHHKVESLFKAFGRALRQAI 340

Query: 258 EYDPRRRG-TIPSSKGVL 274
               R  G T+PSSKGVL
Sbjct: 341 ----RVEGNTLPSSKGVL 354


>gnl|CDD|189563 pfam00475, IGPD, Imidazoleglycerol-phosphate dehydratase. 
          Length = 145

 Score =  267 bits (685), Expect = 1e-91
 Identities = 88/145 (60%), Positives = 111/145 (76%)

Query: 110 TCIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINR 169
           T I F DHML+Q A HG FD+ V+A GD+ IDDHHT EDVG+ +G AL QALGD+KGI R
Sbjct: 1   TGIGFFDHMLEQFAKHGGFDLTVKAKGDLEIDDHHTVEDVGIVLGQALKQALGDKKGIRR 60

Query: 170 FGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLH 229
           FG  T P+DEAL  V++DLSGRP+L +D + P +++G +DT+LVEHFF+S    +G+TLH
Sbjct: 61  FGSATVPMDEALAEVAVDLSGRPYLVFDAEFPREKIGDFDTELVEHFFRSFAFNAGITLH 120

Query: 230 IRQLAGKNSHHIIEATFKAFARALR 254
           +R L G+N HHIIEA FKA  RALR
Sbjct: 121 VRVLYGRNDHHIIEAAFKALGRALR 145


>gnl|CDD|184171 PRK13598, hisB, imidazoleglycerol-phosphate dehydratase;
           Provisional.
          Length = 193

 Score =  168 bits (427), Expect = 4e-52
 Identities = 86/195 (44%), Positives = 116/195 (59%), Gaps = 5/195 (2%)

Query: 81  RIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHI 140
           R   + R TKET + V +++D  G    ST +PF +HML  L ++      V AT  +  
Sbjct: 3   RNANITRETKETKIEVFLDIDRKGEIKVSTPVPFFNHMLITLLTYMNSTATVSATDKLPY 62

Query: 141 DDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQI 200
           DDHH  EDV + +G A+ +ALGD++GI RF     P+DEAL+ VSLD+SGR     +L +
Sbjct: 63  DDHHIVEDVAITLGLAIKEALGDKRGIKRFSHQIIPMDEALVLVSLDISGRGMAFVNLNL 122

Query: 201 PTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQATE-Y 259
               +G   T+ + HFFQS    SG+TLHI QL+G N+HHIIEA+FK    AL +AT   
Sbjct: 123 KRSEIGGLATENIPHFFQSFAYNSGVTLHISQLSGYNTHHIIEASFKGLGLALYEATRIV 182

Query: 260 DPRRRGTIPSSKGVL 274
           D   R    S+KGVL
Sbjct: 183 DNEIR----STKGVL 193


>gnl|CDD|222815 PHA00742, PHA00742, hypothetical protein.
          Length = 211

 Score = 32.1 bits (73), Expect = 0.22
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 191 RPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHH 240
           +  L++D+ I    VGT    +   ++  L +   +TL+++    K+S++
Sbjct: 43  KGLLDFDVYIRPTGVGTLTNVINPEYYHGLQDKYDLTLYVK---AKDSYY 89


>gnl|CDD|178201 PLN02591, PLN02591, tryptophan synthase.
          Length = 250

 Score = 28.9 bits (65), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 150 GLAIGTALLQALGDRK----GINRFGDFTAPLDEAL 181
           G+ +G+A+++ALG+ K    G+ R       L  AL
Sbjct: 214 GVIVGSAMVKALGEAKSPEEGLKRLEKLAKSLKAAL 249


>gnl|CDD|133065 cd06915, NTP_transferase_WcbM_like, WcbM_like is a subfamily of
           nucleotidyl transferases.  WcbM protein of Burkholderia
           mallei is involved in the biosynthesis, export or
           translocation of capsule. It is a subfamily of
           nucleotidyl transferases that transfer nucleotides onto
           phosphosugars.
          Length = 223

 Score = 29.1 bits (66), Expect = 2.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 113 PFLDHMLDQLASHGLFDV 130
           PFL+++L+ LA  G+  +
Sbjct: 30  PFLEYLLEYLARQGISRI 47


>gnl|CDD|234485 TIGR04154, archaeo_STT3, oligosaccharyl transferase, archaeosortase
           A system-associated.  Members of this protein family
           occur, one to three members per genome, in the same
           species of Euryarchaeota as contain the predicted
           protein-sorting enzyme archaeosortase (TIGR04125) and
           its cognate protein-sorting signal PGF-CTERM
           (TIGR04126).
          Length = 815

 Score = 28.4 bits (64), Expect = 4.4
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 5/39 (12%)

Query: 231 RQLAGKNSHHIIEATFKAFA-----RALRQATEYDPRRR 264
           R L G   HHI E  F   A      ALR A E+ P  R
Sbjct: 143 RSLFGFVDHHIAEVLFSTLAVLAFILALRVAREHKPSLR 181


>gnl|CDD|226276 COG3753, COG3753, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 143

 Score = 27.5 bits (61), Expect = 4.7
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 8/44 (18%)

Query: 147 EDVGLAIGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSG 190
           E +  AIGT  L  L  + G++          E L  +S  L G
Sbjct: 82  EQLESAIGTDTLSQLAQKTGLDE--------QELLKQLSEQLPG 117


>gnl|CDD|236855 PRK11126, PRK11126,
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
           synthase; Provisional.
          Length = 242

 Score = 27.9 bits (63), Expect = 5.1
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 217 FQSLVNTSGMTLHIRQLAGKNSHHIIEATFKAFARALRQ 255
           FQ+L     + LH+   AG N+H        AFA +L Q
Sbjct: 202 FQALAQQLALPLHVIPNAGHNAHR---ENPAAFAASLAQ 237


>gnl|CDD|133014 cd02523, PC_cytidylyltransferase, Phosphocholine
           cytidylyltransferases catalyze the synthesis of
           CDP-choline.  This family contains proteins similar to
           prokaryotic phosphocholine (P-cho)
           cytidylyltransferases. Phosphocholine (PC)
           cytidylyltransferases catalyze the transfer of a
           cytidine monophosphate from CTP to phosphocholine to
           form CDP-choline. PC is the most abundant phospholipid
           in eukaryotic membranes and it is also important in
           prokaryotic membranes. For pathogenic prokaryotes, the
           cell surface PC facilitates the interaction with host
           surface and induces attachment and invasion. In addition
           cell wall PC serves as scaffold for a group of
           choline-binding proteins that are secreted from the
           cells. Phosphocholine (PC) cytidylyltransferase is a key
           enzyme in the prokaryotic choline metabolism pathway. It
           has been hypothesized to consist of a choline transport
           system, a choline kinase, CTP:phosphocholine
           cytidylyltransferase, and a choline phosphotransferase
           that transfers P-Cho from CDP-Cho to either lipoteichoic
           acid or lipopolysaccharide.
          Length = 229

 Score = 28.0 bits (63), Expect = 5.5
 Identities = 5/21 (23%), Positives = 11/21 (52%)

Query: 112 IPFLDHMLDQLASHGLFDVHV 132
            P L+  ++ L   G+ D+ +
Sbjct: 29  KPLLERQIETLKEAGIDDIVI 49


>gnl|CDD|238510 cd01040, globin, Globins are heme proteins, which bind and
           transport oxygen. This family summarizes a diverse set
           of homologous protein domains, including: (1) tetrameric
           vertebrate hemoglobins, which are the major protein
           component of erythrocytes and transport oxygen in the
           bloodstream, (2) microorganismal flavohemoglobins, which
           are linked to C-terminal FAD-dependend reductase
           domains, (3) homodimeric bacterial hemoglobins, such as
           from Vitreoscilla, (4) plant leghemoglobins (symbiotic
           hemoglobins, involved in nitrogen metabolism in plant
           rhizomes), (5) plant non-symbiotic hexacoordinate
           globins and hexacoordinate globins from bacteria and
           animals, such as neuroglobin, (6) invertebrate
           hemoglobins, which may occur in tandem-repeat
           arrangements, and (7) monomeric myoglobins found in
           animal muscle tissue.
          Length = 140

 Score = 27.4 bits (61), Expect = 5.6
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 114 FLDHMLDQLASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDF 173
            LD  +  L         +   G  H       E   L  G ALL+ L +  G     DF
Sbjct: 67  ALDEAIKNLDDLEALKALLAKLGRKHAKRGVDPEHFKL-FGEALLEVLAEVLG----DDF 121

Query: 174 TAPLDEA 180
           T  +  A
Sbjct: 122 TPEVKAA 128


>gnl|CDD|219505 pfam07668, MpPF1, M penetrans paralogue family 1.  This family of
           paralogous proteins identified in Mycoplasma penetrans
           includes homologues of p35.
          Length = 314

 Score = 27.6 bits (62), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)

Query: 181 LIHVSL--DLSGRPHLNYDLQIPT 202
           L+HV++    +     NYDLQIP 
Sbjct: 145 LLHVNVTATKTSSTTTNYDLQIPV 168


>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate
           phytyltransferase.  This family of phytyltransferases,
           found in plants and cyanobacteria, are involved in the
           biosythesis of phylloquinone (Vitamin K1). Phylloquinone
           is a critical component of photosystem I. The closely
           related MenA enzyme from bacteria transfers a prenyl
           group (which only differs in the saturation of the
           isoprenyl groups) in the biosynthesis of menaquinone.
           Activity towards both substrates in certain organisms
           should be considered a possibility [Biosynthesis of
           cofactors, prosthetic groups, and carriers, Menaquinone
           and ubiquinone].
          Length = 285

 Score = 27.8 bits (62), Expect = 7.0
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 153 IGTALLQALGDRKGINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQL 212
           +GTA+    G    ++RF  F       LI   ++L             T  V   DT +
Sbjct: 20  VGTAVAWGQGGVFHLDRFALFLIAA--ILILAWINL-------------TNDVFDSDTGI 64

Query: 213 VEHFFQSLVNTSGMTLHIRQLA 234
                 S+VN +G    +  LA
Sbjct: 65  DRFKLHSIVNLTGSRSLVFWLA 86


>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
           protein.
          Length = 336

 Score = 27.7 bits (62), Expect = 7.0
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 111 CIPFLDHMLDQLASHGLFDVHVRATGDIHIDDHH 144
            IP  DHM+ +   HG+FD      G ++  D H
Sbjct: 56  VIPLDDHMVHR--GHGVFDTATIRDGHLYELDAH 87


>gnl|CDD|224584 COG1670, RimL, Acetyltransferases, including N-acetylases of
           ribosomal proteins [Translation, ribosomal structure and
           biogenesis].
          Length = 187

 Score = 27.2 bits (60), Expect = 7.2
 Identities = 13/63 (20%), Positives = 21/63 (33%)

Query: 122 LASHGLFDVHVRATGDIHIDDHHTNEDVGLAIGTALLQALGDRKGINRFGDFTAPLDEAL 181
           L+          A     +D  +  +        ALL    +  G++R      P +EA 
Sbjct: 85  LSDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEAS 144

Query: 182 IHV 184
           I V
Sbjct: 145 IRV 147


>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
          Length = 497

 Score = 27.8 bits (62), Expect = 7.7
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 155 TALLQALGDRKGINRFGDF--TAPLDEALIHVSLDLSGRPHL-NYDL 198
           TAL   L +R  ++   DF      D  L+ V  DL     +  Y L
Sbjct: 336 TALPLPLLERYNMSSLPDFLKVWNPDLNLLAVYFDLFKDSTMRKYVL 382


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0742    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,774,036
Number of extensions: 1287379
Number of successful extensions: 1261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1249
Number of HSP's successfully gapped: 28
Length of query: 277
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 181
Effective length of database: 6,679,618
Effective search space: 1209010858
Effective search space used: 1209010858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)