RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023756
(277 letters)
>d2f1da2 d.14.1.9 (A:96-192) Imidazole glycerol phosphate
dehydratase {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 97
Score = 152 bits (386), Expect = 6e-48
Identities = 91/97 (93%), Positives = 95/97 (97%)
Query: 166 GINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSG 225
GINRFGDFTAPLDEALIHVSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQSLVNTSG
Sbjct: 1 GINRFGDFTAPLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSG 60
Query: 226 MTLHIRQLAGKNSHHIIEATFKAFARALRQATEYDPR 262
MTLHIRQLAG+NSHHIIEATFKAFARALRQATE DPR
Sbjct: 61 MTLHIRQLAGENSHHIIEATFKAFARALRQATETDPR 97
Score = 25.9 bits (57), Expect = 2.2
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 91 ETNVSVKINVDGSGVADSSTCIPF----------LDHMLDQLASHGLFDVHVRA-TGDIH 139
E + V +++ G + IP ++H L + +H+R G+
Sbjct: 14 EALIHVSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGE-- 71
Query: 140 IDDHHTNEDVGLAIGTALLQAL 161
+ HH E A AL QA
Sbjct: 72 -NSHHIIEATFKAFARALRQAT 92
>d1rhya2 d.14.1.9 (A:94-187) Imidazole glycerol phosphate
dehydratase {Fungus (Filobasidiella neoformans) [TaxId:
5207]}
Length = 94
Score = 139 bits (353), Expect = 6e-43
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 166 GINRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSG 225
GI R+G APLDE+L +D+S RP+ L ++VG T++V H QS +G
Sbjct: 1 GIKRYGYAYAPLDESLSRAVIDISSRPYFMCHLPFTREKVGDLSTEMVSHLLQSFAFAAG 60
Query: 226 MTLHIRQLAGKNSHHIIEATFKAFARALRQATE 258
+TLHI + G+N+HHI E+ FKA A A+R A
Sbjct: 61 VTLHIDSIRGENNHHIAESAFKALALAIRMAIS 93
Score = 27.1 bits (60), Expect = 0.74
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 117 HMLDQLASHGLFDVHVRA-TGDIHIDDHHTNEDVGLAIGTALLQAL 161
H+L A +H+ + G+ ++HH E A+ A+ A+
Sbjct: 50 HLLQSFAFAAGVTLHIDSIRGE---NNHHIAESAFKALALAIRMAI 92
>d2ae8a2 d.14.1.9 (A:85-179) Imidazole glycerol phosphate
dehydratase {Staphylococcus aureus [TaxId: 1280]}
Length = 95
Score = 133 bits (337), Expect = 1e-40
Identities = 42/92 (45%), Positives = 63/92 (68%)
Query: 167 INRFGDFTAPLDEALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGM 226
R+G P+DE L V +D+SGRP+L+++ + ++VGT+DT+LVE FF+++V + +
Sbjct: 2 FVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARL 61
Query: 227 TLHIRQLAGKNSHHIIEATFKAFARALRQATE 258
T HI + G N+HH IEA FKAF+RAL A
Sbjct: 62 TTHIDLIRGGNTHHEIEAIFKAFSRALGIALT 93
Score = 25.2 bits (55), Expect = 4.6
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 91 ETNVSVKINVDGSGVADSSTCIP----------FLDHMLDQLASHGLFDVHVRAT-GDIH 139
ET V +++ G + + ++ + + H+ G
Sbjct: 14 ETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGG-- 71
Query: 140 IDDHHTNEDVGLAIGTALLQAL 161
+ HH E + A AL AL
Sbjct: 72 -NTHHEIEAIFKAFSRALGIAL 92
>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 125 bits (316), Expect = 2e-37
Identities = 77/86 (89%), Positives = 84/86 (97%)
Query: 80 GRIGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIH 139
GRIGEVKRVTKETNVSVKIN+DG+GVADSS+ IPFLDHMLDQLASHGLFDVHVRATGD+H
Sbjct: 1 GRIGEVKRVTKETNVSVKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVH 60
Query: 140 IDDHHTNEDVGLAIGTALLQALGDRK 165
IDDHHTNED+ LAIGTALL+ALG+RK
Sbjct: 61 IDDHHTNEDIALAIGTALLKALGERK 86
Score = 33.6 bits (77), Expect = 0.003
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)
Query: 179 EALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNS 238
E + V ++L G + IP D L + L + + + +
Sbjct: 12 ETNVSVKINLDGTGVADSSSGIPF-----LDHMLDQLASHGLFD---VHVRATGDVHIDD 63
Query: 239 HHIIEATFKAFARALRQA 256
HH E A AL +A
Sbjct: 64 HHTNEDIALAIGTALLKA 81
>d2ae8a1 d.14.1.9 (A:1-84) Imidazole glycerol phosphate dehydratase
{Staphylococcus aureus [TaxId: 1280]}
Length = 84
Score = 115 bits (290), Expect = 1e-33
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I + +R T ET +++ I+ D + +T + FL+HML H +++ A GDI +D
Sbjct: 2 IYQKQRNTAETQLNISIS-DDQSPSHINTGVGFLNHMLTLFTFHSGLSLNIEAQGDIDVD 60
Query: 142 DHHTNEDVGLAIGTALLQALGDRK 165
DHH ED+G+ IG LL+ + D+K
Sbjct: 61 DHHVTEDIGIVIGQLLLEMIKDKK 84
Score = 27.0 bits (60), Expect = 0.72
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 9/78 (11%)
Query: 179 EALIHVSLDLSGRPHLNYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNS 238
E +++S+ P I T VG + L F S ++ + + + +
Sbjct: 11 ETQLNISISDDQSPS-----HINTG-VGFLNHMLTLFTFHSGLS---LNIEAQGDIDVDD 61
Query: 239 HHIIEATFKAFARALRQA 256
HH+ E + L +
Sbjct: 62 HHVTEDIGIVIGQLLLEM 79
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase
{Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Length = 92
Score = 113 bits (284), Expect = 1e-32
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 5/92 (5%)
Query: 79 SGRIGEVKRVTKETNVSVKINVD-----GSGVADSSTCIPFLDHMLDQLASHGLFDVHVR 133
S RI V+R T ET++S I++D + ST I FLDHM LA HG + ++
Sbjct: 1 SERIASVERTTSETHISCTIDLDHIPGVTEQKINVSTGIGFLDHMFTALAKHGGMSLQLQ 60
Query: 134 ATGDIHIDDHHTNEDVGLAIGTALLQALGDRK 165
GD+HIDDHHT ED LA+G A +ALG+RK
Sbjct: 61 CKGDLHIDDHHTAEDCALALGEAFKKALGERK 92
Score = 30.9 bits (70), Expect = 0.036
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 179 EALIHVSLDLSGRPHL-NYDLQIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKN 237
E I ++DL P + + + T +G D ++ + L + +
Sbjct: 13 ETHISCTIDLDHIPGVTEQKINVSTG-IGFLDHMFTALAKHGGMS---LQLQCKGDLHID 68
Query: 238 SHHIIEATFKAFARALRQA 256
HH E A A ++A
Sbjct: 69 DHHTAEDCALALGEAFKKA 87
>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
3/5-O-methyltransferase {Alfalfa (Medicago sativa)
[TaxId: 3879]}
Length = 107
Score = 25.2 bits (55), Expect = 4.6
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 106 ADSSTCIPFLDHMLDQLASHGLFDVHVRATGD 137
+ LD ML LA + + VR D
Sbjct: 56 TTNPDAPVMLDRMLRLLACYIILTCSVRTQQD 87
>d1g7sa3 c.20.1.1 (A:329-459) Initiation factor IF2/eIF5b, domain 3
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 131
Score = 24.8 bits (54), Expect = 6.8
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 82 IGEVKRVTKETNVSVKINVDGSGVADSSTCIPFLDHMLDQLASHGLFDVHVRATGDIHID 141
I ++K T E V VK + GS L+ ++ L + GD+
Sbjct: 13 IEDIKIDTDEAGVVVKADTLGS-----------LEAVVKILRDMYVPIKVA-DIGDVSRR 60
Query: 142 D 142
D
Sbjct: 61 D 61
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 25.1 bits (54), Expect = 7.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 138 IHIDDHHT-NEDVGLAIGTALLQALGDRKGINRFGD 172
+ +D+ T +++GL++ L++ +G + I RFGD
Sbjct: 94 LKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGD 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.374
Gapped
Lambda K H
0.267 0.0700 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 960,259
Number of extensions: 41752
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 17
Length of query: 277
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,254,276
Effective search space: 242075268
Effective search space used: 242075268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)