BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023757
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 60.8 bits (146), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 229 LCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 275
LC++C E+E N+ F PCGH CC C+++L +CP+CR R++ V +
Sbjct: 20 LCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 230 CVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 275
C +C+++E + VF PCGHL C C+ L CP+CR I VRTF
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF 343
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 230 CVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 275
C +C+++E + VF PCGHL C C+ L CP+CR I VRTF
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTF 72
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 209 TNGQAENGSDSTQRDRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLC 264
T+ Q E ++ R LC IC+++ VF PCGHL C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 209 TNGQAENGSDSTQRDRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLC 264
T+ Q E ++ R LC IC+++ VF PCGHL C C+ + CP+C
Sbjct: 6 TSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 45.8 bits (107), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 212 QAENGSDSTQRDRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLC 264
Q E ++ R LC IC+++ VF PCGHL C C+ + CP+C
Sbjct: 10 QKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMC 62
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 216 GSDSTQRDRVMPD-LCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRT 274
GS Q R+ + C +CL++ + VF PCGHL C C+ L CP+CR + VRT
Sbjct: 1 GSVEAQLRRLQEERTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRT 59
Query: 275 F 275
F
Sbjct: 60 F 60
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 36.2 bits (82), Expect = 0.018, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 230 CVICLEQEYNA--VFFPCGHLCCCLICSSRLTN----CPLCRRRIDQVVRTF 275
CVIC + N V GHL C C+ +L CP+CR+ I +V T+
Sbjct: 11 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 36.2 bits (82), Expect = 0.018, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 230 CVICLEQEYNA--VFFPCGHLCCCLICSSRLTN----CPLCRRRIDQVVRTF 275
CVIC + N V GHL C C+ +L CP+CR+ I +V T+
Sbjct: 10 CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%)
Query: 213 AENGSDSTQRDRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQ 270
+GS + CV+C N V PC H C C C CP+CR+ + +
Sbjct: 1 GSSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQE 58
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 35.4 bits (80), Expect = 0.033, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 35.0 bits (79), Expect = 0.043, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 229 LCVICLEQEYNAVFFPCGHLCC--CLIC--SSRLTNCPLCRRRI 268
LC IC E + + PCGHL C CL S CP CR I
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.9 bits (76), Expect = 0.090, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 230 CVICLEQEYN-AVFFPCGHLCCCLICSSRLT----NCPLCRRRIDQVVRT 274
C ICLE N ++ PC H C +C +R CPLC+ ++ VV T
Sbjct: 8 CPICLEDPSNYSMALPCLH-AFCYVCITRWIRQNPTCPLCKVPVESVVHT 56
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 33.5 bits (75), Expect = 0.12, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 230 CVICLEQ--EYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 275
C +C ++ + N + GHL C C+ RL +CP+C++ I V++ F
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 12/48 (25%)
Query: 229 LCVICLEQEYNAVFFPCGHLCCCLICSSRLTN--------CPLCRRRI 268
LC IC E + + PCGH L+C+S LT+ CP CR I
Sbjct: 26 LCKICAENDKDVKIEPCGH----LMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 29 GSWIQDSALMLSMSKE-----VPWYL-----DDGTGCVFVVGARGATGFALTVGSEVFEE 78
G +D A+++ + +P ++ DDGT +FVV + G F +G ++FE+
Sbjct: 193 GQVYEDEAVLVXVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED 252
Query: 79 SGRS 82
S +
Sbjct: 253 SNEN 256
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 29 GSWIQDSALMLSMSKE-----VPWYL-----DDGTGCVFVVGARGATGFALTVGSEVFEE 78
G +D A+++ + +P ++ DDGT +FVV + G F +G ++FE+
Sbjct: 189 GQVYEDEAVLVXVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED 248
Query: 79 SGRS 82
S +
Sbjct: 249 SNEN 252
>pdb|3DPI|A Chain A, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
pdb|3DPI|B Chain B, Crystal Structure Of Nad+ Synthetase From Burkholderia
Pseudomallei
Length = 285
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 91 LQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLE 148
L GL V+ + R+L G +V + D+ T+R QRP + + ++ + ID+ LE
Sbjct: 193 LAGLTKRRVRALARML--GADEPLVLKTPTADLETLRPQRPDEHAYGITYEQIDDFLE 248
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 204 QDNEGTNGQAENGSDSTQRDRVMPDL---------CVICLEQEYNAVFFPCGHLCCCLIC 254
++ E + E Q++ V+ + C+IC E AV C H C
Sbjct: 21 KNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCI 80
Query: 255 SS---RLTNCPLCRRRI 268
+ R CP+CR+ I
Sbjct: 81 NEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 204 QDNEGTNGQAENGSDSTQRDRVMPDL---------CVICLEQEYNAVFFPCGHLCCCLIC 254
++ E + E Q++ V+ + C+IC E AV C H C
Sbjct: 32 KNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCI 91
Query: 255 SS---RLTNCPLCRRRI 268
+ R CP+CR+ I
Sbjct: 92 NEWMKRKIECPICRKDI 108
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 230 CVICLEQEYNAVFFPCGHLCC--CLICSSRLT--NCPL 263
C ICL AV PCGH C C+I S R CP+
Sbjct: 28 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 9/66 (13%)
Query: 216 GSDSTQRDRVMPDL----CVICLEQEYNAVFFPCGHLCCCLICSSRLTN----CPLCRRR 267
GS + +D +P L C IC+E V PC H C S + CP CRRR
Sbjct: 1 GSMALPKD-AIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59
Query: 268 IDQVVR 273
+ R
Sbjct: 60 VSSWTR 65
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)
Query: 204 QDNEGTNGQAENGSDSTQRDRVMPDL---------CVICLEQEYNAVFFPCGHLCCCLIC 254
++ E + E Q++ V+ + C+IC E AV C H C
Sbjct: 21 KNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCI 80
Query: 255 SS---RLTNCPLCRRRI 268
+ R CP+CR+ I
Sbjct: 81 NEWMKRKIECPICRKDI 97
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 28.1 bits (61), Expect = 5.6, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 230 CVICLEQEYNAVFFPCGHLCC--CLICSSRLT--NCPL 263
C ICL AV PCGH C C+I S R CP+
Sbjct: 9 CPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 28.1 bits (61), Expect = 6.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 9/45 (20%)
Query: 230 CVICLEQEYNAVFFPCGHLCC--CLICSSRL-------TNCPLCR 265
C ICLE + CGH C CL + + ++CP+CR
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR 66
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 208 GTNGQAENGSDSTQRDRVMPDLCVICLEQEYNAVFFPCGHLCC--CLICSSRLTN-CPLC 264
G++G + N T +P+ C ICL+ + V PC H+ C C+ +S L C LC
Sbjct: 1 GSSGSSGN----TAPSLTVPE-CAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALC 55
Query: 265 RRRIDQ 270
R+ I +
Sbjct: 56 RQEIPE 61
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 27.3 bits (59), Expect = 9.3, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 217 SDSTQRDRVMPD--LCVICLEQEYNAVFFPCGHLCCCLIC------SSRLTNCPLCRR 266
S S+ D +PD LC+IC + +AV PC C C S CP C +
Sbjct: 3 SGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,709,744
Number of Sequences: 62578
Number of extensions: 297033
Number of successful extensions: 1012
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 989
Number of HSP's gapped (non-prelim): 46
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)