Query 023757
Match_columns 277
No_of_seqs 245 out of 1305
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:25:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1571 Predicted E3 ubiquitin 100.0 1.9E-49 4.1E-54 359.0 8.3 275 2-277 74-355 (355)
2 PF12483 GIDE: E3 Ubiquitin li 100.0 5.9E-34 1.3E-38 238.5 13.3 140 28-167 12-156 (160)
3 KOG4172 Predicted E3 ubiquitin 99.4 1.6E-14 3.4E-19 96.9 -3.3 50 228-277 8-62 (62)
4 KOG4265 Predicted E3 ubiquitin 99.3 1.2E-12 2.5E-17 119.7 1.9 52 225-276 288-343 (349)
5 KOG4275 Predicted E3 ubiquitin 99.3 1.4E-12 3E-17 115.8 1.3 51 227-277 300-350 (350)
6 PF13920 zf-C3HC4_3: Zinc fing 99.2 2.5E-12 5.4E-17 86.8 1.2 45 227-271 2-50 (50)
7 KOG0823 Predicted E3 ubiquitin 98.8 2.3E-09 5.1E-14 92.9 3.2 49 226-275 46-103 (230)
8 KOG0317 Predicted E3 ubiquitin 98.7 4.7E-09 1E-13 93.6 0.7 46 226-272 238-287 (293)
9 PLN03208 E3 ubiquitin-protein 98.6 1.3E-08 2.9E-13 86.7 2.4 49 226-275 17-87 (193)
10 KOG1100 Predicted E3 ubiquitin 98.6 7.4E-08 1.6E-12 83.8 6.1 47 229-275 160-206 (207)
11 KOG4628 Predicted E3 ubiquitin 98.5 5.3E-07 1.1E-11 83.5 8.3 43 228-271 230-280 (348)
12 PF13923 zf-C3HC4_2: Zinc fing 98.4 1.1E-07 2.3E-12 60.7 0.6 34 230-264 1-39 (39)
13 KOG0320 Predicted E3 ubiquitin 98.3 1.7E-07 3.6E-12 78.4 1.5 48 227-275 131-186 (187)
14 PHA02929 N1R/p28-like protein; 98.3 2.1E-07 4.5E-12 82.4 1.8 47 227-274 174-232 (238)
15 PF13639 zf-RING_2: Ring finge 98.2 2.7E-07 5.9E-12 60.3 0.6 36 229-265 2-44 (44)
16 PF14634 zf-RING_5: zinc-RING 98.2 4.8E-07 1E-11 59.3 1.1 36 230-266 2-44 (44)
17 KOG2164 Predicted E3 ubiquitin 98.2 3.6E-07 7.8E-12 87.4 0.7 47 227-274 186-243 (513)
18 KOG0978 E3 ubiquitin ligase in 98.1 4.3E-07 9.3E-12 90.5 -1.2 47 228-275 644-697 (698)
19 PF15227 zf-C3HC4_4: zinc fing 98.0 1.7E-06 3.7E-11 56.1 0.9 34 230-264 1-42 (42)
20 PHA02926 zinc finger-like prot 98.0 1.1E-06 2.4E-11 76.1 -0.1 46 227-273 170-234 (242)
21 COG5574 PEX10 RING-finger-cont 97.9 2.1E-06 4.4E-11 76.1 0.4 43 227-270 215-263 (271)
22 PF00097 zf-C3HC4: Zinc finger 97.9 3.5E-06 7.6E-11 54.0 0.5 34 230-264 1-41 (41)
23 smart00184 RING Ring finger. E 97.8 6.6E-06 1.4E-10 50.9 1.4 34 230-264 1-39 (39)
24 cd00162 RING RING-finger (Real 97.8 6.5E-06 1.4E-10 52.7 1.3 39 229-268 1-45 (45)
25 TIGR00599 rad18 DNA repair pro 97.8 7.3E-06 1.6E-10 77.6 0.9 44 226-270 25-72 (397)
26 COG5243 HRD1 HRD ubiquitin lig 97.8 4.6E-05 9.9E-10 70.5 5.8 42 226-268 286-344 (491)
27 KOG1785 Tyrosine kinase negati 97.7 6.5E-06 1.4E-10 76.6 0.1 49 224-273 366-420 (563)
28 smart00504 Ubox Modified RING 97.7 1.3E-05 2.9E-10 56.0 1.3 42 228-270 2-47 (63)
29 PF13445 zf-RING_UBOX: RING-ty 97.6 2.1E-05 4.5E-10 51.3 0.4 27 230-258 1-31 (43)
30 PF14447 Prok-RING_4: Prokaryo 97.5 5E-05 1.1E-09 51.6 1.3 43 227-270 7-51 (55)
31 KOG4692 Predicted E3 ubiquitin 97.5 5.3E-05 1.1E-09 69.7 1.9 44 226-270 421-468 (489)
32 COG5432 RAD18 RING-finger-cont 97.4 5.5E-05 1.2E-09 67.9 0.7 43 226-269 24-70 (391)
33 COG5540 RING-finger-containing 97.3 0.0001 2.2E-09 66.6 1.6 41 228-269 324-372 (374)
34 KOG0287 Postreplication repair 97.3 5.8E-05 1.3E-09 69.1 0.0 43 227-270 23-69 (442)
35 PF12678 zf-rbx1: RING-H2 zinc 97.2 0.00016 3.5E-09 52.5 1.4 36 229-265 21-73 (73)
36 KOG2177 Predicted E3 ubiquitin 97.1 0.0001 2.2E-09 65.6 -0.0 40 226-266 12-55 (386)
37 COG5236 Uncharacterized conser 97.1 0.00042 9.1E-09 63.7 3.3 46 226-272 60-111 (493)
38 KOG0802 E3 ubiquitin ligase [P 96.9 0.0011 2.5E-08 65.8 5.0 42 226-268 290-340 (543)
39 PF14835 zf-RING_6: zf-RING of 96.8 0.00056 1.2E-08 48.1 1.4 40 228-268 8-50 (65)
40 COG5152 Uncharacterized conser 96.5 0.00063 1.4E-08 58.1 -0.1 46 224-270 193-242 (259)
41 PF04564 U-box: U-box domain; 96.3 0.0019 4.1E-08 46.8 1.6 43 227-270 4-51 (73)
42 KOG0826 Predicted E3 ubiquitin 96.3 0.0081 1.7E-07 55.1 5.7 53 223-276 296-355 (357)
43 KOG1813 Predicted E3 ubiquitin 96.1 0.0025 5.5E-08 57.5 1.4 47 224-271 238-288 (313)
44 KOG4159 Predicted E3 ubiquitin 95.8 0.0029 6.3E-08 60.2 0.7 45 225-270 82-130 (398)
45 KOG0804 Cytoplasmic Zn-finger 95.6 0.0081 1.8E-07 57.2 2.5 41 227-268 175-221 (493)
46 KOG2879 Predicted E3 ubiquitin 95.5 0.0095 2E-07 53.4 2.6 45 225-270 237-288 (298)
47 KOG0311 Predicted E3 ubiquitin 95.5 0.0013 2.8E-08 60.8 -3.0 44 227-271 43-92 (381)
48 KOG0828 Predicted E3 ubiquitin 95.5 0.0031 6.7E-08 60.6 -0.6 43 227-270 571-635 (636)
49 KOG1039 Predicted E3 ubiquitin 95.3 0.0067 1.4E-07 56.7 0.9 46 227-273 161-225 (344)
50 PF04641 Rtf2: Rtf2 RING-finge 94.5 0.021 4.5E-07 51.5 2.1 46 224-270 110-162 (260)
51 PF12861 zf-Apc11: Anaphase-pr 94.5 0.016 3.5E-07 43.2 1.0 29 240-269 47-82 (85)
52 KOG1814 Predicted E3 ubiquitin 94.3 0.024 5.3E-07 53.5 1.9 40 227-267 184-238 (445)
53 KOG3002 Zn finger protein [Gen 94.2 0.02 4.3E-07 52.7 1.2 43 227-271 48-93 (299)
54 KOG1001 Helicase-like transcri 93.7 0.02 4.4E-07 58.2 0.2 41 228-270 455-501 (674)
55 PF10367 Vps39_2: Vacuolar sor 93.3 0.27 5.8E-06 37.5 5.9 29 227-256 78-108 (109)
56 KOG2932 E3 ubiquitin ligase in 93.1 0.027 5.8E-07 51.4 0.1 44 227-271 90-136 (389)
57 KOG1734 Predicted RING-contain 93.1 0.041 8.9E-07 49.3 1.1 46 224-270 221-282 (328)
58 KOG0825 PHD Zn-finger protein 92.6 0.025 5.3E-07 57.3 -0.9 44 228-272 124-174 (1134)
59 KOG0297 TNF receptor-associate 92.0 0.068 1.5E-06 51.1 1.3 46 226-272 20-70 (391)
60 PF05290 Baculo_IE-1: Baculovi 90.7 0.065 1.4E-06 43.1 -0.3 45 228-273 81-136 (140)
61 KOG3039 Uncharacterized conser 90.6 0.13 2.8E-06 45.7 1.4 42 228-270 222-271 (303)
62 KOG2113 Predicted RNA binding 89.7 0.29 6.2E-06 44.9 3.0 48 227-274 343-392 (394)
63 KOG1428 Inhibitor of type V ad 89.7 0.1 2.2E-06 56.3 0.1 46 225-271 3484-3546(3738)
64 KOG1002 Nucleotide excision re 88.9 0.086 1.9E-06 51.4 -1.0 41 227-268 536-585 (791)
65 smart00744 RINGv The RING-vari 86.7 0.26 5.6E-06 32.8 0.5 36 229-265 1-49 (49)
66 COG5220 TFB3 Cdk activating ki 86.1 0.14 3.1E-06 45.2 -1.2 39 227-266 10-61 (314)
67 PF04710 Pellino: Pellino; In 85.1 0.27 5.8E-06 46.5 0.0 43 227-270 328-402 (416)
68 COG5175 MOT2 Transcriptional r 83.7 0.31 6.6E-06 45.2 -0.3 43 227-270 14-65 (480)
69 KOG1571 Predicted E3 ubiquitin 83.5 1.6 3.5E-05 40.8 4.4 145 8-158 93-269 (355)
70 PF10272 Tmpp129: Putative tra 82.4 0.83 1.8E-05 43.1 2.0 17 227-243 271-287 (358)
71 COG5219 Uncharacterized conser 82.3 0.36 7.9E-06 50.3 -0.4 39 228-269 1470-1523(1525)
72 KOG3161 Predicted E3 ubiquitin 79.6 0.53 1.1E-05 47.1 -0.3 38 228-267 12-55 (861)
73 KOG2660 Locus-specific chromos 79.5 0.3 6.5E-06 45.1 -1.9 46 227-273 15-65 (331)
74 KOG3842 Adaptor protein Pellin 78.6 0.96 2.1E-05 41.6 1.1 44 226-270 340-415 (429)
75 PF02318 FYVE_2: FYVE-type zin 78.5 6.4 0.00014 31.0 5.7 40 227-267 54-103 (118)
76 PF14570 zf-RING_4: RING/Ubox 77.3 0.79 1.7E-05 30.5 0.1 38 230-268 1-47 (48)
77 PF03854 zf-P11: P-11 zinc fin 76.8 1 2.3E-05 29.8 0.5 42 229-272 4-49 (50)
78 PF11789 zf-Nse: Zinc-finger o 74.6 1.5 3.2E-05 30.2 0.9 37 226-263 10-53 (57)
79 COG5222 Uncharacterized conser 69.2 1.6 3.5E-05 39.9 0.1 39 227-266 274-318 (427)
80 KOG1940 Zn-finger protein [Gen 68.4 1.2 2.5E-05 40.6 -1.0 47 228-276 159-213 (276)
81 PF14880 COX14: Cytochrome oxi 67.8 36 0.00078 23.4 6.7 30 158-187 18-47 (59)
82 KOG4362 Transcriptional regula 67.2 1.4 3.1E-05 44.7 -0.7 42 228-270 22-70 (684)
83 KOG4445 Uncharacterized conser 67.0 1.1 2.4E-05 40.9 -1.3 42 228-270 116-187 (368)
84 KOG2113 Predicted RNA binding 66.2 2.8 6E-05 38.7 1.0 48 226-273 135-187 (394)
85 PF11793 FANCL_C: FANCL C-term 65.8 1.7 3.8E-05 31.0 -0.3 42 228-270 3-67 (70)
86 KOG3799 Rab3 effector RIM1 and 65.2 10 0.00022 30.8 3.9 39 227-268 65-117 (169)
87 PF05883 Baculo_RING: Baculovi 63.6 2.1 4.5E-05 34.7 -0.3 30 228-258 27-65 (134)
88 COG5194 APC11 Component of SCF 62.5 3.3 7.1E-05 30.5 0.6 40 229-269 33-81 (88)
89 PLN02189 cellulose synthase 61.1 4.8 0.0001 42.9 1.8 44 227-270 34-88 (1040)
90 PF10883 DUF2681: Protein of u 60.8 59 0.0013 24.4 7.1 21 165-185 11-31 (87)
91 PHA03096 p28-like protein; Pro 59.7 2.6 5.6E-05 38.6 -0.4 40 228-268 179-236 (284)
92 KOG3579 Predicted E3 ubiquitin 57.8 4.3 9.4E-05 36.9 0.7 30 227-257 268-301 (352)
93 PF08114 PMP1_2: ATPase proteo 57.2 30 0.00065 22.2 4.2 21 164-184 17-37 (43)
94 KOG1493 Anaphase-promoting com 56.3 1.5 3.2E-05 32.0 -2.0 40 229-269 33-81 (84)
95 PF06305 DUF1049: Protein of u 54.3 69 0.0015 22.0 7.4 22 177-198 41-62 (68)
96 KOG2114 Vacuolar assembly/sort 52.7 4.1 8.8E-05 42.3 -0.4 47 228-275 841-889 (933)
97 KOG3113 Uncharacterized conser 51.8 9.9 0.00021 34.1 1.9 45 225-270 109-159 (293)
98 cd00729 rubredoxin_SM Rubredox 50.1 9.8 0.00021 23.2 1.2 14 259-272 19-32 (34)
99 KOG1941 Acetylcholine receptor 49.8 19 0.00041 34.4 3.5 43 226-269 364-416 (518)
100 KOG3899 Uncharacterized conser 45.8 5.7 0.00012 36.3 -0.5 10 259-268 355-364 (381)
101 PRK13872 conjugal transfer pro 43.5 28 0.00061 30.5 3.6 37 130-166 14-50 (228)
102 KOG3842 Adaptor protein Pellin 43.3 15 0.00033 34.1 1.8 30 238-267 315-350 (429)
103 PRK13836 conjugal transfer pro 42.2 30 0.00065 30.2 3.5 38 130-167 5-42 (220)
104 PF10176 DUF2370: Protein of u 41.7 48 0.001 29.5 4.6 30 158-187 194-223 (233)
105 cd00350 rubredoxin_like Rubred 41.5 16 0.00035 21.9 1.2 14 259-272 18-31 (33)
106 smart00734 ZnF_Rad18 Rad18-lik 40.7 5.7 0.00012 22.7 -0.9 10 259-268 2-11 (26)
107 PF04423 Rad50_zn_hook: Rad50 39.5 11 0.00023 25.3 0.2 10 260-269 22-31 (54)
108 cd04488 RecG_wedge_OBF RecG_we 39.2 56 0.0012 22.1 4.0 30 102-132 42-71 (75)
109 PF07191 zinc-ribbons_6: zinc- 38.9 8.8 0.00019 27.6 -0.3 38 229-271 3-43 (70)
110 PF10217 DUF2039: Uncharacteri 38.2 4.1 8.9E-05 30.9 -2.2 36 227-267 55-90 (92)
111 PF01102 Glycophorin_A: Glycop 37.9 16 0.00035 29.1 1.0 28 146-173 57-84 (122)
112 KOG2817 Predicted E3 ubiquitin 37.7 13 0.00028 35.4 0.5 40 228-268 335-384 (394)
113 PF10886 DUF2685: Protein of u 37.5 15 0.00032 25.0 0.6 13 259-271 2-14 (54)
114 KOG2068 MOT2 transcription fac 37.2 20 0.00043 33.4 1.6 46 227-273 249-302 (327)
115 cd04478 RPA2_DBD_D RPA2_DBD_D: 37.0 1.5E+02 0.0033 21.6 6.2 26 103-129 45-70 (95)
116 PF10146 zf-C4H2: Zinc finger- 36.4 11 0.00025 33.3 -0.1 19 250-268 196-218 (230)
117 COG5183 SSM4 Protein involved 36.4 14 0.0003 38.5 0.5 47 223-269 8-66 (1175)
118 KOG0825 PHD Zn-finger protein 36.3 11 0.00025 38.9 -0.1 43 229-272 101-157 (1134)
119 PRK11677 hypothetical protein; 35.2 88 0.0019 25.4 4.9 8 172-179 16-23 (134)
120 PHA02610 uvsY.-2 hypothetical 34.9 16 0.00035 24.6 0.5 14 259-272 2-15 (53)
121 PF09835 DUF2062: Uncharacteri 34.5 1.8E+02 0.0039 23.5 6.9 28 141-168 104-131 (154)
122 PF11190 DUF2976: Protein of u 34.1 1.4E+02 0.003 22.4 5.4 53 126-184 2-54 (87)
123 PF04216 FdhE: Protein involve 33.5 28 0.00062 31.6 2.0 46 227-273 172-226 (290)
124 KOG4218 Nuclear hormone recept 33.1 19 0.00041 33.8 0.8 17 225-241 13-29 (475)
125 PF12120 Arr-ms: Rifampin ADP- 33.0 33 0.00072 26.1 1.9 46 51-118 52-97 (100)
126 KOG1705 Uncharacterized conser 32.6 18 0.0004 27.3 0.5 34 228-266 28-63 (110)
127 PF01102 Glycophorin_A: Glycop 32.5 67 0.0015 25.6 3.8 25 159-183 66-90 (122)
128 COG1198 PriA Primosomal protei 32.3 22 0.00047 36.9 1.1 15 244-258 440-454 (730)
129 PRK00523 hypothetical protein; 32.1 1.7E+02 0.0036 21.2 5.3 27 156-182 6-32 (72)
130 PRK13887 conjugal transfer pro 31.9 56 0.0012 29.2 3.6 38 130-167 28-65 (250)
131 PHA02825 LAP/PHD finger-like p 31.8 23 0.00051 29.5 1.0 43 226-269 7-59 (162)
132 COG1592 Rubrerythrin [Energy p 31.1 22 0.00047 30.0 0.7 25 244-272 139-163 (166)
133 PF09237 GAGA: GAGA factor; I 30.1 7.4 0.00016 26.2 -1.7 10 260-269 26-35 (54)
134 KOG2041 WD40 repeat protein [G 29.6 2.6E+02 0.0056 29.3 8.0 13 259-271 1175-1187(1189)
135 KOG3970 Predicted E3 ubiquitin 29.0 25 0.00054 31.1 0.8 42 228-270 51-106 (299)
136 PF10571 UPF0547: Uncharacteri 28.8 35 0.00075 19.5 1.1 17 251-267 3-23 (26)
137 PF03954 Lectin_N: Hepatic lec 28.5 1.6E+02 0.0035 24.0 5.3 50 129-179 7-57 (138)
138 PRK01343 zinc-binding protein; 28.3 31 0.00067 23.8 1.0 11 259-269 10-20 (57)
139 KOG0298 DEAD box-containing he 28.1 14 0.00031 40.2 -1.0 43 227-270 1153-1200(1394)
140 PF14569 zf-UDP: Zinc-binding 27.7 21 0.00045 26.2 0.1 43 227-270 9-63 (80)
141 KOG2930 SCF ubiquitin ligase, 27.3 22 0.00047 27.6 0.1 27 240-267 76-106 (114)
142 PF01336 tRNA_anti-codon: OB-f 26.9 73 0.0016 21.7 2.9 59 39-131 12-70 (75)
143 KOG4451 Uncharacterized conser 25.7 19 0.00042 31.8 -0.5 20 250-269 251-274 (286)
144 PRK00398 rpoP DNA-directed RNA 25.6 29 0.00063 22.3 0.5 22 248-269 3-32 (46)
145 KOG1815 Predicted E3 ubiquitin 25.5 20 0.00044 34.8 -0.4 30 227-257 70-100 (444)
146 KOG1812 Predicted E3 ubiquitin 25.0 17 0.00037 34.7 -1.0 30 227-257 146-179 (384)
147 PF09297 zf-NADH-PPase: NADH p 25.0 25 0.00053 20.9 0.0 20 247-267 3-30 (32)
148 PF12123 Amidase02_C: N-acetyl 24.9 85 0.0018 20.5 2.6 28 125-153 7-35 (45)
149 PF07975 C1_4: TFIIH C1-like d 24.8 35 0.00075 22.9 0.7 21 244-265 26-50 (51)
150 PRK01844 hypothetical protein; 24.5 2.3E+02 0.0051 20.4 5.0 23 159-181 8-30 (72)
151 PF07047 OPA3: Optic atrophy 3 24.3 2.6E+02 0.0057 22.4 6.0 14 135-148 60-73 (134)
152 PF13240 zinc_ribbon_2: zinc-r 23.8 34 0.00074 18.9 0.5 18 251-268 2-23 (23)
153 PF10235 Cript: Microtubule-as 23.5 40 0.00087 25.4 1.0 37 228-270 45-81 (90)
154 TIGR00595 priA primosomal prot 23.3 42 0.00091 33.2 1.3 14 244-257 218-231 (505)
155 PF14159 CAAD: CAAD domains of 23.2 2E+02 0.0043 21.5 4.7 34 164-197 52-85 (90)
156 PF08229 SHR3_chaperone: ER me 23.1 2.7E+02 0.0059 24.1 6.1 14 99-112 81-95 (196)
157 PF02891 zf-MIZ: MIZ/SP-RING z 22.7 53 0.0012 21.7 1.3 38 229-267 4-50 (50)
158 COG3701 TrbF Type IV secretory 22.6 43 0.00093 29.2 1.1 46 133-178 17-62 (228)
159 PF14316 DUF4381: Domain of un 22.6 2E+02 0.0044 23.1 5.1 12 170-181 35-46 (146)
160 PF10882 bPH_5: Bacterial PH d 22.4 1.6E+02 0.0035 21.7 4.2 29 123-152 70-98 (100)
161 PLN02638 cellulose synthase A 22.3 50 0.0011 35.7 1.7 43 227-269 17-70 (1079)
162 COG3809 Uncharacterized protei 22.3 35 0.00076 25.1 0.4 8 259-266 22-29 (88)
163 COG3114 CcmD Heme exporter pro 21.6 3E+02 0.0066 19.4 6.8 18 156-173 17-34 (67)
164 COG4306 Uncharacterized protei 21.4 29 0.00063 27.9 -0.2 20 251-270 31-51 (160)
165 PF07787 DUF1625: Protein of u 20.9 5.2E+02 0.011 22.7 7.8 64 108-174 132-203 (248)
166 KOG1819 FYVE finger-containing 20.8 1.4E+02 0.0031 29.6 4.3 28 229-257 903-934 (990)
167 TIGR03141 cytochro_ccmD heme e 20.6 2.5E+02 0.0053 18.0 5.6 12 157-168 7-18 (45)
168 COG1507 Uncharacterized conser 20.5 5E+02 0.011 21.5 7.9 61 88-154 10-70 (167)
169 cd04483 hOBFC1_like hOBFC1_lik 20.2 1.2E+02 0.0026 22.6 3.0 26 102-128 59-84 (92)
170 smart00834 CxxC_CXXC_SSSS Puta 20.1 49 0.0011 20.2 0.7 14 258-271 26-39 (41)
171 PHA02700 ORF017 DNA-binding ph 20.0 67 0.0014 24.7 1.5 21 44-64 8-29 (106)
No 1
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-49 Score=358.95 Aligned_cols=275 Identities=34% Similarity=0.580 Sum_probs=255.2
Q ss_pred cccccccceeeeecceeEEEEEEeCCCCccccchhheeccccEeeEEEeCCCeE----EEEeCCCCcccceeeeeeeEee
Q 023757 2 RSFLRQSRVSINSRSWTERHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGC----VFVVGARGATGFALTVGSEVFE 77 (277)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~eh~~~~~~~~~W~~~~~~~~~~~~~vPf~L~d~~~~----V~V~~~~~a~~~~l~~v~~~f~ 77 (277)
++-+.+...||++.-|++||++..+..|.|++.+++++...|++||+|.++++. |+|..++.+..++++++|+.|+
T Consensus 74 ~~~~v~~v~gvv~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~l~~q~~~~~~~~~~s~~~~~~~l~l~~~~d~f~ 153 (355)
T KOG1571|consen 74 RSLCVSNVPGVVQALTLEEPKGRRDGGGHWNANSKIFHEGGNEVPFFLRSQTTGFACEVRVSKTLGRLFLPLNVVYDLFE 153 (355)
T ss_pred HHhhcccCCceEEEeeeccceeeeccceeeccceeeccCCCcccceeeccCCcceeeeeeeecceeeeeecceeeecccc
Confidence 456778899999999999999998899999999999999999999999999887 9999999999999999999999
Q ss_pred cCc-ccccccccccccceeeeeeeeeecccCCCceEEEEEEEEeCCCCCeEEeCCCCCCeEEecCChHHHHHHhhhhHHH
Q 023757 78 ESG-RSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWARW 156 (277)
Q Consensus 78 ~~~-~~~~~~~~~~~~g~~~~G~~~~E~vL~~G~~lt~vGe~~~d~~g~~~iq~P~~g~f~ls~~s~~~Ll~~l~s~~r~ 156 (277)
|+. .++.++.++|++|.++.|++++|++||+|+.+|++||++.|+.++.++|+|.+|++|+....+|+||.+++.+++.
T Consensus 154 ~s~p~s~~~~~~~~~sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~~d~LIsr~g~~s~~ 233 (355)
T KOG1571|consen 154 PSDPCSLVDVGGGYHSGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSAADRLISREGDLSFF 233 (355)
T ss_pred ccCcceeeecccccccceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccchhhHHHhhccceee
Confidence 998 7999999999999999999999999999999999999999988999999999996555555599999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCCCCCCcccCCcccccccccc
Q 023757 157 YKYASFGLTIFGAFLIAKRVIRCILQ--RKRRWELRRRVLAAAAVQRSEQDNEGTNGQAENGSDSTQRDRVMPDLCVICL 234 (277)
Q Consensus 157 ~~~~si~~~~vGv~ll~~~~~r~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iC~ 234 (277)
.++.++++++.+++++.+...++|.+ +++++++.++...++. .+.+..+.+.++.-++++++.+.+...+++|+||.
T Consensus 234 ~kv~~~~~~~~~~ills~~~~d~~led~r~~r~~l~k~~~~~~~-~rae~~s~g~~gtr~~~~~~~~~~~~~p~lcVVcl 312 (355)
T KOG1571|consen 234 VKVNGMVFGTLGVILLSFIVKDNYLEDDRRQRRELVKRVEDLAT-VRAELLSRGVRGTRIQNENGTFRELPQPDLCVVCL 312 (355)
T ss_pred eeecceeeeeeeEEeehHHHHHHHHHHHHHHHHHHHHhhhhhhh-heeeeecccccccccccccCcccccCCCCceEEec
Confidence 99999999999999999999999988 8888888888888877 77777777777776777777777778889999999
Q ss_pred ccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 235 EQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 235 ~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
+++.+++|+||||+|||..|+..++.||+||+.|..++++|+|
T Consensus 313 ~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 313 DEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999987
No 2
>PF12483 GIDE: E3 Ubiquitin ligase; InterPro: IPR022170 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 150 and 163 amino acids in length. There is a single completely conserved residue E that may be functionally important. GIDE is an E3 ubiquitin ligase which is involved in inducing apoptosis. ; GO: 0016881 acid-amino acid ligase activity
Probab=100.00 E-value=5.9e-34 Score=238.47 Aligned_cols=140 Identities=36% Similarity=0.617 Sum_probs=135.4
Q ss_pred CCccccchhheeccccEeeEEEeCCCeEEEEeCCCCcccceeeeeeeEeecCccccccccccccccee---eeeeeeeec
Q 023757 28 AGSWIQDSALMLSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLK---MLGVKRIGR 104 (277)
Q Consensus 28 ~~~W~~~~~~~~~~~~~vPf~L~d~~~~V~V~~~~~a~~~~l~~v~~~f~~~~~~~~~~~~~~~~g~~---~~G~~~~E~ 104 (277)
+++|.++++++++..+++||+|+|++|+|+|+++..++++++++++++|+|...+..+.++++++|.+ ++||+++|+
T Consensus 12 ~~~~~~~~~~v~~~~~~vPF~L~D~tg~v~V~~~p~~a~l~l~~v~~~f~p~~~~~~~~~~~~~~~~~~~~~~G~r~~E~ 91 (160)
T PF12483_consen 12 SRRWSSSWRTVSSGTSEVPFYLEDGTGRVRVVDDPEGAELDLETVYDRFEPSPSSPPDGLFGFFSGERELEPKGYRYTEE 91 (160)
T ss_pred CCcccccEEEEEcceeEcCEEEECCceEEEEecCcccCccceeeEEEEeEECCCCccceeeeeeccceeccccccEEEEE
Confidence 79999999999999999999999999999999888888999999999999998889999999999999 999999999
Q ss_pred ccCCCceEEEEEEEEeCCCCCeEEeCCCCC--CeEEecCChHHHHHHhhhhHHHHHHHHhHHHHH
Q 023757 105 LLPTGTSLTVVGEAVKDDIGTVRIQRPHKG--PFYVSPKTIDELLENLGKWARWYKYASFGLTIF 167 (277)
Q Consensus 105 vL~~G~~lt~vGe~~~d~~g~~~iq~P~~g--~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~v 167 (277)
|||+|++|||+|++..|++|++.||+|++| |||||++++++|++++.+++++|+|++++++++
T Consensus 92 ~L~~G~~ltvvGe~~~~~~g~~~i~~p~~g~~~f~iS~~s~~~l~~~~~~~~~~~~~~~i~~~~~ 156 (160)
T PF12483_consen 92 ILPVGTPLTVVGELVRDGDGNLVIQPPKDGGQPFFISTKSEEELIRSLRSSARWWKWLAIALGVV 156 (160)
T ss_pred EcCCCCEEEEEEEEEEcCCCcEEEeCCCCCCccEEEeCCCHHHHHHHHHHHHHHHHHHHhheeEE
Confidence 999999999999999999999999999998 999999999999999999999999999999876
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.6e-14 Score=96.86 Aligned_cols=50 Identities=44% Similarity=1.152 Sum_probs=46.8
Q ss_pred cccccccccccceEEecCCCcccCccchhcC-----CCCccccccccceeecccC
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~~~~~f~~ 277 (277)
+.|.||++++.+.+++-|||+|.|.+|...+ ..||+||++|..+++.|+|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5899999999999999999999999999875 4799999999999999986
No 4
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-12 Score=119.67 Aligned_cols=52 Identities=38% Similarity=0.981 Sum_probs=46.7
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccceeeccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 276 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~f~ 276 (277)
++...|+||++..++.+++||+|+|+|..|+..+ .+|||||++|.....++-
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 3456899999999999999999999999999987 479999999999888764
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.4e-12 Score=115.76 Aligned_cols=51 Identities=43% Similarity=1.070 Sum_probs=49.2
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
..+|.||++.|++++||+|||+..|..|...+..|||||+.|.+++++|+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 569999999999999999999999999999999999999999999999984
No 6
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.23 E-value=2.5e-12 Score=86.83 Aligned_cols=45 Identities=47% Similarity=1.198 Sum_probs=39.1
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC----CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~ 271 (277)
+..|.||++++++++++||||.+.|..|+..+ ..||+||++|.++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35899999999999999999997799999987 7999999999864
No 7
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.3e-09 Score=92.95 Aligned_cols=49 Identities=33% Similarity=0.712 Sum_probs=42.7
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-------CCCccccccccc--eeecc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i~~--~~~~f 275 (277)
....|-||++..+++|+..|||++ ||.|+-+. +.||+|+..|+. ++++|
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 356999999999999999999999 99999773 579999988764 78877
No 8
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=4.7e-09 Score=93.63 Aligned_cols=46 Identities=35% Similarity=0.870 Sum_probs=40.4
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCcccccccccee
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
....|.+|++++.+...+||||+| ||.|+... ..||+||.++....
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcc
Confidence 346999999999999999999999 99999874 68999999987643
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.64 E-value=1.3e-08 Score=86.69 Aligned_cols=49 Identities=33% Similarity=0.788 Sum_probs=41.4
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC--------------------CCCccccccccc--eeecc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL--------------------TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l--------------------~~CPiCR~~i~~--~~~~f 275 (277)
....|.||++...++++++|||.+ |+.|+... ..||+||..|.. ++++|
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356899999999999999999999 99999631 479999999975 56665
No 10
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.4e-08 Score=83.81 Aligned_cols=47 Identities=38% Similarity=0.867 Sum_probs=44.2
Q ss_pred ccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecc
Q 023757 229 LCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTF 275 (277)
Q Consensus 229 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f 275 (277)
.|..|..+...++++||.|+|+|..|...+..||+|+.++...+.+|
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence 49999999999999999999999999988889999999999888776
No 11
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=5.3e-07 Score=83.48 Aligned_cols=43 Identities=37% Similarity=0.797 Sum_probs=34.5
Q ss_pred cccccccccccc---eEEecCCCcccCccchhcC-----CCCccccccccce
Q 023757 228 DLCVICLEQEYN---AVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQV 271 (277)
Q Consensus 228 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~~ 271 (277)
..|+||++.... ..+|||.|.+. ..|++.. ..||+|++.|...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH-~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFH-VNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchh-hccchhhHhhcCccCCCCCCcCCCC
Confidence 599999996643 67789999995 5999874 3599999988653
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.36 E-value=1.1e-07 Score=60.72 Aligned_cols=34 Identities=41% Similarity=1.118 Sum_probs=28.6
Q ss_pred cccccccccce-EEecCCCcccCccchhcC----CCCccc
Q 023757 230 CVICLEQEYNA-VFFPCGHLCCCLICSSRL----TNCPLC 264 (277)
Q Consensus 230 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~l----~~CPiC 264 (277)
|+||++...++ ++++|||.+ |.+|+.+. .+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999998 689999998 99999764 689988
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-07 Score=78.37 Aligned_cols=48 Identities=33% Similarity=0.805 Sum_probs=38.1
Q ss_pred ccccccccccccceE--EecCCCcccCccchhcC----CCCccccccccc--eeecc
Q 023757 227 PDLCVICLEQEYNAV--FFPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~--~~~~f 275 (277)
-..|+|||+.....+ -..|||+| |..|+... .+||+|+..|+. +.+||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 358999999776544 47999999 99999874 589999998875 45554
No 14
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.32 E-value=2.1e-07 Score=82.42 Aligned_cols=47 Identities=30% Similarity=0.884 Sum_probs=37.7
Q ss_pred ccccccccccccc--------eEEecCCCcccCccchhcC----CCCccccccccceeec
Q 023757 227 PDLCVICLEQEYN--------AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 274 (277)
Q Consensus 227 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~ 274 (277)
...|+||++...+ .++.+|||.+ |..|+... .+||+||.++..+++.
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4589999996432 4667899999 99999763 6899999999987653
No 15
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.24 E-value=2.7e-07 Score=60.33 Aligned_cols=36 Identities=42% Similarity=0.958 Sum_probs=30.1
Q ss_pred ccccccccc---cceEEecCCCcccCccchhcC----CCCcccc
Q 023757 229 LCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCR 265 (277)
Q Consensus 229 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l----~~CPiCR 265 (277)
.|+||++.. ..++.++|||.+ |.+|+... .+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999865 468888999999 99999874 6999998
No 16
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.20 E-value=4.8e-07 Score=59.27 Aligned_cols=36 Identities=39% Similarity=1.080 Sum_probs=31.3
Q ss_pred cccccccc---cceEEecCCCcccCccchhcCC----CCccccc
Q 023757 230 CVICLEQE---YNAVFFPCGHLCCCLICSSRLT----NCPLCRR 266 (277)
Q Consensus 230 C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l~----~CPiCR~ 266 (277)
|.+|++.. ....+++|||.+ |..|+..+. .||+||+
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 88898866 468889999999 999999875 9999985
No 17
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=3.6e-07 Score=87.41 Aligned_cols=47 Identities=34% Similarity=0.730 Sum_probs=40.6
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC---------CCCccccccccc--eeec
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---------TNCPLCRRRIDQ--VVRT 274 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l---------~~CPiCR~~i~~--~~~~ 274 (277)
+..|+||++.+..++.+.|||++ |..|+-+. ..||+||..|.. +.++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence 56899999999999999999999 88998763 589999999987 4444
No 18
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.3e-07 Score=90.54 Aligned_cols=47 Identities=30% Similarity=0.646 Sum_probs=41.1
Q ss_pred cccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc--eeecc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~--~~~~f 275 (277)
-.|++|.++++++++..|||+| |..|.... .+||.|..++.. +.+||
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred eeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 4899999999999999999999 99999874 799999999875 45544
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.02 E-value=1.7e-06 Score=56.11 Aligned_cols=34 Identities=47% Similarity=1.082 Sum_probs=26.8
Q ss_pred cccccccccceEEecCCCcccCccchhcC--------CCCccc
Q 023757 230 CVICLEQEYNAVFFPCGHLCCCLICSSRL--------TNCPLC 264 (277)
Q Consensus 230 C~iC~~~~~~~~~~pCgH~~~C~~C~~~l--------~~CPiC 264 (277)
|+||++-..+++.++|||.+ |..|+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 99999763 269987
No 20
>PHA02926 zinc finger-like protein; Provisional
Probab=98.01 E-value=1.1e-06 Score=76.05 Aligned_cols=46 Identities=33% Similarity=0.842 Sum_probs=36.2
Q ss_pred ccccccccccc---------cceEEecCCCcccCccchhcC----------CCCccccccccceee
Q 023757 227 PDLCVICLEQE---------YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRIDQVVR 273 (277)
Q Consensus 227 ~~~C~iC~~~~---------~~~~~~pCgH~~~C~~C~~~l----------~~CPiCR~~i~~~~~ 273 (277)
+..|.||++.. +-.++.+|+|.| |..|+... ..||+||..+..+.+
T Consensus 170 E~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 170 EKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 46899999852 236788999999 99999864 249999999886543
No 21
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=2.1e-06 Score=76.06 Aligned_cols=43 Identities=40% Similarity=0.865 Sum_probs=37.5
Q ss_pred ccccccccccccceEEecCCCcccCccchhc-C-----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSR-L-----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-l-----~~CPiCR~~i~~ 270 (277)
+..|+||++.+..+...||||+| |+.|+.. . ..||+||+.+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~p 263 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVYP 263 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhccc
Confidence 45899999999999999999999 9999876 2 359999998764
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.88 E-value=3.5e-06 Score=53.99 Aligned_cols=34 Identities=47% Similarity=1.144 Sum_probs=30.1
Q ss_pred cccccccccceE-EecCCCcccCccchhcC------CCCccc
Q 023757 230 CVICLEQEYNAV-FFPCGHLCCCLICSSRL------TNCPLC 264 (277)
Q Consensus 230 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~l------~~CPiC 264 (277)
|.||++...+.+ +++|||.+ |..|+... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 889999999888 89999998 99998763 479988
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.85 E-value=6.6e-06 Score=50.86 Aligned_cols=34 Identities=44% Similarity=1.181 Sum_probs=29.9
Q ss_pred cccccccccceEEecCCCcccCccchhcC-----CCCccc
Q 023757 230 CVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLC 264 (277)
Q Consensus 230 C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiC 264 (277)
|.||++...+.+++||||.+ |..|.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999998 99999743 579987
No 24
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.84 E-value=6.5e-06 Score=52.74 Aligned_cols=39 Identities=46% Similarity=1.095 Sum_probs=30.5
Q ss_pred ccccccccccceEE-ecCCCcccCccchhcC-----CCCccccccc
Q 023757 229 LCVICLEQEYNAVF-FPCGHLCCCLICSSRL-----TNCPLCRRRI 268 (277)
Q Consensus 229 ~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~l-----~~CPiCR~~i 268 (277)
.|.||++...+.+. .+|||.+ |..|.... ..||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 48999998855444 4599998 99999742 5799999764
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.77 E-value=7.3e-06 Score=77.63 Aligned_cols=44 Identities=32% Similarity=0.690 Sum_probs=38.3
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
....|.||++...+++++||||.| |..|+... ..||+||..+..
T Consensus 25 ~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 456999999999999999999999 99999753 579999998764
No 26
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4.6e-05 Score=70.53 Aligned_cols=42 Identities=33% Similarity=0.899 Sum_probs=32.7
Q ss_pred cccccccccccc-------------cceEEecCCCcccCccchhc----CCCCccccccc
Q 023757 226 MPDLCVICLEQE-------------YNAVFFPCGHLCCCLICSSR----LTNCPLCRRRI 268 (277)
Q Consensus 226 ~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~----l~~CPiCR~~i 268 (277)
.+..|.||++.- ..+-=+||||.. .-.|... .++||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 356999999861 223557999998 7899876 37999999984
No 27
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.74 E-value=6.5e-06 Score=76.59 Aligned_cols=49 Identities=35% Similarity=0.786 Sum_probs=41.5
Q ss_pred CccccccccccccccceEEecCCCcccCccchhcC------CCCccccccccceee
Q 023757 224 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQVVR 273 (277)
Q Consensus 224 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l------~~CPiCR~~i~~~~~ 273 (277)
+..-.+|.||-++.+++-+-||||+. |..|.... ..||.||..|.+..+
T Consensus 366 gsTFeLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 366 GSTFELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred cchHHHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 33456999999999999999999998 99998653 589999999987543
No 28
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=97.72 E-value=1.3e-05 Score=55.98 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=37.0
Q ss_pred cccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
..|+||.+...+.+..||||++ |..|+... ..||+|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCCh
Confidence 3699999999999999999999 99999864 589999998853
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.56 E-value=2.1e-05 Score=51.29 Aligned_cols=27 Identities=41% Similarity=0.987 Sum_probs=17.9
Q ss_pred cccccccccc----eEEecCCCcccCccchhcC
Q 023757 230 CVICLEQEYN----AVFFPCGHLCCCLICSSRL 258 (277)
Q Consensus 230 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~l 258 (277)
|+||.+ ..+ +++|||||++ |.+|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHH
Confidence 889998 666 8889999999 99999875
No 30
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.47 E-value=5e-05 Score=51.63 Aligned_cols=43 Identities=30% Similarity=0.725 Sum_probs=37.6
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC--CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l--~~CPiCR~~i~~ 270 (277)
...|+.|......-+++||||+. |..|.... ..||+|-.+|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence 34799999998899999999998 99998764 799999999875
No 31
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=5.3e-05 Score=69.67 Aligned_cols=44 Identities=34% Similarity=0.806 Sum_probs=39.1
Q ss_pred cccccccccccccceEEecCCCcccCccchhc----CCCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSR----LTNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----l~~CPiCR~~i~~ 270 (277)
++++|+||+..+.+++|.||+|.- |..|+.+ .+.|-.|+..+..
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeee
Confidence 356999999999999999999998 9999987 2789999988775
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.36 E-value=5.5e-05 Score=67.88 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=37.6
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCcccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
....|-||...-+..++.+|||.| |.-|+..- +.||+||.+..
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHH
Confidence 345899999999999999999999 99999873 79999997643
No 33
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0001 Score=66.60 Aligned_cols=41 Identities=29% Similarity=0.729 Sum_probs=34.3
Q ss_pred cccccccccc---cceEEecCCCcccCccchhcC-----CCCcccccccc
Q 023757 228 DLCVICLEQE---YNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRID 269 (277)
Q Consensus 228 ~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~ 269 (277)
-.|+||+++. ...+.+||.|.+ ...|..+. .+||+||.+|.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 5899999854 347888999999 79999874 48999999875
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.29 E-value=5.8e-05 Score=69.05 Aligned_cols=43 Identities=28% Similarity=0.713 Sum_probs=38.5
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
-..|-||.+-.+.++++||+|.| |.-|+... +.||.|+..+..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 34899999999999999999999 99999874 799999988764
No 35
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.18 E-value=0.00016 Score=52.53 Aligned_cols=36 Identities=44% Similarity=0.993 Sum_probs=27.3
Q ss_pred ccccccccc-------------cceEEecCCCcccCccchhcC----CCCcccc
Q 023757 229 LCVICLEQE-------------YNAVFFPCGHLCCCLICSSRL----TNCPLCR 265 (277)
Q Consensus 229 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~l----~~CPiCR 265 (277)
.|.||++.- ..++..+|||.| ...|+... .+||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 599999744 334667999999 89999863 6999998
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0001 Score=65.61 Aligned_cols=40 Identities=43% Similarity=0.932 Sum_probs=35.3
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRR 266 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~ 266 (277)
....|.||++......++||||.+ |..|+... -.||.||.
T Consensus 12 ~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 12 EELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 356899999999999999999999 99999875 48999993
No 37
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.08 E-value=0.00042 Score=63.74 Aligned_cols=46 Identities=39% Similarity=0.878 Sum_probs=38.6
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC------CCCcccccccccee
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQVV 272 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l------~~CPiCR~~i~~~~ 272 (277)
+...|+||-..---..++||+|.. |..|+-.+ +.||+||..-+.++
T Consensus 60 en~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 60 ENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 356999999988888889999998 99999774 68999998766554
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0011 Score=65.77 Aligned_cols=42 Identities=36% Similarity=0.851 Sum_probs=35.5
Q ss_pred cccccccccccccc-----eEEecCCCcccCccchhcC----CCCccccccc
Q 023757 226 MPDLCVICLEQEYN-----AVFFPCGHLCCCLICSSRL----TNCPLCRRRI 268 (277)
Q Consensus 226 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i 268 (277)
....|.||.+.-.. +..+||||.+ |..|.... .+||+||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 35699999997766 7889999999 99999873 7999999843
No 39
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.82 E-value=0.00056 Score=48.07 Aligned_cols=40 Identities=28% Similarity=0.708 Sum_probs=22.6
Q ss_pred cccccccccccceE-EecCCCcccCccchhcC--CCCccccccc
Q 023757 228 DLCVICLEQEYNAV-FFPCGHLCCCLICSSRL--TNCPLCRRRI 268 (277)
Q Consensus 228 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~l--~~CPiCR~~i 268 (277)
..|.+|.+--+.++ +..|.|.+ |..|+... ..||+|+.+-
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B--TTTGGGGTTTB-SSS--B-
T ss_pred cCCcHHHHHhcCCceeccCccHH-HHHHhHHhcCCCCCCcCChH
Confidence 47999999988886 57999999 99999875 6899999875
No 40
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.50 E-value=0.00063 Score=58.07 Aligned_cols=46 Identities=30% Similarity=0.697 Sum_probs=39.2
Q ss_pred CccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 224 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 224 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
+..+..|.||....+.+|+..|||.+ |..|+..- +.|.+|...-..
T Consensus 193 e~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G 242 (259)
T COG5152 193 EKIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYG 242 (259)
T ss_pred CCCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhcc
Confidence 34578999999999999999999999 99998763 689999876543
No 41
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=96.33 E-value=0.0019 Score=46.79 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=33.5
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
...|+||.+--.+++++||||.+ +..|+... ..||+|++++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 56899999999999999999999 89998762 579999998876
No 42
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0081 Score=55.09 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=37.2
Q ss_pred CCccccccccccccccceEEec-CCCcccCccchhcC----CCCccccc--cccceeeccc
Q 023757 223 DRVMPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL----TNCPLCRR--RIDQVVRTFR 276 (277)
Q Consensus 223 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~l----~~CPiCR~--~i~~~~~~f~ 276 (277)
...+...|++|+....|...+. -|-++ |+.|+..- ..||+-.. .++..+++|.
T Consensus 296 l~~~~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~~ 355 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLFN 355 (357)
T ss_pred CCCccccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHhc
Confidence 3445669999999887765554 48888 99998763 78998554 4445565553
No 43
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0025 Score=57.54 Aligned_cols=47 Identities=28% Similarity=0.742 Sum_probs=40.5
Q ss_pred CccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccce
Q 023757 224 RVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQV 271 (277)
Q Consensus 224 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~ 271 (277)
...+..|-||.....+.|...|||.+ |..|+..- ..|++|-+.+.++
T Consensus 238 ~~~Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 238 ELLPFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred ccCCccccccccccccchhhcCCcee-ehhhhccccccCCcceecccccccc
Confidence 34466899999999999999999999 99998763 6899999988764
No 44
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0029 Score=60.20 Aligned_cols=45 Identities=40% Similarity=0.868 Sum_probs=38.4
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
..+..|.||+..-...+.+||||.+ |..|..+. ..||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 3467999999999999999999999 99996653 689999988764
No 45
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.56 E-value=0.0081 Score=57.18 Aligned_cols=41 Identities=29% Similarity=0.729 Sum_probs=31.5
Q ss_pred ccccccccccccc----eEEecCCCcccCccchhcC--CCCccccccc
Q 023757 227 PDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL--TNCPLCRRRI 268 (277)
Q Consensus 227 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~l--~~CPiCR~~i 268 (277)
-..|+||+++--. ++-++|.|.|.| .|.... ..||+||---
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~-~cl~~w~~~scpvcR~~q 221 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHC-SCLMKWWDSSCPVCRYCQ 221 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccch-HHHhhcccCcChhhhhhc
Confidence 4599999986643 355699999966 888775 6999999543
No 46
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0095 Score=53.42 Aligned_cols=45 Identities=27% Similarity=0.665 Sum_probs=36.6
Q ss_pred ccccccccccccccceEE-ecCCCcccCccchhcC------CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL------TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~l------~~CPiCR~~i~~ 270 (277)
.....|++|-+.|..+.. .||||.+ |..|+... -.||.|..++..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~~ 288 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVEP 288 (298)
T ss_pred cCCceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCcc
Confidence 345689999999987654 4799999 99999873 389999988764
No 47
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.0013 Score=60.78 Aligned_cols=44 Identities=27% Similarity=0.655 Sum_probs=35.5
Q ss_pred ccccccccccccceE-EecCCCcccCccchhcC-----CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAV-FFPCGHLCCCLICSSRL-----TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~~ 271 (277)
...|.||++--+... ...|+|.| |.+|+... ..||-||+...+.
T Consensus 43 ~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 43 QVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 459999999776544 45899999 99999873 6899999987753
No 48
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.0031 Score=60.59 Aligned_cols=43 Identities=30% Similarity=0.722 Sum_probs=34.1
Q ss_pred ccccccccc-----------------cccceEEecCCCcccCccchhcC----C-CCccccccccc
Q 023757 227 PDLCVICLE-----------------QEYNAVFFPCGHLCCCLICSSRL----T-NCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~-----------------~~~~~~~~pCgH~~~C~~C~~~l----~-~CPiCR~~i~~ 270 (277)
...|+||+. -.++..+.||.|++ -..|..+. + .||+||+++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCCC
Confidence 348999996 22467788999999 78998763 3 89999998764
No 49
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.0067 Score=56.69 Aligned_cols=46 Identities=33% Similarity=0.704 Sum_probs=36.2
Q ss_pred ccccccccccccceE-----E---ecCCCcccCccchhcC-----------CCCccccccccceee
Q 023757 227 PDLCVICLEQEYNAV-----F---FPCGHLCCCLICSSRL-----------TNCPLCRRRIDQVVR 273 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~l-----------~~CPiCR~~i~~~~~ 273 (277)
...|.||++...... | .+|.|.+ |-.|+... +.||.||.+...+.+
T Consensus 161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 161 EKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred cccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 458999999765554 4 7899999 99999752 589999988776543
No 50
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.54 E-value=0.021 Score=51.50 Aligned_cols=46 Identities=17% Similarity=0.375 Sum_probs=37.0
Q ss_pred Cccccccccccccc----cceEEecCCCcccCccchhcCC---CCccccccccc
Q 023757 224 RVMPDLCVICLEQE----YNAVFFPCGHLCCCLICSSRLT---NCPLCRRRIDQ 270 (277)
Q Consensus 224 ~~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~l~---~CPiCR~~i~~ 270 (277)
......|+|..... +-+.+.||||++ +..++..++ .||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELKKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhcccccccccCCcccc
Confidence 34466999998543 456777999999 899999886 89999999875
No 51
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=94.47 E-value=0.016 Score=43.20 Aligned_cols=29 Identities=28% Similarity=0.674 Sum_probs=23.1
Q ss_pred eEEecCCCcccCccchhc-------CCCCcccccccc
Q 023757 240 AVFFPCGHLCCCLICSSR-------LTNCPLCRRRID 269 (277)
Q Consensus 240 ~~~~pCgH~~~C~~C~~~-------l~~CPiCR~~i~ 269 (277)
.++-.|+|.| ...|+.+ ...||+||++..
T Consensus 47 lv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 47 LVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred eeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 3556899999 7999865 258999999764
No 52
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.024 Score=53.52 Aligned_cols=40 Identities=30% Similarity=0.688 Sum_probs=31.2
Q ss_pred cccccccccccc---ceEEecCCCcccCccchhcC------------CCCcccccc
Q 023757 227 PDLCVICLEQEY---NAVFFPCGHLCCCLICSSRL------------TNCPLCRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~l------------~~CPiCR~~ 267 (277)
...|.||++... ..+++||+|++ |..|...- -+||-|...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 458999998664 57889999999 99998651 378877643
No 53
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=94.20 E-value=0.02 Score=52.65 Aligned_cols=43 Identities=33% Similarity=0.890 Sum_probs=35.7
Q ss_pred ccccccccccccceEEecC--CCcccCccchhcC-CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAVFFPC--GHLCCCLICSSRL-TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~l-~~CPiCR~~i~~~ 271 (277)
-..|+||.+.-.-+++ -| ||+. |..|...+ ..||.||.+|..+
T Consensus 48 lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 48 LLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSNKCPTCRLPIGNI 93 (299)
T ss_pred hccCchhhccCcccce-ecCCCcEe-hhhhhhhhcccCCccccccccH
Confidence 3489999998888887 56 7998 99999554 7999999999853
No 54
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.65 E-value=0.02 Score=58.18 Aligned_cols=41 Identities=32% Similarity=0.806 Sum_probs=35.5
Q ss_pred cccccccccccceEEecCCCcccCccchhcC------CCCccccccccc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l------~~CPiCR~~i~~ 270 (277)
..|.+|++ ...+++.+|||.+ |.+|.... ..||+||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHHH
Confidence 68999999 8889999999999 99998763 479999987654
No 55
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.25 E-value=0.27 Score=37.50 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=22.3
Q ss_pred ccccccccccc--cceEEecCCCcccCccchh
Q 023757 227 PDLCVICLEQE--YNAVFFPCGHLCCCLICSS 256 (277)
Q Consensus 227 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~ 256 (277)
...|.+|...- ...++.||||++ ...|+.
T Consensus 78 ~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~ 108 (109)
T PF10367_consen 78 STKCSVCGKPLGNSVFVVFPCGHVV-HYSCIK 108 (109)
T ss_pred CCCccCcCCcCCCceEEEeCCCeEE-eccccc
Confidence 45799999754 445667999998 788875
No 56
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.027 Score=51.41 Aligned_cols=44 Identities=30% Similarity=0.714 Sum_probs=31.9
Q ss_pred ccccccccccccc-eEEecCCCcccCccchhcC--CCCccccccccce
Q 023757 227 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~l--~~CPiCR~~i~~~ 271 (277)
-.-|.-|--.-.. -.++||.|+| |.+|+..- +.||.|--+|.++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvF-Cl~CAr~~~dK~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVF-CLECARSDSDKICPLCDDRVQRI 136 (389)
T ss_pred eEeecccCCcceeeecccccchhh-hhhhhhcCccccCcCcccHHHHH
Confidence 3467777543322 2457999999 99999874 6999999887764
No 57
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=0.041 Score=49.31 Aligned_cols=46 Identities=24% Similarity=0.660 Sum_probs=35.2
Q ss_pred Ccccccccccccccc----------ceEEecCCCcccCccchhc------CCCCccccccccc
Q 023757 224 RVMPDLCVICLEQEY----------NAVFFPCGHLCCCLICSSR------LTNCPLCRRRIDQ 270 (277)
Q Consensus 224 ~~~~~~C~iC~~~~~----------~~~~~pCgH~~~C~~C~~~------l~~CPiCR~~i~~ 270 (277)
..+++.|.||-.+-- +.--+.|+|++ -+.|+.. .++||-|+..|+.
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCCcchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhhH
Confidence 445679999986432 33447999999 7999876 3799999998874
No 58
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.63 E-value=0.025 Score=57.33 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=31.9
Q ss_pred cccccccccccceEE---ecCCCcccCccchhcC----CCCcccccccccee
Q 023757 228 DLCVICLEQEYNAVF---FPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
..|.+|+..-.+-.. .+|+|.| |..|+... .+||+||..+..++
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~ 174 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVK 174 (1134)
T ss_pred hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheee
Confidence 366677654443222 4899999 99999875 69999998887654
No 59
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=92.04 E-value=0.068 Score=51.06 Aligned_cols=46 Identities=33% Similarity=0.699 Sum_probs=38.9
Q ss_pred cccccccccccccceEE-ecCCCcccCccchhcC----CCCcccccccccee
Q 023757 226 MPDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
.+..|.+|..--.+++- ..|||.+ |..|.... ..||.|+..+....
T Consensus 20 ~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 20 ENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred ccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchhh
Confidence 35689999999999888 5999999 99999874 58999998877643
No 60
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=90.73 E-value=0.065 Score=43.13 Aligned_cols=45 Identities=29% Similarity=0.674 Sum_probs=36.9
Q ss_pred cccccccccccceEEe----cCCCcccCccchhcC-------CCCccccccccceee
Q 023757 228 DLCVICLEQEYNAVFF----PCGHLCCCLICSSRL-------TNCPLCRRRIDQVVR 273 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~l-------~~CPiCR~~i~~~~~ 273 (277)
-.|-||.+...+-.|+ =||-.. |..|...+ +.||+|+.++.+.-.
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKss~~ 136 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKSSSS 136 (140)
T ss_pred eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCccccccccccc
Confidence 4899999999888887 377555 99999875 799999999877543
No 61
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=0.13 Score=45.65 Aligned_cols=42 Identities=21% Similarity=0.427 Sum_probs=33.8
Q ss_pred ccccccccccc----ceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 228 DLCVICLEQEY----NAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
..|++|.+.-. .+++-||||++ |.+|...+ ..||+|-.+...
T Consensus 222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 222 YICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred eecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 48999987443 35667999999 99999986 589999987654
No 62
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=89.75 E-value=0.29 Score=44.93 Aligned_cols=48 Identities=6% Similarity=-0.154 Sum_probs=42.0
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC--CCCccccccccceeec
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQVVRT 274 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l--~~CPiCR~~i~~~~~~ 274 (277)
...|.+|-.+--..++.||||...|.+|+... +.||+|.......++|
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 34899999999999999999999999999864 7999999887777765
No 63
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.72 E-value=0.1 Score=56.29 Aligned_cols=46 Identities=30% Similarity=0.905 Sum_probs=35.1
Q ss_pred ccccccccccccc---cceEEecCCCcccCccchhcC--------------CCCccccccccce
Q 023757 225 VMPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL--------------TNCPLCRRRIDQV 271 (277)
Q Consensus 225 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l--------------~~CPiCR~~i~~~ 271 (277)
+.+++|+||+... .-++-+.|+|++ -..|.... ..||+|..+|.-+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3467999999865 446778999999 56776542 4899999998753
No 64
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=88.91 E-value=0.086 Score=51.42 Aligned_cols=41 Identities=22% Similarity=0.646 Sum_probs=35.2
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC---------CCCccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---------TNCPLCRRRI 268 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l---------~~CPiCR~~i 268 (277)
.-.|.+|.+...+.+...|.|.+ |.-|.... .+||+|-...
T Consensus 536 ~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 536 EVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred ceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCccccccc
Confidence 45899999999999999999999 99998541 5999998544
No 65
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=86.66 E-value=0.26 Score=32.84 Aligned_cols=36 Identities=28% Similarity=0.796 Sum_probs=26.8
Q ss_pred ccccccc--cccceEEecCC-----CcccCccchhcC------CCCcccc
Q 023757 229 LCVICLE--QEYNAVFFPCG-----HLCCCLICSSRL------TNCPLCR 265 (277)
Q Consensus 229 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~l------~~CPiCR 265 (277)
.|-||++ .+.+..+.||. |.+ -..|.... ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3889996 56677888996 455 67888762 4799995
No 66
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.10 E-value=0.14 Score=45.17 Aligned_cols=39 Identities=28% Similarity=0.792 Sum_probs=28.3
Q ss_pred ccccccccccc---cceEEe--c-CCCcccCccchhcC-----CCCc--cccc
Q 023757 227 PDLCVICLEQE---YNAVFF--P-CGHLCCCLICSSRL-----TNCP--LCRR 266 (277)
Q Consensus 227 ~~~C~iC~~~~---~~~~~~--p-CgH~~~C~~C~~~l-----~~CP--iCR~ 266 (277)
+..|++|.... .++.++ | |-|.. |.+|.... ..|| .|..
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHH
Confidence 44899998633 233333 6 99998 99999875 5899 7864
No 67
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=85.11 E-value=0.27 Score=46.51 Aligned_cols=43 Identities=30% Similarity=0.792 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cccceEEecCCCcccCccchhc-----C--------CCCccccccccc
Q 023757 227 PDLCVICLE-------------------QEYNAVFFPCGHLCCCLICSSR-----L--------TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~~-----l--------~~CPiCR~~i~~ 270 (277)
...|++|+. .+-..+|-||||+| -...+.- + ..||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999995 33556889999998 2333321 2 489999999875
No 68
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=83.69 E-value=0.31 Score=45.22 Aligned_cols=43 Identities=40% Similarity=1.045 Sum_probs=30.3
Q ss_pred ccccccccccc--cceEEe--cCCCcccCccchhcC-----CCCccccccccc
Q 023757 227 PDLCVICLEQE--YNAVFF--PCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
++.|+.|++.- .+--|. |||-.. |.-|+..+ ..||-||...+.
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhccc
Confidence 45799999854 223344 667666 89998764 589999987654
No 69
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.48 E-value=1.6 Score=40.78 Aligned_cols=145 Identities=10% Similarity=-0.155 Sum_probs=84.0
Q ss_pred cceeeeecceeEEEEEEeCCCCccccchhheeccccEeeEEEeCCCeEEEEeCCCCcccceeeeeeeEeecCcccccccc
Q 023757 8 SRVSINSRSWTERHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGT 87 (277)
Q Consensus 8 ~~~~~~~~~~~~eh~~~~~~~~~W~~~~~~~~~~~~~vPf~L~d~~~~V~V~~~~~a~~~~l~~v~~~f~~~~~~~~~~~ 87 (277)
+..+++ .++...|..+-...|.|.....++.+... |.++++.......-.+.........--..+........+.+
T Consensus 93 ~~~~~~-~~~~~~~~~k~~~~~~~~~~~~l~~q~~~---~~~~~~~s~~~~~~~l~l~~~~d~f~~s~p~s~~~~~~~~~ 168 (355)
T KOG1571|consen 93 PKGRRD-GGGHWNANSKIFHEGGNEVPFFLRSQTTG---FACEVRVSKTLGRLFLPLNVVYDLFEPSDPCSLVDVGGGYH 168 (355)
T ss_pred ceeeec-cceeeccceeeccCCCcccceeeccCCcc---eeeeeeeecceeeeeecceeeeccccccCcceeeecccccc
Confidence 445555 78888898888899999999888888888 88876644433333333333222222222222211111111
Q ss_pred c----------------------------cccccee----eeeeeeeecccCCCceEEEEEEEEeCCCCCeEEeCCCCCC
Q 023757 88 L----------------------------DYLQGLK----MLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGP 135 (277)
Q Consensus 88 ~----------------------------~~~~g~~----~~G~~~~E~vL~~G~~lt~vGe~~~d~~g~~~iq~P~~g~ 135 (277)
. +...|++ +.|-.+.+... .++-|+-+|-+..- .+-..+--...++
T Consensus 169 sg~~~~~~~~~~~~l~~~~~~t~l~e~v~d~~~~~r~~~~~~g~~~v~~s~-~d~LIsr~g~~s~~-~kv~~~~~~~~~~ 246 (355)
T KOG1571|consen 169 SGVRRGGFRETERVLPLGTRLTALGELVRDGYCGVRVQPPMQGPLYVTKSA-ADRLISREGDLSFF-VKVNGMVFGTLGV 246 (355)
T ss_pred cceeeecccceEEeeccccceeeeehheecCCCceEecCCccCcceeeccc-hhhHHHhhccceee-eeecceeeeeeeE
Confidence 1 1212222 55666666666 66667777766443 2333344444568
Q ss_pred eEEecCChHHHHHHhhhhHHHHH
Q 023757 136 FYVSPKTIDELLENLGKWARWYK 158 (277)
Q Consensus 136 f~ls~~s~~~Ll~~l~s~~r~~~ 158 (277)
|+||...+|..+++.....+..+
T Consensus 247 ills~~~~d~~led~r~~r~~l~ 269 (355)
T KOG1571|consen 247 ILLSFIVKDNYLEDDRRQRRELV 269 (355)
T ss_pred EeehHHHHHHHHHHHHHHHHHHH
Confidence 99998888999987666655543
No 70
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=82.38 E-value=0.83 Score=43.07 Aligned_cols=17 Identities=18% Similarity=0.528 Sum_probs=13.3
Q ss_pred ccccccccccccceEEe
Q 023757 227 PDLCVICLEQEYNAVFF 243 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~ 243 (277)
.+.|.-|+..+.++.+.
T Consensus 271 ~e~CigC~~~~~~vkl~ 287 (358)
T PF10272_consen 271 LEPCIGCMQAQPNVKLV 287 (358)
T ss_pred cCCccccccCCCCcEEE
Confidence 45799999888887775
No 71
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.30 E-value=0.36 Score=50.27 Aligned_cols=39 Identities=31% Similarity=0.742 Sum_probs=27.5
Q ss_pred ccccccccc---------ccceEEecCCCcccCccchhcC------CCCcccccccc
Q 023757 228 DLCVICLEQ---------EYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 228 ~~C~iC~~~---------~~~~~~~pCgH~~~C~~C~~~l------~~CPiCR~~i~ 269 (277)
..|+||+.- .+.+. -|.|-+ ...|.-+. .+||+||..|+
T Consensus 1470 eECaICYsvL~~vdr~lPskrC~--TCknKF-H~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1470 EECAICYSVLDMVDRSLPSKRCA--TCKNKF-HTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred chhhHHHHHHHHHhccCCccccc--hhhhhh-hHHHHHHHHHhcCCCCCCccccccc
Confidence 379999961 12232 478887 67887552 69999998876
No 72
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.56 E-value=0.53 Score=47.11 Aligned_cols=38 Identities=42% Similarity=0.894 Sum_probs=30.6
Q ss_pred cccccccc----cccceEEecCCCcccCccchhcC--CCCcccccc
Q 023757 228 DLCVICLE----QEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRR 267 (277)
Q Consensus 228 ~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~l--~~CPiCR~~ 267 (277)
..|.||+. .....+++-|||.. |..|...+ ..|| |...
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~scp-~~~D 55 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNASCP-TKRD 55 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhccCC-CCcc
Confidence 47999965 44568889999998 99999987 6899 6644
No 73
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=79.51 E-value=0.3 Score=45.08 Aligned_cols=46 Identities=24% Similarity=0.444 Sum_probs=36.7
Q ss_pred ccccccccccccceEE-ecCCCcccCccchhc----CCCCccccccccceee
Q 023757 227 PDLCVICLEQEYNAVF-FPCGHLCCCLICSSR----LTNCPLCRRRIDQVVR 273 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~----l~~CPiCR~~i~~~~~ 273 (277)
...|.+|-.--.++.. ..|-|.| |..|+.. ...||.|...|-...+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCccc
Confidence 3589999887766543 5899999 9999976 3799999998887643
No 74
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=78.63 E-value=0.96 Score=41.64 Aligned_cols=44 Identities=27% Similarity=0.685 Sum_probs=28.5
Q ss_pred cccccccccc-------------------cccceEEecCCCcccCccchh-----cC--------CCCccccccccc
Q 023757 226 MPDLCVICLE-------------------QEYNAVFFPCGHLCCCLICSS-----RL--------TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~-----~l--------~~CPiCR~~i~~ 270 (277)
.+..|++|+. .+-.-.|-||||+|. ..=.. .+ ..||.|-+..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~s-ekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCS-EKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccc-hhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 3568999986 233456779999973 11110 01 479999988765
No 75
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=78.54 E-value=6.4 Score=30.98 Aligned_cols=40 Identities=23% Similarity=0.552 Sum_probs=26.0
Q ss_pred ccccccccccc-----cceEEecCCCcccCccchhcCC-----CCcccccc
Q 023757 227 PDLCVICLEQE-----YNAVFFPCGHLCCCLICSSRLT-----NCPLCRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~l~-----~CPiCR~~ 267 (277)
...|.+|.... ...+-..|+|.+ |..|....+ .|.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 45899998642 335556788887 888876531 68888753
No 76
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=77.35 E-value=0.79 Score=30.48 Aligned_cols=38 Identities=32% Similarity=0.855 Sum_probs=15.8
Q ss_pred cccccccc--cceEEe--cCCCcccCccchhcC-----CCCccccccc
Q 023757 230 CVICLEQE--YNAVFF--PCGHLCCCLICSSRL-----TNCPLCRRRI 268 (277)
Q Consensus 230 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~l-----~~CPiCR~~i 268 (277)
|++|.+.- +..-|. +||+.. |..|.... ..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 44555432 233445 566776 99997664 4899999863
No 77
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.77 E-value=1 Score=29.76 Aligned_cols=42 Identities=21% Similarity=0.657 Sum_probs=23.8
Q ss_pred ccccccccccceEEecCCCcccCccchhcC----CCCcccccccccee
Q 023757 229 LCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 229 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
.|.-|.-..+..+ .|.--++|-.|...| ..||+|..++...+
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 5777876666655 588666799999876 58999999877644
No 78
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=74.61 E-value=1.5 Score=30.20 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=23.9
Q ss_pred cccccccccccccceEEe-cCCCcccCccchhcC------CCCcc
Q 023757 226 MPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPL 263 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l------~~CPi 263 (277)
....|+|.+....+++.- .|||.+ ..+.+..+ ..||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 356899999999998874 999999 67776653 47998
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=69.15 E-value=1.6 Score=39.94 Aligned_cols=39 Identities=31% Similarity=0.603 Sum_probs=31.4
Q ss_pred ccccccccccccceEEe-cCCCcccCccchhcC-----CCCccccc
Q 023757 227 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL-----TNCPLCRR 266 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l-----~~CPiCR~ 266 (277)
...|..|..--++.+-. -|||.+ |.+|+... ..||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 35899998877777766 578888 99999852 58999987
No 80
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=68.44 E-value=1.2 Score=40.58 Aligned_cols=47 Identities=30% Similarity=0.618 Sum_probs=34.8
Q ss_pred ccccccccc----ccceEEecCCCcccCccchhcC----CCCccccccccceeeccc
Q 023757 228 DLCVICLEQ----EYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 276 (277)
Q Consensus 228 ~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~f~ 276 (277)
..|++|.+. ...+..++|||.-. ..|.... -+||+|.. +.....+|+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~~~~~ 213 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMSHYFR 213 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHHHHHH
Confidence 359999873 35677889999984 7887764 48999999 666555543
No 81
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=67.85 E-value=36 Score=23.36 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023757 158 KYASFGLTIFGAFLIAKRVIRCILQRKRRW 187 (277)
Q Consensus 158 ~~~si~~~~vGv~ll~~~~~r~~~~~r~~~ 187 (277)
-+..+++++.|..++++..+.++...|+++
T Consensus 18 V~~Lig~T~~~g~~~~~~~y~~~~~~r~~~ 47 (59)
T PF14880_consen 18 VLGLIGFTVYGGGLTVYTVYSYFKYNRRRR 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777775544443
No 82
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.20 E-value=1.4 Score=44.67 Aligned_cols=42 Identities=31% Similarity=0.788 Sum_probs=36.1
Q ss_pred cccccccccccceEEecCCCcccCccchhcC-------CCCccccccccc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i~~ 270 (277)
..|.||.....+.+.+.|.|.+ |..|.... ..||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 3799999999888999999999 89998764 489999977764
No 83
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=67.01 E-value=1.1 Score=40.93 Aligned_cols=42 Identities=36% Similarity=0.744 Sum_probs=30.1
Q ss_pred ccccccccccc---ceEEecCCCcccCccchhcC---------------------------CCCccccccccc
Q 023757 228 DLCVICLEQEY---NAVFFPCGHLCCCLICSSRL---------------------------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~l---------------------------~~CPiCR~~i~~ 270 (277)
..|+||+-... ..+..+|-|.+. ..|.... ..||+||.+|..
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~H-~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYMH-FACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 47888886443 367789999984 4776540 269999988863
No 84
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=66.15 E-value=2.8 Score=38.68 Aligned_cols=48 Identities=13% Similarity=0.264 Sum_probs=39.0
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccceee
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQVVR 273 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~~~~ 273 (277)
..-.|++|+.+..-+...+|+|-..|..|.... ..||+|-..+.+...
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~ 187 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQ 187 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhc
Confidence 345899999999999999999999999996553 469999877665443
No 85
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=65.84 E-value=1.7 Score=31.05 Aligned_cols=42 Identities=29% Similarity=0.592 Sum_probs=17.5
Q ss_pred ccccccccccc----ceEEe----cCCCcccCccchhcC---------------CCCccccccccc
Q 023757 228 DLCVICLEQEY----NAVFF----PCGHLCCCLICSSRL---------------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~----~~~~~----pCgH~~~C~~C~~~l---------------~~CPiCR~~i~~ 270 (277)
..|.||++..- ...++ .|++.+ -..|.... .+||.|+.+|.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 47999997532 12221 566665 56776541 269999999864
No 86
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.23 E-value=10 Score=30.82 Aligned_cols=39 Identities=36% Similarity=0.850 Sum_probs=23.5
Q ss_pred ccccccccccccceEEecCCCcc------cCccchhcC--------CCCccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLC------CCLICSSRL--------TNCPLCRRRI 268 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~------~C~~C~~~l--------~~CPiCR~~i 268 (277)
+..|-||+... ..=-|||.| +|..|.-.. -.|-.|+...
T Consensus 65 datC~IC~KTK---FADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKTK---FADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhcc---cccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 45899999532 112689986 355554432 2577777543
No 87
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=63.62 E-value=2.1 Score=34.74 Aligned_cols=30 Identities=30% Similarity=0.686 Sum_probs=23.7
Q ss_pred cccccccccccc---eEEecCC------CcccCccchhcC
Q 023757 228 DLCVICLEQEYN---AVFFPCG------HLCCCLICSSRL 258 (277)
Q Consensus 228 ~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~l 258 (277)
..|.||+++-.+ +|.++|| |++ |.+|..+.
T Consensus 27 ~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw 65 (134)
T PF05883_consen 27 VECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRW 65 (134)
T ss_pred eeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHH
Confidence 479999986544 7778998 666 99998764
No 88
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=62.53 E-value=3.3 Score=30.51 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=28.2
Q ss_pred ccccccc---cccc--eEEecCCCcccCccchhcC----CCCcccccccc
Q 023757 229 LCVICLE---QEYN--AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 229 ~C~iC~~---~~~~--~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
.|+-|.. ...+ ++.--|.|.| -..|+.+- ..||+||+...
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 5666665 2222 3445899999 78998773 58999999764
No 89
>PLN02189 cellulose synthase
Probab=61.10 E-value=4.8 Score=42.88 Aligned_cols=44 Identities=27% Similarity=0.733 Sum_probs=30.7
Q ss_pred cccccccccc----ccceEEecCCC--cccCccchhc-----CCCCccccccccc
Q 023757 227 PDLCVICLEQ----EYNAVFFPCGH--LCCCLICSSR-----LTNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~----~~~~~~~pCgH--~~~C~~C~~~-----l~~CPiCR~~i~~ 270 (277)
...|.||-+. ...-.|+.|.- ...|..|+.- .+.||.|++...+
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 4489999986 33346677752 2259999853 3689999987663
No 90
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=60.75 E-value=59 Score=24.37 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023757 165 TIFGAFLIAKRVIRCILQRKR 185 (277)
Q Consensus 165 ~~vGv~ll~~~~~r~~~~~r~ 185 (277)
+.+.+.++++..++..+.+++
T Consensus 11 ~~v~~~i~~y~~~k~~ka~~~ 31 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKAKKQ 31 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555544444
No 91
>PHA03096 p28-like protein; Provisional
Probab=59.69 E-value=2.6 Score=38.58 Aligned_cols=40 Identities=23% Similarity=0.392 Sum_probs=28.8
Q ss_pred cccccccccc--------cceEEecCCCcccCccchhcC----------CCCccccccc
Q 023757 228 DLCVICLEQE--------YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRI 268 (277)
Q Consensus 228 ~~C~iC~~~~--------~~~~~~pCgH~~~C~~C~~~l----------~~CPiCR~~i 268 (277)
..|-||+++. +..++-.|.|.+ |-.|.... +.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence 4799999844 345667999999 99998752 4566666544
No 92
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.81 E-value=4.3 Score=36.95 Aligned_cols=30 Identities=33% Similarity=0.790 Sum_probs=26.1
Q ss_pred ccccccccccccceEEecCC----CcccCccchhc
Q 023757 227 PDLCVICLEQEYNAVFFPCG----HLCCCLICSSR 257 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~ 257 (277)
..-|.+|.++-.+.-|+-|- |-| |+.|+..
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRe 301 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRE 301 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccce-ecccCHH
Confidence 35799999999999999996 887 9999875
No 93
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=57.21 E-value=30 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023757 164 LTIFGAFLIAKRVIRCILQRK 184 (277)
Q Consensus 164 ~~~vGv~ll~~~~~r~~~~~r 184 (277)
.+++|+++++..++|.|+.|+
T Consensus 17 Vglv~i~iva~~iYRKw~aRk 37 (43)
T PF08114_consen 17 VGLVGIGIVALFIYRKWQARK 37 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777775544
No 94
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=56.34 E-value=1.5 Score=32.02 Aligned_cols=40 Identities=23% Similarity=0.467 Sum_probs=25.6
Q ss_pred ccccccccccceEE--ecCCCcccCccchhcC-------CCCcccccccc
Q 023757 229 LCVICLEQEYNAVF--FPCGHLCCCLICSSRL-------TNCPLCRRRID 269 (277)
Q Consensus 229 ~C~iC~~~~~~~~~--~pCgH~~~C~~C~~~l-------~~CPiCR~~i~ 269 (277)
.|+-|....-++-+ --|.|.+ -..|+.+- ..||+||+...
T Consensus 33 ~Cp~Ck~PgDdCPLv~G~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 33 CCPDCKLPGDDCPLVWGYCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred cCCCCcCCCCCCccHHHHHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 45555544444322 2788888 67888652 48999998753
No 95
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.32 E-value=69 Score=22.02 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023757 177 IRCILQRKRRWELRRRVLAAAA 198 (277)
Q Consensus 177 ~r~~~~~r~~~~~~~~~~~~~~ 198 (277)
..+++.+++.+++++++++.++
T Consensus 41 ~~~~~~r~~~~~~~k~l~~le~ 62 (68)
T PF06305_consen 41 PSRLRLRRRIRRLRKELKKLEK 62 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666665655544
No 96
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.67 E-value=4.1 Score=42.30 Aligned_cols=47 Identities=26% Similarity=0.456 Sum_probs=34.1
Q ss_pred cccccccccccc-eEEecCCCcccCccchhc-CCCCccccccccceeecc
Q 023757 228 DLCVICLEQEYN-AVFFPCGHLCCCLICSSR-LTNCPLCRRRIDQVVRTF 275 (277)
Q Consensus 228 ~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~-l~~CPiCR~~i~~~~~~f 275 (277)
..|..|-..-.- .|...|||.+ ...|... ...||-|+....++++.+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e~~~~~CP~C~~e~~~~m~l~ 889 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLEDKEDKCPKCLPELRGVMDLK 889 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhccCcccCCccchhhhhhHHHH
Confidence 479999765433 4556899999 6888874 479999998666555443
No 97
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.76 E-value=9.9 Score=34.12 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=31.0
Q ss_pred cccccccccc----ccccceEEecCCCcccCccchhcC--CCCccccccccc
Q 023757 225 VMPDLCVICL----EQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~----~~~~~~~~~pCgH~~~C~~C~~~l--~~CPiCR~~i~~ 270 (277)
.....|+|=- +..+-+++++|||++. ..=.... ..|++|.+....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~S-erAlKeikas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFS-ERALKEIKASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceecc-HHHHHHhhhccccccCCcccc
Confidence 3456888854 3556788899999982 2222233 589999988764
No 98
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.06 E-value=9.8 Score=23.18 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=10.4
Q ss_pred CCCcccccccccee
Q 023757 259 TNCPLCRRRIDQVV 272 (277)
Q Consensus 259 ~~CPiCR~~i~~~~ 272 (277)
..||+|..+-..+.
T Consensus 19 ~~CP~Cg~~~~~F~ 32 (34)
T cd00729 19 EKCPICGAPKEKFE 32 (34)
T ss_pred CcCcCCCCchHHcE
Confidence 58999998765544
No 99
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=49.78 E-value=19 Score=34.39 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=32.7
Q ss_pred cccccccccc----cccceEEecCCCcccCccchhcC------CCCcccccccc
Q 023757 226 MPDLCVICLE----QEYNAVFFPCGHLCCCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 226 ~~~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~l------~~CPiCR~~i~ 269 (277)
.+-.|-.|-+ ++.+.-.+||-|.+ -..|.... ..||-||.-+.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3457888876 45566778999999 78998852 68999995444
No 100
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.78 E-value=5.7 Score=36.33 Aligned_cols=10 Identities=40% Similarity=1.308 Sum_probs=8.3
Q ss_pred CCCccccccc
Q 023757 259 TNCPLCRRRI 268 (277)
Q Consensus 259 ~~CPiCR~~i 268 (277)
.+||.||+.+
T Consensus 355 ~~cp~cr~~f 364 (381)
T KOG3899|consen 355 AQCPTCRKNF 364 (381)
T ss_pred CCCcchhhce
Confidence 4899999865
No 101
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=43.49 E-value=28 Score=30.53 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=25.8
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhHHHHHHHHhHHHH
Q 023757 130 RPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTI 166 (277)
Q Consensus 130 ~P~~g~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~ 166 (277)
++.+.||+-....+++.+.......+.|++++++.++
T Consensus 14 ~~~~~~y~~a~~~weer~~~~~~~~~~w~~va~~~l~ 50 (228)
T PRK13872 14 PEPETPYQRAAQVWDERIGSARVQARNWRLMAFGCLA 50 (228)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688888888888888888888767644543333
No 102
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=43.28 E-value=15 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.571 Sum_probs=19.8
Q ss_pred cceEEecCCCccc--Cccchhc----CCCCcccccc
Q 023757 238 YNAVFFPCGHLCC--CLICSSR----LTNCPLCRRR 267 (277)
Q Consensus 238 ~~~~~~pCgH~~~--C~~C~~~----l~~CPiCR~~ 267 (277)
.-.+++.|||+-- =+.|... -..||+||..
T Consensus 315 QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 315 QPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCeEEEeccccccccccccccccCcccCcCCeeeee
Confidence 4578899999852 2333332 2689999963
No 103
>PRK13836 conjugal transfer protein TrbF; Provisional
Probab=42.23 E-value=30 Score=30.21 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.0
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhHHHHHHHHhHHHHH
Q 023757 130 RPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIF 167 (277)
Q Consensus 130 ~P~~g~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~v 167 (277)
++...||+-....+++.+.....+++.|++++++.+++
T Consensus 5 ~~~~~py~~a~~~w~er~g~~~~~~~~W~~~a~~~l~~ 42 (220)
T PRK13836 5 TPPDNPYLAARQEWNERYGSYVKAAAAWRIVGILGLTM 42 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445888888889999999888889998887644443
No 104
>PF10176 DUF2370: Protein of unknown function (DUF2370); InterPro: IPR019325 Proteins in this family are conserved from fungi to humans. They include the human NEDD4 family-interacting proteins and the yeast BSD2 metal homeostatis proteins.
Probab=41.74 E-value=48 Score=29.50 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023757 158 KYASFGLTIFGAFLIAKRVIRCILQRKRRW 187 (277)
Q Consensus 158 ~~~si~~~~vGv~ll~~~~~r~~~~~r~~~ 187 (277)
.|++.++.++|.+++.+.++.|++-+|.++
T Consensus 194 ~wla~~Lm~~G~fI~irsi~dY~rVKR~Er 223 (233)
T PF10176_consen 194 PWLAYILMAFGWFIFIRSIIDYWRVKRMER 223 (233)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888899999999999996655443
No 105
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=41.47 E-value=16 Score=21.91 Aligned_cols=14 Identities=29% Similarity=0.631 Sum_probs=10.2
Q ss_pred CCCcccccccccee
Q 023757 259 TNCPLCRRRIDQVV 272 (277)
Q Consensus 259 ~~CPiCR~~i~~~~ 272 (277)
..||+|..+-..+.
T Consensus 18 ~~CP~Cg~~~~~F~ 31 (33)
T cd00350 18 WVCPVCGAPKDKFE 31 (33)
T ss_pred CcCcCCCCcHHHcE
Confidence 48999988765544
No 106
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=40.67 E-value=5.7 Score=22.72 Aligned_cols=10 Identities=40% Similarity=1.268 Sum_probs=7.7
Q ss_pred CCCccccccc
Q 023757 259 TNCPLCRRRI 268 (277)
Q Consensus 259 ~~CPiCR~~i 268 (277)
..||+|.+.+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3689998876
No 107
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=39.48 E-value=11 Score=25.30 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=3.4
Q ss_pred CCcccccccc
Q 023757 260 NCPLCRRRID 269 (277)
Q Consensus 260 ~CPiCR~~i~ 269 (277)
.||+|.++++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 4666665554
No 108
>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha
Probab=39.20 E-value=56 Score=22.08 Aligned_cols=30 Identities=30% Similarity=0.548 Sum_probs=24.3
Q ss_pred eecccCCCceEEEEEEEEeCCCCCeEEeCCC
Q 023757 102 IGRLLPTGTSLTVVGEAVKDDIGTVRIQRPH 132 (277)
Q Consensus 102 ~E~vL~~G~~lt~vGe~~~d~~g~~~iq~P~ 132 (277)
....+++|+.+.+.|.+..- .|.+.|..|.
T Consensus 42 ~~~~~~~G~~~~v~Gkv~~~-~~~~qi~~P~ 71 (75)
T cd04488 42 LKKQLPPGTRVRVSGKVKRF-RGGLQIVHPE 71 (75)
T ss_pred HHhcCCCCCEEEEEEEEeec-CCeeEEeCCc
Confidence 34569999999999997654 6788898886
No 109
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.91 E-value=8.8 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.654 Sum_probs=17.4
Q ss_pred ccccccccccceEEecCCCcccCccchhcC---CCCccccccccce
Q 023757 229 LCVICLEQEYNAVFFPCGHLCCCLICSSRL---TNCPLCRRRIDQV 271 (277)
Q Consensus 229 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l---~~CPiCR~~i~~~ 271 (277)
.|+.|...- -+.=||.. |..|.... ..||-|.++++.+
T Consensus 3 ~CP~C~~~L----~~~~~~~~-C~~C~~~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 3 TCPKCQQEL----EWQGGHYH-CEACQKDYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp B-SSS-SBE----EEETTEEE-ETTT--EEEEEEE-TTT-SB-EEE
T ss_pred cCCCCCCcc----EEeCCEEE-CccccccceecccCCCcccHHHHH
Confidence 577887541 11114444 77777664 5788888776643
No 110
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=38.25 E-value=4.1 Score=30.87 Aligned_cols=36 Identities=25% Similarity=0.731 Sum_probs=28.3
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCcccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~ 267 (277)
+..|..|......-.+ |.. |..|+..+..|+-|..+
T Consensus 55 p~kC~~C~qktVk~AY----h~i-C~~Ca~~~~vCaKC~k~ 90 (92)
T PF10217_consen 55 PKKCNKCQQKTVKHAY----HVI-CDPCAKELKVCAKCGKP 90 (92)
T ss_pred CccccccccchHHHHH----HHH-HHHHHHhhccCcccCCC
Confidence 4589999976655444 555 99999999999999765
No 111
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.89 E-value=16 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=13.2
Q ss_pred HHHHhhhhHHHHHHHHhHHHHHHHHHHH
Q 023757 146 LLENLGKWARWYKYASFGLTIFGAFLIA 173 (277)
Q Consensus 146 Ll~~l~s~~r~~~~~si~~~~vGv~ll~ 173 (277)
+..++..-+-.+-.+++++|++|++++.
T Consensus 57 l~h~fs~~~i~~Ii~gv~aGvIg~Illi 84 (122)
T PF01102_consen 57 LVHRFSEPAIIGIIFGVMAGVIGIILLI 84 (122)
T ss_dssp SSSSSS-TCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccccceeehhHHHHHHHHHHHHHH
Confidence 3444444454444555555555555443
No 112
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.69 E-value=13 Score=35.39 Aligned_cols=40 Identities=28% Similarity=0.547 Sum_probs=28.7
Q ss_pred ccccccccccc---ceEEecCCCcccCccchhcC-------CCCccccccc
Q 023757 228 DLCVICLEQEY---NAVFFPCGHLCCCLICSSRL-------TNCPLCRRRI 268 (277)
Q Consensus 228 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i 268 (277)
..|+|=.+... -+.-+.|||+. |.+=..++ -+||-|-...
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred eecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCccc
Confidence 48999665432 26778999998 77777665 2799998654
No 113
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=37.48 E-value=15 Score=24.99 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=11.0
Q ss_pred CCCccccccccce
Q 023757 259 TNCPLCRRRIDQV 271 (277)
Q Consensus 259 ~~CPiCR~~i~~~ 271 (277)
..|.+|+++|...
T Consensus 2 ~~CvVCKqpi~~a 14 (54)
T PF10886_consen 2 EICVVCKQPIDDA 14 (54)
T ss_pred CeeeeeCCccCcc
Confidence 5799999999875
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.24 E-value=20 Score=33.38 Aligned_cols=46 Identities=35% Similarity=0.846 Sum_probs=33.0
Q ss_pred ccccccccccc----cceEEecCCCcccCccchhcC----CCCccccccccceee
Q 023757 227 PDLCVICLEQE----YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 273 (277)
Q Consensus 227 ~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~ 273 (277)
+..|++|.+.. .+.+=.||||. .|..|.... ..||.||.+...-..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t~ 302 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNTK 302 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCcc
Confidence 36899999833 33333478888 499998875 589999977765433
No 115
>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32). RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam
Probab=37.04 E-value=1.5e+02 Score=21.58 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=18.1
Q ss_pred ecccCCCceEEEEEEEEeCCCCCeEEe
Q 023757 103 GRLLPTGTSLTVVGEAVKDDIGTVRIQ 129 (277)
Q Consensus 103 E~vL~~G~~lt~vGe~~~d~~g~~~iq 129 (277)
...+++|+.+-+.|.+..- +|.+.|.
T Consensus 45 ~~~~~~g~~v~v~G~v~~~-~g~~ql~ 70 (95)
T cd04478 45 VEPIEEGTYVRVFGNLKSF-QGKKSIM 70 (95)
T ss_pred ccccccCCEEEEEEEEccc-CCeeEEE
Confidence 4568899999999997543 4554443
No 116
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=36.41 E-value=11 Score=33.32 Aligned_cols=19 Identities=32% Similarity=1.022 Sum_probs=15.7
Q ss_pred cCccchhcC----CCCccccccc
Q 023757 250 CCLICSSRL----TNCPLCRRRI 268 (277)
Q Consensus 250 ~C~~C~~~l----~~CPiCR~~i 268 (277)
.|.+|.+.. +.||+|++.-
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred hhHhHHHHHhcCCCCCccccccc
Confidence 599998875 7999999754
No 117
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=36.40 E-value=14 Score=38.45 Aligned_cols=47 Identities=19% Similarity=0.405 Sum_probs=32.7
Q ss_pred CCccccccccccc--cccceEEecCCCcc----cCccchhcC------CCCcccccccc
Q 023757 223 DRVMPDLCVICLE--QEYNAVFFPCGHLC----CCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 223 ~~~~~~~C~iC~~--~~~~~~~~pCgH~~----~C~~C~~~l------~~CPiCR~~i~ 269 (277)
..+++..|-||.. .+.+..|.||...- ...+|.... ++|-+|..++.
T Consensus 8 mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred CCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 3344568999986 45679999998543 245666542 58999998764
No 118
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=36.33 E-value=11 Score=38.95 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=28.6
Q ss_pred ccccccccc----cceEEecCCCcccCccchhcC----------CCCcccccccccee
Q 023757 229 LCVICLEQE----YNAVFFPCGHLCCCLICSSRL----------TNCPLCRRRIDQVV 272 (277)
Q Consensus 229 ~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~l----------~~CPiCR~~i~~~~ 272 (277)
.|.+|+..+ ..+.+-.|+|.. |..|+... ..|+.|..-|...-
T Consensus 101 ~C~~E~S~~~ds~~i~P~~~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWs 157 (1134)
T KOG0825|consen 101 VCEKEHSPDVDSSNICPVQTHVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGSWS 157 (1134)
T ss_pred hhheecCCcccccCcCchhhhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhhhh
Confidence 566666652 223333499999 99998762 47899987666543
No 119
>PRK11677 hypothetical protein; Provisional
Probab=35.16 E-value=88 Score=25.36 Aligned_cols=8 Identities=25% Similarity=0.360 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 023757 172 IAKRVIRC 179 (277)
Q Consensus 172 l~~~~~r~ 179 (277)
+++.+.|+
T Consensus 16 iG~~~~R~ 23 (134)
T PRK11677 16 IGAVAMRF 23 (134)
T ss_pred HHHHHHhh
Confidence 33444443
No 120
>PHA02610 uvsY.-2 hypothetical protein; Provisional
Probab=34.87 E-value=16 Score=24.56 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=11.2
Q ss_pred CCCcccccccccee
Q 023757 259 TNCPLCRRRIDQVV 272 (277)
Q Consensus 259 ~~CPiCR~~i~~~~ 272 (277)
+.|++|+++|....
T Consensus 2 ~iCvvCK~Pi~~al 15 (53)
T PHA02610 2 KICVVCKQPIEKAL 15 (53)
T ss_pred ceeeeeCCchhhce
Confidence 46999999997754
No 121
>PF09835 DUF2062: Uncharacterized protein conserved in bacteria (DUF2062); InterPro: IPR018639 This domain, found in various prokaryotic proteins, has no known function. It is found at the C-terminal of family 2 glycosyltransferase proteins, in addition to proteins of unknown function.
Probab=34.46 E-value=1.8e+02 Score=23.49 Aligned_cols=28 Identities=25% Similarity=0.193 Sum_probs=14.8
Q ss_pred CChHHHHHHhhhhHHHHHHHHhHHHHHH
Q 023757 141 KTIDELLENLGKWARWYKYASFGLTIFG 168 (277)
Q Consensus 141 ~s~~~Ll~~l~s~~r~~~~~si~~~~vG 168 (277)
.+..+++..+.....-+.+.+++.+++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~G~~i~~~v~ 131 (154)
T PF09835_consen 104 MHWSDLLESLWEFGLPFLLGSLILGIVL 131 (154)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455655555555545545555555543
No 122
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=34.14 E-value=1.4e+02 Score=22.38 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=26.5
Q ss_pred eEEeCCCCCCeEEecCChHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 023757 126 VRIQRPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIRCILQRK 184 (277)
Q Consensus 126 ~~iq~P~~g~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~vGv~ll~~~~~r~~~~~r 184 (277)
+.+++|+.| ...+.=+.++...... ..+.++++++.+.+.+.+.++.-|.+-|
T Consensus 2 P~~e~Ps~g----~~~~~~~~i~~y~~d~--~~l~gLv~~a~afi~Va~~~i~~y~eir 54 (87)
T PF11190_consen 2 PTVEPPSSG----GGGGIMETIKGYAKDG--VLLLGLVLAAAAFIVVAKAAISTYNEIR 54 (87)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788877 3334333333322211 1234444555555566666666665544
No 123
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=33.53 E-value=28 Score=31.65 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=22.2
Q ss_pred ccccccccccccceEEecC---C--CcccCccchhcC----CCCccccccccceee
Q 023757 227 PDLCVICLEQEYNAVFFPC---G--HLCCCLICSSRL----TNCPLCRRRIDQVVR 273 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pC---g--H~~~C~~C~~~l----~~CPiCR~~i~~~~~ 273 (277)
...|+||-+.+.-.++..= | |+. |.-|.... ..||.|-..-.....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~ 226 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLE 226 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCccee
Confidence 4699999999988877754 3 444 88887663 489999876554433
No 124
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=33.07 E-value=19 Score=33.84 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=12.3
Q ss_pred ccccccccccccccceE
Q 023757 225 VMPDLCVICLEQEYNAV 241 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~ 241 (277)
..+.+|++|-++..-.-
T Consensus 13 dl~ElCPVCGDkVSGYH 29 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYH 29 (475)
T ss_pred ccccccccccCccccce
Confidence 34569999999876543
No 125
>PF12120 Arr-ms: Rifampin ADP-ribosyl transferase; InterPro: IPR021975 This domain is part of the beta subunit of bacterial DNA dependent RNA polymerase. This domain is the binding site for the antibacterial drug rifampin (and its analogues) which blocks the DNA/RNA tunnel and prevents initiation of transcription. ; PDB: 2HW2_A.
Probab=33.04 E-value=33 Score=26.10 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=25.3
Q ss_pred CCCeEEEEeCCCCcccceeeeeeeEeecCcccccccccccccceeeeeeeeeecccCCCceEEEEEEE
Q 023757 51 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 118 (277)
Q Consensus 51 d~~~~V~V~~~~~a~~~~l~~v~~~f~~~~~~~~~~~~~~~~g~~~~G~~~~E~vL~~G~~lt~vGe~ 118 (277)
|+.++|.|+.|......|-+++..+|.-. -+..|+..| +|-+|||+
T Consensus 52 ~g~~RiYiVEPtG~~EdDPNvTdkkfPGN---------------PTrSyRs~~-------PlrvvgEv 97 (100)
T PF12120_consen 52 EGRGRIYIVEPTGPFEDDPNVTDKKFPGN---------------PTRSYRSRE-------PLRVVGEV 97 (100)
T ss_dssp SS--EEEEEEESS--EE-GGGSSSSSSS----------------TT-EEEESS--------EEEEEEE
T ss_pred CCCCcEEEEccCCCcccCccccCCCCCCC---------------CcceeecCC-------CeEEEEEe
Confidence 55688999999998755666555555433 255566543 57788885
No 126
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=32.60 E-value=18 Score=27.27 Aligned_cols=34 Identities=29% Similarity=0.645 Sum_probs=24.1
Q ss_pred cccccccccccceEEecCCCcccCccchhcC--CCCccccc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL--TNCPLCRR 266 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l--~~CPiCR~ 266 (277)
..|+||-+-. -||.-+-.|.+|.-.. ..|.||..
T Consensus 28 gkC~ICDS~V-----RP~tlVRiC~eC~~Gs~q~~ciic~~ 63 (110)
T KOG1705|consen 28 GKCVICDSYV-----RPCTLVRICDECNYGSYQGRCVICGG 63 (110)
T ss_pred Cccccccccc-----ccceeeeeehhcCCccccCceEEecC
Confidence 4799996543 3666566799997653 68888876
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=32.54 E-value=67 Score=25.62 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH
Q 023757 159 YASFGLTIFGAFLIAKRVIRCILQR 183 (277)
Q Consensus 159 ~~si~~~~vGv~ll~~~~~r~~~~~ 183 (277)
+..|++|+++.+++...++-|+..|
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 5667777764444444555555443
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=32.35 E-value=22 Score=36.93 Aligned_cols=15 Identities=40% Similarity=0.871 Sum_probs=12.3
Q ss_pred cCCCcccCccchhcC
Q 023757 244 PCGHLCCCLICSSRL 258 (277)
Q Consensus 244 pCgH~~~C~~C~~~l 258 (277)
.|||+..|..|...+
T Consensus 440 ~Cg~v~~Cp~Cd~~l 454 (730)
T COG1198 440 DCGYIAECPNCDSPL 454 (730)
T ss_pred cCCCcccCCCCCcce
Confidence 788999999998763
No 129
>PRK00523 hypothetical protein; Provisional
Probab=32.06 E-value=1.7e+02 Score=21.20 Aligned_cols=27 Identities=11% Similarity=-0.066 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023757 156 WYKYASFGLTIFGAFLIAKRVIRCILQ 182 (277)
Q Consensus 156 ~~~~~si~~~~vGv~ll~~~~~r~~~~ 182 (277)
+|..+.++..++|++.-++..+++++.
T Consensus 6 l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 6 LALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555566777666666666643
No 130
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=31.90 E-value=56 Score=29.15 Aligned_cols=38 Identities=5% Similarity=0.121 Sum_probs=25.6
Q ss_pred CCCCCCeEEecCChHHHHHHhhhhHHHHHHHHhHHHHH
Q 023757 130 RPHKGPFYVSPKTIDELLENLGKWARWYKYASFGLTIF 167 (277)
Q Consensus 130 ~P~~g~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~v 167 (277)
++...||+-....+++.+......++.|++++++.+++
T Consensus 28 ~~~~~~Y~~a~~~we~r~~~~~~~~~~w~v~a~~~~~i 65 (250)
T PRK13887 28 GETENPYLNARRTWNDHVGGVVSQRQTWQVVGILSLLI 65 (250)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455888888888887777777777776655443333
No 131
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=31.76 E-value=23 Score=29.55 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=28.0
Q ss_pred cccccccccccccceEEecCCCcc----cCccchhcC------CCCcccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLC----CCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~----~C~~C~~~l------~~CPiCR~~i~ 269 (277)
.+..|-||++..... .-||.... .-.+|.... ..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~~-~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDVV-TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCCc-cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 356899999887543 34766432 234566542 58999998764
No 132
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.05 E-value=22 Score=30.00 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=16.3
Q ss_pred cCCCcccCccchhcCCCCcccccccccee
Q 023757 244 PCGHLCCCLICSSRLTNCPLCRRRIDQVV 272 (277)
Q Consensus 244 pCgH~~~C~~C~~~l~~CPiCR~~i~~~~ 272 (277)
-|||.+ .. ..-..||+|..+-..+.
T Consensus 139 vCGy~~--~g--e~P~~CPiCga~k~~F~ 163 (166)
T COG1592 139 VCGYTH--EG--EAPEVCPICGAPKEKFE 163 (166)
T ss_pred CCCCcc--cC--CCCCcCCCCCChHHHhh
Confidence 347775 33 44569999998765543
No 133
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=30.09 E-value=7.4 Score=26.23 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=3.3
Q ss_pred CCcccccccc
Q 023757 260 NCPLCRRRID 269 (277)
Q Consensus 260 ~CPiCR~~i~ 269 (277)
+||+|...|.
T Consensus 26 tCP~C~a~~~ 35 (54)
T PF09237_consen 26 TCPICGAVIR 35 (54)
T ss_dssp E-TTT--EES
T ss_pred CCCcchhhcc
Confidence 4555554443
No 134
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=29.61 E-value=2.6e+02 Score=29.34 Aligned_cols=13 Identities=31% Similarity=0.647 Sum_probs=10.1
Q ss_pred CCCccccccccce
Q 023757 259 TNCPLCRRRIDQV 271 (277)
Q Consensus 259 ~~CPiCR~~i~~~ 271 (277)
..||.|...+...
T Consensus 1175 ~~CPLCHs~~~~~ 1187 (1189)
T KOG2041|consen 1175 NCCPLCHSMESFR 1187 (1189)
T ss_pred ccCccccChhhcc
Confidence 5899999877543
No 135
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.04 E-value=25 Score=31.11 Aligned_cols=42 Identities=26% Similarity=0.548 Sum_probs=32.7
Q ss_pred cccccccc--cccceEEecCCCcccCccchhc----C--------CCCccccccccc
Q 023757 228 DLCVICLE--QEYNAVFFPCGHLCCCLICSSR----L--------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~--~~~~~~~~pCgH~~~C~~C~~~----l--------~~CPiCR~~i~~ 270 (277)
..|..|.. ...+.+-+-|-|++ -+.|... + -.||-|.+.|..
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 46888875 45677778999999 8999865 2 279999998764
No 136
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=28.81 E-value=35 Score=19.52 Aligned_cols=17 Identities=29% Similarity=0.868 Sum_probs=8.7
Q ss_pred CccchhcC----CCCcccccc
Q 023757 251 CLICSSRL----TNCPLCRRR 267 (277)
Q Consensus 251 C~~C~~~l----~~CPiCR~~ 267 (277)
|.+|...+ +.||.|.-.
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCC
Confidence 45555443 456666543
No 137
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=28.46 E-value=1.6e+02 Score=23.98 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=30.1
Q ss_pred eCCCCC-CeEEecCChHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 023757 129 QRPHKG-PFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIRC 179 (277)
Q Consensus 129 q~P~~g-~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~vGv~ll~~~~~r~ 179 (277)
+.|.+. +|--.+.+.+.++.++-++.+.. .+++|+.++-++.|+.+.-+.
T Consensus 7 ~~~~~~~~~~~g~pppq~~lqrlcs~~~l~-LlsLgl~~LLLV~IcVigsQ~ 57 (138)
T PF03954_consen 7 ENERREQQFRKGPPPPQSLLQRLCSGPRLL-LLSLGLSLLLLVVICVIGSQN 57 (138)
T ss_pred cCccccccccCCCCCChHHHHHHcccchHH-HHHHHHHHHHHHHHHhhcCcc
Confidence 444444 55555567788999999988665 555666554444444443333
No 138
>PRK01343 zinc-binding protein; Provisional
Probab=28.33 E-value=31 Score=23.78 Aligned_cols=11 Identities=27% Similarity=0.779 Sum_probs=6.8
Q ss_pred CCCcccccccc
Q 023757 259 TNCPLCRRRID 269 (277)
Q Consensus 259 ~~CPiCR~~i~ 269 (277)
..||+|+.++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 45677766654
No 139
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=28.11 E-value=14 Score=40.25 Aligned_cols=43 Identities=28% Similarity=0.665 Sum_probs=32.1
Q ss_pred cccccccccccc-ceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 227 PDLCVICLEQEY-NAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
...|.+|.+--+ ...+.-|||.. |..|.... ..||+|...+..
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhhhh
Confidence 458999999665 34445799999 66898764 689999965443
No 140
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=27.74 E-value=21 Score=26.19 Aligned_cols=43 Identities=28% Similarity=0.661 Sum_probs=15.6
Q ss_pred ccccccccccccc----eEEec---CCCcccCccchhc-----CCCCccccccccc
Q 023757 227 PDLCVICLEQEYN----AVFFP---CGHLCCCLICSSR-----LTNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~----~~~~p---CgH~~~C~~C~~~-----l~~CPiCR~~i~~ 270 (277)
...|.||-+.... -+|+- |+--+ |..|+.- .+.||.|+.+..+
T Consensus 9 ~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 9 GQICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp S-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CcccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 4589999874421 24443 44333 7788753 3789999977654
No 141
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=27.29 E-value=22 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.602 Sum_probs=20.6
Q ss_pred eEEecCCCcccCccchhcC----CCCcccccc
Q 023757 240 AVFFPCGHLCCCLICSSRL----TNCPLCRRR 267 (277)
Q Consensus 240 ~~~~pCgH~~~C~~C~~~l----~~CPiCR~~ 267 (277)
++--.|.|.| -..|+.+- ..||+|.+.
T Consensus 76 VaWG~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 76 VAWGVCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred EEeeecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 3445899999 68888763 589999865
No 142
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands. The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....
Probab=26.94 E-value=73 Score=21.68 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=37.7
Q ss_pred eccccEeeEEEeCCCeEEEEeCCCCcccceeeeeeeEeecCcccccccccccccceeeeeeeeeecccCCCceEEEEEEE
Q 023757 39 LSMSKEVPWYLDDGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEA 118 (277)
Q Consensus 39 ~~~~~~vPf~L~d~~~~V~V~~~~~a~~~~l~~v~~~f~~~~~~~~~~~~~~~~g~~~~G~~~~E~vL~~G~~lt~vGe~ 118 (277)
....+-+=|.|+|++|.+++.-.. ..+...-+.|++|+.+.+.|.+
T Consensus 12 ~~~~~~~~~~l~D~tg~i~~~~~~----------------------------------~~~~~~~~~l~~g~~v~v~G~v 57 (75)
T PF01336_consen 12 RSGGKIVFFTLEDGTGSIQVVFFN----------------------------------EEYERFREKLKEGDIVRVRGKV 57 (75)
T ss_dssp EEETTEEEEEEEETTEEEEEEEET----------------------------------HHHHHHHHTS-TTSEEEEEEEE
T ss_pred cCCCCEEEEEEEECCccEEEEEcc----------------------------------HHhhHHhhcCCCCeEEEEEEEE
Confidence 444555667788999887773222 0112233568899999999999
Q ss_pred EeCCCCCeEEeCC
Q 023757 119 VKDDIGTVRIQRP 131 (277)
Q Consensus 119 ~~d~~g~~~iq~P 131 (277)
...+++.+.|..+
T Consensus 58 ~~~~~~~~~l~~~ 70 (75)
T PF01336_consen 58 KRYNGGELELIVP 70 (75)
T ss_dssp EEETTSSEEEEEE
T ss_pred EEECCccEEEEEC
Confidence 8875555766544
No 143
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.67 E-value=19 Score=31.82 Aligned_cols=20 Identities=35% Similarity=1.067 Sum_probs=15.5
Q ss_pred cCccchhcC----CCCcccccccc
Q 023757 250 CCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 250 ~C~~C~~~l----~~CPiCR~~i~ 269 (277)
.|.+|-++. +.||+|+..-.
T Consensus 251 ~ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 251 VCLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHHhcCCCCCcchhhccc
Confidence 488888775 79999997543
No 144
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=25.56 E-value=29 Score=22.32 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=14.9
Q ss_pred cccCccchhcC--------CCCcccccccc
Q 023757 248 LCCCLICSSRL--------TNCPLCRRRID 269 (277)
Q Consensus 248 ~~~C~~C~~~l--------~~CPiCR~~i~ 269 (277)
.+.|..|-..+ ..||.|..++.
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~~~~ 32 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGYRIL 32 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCCeEE
Confidence 34567776542 48999998765
No 145
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.46 E-value=20 Score=34.77 Aligned_cols=30 Identities=30% Similarity=0.587 Sum_probs=25.7
Q ss_pred ccccccccccccc-eEEecCCCcccCccchhc
Q 023757 227 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSR 257 (277)
Q Consensus 227 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~ 257 (277)
...|-||.+.... ++.++|||.+ |..|...
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~ 100 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTG 100 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHH
Confidence 4589999998874 8888999999 9999876
No 146
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=17 Score=34.69 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=21.2
Q ss_pred ccccccccc-cc---cceEEecCCCcccCccchhc
Q 023757 227 PDLCVICLE-QE---YNAVFFPCGHLCCCLICSSR 257 (277)
Q Consensus 227 ~~~C~iC~~-~~---~~~~~~pCgH~~~C~~C~~~ 257 (277)
...|.||+. .+ .......|+|.+ |.+|...
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~ 179 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQ 179 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchh-hhHHhHH
Confidence 458999993 22 222245899999 9999875
No 147
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=24.96 E-value=25 Score=20.85 Aligned_cols=20 Identities=30% Similarity=0.785 Sum_probs=10.5
Q ss_pred CcccCccchhcC--------CCCcccccc
Q 023757 247 HLCCCLICSSRL--------TNCPLCRRR 267 (277)
Q Consensus 247 H~~~C~~C~~~l--------~~CPiCR~~ 267 (277)
|.+ |..|-..+ ..||.|...
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGHE 30 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-E
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcCE
Confidence 556 77777653 468888653
No 148
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=24.86 E-value=85 Score=20.50 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=14.4
Q ss_pred CeEEeCCCCC-CeEEecCChHHHHHHhhhh
Q 023757 125 TVRIQRPHKG-PFYVSPKTIDELLENLGKW 153 (277)
Q Consensus 125 ~~~iq~P~~g-~f~ls~~s~~~Ll~~l~s~ 153 (277)
.+.+++ .+| +|++|...-+.-++.+..|
T Consensus 7 ki~~~~-~~Gl~y~vT~~~s~~~L~k~~~w 35 (45)
T PF12123_consen 7 KIIFQS-KDGLPYFVTDPLSDAELDKFTAW 35 (45)
T ss_dssp EEEE-T--TS-EEEEE----HHHHHHHHHH
T ss_pred EEEEec-CCCcEEEEeCCCCHHHHHHHHHH
Confidence 344444 677 8999987767666665554
No 149
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.75 E-value=35 Score=22.94 Aligned_cols=21 Identities=38% Similarity=0.963 Sum_probs=12.5
Q ss_pred cCCCcccCccchhc----CCCCcccc
Q 023757 244 PCGHLCCCLICSSR----LTNCPLCR 265 (277)
Q Consensus 244 pCgH~~~C~~C~~~----l~~CPiCR 265 (277)
.|++.+ |.+|..- +-.||.|-
T Consensus 26 ~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCcc-ccCcChhhhccccCCcCCC
Confidence 577777 9999754 57999984
No 150
>PRK01844 hypothetical protein; Provisional
Probab=24.46 E-value=2.3e+02 Score=20.42 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=13.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q 023757 159 YASFGLTIFGAFLIAKRVIRCIL 181 (277)
Q Consensus 159 ~~si~~~~vGv~ll~~~~~r~~~ 181 (277)
.+.++..++|++.-++.++++++
T Consensus 8 ~l~I~~li~G~~~Gff~ark~~~ 30 (72)
T PRK01844 8 LVGVVALVAGVALGFFIARKYMM 30 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666664
No 151
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=24.28 E-value=2.6e+02 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=6.4
Q ss_pred CeEEecCChHHHHH
Q 023757 135 PFYVSPKTIDELLE 148 (277)
Q Consensus 135 ~f~ls~~s~~~Ll~ 148 (277)
+..+.+.+.+..+.
T Consensus 60 ~~~i~pL~e~~Aie 73 (134)
T PF07047_consen 60 PRKIRPLNEEKAIE 73 (134)
T ss_pred CCcCCCCCHHHHHH
Confidence 34445555444443
No 152
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.79 E-value=34 Score=18.87 Aligned_cols=18 Identities=28% Similarity=0.886 Sum_probs=10.0
Q ss_pred CccchhcC----CCCccccccc
Q 023757 251 CLICSSRL----TNCPLCRRRI 268 (277)
Q Consensus 251 C~~C~~~l----~~CPiCR~~i 268 (277)
|..|-..+ .-||.|..+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 45555443 4677776553
No 153
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.53 E-value=40 Score=25.43 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=27.9
Q ss_pred cccccccccccceEEecCCCcccCccchhcCCCCccccccccc
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~ 270 (277)
..|.+|-...-. =||-+ |..|+-....|.+|-..|..
T Consensus 45 ~~C~~CK~~v~q-----~g~~Y-Cq~CAYkkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKVHQ-----PGAKY-CQTCAYKKGICAMCGKKILD 81 (90)
T ss_pred cccccccccccc-----CCCcc-ChhhhcccCcccccCCeecc
Confidence 489999854322 25555 89999999999999998844
No 154
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.29 E-value=42 Score=33.23 Aligned_cols=14 Identities=36% Similarity=1.101 Sum_probs=9.2
Q ss_pred cCCCcccCccchhc
Q 023757 244 PCGHLCCCLICSSR 257 (277)
Q Consensus 244 pCgH~~~C~~C~~~ 257 (277)
.|||...|..|...
T Consensus 218 ~Cg~~~~C~~C~~~ 231 (505)
T TIGR00595 218 SCGYILCCPNCDVS 231 (505)
T ss_pred hCcCccCCCCCCCc
Confidence 57777777777643
No 155
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=23.17 E-value=2e+02 Score=21.54 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023757 164 LTIFGAFLIAKRVIRCILQRKRRWELRRRVLAAA 197 (277)
Q Consensus 164 ~~~vGv~ll~~~~~r~~~~~r~~~~~~~~~~~~~ 197 (277)
|=++|+....+..+||......|+++-+++.+..
T Consensus 52 lElvGlgyt~wF~~ryLL~~~~R~el~~~i~~~k 85 (90)
T PF14159_consen 52 LELVGLGYTGWFVYRYLLFAENRQELLQKIQSLK 85 (90)
T ss_pred HHHHHHHHHhHHHHHHHcChHhHHHHHHHHHHHH
Confidence 3445777788888888877777777776666544
No 156
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=23.10 E-value=2.7e+02 Score=24.10 Aligned_cols=14 Identities=36% Similarity=0.249 Sum_probs=7.0
Q ss_pred eeeee-cccCCCceE
Q 023757 99 VKRIG-RLLPTGTSL 112 (277)
Q Consensus 99 ~~~~E-~vL~~G~~l 112 (277)
++..| .+|=.|++|
T Consensus 81 ~kp~e~~~lFdg~SL 95 (196)
T PF08229_consen 81 YKPSESNKLFDGASL 95 (196)
T ss_pred cCCcHHhhcccchhH
Confidence 34443 455666653
No 157
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=22.65 E-value=53 Score=21.68 Aligned_cols=38 Identities=29% Similarity=0.586 Sum_probs=15.9
Q ss_pred ccccccccccceEE-ecCCCcccCccchhcC--------CCCcccccc
Q 023757 229 LCVICLEQEYNAVF-FPCGHLCCCLICSSRL--------TNCPLCRRR 267 (277)
Q Consensus 229 ~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~l--------~~CPiCR~~ 267 (277)
.|++....-..++= ..|.|+- |.+=..-+ =.||+|.++
T Consensus 4 ~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 4 RCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp B-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 57777766655443 4788986 54322111 279999864
No 158
>COG3701 TrbF Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]
Probab=22.56 E-value=43 Score=29.17 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=38.1
Q ss_pred CCCeEEecCChHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 023757 133 KGPFYVSPKTIDELLENLGKWARWYKYASFGLTIFGAFLIAKRVIR 178 (277)
Q Consensus 133 ~g~f~ls~~s~~~Ll~~l~s~~r~~~~~si~~~~vGv~ll~~~~~r 178 (277)
..||.-.....|+-+.+....++.|++++++..++++++.+...++
T Consensus 17 ~tPYq~A~q~WderiGs~r~qA~nwr~~~lg~l~la~~~~gg~vwq 62 (228)
T COG3701 17 ETPYQKARQSWDERIGSARVQAQNWRFVGLGGLTLALALAGGLVWQ 62 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccceee
Confidence 4588888888999999999999999999988888777777666555
No 159
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=22.55 E-value=2e+02 Score=23.13 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 023757 170 FLIAKRVIRCIL 181 (277)
Q Consensus 170 ~ll~~~~~r~~~ 181 (277)
+++.+..+|+++
T Consensus 35 ~~~~~~~~r~~~ 46 (146)
T PF14316_consen 35 ILLLWRLWRRWR 46 (146)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 160
>PF10882 bPH_5: Bacterial PH domain; InterPro: IPR020482 This entry contains membrane proteins with no known function.
Probab=22.40 E-value=1.6e+02 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=23.3
Q ss_pred CCCeEEeCCCCCCeEEecCChHHHHHHhhh
Q 023757 123 IGTVRIQRPHKGPFYVSPKTIDELLENLGK 152 (277)
Q Consensus 123 ~g~~~iq~P~~g~f~ls~~s~~~Ll~~l~s 152 (277)
...+.|+-.. +.|++|+.+.+++++.+++
T Consensus 70 ~~~i~I~t~~-~~y~isp~~~~~fi~~l~~ 98 (100)
T PF10882_consen 70 KNVILIKTKD-KTYVISPEDPEEFIEALKK 98 (100)
T ss_pred CCEEEEEECC-ceEEEcCCCHHHHHHHHHh
Confidence 4567776555 7899999999999998775
No 161
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=22.34 E-value=50 Score=35.67 Aligned_cols=43 Identities=23% Similarity=0.600 Sum_probs=28.6
Q ss_pred cccccccccccc----ceEEecCCCc--ccCccchhc-----CCCCcccccccc
Q 023757 227 PDLCVICLEQEY----NAVFFPCGHL--CCCLICSSR-----LTNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~----~~~~~pCgH~--~~C~~C~~~-----l~~CPiCR~~i~ 269 (277)
...|.||-+.-. --.|+-|... ..|..|+.= .+.||.|++...
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 458999998532 1245555432 149999853 378999998765
No 162
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.33 E-value=35 Score=25.08 Aligned_cols=8 Identities=50% Similarity=1.277 Sum_probs=6.3
Q ss_pred CCCccccc
Q 023757 259 TNCPLCRR 266 (277)
Q Consensus 259 ~~CPiCR~ 266 (277)
.-||.||.
T Consensus 22 D~CPrCrG 29 (88)
T COG3809 22 DYCPRCRG 29 (88)
T ss_pred eeCCcccc
Confidence 47999985
No 163
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=21.60 E-value=3e+02 Score=19.45 Aligned_cols=18 Identities=17% Similarity=0.558 Sum_probs=11.1
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 023757 156 WYKYASFGLTIFGAFLIA 173 (277)
Q Consensus 156 ~~~~~si~~~~vGv~ll~ 173 (277)
++.|++.+.+++.++++.
T Consensus 17 fyVWlA~~~tll~l~~l~ 34 (67)
T COG3114 17 FYVWLAVGMTLLPLAVLV 34 (67)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455777777776655543
No 164
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=29 Score=27.86 Aligned_cols=20 Identities=35% Similarity=0.997 Sum_probs=14.9
Q ss_pred Cccchhc-CCCCccccccccc
Q 023757 251 CLICSSR-LTNCPLCRRRIDQ 270 (277)
Q Consensus 251 C~~C~~~-l~~CPiCR~~i~~ 270 (277)
|..|-.. +..||+|..+|..
T Consensus 31 cskcgeati~qcp~csasirg 51 (160)
T COG4306 31 CSKCGEATITQCPICSASIRG 51 (160)
T ss_pred HhhhchHHHhcCCccCCcccc
Confidence 6677554 5789999988865
No 165
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=20.86 E-value=5.2e+02 Score=22.75 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=32.9
Q ss_pred CCceEEEEEEEEeCCCCCeEEeCCCCC-C-eEEec--CChHHHHHHhhhhHHHHHHHH----hHHHHHHHHHHHH
Q 023757 108 TGTSLTVVGEAVKDDIGTVRIQRPHKG-P-FYVSP--KTIDELLENLGKWARWYKYAS----FGLTIFGAFLIAK 174 (277)
Q Consensus 108 ~G~~lt~vGe~~~d~~g~~~iq~P~~g-~-f~ls~--~s~~~Ll~~l~s~~r~~~~~s----i~~~~vGv~ll~~ 174 (277)
....+|+||... ++++.==.-.+| . ..+.. .+.+++..+....-....|+. .++..+|+.+++.
T Consensus 132 ~~~~vTVVa~q~---g~~l~py~t~~g~~i~ll~~G~~s~~e~f~~~~~~n~~~tW~lR~~G~llmf~G~~~~~~ 203 (248)
T PF07787_consen 132 PPGPVTVVAKQR---GNTLVPYTTKNGDKILLLEEGKVSAEEMFAKEHSANNTLTWILRFIGWLLMFIGFFLLFS 203 (248)
T ss_pred CCceEEEEEEEe---CCEEEEEEecCCCEEEEEEcCCcCHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567799999854 233321122233 3 33444 466888887665544444433 3333344444443
No 166
>KOG1819 consensus FYVE finger-containing proteins [General function prediction only]
Probab=20.84 E-value=1.4e+02 Score=29.59 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=18.0
Q ss_pred ccccccccc----cceEEecCCCcccCccchhc
Q 023757 229 LCVICLEQE----YNAVFFPCGHLCCCLICSSR 257 (277)
Q Consensus 229 ~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~ 257 (277)
.|..|.... +.--.-.||-+| |..|...
T Consensus 903 ~cmacq~pf~afrrrhhcrncggif-cg~cs~a 934 (990)
T KOG1819|consen 903 QCMACQMPFNAFRRRHHCRNCGGIF-CGKCSCA 934 (990)
T ss_pred hhhhccCcHHHHHHhhhhcccCcee-ecccccC
Confidence 677776532 223335799888 8888754
No 167
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=20.63 E-value=2.5e+02 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=5.8
Q ss_pred HHHHHhHHHHHH
Q 023757 157 YKYASFGLTIFG 168 (277)
Q Consensus 157 ~~~~si~~~~vG 168 (277)
+-|.+.+++++.
T Consensus 7 yVW~sYg~t~l~ 18 (45)
T TIGR03141 7 YVWLAYGITALV 18 (45)
T ss_pred HHHHHHHHHHHH
Confidence 345555555443
No 168
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=20.50 E-value=5e+02 Score=21.55 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=41.0
Q ss_pred cccccceeeeeeeeeecccCCCceEEEEEEEEeCCCCCeEEeCCCCCCeEEecCChHHHHHHhhhhH
Q 023757 88 LDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAVKDDIGTVRIQRPHKGPFYVSPKTIDELLENLGKWA 154 (277)
Q Consensus 88 ~~~~~g~~~~G~~~~E~vL~~G~~lt~vGe~~~d~~g~~~iq~P~~g~f~ls~~s~~~Ll~~l~s~~ 154 (277)
.++-.|..+.|+..++..=|.|.++.+.---.+| +|+ |.--.|||+.--+..-...|++..
T Consensus 10 v~~qlgr~prgvl~I~~rcp~g~P~VV~t~p~l~-dg~-----PfPTly~lt~P~L~kaaSrLEs~g 70 (167)
T COG1507 10 VGRQLGRAPRGVLKIAYRCPYGEPGVVKTAPKLD-DGT-----PFPTLYYLTHPVLTKAASRLESTG 70 (167)
T ss_pred HHHHhcccccCceEEEEECCCCCceEEeecCCCC-CCC-----cCCceeeecChHHHHHHHHHHHhh
Confidence 3455688999999999999999887554221223 343 444479999766666666666544
No 169
>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1). Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization.
Probab=20.16 E-value=1.2e+02 Score=22.65 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=17.7
Q ss_pred eecccCCCceEEEEEEEEeCCCCCeEE
Q 023757 102 IGRLLPTGTSLTVVGEAVKDDIGTVRI 128 (277)
Q Consensus 102 ~E~vL~~G~~lt~vGe~~~d~~g~~~i 128 (277)
...-|++|..+-+.|.+..= .|.+.+
T Consensus 59 ~~~~i~~G~vvrV~G~i~~f-rg~~ql 84 (92)
T cd04483 59 QAKVLEIGDLLRVRGSIRTY-RGEREI 84 (92)
T ss_pred cccccCCCCEEEEEEEEecc-CCeeEE
Confidence 34568999999999996432 454443
No 170
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=20.06 E-value=49 Score=20.22 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=10.0
Q ss_pred CCCCccccccccce
Q 023757 258 LTNCPLCRRRIDQV 271 (277)
Q Consensus 258 l~~CPiCR~~i~~~ 271 (277)
...||.|...+.++
T Consensus 26 ~~~CP~Cg~~~~r~ 39 (41)
T smart00834 26 LATCPECGGDVRRL 39 (41)
T ss_pred CCCCCCCCCcceec
Confidence 35899999865443
No 171
>PHA02700 ORF017 DNA-binding phosphoprotein; Provisional
Probab=20.01 E-value=67 Score=24.67 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=16.2
Q ss_pred EeeEEEe-CCCeEEEEeCCCCc
Q 023757 44 EVPWYLD-DGTGCVFVVGARGA 64 (277)
Q Consensus 44 ~vPf~L~-d~~~~V~V~~~~~a 64 (277)
..||+++ ||.|++.|..+..-
T Consensus 8 ~~PFiint~geGr~LVLKavkl 29 (106)
T PHA02700 8 KRPFIVNVEGQGRVLVLRYVRM 29 (106)
T ss_pred cCCeEEeecCcceEEEEEEEee
Confidence 3899995 66899999766554
Done!