Query 023757
Match_columns 277
No_of_seqs 245 out of 1305
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:16:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.6 1.8E-15 6.1E-20 107.9 4.0 55 223-277 11-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 1.2E-14 4E-19 102.0 1.0 52 226-277 6-63 (63)
3 2vje_A E3 ubiquitin-protein li 99.4 5.7E-14 2E-18 98.8 0.6 51 227-277 8-64 (64)
4 2yho_A E3 ubiquitin-protein li 99.3 3.7E-13 1.3E-17 98.6 3.3 50 227-276 18-67 (79)
5 4ic3_A E3 ubiquitin-protein li 99.3 7.2E-13 2.5E-17 95.7 3.0 51 227-277 24-74 (74)
6 2ecg_A Baculoviral IAP repeat- 99.3 1.9E-13 6.6E-18 98.9 -1.1 51 227-277 25-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.0 7.3E-11 2.5E-15 109.0 3.9 51 227-277 295-345 (345)
8 2d8t_A Dactylidin, ring finger 98.9 7.7E-10 2.6E-14 78.7 3.3 44 226-270 14-61 (71)
9 2ysl_A Tripartite motif-contai 98.9 1.5E-09 5.2E-14 77.2 4.0 45 225-270 18-69 (73)
10 2ecn_A Ring finger protein 141 98.8 1.1E-09 3.7E-14 77.5 2.3 48 226-275 14-65 (70)
11 2csy_A Zinc finger protein 183 98.8 1.6E-09 5.4E-14 79.0 3.2 45 225-270 13-61 (81)
12 1chc_A Equine herpes virus-1 r 98.8 1.4E-09 4.6E-14 76.5 2.5 49 227-276 5-58 (68)
13 4ayc_A E3 ubiquitin-protein li 98.7 2.2E-09 7.6E-14 86.3 1.7 44 228-272 54-101 (138)
14 2ea6_A Ring finger protein 4; 98.7 2.6E-09 8.9E-14 74.9 1.7 44 226-270 14-68 (69)
15 2djb_A Polycomb group ring fin 98.7 5.9E-09 2E-13 74.2 3.2 47 225-272 13-64 (72)
16 1bor_A Transcription factor PM 98.7 3.5E-09 1.2E-13 71.9 1.5 43 227-270 6-49 (56)
17 2kiz_A E3 ubiquitin-protein li 98.7 6.5E-09 2.2E-13 73.2 2.9 47 226-273 13-66 (69)
18 2yur_A Retinoblastoma-binding 98.7 7.5E-09 2.6E-13 74.2 3.2 45 225-270 13-64 (74)
19 2xeu_A Ring finger protein 4; 98.7 3.9E-09 1.3E-13 72.9 1.6 48 227-275 3-63 (64)
20 3ng2_A RNF4, snurf, ring finge 98.7 3.4E-09 1.2E-13 74.9 1.1 48 227-275 10-70 (71)
21 2ecm_A Ring finger and CHY zin 98.7 7E-09 2.4E-13 69.6 2.3 42 227-269 5-54 (55)
22 2egp_A Tripartite motif-contai 98.7 6.8E-09 2.3E-13 74.9 2.3 44 226-270 11-65 (79)
23 2ecy_A TNF receptor-associated 98.7 5.7E-09 1.9E-13 73.0 1.7 44 226-270 14-62 (66)
24 2ecw_A Tripartite motif-contai 98.7 1.7E-08 5.7E-13 73.5 4.1 45 225-270 17-71 (85)
25 2ct2_A Tripartite motif protei 98.6 1.1E-08 3.8E-13 75.2 3.1 44 226-270 14-68 (88)
26 2ecv_A Tripartite motif-contai 98.6 1.4E-08 4.8E-13 73.9 3.5 45 225-270 17-71 (85)
27 2ect_A Ring finger protein 126 98.6 1.4E-08 4.9E-13 73.1 3.4 46 225-271 13-65 (78)
28 2ep4_A Ring finger protein 24; 98.6 1.4E-08 4.6E-13 72.5 2.9 47 226-273 14-67 (74)
29 2l0b_A E3 ubiquitin-protein li 98.6 1.6E-08 5.4E-13 75.5 2.3 44 226-270 39-89 (91)
30 1iym_A EL5; ring-H2 finger, ub 98.6 2.1E-08 7.2E-13 67.3 2.5 42 227-269 5-54 (55)
31 2y1n_A E3 ubiquitin-protein li 98.6 2.3E-08 7.9E-13 93.2 3.5 46 228-274 333-383 (389)
32 1x4j_A Ring finger protein 38; 98.6 1.7E-08 5.8E-13 72.3 2.1 44 226-270 22-72 (75)
33 3ztg_A E3 ubiquitin-protein li 98.6 2.2E-08 7.4E-13 74.5 2.6 44 225-269 11-61 (92)
34 3l11_A E3 ubiquitin-protein li 98.5 2.5E-08 8.4E-13 77.4 2.3 45 225-270 13-62 (115)
35 1e4u_A Transcriptional repress 98.5 2E-08 7E-13 73.0 1.2 49 226-275 10-67 (78)
36 2ysj_A Tripartite motif-contai 98.5 6.3E-08 2.2E-12 66.8 3.7 39 225-264 18-63 (63)
37 3fl2_A E3 ubiquitin-protein li 98.5 2.1E-08 7.2E-13 78.9 1.1 43 227-270 52-99 (124)
38 1g25_A CDK-activating kinase a 98.5 2.2E-08 7.4E-13 69.7 0.8 42 228-270 4-55 (65)
39 1t1h_A Gspef-atpub14, armadill 98.4 5.1E-08 1.8E-12 70.2 2.0 44 226-270 7-55 (78)
40 3lrq_A E3 ubiquitin-protein li 98.4 3.8E-08 1.3E-12 74.7 1.0 43 227-270 22-70 (100)
41 2ecj_A Tripartite motif-contai 98.4 5.5E-08 1.9E-12 65.8 1.6 38 226-264 14-58 (58)
42 1z6u_A NP95-like ring finger p 98.4 5.2E-08 1.8E-12 79.5 1.1 44 227-271 78-126 (150)
43 2ckl_A Polycomb group ring fin 98.4 8.5E-08 2.9E-12 73.5 2.1 43 227-270 15-62 (108)
44 2y43_A E3 ubiquitin-protein li 98.4 6.1E-08 2.1E-12 73.1 1.1 43 227-270 22-69 (99)
45 1jm7_A BRCA1, breast cancer ty 98.3 7E-08 2.4E-12 74.1 0.5 43 227-270 21-70 (112)
46 3hct_A TNF receptor-associated 98.3 2E-07 6.9E-12 72.6 3.0 45 225-270 16-65 (118)
47 2ckl_B Ubiquitin ligase protei 98.3 1.2E-07 3.9E-12 78.3 1.5 44 226-270 53-102 (165)
48 1jm7_B BARD1, BRCA1-associated 98.3 1.6E-07 5.4E-12 73.1 1.6 42 227-269 22-66 (117)
49 1rmd_A RAG1; V(D)J recombinati 98.2 2.3E-07 8E-12 71.9 1.3 44 226-270 22-70 (116)
50 1v87_A Deltex protein 2; ring- 98.2 2E-07 7E-12 71.9 0.7 42 228-270 26-94 (114)
51 1wgm_A Ubiquitin conjugation f 98.2 7.5E-07 2.6E-11 67.4 3.6 45 225-270 20-69 (98)
52 2kr4_A Ubiquitin conjugation f 98.2 6.8E-07 2.3E-11 65.8 3.0 45 225-270 12-60 (85)
53 2kre_A Ubiquitin conjugation f 98.2 7E-07 2.4E-11 67.8 2.8 45 225-270 27-75 (100)
54 4ap4_A E3 ubiquitin ligase RNF 98.2 3.4E-07 1.2E-11 71.9 0.9 43 227-270 7-60 (133)
55 2ecl_A Ring-box protein 2; RNF 98.1 5.1E-07 1.7E-11 65.8 1.5 42 228-270 16-76 (81)
56 4ap4_A E3 ubiquitin ligase RNF 98.1 7.2E-07 2.5E-11 70.0 1.4 49 226-275 71-132 (133)
57 3knv_A TNF receptor-associated 98.1 4.6E-07 1.6E-11 73.1 0.1 43 225-268 29-76 (141)
58 2c2l_A CHIP, carboxy terminus 98.1 1.4E-06 4.7E-11 76.9 3.1 45 225-270 206-255 (281)
59 3hcs_A TNF receptor-associated 97.9 2.9E-06 1E-10 70.0 2.3 45 225-270 16-65 (170)
60 3dpl_R Ring-box protein 1; ubi 97.9 3.1E-06 1.1E-10 65.0 1.5 42 227-269 37-100 (106)
61 2f42_A STIP1 homology and U-bo 97.9 1.6E-05 5.5E-10 66.5 5.5 45 225-270 104-153 (179)
62 4a0k_B E3 ubiquitin-protein li 97.7 5.2E-06 1.8E-10 64.8 0.1 42 227-269 48-111 (117)
63 2yu4_A E3 SUMO-protein ligase 97.7 1.5E-05 5E-10 59.6 2.3 40 227-267 7-59 (94)
64 3vk6_A E3 ubiquitin-protein li 97.5 4E-05 1.4E-09 57.6 2.6 45 229-274 3-53 (101)
65 3htk_C E3 SUMO-protein ligase 97.5 0.00014 4.7E-09 64.2 5.9 45 225-270 179-232 (267)
66 2d8s_A Cellular modulator of i 97.4 6.2E-05 2.1E-09 54.6 2.6 44 227-271 15-71 (80)
67 1wim_A KIAA0161 protein; ring 97.2 4.8E-05 1.7E-09 56.5 -0.3 40 227-267 5-61 (94)
68 2bay_A PRE-mRNA splicing facto 96.8 0.00047 1.6E-08 47.3 2.1 48 227-275 3-57 (61)
69 1vyx_A ORF K3, K3RING; zinc-bi 95.8 0.002 6.9E-08 43.9 0.8 43 227-269 6-58 (60)
70 2ct0_A Non-SMC element 1 homol 93.5 0.065 2.2E-06 38.0 3.7 44 227-271 15-65 (74)
71 3k1l_B Fancl; UBC, ring, RWD, 93.2 0.016 5.6E-07 52.9 0.1 44 227-271 308-374 (381)
72 2ko5_A Ring finger protein Z; 85.9 0.74 2.5E-05 33.9 3.7 47 226-274 27-77 (99)
73 2jun_A Midline-1; B-BOX, TRIM, 82.2 0.26 9E-06 36.2 -0.0 29 228-257 4-35 (101)
74 2zet_C Melanophilin; complex, 80.7 3.3 0.00011 33.2 6.0 41 226-267 67-117 (153)
75 3nw0_A Non-structural maintena 58.9 3.6 0.00012 35.3 1.7 43 228-271 181-230 (238)
76 2cs3_A Protein C14ORF4, MY039 57.5 2.6 8.7E-05 30.1 0.4 30 227-257 15-48 (93)
77 1zbd_B Rabphilin-3A; G protein 50.3 42 0.0014 26.0 6.4 40 227-267 55-107 (134)
78 2jne_A Hypothetical protein YF 36.1 12 0.0004 27.7 1.0 40 227-271 32-74 (101)
79 2knc_B Integrin beta-3; transm 35.2 1.1E+02 0.0039 21.3 7.9 14 177-190 35-48 (79)
80 2hw2_A Rifampin ADP-ribosyl tr 33.1 23 0.00079 27.7 2.3 47 51-119 67-113 (143)
81 3pwf_A Rubrerythrin; non heme 31.9 18 0.00063 29.2 1.7 26 244-273 143-168 (170)
82 3kdf_D Replication protein A 3 28.8 1.3E+02 0.0043 22.7 6.0 25 103-128 77-101 (132)
83 3mjh_B Early endosome antigen 28.4 6 0.00021 23.4 -1.3 9 261-269 8-16 (34)
84 4gop_B Putative uncharacterize 25.3 1.9E+02 0.0066 21.7 6.5 25 103-128 82-106 (136)
85 1mm2_A MI2-beta; PHD, zinc fin 25.3 45 0.0015 21.9 2.4 11 226-236 8-18 (61)
86 2egq_A FHL1 protein; LIM domai 24.7 36 0.0012 22.8 2.0 19 251-269 6-26 (77)
87 1lko_A Rubrerythrin all-iron(I 24.0 29 0.00099 28.4 1.6 27 243-273 159-186 (191)
88 1weo_A Cellulose synthase, cat 23.6 24 0.00083 25.6 0.8 44 227-270 16-70 (93)
89 2ehe_A Four and A half LIM dom 23.3 31 0.0011 23.5 1.4 19 251-269 6-26 (82)
90 2cuq_A Four and A half LIM dom 22.7 34 0.0012 23.1 1.5 19 251-269 6-26 (80)
91 2d8v_A Zinc finger FYVE domain 22.5 38 0.0013 23.1 1.6 31 226-258 7-38 (67)
92 2fiy_A Protein FDHE homolog; F 22.5 30 0.001 30.8 1.4 41 227-267 182-231 (309)
93 2gmg_A Hypothetical protein PF 21.5 38 0.0013 25.2 1.6 22 244-267 72-93 (105)
94 2jvx_A NF-kappa-B essential mo 21.3 23 0.00078 19.9 0.3 10 260-269 5-14 (28)
95 6rxn_A Rubredoxin; electron tr 21.3 39 0.0013 21.2 1.4 14 260-273 32-45 (46)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.8e-15 Score=107.88 Aligned_cols=55 Identities=27% Similarity=0.664 Sum_probs=50.0
Q ss_pred CCccccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 223 DRVMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 223 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
...+...|+||++++++++++||||+++|..|+..+..||+||++|...+++|++
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 3444568999999999999999999988999999999999999999999999964
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.44 E-value=1.2e-14 Score=102.00 Aligned_cols=52 Identities=29% Similarity=0.815 Sum_probs=47.1
Q ss_pred cccccccccccccceEEe--cCCCcccCccchhcCC----CCccccccccceeecccC
Q 023757 226 MPDLCVICLEQEYNAVFF--PCGHLCCCLICSSRLT----NCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~l~----~CPiCR~~i~~~~~~f~~ 277 (277)
....|+||++++++.+++ ||||+++|..|+..+. .||+||++|..++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 356899999999998888 9999988999999875 999999999999999975
No 3
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.37 E-value=5.7e-14 Score=98.78 Aligned_cols=51 Identities=35% Similarity=0.823 Sum_probs=46.3
Q ss_pred ccccccccccccceEEe--cCCCcccCccchhcC----CCCccccccccceeecccC
Q 023757 227 PDLCVICLEQEYNAVFF--PCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~f~~ 277 (277)
+..|+||++++++++++ ||||++.|..|+..+ ..||+||++|..++++|.+
T Consensus 8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 45899999999999998 999998899999886 3699999999999999964
No 4
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.34 E-value=3.7e-13 Score=98.59 Aligned_cols=50 Identities=42% Similarity=1.130 Sum_probs=46.9
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeeccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFR 276 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~ 276 (277)
...|+||++..++++++||||.++|..|+..+..||+||.+|...+++|.
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBC
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEe
Confidence 34899999999999999999997799999999999999999999999985
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.30 E-value=7.2e-13 Score=95.68 Aligned_cols=51 Identities=33% Similarity=0.870 Sum_probs=47.0
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
...|+||++...+++++||||.+.|..|+..+..||+||.+|...+++|-|
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 458999999999999999999966999999999999999999999999854
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-13 Score=98.89 Aligned_cols=51 Identities=35% Similarity=0.903 Sum_probs=47.3
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|-|
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 458999999999999999999966999999999999999999999999865
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.04 E-value=7.3e-11 Score=108.96 Aligned_cols=51 Identities=43% Similarity=1.031 Sum_probs=46.7
Q ss_pred ccccccccccccceEEecCCCcccCccchhcCCCCccccccccceeecccC
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRLTNCPLCRRRIDQVVRTFRH 277 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~~f~~ 277 (277)
...|+||++...+++++||||.++|..|+..+..||+||.+|...+++|-|
T Consensus 295 ~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 295 ERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 458999999999999999999977999999999999999999999999964
No 8
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=7.7e-10 Score=78.68 Aligned_cols=44 Identities=34% Similarity=0.862 Sum_probs=39.1
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
....|+||++...+.+.+||||.+ |..|+... ..||+||..|..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 356899999999999999999998 99999874 589999999874
No 9
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.5e-09 Score=77.22 Aligned_cols=45 Identities=33% Similarity=0.837 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-------CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i~~ 270 (277)
.....|+||++...+.+++||||.+ |..|+... ..||+||.++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3456999999999999999999998 99999764 279999999864
No 10
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=77.49 Aligned_cols=48 Identities=27% Similarity=0.800 Sum_probs=41.3
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCccccccccceeecc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTF 275 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~f 275 (277)
....|.||++...+ +++||||.+ |..|+... ..||+||.++......|
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 35689999999988 889999998 99999864 68999999998876655
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=78.97 Aligned_cols=45 Identities=27% Similarity=0.597 Sum_probs=39.4
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
.....|+||++...+++++||||.+ |..|+... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG 61 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred CCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence 3456899999999999999999999 99999764 689999999864
No 12
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.81 E-value=1.4e-09 Score=76.48 Aligned_cols=49 Identities=39% Similarity=0.945 Sum_probs=41.6
Q ss_pred ccccccccccccc-eEEecCCCcccCccchhcC----CCCccccccccceeeccc
Q 023757 227 PDLCVICLEQEYN-AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRTFR 276 (277)
Q Consensus 227 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~f~ 276 (277)
...|+||++...+ .+++||||.+ |..|+... ..||+||.++...++.++
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 4589999999988 5889999998 99999763 689999999998776654
No 13
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.74 E-value=2.2e-09 Score=86.27 Aligned_cols=44 Identities=34% Similarity=0.782 Sum_probs=38.8
Q ss_pred cccccccccccceEEecCCCcccCccchhcC----CCCcccccccccee
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
..|+||++...+++++||||.+ |..|+... ..||+||.+|....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 4799999999999999999998 99998763 68999999987643
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.6e-09 Score=74.91 Aligned_cols=44 Identities=32% Similarity=0.772 Sum_probs=37.0
Q ss_pred cccccccccccccce-------EEecCCCcccCccchhcC----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
....|.||++...+. +++||||.+ |..|+... ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 356899999977665 889999998 99999864 689999998864
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=5.9e-09 Score=74.21 Aligned_cols=47 Identities=30% Similarity=0.536 Sum_probs=39.9
Q ss_pred ccccccccccccccceEEe-cCCCcccCccchhcC----CCCcccccccccee
Q 023757 225 VMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQVV 272 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~ 272 (277)
.+...|.||++...+.+.+ ||||.+ |..|+... ..||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCccc
Confidence 3456899999999988887 999999 99999763 68999999987643
No 16
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=3.5e-09 Score=71.94 Aligned_cols=43 Identities=23% Similarity=0.524 Sum_probs=38.1
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC-CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-~~CPiCR~~i~~ 270 (277)
...|.||++...+.+.+||||.+ |..|+... ..||+||+.+..
T Consensus 6 ~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 6 FLRCQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSSSSSCSSCCSSSSC
T ss_pred CCCceEeCCccCCeEEcCCCCcc-cHHHHccCCCCCCcCCcEeec
Confidence 45899999999999999999999 99999765 589999998764
No 17
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.69 E-value=6.5e-09 Score=73.19 Aligned_cols=47 Identities=30% Similarity=0.722 Sum_probs=38.2
Q ss_pred cccccccccccc---cceEEecCCCcccCccchhcC----CCCccccccccceee
Q 023757 226 MPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 273 (277)
Q Consensus 226 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~ 273 (277)
....|.||++.. ..++.+||||.+ |..|+... ..||+||..|....+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 356899997754 567889999998 99999864 689999999987554
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.69 E-value=7.5e-09 Score=74.16 Aligned_cols=45 Identities=31% Similarity=0.667 Sum_probs=38.8
Q ss_pred ccccccccccccccceEEec-CCCcccCccchhcC------CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL------TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~l------~~CPiCR~~i~~ 270 (277)
.....|.||++...+.+.+| |||.| |..|+... ..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 34569999999999999999 99999 99999763 489999998654
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.69 E-value=3.9e-09 Score=72.86 Aligned_cols=48 Identities=29% Similarity=0.718 Sum_probs=39.1
Q ss_pred ccccccccccccce-------EEecCCCcccCccchhcC----CCCccccccccc--eeecc
Q 023757 227 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 227 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~--~~~~f 275 (277)
...|+||++...+. ++++|||.+ |..|+... ..||+||.++.. +.++|
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 35899999976654 888999998 99999764 689999999884 55555
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.68 E-value=3.4e-09 Score=74.89 Aligned_cols=48 Identities=29% Similarity=0.735 Sum_probs=38.9
Q ss_pred ccccccccccccce-------EEecCCCcccCccchhcC----CCCccccccccc--eeecc
Q 023757 227 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 227 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~--~~~~f 275 (277)
...|.||++...+. +.+||||.+ |..|+... ..||+||.++.. +.++|
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 45899999977665 889999999 99999764 699999999874 34444
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.66 E-value=7e-09 Score=69.56 Aligned_cols=42 Identities=38% Similarity=0.801 Sum_probs=35.9
Q ss_pred ccccccccccccc----eEEecCCCcccCccchhcC----CCCcccccccc
Q 023757 227 PDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
...|.||++...+ ++++||||.+ |..|+... ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 4589999997654 8889999998 99999874 68999999875
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.66 E-value=6.8e-09 Score=74.88 Aligned_cols=44 Identities=30% Similarity=0.650 Sum_probs=38.2
Q ss_pred cccccccccccccceEEecCCCcccCccchhc-----------CCCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSR-----------LTNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-----------l~~CPiCR~~i~~ 270 (277)
+...|+||++...+++.+||||.+ |..|+.. ...||+||..+..
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 356899999999999999999999 9999975 3479999999864
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=5.7e-09 Score=72.98 Aligned_cols=44 Identities=25% Similarity=0.492 Sum_probs=38.5
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
+...|+||++...+.+.++|||.+ |..|+... ..||+||.++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 456899999999999989999999 99999753 489999999865
No 24
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.65 E-value=1.7e-08 Score=73.50 Aligned_cols=45 Identities=33% Similarity=0.593 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEecCCCcccCccchhc----------CCCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSR----------LTNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----------l~~CPiCR~~i~~ 270 (277)
.....|.||++...+.+.+||||.+ |..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456899999999999999999998 9999875 3589999999874
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=75.19 Aligned_cols=44 Identities=30% Similarity=0.708 Sum_probs=37.7
Q ss_pred cccccccccccccc----eEEecCCCcccCccchhcC-------CCCccccccccc
Q 023757 226 MPDLCVICLEQEYN----AVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i~~ 270 (277)
+...|.||++...+ ++++||||.+ |..|+... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 35689999998888 9999999999 99999764 589999997753
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.4e-08 Score=73.88 Aligned_cols=45 Identities=31% Similarity=0.697 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEecCCCcccCccchhc----------CCCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSR----------LTNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----------l~~CPiCR~~i~~ 270 (277)
.....|+||++...+.+.+||||.+ |..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456899999999999999999998 9999875 3589999999874
No 27
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.64 E-value=1.4e-08 Score=73.15 Aligned_cols=46 Identities=26% Similarity=0.552 Sum_probs=36.5
Q ss_pred ccccccccccccc---cceEEecCCCcccCccchhcC----CCCccccccccce
Q 023757 225 VMPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQV 271 (277)
Q Consensus 225 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~ 271 (277)
.....|.||++.. ..+..+||||.+ |..|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCCc
Confidence 3456899997754 455778999998 99999763 6899999998763
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=72.52 Aligned_cols=47 Identities=30% Similarity=0.670 Sum_probs=37.8
Q ss_pred cccccccccccc---cceEEecCCCcccCccchhcC----CCCccccccccceee
Q 023757 226 MPDLCVICLEQE---YNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVR 273 (277)
Q Consensus 226 ~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~ 273 (277)
....|.||++.. ..+..+||||.+ |..|+... ..||+||.+|.....
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCcccccccc
Confidence 356899999875 445667999998 99999763 689999999987644
No 29
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.58 E-value=1.6e-08 Score=75.46 Aligned_cols=44 Identities=30% Similarity=0.578 Sum_probs=36.7
Q ss_pred cccccccccccccc---eEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYN---AVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
....|.||++.... ++.+||||.| |..|+... ..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 35589999987665 7889999998 99999763 689999998864
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.57 E-value=2.1e-08 Score=67.26 Aligned_cols=42 Identities=36% Similarity=0.791 Sum_probs=35.0
Q ss_pred ccccccccccccc---eEEec-CCCcccCccchhcC----CCCcccccccc
Q 023757 227 PDLCVICLEQEYN---AVFFP-CGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
...|.||++...+ ++.+| |||.+ |..|+... ..||+||.++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 3579999998766 77787 99998 99999864 68999999864
No 31
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.57 E-value=2.3e-08 Score=93.17 Aligned_cols=46 Identities=37% Similarity=0.848 Sum_probs=41.0
Q ss_pred cccccccccccceEEecCCCcccCccchhc-----CCCCccccccccceeec
Q 023757 228 DLCVICLEQEYNAVFFPCGHLCCCLICSSR-----LTNCPLCRRRIDQVVRT 274 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-----l~~CPiCR~~i~~~~~~ 274 (277)
..|+||++...+++++||||.+ |..|+.. ...||+||.++.....+
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 5899999999999999999999 9999974 46899999999886554
No 32
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.7e-08 Score=72.31 Aligned_cols=44 Identities=27% Similarity=0.661 Sum_probs=35.9
Q ss_pred ccccccccccccc---ceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 226 MPDLCVICLEQEY---NAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
....|.||++... .++.+||||.+ |..|+... ..||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3458999997654 35788999998 99999874 689999998865
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.56 E-value=2.2e-08 Score=74.51 Aligned_cols=44 Identities=32% Similarity=0.680 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEec-CCCcccCccchhcC------CCCcccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~l------~~CPiCR~~i~ 269 (277)
.+...|+||++...+++.+| |||.+ |..|+... ..||+||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 34569999999999999999 99999 99999753 48999999873
No 34
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.53 E-value=2.5e-08 Score=77.42 Aligned_cols=45 Identities=36% Similarity=0.800 Sum_probs=39.1
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
.+...|.||++...+++.+||||.+ |..|+... ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3456899999999999999999999 99999774 489999999864
No 35
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.51 E-value=2e-08 Score=73.00 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=38.4
Q ss_pred cccccccccccc--cceEEec--CCCcccCccchhcC-----CCCccccccccceeecc
Q 023757 226 MPDLCVICLEQE--YNAVFFP--CGHLCCCLICSSRL-----TNCPLCRRRIDQVVRTF 275 (277)
Q Consensus 226 ~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~l-----~~CPiCR~~i~~~~~~f 275 (277)
++..|+||++.. .+..++| |||.+ |..|...+ ..||+||.++......|
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 345899999966 3456666 99998 99998765 48999999998755444
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=6.3e-08 Score=66.84 Aligned_cols=39 Identities=38% Similarity=0.909 Sum_probs=33.7
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-------CCCccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLC 264 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiC 264 (277)
.+...|+||++...+++.+||||.+ |..|+... ..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 3456899999999999999999999 99998763 379998
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.50 E-value=2.1e-08 Score=78.89 Aligned_cols=43 Identities=28% Similarity=0.673 Sum_probs=38.2
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
...|+||++...+++.+||||.+ |..|+... ..||+||.++..
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45899999999999999999999 99999653 489999999875
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=2.2e-08 Score=69.73 Aligned_cols=42 Identities=31% Similarity=0.670 Sum_probs=34.2
Q ss_pred cccccccc-cccce----EEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 228 DLCVICLE-QEYNA----VFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
..|+||++ ...+. +++||||.+ |..|+... ..||+||.++..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 47999999 44443 568999999 99999775 479999999875
No 39
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.45 E-value=5.1e-08 Score=70.19 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=38.5
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
....|+||++-..+++.+||||.+ |..|+... ..||+||.++..
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 356899999999999999999999 99998753 579999999864
No 40
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.43 E-value=3.8e-08 Score=74.68 Aligned_cols=43 Identities=35% Similarity=0.853 Sum_probs=38.1
Q ss_pred ccccccccccccceEE-ecCCCcccCccchhcC-----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVF-FPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
...|+||++...+++. ++|||.| |..|+... ..||+||.++..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4589999999999999 9999999 99999763 589999999864
No 41
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=5.5e-08 Score=65.77 Aligned_cols=38 Identities=37% Similarity=0.914 Sum_probs=33.3
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-------CCCccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLC 264 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiC 264 (277)
+...|.||++...+.+.+||||.+ |..|+... ..||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 356899999999999999999998 99998763 579998
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.40 E-value=5.2e-08 Score=79.52 Aligned_cols=44 Identities=36% Similarity=0.708 Sum_probs=38.6
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~~ 271 (277)
...|+||++...+++.+||||.| |..|+... ..||+||.++...
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45899999999999999999999 99999764 3799999998753
No 43
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.39 E-value=8.5e-08 Score=73.53 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=38.4
Q ss_pred ccccccccccccceEEe-cCCCcccCccchhcC----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
...|+||++...+.+.+ ||||.+ |..|+... ..||+||..+..
T Consensus 15 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 45899999999999998 999999 99999764 689999999875
No 44
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.38 E-value=6.1e-08 Score=73.13 Aligned_cols=43 Identities=30% Similarity=0.702 Sum_probs=37.9
Q ss_pred ccccccccccccceEEe-cCCCcccCccchhcC----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
...|.||++...+.+.+ ||||.+ |..|+... ..||+||..+..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 45899999999999888 999999 99998763 589999998875
No 45
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.34 E-value=7e-08 Score=74.14 Aligned_cols=43 Identities=37% Similarity=0.819 Sum_probs=37.3
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC-------CCCccccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-------TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-------~~CPiCR~~i~~ 270 (277)
...|+||++...+++.+||||.+ |..|+... ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 34799999999999999999999 99998763 279999998874
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.33 E-value=2e-07 Score=72.64 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
.....|+||++...+++.+||||.+ |..|+... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456999999999999999999999 99999764 499999999876
No 47
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.33 E-value=1.2e-07 Score=78.30 Aligned_cols=44 Identities=30% Similarity=0.664 Sum_probs=38.0
Q ss_pred cccccccccccccceEEe-cCCCcccCccchhcC-----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
....|+||++...+++.+ ||||.| |..|+... ..||+||.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 455999999999999888 999999 99999763 479999999853
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.30 E-value=1.6e-07 Score=73.15 Aligned_cols=42 Identities=29% Similarity=0.564 Sum_probs=38.0
Q ss_pred ccccccccccccceEEe-cCCCcccCccchhcC--CCCcccccccc
Q 023757 227 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL--TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l--~~CPiCR~~i~ 269 (277)
...|+||++...+++.+ ||||.+ |..|+... ..||+||.++.
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTTBCSSSCCBCS
T ss_pred CCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhcCCCcCCCCcCc
Confidence 45899999999999999 999999 99999876 58999999985
No 49
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.24 E-value=2.3e-07 Score=71.91 Aligned_cols=44 Identities=34% Similarity=0.591 Sum_probs=38.6
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
+...|+||++...+++.+||||.+ |..|+... ..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345899999999999999999999 99998753 589999999875
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.22 E-value=2e-07 Score=71.92 Aligned_cols=42 Identities=26% Similarity=0.692 Sum_probs=33.5
Q ss_pred cccccccccccc------------------eEEecCCCcccCccchhcC---------CCCccccccccc
Q 023757 228 DLCVICLEQEYN------------------AVFFPCGHLCCCLICSSRL---------TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~l---------~~CPiCR~~i~~ 270 (277)
..|+||++.... +.++||||.| |..|+... ..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 489999987533 3478999999 99998652 489999998764
No 51
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.21 E-value=7.5e-07 Score=67.41 Aligned_cols=45 Identities=16% Similarity=0.043 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCC-CcccCccchhcC----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCG-HLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
.....|+||++-..++|.+||| |.+ |..|+... ..||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4467999999999999999999 999 99998763 589999998864
No 52
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.20 E-value=6.8e-07 Score=65.81 Aligned_cols=45 Identities=13% Similarity=0.000 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
.....|+||++-..+.+.+||||.+ |..|+... .+||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3457999999999999999999999 99998763 689999998764
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.18 E-value=7e-07 Score=67.83 Aligned_cols=45 Identities=13% Similarity=0.019 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
.....|+||++-..++|.+||||.+ |..|+... .+||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 3457999999999999999999998 99998763 589999998864
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.17 E-value=3.4e-07 Score=71.95 Aligned_cols=43 Identities=33% Similarity=0.817 Sum_probs=37.0
Q ss_pred ccccccccccccce-------EEecCCCcccCccchhcC----CCCccccccccc
Q 023757 227 PDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
...|.||++...+. +.++|||.+ |..|+... ..||+||..+..
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCcc
Confidence 45899999987766 889999999 99999763 589999999874
No 55
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=5.1e-07 Score=65.78 Aligned_cols=42 Identities=33% Similarity=0.689 Sum_probs=31.4
Q ss_pred cccccccccccc--------------eEEe-cCCCcccCccchhcC----CCCccccccccc
Q 023757 228 DLCVICLEQEYN--------------AVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ 270 (277)
Q Consensus 228 ~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~l----~~CPiCR~~i~~ 270 (277)
..|.||++...+ .+.+ +|||.| +..|+... .+||+||+++..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcch
Confidence 467887775533 4444 599999 99999863 689999998754
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.09 E-value=7.2e-07 Score=70.00 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=39.5
Q ss_pred cccccccccccccce-------EEecCCCcccCccchhcC----CCCccccccccc--eeecc
Q 023757 226 MPDLCVICLEQEYNA-------VFFPCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~--~~~~f 275 (277)
+...|.||++...+. +.++|||.+ |..|+... +.||+||.++.. +.++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 345899999876654 888999999 99999763 799999999875 45554
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.08 E-value=4.6e-07 Score=73.10 Aligned_cols=43 Identities=26% Similarity=0.564 Sum_probs=37.7
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRI 268 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i 268 (277)
.....|+||++-..+.+.++|||.| |..|+... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 3456999999999999999999999 99999874 4899999975
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.08 E-value=1.4e-06 Score=76.93 Aligned_cols=45 Identities=16% Similarity=-0.023 Sum_probs=38.9
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
.....|+||++-..++|.+||||.+ |..|+... ..||+||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456999999999999999999999 99998753 359999999874
No 59
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.93 E-value=2.9e-06 Score=70.05 Aligned_cols=45 Identities=31% Similarity=0.575 Sum_probs=39.6
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
.+...|+||++...+++.+||||.+ |..|+... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 3456999999999999999999999 99999774 499999999876
No 60
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.88 E-value=3.1e-06 Score=64.96 Aligned_cols=42 Identities=31% Similarity=0.600 Sum_probs=33.0
Q ss_pred cccccccccccc------------------ceEEecCCCcccCccchhcC----CCCcccccccc
Q 023757 227 PDLCVICLEQEY------------------NAVFFPCGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~------------------~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
.+.|.||++... .++++||||.| +..|+... ..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 357889887543 25778999999 99999873 68999999853
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.86 E-value=1.6e-05 Score=66.53 Aligned_cols=45 Identities=16% Similarity=-0.034 Sum_probs=39.1
Q ss_pred ccccccccccccccceEEecCCCcccCccchhcC-----CCCccccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL-----TNCPLCRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l-----~~CPiCR~~i~~ 270 (277)
.....|+||++-..++|.+||||.+ |..|+... ..||+|+.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3467999999999999999999999 99998763 369999998864
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.70 E-value=5.2e-06 Score=64.81 Aligned_cols=42 Identities=31% Similarity=0.614 Sum_probs=0.4
Q ss_pred ccccccccccccc------------------eEEecCCCcccCccchhcC----CCCcccccccc
Q 023757 227 PDLCVICLEQEYN------------------AVFFPCGHLCCCLICSSRL----TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~ 269 (277)
.+.|.||++...+ ++.+||+|.| +..|+... ..||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 3589999986543 3346999999 99999873 58999999853
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=1.5e-05 Score=59.61 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=34.8
Q ss_pred ccccccccccccceEEec-CCCcccCccchhcC----------CCCcc--cccc
Q 023757 227 PDLCVICLEQEYNAVFFP-CGHLCCCLICSSRL----------TNCPL--CRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~l----------~~CPi--CR~~ 267 (277)
...|+||++-..++|.+| |||.| |..|+... ..||+ |+..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 568999999999999996 99999 99998653 38999 9855
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.52 E-value=4e-05 Score=57.60 Aligned_cols=45 Identities=22% Similarity=0.552 Sum_probs=34.4
Q ss_pred ccccccccccc-eEEecCCCcccCccchhc-----CCCCccccccccceeec
Q 023757 229 LCVICLEQEYN-AVFFPCGHLCCCLICSSR-----LTNCPLCRRRIDQVVRT 274 (277)
Q Consensus 229 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~-----l~~CPiCR~~i~~~~~~ 274 (277)
-|..|--.-.. ..++||.|++ |.+|+.. .+.||+|+.+|.++...
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 46667655443 5678999998 9999965 36899999999987654
No 65
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00014 Score=64.18 Aligned_cols=45 Identities=16% Similarity=0.305 Sum_probs=37.8
Q ss_pred ccccccccccccccceEEe-cCCCcccCccchhcC------CCCcc--ccccccc
Q 023757 225 VMPDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPL--CRRRIDQ 270 (277)
Q Consensus 225 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l------~~CPi--CR~~i~~ 270 (277)
.....|+||++...++|.. .|||.| |..|+... ..||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 3456999999999999975 999999 99999763 37999 9997754
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=6.2e-05 Score=54.65 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=34.7
Q ss_pred ccccccccccc--cceEEecCC-----CcccCccchhcC------CCCccccccccce
Q 023757 227 PDLCVICLEQE--YNAVFFPCG-----HLCCCLICSSRL------TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~l------~~CPiCR~~i~~~ 271 (277)
...|.||++.. .+.+++||+ |.+ ...|+... ..||+||..+...
T Consensus 15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45899999754 456678996 999 89999873 4899999988643
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.19 E-value=4.8e-05 Score=56.52 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=30.4
Q ss_pred ccccccccccccce---EEecCCCcccCccchhcC------------CCCcc--cccc
Q 023757 227 PDLCVICLEQEYNA---VFFPCGHLCCCLICSSRL------------TNCPL--CRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~l------------~~CPi--CR~~ 267 (277)
...|.||++..... .+.+|||.+ |..|.... ..||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 45899999875443 223899999 99997541 37999 9988
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.82 E-value=0.00047 Score=47.26 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=39.9
Q ss_pred ccccccccccccceEEe-cCCCcccCccchhcC----CCCccccccccc--eeecc
Q 023757 227 PDLCVICLEQEYNAVFF-PCGHLCCCLICSSRL----TNCPLCRRRIDQ--VVRTF 275 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l----~~CPiCR~~i~~--~~~~f 275 (277)
...|+||++-..+.++. +|||.+ |..|+... .+||+++.++.. ++++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 35899999999999999 999999 99999874 579999998864 44443
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.85 E-value=0.002 Score=43.90 Aligned_cols=43 Identities=30% Similarity=0.532 Sum_probs=32.1
Q ss_pred ccccccccccccceEEecCCCc----ccCccchhcC------CCCcccccccc
Q 023757 227 PDLCVICLEQEYNAVFFPCGHL----CCCLICSSRL------TNCPLCRRRID 269 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~l------~~CPiCR~~i~ 269 (277)
...|.||++...+..+.||.+. +.-..|.... ..||+|+..+.
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4589999987766667897642 2367888762 58999998764
No 70
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.54 E-value=0.065 Score=37.95 Aligned_cols=44 Identities=23% Similarity=0.500 Sum_probs=32.3
Q ss_pred ccccccccccccceE-EecCCCcccCccchhcC------CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAV-FFPCGHLCCCLICSSRL------TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~l------~~CPiCR~~i~~~ 271 (277)
...|.||++...... -..|+|.+ -..|+.+. .+||+||......
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 458999998554222 22899999 79999742 6899999987653
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=93.19 E-value=0.016 Score=52.89 Aligned_cols=44 Identities=20% Similarity=0.588 Sum_probs=32.9
Q ss_pred ccccccccccccc--------eEEecCCCcccCccchhcC---------------CCCccccccccce
Q 023757 227 PDLCVICLEQEYN--------AVFFPCGHLCCCLICSSRL---------------TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~l---------------~~CPiCR~~i~~~ 271 (277)
...|.||++.... +-..+|||.| ...|.... ..||.||.+|+..
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4589999975443 2234899999 89998651 3699999999853
No 72
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=85.90 E-value=0.74 Score=33.91 Aligned_cols=47 Identities=28% Similarity=0.712 Sum_probs=36.3
Q ss_pred cccccccccccccceEEecCCCcccCccchhcC----CCCccccccccceeec
Q 023757 226 MPDLCVICLEQEYNAVFFPCGHLCCCLICSSRL----TNCPLCRRRIDQVVRT 274 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l----~~CPiCR~~i~~~~~~ 274 (277)
....|..|.-..+..| .|.--++|-.|...| ..||||..++...+++
T Consensus 27 G~~nCKsCWf~~k~LV--~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 27 GPQFCKSCWFENKGLV--ECNNHYLCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCCCSSCSCCSSEE--ECSSCEEEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred CcccChhhccccCCee--eecchhhHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 3458999998888654 577555699999886 5899999988775543
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=82.23 E-value=0.26 Score=36.23 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=23.6
Q ss_pred ccccccccc-ccceEE--ecCCCcccCccchhc
Q 023757 228 DLCVICLEQ-EYNAVF--FPCGHLCCCLICSSR 257 (277)
Q Consensus 228 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~ 257 (277)
..|.||.+. ...++. ++|+|.+ |..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHH
Confidence 479999975 455665 8999998 9999875
No 74
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=80.70 E-value=3.3 Score=33.20 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=27.8
Q ss_pred cccccccccccc-----cceEEecCCCcccCccchhcCC-----CCcccccc
Q 023757 226 MPDLCVICLEQE-----YNAVFFPCGHLCCCLICSSRLT-----NCPLCRRR 267 (277)
Q Consensus 226 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~l~-----~CPiCR~~ 267 (277)
....|.+|.... .-.+-..|.|.+ |..|....+ .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 356999999863 334445777777 888875442 57788754
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=58.94 E-value=3.6 Score=35.29 Aligned_cols=43 Identities=23% Similarity=0.534 Sum_probs=30.1
Q ss_pred cccccccccccceEEe-cCCCcccCccchhcC------CCCccccccccce
Q 023757 228 DLCVICLEQEYNAVFF-PCGHLCCCLICSSRL------TNCPLCRRRIDQV 271 (277)
Q Consensus 228 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~l------~~CPiCR~~i~~~ 271 (277)
..|.+|.+--.....= .|+|.+ -..|.... ..||.|+.....-
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 4799999755433222 388887 78888652 4899999886653
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=57.45 E-value=2.6 Score=30.13 Aligned_cols=30 Identities=37% Similarity=0.803 Sum_probs=25.6
Q ss_pred ccccccccccccceEEecCC----CcccCccchhc
Q 023757 227 PDLCVICLEQEYNAVFFPCG----HLCCCLICSSR 257 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~ 257 (277)
...|.+|.++-.+.-|+-|- |.+ |..|...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~ 48 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRE 48 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHH
Confidence 45899999999999888885 888 9999875
No 77
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=50.32 E-value=42 Score=25.96 Aligned_cols=40 Identities=25% Similarity=0.548 Sum_probs=26.2
Q ss_pred cccccccccccc-----ceEEecCCCcccCccchhcC--------CCCcccccc
Q 023757 227 PDLCVICLEQEY-----NAVFFPCGHLCCCLICSSRL--------TNCPLCRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~-----~~~~~pCgH~~~C~~C~~~l--------~~CPiCR~~ 267 (277)
...|.+|..... ..+-.-|.|.+ |..|.... =.|-+|+..
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 468999997662 23334677776 88887643 157777753
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=36.09 E-value=12 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=26.1
Q ss_pred ccccccccccccceEEecCCCcccCccchhcC---CCCccccccccce
Q 023757 227 PDLCVICLEQEYNAVFFPCGHLCCCLICSSRL---TNCPLCRRRIDQV 271 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~l---~~CPiCR~~i~~~ 271 (277)
...|+.|...-. +. |..+.|..|.... ..||-|.++++..
T Consensus 32 ~~~CP~Cq~eL~----~~-g~~~hC~~C~~~f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 32 ELHCPQCQHVLD----QD-NGHARCRSCGEFIEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCBCSSSCSBEE----EE-TTEEEETTTCCEEEEEEECTTTCSBCEEE
T ss_pred cccCccCCCcce----ec-CCEEECccccchhhccccCcchhhHHHHH
Confidence 468999985422 11 3333478887664 5799998887754
No 79
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=35.17 E-value=1.1e+02 Score=21.25 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 023757 177 IRCILQRKRRWELR 190 (277)
Q Consensus 177 ~r~~~~~r~~~~~~ 190 (277)
...+..+|+-.+.+
T Consensus 35 ~~~i~DrrE~~kFE 48 (79)
T 2knc_B 35 LITIHDRKEFAKFE 48 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 80
>2hw2_A Rifampin ADP-ribosyl transferase; protein-antibiotic complex, ADP-ribosylation; HET: RFP; 1.45A {Mycobacterium smegmatis}
Probab=33.12 E-value=23 Score=27.67 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCCeEEEEeCCCCcccceeeeeeeEeecCcccccccccccccceeeeeeeeeecccCCCceEEEEEEEE
Q 023757 51 DGTGCVFVVGARGATGFALTVGSEVFEESGRSLVHGTLDYLQGLKMLGVKRIGRLLPTGTSLTVVGEAV 119 (277)
Q Consensus 51 d~~~~V~V~~~~~a~~~~l~~v~~~f~~~~~~~~~~~~~~~~g~~~~G~~~~E~vL~~G~~lt~vGe~~ 119 (277)
|+.++|.|+.|..+...|-+++..+|.-. -+..|+..| +|-+|||+.
T Consensus 67 eg~~RIYiVEPtG~fEdDPNvTdKkFPGN---------------PTrSYRS~~-------PLrIvgEv~ 113 (143)
T 2hw2_A 67 EGRGRIFIVEPEGAIEDDPNVTDKKLPGN---------------PTRSYRTRE-------PVWIVGELT 113 (143)
T ss_dssp SSCCEEEEEEESSCCEECGGGSSSSSSSC---------------TTCEEEESS-------CEEEEEEEC
T ss_pred CCCCeEEEEccCCCcccCCCccCCCCCCC---------------CccccccCC-------CcEEEEEec
Confidence 56789999999998755555555555433 356677665 688999953
No 81
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=31.88 E-value=18 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=17.1
Q ss_pred cCCCcccCccchhcCCCCccccccccceee
Q 023757 244 PCGHLCCCLICSSRLTNCPLCRRRIDQVVR 273 (277)
Q Consensus 244 pCgH~~~C~~C~~~l~~CPiCR~~i~~~~~ 273 (277)
.|||+.. . ..-..||+|..+-..+.+
T Consensus 143 ~CG~i~~--~--~~p~~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 143 ICGYTAV--D--EAPEYCPVCGAPKEKFVV 168 (170)
T ss_dssp TTCCEEE--S--CCCSBCTTTCCBGGGCEE
T ss_pred CCCCeeC--C--CCCCCCCCCCCCHHHcee
Confidence 5777763 1 222489999988776654
No 82
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=28.76 E-value=1.3e+02 Score=22.68 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=17.4
Q ss_pred ecccCCCceEEEEEEEEeCCCCCeEE
Q 023757 103 GRLLPTGTSLTVVGEAVKDDIGTVRI 128 (277)
Q Consensus 103 E~vL~~G~~lt~vGe~~~d~~g~~~i 128 (277)
...+++|+.+-+.|.+..- +|...|
T Consensus 77 ~~~~~~g~yVrV~G~l~~f-~g~~qi 101 (132)
T 3kdf_D 77 NTVVPPETYVKVAGHLRSF-QNKKSL 101 (132)
T ss_dssp -CCCCTTCEEEEEEEEEEE-TTEEEE
T ss_pred cccccCCCEEEEEEEEEeE-CCEEEE
Confidence 3567899999999997543 455433
No 83
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.45 E-value=6 Score=23.41 Aligned_cols=9 Identities=33% Similarity=1.209 Sum_probs=4.2
Q ss_pred Ccccccccc
Q 023757 261 CPLCRRRID 269 (277)
Q Consensus 261 CPiCR~~i~ 269 (277)
||+|...+.
T Consensus 8 CP~C~~~l~ 16 (34)
T 3mjh_B 8 CPQCMKSLG 16 (34)
T ss_dssp CTTTCCEES
T ss_pred CcHHHHHcC
Confidence 455544433
No 84
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=25.29 E-value=1.9e+02 Score=21.72 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=18.1
Q ss_pred ecccCCCceEEEEEEEEeCCCCCeEE
Q 023757 103 GRLLPTGTSLTVVGEAVKDDIGTVRI 128 (277)
Q Consensus 103 E~vL~~G~~lt~vGe~~~d~~g~~~i 128 (277)
...+++|+.+-+.|.+..- +|...|
T Consensus 82 ~~~~~~g~yVrV~G~v~~f-~g~~qi 106 (136)
T 4gop_B 82 ASEIRNNVYVRVLGTLKSF-QNRRSI 106 (136)
T ss_dssp CCSCCTTCEEEEEEEEEEE-TTEEEE
T ss_pred ccccCCCCEEEEEEEEEEe-CCEEEE
Confidence 4567899999999997543 455444
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=25.28 E-value=45 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.748 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 023757 226 MPDLCVICLEQ 236 (277)
Q Consensus 226 ~~~~C~iC~~~ 236 (277)
+...|.+|.+.
T Consensus 8 ~~~~C~vC~~~ 18 (61)
T 1mm2_A 8 HMEFCRVCKDG 18 (61)
T ss_dssp SCSSCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 35589999863
No 86
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=24.70 E-value=36 Score=22.76 Aligned_cols=19 Identities=21% Similarity=0.523 Sum_probs=11.6
Q ss_pred CccchhcC--CCCcccccccc
Q 023757 251 CLICSSRL--TNCPLCRRRID 269 (277)
Q Consensus 251 C~~C~~~l--~~CPiCR~~i~ 269 (277)
|..|+..+ +.|+.|..+|.
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~ 26 (77)
T 2egq_A 6 SGDCYKNFVAKKCAGCKNPIT 26 (77)
T ss_dssp CTTCCCSCCCCCCSSSCCCCC
T ss_pred chhHhchhhCccCcccCCccc
Confidence 56666553 46666666666
No 87
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.04 E-value=29 Score=28.38 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=16.9
Q ss_pred ecCCCcccCccchhcC-CCCccccccccceee
Q 023757 243 FPCGHLCCCLICSSRL-TNCPLCRRRIDQVVR 273 (277)
Q Consensus 243 ~pCgH~~~C~~C~~~l-~~CPiCR~~i~~~~~ 273 (277)
..|||+.. .... ..||+|..+-..+.+
T Consensus 159 ~~CG~~~~----g~~~p~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 159 RNCGYVHE----GTGAPELCPACAHPKAHFEL 186 (191)
T ss_dssp TTTCCEEE----EEECCSBCTTTCCBGGGEEE
T ss_pred CCCCCEee----CCCCCCCCCCCcCCHHHHHh
Confidence 35677763 1123 389999998665543
No 88
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=23.63 E-value=24 Score=25.55 Aligned_cols=44 Identities=30% Similarity=0.678 Sum_probs=28.9
Q ss_pred ccccccccccccc----eEEecCCCc--ccCccchhc-----CCCCccccccccc
Q 023757 227 PDLCVICLEQEYN----AVFFPCGHL--CCCLICSSR-----LTNCPLCRRRIDQ 270 (277)
Q Consensus 227 ~~~C~iC~~~~~~----~~~~pCgH~--~~C~~C~~~-----l~~CPiCR~~i~~ 270 (277)
...|.||-+..-. -+|+-|... .+|..|+.- .+.||.|+.+..+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 4599999986321 255555422 248888754 2689999988763
No 89
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.31 E-value=31 Score=23.47 Aligned_cols=19 Identities=21% Similarity=0.502 Sum_probs=11.0
Q ss_pred CccchhcC--CCCcccccccc
Q 023757 251 CLICSSRL--TNCPLCRRRID 269 (277)
Q Consensus 251 C~~C~~~l--~~CPiCR~~i~ 269 (277)
|..|+..+ +.|..|..+|.
T Consensus 6 C~~~y~~~~~~~C~~C~~~I~ 26 (82)
T 2ehe_A 6 SGPCYDNTFANTCAECQQLIG 26 (82)
T ss_dssp CCCCCCCCCSCBCTTTCCBCC
T ss_pred chhHhCcccCCcCccCCCccc
Confidence 55565543 45666666665
No 90
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.69 E-value=34 Score=23.11 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=8.2
Q ss_pred CccchhcC--CCCcccccccc
Q 023757 251 CLICSSRL--TNCPLCRRRID 269 (277)
Q Consensus 251 C~~C~~~l--~~CPiCR~~i~ 269 (277)
|..|+..+ +.|+.|..+|.
T Consensus 6 C~~cy~~~~~~~C~~C~~~I~ 26 (80)
T 2cuq_A 6 SGPCYENKFAPRCARCSKTLT 26 (80)
T ss_dssp CCCCCCCCSSCCCTTTCCCCC
T ss_pred cHHHHccccCCcCCCCCCEec
Confidence 44444432 34444444443
No 91
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=22.55 E-value=38 Score=23.06 Aligned_cols=31 Identities=29% Similarity=0.496 Sum_probs=21.9
Q ss_pred cccccccccccccceEEecC-CCcccCccchhcC
Q 023757 226 MPDLCVICLEQEYNAVFFPC-GHLCCCLICSSRL 258 (277)
Q Consensus 226 ~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~l 258 (277)
+..-|.||.+. ....-+-| |-++ |..|...+
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~ 38 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLY-CARCFREG 38 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHH
T ss_pred CCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHH
Confidence 35589999987 44555677 6666 88887653
No 92
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.52 E-value=30 Score=30.79 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=30.0
Q ss_pred ccccccccccccceEEe----cCCC-cccCccchhcC----CCCcccccc
Q 023757 227 PDLCVICLEQEYNAVFF----PCGH-LCCCLICSSRL----TNCPLCRRR 267 (277)
Q Consensus 227 ~~~C~iC~~~~~~~~~~----pCgH-~~~C~~C~~~l----~~CPiCR~~ 267 (277)
...|++|-+.+.-.++. .=|+ ...|.-|.... .+||.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 56999999999877665 2453 23488887663 489999876
No 93
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=21.50 E-value=38 Score=25.22 Aligned_cols=22 Identities=23% Similarity=0.597 Sum_probs=13.2
Q ss_pred cCCCcccCccchhcCCCCcccccc
Q 023757 244 PCGHLCCCLICSSRLTNCPLCRRR 267 (277)
Q Consensus 244 pCgH~~~C~~C~~~l~~CPiCR~~ 267 (277)
.||+.| + .=...-..||.|+..
T Consensus 72 ~CG~~F-~-~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 72 KCGFVF-K-AEINIPSRCPKCKSE 93 (105)
T ss_dssp TTCCBC-C-CCSSCCSSCSSSCCC
T ss_pred hCcCee-c-ccCCCCCCCcCCCCC
Confidence 688887 2 101112589999975
No 94
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=21.30 E-value=23 Score=19.91 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=7.2
Q ss_pred CCcccccccc
Q 023757 260 NCPLCRRRID 269 (277)
Q Consensus 260 ~CPiCR~~i~ 269 (277)
.||+|+....
T Consensus 5 ~CpvCk~q~P 14 (28)
T 2jvx_A 5 CCPKCQYQAP 14 (28)
T ss_dssp ECTTSSCEES
T ss_pred cCccccccCc
Confidence 6899987543
No 95
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.30 E-value=39 Score=21.20 Aligned_cols=14 Identities=36% Similarity=0.736 Sum_probs=10.6
Q ss_pred CCccccccccceee
Q 023757 260 NCPLCRRRIDQVVR 273 (277)
Q Consensus 260 ~CPiCR~~i~~~~~ 273 (277)
.||+|...-..+.+
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 79999987666654
Done!