BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023760
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
pdb|3D4J|B Chain B, Crystal Structure Of Human Mevalonate Diphosphate
Decarboxylase
Length = 400
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 128/272 (47%), Positives = 167/272 (61%), Gaps = 18/272 (6%)
Query: 7 QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 66
+S LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q+ E HW +L ++I VVS+
Sbjct: 145 ESDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQVAPESHWPELRVLILVVSA 204
Query: 67 RQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 126
+K T ST GMR SVETS LL+ RA+ VVP R+ +M I+ DF SFAQLT DSNQFH
Sbjct: 205 EKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFH 264
Query: 127 AVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 186
A CLDT PPI Y+N S RII V R+N G +VAYTFDAGPNAV+ + +A E +
Sbjct: 265 ATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLDDTVA-EFV 323
Query: 187 QRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVN 245
+ FPP S D + G++ + PL E+ ++ + G V
Sbjct: 324 AAVWHGFPPGSNG--------------DTFLKGLQ-VRPAPLSAELQAALAMEPTPGGVK 368
Query: 246 YFICTRPGGGPVLLSDDSKALLNPKSGLPKEA 277
Y I T+ G GP +L D LL P GLPK A
Sbjct: 369 YIIVTQVGPGPQILDDPCAHLLGP-DGLPKPA 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
pdb|3F0N|B Chain B, Mus Musculus Mevalonate Pyrophosphate Decarboxylase
Length = 414
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 166/272 (61%), Gaps = 22/272 (8%)
Query: 7 QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSS 66
+ LS +AR+GSGSACRSL+GGFV+W +G++ +G DS+A Q+ E HW L I+I VVS+
Sbjct: 159 EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSA 218
Query: 67 RQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 126
+K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M IQ DF FAQLT DSNQFH
Sbjct: 219 DKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFH 278
Query: 127 AVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELL 186
A CLDT PPI Y+NDTS RII V R+N G +VAYTFDAGPNAV+ +A E +
Sbjct: 279 ATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGPNAVIFTLEDTVA-EFV 337
Query: 187 QRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALP--LPPEIN-NISAQKYSGD 243
+ FPP + GDK +K ++ P L E+ + + G
Sbjct: 338 AAVRHSFPPAAN--------GDKF---------LKGLQVAPVLLSDELKAALVVEPSPGG 380
Query: 244 VNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 275
V Y I T+ G GP +L D LL + GLP+
Sbjct: 381 VQYIIATQVGPGPQVLDDTHDHLLG-QDGLPQ 411
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate
Decarboxylase At 2.3 Angstrom Resolution
Length = 416
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 117/280 (41%), Positives = 156/280 (55%), Gaps = 27/280 (9%)
Query: 3 LKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIA 62
L ++ S++S IAR+GSGSACRSLFGG+V W GK +G DS AVQ+ D W +
Sbjct: 158 LPQSTSEISRIARKGSGSACRSLFGGYVAWEXGKAEDGHDSXAVQIADSSDWPQXKACVL 217
Query: 63 VVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADS 122
VVS +K+ SST G + +V TS L + R + VVPKR +AI DF++FA+ T DS
Sbjct: 218 VVSDIKKDVSSTQGXQLTVATSELFKERIEHVVPKRFEVXRKAIVEKDFATFAKETXXDS 277
Query: 123 NQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRK 180
N FHA CLD+ PPIFY NDTS RIIS+ N+ G VAYTFDAGPNAVL +A N
Sbjct: 278 NSFHATCLDSFPPIFYXNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVLYYLAENES 337
Query: 181 IATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQ-- 238
+ +L P DK + +EA E +N +A+
Sbjct: 338 KLFAFIYKLFGSVPG-----------WDKKFT-------TEQLEAFNHQFESSNFTAREL 379
Query: 239 --KYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 276
+ DV I T+ G GP + +++L++ K+GLPKE
Sbjct: 380 DLELQKDVARVILTQVGSGP---QETNESLIDAKTGLPKE 416
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
pdb|2HKE|B Chain B, Mevalonate Diphosphate Decarboxylase From Trypanosoma
Brucei
Length = 380
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 5/218 (2%)
Query: 5 ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV 64
++ + +S +AR GSGSACRS FGGFV W G++ +GSD +A Q VDE HW ++ ++ AV+
Sbjct: 131 KSTTNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVL 190
Query: 65 SSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQ 124
QK+ SST GM++S++TS L++ R E VP+R+ AI+ DF++FA++ +S+
Sbjct: 191 KGAQKDVSSTKGMQQSLKTSPLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDD 250
Query: 125 FHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATE 184
+C T P I Y + S+ +I V+ +N G +AYTFDAG N L + E
Sbjct: 251 LQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTALAYTFDAGANCFLFVLKEDLP-E 309
Query: 185 LLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKD 222
+ L+ FP T + GD+ +L + + D
Sbjct: 310 AVAMLMEHFP----TPFEKFFFGDRELLEKVKVVSLPD 343
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT5|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase
pdb|3QT6|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT6|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor Dpgp
pdb|3QT7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|3QT7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp
pdb|4DPT|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DPT|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Inhibitor
6-Fmvapp And Atpgs
pdb|4DU7|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
pdb|4DU7|B Chain B, Crystal Structure Of Staphylococcus Epidermidis Mevalonate
Diphosphate Decarboxylase Complexed With Substrate
Mevalonate Diphosphate
Length = 332
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVI 59
++L + + LS +AR+GSGSA RS+FGGF +W ++G+ + ++ W DL +
Sbjct: 127 LSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSM 183
Query: 60 IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 119
I V++++ K+ SS +GM + +TS Q+ V + + + +EA++N DF ++
Sbjct: 184 IFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDHV-DEDLNEAKEAVKNQDFQRLGEVIE 242
Query: 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARN 178
A+ + HA L PP Y+ S+ ++ VE+ R P +T DAGPN VL+ +
Sbjct: 243 ANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTMDAGPNVKVLVEKK 300
Query: 179 RKIATELLQRLLFFF 193
K A ++++ L F
Sbjct: 301 NKQA--VMEQFLKVF 313
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|3QT8|B Chain B, Crystal Structure Of Mutant S192a Staphylococcus
Epidermidis Mevalonate Diphosphate Decarboxylase
Complexed With Inhibitor 6- Fmvapp
pdb|4DPU|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPU|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor 6-Fmvapp And Atpgs
pdb|4DPX|A Chain A, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPX|B Chain B, Crystal Structure Of S192a Staphylococcus Epidermidis
Mevalonate Diphosphate Decarboxylase
pdb|4DPY|A Chain A, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DPY|B Chain B, Crystal Structure Of Staphylococcus Epidermidis S192a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 107/195 (54%), Gaps = 10/195 (5%)
Query: 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVI 59
++L + + LS +AR+GSGSA RS+FGGF +W ++G+ + ++ W DL +
Sbjct: 127 LSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSM 183
Query: 60 IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 119
I V++++ K+ S+ +GM + +TS Q+ V + + + +EA++N DF ++
Sbjct: 184 IFVVINNQSKKVSARSGMSLTRDTSRFYQYWLDHV-DEDLNEAKEAVKNQDFQRLGEVIE 242
Query: 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARN 178
A+ + HA L PP Y+ S+ ++ VE+ R P +T DAGPN VL+ +
Sbjct: 243 ANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTMDAGPNVKVLVEKK 300
Query: 179 RKIATELLQRLLFFF 193
K A ++++ L F
Sbjct: 301 NKQA--VMEQFLKVF 313
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK2|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Monoclinic Form)
pdb|2HK3|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
pdb|2HK3|B Chain B, Crystal Structure Of Mevalonate Diphosphate Decarboxylase
From Staphylococcus Aureus (Orthorhombic Form)
Length = 331
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 101/200 (50%), Gaps = 6/200 (3%)
Query: 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVII 60
++++ + LS +AR GSGSA RS++GGF +W G + S AV L +DL +I
Sbjct: 126 LDMQLSDKDLSRLARIGSGSASRSIYGGFAEWEKGY--SDETSYAVPLESNHFEDDLAMI 183
Query: 61 IAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCA 120
V++ K+ S GM + TS Q+ + + + + + AIQ+ DF ++
Sbjct: 184 FVVINQHSKKVPSRYGMSLTRNTSRFYQYWLDH-IDEDLAEAKAAIQDKDFKRLGEVIEE 242
Query: 121 DSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRK 180
+ + HA L ++PP Y+ S+ +++ V R G P +T DAGPN V I +K
Sbjct: 243 NGLRMHATNLGSTPPFTYLVQESYDVMALVHE-CREAGYP-CYFTMDAGPN-VKILVEKK 299
Query: 181 IATELLQRLLFFFPPNSETD 200
+++ +LL F N D
Sbjct: 300 NKQQIIDKLLTQFDNNQIID 319
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|C Chain C, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|D Chain D, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|E Chain E, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|F Chain F, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|G Chain G, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DPW|H Chain H, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Mevalonate Diphosphate And Atpgs
pdb|4DU8|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
pdb|4DU8|B Chain B, Crystal Structure Of Staphylococcus Epidermidis D283a
Mevalonate Diphosphate Decarboxylase Complexed With
Inhibitor Dpgp
Length = 332
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 106/195 (54%), Gaps = 10/195 (5%)
Query: 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVI 59
++L + + LS +AR+GSGSA RS+FGGF +W ++G+ + ++ W DL +
Sbjct: 127 LSLNLSDTDLSRLARRGSGSASRSIFGGFAEW---EKGHDDLTSYAHGINSNGWEKDLSM 183
Query: 60 IIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTC 119
I V++++ K+ SS +GM + +TS Q+ V + + + +EA++N DF ++
Sbjct: 184 IFVVINNQSKKVSSRSGMSLTRDTSRFYQYWLDH-VDEDLNEAKEAVKNQDFQRLGEVIE 242
Query: 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNA-VLIARN 178
A+ + HA L PP Y+ S+ ++ VE+ R P +T AGPN VL+ +
Sbjct: 243 ANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQC-RKANLP-CYFTMAAGPNVKVLVEKK 300
Query: 179 RKIATELLQRLLFFF 193
K A ++++ L F
Sbjct: 301 NKQA--VMEQFLKVF 313
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
pdb|3LTO|B Chain B, Crystal Structure Of A Mevalonate Diphosphate
Decarboxylase From Legionella Pneumophila
Length = 323
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 5 ENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV 64
+ Q+QLS R GSGS+CRS + + W G A+ L + DL+ + V+
Sbjct: 137 DEQAQLS---RLGSGSSCRSFYAPWALW------TGDKVSAIDLP----YKDLLHQVIVI 183
Query: 65 SSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQ 124
SS++KE S + V+TS + R+ E + + A +N D++S Q+ +
Sbjct: 184 SSQEKEIPSRVAHK-LVKTSPFYETRS-ERAEANLKLLLNAFENKDWTSIYQICWHEFLD 241
Query: 125 FHAVCLDTSPPIFYMNDTSHRIISYVER-WNRSVGSPQVAYTFDAGPNAVLIARN 178
H + P Y+ D + I+S +E+ WN P V T DAGPN L+ R+
Sbjct: 242 XHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVV--TXDAGPNVHLLYRS 294
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From
Streptococcus Pyogenes
Length = 317
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 106 IQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYT 165
++ ++F QLT A++ HA +PP Y+ S++ V+ R G +T
Sbjct: 220 LKTNNFEKVGQLTEANALAXHATTKTANPPFSYLTKESYQAXEAVKEL-RQEGFA-CYFT 277
Query: 166 FDAGPNAVLIARNRKIATELLQRL 189
DAGPN ++ + +A +L +RL
Sbjct: 278 XDAGPNVKVLCLEKDLA-QLAERL 300
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 242 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 272
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Alpha-Subunits From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 190 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 228
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli At Room Temperature
pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
From Escherichia Coli
Length = 268
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 190 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 228
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPL 193
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 242 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 272
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 242 GDVNYFICTRPGGGPVLLS-DDSKALLNPKSG 272
G+ NYF T+ GG PV+ DD+K ++N +
Sbjct: 280 GNANYFHYTKQGGSPVIDGIDDAKEMVNTRQA 311
>pdb|1XCF|A Chain A, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
pdb|1XCF|B Chain B, Crystal Structure Of P28lY173F TRYPTOPHAN SYNTHASE ALPHA-
Subunits From Escherichia Coli
Length = 268
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 190 LFFFPPNSETDL----NSYVLGDKSILRDAGIDGMKDIEALPL 228
+F PPN++ DL SY G +L AG+ G ++ ALPL
Sbjct: 151 IFICPPNADDDLLRQIASYGRGFTYLLSRAGVTGAENRAALPL 193
>pdb|1FXW|F Chain F, Crystal Structure Of The Recombinant Alpha1ALPHA2
Catalytic Heterodimer Of Bovine Brain
Platelet-Activating Factor Acetylhydrolase Ib.
pdb|1VYH|A Chain A, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|B Chain B, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|E Chain E, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|F Chain F, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|I Chain I, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|J Chain J, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|M Chain M, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|N Chain N, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|Q Chain Q, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|R Chain R, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 229
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG 169
+ N+F C D P + ++ D+ +++ E W R + SP A F G
Sbjct: 26 SQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIW-RELFSPLHALNFGIG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,148,494
Number of Sequences: 62578
Number of extensions: 327486
Number of successful extensions: 598
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 21
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)