Query 023760
Match_columns 277
No_of_seqs 198 out of 513
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:26:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2833 Mevalonate pyrophospha 100.0 6.6E-90 1.4E-94 642.2 23.0 257 1-275 138-395 (395)
2 PLN02407 diphosphomevalonate d 100.0 8.9E-71 1.9E-75 521.9 22.8 195 1-196 138-334 (343)
3 TIGR01240 mevDPdecarb diphosph 100.0 4.5E-60 9.7E-65 443.4 22.7 188 1-194 118-305 (305)
4 COG3407 MVD1 Mevalonate pyroph 100.0 2.1E-57 4.6E-62 428.2 20.8 191 1-198 123-313 (329)
5 PRK01212 homoserine kinase; Pr 98.6 1.9E-06 4E-11 79.9 16.4 163 1-193 114-280 (301)
6 PF08544 GHMP_kinases_C: GHMP 98.2 3.1E-06 6.6E-11 63.6 6.0 82 102-194 1-84 (85)
7 TIGR00549 mevalon_kin mevalona 98.2 6.8E-05 1.5E-09 68.1 14.9 148 1-176 111-272 (273)
8 PRK00128 ipk 4-diphosphocytidy 98.0 2.3E-05 4.9E-10 72.3 9.2 158 1-194 117-274 (286)
9 TIGR01220 Pmev_kin_Gr_pos phos 98.0 0.00028 6E-09 67.9 16.6 176 1-191 137-344 (358)
10 PRK14611 4-diphosphocytidyl-2- 97.9 7.2E-05 1.6E-09 69.1 10.2 142 1-178 113-254 (275)
11 TIGR00191 thrB homoserine kina 97.8 0.00087 1.9E-08 62.6 15.1 153 1-181 113-269 (302)
12 PRK03926 mevalonate kinase; Pr 97.3 0.018 4E-07 53.3 16.4 159 1-192 108-282 (302)
13 PTZ00298 mevalonate kinase; Pr 97.3 0.025 5.5E-07 53.6 17.5 170 1-195 127-312 (328)
14 PRK02534 4-diphosphocytidyl-2- 97.2 0.012 2.5E-07 55.4 14.3 169 1-195 119-293 (312)
15 PLN02451 homoserine kinase 96.9 0.059 1.3E-06 52.5 16.6 169 1-194 167-343 (370)
16 PRK03817 galactokinase; Provis 96.7 0.088 1.9E-06 50.2 15.6 94 88-194 232-329 (351)
17 TIGR00144 beta_RFAP_syn beta-R 96.5 0.2 4.4E-06 47.8 16.6 169 1-193 115-302 (324)
18 PRK03188 4-diphosphocytidyl-2- 96.2 0.087 1.9E-06 49.1 12.3 159 1-191 116-275 (300)
19 PRK01123 shikimate kinase; Pro 96.1 0.19 4.2E-06 46.6 13.9 148 1-192 108-266 (282)
20 TIGR01920 Shik_kin_archae shik 96.0 0.15 3.2E-06 47.1 12.8 146 1-191 97-253 (261)
21 PRK00555 galactokinase; Provis 95.8 0.39 8.5E-06 46.4 15.0 85 97-194 255-341 (363)
22 COG0083 ThrB Homoserine kinase 95.6 0.59 1.3E-05 44.8 15.3 161 1-191 110-274 (299)
23 PRK05322 galactokinase; Provis 95.0 1.4 3E-05 43.0 16.1 86 97-194 279-366 (387)
24 COG1907 Predicted archaeal sug 94.3 1.9 4E-05 41.6 14.6 181 1-194 104-290 (312)
25 TIGR00154 ispE 4-diphosphocyti 93.7 1.3 2.8E-05 41.6 12.3 157 1-194 119-276 (293)
26 PRK13412 fkp bifunctional fuco 92.8 0.92 2E-05 49.7 11.0 175 1-191 759-950 (974)
27 TIGR00131 gal_kin galactokinas 92.4 4.3 9.3E-05 39.3 14.2 86 98-196 279-367 (386)
28 PRK14613 4-diphosphocytidyl-2- 91.7 5.2 0.00011 37.7 13.4 162 4-195 127-289 (297)
29 PTZ00299 homoserine kinase; Pr 91.1 7.5 0.00016 37.6 14.2 168 1-194 115-301 (336)
30 COG1577 ERG12 Mevalonate kinas 90.9 15 0.00032 35.4 15.8 165 1-192 116-295 (307)
31 PRK00343 ipk 4-diphosphocytidy 88.1 7.2 0.00016 36.2 11.1 35 1-36 120-154 (271)
32 PRK05101 galactokinase; Provis 87.9 6.1 0.00013 38.5 11.0 93 90-194 264-361 (382)
33 PRK14614 4-diphosphocytidyl-2- 86.9 12 0.00026 34.8 11.8 148 1-191 118-268 (280)
34 PRK14616 4-diphosphocytidyl-2- 85.9 25 0.00053 32.7 13.4 160 1-196 116-277 (287)
35 PRK14608 4-diphosphocytidyl-2- 81.8 32 0.0007 32.2 12.4 153 1-193 123-279 (290)
36 PLN02677 mevalonate kinase 79.7 24 0.00053 34.8 11.3 105 8-128 183-310 (387)
37 PRK14612 4-diphosphocytidyl-2- 77.6 21 0.00047 32.9 9.7 138 15-194 128-266 (276)
38 TIGR01219 Pmev_kin_ERG8 phosph 68.4 44 0.00095 33.9 10.1 34 72-112 282-315 (454)
39 PRK14615 4-diphosphocytidyl-2- 57.8 1.7E+02 0.0036 27.5 12.4 165 1-191 121-286 (296)
40 PRK14609 4-diphosphocytidyl-2- 57.1 1.6E+02 0.0036 27.2 11.3 33 1-35 115-148 (269)
41 cd06006 R3H_unknown_2 R3H doma 51.9 53 0.0011 24.2 5.5 33 139-176 25-57 (59)
42 PF00288 GHMP_kinases_N: GHMP 44.7 13 0.00028 26.8 1.3 28 1-28 32-67 (67)
43 COG0153 GalK Galactokinase [Ca 42.2 48 0.001 33.2 5.2 94 89-195 271-369 (390)
44 PLN02865 galactokinase 41.9 1.6E+02 0.0034 29.6 8.9 95 88-195 297-396 (423)
45 PF05400 FliT: Flagellar prote 38.1 1E+02 0.0023 22.4 5.5 53 102-154 1-53 (84)
46 KOG1576 Predicted oxidoreducta 36.7 54 0.0012 31.8 4.5 10 245-254 97-106 (342)
47 COG1154 Dxs Deoxyxylulose-5-ph 35.1 2.4E+02 0.0051 30.1 9.1 88 116-207 364-476 (627)
48 COG4829 CatC1 Muconolactone de 33.6 21 0.00046 28.8 1.0 22 120-142 59-80 (98)
49 KOG4743 Cyclin-dependent kinas 33.2 14 0.0003 33.6 -0.1 11 18-28 15-25 (195)
50 cd07922 CarBa CarBa is the A s 30.1 42 0.0009 26.4 2.1 32 100-131 38-69 (81)
51 PF02624 YcaO: YcaO-like famil 29.4 1.9E+02 0.0042 26.6 6.9 47 112-159 126-173 (332)
52 PF03410 Peptidase_M44: Protei 28.5 50 0.0011 34.3 2.9 27 168-196 163-189 (590)
53 COG1947 IspE 4-diphosphocytidy 28.3 2.3E+02 0.005 27.2 7.2 155 1-194 118-274 (289)
54 PRK03057 hypothetical protein; 28.2 81 0.0018 28.2 3.9 63 53-119 88-170 (180)
55 TIGR02764 spore_ybaN_pdaB poly 27.8 70 0.0015 27.4 3.4 11 161-171 7-17 (191)
56 PF04788 DUF620: Protein of un 27.5 55 0.0012 30.7 2.8 73 20-116 26-98 (245)
57 PHA03081 putative metalloprote 26.9 55 0.0012 34.0 2.9 27 168-196 163-189 (595)
58 PF11159 DUF2939: Protein of u 26.8 71 0.0015 24.8 3.0 27 98-124 16-42 (95)
59 PRK10770 peptidyl-prolyl cis-t 23.4 2E+02 0.0043 27.9 6.0 101 9-118 193-310 (413)
60 PF07304 SRA1: Steroid recepto 22.9 1E+02 0.0022 26.7 3.5 52 96-155 91-143 (157)
61 PF05139 Erythro_esteras: Eryt 22.8 1.1E+02 0.0025 28.7 4.1 60 129-195 29-90 (346)
62 COG2605 Predicted kinase relat 21.9 7.7E+02 0.017 24.3 12.6 150 25-192 156-313 (333)
63 PF01627 Hpt: Hpt domain; Int 21.7 1.4E+02 0.003 21.5 3.6 25 94-118 9-36 (90)
64 PF10685 KGG: Stress-induced b 21.6 76 0.0016 19.3 1.7 17 4-20 4-20 (23)
65 KOG3282 Uncharacterized conser 21.5 3.6E+02 0.0078 24.5 6.7 40 130-171 121-160 (190)
66 TIGR02884 spore_pdaA delta-lac 21.2 1.1E+02 0.0023 27.5 3.4 26 160-192 37-62 (224)
67 PRK08655 prephenate dehydrogen 20.8 2.4E+02 0.0053 28.0 6.1 32 95-126 241-272 (437)
No 1
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=100.00 E-value=6.6e-90 Score=642.18 Aligned_cols=257 Identities=56% Similarity=0.885 Sum_probs=237.4
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
|||+.++++||+|||+||||||||+|||||.|++|+.+||+||+|+|++|+.|||+|+++|+|||+.+|+++||+||+++
T Consensus 138 y~l~~~~~els~iAR~GSGSACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~s 217 (395)
T KOG2833|consen 138 YGLDDSPEELSRIARQGSGSACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRS 217 (395)
T ss_pred hCCCCCHHHHHHHHhccCchhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
|+||.||++|++++||+||.+|++||++|||+.|+++||+|||||||+||||+|||+||||+|++||++||+||+..|.+
T Consensus 218 veTS~L~qhRi~~vVP~Ri~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t 297 (395)
T KOG2833|consen 218 VETSQLLQHRIESVVPQRIQQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGT 297 (395)
T ss_pred HHHhHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhccCCCcccccCCCCCcccc-cccccc
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQK 239 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~ 239 (277)
+|+||||||||++||+++ ++..++++.+.+.||+.++|+ ..|.+|+.+.++..+.. .+++ .+..
T Consensus 298 ~vAYTFDAGPNAvl~~l~-e~~~~~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~-----------~~~~~~l~~-- 362 (395)
T KOG2833|consen 298 RVAYTFDAGPNAVLIVLE-ENVSQLLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES-----------SSIKDSLGS-- 362 (395)
T ss_pred eEEEEecCCCceEEEEhh-hhHHHHHHHHHHhcCCCCCcc-ceeeeccccccCccccc-----------cchhhhccc--
Confidence 999999999999999996 556689999999999999887 78988865443333222 2333 4443
Q ss_pred CCCCcceEEEcCCCCCCeecCCCCccccCCCCCCCC
Q 023760 240 YSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 275 (277)
Q Consensus 240 ~~~~v~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~p~ 275 (277)
.++|+|||+|+||.||+ |.+++++|||+ .|+||
T Consensus 363 -~~~vs~~I~t~vG~GP~-l~~~~~~Li~~-~GlPk 395 (395)
T KOG2833|consen 363 -QGGVSYIILTRVGGGPK-LQEQNESLIDP-SGLPK 395 (395)
T ss_pred -cCCeeEEEEecCCCCCc-ccCchhhhcCC-CCCCC
Confidence 39999999999999999 77889999999 59997
No 2
>PLN02407 diphosphomevalonate decarboxylase
Probab=100.00 E-value=8.9e-71 Score=521.88 Aligned_cols=195 Identities=81% Similarity=1.243 Sum_probs=183.5
Q ss_pred CCCCCC-hHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~~-~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
|+++++ .++||+|||+||||||||+|||||.|++|..+||+||||+|+.++.|||||+++||||++++|+||||+|||+
T Consensus 138 ~~~~~~~~~~ls~lAr~GSGSa~rS~~Gg~v~w~~G~~~d~~ds~A~~i~~~~~~~dl~~~i~vv~~~~K~vsSt~GM~~ 217 (343)
T PLN02407 138 MNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSDSIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRE 217 (343)
T ss_pred hCCCCCchHHHHHHHhccChHHHHHhhCCeEEecCCCCCCCCceeEEECCCccCCccceEEEEEEcCCcCCCCchHHHHH
Confidence 688999 9999999999999999999999999999988899999999999888999999999999999999999999999
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
||+|||||++|++++++++|++|++||++|||++||||+|+|||+|||+||+|+|||+||||+|++||++||+||++.|.
T Consensus 218 tv~TSp~~~~w~~~~~~~~~~~~~~Ai~~~Df~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~ 297 (343)
T PLN02407 218 SVETSPLLQHRAKEVVPKRILQMEEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGT 297 (343)
T ss_pred hhhcChhHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCC
Confidence 99999999999998789999999999999999999999999999999999999999999999999999999999887787
Q ss_pred CeEEEEeccCCCeEEeeecccCHHH-HHHHHHhcCCCC
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATE-LLQRLLFFFPPN 196 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~-~~~~l~~~f~~~ 196 (277)
+.|||||||||||||||++ ++.++ |++.+.+.|++.
T Consensus 298 ~~v~yT~DAGPNv~vl~~~-~~~~~~v~~~~~~~~~~~ 334 (343)
T PLN02407 298 PQVAYTFDAGPNAVLIALN-RKVAAQLLQRLLYYFPPS 334 (343)
T ss_pred ccEEEEecCCCCEEEEECh-hhhHHHHHHHHHHhcCCC
Confidence 4499999999999999996 55555 997777766554
No 3
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=100.00 E-value=4.5e-60 Score=443.45 Aligned_cols=188 Identities=39% Similarity=0.611 Sum_probs=179.2
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||++++..+|+++||+||||||||+|||||.|.+|. |++||+|+|+.++.||++|+++|+|+++.+|+||||+||+++
T Consensus 118 ~~l~l~~~eL~~lA~~gsGsa~~s~~GG~v~~~~g~--~~~~s~a~~i~~~~~~~~~~~~v~vv~~~~k~vsSt~gm~~~ 195 (305)
T TIGR01240 118 YQLPLDTSELSRIARKGSGSACRSLFGGYVAWEKGK--DDHSSAAVQVADDSDWPQXAMCVLVVNDIKKDVSSRQGMQLT 195 (305)
T ss_pred cCCCCCHHHHHHHHHHhcCCeeeeeecCeEEEEcCC--CCCCeeEEECCCccccccceEEEEEcCCCCCCCCCHHHHHHh
Confidence 588999999999999999999999999999999994 889999999998889999999999999999999999999999
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
+.|||+|+.|+++ +++++.+|++||+++||+.||+++|+|+|+|||+||+++|||+||||+|++||++|++||+ .|.+
T Consensus 196 ~~ts~~~~~~v~~-~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~-~g~~ 273 (305)
T TIGR01240 196 VATSELFKEWIEH-VVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQ-GGTI 273 (305)
T ss_pred hhcCccHHHHHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHh-CCCc
Confidence 9999999999997 6878999999999999999999999999999999999999999999999999999999975 6887
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
|||||||||||||||++ ++.++|++.|.+.|.
T Consensus 274 -~~~T~DAGpNv~vl~~~-~~~~~v~~~~~~~~~ 305 (305)
T TIGR01240 274 -CYFTMDAGPNVKVLYLA-ENLSKLFEFIYKLFG 305 (305)
T ss_pred -EEEEEcCCCCEEEEEcc-ccHHHHHHHHHHhcC
Confidence 99999999999999994 778899999988773
No 4
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=100.00 E-value=2.1e-57 Score=428.21 Aligned_cols=191 Identities=38% Similarity=0.613 Sum_probs=180.7
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
|+|++|..+||++||+||||||||+||||+.|.+|. |.|+.++|+.+...|+++++++++++..+|+||||+|||.|
T Consensus 123 ~~~~~d~~~lS~~AR~gSGSa~RS~~Gg~~~W~~~~---g~~~~~~~~~~~~~~~e~~~i~~~~~~~~k~vsS~~gm~~~ 199 (329)
T COG3407 123 YDLDLDDEFLSRIARLGSGSASRSIFGGFVLWEKGE---GEDSAAEQLFRLDLWKELAMIVLVISPKKKKVSSREGMQLT 199 (329)
T ss_pred hccCCCHHHHHHHHHHhccchhhhhcCCeeEeccCC---CCccceeeeccccCccccceEEEEEccccCCCCchHHHHHH
Confidence 578999999999999999999999999999999996 89999999999889999999999999999999999999999
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
++|||||++|+++ +.+++++|+++|+++||++|++++|+|+++|||+||++.|||+|||++|++||++||++|+. |.+
T Consensus 200 ~~tS~~y~~w~~~-~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~-g~~ 277 (329)
T COG3407 200 AETSPFYDAWLEH-SEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKE-GNA 277 (329)
T ss_pred HHcChHHHHHHHH-HHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhc-CCc
Confidence 9999999999997 68888999999999999999999999999999999999999999999999999999999765 666
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCCCC
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSE 198 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~ 198 (277)
|||||||||||+|+|++ +++.++++.+...+.....
T Consensus 278 -~~fT~DaGPnV~v~~~~-~~l~~~~~~~~~~~~~~~~ 313 (329)
T COG3407 278 -VYFTMDAGPNVKVITLE-ENLIDLLEILKTLECIDGS 313 (329)
T ss_pred -eEEEEcCCCceEEEEec-ccHHHHHHHHhhcccccce
Confidence 99999999999999995 7788899999988876533
No 5
>PRK01212 homoserine kinase; Provisional
Probab=98.62 E-value=1.9e-06 Score=79.90 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=103.7
Q ss_pred CCCCCChHHHHHHHHhhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHH
Q 023760 1 MNLKENQSQLSAIARQGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 77 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM 77 (277)
+|++++.++|.++|+.+.+| .+.++|||++.+..|. ....+++... +++++ +++.+ ...+++.+..
T Consensus 114 ~~~~l~~~eL~~~a~~~e~~~ddv~~~l~GG~~~~~~g~-----g~~~~~~~~~---~~~~~-vlv~p--~~~~sT~~a~ 182 (301)
T PRK01212 114 AGLPLSKEELLQLATEGEGHPDNVAPALLGGLVLALEEN-----GVISVKIPVF---DDLKW-VVAIP--NIELSTAEAR 182 (301)
T ss_pred cCCCCCHHHHHHHHHHhcCCHHHHHHHHhCCEEEEEECC-----ceEEEEecCC---CCeEE-EEEEC--CCcCCHHHHH
Confidence 57889999999999999985 5699999999986332 2345555322 23333 33333 3566555554
Q ss_pred hhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHh-ccCCCCeEeeehhHHHHHHHHHHHHHH
Q 023760 78 RESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC-LDTSPPIFYMNDTSHRIISYVERWNRS 156 (277)
Q Consensus 78 ~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~-l~t~Ppi~Y~n~~S~~ii~~V~~~nr~ 156 (277)
+ ......-++..+.+ ..++..+..|+.++|++.|++.. . +.||... .... +....+++. + ++
T Consensus 183 ~-~l~~~~~~~~~~~~--~~~~~~l~~al~~~d~~~~~~~~-~--~~~~~~~~~~~~-------p~~~~i~~~---~-~~ 245 (301)
T PRK01212 183 A-VLPKQYSLKDAVFN--SSRAALLVAALYTGDYELAGRAM-K--DVLHEPYRAKLI-------PGFAEVRQA---A-LE 245 (301)
T ss_pred H-hCcCcCCHHHHHHH--HHHHHHHHHHHhhCCHHHHHHHh-c--hhheHHhHHhhC-------CCHHHHHHH---H-HH
Confidence 3 33333233444443 35778899999999999999875 3 3445432 1112 232333333 3 33
Q ss_pred cCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcC
Q 023760 157 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 157 ~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
.|-. .+.---+||.|+.++.+++. +++.+.+++.|
T Consensus 246 ~Ga~-g~~~SGsGptv~~l~~~~~~-~~~~~~l~~~~ 280 (301)
T PRK01212 246 AGAL-GAGISGAGPTVFALCDKEDA-EKVADALQKAF 280 (301)
T ss_pred CCCe-EEEEEchhhheeEEeccccH-HHHHHHHHHhh
Confidence 5654 67788999999999985444 67888888775
No 6
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=98.22 E-value=3.1e-06 Score=63.60 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEecc--CCCeEEeeecc
Q 023760 102 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVLIARNR 179 (277)
Q Consensus 102 m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DA--GPNv~i~~~~~ 179 (277)
|++||+++||+.|+++...+.+. .+..|....+..+.+.++.+ ++.|.. .+....| ||.|+.+|.++
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~-~~~Ga~-~~~~sGsG~G~~v~~l~~~~ 69 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN---------EPENYREVLTPEIDELKEAA-EENGAL-GAKMSGSGGGPTVFALCKDE 69 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---------HHHHHTTHHHHHHHHHHHHH-HHTTES-EEEEETTSSSSEEEEEESSH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh---------cchHHHHHcCHHHHHHHHHH-HHCCCC-ceecCCCCCCCeEEEEECCH
Confidence 78999999999999999988775 23334555566666666666 456754 7888999 99999999556
Q ss_pred cCHHHHHHHHHhcCC
Q 023760 180 KIATELLQRLLFFFP 194 (277)
Q Consensus 180 ~~~~~~~~~l~~~f~ 194 (277)
+..+++.+.+++.|+
T Consensus 70 ~~~~~v~~~l~~~~~ 84 (85)
T PF08544_consen 70 DDAERVAEALREHYK 84 (85)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhCC
Confidence 777889999998875
No 7
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=98.17 E-value=6.8e-05 Score=68.12 Aligned_cols=148 Identities=18% Similarity=0.231 Sum_probs=90.4
Q ss_pred CCCCCChHHHHHHHHhh--------ccc-cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQG--------SGS-ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G--------SGS-AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||+++++.+|..+|+.. ||. .+.|+|||++.|..+.. . .++..+ ++ .-+++++.+ ++.
T Consensus 111 ~~~~~~~~~l~~~a~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~~~---~----~~~~~~---~~--~~lvl~~tg-~~~ 177 (273)
T TIGR00549 111 FGSELSKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEKGEG---E----FTKLIS---LD--GYFVIADTG-VSG 177 (273)
T ss_pred hCCCCCHHHHHHHHHHHHHHhCCCCchHhHHHHhcCCeEEEEcCCC---c----eeeccC---CC--eEEEEEECC-CCC
Confidence 46788999999999964 333 56899999999876531 1 122111 12 334455554 344
Q ss_pred CchHHHhhh----hhcCc-cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHH
Q 023760 72 SSTTGMRES----VETSL-LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 146 (277)
Q Consensus 72 sSt~GM~~t----v~TSp-l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~i 146 (277)
+ |..+.+. ...+| .++...++ ..+...++++|++++|++.|+++...+-..||+.... ++.--++
T Consensus 178 ~-T~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~~vs--------~p~l~~l 247 (273)
T TIGR00549 178 S-TKEAVARVRQLLERFPELIDSIMDA-IGELTLEAKAALQDGDVESLGELMNINQGLLKALGVS--------HPKLDQL 247 (273)
T ss_pred c-HHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCC--------cHHHHHH
Confidence 4 4434322 22333 44445543 4667888999999999999999987666667664221 3333344
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCCCeEEee
Q 023760 147 ISYVERWNRSVGSPQVAYTFDAGPNAVLIA 176 (277)
Q Consensus 147 i~~V~~~nr~~g~~~v~yT~DAGPNv~i~~ 176 (277)
++.. + +.|-. .+--.=||+-=+++.
T Consensus 248 ~~~~---~-~~Ga~-gaklsGaG~GG~~i~ 272 (273)
T TIGR00549 248 VETA---R-KAGAL-GAKLTGAGGGGCMIA 272 (273)
T ss_pred HHHH---H-HCCCc-eeeeccCCCCceEEe
Confidence 4443 2 34644 566778888766554
No 8
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.05 E-value=2.3e-05 Score=72.30 Aligned_cols=158 Identities=17% Similarity=0.194 Sum_probs=95.5
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|++++.++|.++|+..+.-.+-++|||++.-. |. +. ..+++.. .+++. ++++.+ ...++ |.-+...
T Consensus 117 ~~~~l~~~~l~~~a~~~g~dv~~~~~Gg~~~~~-~~---g~--~~~~~~~---~~~~~-~vv~~p--~~~~~-T~~~~~~ 183 (286)
T PRK00128 117 WNLGLSLEELAEIGLEIGSDVPFCIYGGTALAT-GR---GE--KITPLKS---PPSCW-VVLAKP--DIGVS-TKDVYKN 183 (286)
T ss_pred hcCCcCHHHHHHHHHHhCCCCCeEeeCCeEEEe-cC---Cc--ccccCCC---CCCcE-EEEEcC--CCCCC-HHHHHhc
Confidence 478899999999998877788899999997643 32 11 1233421 13444 333322 24444 3333222
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
+.. .+. ....+..+..+++++|++.++++. .| .|.......+|. -. +.++.+ ++.|-.
T Consensus 184 ~~~-----~~~---~~~~~~~~~~~l~~~d~~~~~~~~-~n--~l~~~~~~~~p~-------l~---~l~~~~-~~~Ga~ 241 (286)
T PRK00128 184 LDL-----DKI---SHPDTEKLIEAIEEGDYQGICANM-GN--VLENVTLKKYPE-------IA---KIKERM-LKFGAD 241 (286)
T ss_pred Ccc-----ccc---cCcchHHHHHHHhcCCHHHHHHhc-cC--cHHHHHHhhChH-------HH---HHHHHH-HhcCCC
Confidence 211 111 123577889999999999999863 33 334433333322 22 333334 345665
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
.+..--+||.++.++..++..+++...+.+.++
T Consensus 242 -g~~lSGsG~sv~~l~~~~~~~~~i~~~l~~~~~ 274 (286)
T PRK00128 242 -GALMSGSGPTVFGLFDDESRAQRIYNGLKGFCK 274 (286)
T ss_pred -eeEEcccCccEEEEeCCHHHHHHHHHHhHhhcC
Confidence 788999999999999854556677877776543
No 9
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=98.03 E-value=0.00028 Score=67.93 Aligned_cols=176 Identities=13% Similarity=0.104 Sum_probs=108.7
Q ss_pred CCCCCChHHHHHHHHh------hcccc---ccccCCCeeeeccCCCC-----------------CCCCceeEecCCCCCC
Q 023760 1 MNLKENQSQLSAIARQ------GSGSA---CRSLFGGFVKWILGKEG-----------------NGSDSLAVQLVDEEHW 54 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~------GSGSA---cRSi~GGfV~W~~G~~~-----------------dg~dS~A~~v~~~~hw 54 (277)
||+++++.++.++|.. |.+|. .-|+|||++.+.+.... +-.....+++..+
T Consensus 137 ~~~~l~~~~l~~lA~~~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~--- 213 (358)
T TIGR01220 137 YDLELSNDEIFKLAMLATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAP--- 213 (358)
T ss_pred hCCCCCHHHHHHHHHHHHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCC---
Confidence 5788899999999943 34443 48999999998755310 0011123444322
Q ss_pred ccceEEEEEEcCCCCCCCchHHHhh----hhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhc
Q 023760 55 NDLVIIIAVVSSRQKETSSTTGMRE----SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCL 130 (277)
Q Consensus 55 ~~l~~ii~vvs~~~K~vsSt~GM~~----tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l 130 (277)
++++ ++|+..+ ++.+|++.++. ....++.|+.++++ ..+-..++++||+++||+.|+++...+-.-||++--
T Consensus 214 ~~~~--l~v~~tg-~~~~T~~~v~~V~~~~~~~~~~~~~~l~~-~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~ 289 (358)
T TIGR01220 214 KGLT--LLIGWTG-SPASTASLVSDVHRRKWRGSASYQRFLET-STDCVESAITAFETGDITSLQKEIRRNRQELARLDD 289 (358)
T ss_pred CCCE--EEEEeCC-CCcCcHHHHHHHHHHhhcChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc
Confidence 1233 3344444 34445554431 12334667777876 678889999999999999999999999999998855
Q ss_pred cCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCCC--eEEeeecccCHHHHHHHHHh
Q 023760 131 DTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN--AVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 131 ~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPN--v~i~~~~~~~~~~~~~~l~~ 191 (277)
.+ ++-+-++...++++..++... . +=.-=||=- +..++.++.+.+++.+++.+
T Consensus 290 ~~--~~~vs~~~l~~li~~a~~~ga-~-----aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~ 344 (358)
T TIGR01220 290 EV--GVGIETEKLKALCDAAEAYGG-A-----AKPSGAGGGDCGIAILDAEADITHVRQRWET 344 (358)
T ss_pred cc--CCCcCCHHHHHHHHHHhhcCc-e-----ecCCCCCCcCEEEEEeCCchhHHHHHHHHHH
Confidence 44 666778888888888765421 1 112334444 33355434444555555543
No 10
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.93 E-value=7.2e-05 Score=69.14 Aligned_cols=142 Identities=15% Similarity=0.127 Sum_probs=89.7
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|++++..+|.++|+.+++.+++++|||++.+... |. ..+++... +++. ++++++. ..+ ||.-+...
T Consensus 113 ~~~~l~~~~l~~la~~i~~D~~~~~~Gg~~~~~~~----g~--~~~~~~~~---~~~~-~vv~~p~--~~~-sT~~~~~~ 179 (275)
T PRK14611 113 LGNPLSEEELFELASSISADAPFFLKGGFALGRGI----GD--KLEFLEKP---ISRE-ITLVYPN--IKS-STGRVYSK 179 (275)
T ss_pred hCCCCCHHHHHHHHHHhCCCCCeeecCCeEEEecc----Cc--eeEECCcC---CCcE-EEEEeCC--CCC-ChHHHHHh
Confidence 57899999999999999999999999999887532 11 22344211 1222 3333332 333 34333222
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
+ -+.+.. .+.++..+.++|.++|++.+.+..+ |.||..++..+|.+. .+.+. + +..|.
T Consensus 180 l-----~~~~~~--~~~~~~~l~~~l~~~~~~~~~~~~~---n~l~~~~~~~~P~l~-------~~~~~---l-~~~~~- 237 (275)
T PRK14611 180 V-----TKQILT--NKEDLNIIISLLREGEEKKIEEVIE---NTLGEIALELYPEIK-------EVYRF---L-EYLGY- 237 (275)
T ss_pred c-----chhhcc--CcchHHHHHHHHHcCCHHHHHHhcC---CcccHHHHHHCHHHH-------HHHHH---H-HhCCC-
Confidence 1 111121 3567888999999999998887754 789999976666532 33332 2 22332
Q ss_pred eEEEEeccCCCeEEeeec
Q 023760 161 QVAYTFDAGPNAVLIARN 178 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~ 178 (277)
.++--=+||-++.++..
T Consensus 238 -~~~~SGSG~tvf~l~~~ 254 (275)
T PRK14611 238 -KPFVSGSGSSVYVFGKP 254 (275)
T ss_pred -CEEEeCccccceeEeCC
Confidence 34466789999999863
No 11
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=97.79 E-value=0.00087 Score=62.63 Aligned_cols=153 Identities=15% Similarity=0.174 Sum_probs=89.1
Q ss_pred CCCCCChHHHHHHHHhhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHH
Q 023760 1 MNLKENQSQLSAIARQGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 77 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM 77 (277)
+|++++.++|-++|..+.|+ .+-++|||++.|.... ..-...++... ++++++++ ++ ..++++.+..
T Consensus 113 ~~~~l~~~el~~~a~~~E~h~Dnv~~~l~GG~~~~~~~~----~~~~~~~~~~~---~~~~~vl~-~p--~~~~sT~~a~ 182 (302)
T TIGR00191 113 CGLPLSKERLLDYASELEGHPDNVAPALLGGFQLAFVED----DKLEVLKIPIF---SKLDWVLA-IP--NIEVSTAEAR 182 (302)
T ss_pred cCCCcCHHHHHHHHHHhcCCcccHHHHhccCEEEEEEcC----CceEEEEeCCC---CCEEEEEE-EC--CCcccHHHHH
Confidence 57889999999999999875 6789999999885331 11122222211 34444443 33 3556555543
Q ss_pred hhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccC-CCCeEeeehhHHHHHHHHHHHHHH
Q 023760 78 RESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDT-SPPIFYMNDTSHRIISYVERWNRS 156 (277)
Q Consensus 78 ~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t-~Ppi~Y~n~~S~~ii~~V~~~nr~ 156 (277)
+ .+...--++.-+.. -.++..+..|+.++|. .+++.++.| ++|.-.... .|.+ .++++.. ++
T Consensus 183 ~-~lp~~~~~~~~v~~--~~~~~~l~~al~~~~~-~l~~~~~~d--~l~e~~~~~l~p~l-------~~i~~~~----~~ 245 (302)
T TIGR00191 183 A-VLPKAYPRQDLVFN--LSHLAGLVHAIYQKKP-DLGAIMMKD--RIHQPYRESLIPNL-------FKIKQAA----LE 245 (302)
T ss_pred H-hCcccCCHHHHHHH--HHHHHHHHHHHHcCCH-HHHHHHccc--ccchhhHhhhCCCH-------HHHHHHH----HH
Confidence 3 22111111222221 2456678899999975 477777664 555443322 2322 2333322 34
Q ss_pred cCCCeEEEEeccCCCeEEeeecccC
Q 023760 157 VGSPQVAYTFDAGPNAVLIARNRKI 181 (277)
Q Consensus 157 ~g~~~v~yT~DAGPNv~i~~~~~~~ 181 (277)
.|-. .++.--+||.+..++.+++.
T Consensus 246 ~Ga~-g~~lSGsGptv~al~~~~~~ 269 (302)
T TIGR00191 246 KGAY-GITISGSGPTILAMADEEFA 269 (302)
T ss_pred CCCe-EEEEEchhhhheEEecchhh
Confidence 5665 78899999999999985443
No 12
>PRK03926 mevalonate kinase; Provisional
Probab=97.27 E-value=0.018 Score=53.28 Aligned_cols=159 Identities=23% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCCCCChHHHHHHHH------hhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIAR------QGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR------~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++..+|.++|. +|.+| .+-++|||++.+..+. ++.. +++.+++ + ..+ +++
T Consensus 108 ~~~~l~~~~l~~la~~~E~~~~G~~sg~D~~~~~~Gg~~~~~~~~----------~l~~----~~~~~vl-~-~~~-~~~ 170 (302)
T PRK03926 108 LGLGLSLEEIAKLGHKVELLVQGAASPTDTYVSTMGGFVTIPDRK----------KLPF----PECGIVV-G-YTG-SSG 170 (302)
T ss_pred hCCCCCHHHHHHHHHHHHHHHcCCCchHHHHHHhcCCeEEEcCCC----------cCCC----CCceEEE-E-ECC-CCC
Confidence 578899999999874 34444 3689999999886331 3321 2333322 3 333 444
Q ss_pred CchHHHhhhhhc----C-ccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHH
Q 023760 72 SSTTGMRESVET----S-LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 146 (277)
Q Consensus 72 sSt~GM~~tv~T----S-pl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~i 146 (277)
+ |.-+...+.. . ..+....+. +.+-...+..|++++|++.|+++.. .++.| ++. +-+.++.-..+
T Consensus 171 s-T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~--~~~~~---~~~---~~~~~p~l~~l 240 (302)
T PRK03926 171 S-TKELVANVRKLKEEYPELIEPILSS-IGKISEKGEELILSGDYVSLGELMN--INQGL---LDA---LGVSTKELSEL 240 (302)
T ss_pred c-HHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHH--HHHHH---HHh---cCCCCHHHHHH
Confidence 4 4444332211 1 111112221 2233445678899999999999973 23322 332 12234444444
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhc
Q 023760 147 ISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 147 i~~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~ 192 (277)
++.. ++.|-. .+--.=||| .+..++.+ +..+++.+.+.+.
T Consensus 241 ~~~~----~~~ga~-ga~lSGaG~Gg~v~~l~~~-~~~~~~~~~~~~~ 282 (302)
T PRK03926 241 IYAA----RTAGAL-GAKITGAGGGGCMVALAAP-EKQSEVATAIKIA 282 (302)
T ss_pred HHHH----HhCCCc-eeeeccCCCCCEEEEEecc-ccHHHHHHHHHhc
Confidence 4443 234544 556778999 67777764 5566777777653
No 13
>PTZ00298 mevalonate kinase; Provisional
Probab=97.25 E-value=0.025 Score=53.59 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=91.7
Q ss_pred CCCCCChHHHHHHHHh------hccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQ------GSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~------GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++.++|..+|.. |..| ..=++|||++....+. +. ...+++... +++.+ +++... .++
T Consensus 127 ~~~~ls~~el~~~a~~~E~~~~g~~sG~D~~~~~~Gg~~~~~~~~---g~-~~~~~l~~~---~~~~l--vv~~~~-~~~ 196 (328)
T PTZ00298 127 YQLNLTEEEVNLSAFVGEGGYHGTPSGADNTAATYGGLISYRRVN---GK-SVFKRIAFQ---QPLYL--VVCSTG-ITA 196 (328)
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHcCCeEEEecCC---Cc-cceeEecCC---CCCeE--EEEECC-Cch
Confidence 5788999999999765 4443 2237999998765432 22 223444322 23333 233332 344
Q ss_pred CchHHHhhhhh----cCc-cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHH
Q 023760 72 SSTTGMRESVE----TSL-LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRI 146 (277)
Q Consensus 72 sSt~GM~~tv~----TSp-l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~i 146 (277)
++.+..+ .+. ..| .+. ++.........++..|++++|++.|+++...+ |..+.+- . ...|.--.+
T Consensus 197 sT~~~~~-~v~~~~~~~p~~~~-~~~~~~~~~~~~~~~al~~~d~~~lg~~m~~~----~~~l~~~--~--v~~p~l~~l 266 (328)
T PTZ00298 197 STTKVVG-DVRKLKENQPTWFN-RLLENYNACVSEAKEALQKGNLFRVGELMNAN----HDLCQKL--T--VSCRELDSI 266 (328)
T ss_pred hHHHHHH-HHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHh--C--CCcHHHHHH
Confidence 3333321 121 111 111 11111233456778899999999999975433 3222211 1 134443444
Q ss_pred HHHHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhcCCC
Q 023760 147 ISYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 147 i~~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
++.. ++.|-. .+.-.=||| .+..++.+++..+++...+.+.++.
T Consensus 267 ~~~~----~~~Ga~-gaklSGsG~GG~v~al~~~~~~a~~~~~~l~~~~~~ 312 (328)
T PTZ00298 267 VQTC----RTYGAL-GAKMSGTGRGGLVVALAASEDQRDAIAKAVRARCPE 312 (328)
T ss_pred HHHH----HhCCCc-eeEeccCCCCeEEEEEecchhhHHHHHHHHHHHhhh
Confidence 4433 335654 566677999 4666776446666788888887654
No 14
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=97.19 E-value=0.012 Score=55.38 Aligned_cols=169 Identities=15% Similarity=0.108 Sum_probs=93.2
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeec-cCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHh-
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWI-LGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR- 78 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~-~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~- 78 (277)
|+++++.++|-.+|...++=.+=+++||++.+. +|+ ..+++.....| . +++++... ..+++.+.-+
T Consensus 119 ~~~~l~~~~l~~~a~~~g~dv~~~~~GG~~~~~~~g~-------~~~~~~~~~~~---~-~vv~~~p~-~~~~T~~a~~~ 186 (312)
T PRK02534 119 WGLGLTQPELESLAAELGSDVPFCIAGGTQLCFGRGE-------ILEPLPDLDGL---G-VVLAKYPS-LSVSTPWAYKT 186 (312)
T ss_pred hCCCcCHHHHHHHHHHhCCCCcEEeECCeEEEECCCC-------EeEECCCCCCc---E-EEEEECCC-CCccHHHHHHH
Confidence 578899999999985544334567999997775 332 13555433233 3 33332233 3355443321
Q ss_pred -hhhhcCcc-HHHHHhhh--hhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHH
Q 023760 79 -ESVETSLL-LQHRAKEV--VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWN 154 (277)
Q Consensus 79 -~tv~TSpl-~~~r~~~~--v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~n 154 (277)
+.+...++ .+...... .-.+...+..++.++|++.+++. ++|-++.... +..-+|-+.++.++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~~d~~~~~~~-~~n~l~~~~~------------~~~~~i~~~~~~l~ 253 (312)
T PRK02534 187 YRQQFGDTYLSDEEDFEQRRQALRSGPLLQAISAKDPPPIAQL-LHNDLEKVVL------------PEYPQVAKLLELLS 253 (312)
T ss_pred HhhhcccccccCcccccccccccchhHHHHhhhccCHHHHHHh-hhCchHHHhH------------hcChHHHHHHHHHH
Confidence 11111111 11100000 01234568899999999999863 2333332222 12334445555553
Q ss_pred HHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCC
Q 023760 155 RSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 155 r~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
.+.|-. .+.--=+||-++.++.+++..+++...+++.++.
T Consensus 254 ~~~Ga~-~~~lSGsGptv~~l~~~~~~a~~~~~~l~~~~~~ 293 (312)
T PRK02534 254 SLPGCL-GTMMSGSGPTCFALFESQEQAEQALEQVREAFAD 293 (312)
T ss_pred hccCCC-eeEEECcCcceEEEeCCHHHHHHHHHHHHHHhcc
Confidence 245655 5667789999999998645566777777776643
No 15
>PLN02451 homoserine kinase
Probab=96.90 E-value=0.059 Score=52.47 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCCCChHHHHHHHHhhccc--------cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCC
Q 023760 1 MNLKENQSQLSAIARQGSGS--------ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETS 72 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGS--------AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vs 72 (277)
+|++++.++|-++|....+- ++=|+|||++.-...+ ...-...++.....| . ++++++. .++
T Consensus 167 ~g~~ls~~eL~~la~~~E~~v~g~h~Dnva~a~~GG~v~~~~~~---~~~~~~~~~p~~~~~---~-~Vlv~P~--~~~- 236 (370)
T PLN02451 167 FGSPLGKDDLVLAGLESEAKVSGYHADNIAPALMGGFVLIRSYE---PLHLIPLRFPSAKDL---F-FVLVSPD--FEA- 236 (370)
T ss_pred hCCCCCHHHHHHHHHHHhchhcCCCccchhHhhcCCEEEEEecC---CCeEEEeecCCCCCe---E-EEEEcCC--CCc-
Confidence 47889999999999866441 1126899997653221 111122222211223 3 3444442 333
Q ss_pred chHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHH
Q 023760 73 STTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVER 152 (277)
Q Consensus 73 St~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~ 152 (277)
||.-|...+...--+...+.. -.++..+..++.++|++.+++.... .++|.-- ..=+.+...++++.
T Consensus 237 sT~~ar~~lp~~~~~~~~v~~--~~~~~~l~~al~~~d~~~l~~~m~n--D~~~e~~------r~~~~P~l~~l~~~--- 303 (370)
T PLN02451 237 PTKKMRAALPKEIPMKHHVWN--CSQAAALVAAILQGDAVLLGEALSS--DKIVEPT------RAPLIPGMEAVKKA--- 303 (370)
T ss_pred cHHHHHHHHhhhcchhhHHHH--HHHHHHHHHHHHcCCHHHHHHHHHH--HHHhHHH------HhhhCccHHHHHHH---
Confidence 566665433222111112211 1356678899999999999986433 2233221 11112222333333
Q ss_pred HHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 153 WNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 153 ~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
+ ++.|-. .+.--=+||-++.++.+++..+++.+.+++.|.
T Consensus 304 ~-~~~GA~-ga~mSGSGptvfal~~~~~~a~~i~~~l~~~~~ 343 (370)
T PLN02451 304 A-LEAGAY-GCTISGAGPTAVAVIDDEEKGEEVGERMVEAFR 343 (370)
T ss_pred H-HHCCCe-EEEEEccchheEEEEcCHHHHHHHHHHHHHHHH
Confidence 3 345654 455667899999999865566778888887663
No 16
>PRK03817 galactokinase; Provisional
Probab=96.66 E-value=0.088 Score=50.21 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHhhhhh--hhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEE
Q 023760 88 QHRAKEVVP--KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYT 165 (277)
Q Consensus 88 ~~r~~~~v~--~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT 165 (277)
..|+.+++. +++.++..|++++|++.||++...+...||.-.- .-.+..-.+++.. ++.|-. -+--
T Consensus 232 ~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~~-------~s~p~ld~l~~~a----~~~Gal-Gakl 299 (351)
T PRK03817 232 RKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNYE-------VSCEELDFFVEFA----LELGAY-GARL 299 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcC-------CCcHHHHHHHHHH----HHcCCC-EEEE
Confidence 345444433 4678899999999999999999876667775421 1234433444444 234664 4444
Q ss_pred eccC--CCeEEeeecccCHHHHHHHHHhcCC
Q 023760 166 FDAG--PNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 166 ~DAG--PNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
.=|| |-+..++++ +..+++...+.+.|.
T Consensus 300 sGaG~Gg~vlal~~~-~~~~~~~~~l~~~~~ 329 (351)
T PRK03817 300 TGAGFGGSAIALVDK-GKFESIGEELLEEYK 329 (351)
T ss_pred ecCCCCeEEEEEEch-HHHHHHHHHHHHHHH
Confidence 5778 999999884 666678888877653
No 17
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=96.46 E-value=0.2 Score=47.78 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=92.7
Q ss_pred CCCCCChHHHHHHHHhhccccc---cccCCCeeeec-----cCCCC-------CCCCceeEecCCCCCCccceEEEEEEc
Q 023760 1 MNLKENQSQLSAIARQGSGSAC---RSLFGGFVKWI-----LGKEG-------NGSDSLAVQLVDEEHWNDLVIIIAVVS 65 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAc---RSi~GGfV~W~-----~G~~~-------dg~dS~A~~v~~~~hw~~l~~ii~vvs 65 (277)
+|++++.++|-.+|-+|-+|++ =++||||+.-. ..... ........++..+ .| + ++++++
T Consensus 115 ~~~~ls~~el~~~a~~ge~s~~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~---~-~vlviP 189 (324)
T TIGR00144 115 YGMKFTAREIAHIVGRGGTSGIGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-DW---N-IILAIP 189 (324)
T ss_pred hCCCCCHHHHHHHHhCCCCCccceeeeeeCCEEEECCcccccccccCcccccCCCCCCeEEecCCC-Cc---E-EEEEec
Confidence 4789999999999999988654 68999997652 11110 0011123333222 45 4 455556
Q ss_pred CCCCCCCchHHHhhh--hhcC-ccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhcc-CCCCeEeeeh
Q 023760 66 SRQKETSSTTGMRES--VETS-LLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLD-TSPPIFYMND 141 (277)
Q Consensus 66 ~~~K~vsSt~GM~~t--v~TS-pl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~-t~Ppi~Y~n~ 141 (277)
+.+ +|.+++.. .... |+-..-+.+...--+.+|..|+.++|++.|++-. .|-... ..+ -.+| |..+
T Consensus 190 ~~~----~t~~are~~~lp~~~~i~~~dv~~~~~~~l~~l~~al~~~d~~~~~~~l-~d~~~~---~f~~~~~~--~r~~ 259 (324)
T TIGR00144 190 EID----SVSGRREVNIFQKYCPVPLRDVERICHLILMKMMPAVVEGDLDAFGESV-NEIQGL---GFKKIERE--LQDP 259 (324)
T ss_pred CCC----CCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHhh---cchhhhcc--ccCH
Confidence 544 44444332 3333 2221114433222345569999999999999965 443321 111 2223 2222
Q ss_pred hHHHHHHHHHHHHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcC
Q 023760 142 TSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 142 ~S~~ii~~V~~~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
.--.+ +..+++. . .+.--=+||.|..+|.+ + .+++.+.+.+.|
T Consensus 260 li~~~---~~~l~~a---~-g~~iSGsGPTv~al~~~-~-~~~~~~~~~~~~ 302 (324)
T TIGR00144 260 LIKRI---IDSMISA---P-GAGMSSFGPTVYAVTDE-K-PGNIAGAVADIF 302 (324)
T ss_pred HHHHH---HHHHHhc---c-CceecCCCCeEEEEecC-c-hHHHHHHHHHHh
Confidence 22333 3333222 1 34456799999999984 3 446777777655
No 18
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=96.20 E-value=0.087 Score=49.09 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=87.1
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|+++++++|-++|...+.=..=+++||++.=. |. |. .-.++... +++..+++ +.+ ..+++++.- +.
T Consensus 116 ~g~~ls~~el~~~a~~ig~dv~~~~~GG~~~~~-~~---g~--~~~~~~~~---~~~~~~lv-~p~--~~~sT~~~~-~~ 182 (300)
T PRK03188 116 WGLGLSRDELLELAAELGSDVPFALLGGTALGT-GR---GE--QLAPVLAR---GTFHWVLA-FAD--GGLSTPAVF-RE 182 (300)
T ss_pred hCCCcCHHHHHHHHHHhCCCcchhhcCCeEEEE-ec---CC--EEEECCCC---CCcEEEEE-eCC--CCCCHHHHH-Hh
Confidence 578899999999987665443456899995532 32 11 22343211 23433333 332 355444332 22
Q ss_pred hhcCccHHH-HHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 81 VETSLLLQH-RAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 81 v~TSpl~~~-r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
+. .+... .+. .......+..|++++|++.|++....+ +... -+...+.--++++. + ++.|-
T Consensus 183 l~--~~~~~~~~~--~~~~~~~~~~al~~~d~~~l~~~~~n~---le~~-------~~~~~p~l~~l~~~---~-~~~Ga 244 (300)
T PRK03188 183 LD--RLREAGDPP--RLGEPDPLLAALRAGDPAQLAPLLGND---LQAA-------ALSLRPSLRRTLRA---G-EEAGA 244 (300)
T ss_pred ch--hhhcccccc--ccccHHHHHHHHHcCCHHHHHHHhhCc---CHHH-------HHHhCchHHHHHHH---H-HHCCC
Confidence 21 11111 111 133578899999999999999875322 1111 12223333333333 3 34565
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
. .+.--=+||-+..++.+++..+++...+.+
T Consensus 245 l-ga~lSGsG~tv~~l~~~~~~~~~~~~~l~~ 275 (300)
T PRK03188 245 L-AGIVSGSGPTCAFLCADADSAVDVAAALSG 275 (300)
T ss_pred C-EEEEEccccceEEEeCCHHHHHHHHHHHHh
Confidence 4 556677899999999854445556666655
No 19
>PRK01123 shikimate kinase; Provisional
Probab=96.07 E-value=0.19 Score=46.63 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=78.9
Q ss_pred CCCCCChHHHHHHHHhh--------cc---ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCC
Q 023760 1 MNLKENQSQLSAIARQG--------SG---SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQK 69 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G--------SG---SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K 69 (277)
||++++.++|.++|+.. +| -.+.|+||||+.+.... ..+-..+.. ++.++| +++..
T Consensus 108 ~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG~~~~~~~~-----~~~~~~~~~-----~~~~vv-~~p~~-- 174 (282)
T PRK01123 108 LGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGGVTVTDNRE-----MKLLKRDEV-----ELDVLV-LIPPE-- 174 (282)
T ss_pred hCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCCEEEEcCCC-----ceEEEEecC-----CcEEEE-EECCC--
Confidence 57889999999999883 34 46789999999885321 112233321 244444 44443
Q ss_pred CCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHH
Q 023760 70 ETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISY 149 (277)
Q Consensus 70 ~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~ 149 (277)
++++.+ .+ +.++.. .-...+++.++++.+|+..+.. .|.+ +.+ . . +-..+ ++
T Consensus 175 ~~~T~~-~r---------~~~l~~-~~~~~d~~~~~~~~~~l~~~~~---~~~l-~~~----~---~--l~~~~-~~--- 226 (282)
T PRK01123 175 GAFSAS-AD---------VERMKL-IAPYVDMAFELALDGEYFKAMT---LNGL-LYS----S---A--LGFPT-EP--- 226 (282)
T ss_pred Ccchhh-hh---------hhhchh-cCcHHHHHHHHHhhccHHHHHH---hCCc-hhh----h---h--hCCCh-HH---
Confidence 322222 11 111222 1224467777788888863322 2211 100 0 0 11111 22
Q ss_pred HHHHHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhc
Q 023760 150 VERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 150 V~~~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~ 192 (277)
|... ++.|-.-++=| =+||-+..++++ ++.+++...+.+.
T Consensus 227 i~~a-~~~Ga~ga~lS-GaGptv~al~~~-~~~~~v~~~l~~~ 266 (282)
T PRK01123 227 ALEA-LEAGAVGVGLS-GTGPSYVAIVDE-EDPEEVKEAWEKY 266 (282)
T ss_pred HHHH-HHCCCeEEEEe-cCCCeEEEEeCC-CCHHHHHHHHHhC
Confidence 3333 24554423344 499999999984 5566788887763
No 20
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=96.02 E-value=0.15 Score=47.13 Aligned_cols=146 Identities=10% Similarity=0.077 Sum_probs=79.6
Q ss_pred CCCCCChHHHHHHHHhh--------ccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCC
Q 023760 1 MNLKENQSQLSAIARQG--------SGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQK 69 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G--------SGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K 69 (277)
|+++++.+++-++|+.. .|+ ++-|+|||++...... .-+-.++. .|++ .++++++..
T Consensus 97 ~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG~~~~~~~~-----~~~~~~~~----~~~~-~~vv~~p~~-- 164 (261)
T TIGR01920 97 KGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGGIVITDNRR-----MKILKRDK----LEGC-TAAVLVPKE-- 164 (261)
T ss_pred hCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCCEEEEeCCC-----ceEEEecC----CCCc-eEEEEECCC--
Confidence 57889999999999983 333 3568999997653211 11222221 1333 344444433
Q ss_pred CCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHH
Q 023760 70 ETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISY 149 (277)
Q Consensus 70 ~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~ 149 (277)
.+ ||. ......+.. .-...+++.++++.+|+. ++...|-+ ++...+++.+ . .
T Consensus 165 ~~-tt~---------~~~~~~l~~-~~~~~~~~~~~~~~~~l~---~am~~n~~-----l~~~~lg~~~------~---~ 216 (261)
T TIGR01920 165 GE-RRE---------NVDLNRFRR-ISPVVEEAFNLALRGEYL---KAMVLNGV-----AYATALGYPL------E---P 216 (261)
T ss_pred Cc-ccc---------cccHHHhhh-cchHHHHHHHHHhhCCHH---HHHhhChH-----HhHHhhCCCh------H---H
Confidence 22 221 111123333 345778889999999988 22222222 2212222211 2 3
Q ss_pred HHHHHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 150 VERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 150 V~~~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
++.. ++.|-. .++--=|||-+..|+++ + +++...+.+
T Consensus 217 i~~a-~~~Gal-ga~lSGaG~sv~aL~~~-~--~~v~~~~~~ 253 (261)
T TIGR01920 217 ASKA-LEAGAA-AAGLSGKGPSYFALTED-P--EEAAEALME 253 (261)
T ss_pred HHHH-HHcCCc-EEeecCCCCeEEEEeCC-H--HHHHHHHHh
Confidence 3445 345654 44555689999999874 3 467777766
No 21
>PRK00555 galactokinase; Provisional
Probab=95.76 E-value=0.39 Score=46.45 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEecc--CCCeEE
Q 023760 97 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDA--GPNAVL 174 (277)
Q Consensus 97 ~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DA--GPNv~i 174 (277)
++..++.+||+++|++.||++.- +-|..+.+.+ ---++. +-.+++..+ +.|.. .+.-.=| ||-+..
T Consensus 255 ~~v~~~~~al~~gd~~~lg~lm~----~~h~~lr~~~---~vS~~~---ld~l~~~a~-~~Ga~-GaklsGaG~Gg~via 322 (363)
T PRK00555 255 QRVLDFAAALADSDFTAAGQLLT----ASHASMRDDF---EITTER---IDLIADSAV-RAGAL-GARMTGGGFGGCVIA 322 (363)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH----HhhHHHHhhc---CCCChh---HHHHHHHHH-hcCCe-EEEECCCCccCeEEE
Confidence 47889999999999999999875 4466654332 000122 222343333 34665 6667788 598888
Q ss_pred eeecccCHHHHHHHHHhcCC
Q 023760 175 IARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~f~ 194 (277)
++++ +..+++...+.+.|.
T Consensus 323 l~~~-~~~~~~~~~l~~~y~ 341 (363)
T PRK00555 323 LVPA-DRAEDVADTVRRAAV 341 (363)
T ss_pred EEch-hHHHHHHHHHHHHHH
Confidence 8884 556678888887664
No 22
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=95.61 E-value=0.59 Score=44.78 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=106.4
Q ss_pred CCCCCChHHHHHHHHhhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCc-cceEEEEEEcCCCCCCCchHH
Q 023760 1 MNLKENQSQLSAIARQGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTG 76 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~-~l~~ii~vvs~~~K~vsSt~G 76 (277)
++++++..++=++|=.+.|= .+=|++||++.+... ..-.++.+. |+ +++.++ ++++ -++ ||.-
T Consensus 110 ~~~~L~~~~ll~~a~~~EgHpDNVapa~lGG~~l~~~~-----~~~~~~~v~----~~~~~~~v~-~iP~--~e~-sT~~ 176 (299)
T COG0083 110 AGLPLSKEELLQLALEIEGHPDNVAPAVLGGLVLVEEE-----SGIISVKVP----FPSDLKLVV-VIPN--FEV-STAE 176 (299)
T ss_pred hcCCCCHHHHHHHHHHhcCCCchHHHHhhCCEEEEeec-----CCceEEEcc----CCcceEEEE-EeCC--ccc-cHHH
Confidence 36789999999999999882 356899999999863 223455553 43 444444 4452 333 5666
Q ss_pred HhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHH
Q 023760 77 MRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 156 (277)
Q Consensus 77 M~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~ 156 (277)
++...-++--++.=+.+ -.+..-|..|+.++| ..++...|+|- +|.--.... -|... .|++.-.+
T Consensus 177 aR~vLP~~~~~~daV~n--~s~~a~lv~al~~~~-~~l~~~~~~D~--ihepyR~~L------~P~~~----~v~~~a~~ 241 (299)
T COG0083 177 ARKVLPKSYSRKDAVFN--LSRAALLVAALLEGD-PELLRAMMKDV--IHEPYRAKL------VPGYA----EVREAALE 241 (299)
T ss_pred HHHhccccCCHHHHHHH--HHHHHHHHHHHHcCC-HHHHHHHhccc--cchhhhhhh------CccHH----HHHHHHhh
Confidence 77778888888888875 369999999999999 88999998884 444332221 12222 23333234
Q ss_pred cCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 157 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 157 ~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
.|-. .++--=|||.+..+|.+. +.+.+...+..
T Consensus 242 ~gA~-g~~lSGAGPTi~al~~~~-~~e~~~~~~~~ 274 (299)
T COG0083 242 AGAL-GATLSGAGPTVFALADES-DAEKAAALLEE 274 (299)
T ss_pred CCce-EEEEecCCCeEEEEeccc-hhhHHHHHHHH
Confidence 4554 677789999999999964 44344444433
No 23
>PRK05322 galactokinase; Provisional
Probab=94.98 E-value=1.4 Score=43.05 Aligned_cols=86 Identities=17% Similarity=0.127 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCC--CeEE
Q 023760 97 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGP--NAVL 174 (277)
Q Consensus 97 ~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGP--Nv~i 174 (277)
++...+..||+++|++.||++...+-..||..---+.|. .-. +|+..++..|.. .+.-.=||| -+..
T Consensus 279 ~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y~~s~~e-------ld~---lv~~a~~~~Ga~-garlsGaG~GG~via 347 (387)
T PRK05322 279 QRTLKAVKALKAGDLEKFGRLMNASHVSLRDDYEVTGLE-------LDT---LVEAAWKQEGVL-GARMTGAGFGGCAIA 347 (387)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhhcCCCHh-------HHH---HHHHHHhcCCcc-EEEEecCCCceEEEE
Confidence 467888999999999999999886666687543333232 222 333333334665 688889999 5566
Q ss_pred eeecccCHHHHHHHHHhcCC
Q 023760 175 IARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~f~ 194 (277)
++++ +..+++.+.+.+.|.
T Consensus 348 l~~~-~~~~~~~~~l~~~y~ 366 (387)
T PRK05322 348 IVKK-DKVEAFKENVGKAYE 366 (387)
T ss_pred EEcH-HHHHHHHHHHHHHHH
Confidence 6663 556677777766553
No 24
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=94.33 E-value=1.9 Score=41.55 Aligned_cols=181 Identities=14% Similarity=0.120 Sum_probs=110.4
Q ss_pred CCCCCChHHHHHHHHhhcccccc---ccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHH
Q 023760 1 MNLKENQSQLSAIARQGSGSACR---SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 77 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcR---Si~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM 77 (277)
|||+++-+||....++|.=||-= =-||||+. +-|....=.-|-|-|+---.++|+=-.+|+++.+-++.++-..--
T Consensus 104 ~gl~~~~~elA~~vgRG~tSgiGv~afe~GGFIV-DGGh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~rg~~~~~E~ 182 (312)
T COG1907 104 YGLELSIRELAFAVGRGGTSGIGVYAFEYGGFIV-DGGHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVERGVSGRREV 182 (312)
T ss_pred hcCCCCHHHHHHHHccCCccceeEEEEEECCEEE-ECCcccCcccCCCCceeeeecCCCceEEEEEecCCCccccchHHH
Confidence 78999999999999999888742 23688865 223221100111112211122332226777778776666655554
Q ss_pred hhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHh---ccCCCCeEeeehhHHHHHHHHHHHH
Q 023760 78 RESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC---LDTSPPIFYMNDTSHRIISYVERWN 154 (277)
Q Consensus 78 ~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~---l~t~Ppi~Y~n~~S~~ii~~V~~~n 154 (277)
..--++.|.=...+++....-+=.|.-|+.++|++.||+-. ++|+.+. ... ---.|+.+.-..||+..++-
T Consensus 183 ~if~~~~p~p~~~~~~ls~~vLm~mmPavvE~Die~fg~~l----~~iQ~l~g~~f~~-~e~~~~~~~V~~iv~~m~~~- 256 (312)
T COG1907 183 DIFKKYCPVPLEEVGELSHRVLMKMMPAVVERDIESFGEAL----NEIQELGGKWFKK-VEGGLQREDVKEIVDEMVEA- 256 (312)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhHHHHhhCHHHHHHHH----HHHHHHHhhhhhh-hhceeccHHHHHHHHHHHHh-
Confidence 44445556655666666566678899999999999999865 4454544 332 24567787777777766542
Q ss_pred HHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 155 RSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 155 r~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
. . ++-----||.|.=++.+ +....++..+...|-
T Consensus 257 a-~----~agqSSwGPtvY~i~d~-~~~~~~~~~~~~~~~ 290 (312)
T COG1907 257 A-Y----GAGQSSWGPTVYGIVDS-REAGSVVRKLIDILL 290 (312)
T ss_pred c-c----cccccccCCEEEEeccc-cccchHHHHHHHHHH
Confidence 1 1 12233459999999996 444445555555553
No 25
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=93.70 E-value=1.3 Score=41.58 Aligned_cols=157 Identities=12% Similarity=0.085 Sum_probs=81.6
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeee-eccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVK-WILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~-W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
++++++.++|-++|+..++...=+++||++. +..|+ .-.++.. .+++. ++ ++.. ...++ |.-+.+
T Consensus 119 ~~~~l~~~~l~~la~~lg~Dv~~~~~gg~~~~~g~ge-------~~~~l~~---~~~~~-~v-l~~p-~~~~s-T~~~~~ 184 (293)
T TIGR00154 119 WQLGLSLEELAELGLTLGADVPFFVSGHAAFATGVGE-------IITPFED---PPEKW-VV-IAKP-HVSIS-TPVVYQ 184 (293)
T ss_pred hCCCcCHHHHHHHHHHhCCCcceEEECCeEEEEecCc-------EEEECCC---CCCcE-EE-EEcC-CCCcC-hHHHHH
Confidence 4788999999999997776777888998743 33332 1234421 13333 23 3322 24443 443433
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
.+. + .+..+.....+..++...|+..+..... |.+-+... =..|.-.++++. + ++.|-
T Consensus 185 ~l~---~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~---ndle~~~~-------~~~p~l~~i~~~---l-~~~Ga 242 (293)
T TIGR00154 185 AYK---L-----PRNTPKRAKEWLKKISLECLQLLDSNGL---NDLEKVAL-------KRHTEVAQALNW---L-LEYGL 242 (293)
T ss_pred hhh---h-----cccCcchhHHHHHHHhhccHHHHhhhhc---CccHHHHH-------hcCHHHHHHHHH---H-HhCCC
Confidence 221 0 1111234455667777777665543321 11112211 123333333333 3 34565
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
. .+.=-=+||-|+.++.+++..+++.+.+++.++
T Consensus 243 ~-~a~mSGSG~tvf~l~~~~~~a~~~~~~~~~~~~ 276 (293)
T TIGR00154 243 A-PERLSGSGACVFALFDMESEAEQVLEQAPEWLN 276 (293)
T ss_pred C-eEEEeccccceEEEeCCHHHHHHHHHHhHHHhh
Confidence 4 455456799999999864545556665654443
No 26
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=92.80 E-value=0.92 Score=49.70 Aligned_cols=175 Identities=17% Similarity=0.093 Sum_probs=97.5
Q ss_pred CCCCCChHHHHHHHHh------hccccc---cccCCCeeeeccCCCCCCCCceeEecCCCCCC-ccceEEEEEEcCCCCC
Q 023760 1 MNLKENQSQLSAIARQ------GSGSAC---RSLFGGFVKWILGKEGNGSDSLAVQLVDEEHW-NDLVIIIAVVSSRQKE 70 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~------GSGSAc---RSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw-~~l~~ii~vvs~~~K~ 70 (277)
||++++..++.++|.. |.||.- =++|||+..-..+...+ ......++.....+ +++.--++++..+.+.
T Consensus 759 ~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~~~-~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR 837 (974)
T PRK13412 759 CGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAGFA-QSPLVRWLPDSLFTQPEYRDCHLLYYTGITR 837 (974)
T ss_pred hCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCCcc-cCcceeecCcchhhhhhccCcEEEEECCCee
Confidence 4778899999998873 333322 25899998776554211 12234444322111 3455556666777544
Q ss_pred CCchHHHh-----hhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHH
Q 023760 71 TSSTTGMR-----ESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHR 145 (277)
Q Consensus 71 vsSt~GM~-----~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ 145 (277)
+|..+- +.....+.+..-+++ ..+-..++++||+++|++.||++.-.+-..+|++..... |+.--+
T Consensus 838 --~T~~iV~~Vv~~~~~~~~~~~~~l~~-ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVS------np~LD~ 908 (974)
T PRK13412 838 --TAKGILAEIVRSMFLNSTAHLQLLHE-MKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTN------PAAVEA 908 (974)
T ss_pred --eHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCC------CHHHHH
Confidence 444432 222333444445554 466678899999999999999999888777887732221 233334
Q ss_pred HHHHHHHHHHHcCCCeEEEEeccCCCeEE--eeecccCHHHHHHHHHh
Q 023760 146 IISYVERWNRSVGSPQVAYTFDAGPNAVL--IARNRKIATELLQRLLF 191 (277)
Q Consensus 146 ii~~V~~~nr~~g~~~v~yT~DAGPNv~i--~~~~~~~~~~~~~~l~~ 191 (277)
+++..++ |.. -+=-.=||=-=++ ++.+.+..+++...+.+
T Consensus 909 Li~~A~~-----gAl-GaKLTGAGGGGcvI~Lak~~~~a~~I~~~L~~ 950 (974)
T PRK13412 909 IIELIKD-----YTL-GYKLPGAGGGGYLYMVAKDPGAAERIRKILTE 950 (974)
T ss_pred HHHHHHc-----CCc-EEEecccCcccEEEEEECChhhHHHHHHHHHh
Confidence 4544432 211 1212345555333 44334554455555554
No 27
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=92.42 E-value=4.3 Score=39.34 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=54.1
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHH-HHHHHHHHcCCCeEEEEeccCC--CeEE
Q 023760 98 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS-YVERWNRSVGSPQVAYTFDAGP--NAVL 174 (277)
Q Consensus 98 ~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~-~V~~~nr~~g~~~v~yT~DAGP--Nv~i 174 (277)
|+.++++|++++|++.||++.-. + |..+.+- | ..|..=++ +|+...+..|-. .+=-.=||+ -+..
T Consensus 279 rv~~~~~al~~~d~~~lG~lm~~-s---h~~l~~~-----~--~vs~peld~lv~~a~~~~GAl-GakltGaG~GG~via 346 (386)
T TIGR00131 279 RVLKAVKAMKDNDFKQFGALMNE-S---HASCDDD-----Y--ECTCPEIDELVCSAALVNGSG-GSRMTGAGFGGCTVH 346 (386)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHH-h---hHHHHHh-----c--CCCCHHHHHHHHHHHhcCCCc-EEEEecCCCceEEEE
Confidence 45678999999999999998743 3 4444331 1 22222333 555433445655 455667887 4566
Q ss_pred eeecccCHHHHHHHHHhcCCCC
Q 023760 175 IARNRKIATELLQRLLFFFPPN 196 (277)
Q Consensus 175 ~~~~~~~~~~~~~~l~~~f~~~ 196 (277)
+++ ++..+++...+.+.|+..
T Consensus 347 l~~-~~~~~~v~~~~~~~y~~~ 367 (386)
T TIGR00131 347 LVP-NENVDKVRQAVADKYPKK 367 (386)
T ss_pred EEc-HHHHHHHHHHHHHHHHHh
Confidence 676 455678999998888543
No 28
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=91.69 E-value=5.2 Score=37.71 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=87.1
Q ss_pred CCCh-HHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhh
Q 023760 4 KENQ-SQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVE 82 (277)
Q Consensus 4 ~~~~-~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~ 82 (277)
+++. ++|-.||...+ |=.=.++||++.|-.|.. .. -+++..+..| . ++++++ -.+|+.+ +...+.
T Consensus 127 ~l~~~e~L~~lA~~lG-aDvP~~l~G~~a~~~g~G---e~--~~~l~~~~~~----~-vlv~P~--~~vsT~~-a~~~l~ 192 (297)
T PRK14613 127 NFFTSDEMQVFAKEIG-SDVPFFLGEGHAFVTGKG---EI--MEEIEVHKGQ----G-ILALTP--QVMNTGE-MYALLK 192 (297)
T ss_pred CCCcHHHHHHHHHHhC-CccchhhcCCeEEEecCC---cE--EEEcCCCCCe----E-EEEECC--CCcChHH-HHHhcc
Confidence 3443 67887876553 357788888899987742 22 3455322222 2 444443 4454443 433221
Q ss_pred cCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeE
Q 023760 83 TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQV 162 (277)
Q Consensus 83 TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v 162 (277)
..+.......+...+...+..++..+|++.+....+ |-+ ......-+| ...++.+. + ++.|-. .
T Consensus 193 -~~~~~~~~~~~~~~~~~~~~~al~~~~~~~l~~~l~-ndl--e~~~~~l~P-------~~~~i~~~---~-~~~Ga~-~ 256 (297)
T PRK14613 193 -KPLQESASQKNGNTLSEDLISSLKVGDWVSLQGRLE-NDF--EPVAFQLHP-------ELGVLKDK---F-LEFGSS-Y 256 (297)
T ss_pred -hhhccccccccccccHHHHHHHHHcCCHHHHHHHhc-ccc--hHHHHHhCc-------HHHHHHHH---H-HHcCCC-E
Confidence 111000000011112346788999999997765432 323 333322233 33333332 3 335654 5
Q ss_pred EEEeccCCCeEEeeecccCHHHHHHHHHhcCCC
Q 023760 163 AYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 163 ~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
++--=+||-|+.++.+++..+++...+++.|+.
T Consensus 257 ~~mSGSGptvf~l~~~~~~a~~~~~~l~~~~~~ 289 (297)
T PRK14613 257 CSLTGSGSSMYGLVQGLEIQEELLPRLRQEFSN 289 (297)
T ss_pred EEEEccccceEEEeCCHHHHHHHHHHHHHhhcc
Confidence 666778999999998656667788888877654
No 29
>PTZ00299 homoserine kinase; Provisional
Probab=91.12 E-value=7.5 Score=37.62 Aligned_cols=168 Identities=15% Similarity=0.226 Sum_probs=91.2
Q ss_pred CCCCCC---hHHHHHHHHhhcc-c--cccccCCCeee-eccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCc
Q 023760 1 MNLKEN---QSQLSAIARQGSG-S--ACRSLFGGFVK-WILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS 73 (277)
Q Consensus 1 ~~l~~~---~~~lS~lAR~GSG-S--AcRSi~GGfV~-W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsS 73 (277)
+|++++ ..+|-.+|-.+=| + .+=++|||++. |..|. .+-...++... +++.. ++++++-.=++ |
T Consensus 115 ~g~~l~~~~~~el~~~A~~~EGHpDNVapal~GG~~~~~~~~~----ge~~~~~i~~~---~~~~~-vv~iP~~~~~~-s 185 (336)
T PTZ00299 115 CGLTMETENEEALLQAIAKFEGHPDNAAPAIYGGIQLVYKKDN----GRFLTYRVPTP---PNLSV-VLFVPHNKMKA-N 185 (336)
T ss_pred hCCCCCccCHHHHHHHHHhhcCCcccHHHHHhCCEEEEEecCC----CceEEEecCCC---CCeEE-EEEECCCCccc-c
Confidence 356775 5666666655535 2 24599999965 43331 11234455322 23444 44445432133 5
Q ss_pred hHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCe-EeeehhHHHHHHHHHH
Q 023760 74 TTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPI-FYMNDTSHRIISYVER 152 (277)
Q Consensus 74 t~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi-~Y~n~~S~~ii~~V~~ 152 (277)
|.-++...-..--++.=+.+ -.+...+..++..+|++.+.. +. ..+|. |.- +=+-|....+.+..
T Consensus 186 T~~aR~vLP~~v~~~dav~n--~~~~~~lv~al~~~d~~ll~~--~~--D~lhe------p~R~~~liP~~~~v~~~~-- 251 (336)
T PTZ00299 186 THVTRNLIPTSVSLEDAVFN--ISRTSILVLALSTGDLRMLKS--CS--DKLHE------QQRSDALFPHFRPCVKAA-- 251 (336)
T ss_pred HHHHHhhCcccCcHHHHHHh--hhHHHHHHHHHHhCCHHHHHh--ch--hcccC------cccccccCccHHHHHHHH--
Confidence 56664433222222211221 134556899999999998854 33 35665 221 12334444444433
Q ss_pred HHHHcCCCeEEEEeccCCCeEEeeec-----------ccCHHHHHHHHHhcCC
Q 023760 153 WNRSVGSPQVAYTFDAGPNAVLIARN-----------RKIATELLQRLLFFFP 194 (277)
Q Consensus 153 ~nr~~g~~~v~yT~DAGPNv~i~~~~-----------~~~~~~~~~~l~~~f~ 194 (277)
.+.|-. .++--=|||.+..+|.+ ++..+++.+.+.+.|.
T Consensus 252 --~~~Ga~-g~~lSGSGPTv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 301 (336)
T PTZ00299 252 --REAGAH-YAFLSGAGPSVCALVGGRHGDPLTQPREERKAESVAEAMIKAAE 301 (336)
T ss_pred --HHCCCe-EEEEEchhhhheEEeccccccccccccchhHHHHHHHHHHHHHH
Confidence 345654 67778999999999972 2335568888777663
No 30
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=90.89 E-value=15 Score=35.37 Aligned_cols=165 Identities=19% Similarity=0.232 Sum_probs=93.0
Q ss_pred CCCCCChHHHHHHHH------hhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIAR------QGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR------~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||.+++++++.++|. +|-+| ..=+.|||++...++.. -+++. ..|.. -++| -+-..+.
T Consensus 116 ~g~~ls~~~l~~la~~~e~~vqG~~Sg~D~a~~~~gg~v~~~~~~~-------~~~l~--~~~~~---~~~I-~~tg~~~ 182 (307)
T COG1577 116 FGVELSPEELAKLANKVELIVQGKASGIDIATITYGGLVAFKKGFD-------FEKLE--IELLG---TLVI-GDTGVPG 182 (307)
T ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCCcccceEEEeCCEEEEecCCC-------ccccc--cccCC---eEEE-EEcCCcC
Confidence 678899999999885 56666 34589999999998621 12221 11222 3333 3443555
Q ss_pred CchHHHhhhh----hcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHH
Q 023760 72 SSTTGMRESV----ETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRII 147 (277)
Q Consensus 72 sSt~GM~~tv----~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii 147 (277)
++.+--+... +-..++..=++. ..+-..+++.||+++|++.||++.-.+---+-+.- +.++ .+-
T Consensus 183 sT~e~V~~V~~l~~~~~~~~~~~~~~-ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~Lg--------Vs~~---~L~ 250 (307)
T COG1577 183 STKELVAGVAKLLEEEPEVIDPILDA-IGELVQEAEAALQTGDFEELGELMNINQGLLKALG--------VSTP---ELD 250 (307)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC--------cCcH---HHH
Confidence 5552222111 224445555554 56677899999999999999999876655544443 3333 444
Q ss_pred HHHHHHHHHcCCCeEEEEeccCCCeEEeeecc--cCHHHHHHHHHhc
Q 023760 148 SYVERWNRSVGSPQVAYTFDAGPNAVLIARNR--KIATELLQRLLFF 192 (277)
Q Consensus 148 ~~V~~~nr~~g~~~v~yT~DAGPNv~i~~~~~--~~~~~~~~~l~~~ 192 (277)
++|...|+ .|.. -+=.-=||=-=|++++.+ +..+++...+.+.
T Consensus 251 ~lv~~a~~-~Ga~-gaKlTGAGgGGc~IaL~~~~~~~~~l~~~~~~~ 295 (307)
T COG1577 251 ELVEAARS-LGAL-GAKLTGAGGGGCIIALAKNEEIAETLSNRLEKA 295 (307)
T ss_pred HHHHHHHh-cCcc-ccccccCCCCceEEEEeccchHHHHHHHHHHhc
Confidence 45555532 3332 223445666555555532 2233444444443
No 31
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=88.06 E-value=7.2 Score=36.24 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=26.3
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCC
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 36 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~ 36 (277)
|+++++.++|-++|.... +=.-.+++|.+.|..|.
T Consensus 120 ~~~~ls~~el~~la~~ig-aDvp~~l~g~~~~~~g~ 154 (271)
T PRK00343 120 WQLGLSRDELAELGLKLG-ADVPVFVRGHAAFAEGI 154 (271)
T ss_pred hCCCcCHHHHHHHHHHhC-CCceEEecCCcEEEEec
Confidence 578899999999997653 33556778888887764
No 32
>PRK05101 galactokinase; Provisional
Probab=87.88 E-value=6.1 Score=38.48 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=51.2
Q ss_pred HHhhhhh--hhHHHHHHHHHcCCHHHHHHHHHHhHHHHHH-HhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEe
Q 023760 90 RAKEVVP--KRIVQMEEAIQNHDFSSFAQLTCADSNQFHA-VCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTF 166 (277)
Q Consensus 90 r~~~~v~--~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA-~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~ 166 (277)
|+.+++. ++..+.++|++++|++.||++.-.+-..|.. ...++ | .+-.+|+..+...|..-.+=-.
T Consensus 264 r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~~vS~-~----------eld~lv~~a~~~~Ga~gGaklt 332 (382)
T PRK05101 264 RARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDFEITV-P----------QIDTLVEIVKAVIGDQGGVRMT 332 (382)
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhcCCCC-H----------hHHHHHHHHHhccCCcceEEec
Confidence 4444333 3678889999999999999998655555542 22222 2 3334444443322421011123
Q ss_pred ccCCC--eEEeeecccCHHHHHHHHHhcCC
Q 023760 167 DAGPN--AVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 167 DAGPN--v~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
=||=- +..+++ ++..+++...+.+.|.
T Consensus 333 GaG~GG~~ial~~-~~~~~~~~~~~~~~y~ 361 (382)
T PRK05101 333 GGGFGGCIVALVP-EELVEAVRQAVAEQYE 361 (382)
T ss_pred cCCCccEEEEEEc-HHHHHHHHHHHHHHHH
Confidence 34433 444566 4556678877776653
No 33
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=86.90 E-value=12 Score=34.80 Aligned_cols=148 Identities=12% Similarity=0.095 Sum_probs=72.4
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeee-eccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVK-WILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~-W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
+|++++.++|-++|-..++=..=.+|||++. +..|+ ..+++.. -+++.+ +++.. ...+++.+.- +
T Consensus 118 ~~~~l~~~~l~~~a~~~G~Dv~~~l~gg~~~~~g~ge-------~~~~l~~---~~~~~i--vl~~p-~~~~sT~~~~-~ 183 (280)
T PRK14614 118 LGLGLSDERLMEIGVKLGADVPFFIFKKTALAEGIGD-------KLTAVEG---VPPLWV--VLVNP-GLHVSTAWVY-Q 183 (280)
T ss_pred hCCCcCHHHHHHHHHHhCCCcceeeeCCcEEEEEcCc-------eeEECCC---CCCcEE--EEECC-CCCCCHHHHH-h
Confidence 4678999999998754322222457888854 44443 1334421 134442 33333 3555544433 2
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHH--HHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQME--EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 157 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~--~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~ 157 (277)
.+.. .+.......++.+..+. .++..+||+.++ +.. .+.-.++ ++.+ ++.
T Consensus 184 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ndle~~~--------------~~~-------~p~l~~i---~~~~-~~~ 235 (280)
T PRK14614 184 NLRL---TSRKDLAIIPRFFGSVAEVCALLSNDLESVT--------------IGR-------FPVIGEI---KEEL-LAA 235 (280)
T ss_pred cccc---cccCcchhhhhhhhhHHHHhhhcccCcHHHH--------------Hhc-------ChHHHHH---HHHH-HhC
Confidence 2211 00001111233222222 244557776552 111 1222223 3333 445
Q ss_pred CCCeEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 158 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 158 g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
|-. .+.--=+||-+..+|.+++..+++.+.+++
T Consensus 236 Gal-ga~lSGSG~tv~~l~~~~~~~~~~~~~l~~ 268 (280)
T PRK14614 236 GAR-GSLMSGSGSTVFGLFDDEAAARAAAEELSR 268 (280)
T ss_pred CCC-EEEEeccccceEEEeCCHHHHHHHHHHhhh
Confidence 654 566667899999999854445566666666
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=85.88 E-value=25 Score=32.68 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=82.2
Q ss_pred CCCCCChHHHHHHHHhhcccccc-ccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACR-SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcR-Si~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
+|++++.++|-++|..-.+-+.= ..+||++ +..|. |.. -+++... +.+. +++++. ...+ ||.-+..
T Consensus 116 ~g~~ls~~el~~~a~~ig~Dvp~~l~~gg~~-~~~g~---g~~--~~~~~~~---~~~~-~vvv~P--~~~v-sT~~a~~ 182 (287)
T PRK14616 116 WEINAPSADLHRLAVKLGADVPYFLEMKGLA-YATGI---GDE--LEDLQLT---LPFH-IVTVFP--EEHI-STVWAYK 182 (287)
T ss_pred hCCCcCHHHHHHHHHHhCCCcceEeccCCcE-EEEEc---Cce--eEECCcC---CCcE-EEEECC--CCCc-CHHHHHH
Confidence 57889999999999765444322 2268886 43342 221 2333211 2234 333333 2556 4444433
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHHHHHHc-CCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcC
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQMEEAIQN-HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG 158 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~~AI~~-~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g 158 (277)
.+...... . ..++..+..++.. +|++.++. .+.|- .|+.+-+.+.-.+ |++.-++.|
T Consensus 183 ~l~~~~~~-----~--~~~~~~l~~~l~~~~~~~l~~~-~~nD~----------e~~~~~l~p~l~~----v~~~~~~~G 240 (287)
T PRK14616 183 NFYRRFER-----E--RPDLKTLVRRLCLDGDTSVLPA-FENDF----------ESAVFDHYPAVRK----VKDDLLEAG 240 (287)
T ss_pred Hhhhhccc-----C--CchHHHHHHHHhcCCHHHHHHH-hcCcc----------HHHHHHhChHHHH----HHHHHHhCC
Confidence 22111100 1 1234445555444 56655433 11211 1121122233233 333223456
Q ss_pred CCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCC
Q 023760 159 SPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPN 196 (277)
Q Consensus 159 ~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~ 196 (277)
-. .+.--=+||-+..+|.+++..+++.+.+++.||..
T Consensus 241 al-g~~lSGSGptv~al~~~~~~a~~i~~~l~~~~~~~ 277 (287)
T PRK14616 241 SF-FASLSGSGSAVFGLFENEADAEAAAEMMRARYRTN 277 (287)
T ss_pred CC-eEEEecccccceEEeCCHHHHHHHHHHhHHhCccc
Confidence 54 56677899999999986566778999999988874
No 35
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=81.83 E-value=32 Score=32.16 Aligned_cols=153 Identities=12% Similarity=0.077 Sum_probs=76.4
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|+++++++|-++|....+-..=+++||++. ..|. |.. -+++.. .+++.+++ +++ ...+| |.-+...
T Consensus 123 ~~~~ls~~el~~la~~ig~dv~~~l~gg~~~-~~g~---g~~--~~~l~~---~~~~~~vv-~~p--~~~~s-T~~~~~~ 189 (290)
T PRK14608 123 WGLALDDERLAALALSLGADVPVCLDSRPLI-MRGI---GEE--LTPLPG---LPSLPAVL-VNP--GVPVA-TPDVFRA 189 (290)
T ss_pred hCCCcCHHHHHHHHHHhCCCcchhhcCCeEE-EEec---CCE--eEECCC---CCCcEEEE-ECC--CCCcC-hHHHHHh
Confidence 4788999999999997777777889999854 3332 111 244421 34444333 323 35554 5555433
Q ss_pred hhcCccHHHHHhhh-hhhhHHHHHHHHH--cCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc
Q 023760 81 VETSLLLQHRAKEV-VPKRIVQMEEAIQ--NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 157 (277)
Q Consensus 81 v~TSpl~~~r~~~~-v~~~~~~m~~AI~--~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~ 157 (277)
+... ....+...+ .-.+...+..++. ..||+..+ +-+.|.-.++.+.. ++.
T Consensus 190 l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ndle~~~---------------------~~l~p~l~~i~~~~----~~~ 243 (290)
T PRK14608 190 LGLR-DGPPLPGAPDPLASADALLAALAATRNDLEPPA---------------------LALAPVIGEVLAAL----RAQ 243 (290)
T ss_pred hccc-cCCcchhhhhhhhhhhhHHHHHHhccCccHHHH---------------------HHcCcHHHHHHHHH----Hhc
Confidence 3211 100000000 0011112222222 12332211 11223333333333 334
Q ss_pred -CCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcC
Q 023760 158 -GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 158 -g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
|-. .+.=-=+||-++.+|.+++..+++.+.+++.+
T Consensus 244 ~Ga~-~~~lSGSGstvf~l~~~~~~a~~~~~~l~~~~ 279 (290)
T PRK14608 244 PGAL-LARMSGSGATCFALFADEAAAEAAAAAIAAAH 279 (290)
T ss_pred CCCC-eeEEeccccCeEEEeCCHHHHHHHHHHhHhhC
Confidence 654 56677899999999986555667777777654
No 36
>PLN02677 mevalonate kinase
Probab=79.71 E-value=24 Score=34.82 Aligned_cols=105 Identities=15% Similarity=0.208 Sum_probs=61.8
Q ss_pred HHHHHHHH------hhcccc---ccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHh
Q 023760 8 SQLSAIAR------QGSGSA---CRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMR 78 (277)
Q Consensus 8 ~~lS~lAR------~GSGSA---cRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~ 78 (277)
+++.++|. .|.+|. +=|.|||++...++. .+++... ++++ ++|++.+.+. ||.-|=
T Consensus 183 ~~i~~~A~~~E~~~hG~pSGiD~a~s~~Gg~I~f~~~~--------~~~l~~~---~~l~--llv~dTgv~~--sT~~lV 247 (387)
T PLN02677 183 ELVNKWAFEGEKIIHGKPSGIDNTVSTYGNMIKFKSGE--------LTRLQSN---MPLK--MLITNTRVGR--NTKALV 247 (387)
T ss_pred HHHHHHHHHHHHHHhCCCCchhHHHHhcCCeEEEcCCC--------ceecCCC---CCce--EEEEECCCCC--cHHHHH
Confidence 35555564 333443 459999999998763 2444321 2333 5566666333 454443
Q ss_pred hhhh-----cCccHHHHHhhhhhhhHHHHHHHHHc---------CCHHHHHHHHHHhHHHHHHH
Q 023760 79 ESVE-----TSLLLQHRAKEVVPKRIVQMEEAIQN---------HDFSSFAQLTCADSNQFHAV 128 (277)
Q Consensus 79 ~tv~-----TSpl~~~r~~~~v~~~~~~m~~AI~~---------~Df~~fgei~e~ds~~mHA~ 128 (277)
..|. ....|+.-++. ..+-.++++++|++ +|++.++++...|-.-|-++
T Consensus 248 ~~V~~~~~~~p~~~~~il~~-~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~L 310 (387)
T PLN02677 248 AGVSERALRHPDAMKSVFNA-VDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQCM 310 (387)
T ss_pred HHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHc
Confidence 3331 12233333443 56667888889887 57999999987776666554
No 37
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=77.63 E-value=21 Score=32.89 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=72.5
Q ss_pred HhhccccccccCCCeeee-ccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhh
Q 023760 15 RQGSGSACRSLFGGFVKW-ILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKE 93 (277)
Q Consensus 15 R~GSGSAcRSi~GGfV~W-~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~ 93 (277)
..|+. ..=.++||++.= ..|+ ..+++.. ..| + ++++++. ..+| |.-+...+....+ .
T Consensus 128 ~~g~d-v~~~~~GG~~~~~g~g~-------~~~~l~~-~~~---~-~vv~~P~--~~~s-T~~a~~~l~~~~~-----~- 185 (276)
T PRK14612 128 TLGAD-VPFFLLGGAAEARGVGE-------RLTPLEL-PPV---P-LVLVNPG--VAVS-ARDAYRWLEPEDF-----G- 185 (276)
T ss_pred HhCCC-cCeeeeCCeEEEEecCc-------cceEcCC-CCc---E-EEEECCC--CCCC-HHHHHHhhccccC-----C-
Confidence 45654 557899999543 3332 1345532 234 3 4444443 4444 5444443321111 1
Q ss_pred hhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCCCeE
Q 023760 94 VVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAV 173 (277)
Q Consensus 94 ~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPNv~ 173 (277)
.+.+...+..++.++|...+ .|.|+ |+.+-..+.-.++++. + ++.|-. .+.--=+||-++
T Consensus 186 -~~~~~~~l~~~l~~~d~~~~-------~n~l~-------~~~~~~~p~l~~i~~~---l-~~~Ga~-~~~lSGsGptvf 245 (276)
T PRK14612 186 -PELDVEAILAALARGEEPPY-------WNSLE-------GPVFARHPELQEVLAA---L-RAAGLR-GVLMSGSGSTCF 245 (276)
T ss_pred -CcccHHHHHHHHHhcccccc-------cCCcH-------HHHHHhChHHHHHHHH---H-HhCCCC-EEEEcCcchhhE
Confidence 12356777788888873211 11122 2222233444444433 3 345665 566778999999
Q ss_pred EeeecccCHHHHHHHHHhcCC
Q 023760 174 LIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 174 i~~~~~~~~~~~~~~l~~~f~ 194 (277)
.+|.+++..+++.+.+++.++
T Consensus 246 al~~~~~~a~~~~~~l~~~~~ 266 (276)
T PRK14612 246 GLAEDAAQAQRAAAALRARHP 266 (276)
T ss_pred EEeCCHHHHHHHHHHhHhhCC
Confidence 999854555667777777553
No 38
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=68.41 E-value=44 Score=33.90 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=25.0
Q ss_pred CchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHH
Q 023760 72 SSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFS 112 (277)
Q Consensus 72 sSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~ 112 (277)
+||..|=..| ..|.++ -++..+.+-++|...+-.
T Consensus 282 ssT~~lV~~V------~~~~~~-~p~~s~~i~~~l~~aN~~ 315 (454)
T TIGR01219 282 SSTPSMVGKV------KKWQMS-DPEESRENWQNLSDANLE 315 (454)
T ss_pred cCcHHHHHHH------HHHHHH-CHHHHHHHHHHHHHHHHH
Confidence 7899997776 777776 577777777777776443
No 39
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=57.78 E-value=1.7e+02 Score=27.51 Aligned_cols=165 Identities=13% Similarity=0.054 Sum_probs=76.8
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|++++.++|-.+|-.+++-+.=-++||. .|-.|.. . .-+++.. ..+++. ++++++ ...+|+.+.-+ .
T Consensus 121 ~~~~l~~~~l~~~a~~~gaDvPffl~gg~-a~~~G~G---e--~~~~l~~--~~~~~~-~vl~~P--~~~vsT~~a~~-~ 188 (296)
T PRK14615 121 APHPLSPEALAKLAAGVGADVPFFLHNVP-CRATGIG---E--ILTPVAL--GLSGWT-LVLVCP--EVQVSTPWAYA-A 188 (296)
T ss_pred cCCCcCHHHHHHHHHHhCCCCeeeccCCC-EEEEeeE---e--EEEECCC--CCCCcE-EEEECC--CCCcChHHHHH-H
Confidence 57889999999998765555555566876 4555532 2 1244421 123333 333333 35565544322 1
Q ss_pred hhcCccHHHHHhhh-hhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 81 VETSLLLQHRAKEV-VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 81 v~TSpl~~~r~~~~-v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
.. ..+-..+.... .-.++..+..+...+|...++.... --|.| .|+.+-+.|.-.++.+.. .+.|-
T Consensus 189 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-l~ndl-------e~~~~~l~P~l~~~~~~~----~~~GA 255 (296)
T PRK14615 189 WD-AANAKQIAASSRKQNRLRGCLTTEGVADRNPLSRGLW-LHNSF-------EPVVFAAHPELRRLKETL----LRHGA 255 (296)
T ss_pred hh-hhcccccccccccccchHHHHHhhhccchhhhhhhhh-ccccc-------hhHhHHhChHHHHHHHHH----HhcCC
Confidence 10 00000000000 0001122333444455544433211 00111 133222333333333333 33565
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
. .+.=-=+||-++.++.+++..+++.+.+++
T Consensus 256 l-ga~mSGSGptvfaL~~~~~~a~~i~~~l~~ 286 (296)
T PRK14615 256 A-AALMSGSGSSVFGLFRRRAQAEAAFEMLKG 286 (296)
T ss_pred C-EEEEeccCcceEEEeCCHHHHHHHHHHHhh
Confidence 4 566678999999999865666667777766
No 40
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=57.06 E-value=1.6e+02 Score=27.21 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=21.9
Q ss_pred CCCCCChHHHHHHHHhhcccccccc-CCCeeeeccC
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSL-FGGFVKWILG 35 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi-~GGfV~W~~G 35 (277)
++++++.++|..+|... ||-+--. +||. .|-.|
T Consensus 115 ~~~~l~~~~l~~la~~i-GaDvpffl~g~~-a~~~G 148 (269)
T PRK14609 115 FNLGLSDEELEAYAATL-GADCAFFIRNKP-VYATG 148 (269)
T ss_pred hCCCcCHHHHHHHHHHh-CCCceEEccCCC-EEEEE
Confidence 46788999999999875 4455434 4555 45444
No 41
>cd06006 R3H_unknown_2 R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=51.92 E-value=53 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=23.0
Q ss_pred eehhHHHHHHHHHHHHHHcCCCeEEEEeccCCCeEEee
Q 023760 139 MNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIA 176 (277)
Q Consensus 139 ~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPNv~i~~ 176 (277)
||..-+++|+-+- +..|. ...++|.+||=+|+.
T Consensus 25 M~~~~R~~vHdla---~~~gl--~SeS~d~Ep~R~V~v 57 (59)
T cd06006 25 MRSPQRAFIHELA---KDYGL--YSESQDPEPKRSVFV 57 (59)
T ss_pred CCHHHHHHHHHHH---HHcCC--eeEecCCCCCcEEEE
Confidence 6677777665553 34566 589999999966654
No 42
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=44.73 E-value=13 Score=26.85 Aligned_cols=28 Identities=25% Similarity=0.557 Sum_probs=20.9
Q ss_pred CCCCCChHHHHHHHHhhc-------c-ccccccCCC
Q 023760 1 MNLKENQSQLSAIARQGS-------G-SACRSLFGG 28 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GS-------G-SAcRSi~GG 28 (277)
|++++++.+|.++|+.+- | -.+.++|||
T Consensus 32 ~~~~~~~~~l~~~a~~~e~~~g~~~g~d~~~~~~GG 67 (67)
T PF00288_consen 32 FGLPLSKEELAKLAQEAERYIGKPSGIDDAASAYGG 67 (67)
T ss_dssp TTTSSBHHHHHHHHHHHHHHCSSSHSHHHHHHHHCS
T ss_pred ccccccHHHHHHHHHHHHHHcCCCChhhHHHHHhCc
Confidence 577889999999999864 1 236677776
No 43
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=42.25 E-value=48 Score=33.17 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=53.7
Q ss_pred HHHhhhh--hhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhH-HHHHHHHHHHHHHcCCCeEEEE
Q 023760 89 HRAKEVV--PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS-HRIISYVERWNRSVGSPQVAYT 165 (277)
Q Consensus 89 ~r~~~~v--~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S-~~ii~~V~~~nr~~g~~~v~yT 165 (277)
.|+.+++ .+|..+..+|++++||.+||+|.+.. |+.|-|.| +.| ..+=.+|+......|.. .+=.
T Consensus 271 rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~S----H~slrddy-------evt~pElD~lve~a~~~~G~~-GaRm 338 (390)
T COG0153 271 RRARHVVTENQRVLEAAKALRSGDLTEFGELMNES----HESLRDDY-------EVTCPELDTLVEIALAAGGAY-GARM 338 (390)
T ss_pred HHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHhcc-------cccchhHHHHHHHHHHcCCcc-ccee
Confidence 4444433 34778888999999999999998544 66666654 111 12222343332233432 3334
Q ss_pred eccCCC--eEEeeecccCHHHHHHHHHhcCCC
Q 023760 166 FDAGPN--AVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 166 ~DAGPN--v~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
-=||=- +.-+.+ .++.+.+.+.|.+.+..
T Consensus 339 TGaGfGGc~IaLv~-~~~v~~~~e~v~~~y~~ 369 (390)
T COG0153 339 TGAGFGGCVIALVP-NDDVEAVAEAVAEEYEK 369 (390)
T ss_pred cCCCCCceEEEEec-hhhHHHHHHHHHHhHHh
Confidence 455554 344455 35566777777765543
No 44
>PLN02865 galactokinase
Probab=41.91 E-value=1.6e+02 Score=29.62 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=55.8
Q ss_pred HHHHhhhhhh--hHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeee-hhHHHHHHHHHHHHHHcCCCeEEE
Q 023760 88 QHRAKEVVPK--RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMN-DTSHRIISYVERWNRSVGSPQVAY 164 (277)
Q Consensus 88 ~~r~~~~v~~--~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n-~~S~~ii~~V~~~nr~~g~~~v~y 164 (277)
..|+.+++.+ |..+..+|++++|++.||++.- +-|..|.+-| ... ++.- .+|+..+...|.. -+=
T Consensus 297 ~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~----~sh~Slrd~y----evS~~eld---~lv~~a~~~~Ga~-GaR 364 (423)
T PLN02865 297 ARRAEHYFSENMRVIKGVEAWASGNLEEFGKLIS----ASGLSSIENY----ECGCEPLI---QLYEILLKAPGVY-GAR 364 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH----HhhhhHHhhc----cCCcHHHH---HHHHHHHhcCCCe-EEE
Confidence 3466555443 7788899999999999998874 4777766542 111 2222 3333333323432 222
Q ss_pred EeccC--CCeEEeeecccCHHHHHHHHHhcCCC
Q 023760 165 TFDAG--PNAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 165 T~DAG--PNv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
-.-+| .-+..|++ ++..+++++.+.+.|..
T Consensus 365 ~tGgGfGGc~vaLv~-~~~~~~~~~~v~~~Y~~ 396 (423)
T PLN02865 365 FSGAGFRGCCVAFVD-AEMAEEAASFVRDEYEK 396 (423)
T ss_pred EeccCCccEEEEEEc-hhHHHHHHHHHHHHHHh
Confidence 23333 34556666 46667888888877653
No 45
>PF05400 FliT: Flagellar protein FliT; InterPro: IPR008622 This entry represents the bacterial flagellar FliT family of dual-function proteins. Together with FlgN, FliT has been proposed to act as a substrate-specific export chaperone, facilitating the incorporation of the enterobacterial hook-associated axial proteins (HAPs) FlgK/FlgL and FliD into the growing flagellum []. FliT has also been shown to act as a transcriptional regulator in Salmonella typhimurium [].; GO: 0019861 flagellum; PDB: 3A7M_A 3H3M_B 3NKZ_C 2G42_A 2FZT_B.
Probab=38.10 E-value=1e+02 Score=22.40 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHH
Q 023760 102 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWN 154 (277)
Q Consensus 102 m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~n 154 (277)
|.+|++.+||+.|.++...=.--++.++-+..+.---..+.-...|+.|.+++
T Consensus 1 ml~aa~~~dWe~l~~l~~~R~~ll~~l~~~~~~~~~~~~~~~~~~l~~Il~~d 53 (84)
T PF05400_consen 1 MLEAAEAGDWEELEELLDERQELLERLFEEQAALSPPEQEELRELLRRILELD 53 (84)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHHHHHHHHCHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred ChHHHhhCcHHHHHHHHHHHHHHHHHHhhccccCChhhHHHHHHHHHHHHHhH
Confidence 67899999999999999887777777765212222223444455555555544
No 46
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=36.74 E-value=54 Score=31.83 Aligned_cols=10 Identities=40% Similarity=0.870 Sum_probs=7.7
Q ss_pred ceEEEcCCCC
Q 023760 245 NYFICTRPGG 254 (277)
Q Consensus 245 ~~~i~T~vG~ 254 (277)
.|+|+||||.
T Consensus 97 aYyIaTKvgR 106 (342)
T KOG1576|consen 97 AYYIATKVGR 106 (342)
T ss_pred heeeeeeeee
Confidence 3888888874
No 47
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=35.15 E-value=2.4e+02 Score=30.07 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHh-ccCCCCeEeeehh--HHHHHHHHHHHHHHcCCCeEEEEec-cC---------------------C
Q 023760 116 QLTCADSNQFHAVC-LDTSPPIFYMNDT--SHRIISYVERWNRSVGSPQVAYTFD-AG---------------------P 170 (277)
Q Consensus 116 ei~e~ds~~mHA~~-l~t~Ppi~Y~n~~--S~~ii~~V~~~nr~~g~~~v~yT~D-AG---------------------P 170 (277)
-|+|+.+..|-|-+ ...+.|++-+..+ -++.=+.||+. .-.+.| |-|-+| || |
T Consensus 364 GIAEQHAVT~AAGlA~~G~kPvvaIYSTFLQRAYDQliHDv-aiqnLP-V~faIDRAGivG~DG~TH~G~fDls~l~~iP 441 (627)
T COG1154 364 GIAEQHAVTFAAGLAAEGMKPVVAIYSTFLQRAYDQLIHDV-AIQNLP-VTFAIDRAGIVGADGPTHQGLFDLSFLRCIP 441 (627)
T ss_pred hhhHHHHHHHHHHHHhCCCCCEEEEecHHHHHHHHHHHHHH-HhccCC-eEEEEecCcccCCCCCccccHHHHHHHhcCC
Confidence 38899888887643 4567888644333 34455567776 334678 999999 66 9
Q ss_pred CeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccC
Q 023760 171 NAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLG 207 (277)
Q Consensus 171 Nv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g 207 (277)
|.+|+++. +++++...|...+--..+...-.|-+|
T Consensus 442 nmvi~aP~--de~el~~ml~ta~~~~~gP~AiRyPrg 476 (627)
T COG1154 442 NMVIMAPR--DEEELRQMLYTALAQDDGPVAIRYPRG 476 (627)
T ss_pred CcEEecCC--CHHHHHHHHHHHHhcCCCCeEEEecCC
Confidence 99999993 445788777776654322212345555
No 48
>COG4829 CatC1 Muconolactone delta-isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.62 E-value=21 Score=28.78 Aligned_cols=22 Identities=36% Similarity=0.780 Sum_probs=17.8
Q ss_pred HhHHHHHHHhccCCCCeEeeehh
Q 023760 120 ADSNQFHAVCLDTSPPIFYMNDT 142 (277)
Q Consensus 120 ~ds~~mHA~~l~t~Ppi~Y~n~~ 142 (277)
.|--.+|++ |++.|+|.|||++
T Consensus 59 dd~~eLh~~-L~~~P~f~ym~~~ 80 (98)
T COG4829 59 DDNGELHQL-LASMPPFSYMTDD 80 (98)
T ss_pred CchHHHHHH-HhcCCCccccccc
Confidence 455678988 7889999999964
No 49
>KOG4743 consensus Cyclin-dependent kinase inhibitor [Signal transduction mechanisms]
Probab=33.19 E-value=14 Score=33.61 Aligned_cols=11 Identities=64% Similarity=1.132 Sum_probs=8.8
Q ss_pred ccccccccCCC
Q 023760 18 SGSACRSLFGG 28 (277)
Q Consensus 18 SGSAcRSi~GG 28 (277)
--||||+|||.
T Consensus 15 ~~sAcR~LFGp 25 (195)
T KOG4743|consen 15 KSSACRCLFGP 25 (195)
T ss_pred cchHHHHhcCC
Confidence 45899999973
No 50
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=30.14 E-value=42 Score=26.36 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHHHHHHhcc
Q 023760 100 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLD 131 (277)
Q Consensus 100 ~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~ 131 (277)
++=++||.++|+.++..+.-+=-++||-.+++
T Consensus 38 ~eE~~aL~~~D~~~L~~lGvhp~L~mh~~~~~ 69 (81)
T cd07922 38 PAERAALREGTFGALTSIGVHPILQMHYLMYT 69 (81)
T ss_pred HHHHHHHHccCHHHHHHcCCCHHHHHHHHHHc
Confidence 44578999999999999999999999988765
No 51
>PF02624 YcaO: YcaO-like family; InterPro: IPR003776 This domain comprises the whole of a protein in Methanocaldococcus jannaschii (Methanococcus jannaschii) and Methanobacterium thermoautotrophicum, all but the N-terminal 60 residues from a protein of Mycobacterium tuberculosis, and all but the C-terminal 180 residues from a protein in Haemophilus influenzae and Escherichia coli, among proteins from published complete genomes.
Probab=29.37 E-value=1.9e+02 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHhHHHHHHHhccCCCCe-EeeehhHHHHHHHHHHHHHHcCC
Q 023760 112 SSFAQLTCADSNQFHAVCLDTSPPI-FYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 112 ~~fgei~e~ds~~mHA~~l~t~Ppi-~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
..+-|+.|+|+..++=......|.| .-.......+++.++++++ .|.
T Consensus 126 ~al~E~iERda~~~~w~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~ 173 (332)
T PF02624_consen 126 HALLEVIERDAFSLWWYNRLPPPRIDDVLDPTLPELLERLERLRE-AGL 173 (332)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeEecccCcCCHHHHHHHHHhhc-Cce
Confidence 4678999999999997777666666 5677778888888888743 444
No 52
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=28.53 E-value=50 Score=34.25 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=22.1
Q ss_pred cCCCeEEeeecccCHHHHHHHHHhcCCCC
Q 023760 168 AGPNAVLIARNRKIATELLQRLLFFFPPN 196 (277)
Q Consensus 168 AGPNv~i~~~~~~~~~~~~~~l~~~f~~~ 196 (277)
+|||++||..+ -+ +.+++.|.+.|+.-
T Consensus 163 ~GpniVIFVk~-l~-~~~l~lL~~TFGtL 189 (590)
T PF03410_consen 163 IGPNIVIFVKE-LN-PNILSLLSNTFGTL 189 (590)
T ss_pred cCCcEEEEEec-cC-HHHHHHHHHhcCCC
Confidence 69999999995 44 36999999999763
No 53
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=28.32 E-value=2.3e+02 Score=27.22 Aligned_cols=155 Identities=16% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCCCCChHHHHHHH-HhhccccccccCCCeeeeccCCCCCCCCceeEecC-CCCCCccceEEEEEEcCCCCCCCchHHHh
Q 023760 1 MNLKENQSQLSAIA-RQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLV-DEEHWNDLVIIIAVVSSRQKETSSTTGMR 78 (277)
Q Consensus 1 ~~l~~~~~~lS~lA-R~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~-~~~hw~~l~~ii~vvs~~~K~vsSt~GM~ 78 (277)
++++++.+||..|| |+||==. =-++ |-..+-.|-. ..=+++. ++..| ++++-+ .-.||+.+--+
T Consensus 118 w~~~ls~~eL~~Lg~~LGaDVP-ffl~-g~tA~a~G~G-----E~l~~~~~~~~~~-----~vl~~P--~v~vsT~~vy~ 183 (289)
T COG1947 118 WGLGLSLEELAELGLRLGADVP-FFLS-GGTAFAEGRG-----EKLEPLEDPPEKW-----YVLAKP--GVGVSTKEVYK 183 (289)
T ss_pred hCCCCCHHHHHHHHHHhCCCcC-eeee-CCceEEEEcc-----ceeeECCCCCCce-----EEEEeC--CCCCChHHHHc
Confidence 46789999998887 6665321 1223 2233333321 1223343 12333 333433 35555544332
Q ss_pred hhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcC
Q 023760 79 ESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG 158 (277)
Q Consensus 79 ~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g 158 (277)
.+-.. | ....-..+..++..+++..+.+... |.|-+.++..+|.+- +....+ ++.|
T Consensus 184 -----~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~---NdLe~~~~~~~p~v~----------~~~~~l-~~~g 239 (289)
T COG1947 184 -----DPELT-R----NTPKSEPLIAALSLENLKQIAPFLI---NDLEKVALRLYPEVK----------EALSEL-LEYG 239 (289)
T ss_pred -----CcCcc-c----ccCCchhhhHHHhhhhHhhhccccc---cchHHHHHHhChHHH----------HHHHHH-hhcc
Confidence 22222 1 1223444555666666665554443 778889999887542 222223 3334
Q ss_pred CCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 159 SPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 159 ~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
-. ..+=-=.||-|+-+|.+++..+.+.+.+.+.++
T Consensus 240 a~-~~~mSGSGstvF~l~~~~~~a~~~~~~l~~~~~ 274 (289)
T COG1947 240 AL-PARMSGSGSTVFALFDTEKEAQRVAEQLPKGVC 274 (289)
T ss_pred cc-cceEecCCCcEEEEeCChHHHHHHHHHhhcccC
Confidence 32 344456789999999976666666666665444
No 54
>PRK03057 hypothetical protein; Provisional
Probab=28.17 E-value=81 Score=28.22 Aligned_cols=63 Identities=13% Similarity=0.266 Sum_probs=39.5
Q ss_pred CCccceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhhhhh--------------------hhHHHHHHHHHcCCHH
Q 023760 53 HWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP--------------------KRIVQMEEAIQNHDFS 112 (277)
Q Consensus 53 hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~v~--------------------~~~~~m~~AI~~~Df~ 112 (277)
+|.+=-.|-|.+.+..+ +-.=+ .-.+.+|+++.|..+... +-+..+-.|+..||.+
T Consensus 88 N~~~~iYIql~F~~~~~---~~~yl-~vLe~np~~~~~~~~~~~~~~~~ae~~L~~~~~~~~~~~L~~~ID~ALd~~D~e 163 (180)
T PRK03057 88 NPNEPLYLILHFPGKAR---NHSYL-QLLDHQAFENVKRHKQFQKYAKETEQVLDEVLKRNEVSRLRMQIDQALDRKDME 163 (180)
T ss_pred CCCCCeEEEEeCCCccc---ChHHH-HhhhcCCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 45433344455544432 34444 346999999877644221 2236677889999999
Q ss_pred HHHHHHH
Q 023760 113 SFAQLTC 119 (277)
Q Consensus 113 ~fgei~e 119 (277)
.|-+|++
T Consensus 164 ~F~~Lt~ 170 (180)
T PRK03057 164 EFQRLTE 170 (180)
T ss_pred HHHHHHH
Confidence 9999985
No 55
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=27.77 E-value=70 Score=27.44 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=10.1
Q ss_pred eEEEEeccCCC
Q 023760 161 QVAYTFDAGPN 171 (277)
Q Consensus 161 ~v~yT~DAGPN 171 (277)
.|+.|||-||.
T Consensus 7 ~V~LTFDDgp~ 17 (191)
T TIGR02764 7 KIALTFDISWG 17 (191)
T ss_pred EEEEEEECCCC
Confidence 49999999997
No 56
>PF04788 DUF620: Protein of unknown function (DUF620); InterPro: IPR006873 This is a family of uncharacterised proteins.
Probab=27.53 E-value=55 Score=30.72 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=48.0
Q ss_pred ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhhhhhhhH
Q 023760 20 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 99 (277)
Q Consensus 20 SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~ 99 (277)
....+--||||.|++. |||-.+=+||+.. |-+.=.+| +-+-.-+|....-+.. --.
T Consensus 26 ~~~~~e~GgFVlWQ~~-------------------Pd~W~~ELvVgG~-KV~AGsdG-kvaWR~Tpw~g~HAak---Gp~ 81 (245)
T PF04788_consen 26 PTGGGEKGGFVLWQMN-------------------PDMWYLELVVGGC-KVSAGSDG-KVAWRHTPWQGSHAAK---GPP 81 (245)
T ss_pred cCcccccccEEEEEeC-------------------CCeEEEEEEecce-EEeeccCC-eeeeecCccccchhhc---CCC
Confidence 4457889999999987 3444788888855 55444455 4566677777655543 345
Q ss_pred HHHHHHHHcCCHHHHHH
Q 023760 100 VQMEEAIQNHDFSSFAQ 116 (277)
Q Consensus 100 ~~m~~AI~~~Df~~fge 116 (277)
.-++.+++.=|-...+.
T Consensus 82 RPLRR~lQGLDPr~ta~ 98 (245)
T PF04788_consen 82 RPLRRFLQGLDPRSTAN 98 (245)
T ss_pred chHHHHHhhcChhhHHH
Confidence 66777887666655443
No 57
>PHA03081 putative metalloprotease; Provisional
Probab=26.90 E-value=55 Score=33.97 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=22.1
Q ss_pred cCCCeEEeeecccCHHHHHHHHHhcCCCC
Q 023760 168 AGPNAVLIARNRKIATELLQRLLFFFPPN 196 (277)
Q Consensus 168 AGPNv~i~~~~~~~~~~~~~~l~~~f~~~ 196 (277)
+|||++||..+ -+ +.+++.|.+.|+.-
T Consensus 163 ~GpniVIFVk~-ln-~~~l~lL~~TFGtL 189 (595)
T PHA03081 163 SGPNIVIFVKE-LN-PNTLSLLNNTFGTL 189 (595)
T ss_pred cCCcEEEEEec-cC-HHHHHHHHHhcCCC
Confidence 69999999995 43 36899999999763
No 58
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=26.83 E-value=71 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.7
Q ss_pred hHHHHHHHHHcCCHHHHHHHHHHhHHH
Q 023760 98 RIVQMEEAIQNHDFSSFAQLTCADSNQ 124 (277)
Q Consensus 98 ~~~~m~~AI~~~Df~~fgei~e~ds~~ 124 (277)
-+.+|++||+++|-++|.+.+.-++.+
T Consensus 16 al~~i~~Ai~~~D~~~l~~~VD~~avr 42 (95)
T PF11159_consen 16 ALYQIRQAIQAHDAAALARYVDFPAVR 42 (95)
T ss_pred HHHHHHHHHHHcCHHHHHHHcCHHHHH
Confidence 367889999999999999998766654
No 59
>PRK10770 peptidyl-prolyl cis-trans isomerase SurA; Provisional
Probab=23.38 E-value=2e+02 Score=27.88 Aligned_cols=101 Identities=16% Similarity=0.175 Sum_probs=53.0
Q ss_pred HHHHHHHhhccccccccCCCeeeeccCCCCC----------CCCceeEecCCCCCCccceEEEEEEcCCCCCCCc-----
Q 023760 9 QLSAIARQGSGSACRSLFGGFVKWILGKEGN----------GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSS----- 73 (277)
Q Consensus 9 ~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~d----------g~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsS----- 73 (277)
+.+.+||.-|-... ..-||..-|.....-. ....+..|+.....| +||-+.+.. .....
T Consensus 193 ~F~~lA~~yS~~~~-a~~gGdlg~~~~~~l~~~~~~~~~~l~~G~is~Pi~t~~Gy----hIikl~~~~-~~~~~~~~~e 266 (413)
T PRK10770 193 DFGKLAIAYSADQQ-ALKGGQMGWGRIQELPGLFAQALSTAKKGDIVGPIRSGVGF----HILKVNDLR-GESQNISVTE 266 (413)
T ss_pred CHHHHHHHhCCCcc-cccCCcCCccccccccHHHHHHHHhCCCCCCCCcEECCCce----EEEEEeeec-cccccchHHh
Confidence 46778898888655 4679998896442111 111233455444344 444444433 22111
Q ss_pred hHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcC--CHHHHHHHH
Q 023760 74 TTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNH--DFSSFAQLT 118 (277)
Q Consensus 74 t~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~--Df~~fgei~ 118 (277)
..--|..+.+++.... + .+.+++..++++|+++ +|+.+++--
T Consensus 267 ~~~~hIli~~~~~~~~--~-~a~~~~~~i~~~i~~g~~~F~~~A~~~ 310 (413)
T PRK10770 267 VHARHILLKPSPIMTD--E-QARAKLEQIAADIKSGKTTFAAAAKEF 310 (413)
T ss_pred hhhhheEECCCCCCCH--H-HHHHHHHHHHHHHHcCcccHHHHHHHh
Confidence 1122233334333211 1 2467888999999986 666655543
No 60
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=22.85 E-value=1e+02 Score=26.68 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCC-CeEeeehhHHHHHHHHHHHHH
Q 023760 96 PKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSP-PIFYMNDTSHRIISYVERWNR 155 (277)
Q Consensus 96 ~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~P-pi~Y~n~~S~~ii~~V~~~nr 155 (277)
-++|.++-+||++|||+ .++++|--++...- -+--|-..-.++|...+.++.
T Consensus 91 ~~~L~~L~~aL~~~d~~--------~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~~~r~~~~ 143 (157)
T PF07304_consen 91 VDKLHQLAQALQARDYD--------AADEIHVDLMTDHVDECGNWMVGVKRLIAMARNLPP 143 (157)
T ss_dssp HHHHHHHHHHHHHT-HH--------HHHHHHHHHHHSSHHHHTTTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHH--------HHHHHHHHHHhccHHHhhhHHHHHHHHHHHHHhcCc
Confidence 34555555666666664 46777777665421 122334445677777777653
No 61
>PF05139 Erythro_esteras: Erythromycin esterase; InterPro: IPR007815 This family includes erythromycin esterase enzymes [, ] that confer resistance to the erythromycin antibiotic.; GO: 0046677 response to antibiotic; PDB: 2QGM_A 3B55_A 2RAD_B.
Probab=22.79 E-value=1.1e+02 Score=28.73 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=37.6
Q ss_pred hccCCCCeEeeehhHHHHHHHHHHHHHH--cCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCC
Q 023760 129 CLDTSPPIFYMNDTSHRIISYVERWNRS--VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 129 ~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~--~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
.+...+--+|-|++.+.++++++++|+. .+.+.-+|=||.- .. ....+.|++.|...-|.
T Consensus 29 ~~~~~~~~~w~t~E~~~L~~WmR~~N~~~~~~~~v~f~G~D~q------~~-~~s~~~v~~yl~~~~p~ 90 (346)
T PF05139_consen 29 ALKGFSFWFWRTEEMLDLFEWMREYNEDRPPGDKVRFYGFDMQ------SP-PPSFDAVLDYLKKVDPE 90 (346)
T ss_dssp ---GTS-CCC-CHHHHHHHHHHHHHHHSTT-SS--EEEEEE-S---------HHHHHHHHHHHHHCHCC
T ss_pred hhccCCccccCcHHHHHHHHHHHHHhccCCCCCceEEEEeccc------ch-HHHHHHHHHHHHHhChH
Confidence 3455566788899999999999999986 2666578889987 33 24445677777766554
No 62
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=21.92 E-value=7.7e+02 Score=24.27 Aligned_cols=150 Identities=17% Similarity=0.105 Sum_probs=84.6
Q ss_pred cCCCeeeeccCCCCCCCCceeEecCCCCCC--ccceEEEEEEcCCCCCCCchHHHhhhhhcCccH----HHHHhhhhhhh
Q 023760 25 LFGGFVKWILGKEGNGSDSLAVQLVDEEHW--NDLVIIIAVVSSRQKETSSTTGMRESVETSLLL----QHRAKEVVPKR 98 (277)
Q Consensus 25 i~GGfV~W~~G~~~dg~dS~A~~v~~~~hw--~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~----~~r~~~~v~~~ 98 (277)
.||||--.+=.. | .+-+-.|+.- ..| .+|+.=++++=.+.+..||--=+++ +...--= ..-..+ ..+.
T Consensus 156 A~GGFnfMEf~~--~-~~V~v~pL~i-~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ-~~~~~~~~~~~~e~~~~-mk~~ 229 (333)
T COG2605 156 AFGGFNFMEFRG--N-GEVVVNPLRI-NRERTAELEARLLLYYTGITRQSSEVIEDQ-VRNVVDGDEETLEALHE-MKAL 229 (333)
T ss_pred HhCCceEEEEcC--C-CcEEEeeccc-chhHHHHHHhceEEEEeccccchhHHHHHH-HHHhhcccHHHHHHHHH-HHHH
Confidence 589995554332 1 2234455532 233 5566656666666566555443322 1111110 001111 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCCC--eEEee
Q 023760 99 IVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN--AVLIA 176 (277)
Q Consensus 99 ~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPN--v~i~~ 176 (277)
..+|++|+-..|+..||++.-+... +-.. |++ ..|-..|+.+-++-.+.|-. ..=++=||-. ..+||
T Consensus 230 A~~~~~al~~nd~~~f~~~l~~gW~-~KK~-ls~--------~ISN~~IDriy~~A~~~GA~-~gKl~GaG~gGFllf~~ 298 (333)
T COG2605 230 AYEMKDALVRNDIPEFGQILDRGWE-AKKK-LSS--------RISNDAIDRIYELALKNGAY-GGKLSGAGGGGFLLFFC 298 (333)
T ss_pred HHHHHHHHHhcchHHHHHHHHhHHH-hhhh-hcc--------CcCcHHHHHHHHHHHhcCch-hceeeccCCccEEEEEe
Confidence 6788999999999999999865543 3333 333 23455666666654555554 5668999998 55556
Q ss_pred ecccCHHHHHHHHHhc
Q 023760 177 RNRKIATELLQRLLFF 192 (277)
Q Consensus 177 ~~~~~~~~~~~~l~~~ 192 (277)
+ .....+|...|...
T Consensus 299 ~-p~k~~~l~r~l~~~ 313 (333)
T COG2605 299 D-PSKRNELARALEKE 313 (333)
T ss_pred C-ccchHHHHHHHHHh
Confidence 6 45556677777654
No 63
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=21.66 E-value=1.4e+02 Score=21.49 Aligned_cols=25 Identities=24% Similarity=0.569 Sum_probs=21.9
Q ss_pred hhhhhHHHHHHHH---HcCCHHHHHHHH
Q 023760 94 VVPKRIVQMEEAI---QNHDFSSFAQLT 118 (277)
Q Consensus 94 ~v~~~~~~m~~AI---~~~Df~~fgei~ 118 (277)
.+++++..|++++ ..+|++.+.+.+
T Consensus 9 ~~~~~~~~l~~~~~~~~~~d~~~l~~~~ 36 (90)
T PF01627_consen 9 EAPEDLEQLEQALQALEQEDWEELRRLA 36 (90)
T ss_dssp HHHHHHHHHHHHHCSSHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHHHH
Confidence 3788999999999 888999998775
No 64
>PF10685 KGG: Stress-induced bacterial acidophilic repeat motif; InterPro: IPR019626 This repeat contains a highly conserved, characteristic sequence motif, KGG, that is recognised by plants and lower eukaryotes. Further downstream from this motif is a Walker A, nucleotide binding motif. YciG is expressed as part of a three-gene operon, yciGFE and this operon is induced by stress and is regulated by RpoS, which controls the general stress-response in E coli. YciG was shown to be important for stationary-phase resistance to thermal stress and in particular to acid stress [].
Probab=21.56 E-value=76 Score=19.34 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=13.9
Q ss_pred CCChHHHHHHHHhhccc
Q 023760 4 KENQSQLSAIARQGSGS 20 (277)
Q Consensus 4 ~~~~~~lS~lAR~GSGS 20 (277)
+.|+++.+.|+|.|+=+
T Consensus 4 ~~d~e~~~eig~kGG~a 20 (23)
T PF10685_consen 4 SMDPEKAREIGRKGGQA 20 (23)
T ss_pred ccCHHHHHHHHHhcCcc
Confidence 35889999999999744
No 65
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.50 E-value=3.6e+02 Score=24.53 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=30.4
Q ss_pred ccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccCCC
Q 023760 130 LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPN 171 (277)
Q Consensus 130 l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAGPN 171 (277)
-...|-|..=-+.+-.++++..+-+ ..|.+ .++++|||=+
T Consensus 121 ~~GQ~KIvvk~~~e~~l~~l~~~A~-~~gl~-t~~i~DAGrT 160 (190)
T KOG3282|consen 121 NCGQAKIVVKAESEEELMELQKDAK-KLGLY-THLIQDAGRT 160 (190)
T ss_pred HcCCceEEEEcCCHHHHHHHHHHHH-HcCCc-EEEEEcCCcc
Confidence 3467788877777788888887764 46887 8999999943
No 66
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=21.15 E-value=1.1e+02 Score=27.47 Aligned_cols=26 Identities=23% Similarity=0.223 Sum_probs=17.2
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHhc
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~ 192 (277)
..|+-|||-||+. ...++++..|+++
T Consensus 37 k~VaLTFDDGp~~-------~~t~~lL~~L~~~ 62 (224)
T TIGR02884 37 KVIYLTFDNGYEN-------GYTPKILDVLKEK 62 (224)
T ss_pred CEEEEEEECCCCc-------cchHHHHHHHHHc
Confidence 3599999999952 2233566666664
No 67
>PRK08655 prephenate dehydrogenase; Provisional
Probab=20.81 E-value=2.4e+02 Score=28.03 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHH
Q 023760 95 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFH 126 (277)
Q Consensus 95 v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mH 126 (277)
..+.+.+++++|+++|.+.|.++.++-...+.
T Consensus 241 ~~~~l~~l~~~l~~~D~~~l~~~~~~a~~~~~ 272 (437)
T PRK08655 241 FIKECEELSELVKNGDREEFVERMKEAAKHFG 272 (437)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 45678889999999999999999776666665
Done!