Query 023760
Match_columns 277
No_of_seqs 198 out of 513
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 12:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f0n_A Mevalonate pyrophosphat 100.0 5.3E-65 1.8E-69 492.2 23.5 252 7-276 159-412 (414)
2 1fi4_A Mevalonate 5-diphosphat 100.0 1.5E-45 5E-50 354.4 23.5 257 1-276 156-415 (416)
3 2hke_A Diphosphomevalonate dec 100.0 4.1E-45 1.4E-49 346.7 25.0 245 8-269 134-380 (380)
4 3lto_A Mevalonate diphosphate 100.0 1.8E-43 6E-48 332.3 20.6 181 1-195 129-310 (323)
5 3qt5_A Mevalonate diphosphate 100.0 9.8E-38 3.4E-42 291.9 21.9 188 1-194 127-314 (332)
6 2gs8_A Mevalonate pyrophosphat 100.0 3.1E-27 1.1E-31 216.6 22.3 178 1-191 125-302 (317)
7 1h72_C HK, homoserine kinase; 99.1 3E-10 1E-14 101.9 11.7 165 1-194 109-282 (296)
8 2oi2_A Mevalonate kinase; enzy 99.0 1.4E-08 4.7E-13 90.5 18.5 167 1-194 107-284 (292)
9 2hfs_A Mevalonate kinase, puta 98.8 8.9E-08 3.1E-12 87.2 16.5 171 1-195 130-315 (332)
10 2cz9_A Probable galactokinase; 98.7 1.4E-07 4.6E-12 86.3 14.1 175 1-193 120-329 (350)
11 2x7i_A Mevalonate kinase; tran 98.7 8.6E-08 2.9E-12 86.5 12.3 166 1-194 119-298 (308)
12 3hul_A HSK, HK, homoserine kin 98.7 1.2E-07 4E-12 87.0 12.2 166 1-194 104-272 (298)
13 1wuu_A Galactokinase; galactos 98.6 2.4E-06 8.2E-11 80.4 17.3 172 1-193 164-379 (399)
14 1pie_A Galactokinase; galactos 98.5 2.6E-06 9E-11 80.8 16.4 172 1-193 174-394 (419)
15 2v8p_A 4-diphosphocytidyl-2-C- 98.4 4.4E-07 1.5E-11 81.2 7.4 144 1-186 114-259 (271)
16 1kkh_A Mevalonate kinase; mixe 98.2 2.2E-05 7.5E-10 70.9 13.4 159 1-191 132-305 (317)
17 1kvk_A MK, mevalonate kinase; 97.7 0.0008 2.7E-08 63.0 15.0 157 7-193 179-360 (395)
18 3k17_A LIN0012 protein; protei 97.4 0.0012 4.2E-08 61.9 12.0 174 1-191 135-341 (365)
19 4hac_A Mevalonate kinase; GHMP 97.4 0.0051 1.7E-07 56.3 15.9 160 1-192 130-304 (321)
20 2pg9_A Phosphomevalonate kinas 97.3 0.0031 1.1E-07 58.2 13.6 170 1-191 124-320 (337)
21 1uek_A 4-(cytidine 5'-diphosph 97.3 0.00021 7.1E-09 63.6 4.9 147 1-190 109-255 (275)
22 2ww4_A 4-diphosphocytidyl-2C-m 97.1 0.0003 1E-08 63.6 3.4 140 1-189 122-261 (283)
23 3pyf_A 4-diphosphocytidyl-2-C- 96.9 0.0022 7.4E-08 58.8 7.8 161 1-192 121-281 (306)
24 3k85_A D-glycero-D-manno-hepto 96.1 0.0067 2.3E-07 56.5 5.7 172 1-191 131-321 (357)
25 3gon_A Phosphomevalonate kinas 95.5 0.31 1.1E-05 43.3 13.9 170 1-191 122-318 (335)
26 2a2c_A N-acetylgalactosamine k 92.3 3.1 0.0001 40.0 14.8 86 97-195 360-450 (478)
27 3v2u_C Protein GAL3; rossmann 83.4 5.9 0.0002 39.1 10.2 95 87-194 382-490 (520)
28 3myf_A Sensor protein; HPT, hi 44.0 25 0.00087 27.4 4.3 40 86-130 25-64 (119)
29 1sr2_A Putative sensor-like hi 35.9 31 0.001 27.0 3.6 39 79-118 29-67 (116)
30 1jsu_C P27, KIP1, CIP2; comple 29.0 14 0.00049 28.0 0.5 9 20-28 5-13 (84)
31 2r25_A Phosphorelay intermedia 27.4 65 0.0022 27.2 4.4 32 86-118 31-63 (167)
32 2a0b_A HPT domain; sensory tra 27.1 73 0.0025 24.3 4.4 32 86-118 32-63 (125)
33 3kl4_B DPAP B, YSCV, signal pe 26.8 11 0.00036 24.7 -0.5 11 14-24 1-11 (42)
34 3us6_A Histidine-containing ph 25.4 63 0.0022 26.3 3.9 32 86-118 45-78 (153)
35 3iqt_A Signal transduction his 22.1 46 0.0016 26.2 2.3 40 86-130 34-73 (123)
36 2od0_A Hypothetical protein VP 21.6 26 0.00089 26.6 0.7 25 11-36 11-35 (105)
37 3u43_A Colicin-E2 immunity pro 21.1 1.2E+02 0.004 23.4 4.4 63 95-160 11-81 (94)
38 2f86_B Hypothetical protein K1 20.8 1.1E+02 0.0038 24.2 4.4 34 95-142 14-47 (143)
39 2y8u_A Chitin deacetylase; hyd 20.3 76 0.0026 27.1 3.5 25 160-192 33-57 (230)
No 1
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=100.00 E-value=5.3e-65 Score=492.23 Aligned_cols=252 Identities=48% Similarity=0.809 Sum_probs=226.8
Q ss_pred hHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhhcCcc
Q 023760 7 QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLL 86 (277)
Q Consensus 7 ~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl 86 (277)
..+|++|||+||||+|||+|||||.|.+|...|+.||+|+++.++.|||+|+++++|+++.+|+++||+||++++.||++
T Consensus 159 ~~el~~lA~~~sGs~~~s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~ 238 (414)
T 3f0n_A 159 EGDLSEVARRGSGSACRSLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTL 238 (414)
T ss_dssp CSCCHHHHHHHCGGGGGGGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHhCCCcchHhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCcc
Confidence 47899999999999999999999999999888899999999988889999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc-CCCeEEEE
Q 023760 87 LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYT 165 (277)
Q Consensus 87 ~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~-g~~~v~yT 165 (277)
|++|+++++++++..|+.||+++||+.|++++|+|+++|||+|++++||++||++.|++||+.|+++|+.. |.. +|||
T Consensus 239 ~~~~v~~~~~~~~~~l~~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~t 317 (414)
T 3f0n_A 239 LKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYT 317 (414)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEE
Confidence 99999965699999999999999999999999999999999999999999999999999999999998765 666 9999
Q ss_pred eccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhccCCCcccccCCCCCcccc-ccccccCCCCc
Q 023760 166 FDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDV 244 (277)
Q Consensus 166 ~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~v 244 (277)
|||||||++||++ ++.++|++.|++.|++.++ +++|++|.+ ++...+++++. .+..++.+++|
T Consensus 318 sdAGPnv~vl~~~-~~~~~v~~~l~~~f~~~~~--~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 381 (414)
T 3f0n_A 318 FDAGPNAVIFTLE-DTVAEFVAAVRHSFPPAAN--GDKFLKGLQ-------------VAPVLLSDELKAALVVEPSPGGV 381 (414)
T ss_dssp CCSSSCEEEEEEH-HHHHHHHHHHHHHSCCSCC----CCEEESC-------------CCCCCCCHHHHHHSCSSCCTTSE
T ss_pred ECCCCCEEEEEec-ccHHHHHHHHHHhcCCCCC--cccccccCc-------------cccccCChhhhhcccccccCCce
Confidence 9999999999995 7778999999999998766 457877743 33344455665 66666789999
Q ss_pred ceEEEcCCCCCCeecCCCCccccCCCCCCCCC
Q 023760 245 NYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 276 (277)
Q Consensus 245 ~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~p~~ 276 (277)
+|||||+||+||+++.++++|||++ +|+||.
T Consensus 382 ~~~i~t~~g~gp~~~~~~~~~l~~~-~g~~~~ 412 (414)
T 3f0n_A 382 QYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQR 412 (414)
T ss_dssp EEEEEEEBCCCCEEECCGGGCSBCT-TSSBC-
T ss_pred eEEEECCCCCCCEECCchhHhcCCC-CCCcCC
Confidence 9999999999999999889999998 999985
No 2
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=100.00 E-value=1.5e-45 Score=354.44 Aligned_cols=257 Identities=41% Similarity=0.622 Sum_probs=215.2
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||++++.++|++|||+||||+|||+|||||.|..|...|+.+++++++....+||+++++++|++...|.++||.+|++.
T Consensus 156 ~gl~Ls~~eLa~lA~~g~Gs~~~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~p~l~~vvlv~~~~~~~~sst~~~~~~ 235 (416)
T 1fi4_A 156 YQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLT 235 (416)
T ss_dssp TTCCSCHHHHHHHHHHHHGGGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGSTTEEEEEEEECCCSCCCCHHHHHHHH
T ss_pred hCCCCCHHHHHHHHhccCCchheEeeCCcEEEecCCcCCCCCceeEEecCccCCcccEEEEEEECCCCCCcCCHHHHHHH
Confidence 68899999999999999999999999999999988655677899999976677999999999999999999999999999
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcC-C
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG-S 159 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g-~ 159 (277)
+.++++|+.|+++++..++..|+.||+++||+.|+++++.|++.||+++++++|++.||++.+.++++.++++|...| .
T Consensus 236 ~~~~~~~~~~~~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~~Ga~ 315 (416)
T 1fi4_A 236 VATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGET 315 (416)
T ss_dssp HHHCSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSC
T ss_pred hhcCHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHhcCCc
Confidence 999999999998756899999999999999999999999999999999999999999999999999999999965357 6
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccch-hhhccCCCcccccCCCCCcccc-cccc
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSI-LRDAGIDGMKDIEALPLPPEIN-NISA 237 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~-l~~~g~~~~~~~~~~~~~~~~~-~~~~ 237 (277)
. ++|++||||||++||.+ ++.+++.+.+.+.|+.... |..+...+ ++. +....++.++. .+..
T Consensus 316 ~-~a~~SGaGPtv~al~~~-~~~~~v~~~l~~~~~~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 380 (416)
T 1fi4_A 316 I-VAYTFDAGPNAVLYYLA-ENESKLFAFIYKLFGSVPG-----WDKKFTTEQLEA--------FNHQFESSNFTARELD 380 (416)
T ss_dssp C-EEEEECSSSCEEEEEEG-GGHHHHHHHHHHHHTTSTT-----STTTCCHHHHHH--------HHHHHHTSCCCSSCCC
T ss_pred e-EEEEecCCCcEEEEECH-HHHHHHHHHHHHhcccccc-----cccccccccccc--------ccccCCChhhhhhccc
Confidence 6 89999999999999995 5667899999999983322 21111111 111 10011233444 4444
Q ss_pred ccCCCCcceEEEcCCCCCCeecCCCCccccCCCCCCCCC
Q 023760 238 QKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 276 (277)
Q Consensus 238 ~~~~~~v~~~i~T~vG~GP~~l~~~~~~Ll~~~~g~p~~ 276 (277)
++.+++|+|||||+||+||+++ +++||++ +|+|+.
T Consensus 381 ~~~~~~~~~~i~~~~g~gp~~~---~~~~~~~-~~~~~~ 415 (416)
T 1fi4_A 381 LELQKDVARVILTQVGSGPQET---NESLIDA-KTGLPK 415 (416)
T ss_dssp SSGGGGEEEEEEEEBCCCCEEC---SCCSSCS-SSCC--
T ss_pred cccCCCceEEEECCCCCChhhh---HHhccCC-CCCCCC
Confidence 5668999999999999999998 4899998 788875
No 3
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=100.00 E-value=4.1e-45 Score=346.72 Aligned_cols=245 Identities=36% Similarity=0.651 Sum_probs=213.1
Q ss_pred HHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhhhhcCccH
Q 023760 8 SQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLL 87 (277)
Q Consensus 8 ~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~ 87 (277)
++|++|||+||||+|||+|||||.|..|...++.+++++++.+..+||+++++++|++..+|.++||.+|++.+.++++|
T Consensus 134 ~eL~~lA~~g~Gsva~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~p~l~~~vlv~~~~~~~~sst~~~r~~~~~~~~~ 213 (380)
T 2hke_A 134 TNVSMLARLGSGSACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPLM 213 (380)
T ss_dssp SCHHHHHHHHCGGGGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSCTTEEEEEEECCCCSCCCCHHHHHHHHHHHCTTH
T ss_pred HHHHHHHhhcCcceeeehhCCeEEEecCCCCCCCcceEEeccCcccCCcceEEEEEecCCCCCCCCHHHHHHHHhcChhH
Confidence 88999999999999999999999999887667788999999877789999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcC-CCeEEEEe
Q 023760 88 QHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVG-SPQVAYTF 166 (277)
Q Consensus 88 ~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g-~~~v~yT~ 166 (277)
+.|+++++..++..|+.||.++||+.|++++|+|++.||++|++++|++.||++.+.+|++.++++|+..| .. ++|++
T Consensus 214 ~~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~~Ga~~-~a~~S 292 (380)
T 2hke_A 214 KKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAKKGRTA-LAYTF 292 (380)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHhcCCcc-eEEEE
Confidence 99998646889999999999999999999999999999999999999999999999999999999976548 66 89999
Q ss_pred ccCCCeEEeeecccCHHHHHHHHHhcCCCCCCcCccccccCccchhhhccCCCcccccCCCCCcccc-ccccccCCCCcc
Q 023760 167 DAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVN 245 (277)
Q Consensus 167 DAGPNv~i~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~g~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~ 245 (277)
||||||++||.+ ++.+++.+.+++.|+... +.|..++.++++. +.....|.++. .+. +.+++|+
T Consensus 293 GaGPtv~~l~~~-~~~~~v~~~l~~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~ 357 (380)
T 2hke_A 293 DAGANCFLFVLK-EDLPEAVAMLMEHFPTPF----EKFFFGDRELLEK--------VKVVSLPDEYKKLID--HPKKPFE 357 (380)
T ss_dssp CSSSCEEEEEEG-GGHHHHHHHHHHHSCCCG----GGEEESCHHHHHH--------HHHCCCCGGGSSCSC--CCCCCCS
T ss_pred CCCCcEEEEECH-HHHHHHHHHHHHhccccc----ccccccchhhhcc--------ccccCCChhhhhhhh--ccCCCce
Confidence 999999999995 567789999999998652 2555555555443 22233455655 343 6789999
Q ss_pred eEEEcCCCCCCeecCCCCccccCC
Q 023760 246 YFICTRPGGGPVLLSDDSKALLNP 269 (277)
Q Consensus 246 ~~i~T~vG~GP~~l~~~~~~Ll~~ 269 (277)
|||+|+||+||++| ++++||||+
T Consensus 358 ~~~~~~~g~g~~~~-~~~~~~~~~ 380 (380)
T 2hke_A 358 MLLQSPVGCGVKYL-GPSESLIPP 380 (380)
T ss_dssp EEEEEEBCCCCEEE-CGGGCSSCC
T ss_pred EEEEcCCCCCCEec-CchhhccCc
Confidence 99999999999999 578999974
No 4
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=100.00 E-value=1.8e-43 Score=332.29 Aligned_cols=181 Identities=24% Similarity=0.350 Sum_probs=170.2
Q ss_pred CCCCC-ChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKE-NQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~-~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
||+++ +++||++|||+||||+|||+|||||.|..| ++++|. .+||+++++++++++.+|+|||++||+.
T Consensus 129 ~gl~l~s~~eL~~lA~~gsGsaa~si~GG~v~~~~g--------~~~~l~--~~~~~l~~~v~vi~~~~~~vsT~~~~~~ 198 (323)
T 3lto_A 129 TQKPLPSIDEQAQLSRLGSGSSCRSFYAPWALWTGD--------KVSAID--LPYKDLLHQVIVISSQEKEIPSRVAHKL 198 (323)
T ss_dssp HTCCCCCHHHHHHHHHTTCGGGGGGGSCSEEEEETT--------EEEECC--CSCCSCEEEEEECCCCTTCCCHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHhCCCcchhhhCCEEEEecC--------cEEEcc--CCCCCCeEEEEEECCCCCCCCCHHHHhh
Confidence 58899 999999999999999999999999999877 788884 5699999999999999999999999988
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
+.++|+|++|+++ +..++..|++||+++||+.|++++|.|+|.||++|++++||++||++.|++||+.|+++|++.|.
T Consensus 199 -l~~~~~~~~~~~~-~~~~~~~l~~AL~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~ 276 (323)
T 3lto_A 199 -VKTSPFYETRSER-AEANLKLLLNAFENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGD 276 (323)
T ss_dssp -GGGSTTTTTHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSC
T ss_pred -cccChhHHHHHHH-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCC
Confidence 8999999999986 78999999999999999999999999999999999999999999999999999999999867788
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCCC
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
. +|||+||||||++||++ ++.++|.+.|.+.|+.
T Consensus 277 ~-~~~tsgAGPnv~~l~~~-~~~~~v~~~l~~~~~~ 310 (323)
T 3lto_A 277 G-PVVTMDAGPNVHLLYRS-DQTDLARQFKSDHLVG 310 (323)
T ss_dssp C-CEEECCSSSCEEEEECG-GGHHHHHHHHHHHTTT
T ss_pred e-EEEEECCCCCeEEEEec-ccHHHHHHHHHHHhHh
Confidence 7 99999999999999995 7778899999999875
No 5
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=100.00 E-value=9.8e-38 Score=291.88 Aligned_cols=188 Identities=31% Similarity=0.522 Sum_probs=171.7
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||++++.++|++|||+|||++|||+|||||.|.+|. ++.+++++++.+..+|+++++++++.+.+.|.++||.+|+++
T Consensus 127 ~~~~l~~~el~~la~~~~g~~~~~~~GG~~~~~~g~--~~~~~~~~~l~~~~~~~~l~~vv~vp~~~~~~~ss~~~~~~~ 204 (332)
T 3qt5_A 127 LSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGH--DDLTSYAHGINSNGWEKDLSMIFVVINNQSKKVSSRSGMSLT 204 (332)
T ss_dssp HTCCCCHHHHHHHHHHHCGGGGGGGSCSEEEEECCS--STTTCEEEEECCTTGGGGEEEEEECCCCCCCC--CHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHhcCCchhhhcCCeEEEecCC--CCccceeeecccccCCCCcEEEEEEEcCCCCCCchHHHHHHh
Confidence 578999999999999999999999999999999875 568899999975556899999999999999999999999999
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
+++|++|+.|+.+ +++++..|+.||+++||+.|++++++|+++||+++++++|+++||+|.+.+|++.++++| +.|..
T Consensus 205 ~~~s~~~~~~v~~-~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~-~~Ga~ 282 (332)
T 3qt5_A 205 RDTSRFYQYWLDH-VDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCR-KANLP 282 (332)
T ss_dssp HHHCTTHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHH-HTTCC
T ss_pred hhcChhHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHH-hCCCc
Confidence 9999999999986 788999999999999999999999999999999999999999999999999999999996 57877
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
++||+||||||++||++ ++.+++.+.|++.|+
T Consensus 283 -~a~~SGaGPtv~~l~~~-~~a~~v~~~l~~~~~ 314 (332)
T 3qt5_A 283 -CYFTMDAGPNVKVLVEK-KNKQAVMEQFLKVFD 314 (332)
T ss_dssp -EEEECCSSSCEEEEEEH-HHHHHHHHHHHTTSC
T ss_pred -EEEEeCCCCcEEEEECH-HHHHHHHHHHHHhCC
Confidence 89999999999999995 567788888887664
No 6
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.95 E-value=3.1e-27 Score=216.56 Aligned_cols=178 Identities=25% Similarity=0.373 Sum_probs=157.5
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||++++.++|.+||++|+||+|+++||||+.|.. ++.+++.+++. ++++++++|++...|.++||..|++.
T Consensus 125 ~g~~ls~~el~~la~~~~G~~~~~~~GG~~~~~~----~~~~~~~~~~~-----~~~~~~v~i~~~~~~~~~tt~~~~~~ 195 (317)
T 2gs8_A 125 FDTQLDQKALAQKAKFASGSSSRSFFGPVAAWDK----DSGAIYKVETD-----LKMAMIMLVLNAAKKPISSREGMKLC 195 (317)
T ss_dssp HTCCCCHHHHHHHHHHHHGGGGGGGSCSEEEECT----TTCCEEECCCC-----CCEEEEEEECCCSSCCSCHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHhhcchhHhhhcCChheEee----CCCceeEEEcc-----ccccEEEEEEECCCcCcccHHHHHHH
Confidence 5789999999999999999999999999999975 45667787773 26778888889888999999999988
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
+.+++.++.|+.+ +..++..+..||+++|++.||+++++|.+.||+.++.+.|.+.|+.+.+.++++.++++| ..|..
T Consensus 196 ~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~-~~G~~ 273 (317)
T 2gs8_A 196 RDTSTTFDQWVEQ-SAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELR-QEGFA 273 (317)
T ss_dssp HHHCTTHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHH-HTTCC
T ss_pred hhcCHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHH-hcCCc
Confidence 8899999999876 688999999999999999999999999999999999999999999999999999999996 46866
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHh
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~ 191 (277)
++|+.+|||+++.++.+ ++.+++.+.+.+
T Consensus 274 -~~~~SGaGptv~~l~~~-~~~~~v~~~l~~ 302 (317)
T 2gs8_A 274 -CYFTMDAGPNVKVLCLE-KDLAQLAERLGK 302 (317)
T ss_dssp -EEEECCSSSCEEEEEEG-GGHHHHHHHHHT
T ss_pred -EEEEecCCCeEEEEEcH-HHHHHHHHHHhc
Confidence 89999999999999985 555566655554
No 7
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.13 E-value=3e-10 Score=101.87 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=112.8
Q ss_pred CCCCCChHHHHHHHHhhcc---------ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQGSG---------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSG---------SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++.++|.++|+++.+ -.+.++|||++.|..+ .+-..+++..+ +++++++ + ... .++
T Consensus 109 ~~~~l~~~~l~~la~~~e~~~~g~~~~ddv~~~~~gg~~~~~~~-----~~~~~~~~~~~---~~~~~vl-~-~p~-~~~ 177 (296)
T 1h72_C 109 FKLNLDKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNY-----EPLEVLHIPID---FKLDILI-A-IPN-ISI 177 (296)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHSSCCCTTHHHHHHCSEEEEEET-----TTTEEEEECCC---SCCCEEE-E-CCS-SCC
T ss_pred hCCCCCHHHHHHHHHHhcCcccCCCCccchHHHHhCCEEEEEeC-----CceEEEEEcCC---CCeEEEE-E-eCC-CCc
Confidence 5889999999999999888 6789999999999633 12224454322 2344433 3 333 356
Q ss_pred CchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHH
Q 023760 72 SSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVE 151 (277)
Q Consensus 72 sSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~ 151 (277)
++.+.++ .+....-+..++.+ ..++.++.+||+++|++.|+++.+.| .+|..+.. ++.|...++++..+
T Consensus 178 ~T~~~~~-~l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~~~~~~~~n--~~h~~~~~------~~~p~l~~~~~~~~ 246 (296)
T 1h72_C 178 NTKEARE-ILPKAVGLKDLVNN--VGKACGMVYALYNKDKSLFGRYMMSD--KVIEPVRG------KLIPNYFKIKEEVK 246 (296)
T ss_dssp CHHHHHH-TSCSCCCHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHTTC--CSSHHHHH------TTSTTHHHHHHHHT
T ss_pred cHHHHHH-hccCcCcHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhcC--cchhhhhh------ccCccHHHHHHHHH
Confidence 6666654 34444445677765 24678999999999999999998554 45655432 35566666666554
Q ss_pred HHHHHcCCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 152 RWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 152 ~~nr~~g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
+. + ..+....+||.++.++. ++..+++.+.+.+.++
T Consensus 247 ~~----a--~ga~~sGsG~~v~~l~~-~~~~~~~~~~l~~~~~ 282 (296)
T 1h72_C 247 DK----V--YGITISGSGPSIIAFPK-EEFIDEVENILRDYYE 282 (296)
T ss_dssp TT----E--EEEEECTTSSCEEEEEC-GGGHHHHHHHHHHHCS
T ss_pred hh----c--ceEEEecCChheEEEec-HHHHHHHHHHHHHhcc
Confidence 32 1 25789999999999995 5777788888887764
No 8
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.04 E-value=1.4e-08 Score=90.50 Aligned_cols=167 Identities=13% Similarity=0.037 Sum_probs=111.6
Q ss_pred CCCCCChHHHHHHHHhh----cccccc-----ccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQG----SGSACR-----SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G----SGSAcR-----Si~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++.++|.++|+.+ +|..|. ++|||++.|..|. ..+++.. .++. ++++++.. +++
T Consensus 107 ~~~~l~~~~l~~la~~~E~~~~~~p~g~d~~~~~~gg~~~~~~~~-------~~~~~~~--~~~~---~~~i~~~~-~~~ 173 (292)
T 2oi2_A 107 YQADLPHDVLEILVNRAEMIAHMNPSGLDAKTCLSDQPIRFIKNV-------GFTELEM--DLSA---YLVIADTG-VYG 173 (292)
T ss_dssp HTCCCCHHHHHHHHHHHHHHTTCCCCSHHHHHHTCSSCEEEETTT-------EEEECCC--CCSC---EEEEEECS-SCC
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCCchhHHHHhcCceEEEEcCC-------CceeecC--CCCC---EEEEEECC-CCC
Confidence 47889999999999874 788887 7899999996553 1345432 2332 35555554 667
Q ss_pred CchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHH
Q 023760 72 SSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVE 151 (277)
Q Consensus 72 sSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~ 151 (277)
++.+..+...+..+.++.++.. +.+...++.+||+++|++.|+++...+.+.||+. . ...+...++ ++
T Consensus 174 sT~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~-~-------~~~p~l~~l---~~ 241 (292)
T 2oi2_A 174 HTREAIQVVQNKGKDALPFLHA-LGELTQQAEIAISQKDAEGLGQILSQAHLHLKEI-G-------VSSLEADSL---VE 241 (292)
T ss_dssp CHHHHHHHHHHTGGGGHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-------CCCHHHHHH---HH
T ss_pred cHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-C-------CCcHHHHHH---HH
Confidence 6666654433333443444543 4555678899999999999999988777778863 2 223433333 33
Q ss_pred HHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhcCC
Q 023760 152 RWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 152 ~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
.++ +.|-. .+....||| .+..++.+++..+++.+.+.+.+.
T Consensus 242 ~~~-~~Ga~-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~l~~~~~ 284 (292)
T 2oi2_A 242 TAL-SHGAL-GAKMSGGGLGGCIIALVTNLTHAQELAERLEEKGA 284 (292)
T ss_dssp HHH-TTTCS-EEEEESSSSSSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred HHH-hCCCc-eeeeccCCCCcEEEEEecCchHHHHHHHHHHhcCc
Confidence 443 35765 788999999 888888853556678888877653
No 9
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=98.85 E-value=8.9e-08 Score=87.21 Aligned_cols=171 Identities=17% Similarity=0.200 Sum_probs=106.3
Q ss_pred CCCCCChHHHHHHHHhhcc---------ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQGSG---------SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSG---------SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++..+|.++|+.+.+ -.+.++|||++.|..|. +. ...+++.. ++++++++ +... .++
T Consensus 130 ~~~~l~~~~l~~~a~~~E~~~~G~~~G~D~~~~~~Gg~~~~~~~~---g~-~~~~~~~~---~~~~~~vl--~~~~-~~~ 199 (332)
T 2hfs_A 130 YQLNLTDEEVNLSAFVGEGGYHGTPSGADNTAATYGGLILYRRQN---GK-SVFKPIAF---QQRLYLVV--VGTG-INA 199 (332)
T ss_dssp HTCCCCHHHHHHHHHHHGGGSSSCCCSHHHHHHHHCEEEEEEECS---SS-EEEEEECC---CSCEEEEE--EECS-CCC
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCCcHhHHHHhcCCeEEEecCC---CC-cceeeecC---CCCcEEEE--EECC-CCc
Confidence 4778999999999987653 46688999999997663 21 23445532 24555443 3333 556
Q ss_pred CchHHHhhhh----hcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHH
Q 023760 72 SSTTGMRESV----ETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRII 147 (277)
Q Consensus 72 sSt~GM~~tv----~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii 147 (277)
++.+.++... .+.+.++.+.+. +.+...++.+||+++|++.|+++...+-+.++. +.- ..+.-.
T Consensus 200 ~T~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~-~~~-------~~p~l~--- 267 (332)
T 2hfs_A 200 STAKVVNDVHKMKQQQPVQFKRLYDN-YTHIVSQAREALQKGDLQRLGQLMNANHDLCRQ-IDV-------SCRELE--- 267 (332)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTC-------CCHHHH---
T ss_pred cHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-cCC-------CCHHHH---
Confidence 6666554321 123334444443 456778899999999999999987644333333 211 234333
Q ss_pred HHHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhcCCC
Q 023760 148 SYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 148 ~~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
+.++.++ +.|.. .+....||| .+..++.+++..+++.+.+.+.|..
T Consensus 268 ~l~~~~~-~~Ga~-ga~~sGaG~gg~v~~l~~~~~~a~~~~~~l~~~~~~ 315 (332)
T 2hfs_A 268 SIVQTCR-TYGAL-GAKLSGTGRGGIAVALAASSDQRDAIVKGLKAKCPE 315 (332)
T ss_dssp HHHHHHH-HTTCS-EEEEESSCSSSEEEEEESSHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHH-HcCCc-eEEeccCCCCcEEEEEecCcccHHHHHHHHHHHHhc
Confidence 4444443 35765 788999999 5777776433345788888877653
No 10
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=98.74 E-value=1.4e-07 Score=86.30 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=107.0
Q ss_pred CCCCCChHHHHHHHHhhc----cccccccCCCeeeeccCCC----CCCCCceeEecCCCCCCccceEEEEEEcCCCCCCC
Q 023760 1 MNLKENQSQLSAIARQGS----GSACRSLFGGFVKWILGKE----GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETS 72 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GS----GSAcRSi~GGfV~W~~G~~----~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vs 72 (277)
||++++..+|.++|+.+. |.+| +++|+++.+.-+.. .|..+...+++..+ ++++++++ .+..++.++
T Consensus 120 ~~~~l~~~el~~la~~~e~~~~g~~~-gi~d~~~~~~g~~~~~~~~d~~~~~~~~l~~~---~~~~~vl~-~~~~~~~~~ 194 (350)
T 2cz9_A 120 YNLKLDSLSKVLLAKKAENEFVGVPC-GILDQFAVVFGREGNVIFLDTHTLDYEYIPFP---KDVSILVF-YTGVRRELA 194 (350)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTCCCC-CSHHHHHHHHCCTTEEEEEETTTCCEEEEECC---TTEEEEEE-ECSCC----
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCc-cchhHHHHHhcCCCeEEEEecCCCcEEEEcCC---CCcEEEEE-ECCCCCccc
Confidence 578899999999998776 6777 78788877764320 01112344555322 35555444 344444455
Q ss_pred chH------HHhhhh-----------------hcCccHHHHHhhhhh--hhHHHHHHHHHcCCHHHHHHHHHHhHHHHHH
Q 023760 73 STT------GMRESV-----------------ETSLLLQHRAKEVVP--KRIVQMEEAIQNHDFSSFAQLTCADSNQFHA 127 (277)
Q Consensus 73 St~------GM~~tv-----------------~TSpl~~~r~~~~v~--~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA 127 (277)
+.. .|+.++ .-.+-+..+..+.+. .+..++.+|++++|++.|+++...+.+.||.
T Consensus 195 t~~~~~r~~~~~~a~~~~~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~ 274 (350)
T 2cz9_A 195 SSEYAERKHIAEESLKILGKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAK 274 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHTCSCGGGCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhChhhhhhCCHHHHhhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 432 111111 012212223333333 3588899999999999999999888888998
Q ss_pred HhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHhcC
Q 023760 128 VCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 128 ~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
.. ....|....+++.. + +.|.. .+....|| |.++.++++ +..+++.+.|.+.|
T Consensus 275 ~~-------~~~~p~l~~l~~~~---~-~~Ga~-ga~lsGaG~G~~v~~l~~~-~~~~~~~~~l~~~~ 329 (350)
T 2cz9_A 275 NY-------EVSCKELDFFVERA---L-KLGAY-GARLTGAGFGGSAIALVDK-EDAETIGEEILREY 329 (350)
T ss_dssp TT-------CCCCHHHHHHHHHH---H-HTTCS-EEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHH
T ss_pred Hh-------cCCCHHHHHHHHHH---H-HcCCC-EEEEecCCCceEEEEEEch-hhHHHHHHHHHHHH
Confidence 42 22344444444443 2 34765 78899999 999999995 55667888877655
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=98.73 E-value=8.6e-08 Score=86.45 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=104.7
Q ss_pred CCCCCChHHHHHHHHhh--------ccccccc-cCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQG--------SGSACRS-LFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G--------SGSAcRS-i~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++..+|.++|+++ ||+.+.. ++||++.|..|. ..+++..+ +...+++++.. .++
T Consensus 119 ~~~~l~~~~l~~la~~~E~~~~g~~sG~d~~~~~~g~~~~~~~g~-------~~~~~~~~-----~~~~~vi~~~~-~~~ 185 (308)
T 2x7i_A 119 LGKSLTKEELIEKANWAEQIAHGKPSGIDTQTIVSGKPVWFQKGH-------AETLKTLS-----LDGYMVVIDTG-VKG 185 (308)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHSSCCHHHHHHHHHTSCEEEETTE-------EEECSCCC-----BSSEEEEEECC-C--
T ss_pred hCCCCCHHHHHHHHHHHHHHHCCCCchHHHHHhhCCceEEEEcCC-------CceEeccC-----CCceEEEEECc-CCC
Confidence 47889999999999998 6877665 579999887552 24454321 23445566655 446
Q ss_pred CchHHHhhhh---hcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHH
Q 023760 72 SSTTGMRESV---ETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 148 (277)
Q Consensus 72 sSt~GM~~tv---~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~ 148 (277)
++.+..+... ..+|.... +.+ +.++..++.+||+++|++.|+++.. .+|..+.+. -+..|....+++
T Consensus 186 sT~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~al~~~d~~~l~~~~~----~~~~~~~~~----~~~~p~l~~l~~ 255 (308)
T 2x7i_A 186 STRQAVHDVHKLCEDPQYMSH-VKH-IGKLVLRASDVIEHHKFEALADIFN----ECHADLKAL----TVSHDKIEQLMK 255 (308)
T ss_dssp CCSCCCC--------CCHHHH-HHH-HHHHHHHHHHHHHTTCHHHHHHHHH----HHHHHHHHH----SCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCchHHH-HHH-HHHHHHHHHHHHHcCCHHHHHHHHH----HHHHHHHHh----CCCCHHHHHHHH
Confidence 6665543221 22332222 444 4557788899999999999999863 356665541 122344444444
Q ss_pred HHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhcCC
Q 023760 149 YVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 149 ~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
.. + +.|.. .+....||| .++.++++++..+++.+.+.+.+.
T Consensus 256 ~~---~-~~Ga~-ga~~sGaG~GG~v~~l~~~~~~~~~~~~~l~~~~~ 298 (308)
T 2x7i_A 256 IG---K-ENGAI-AGKLTGAGRGGSMLLLAKDLPTAKNIVKAVEKAGA 298 (308)
T ss_dssp HH---H-HTTCS-EEEESBTTTCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HH---H-HCCCc-EEEeeccCCCcEEEEEeCChhHHHHHHHHHHhCCC
Confidence 43 2 35765 788999999 899999853556678888877653
No 12
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=98.70 E-value=1.2e-07 Score=86.95 Aligned_cols=166 Identities=17% Similarity=0.199 Sum_probs=102.3
Q ss_pred CCCCCChHHHHHHHHhhccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHH
Q 023760 1 MNLKENQSQLSAIARQGSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGM 77 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM 77 (277)
||++++.++|.++|+.+.|| .+.++|||++. ..|. |.....+++. ||+++++++ +++ ..+++.+..
T Consensus 104 ~~~~l~~~el~~la~~~eg~~ddv~~~~~GG~~~-~~g~---ge~~~~~~~~----~p~~~~vlv-~p~--~~~sT~~a~ 172 (298)
T 3hul_A 104 AELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVV-GAKL---DGEDFYVRHL----FPDCALIAF-IPK--AELLTSESR 172 (298)
T ss_dssp TTCCCCHHHHHHHHHHHHSCSTTHHHHHHCSEEE-EEEE---TTEEEEEEEC----CC-CEEEEE-ECC--CCCC-----
T ss_pred hCCCCCHHHHHHHHHHhcCCcccCcccccCCEEE-EEeC---CCcEEEEEcC----CCCeEEEEE-ECC--CCCCcHHHH
Confidence 68899999999999999984 78899999976 3332 2222334542 455554444 343 346555554
Q ss_pred hhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc
Q 023760 78 RESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 157 (277)
Q Consensus 78 ~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~ 157 (277)
+ ......-++.++.+ ..+...+..|+.++|++.|++....| .+|...... +.|...++++ .+ ++.
T Consensus 173 ~-~l~~~~~~~~~~~~--~~~~~~~~~al~~~d~~~l~~~l~nd--~~~e~~~~~------~~p~l~~l~~---~~-~~~ 237 (298)
T 3hul_A 173 G-VLPDTLPFKEAVQA--SSIANVMIAAILRNDMTLAGEMMERD--LWHEKYRSQ------LVPHLAQIRD---VA-KNQ 237 (298)
T ss_dssp ----CCEEEHHHHHHH--HHHHHHHHHHHTTTCHHHHHHHHTCC--CC-----CT------TGGGHHHHHH---HH-HTT
T ss_pred H-HHhhhccHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHhhh--HHHHHHHHh------hCchHHHHHH---HH-HHC
Confidence 3 23333234555553 24678899999999999999987655 244433222 2344333333 34 345
Q ss_pred CCCeEEEEeccCCCeEEeeecccCHHHHHHHHHhcCC
Q 023760 158 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFP 194 (277)
Q Consensus 158 g~~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~f~ 194 (277)
|-. .+....+||.++.++. ++..+++.+.|++.++
T Consensus 238 Ga~-ga~~SGsGptv~al~~-~~~a~~v~~~l~~~~~ 272 (298)
T 3hul_A 238 GAY-AACLSGAGPTVLVFAP-RNLANKLQTSLQTLEI 272 (298)
T ss_dssp TCC-EEEECTTSSCEEEEEC-GGGHHHHHHHHHTTCC
T ss_pred CCE-EEEEeccchheEEEEC-HHHHHHHHHHHHhcCC
Confidence 765 7889999999999998 5777788888887653
No 13
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=98.57 E-value=2.4e-06 Score=80.43 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=100.5
Q ss_pred CCCCCChHHHHHHHHhh----ccccc------cccCCCe--eeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCC
Q 023760 1 MNLKENQSQLSAIARQG----SGSAC------RSLFGGF--VKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQ 68 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G----SGSAc------RSi~GGf--V~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~ 68 (277)
||++++..+|.++|+++ .|+.| -|+|||+ +.|..+. +...+++..+ +++++++++. +..+
T Consensus 164 ~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~-----~~~~~~~~~~--~~~~~~vl~~-~~~~ 235 (399)
T 1wuu_A 164 CPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALLIDCR-----SLETSLVPLS--DPKLAVLITN-SNVR 235 (399)
T ss_dssp SCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEEEETT-----TCCEEEEECC--CSSEEEEEEE-EEEE
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEEEecC-----CCceEEecCC--CCCeEEEEEE-CCCc
Confidence 57889999999999986 44444 3899996 4444332 1223555311 2355555443 2222
Q ss_pred CCCCc------hHHHhhhhh---------------------cCccHHHHHhhhhhh--hHHHHHHHHHcCCHHHHHHHHH
Q 023760 69 KETSS------TTGMRESVE---------------------TSLLLQHRAKEVVPK--RIVQMEEAIQNHDFSSFAQLTC 119 (277)
Q Consensus 69 K~vsS------t~GM~~tv~---------------------TSpl~~~r~~~~v~~--~~~~m~~AI~~~Df~~fgei~e 119 (277)
..+.. +..|+...+ -.+....|+.+++.+ +..++.+|++++|++.|+++..
T Consensus 236 ~~t~~~~y~~r~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~ 315 (399)
T 1wuu_A 236 HSLASSEYPVRRRQCEEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMV 315 (399)
T ss_dssp C--CTTTHHHHHHHHHHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 22211 222322111 012222334443333 4788999999999999999987
Q ss_pred HhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHH-cCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHhcC
Q 023760 120 ADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS-VGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 120 ~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~-~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
.+-+.|+..+.-+ .+.--.+++ .. ++ .|.. .+....|| |.+..++.+ +..+++.+.+.+.|
T Consensus 316 ~~h~~l~~~~~~~-------~p~l~~l~~---~a-~~~~Ga~-ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~l~~~~ 379 (399)
T 1wuu_A 316 ESHRSLRDDYEVS-------CPELDQLVE---AA-LAVPGVY-GSRMTGGGFGGCTVTLLEA-SAAPHAMRHIQEHY 379 (399)
T ss_dssp HHHHHHHHTSCCC-------CHHHHHHHH---HH-HTSTTEE-EEEECSSCSEEEEEEEEEG-GGHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC-------CHHHHHHHH---HH-HhcCCce-EEeeecCCCccEEEEEEcc-chHHHHHHHHHHHh
Confidence 6655666543222 333333333 33 33 3654 67889999 999999985 66678888888766
No 14
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=98.52 E-value=2.6e-06 Score=80.77 Aligned_cols=172 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred CCCCCChHHHHHHHHhh----cccc------ccccCCC--eeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCC
Q 023760 1 MNLKENQSQLSAIARQG----SGSA------CRSLFGG--FVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQ 68 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G----SGSA------cRSi~GG--fV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~ 68 (277)
||++++..+|.++|+.+ .|+. +.++||| .+.|..+.. ...+++..+ +++++++++ .+..+
T Consensus 174 ~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d~~~-----~~~~~l~~~--~~~~~~vl~-~~~~~ 245 (419)
T 1pie_A 174 FNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELDCNT-----LKYEMVPVE--LRDYDIVIM-NTNKP 245 (419)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEETTT-----CCEEEEECC--CTTEEEEEE-ECCCC
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEeecCC-----CceEEeecC--CCCcEEEEE-ECCCc
Confidence 57889999999999985 3333 4799999 566765431 123555322 245554433 33332
Q ss_pred CCCCc------hHHHhhhh---h----------cCc-------------cHHHHHhhhhhh--hHHHHHHHHHcCCHHHH
Q 023760 69 KETSS------TTGMRESV---E----------TSL-------------LLQHRAKEVVPK--RIVQMEEAIQNHDFSSF 114 (277)
Q Consensus 69 K~vsS------t~GM~~tv---~----------TSp-------------l~~~r~~~~v~~--~~~~m~~AI~~~Df~~f 114 (277)
..++. +..|+..+ . .+| ....|+.+++.+ +..++.+||+++|++.|
T Consensus 246 ~~t~~~~y~~r~~~~~~a~~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~l 325 (419)
T 1pie_A 246 RALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKF 325 (419)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 32221 11122111 1 111 123344443332 58889999999999999
Q ss_pred HHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc-CCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHh
Q 023760 115 AQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 115 gei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~-g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~ 191 (277)
+++...+-+.+|....- ..+.--.+ ++..+ +. |.. .+....|| |.+..|+.+ +..+++.+.|.+
T Consensus 326 g~lm~~~~~~l~~~~~~-------~~p~l~~l---~~~a~-~~~Ga~-ga~lsGaG~Gg~v~al~~~-~~a~~~~~~l~~ 392 (419)
T 1pie_A 326 GELLNASHASLKDDYEV-------TGLELDTL---AETAQ-KQAGVL-GARMTGAGFGGCAIALVAH-DNVSAFRKAVGQ 392 (419)
T ss_dssp HHHHHHHHHHHHHTSCC-------CCHHHHHH---HHHHH-HSTTEE-EEEECSSCSSSEEEEEEEG-GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCC-------CCHHHHHH---HHHHH-hcCCCc-eeeEecCCCCeEEEEEEch-hhHHHHHHHHHH
Confidence 99988777777764211 23333333 33343 33 654 67889998 999999985 666778888876
Q ss_pred cC
Q 023760 192 FF 193 (277)
Q Consensus 192 ~f 193 (277)
.|
T Consensus 393 ~~ 394 (419)
T 1pie_A 393 VY 394 (419)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 15
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=98.40 E-value=4.4e-07 Score=81.16 Aligned_cols=144 Identities=11% Similarity=0.013 Sum_probs=92.8
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCc-cceEEEEEEcCCCCCCCchHHHhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN-DLVIIIAVVSSRQKETSSTTGMRE 79 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~-~l~~ii~vvs~~~K~vsSt~GM~~ 79 (277)
||++++.++|.+||+.+++..+.++|||++.+. |. |. ..+++. +| +++++++ .+. .++++.+..+
T Consensus 114 ~~~~l~~~el~~la~~~e~dv~~~~~gg~~~~~-g~---g~--~~~~l~----~~~~~~~vl~-~p~--~~~sT~~~~~- 179 (271)
T 2v8p_A 114 LGSPLSEEELRELVGSISADAPFFLLGKSAIGR-GK---GE--VLEPVE----TEISGKITLV-IPQ--VSSSTGRVYS- 179 (271)
T ss_dssp TTCCSCHHHHHHHHHHHCTTTGGGGTCSEEEEE-TT---TT--EEEECC----CCCCSEEEEE-ECS--SCCCHHHHHH-
T ss_pred cCCCcCHHHHHHHHHHhCCCHHHHhcCCeEEEE-Ec---CC--EEEEcc----CCCCcEEEEE-eCC--CCCCHHHHHH-
Confidence 578999999999999999999999999998765 32 11 244553 34 5555554 332 4565554443
Q ss_pred hhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCC
Q 023760 80 SVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 159 (277)
Q Consensus 80 tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~ 159 (277)
.+...+ ..++..+ +||+++|++.|+++. + |.||...... .|...++++ .++ +.|.
T Consensus 180 ~~~~~~----------~~~~~~~-~al~~~d~~~~~~~~-~--n~l~~~~~~~-------~p~l~~~~~---~~~-~~Ga 234 (271)
T 2v8p_A 180 SLREEH----------FVTPEYA-EEKIQRIISGEVEEI-E--NVLGDIAREL-------YPEINEVYR---FVE-YLGF 234 (271)
T ss_dssp TCCTTS----------CCCHHHH-HHHHHHHHTTCGGGC-C--BHHHHHHHHH-------CHHHHHHHH---HHH-HTTC
T ss_pred hccccc----------CcchhHH-HHhhcCCHHHHHHHH-h--CChhhHhHHh-------ChHHHHHHH---HHH-hCCC
Confidence 222211 1345567 999999999998874 2 5688874432 344344444 333 3454
Q ss_pred CeEEE-EeccCCCeEEeeecccCHHHHH
Q 023760 160 PQVAY-TFDAGPNAVLIARNRKIATELL 186 (277)
Q Consensus 160 ~~v~y-T~DAGPNv~i~~~~~~~~~~~~ 186 (277)
+. ...+||.++.++.+++..+++.
T Consensus 235 ---a~~mSGsG~~v~~l~~~~~~a~~~~ 259 (271)
T 2v8p_A 235 ---KPFVSGSGSTVYFFGGASEELKKAA 259 (271)
T ss_dssp ---CCEECTTSSCEEESSCCCHHHHHHH
T ss_pred ---ccCccccCcCeEEEeCCHHHHHHHH
Confidence 66 7899999999998544444444
No 16
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=98.18 E-value=2.2e-05 Score=70.87 Aligned_cols=159 Identities=15% Similarity=0.152 Sum_probs=96.5
Q ss_pred CCCCCChHHHHHHHHhh--------cc-ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCcc-ce---EEEEEEcCC
Q 023760 1 MNLKENQSQLSAIARQG--------SG-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWND-LV---IIIAVVSSR 67 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G--------SG-SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~-l~---~ii~vvs~~ 67 (277)
+|++++.++|.++|+.. || -.+.++|||++.+ .+. . .+++. ..||+ +. .++++.+.
T Consensus 132 ~~~~l~~~~l~~~a~~~E~~~~g~~sg~D~~~~~~Gg~~~~-~~~-----~--~~~~~--~~~~~~l~~~~~~vl~~~~- 200 (317)
T 1kkh_A 132 YNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKGILEI-KNN-----K--FRKIK--GEFEEFLKNCKFLIVYAEK- 200 (317)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHSSSCCSHHHHHHHHCSEEEE-SSS-----C--EEEEC--HHHHHHHHTCCEEEEEEEC-
T ss_pred hCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHhCCeEEE-cCC-----C--ceEec--CCcccccccCcEEEEEECC-
Confidence 57889999999999876 24 6789999999988 332 1 34442 12432 21 34444343
Q ss_pred CCCCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHH
Q 023760 68 QKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRII 147 (277)
Q Consensus 68 ~K~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii 147 (277)
.+++ |..+...+....-...++++ .-..+.+|++.+|++.|+++... .|..+.. . -+..+...+++
T Consensus 201 -~~~~-T~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~d~~~l~~~~~~----~~~~~~~-~---~~~~p~l~~~~ 266 (317)
T 1kkh_A 201 -RKKK-TAELVNEVAKIENKDEIFKE----IDKVIDEALKIKNKEDFGKLMTK----NHELLKK-L---NISTPKLDRIV 266 (317)
T ss_dssp -CCSC-HHHHHHHHHTCTTHHHHHHH----HHHHHHHHHHCCSHHHHHHHHHH----HHHHHHT-T---TCCCHHHHHHH
T ss_pred -CcCc-HHHHHHHHHHhhccHHHHHH----HHHHHHHHHHcCCHHHHHHHHHH----HHHHHHh-c---CCCCHHHHHHH
Confidence 3344 44454444332111333322 22336789999999999998743 2444332 1 23455555555
Q ss_pred HHHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHh
Q 023760 148 SYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 148 ~~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~ 191 (277)
+..+ +.| . .+....||| .++.++.+ +..+++.+.+.+
T Consensus 267 ~~~~----~~G-~-ga~~sGaG~GG~v~~l~~~-~~~~~~~~~l~~ 305 (317)
T 1kkh_A 267 DIGN----RFG-F-GAKLTGAGGGGCVIILVNE-EKEKELLKELNK 305 (317)
T ss_dssp HHHH----HHS-S-EEEECSSSSSEEEEEECCG-GGHHHHHHHHHT
T ss_pred HHHH----hcC-c-eeEEeecCCCCEEEEEech-hhHHHHHHHHHh
Confidence 5443 347 5 789999999 88888885 446677777765
No 17
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=97.70 E-value=0.0008 Score=62.97 Aligned_cols=157 Identities=11% Similarity=0.161 Sum_probs=86.9
Q ss_pred hHHHHHHHHh---------hccc---cccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCch
Q 023760 7 QSQLSAIARQ---------GSGS---ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSST 74 (277)
Q Consensus 7 ~~~lS~lAR~---------GSGS---AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt 74 (277)
..++..|+++ |.+| .+.++|||++.|..| ..+++.. .+++++++ ++.. .+.++.
T Consensus 179 ~~~l~~l~~~A~~~E~~~~G~~sG~D~~~~~~Gg~~~~~~~--------~~~~l~~---~~~~~~vl--~~~~-~~~~T~ 244 (395)
T 1kvk_A 179 EEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQG--------KMSSLKR---LPALQILL--TNTK-VPRSTK 244 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEESSS--------CEEECSC---CCCEEEEE--EECC-CCCCHH
T ss_pred hhhHHHHHHHHHHhhheEecCCCCcchHHhhhcceEEEcCC--------CceeccC---CCCcEEEE--EECC-CCCchH
Confidence 7788888776 6664 456999999998543 2356632 24555333 3343 334443
Q ss_pred HHHhhh---h-hcCccHHHHHhhhhhhhHHHHHHHHH-------cCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhH
Q 023760 75 TGMRES---V-ETSLLLQHRAKEVVPKRIVQMEEAIQ-------NHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTS 143 (277)
Q Consensus 75 ~GM~~t---v-~TSpl~~~r~~~~v~~~~~~m~~AI~-------~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S 143 (277)
+..+.. . ...+.++.+.++ +..-..++.+++. ++|++.|+++...+-+.||.. .- ..+.-
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm~~~~~~l~~~-~~-------~~p~l 315 (395)
T 1kvk_A 245 ALVAGVRSRLIKFPEIMAPLLTS-IDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL-GV-------GHASL 315 (395)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHH-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH-TC-------CCHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHc-CC-------CCHHH
Confidence 322111 1 111222222222 2222344455554 489999999998887888862 11 23433
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHhcC
Q 023760 144 HRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLFFF 193 (277)
Q Consensus 144 ~~ii~~V~~~nr~~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~~f 193 (277)
-.+++.. ++.|. .+...-|| |.+..++.+ +..+++++.+.+.|
T Consensus 316 ~~l~~~a----~~~Ga--ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~~~~~~ 360 (395)
T 1kvk_A 316 DQLCQVT----AAHGL--HSKLTGAGGGGCGITLLKP-GLERAKVEAAKQAL 360 (395)
T ss_dssp HHHHHHH----HHTTC--EEEECSSCSSSEEEEEECT-TCCHHHHHHHHHHH
T ss_pred HHHHHHH----HHcCC--ceeeccCCCCCEEEEEecC-CCCHHHHHHHHHHH
Confidence 4444433 23464 57788998 888888884 43345565555443
No 18
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=97.41 E-value=0.0012 Score=61.86 Aligned_cols=174 Identities=11% Similarity=0.116 Sum_probs=100.3
Q ss_pred CCCCCChHHHHHHHHh------hccc---cccccCCCeeeeccCCCC-----CCC------------CceeEecCCCCCC
Q 023760 1 MNLKENQSQLSAIARQ------GSGS---ACRSLFGGFVKWILGKEG-----NGS------------DSLAVQLVDEEHW 54 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~------GSGS---AcRSi~GGfV~W~~G~~~-----dg~------------dS~A~~v~~~~hw 54 (277)
||++++..+|.++|.. |.|| .+=|+|||++.+...... .+. +-..+++..+
T Consensus 135 ~~~~l~~~~l~~~a~~~E~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~--- 211 (365)
T 3k17_A 135 FYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEP--- 211 (365)
T ss_dssp HCTTSCHHHHHHHHHHHHHHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCC---
T ss_pred hCCCCCHHHHHHHHHHHHHHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCC---
Confidence 5788999999999964 3333 456899999998754210 000 1123344221
Q ss_pred ccceEEEEEEcCCCCCCCchHHHhhhhhc-----CccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHh
Q 023760 55 NDLVIIIAVVSSRQKETSSTTGMRESVET-----SLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVC 129 (277)
Q Consensus 55 ~~l~~ii~vvs~~~K~vsSt~GM~~tv~T-----Spl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~ 129 (277)
++ + +++++.+ ++.++.+.. ..+.. ...+++.+.+ ..++..++.+||+++|++.|+++...+-+.|+..-
T Consensus 212 ~~-~--lll~~t~-~~~sT~~~~-~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~ 285 (365)
T 3k17_A 212 VP-T--FSVGWTG-TPVSTGKLV-SQIHAFKQEDSKNYQHFLTR-NNEIMKQIIQAFHTKDEELLYSSIKENRRILQELG 285 (365)
T ss_dssp SS-E--EEEEECS-CCCCHHHHH-HHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-c--EEEEECC-CccchHHHH-HHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 22 3 3333444 444444444 33321 1223444443 34567899999999999999999887777777643
Q ss_pred ccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHh
Q 023760 130 LDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 130 l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~ 191 (277)
.. +..-+.++.--.+++..+ +.|- ++--.=|| +-+..|+.+++..+++.+.+++
T Consensus 286 v~--~~~~is~p~ld~l~~~a~----~~Ga--~ak~sGAGgGg~vial~~~~~~~~~l~~~l~~ 341 (365)
T 3k17_A 286 TK--AGVNIETSLLKELADSAE----NMGG--AGKSSGSGGGDCGIAFSKTKELAEKLVNEWEK 341 (365)
T ss_dssp HH--HTCCCSCHHHHHHHHHHH----HTTS--EEEECTTCSSSEEEEEESSHHHHHHHHHHHHH
T ss_pred hh--cCCcccCHHHHHHHHHHH----hcCC--EEEecCCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 21 122233444444444443 2343 35567787 7888888754445566666665
No 19
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=97.41 E-value=0.0051 Score=56.33 Aligned_cols=160 Identities=15% Similarity=0.100 Sum_probs=91.5
Q ss_pred CCCCCChHHHHHHHHhhc--------c-ccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCC
Q 023760 1 MNLKENQSQLSAIARQGS--------G-SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKET 71 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GS--------G-SAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~v 71 (277)
||++++..+|.++|..+. | =..=++|||++.. + ++. ++. +|++++++ +... .++
T Consensus 130 ~~~~l~~~~l~~la~~~e~~~~g~~~~~D~~~~~~Gg~~~~--~---~~~-----~l~----~p~~~~vl--v~p~-~~~ 192 (321)
T 4hac_A 130 FGFGLSLQEIAKLGHEIEIKVQGAASPTDTYVSTFGGVVTI--P---ERR-----KLK----TPDCGIVI--GDTG-VFS 192 (321)
T ss_dssp HTCCCCHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCSEEEE--T---TCC-----EEC----CCCCEEEE--EECC-CCC
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCCcHHHHHHHHcCCeEEE--c---CCc-----eec----cCCCEEEE--EECC-CCc
Confidence 477899999999998754 2 2345789999887 3 221 221 23444433 3333 344
Q ss_pred CchHHHhh---hhhcCcc-HHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHH
Q 023760 72 SSTTGMRE---SVETSLL-LQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRII 147 (277)
Q Consensus 72 sSt~GM~~---tv~TSpl-~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii 147 (277)
++.+..+. ..+..|- ++..+.+ +.+...++.+|++++|++.|+++...+-..+ .. +-..+|.-.+++
T Consensus 193 sT~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~-----~~---~~v~~p~l~~l~ 263 (321)
T 4hac_A 193 STKELVANVRQLRESYPDLIEPLMTS-IGKISRIGEQLVLSGDYASIGRLMNVNQGLL-----DA---LGVNILELSQLI 263 (321)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HH---HTCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-----hh---cCCCCHHHHHHH
Confidence 44443322 1112221 2222322 2334566889999999999999875322211 11 112345444444
Q ss_pred HHHHHHHHHcCCCeEEEEeccCC--CeEEeeecccCHHHHHHHHHhc
Q 023760 148 SYVERWNRSVGSPQVAYTFDAGP--NAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 148 ~~V~~~nr~~g~~~v~yT~DAGP--Nv~i~~~~~~~~~~~~~~l~~~ 192 (277)
+.. ++.|-. .+.-.=||| .+..++. ++..+++.+.|++.
T Consensus 264 ~~a----~~~Ga~-ga~~SGaG~GG~v~al~~-~~~a~~~~~~l~~~ 304 (321)
T 4hac_A 264 YSA----RAAGAF-GAKITGAGGGGCMVALTA-PEKCNQVAEAVAGA 304 (321)
T ss_dssp HHH----HHTTCS-EEEECSSCSSSEEEEEEC-STTHHHHHHHHHHT
T ss_pred HHH----HHCCCC-EEEECccCCCCEEEEEcC-HHHHHHHHHHHHhC
Confidence 443 345655 677889999 6777774 56677788887764
No 20
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=97.33 E-value=0.0031 Score=58.20 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=95.9
Q ss_pred CCCCCChHHHHHHHHhh------ccc---cccccCCCeeeeccCCCCC----------------CCCceeEecCCCCCCc
Q 023760 1 MNLKENQSQLSAIARQG------SGS---ACRSLFGGFVKWILGKEGN----------------GSDSLAVQLVDEEHWN 55 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~G------SGS---AcRSi~GGfV~W~~G~~~d----------------g~dS~A~~v~~~~hw~ 55 (277)
||++++..+|-++|... .|| .+=|+|||++.+....... ..+-..+++..+ +
T Consensus 124 ~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~---~ 200 (337)
T 2pg9_A 124 YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---L 200 (337)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---S
T ss_pred hCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCC---C
Confidence 67899999999999864 222 4568999998876321000 001123445322 2
Q ss_pred cceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCC
Q 023760 56 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP 135 (277)
Q Consensus 56 ~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Pp 135 (277)
+++++++. .. ++.++.+.. ..+... +.+..+.+ +.++..++.+||+++|++.|+++...+-..++..- +.
T Consensus 201 ~~~lvl~~--~~-~~~~T~~~~-~~~~~~-~~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~----~~ 270 (337)
T 2pg9_A 201 ECDFLVGW--TK-EVAVSSHMV-QQIKQN-INQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLS----TD 270 (337)
T ss_dssp CCEEEEEE--CC-CCCCHHHHH-HHHGGG-CCHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC----TT
T ss_pred CceEEEEE--CC-CccchHHHH-HHHHHH-HHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----Cc
Confidence 44444433 33 344444443 333321 12344443 45677889999999999999998876555566541 11
Q ss_pred eEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHh
Q 023760 136 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 136 i~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~ 191 (277)
+ .++.-..+++.. ++.|- .+.-.=|| |.+..++.+++..+++.+.+++
T Consensus 271 v--~~p~l~~l~~~a----~~~Ga--~ak~sGaGgGg~vial~~~~~~~~~~~~~l~~ 320 (337)
T 2pg9_A 271 I--YTPLLRQLKEAS----QDLQA--VAKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 320 (337)
T ss_dssp T--CCHHHHHHHHTT----TTSSE--EEEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred C--CCHHHHHHHHHH----HHCCC--EEEEeCCCCccEEEEEECCHHHHHHHHHHHHH
Confidence 1 223333333332 23343 25566788 8788888754445566666654
No 21
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=97.29 E-value=0.00021 Score=63.64 Aligned_cols=147 Identities=13% Similarity=0.043 Sum_probs=85.8
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||+++ +|.++|+..++..+.++|||++.+. |. +. ..+++. .++++++++. + ...+++.+.++..
T Consensus 109 ~~~~l---~l~~la~~~g~dv~~~~~Gg~~~~~-g~---g~--~~~~l~----~~~~~~vl~~-p--~~~~sT~~~~~~~ 172 (275)
T 1uek_A 109 YPAEV---DLFALARTLGADVPFFLLGRGAEAR-GV---GE--RLKPLA----LPPVPAVVFF-P--GLRVPTPLVYRAV 172 (275)
T ss_dssp SCSCC---CHHHHHHHHCTTHHHHHHCSEEEEE-TT---TT--EEEEEC----CCCEEEEEEE-C--CCCCCHHHHHHTC
T ss_pred cCCCh---HHHHHHHHhCCChHHHhcCCeEEEE-cc---Cc--eeEEcc----CCCcEEEEEe-C--CCCCchHHHHHhC
Confidence 45666 8999999988999999999998774 32 11 345553 3455555443 3 2567666555432
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
... .+. ...++..+.+||+++ ++. + +| |.|+.... .+.|...++++.. ++.|-.
T Consensus 173 ~~~------~~~--~~~~~~~~~~al~~~-~~~--~-~~---n~l~~~~~-------~~~p~l~~l~~~~----~~~Ga~ 226 (275)
T 1uek_A 173 RPE------DFG--PDLPVEAILEALARG-EEP--P-YW---NSLEGPAF-------RLFPELKEVRGRM----RALGLR 226 (275)
T ss_dssp CGG------GCC--CCCCHHHHHHHHHHT-CCC--S-CC---BTTHHHHH-------HHCTHHHHHHHHH----HHTTCE
T ss_pred chh------hcc--cCCChHHHHHHHHhc-ccc--c-cc---cchHHHHH-------HhChHHHHHHHHH----HhCCCC
Confidence 111 000 123467788888887 543 1 22 22333322 2335544444443 234654
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHH
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLL 190 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~ 190 (277)
.+....+||.++.++.+++..+++.+.+.
T Consensus 227 -ga~~SGsG~~v~~l~~~~~~~~~~~~~l~ 255 (275)
T 1uek_A 227 -GVLMSGSGSAFFGLAEGPDHARRAAEALR 255 (275)
T ss_dssp -EEEECTTSSCEEEECSSHHHHHHHHHHHT
T ss_pred -EEEEeccccCeEEEeCCHHHHHHHHHHhh
Confidence 68899999999999985334445555544
No 22
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=97.05 E-value=0.0003 Score=63.60 Aligned_cols=140 Identities=9% Similarity=0.058 Sum_probs=78.6
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
+|++++.++|.++|+...+-.+.++|||++ |..|.. . ..+++. .|++.+++ + .. ..++++.+..+.
T Consensus 122 ~~~~l~~~~l~~la~~~e~dv~~~~~gg~~-~~~g~g---~--~~~~l~----~~~~~~vl-~-~p-~~~~sT~~~~~~- 187 (283)
T 2ww4_A 122 WQCGLSMDELAEMGLTLGADVPVFVRGHAA-FAEGVG---E--ILTPVD----PPEKWYLV-A-HP-GVSIPTPVIFKD- 187 (283)
T ss_dssp TTCCCCHHHHHHHHHTTCTTHHHHHHTBCE-EEETTT---T--EEEECC----CCCCEEEE-E-CC-SCCCCHHHHHTC-
T ss_pred cCCCcCHHHHHHHHHHhCCCHHHhhcCCeE-EEEecC---c--cceEcC----CCCcEEEE-E-eC-CCCCchHHHHhc-
Confidence 578999999999999999999999999997 444431 1 245662 24445333 2 22 346766555432
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
.. +. + +. ....+. ++.++|+ + |.++ |....+.|...++++.. ++.|
T Consensus 188 ~~----~~-~-~~-~~~~l~----~l~~~~~-------~---nd~~-------~~~~~~~p~l~~i~~~~----~~~G-- 233 (283)
T 2ww4_A 188 PE----LP-R-NT-PKRSIE----TLLKCEF-------S---NDCE-------VIARKRFREVDAVLSWL----LEYA-- 233 (283)
T ss_dssp TT----SC-C-CC-CCCCHH----HHHTSCC-------C---BTTH-------HHHHHHCHHHHHHHHHH----HTTS--
T ss_pred cc----cc-c-cc-hHHHHH----HHHhhhh-------c---CchH-------HHHHhcChHHHHHHHHH----HHcC--
Confidence 22 11 0 11 111222 3444442 1 1111 22233455555555543 2356
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHH
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRL 189 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l 189 (277)
.++...+||.++.++.+++..+++.+.+
T Consensus 234 -~a~~SGsG~tvf~l~~~~~~a~~~~~~l 261 (283)
T 2ww4_A 234 -PSRLTGTGACVFAEFDTESEARQVLEQA 261 (283)
T ss_dssp -CEEECTTSSCEEEEESSHHHHHHHHHHC
T ss_pred -CceECCcccceEEEeCCHHHHHHHHHHh
Confidence 3789999999999998533344444443
No 23
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=96.90 E-value=0.0022 Score=58.77 Aligned_cols=161 Identities=14% Similarity=0.143 Sum_probs=93.7
Q ss_pred CCCCCChHHHHHHHHhhccccccccCCCeeeeccCCCCCCCCceeEecCCCCCCccceEEEEEEcCCCCCCCchHHHhhh
Q 023760 1 MNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRES 80 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GSGSAcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~~l~~ii~vvs~~~K~vsSt~GM~~t 80 (277)
||++++.++|.+||+...+=..=++|||++ |..|. |. .-.++... +++++ +++.+. ..+|+.+.-+.
T Consensus 121 ~~~~l~~~~l~~la~~~~~Dv~~~~~Gg~~-~~~g~---ge--~~~~l~~~---~~~~~-vl~~P~--~~vsT~~a~~~- 187 (306)
T 3pyf_A 121 WELNVPRRDLRMLAARLGSDVPFALHGGTA-LGTGR---GE--ELATVLSR---NTFHW-VLAFAD--SGLLTSAVYNE- 187 (306)
T ss_dssp TTCCCCHHHHHHHHHHHCTTHHHHHHBSEE-EECSS---SS--CCEEECCS---SCEEE-EEEECS--SCCCHHHHHHH-
T ss_pred hCCCcCHHHHHHHHHHhCCCCceeecCceE-EEEee---CC--eEEEccCC---CCcEE-EEEECC--CCCcHHHHHHh-
Confidence 688999999999999877777789999985 34342 11 23455322 23333 344443 34554433221
Q ss_pred hhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCC
Q 023760 81 VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 81 v~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~ 160 (277)
... .....+-....+...+..|+.++|++.|++... |. ++... +.+.|.-.++++.. ++.|-.
T Consensus 188 l~~---~~~~~~~~~~~~~~~~~~al~~~d~~~l~~~l~-n~--le~~~-------~~~~P~l~~i~~~~----~~~Ga~ 250 (306)
T 3pyf_A 188 LDR---LREVGDPPRLGEPGPVLAALAAGDPDQLAPLLG-NE--MQAAA-------VSLDPALARALRAG----VEAGAL 250 (306)
T ss_dssp HHH---HHHHSCCCCCCCHHHHHHHHHHTCHHHHGGGCE-ET--THHHH-------HHHCTHHHHHHHHH----HHTTCS
T ss_pred hhh---hccccccccccCHHHHHHHHHhCCHHHHHHHhc-cc--hHHHH-------HHhChHHHHHHHHH----HhcCCC
Confidence 110 000000001125788999999999999998543 22 23222 12334444444444 345654
Q ss_pred eEEEEeccCCCeEEeeecccCHHHHHHHHHhc
Q 023760 161 QVAYTFDAGPNAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 161 ~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~ 192 (277)
.+.--=+||-++.++.+++..+++.+.|.+.
T Consensus 251 -ga~mSGsGptvfal~~~~~~a~~~~~~l~~~ 281 (306)
T 3pyf_A 251 -AGIVSGSGPTCAFLCTSASSAIDVGAQLSGA 281 (306)
T ss_dssp -EEEECTTSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred -EEEEcCcchhheEEeCCHHHHHHHHHHHHhc
Confidence 5667789999999998645566677777664
No 24
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=96.07 E-value=0.0067 Score=56.51 Aligned_cols=172 Identities=14% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCCCCChHHHHHHHHhhc--------cc--cccccCCCeeeeccCCCCCCCCceeEecCCCCCCc--cceEEEEEEcCCC
Q 023760 1 MNLKENQSQLSAIARQGS--------GS--ACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN--DLVIIIAVVSSRQ 68 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~GS--------GS--AcRSi~GGfV~W~~G~~~dg~dS~A~~v~~~~hw~--~l~~ii~vvs~~~ 68 (277)
||++++..+|.++|...- |- -.=++|||++...-- |+..-..+++..+ .|. ++...++|+...
T Consensus 131 ~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~---~~~~~~~~~l~~~-~~~~~~l~~~lvi~~t~- 205 (357)
T 3k85_A 131 LSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL---QNDLVIVNPLKMK-RWIVDELESSMVLYFTG- 205 (357)
T ss_dssp HTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE---TTTEEEEEEECCC-HHHHHHHHHTEEEECC--
T ss_pred hCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe---CCCceeEEEEecC-hhhhhhcCceEEEEECC-
Confidence 478899999999998542 32 012479999864311 1122234555322 121 112223334444
Q ss_pred CCCCchHHHhhhhhcCc----cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHH
Q 023760 69 KETSSTTGMRESVETSL----LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSH 144 (277)
Q Consensus 69 K~vsSt~GM~~tv~TSp----l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~ 144 (277)
+..++++-.+..+.... .+...+. .+.++..++.+||+++|++.|+++...+ |..+.+-. | ..|.
T Consensus 206 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~aL~~~d~~~lg~lm~~~----~~~l~~~~----~--~vs~ 274 (357)
T 3k85_A 206 RSRSSAAIINEQKKNTSEGNQTAIEAMH-KIKQSAIDTKLALLKGDVGEFARILGEG----WENKKKMA----G--AITN 274 (357)
T ss_dssp --------------------CCTTHHHH-HHHHHHHHHHHHHTTTCHHHHHHHHHHH----HHHTTC-------------
T ss_pred CcccHHHHHHHHHHHhhcCcHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHhcC----C--CCCC
Confidence 44444443332211100 1111222 3446778899999999999999986432 22222100 0 1111
Q ss_pred HHHH-HHHHHHHHcCCCeEEEEeccCCC--eEEeeecccCHHHHHHHHHh
Q 023760 145 RIIS-YVERWNRSVGSPQVAYTFDAGPN--AVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 145 ~ii~-~V~~~nr~~g~~~v~yT~DAGPN--v~i~~~~~~~~~~~~~~l~~ 191 (277)
.-++ +++.. ++.|-. .+.-.=|||- +..|+++ +..+++.+.+.+
T Consensus 275 p~ld~l~~~a-~~~Ga~-GaklsGaG~gG~vial~~~-~~~~~~~~~l~~ 321 (357)
T 3k85_A 275 PMIQEAFDVA-TGAGAM-AGKVSGAGGGGFIMFVVEP-TRKEEVVRALNN 321 (357)
T ss_dssp ----CCSCTT-TTSCCS-EEEECCCC---CEEEECCH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HhcCCe-EeEecccCCCCEEEEEecH-HHHHHHHHHHHH
Confidence 1121 22222 235654 6788899999 7777774 555677777765
No 25
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=95.48 E-value=0.31 Score=43.26 Aligned_cols=170 Identities=12% Similarity=0.090 Sum_probs=91.0
Q ss_pred CCCCCChHHHHHHHHh------hcccc---ccccCCCeeeeccCCCC----------------CCCCceeEecCCCCCCc
Q 023760 1 MNLKENQSQLSAIARQ------GSGSA---CRSLFGGFVKWILGKEG----------------NGSDSLAVQLVDEEHWN 55 (277)
Q Consensus 1 ~~l~~~~~~lS~lAR~------GSGSA---cRSi~GGfV~W~~G~~~----------------dg~dS~A~~v~~~~hw~ 55 (277)
|+++++..++-++|.. |.||. +=|.|||++........ ....-..+++..+ +
T Consensus 122 ~~~~~~~~~l~~la~~~E~~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 198 (335)
T 3gon_A 122 YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPT---L 198 (335)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCC---S
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCCCCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCc---c
Confidence 5788999999999875 22332 23789999877644210 0011122333322 2
Q ss_pred cceEEEEEEcCCCCCCCchHHHhhhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCC
Q 023760 56 DLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP 135 (277)
Q Consensus 56 ~l~~ii~vvs~~~K~vsSt~GM~~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Pp 135 (277)
++++++ +... ++. +|.-+-..+.. ...+..+.+ ..++..++.+|++++|++.||++...+-..+|..-..-
T Consensus 199 ~~~l~~--~~~~-~~~-~t~~~v~~v~~-~~~~~~~~~-~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~i--- 269 (335)
T 3gon_A 199 ECDFLV--GWTK-EVA-VSSHMVQQIKQ-NINQNFLTS-SKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDI--- 269 (335)
T ss_dssp CCEEEE--EECC-CCC-CHHHHHHHHGG-GCCHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred ccceEE--eecC-Chh-hHHHHHHHHHH-HhHHHHHHH-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcC---
Confidence 233333 3333 233 34444333332 233344443 46778999999999999999999887766676652111
Q ss_pred eEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccC--CCeEEeeecccCHHHHHHHHHh
Q 023760 136 IFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PNAVLIARNRKIATELLQRLLF 191 (277)
Q Consensus 136 i~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAG--PNv~i~~~~~~~~~~~~~~l~~ 191 (277)
.+|.--.+++. . ++.|- .+=-.=|| +-+..++.+++..++|.+++++
T Consensus 270 ---s~p~ld~l~~~---a-~~~g~--~akltGAG~Ggc~ial~~~~~~~~~i~~~~~~ 318 (335)
T 3gon_A 270 ---YTPLLRQLKEA---S-QDLQA--VAKSSGAGGGDCGIALSFDAQSTKTLKNRWAD 318 (335)
T ss_dssp ---CCHHHHHHHHT---T-TTSSE--EEEECTTCSSSEEEEEECSHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHH---H-HhCCc--EEEEccccchheEEEEECCHHHHHHHHHHHHH
Confidence 12333333332 2 23332 23233455 6677777644444455555544
No 26
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=92.33 E-value=3.1 Score=40.01 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHc---CCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHcCCCeEEEEeccC--CC
Q 023760 97 KRIVQMEEAIQN---HDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAG--PN 171 (277)
Q Consensus 97 ~~~~~m~~AI~~---~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~g~~~v~yT~DAG--PN 171 (277)
+|..++.+|+++ +|++.||++. ++-|..|.+-+ .+ ..+..-++++.. ++.|.. .+--.=|| +-
T Consensus 360 ~rv~~~~~aL~~~~~~d~~~lg~lm----~~sh~slr~l~-~v--s~peld~l~~~a----~~~Ga~-GarltGAG~GG~ 427 (478)
T 2a2c_A 360 ARVLQFKKICEEAPENMVQLLGELM----NQSHMSCRDMY-EC--SCPELDQLVDIC----RKFGAQ-GSRLTGAGWGGC 427 (478)
T ss_dssp HHHHHHHHHHHHCCTTHHHHHHHHH----HHHHHHHHHTS-CC--CCHHHHHHHHHH----HHTTCS-EEEECTTCSSSE
T ss_pred HHHHHHHHHHHhccccHHHHHHHHH----HHHHHHHHhcc-cC--CCHHHHHHHHHH----HhCCCc-EEEeccCCCccE
Confidence 367788899999 9999999996 34566654422 01 134444444333 334655 55566675 88
Q ss_pred eEEeeecccCHHHHHHHHHhcCCC
Q 023760 172 AVLIARNRKIATELLQRLLFFFPP 195 (277)
Q Consensus 172 v~i~~~~~~~~~~~~~~l~~~f~~ 195 (277)
+..|+++ +..+++.+.+.+.|..
T Consensus 428 viaLv~~-~~~~~~~~~l~~~y~~ 450 (478)
T 2a2c_A 428 TVSMVPA-DKLPSFLANVHKAYYQ 450 (478)
T ss_dssp EEEEEEG-GGHHHHHHHHHHHHHC
T ss_pred EEEEEcH-HHHHHHHHHHHHHHHH
Confidence 8888884 6667888888876643
No 27
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=83.40 E-value=5.9 Score=39.05 Aligned_cols=95 Identities=20% Similarity=0.199 Sum_probs=65.6
Q ss_pred HHHHHhhhhhh--hHHHHHHHHHcC-------CHHHHHHHHHHhHHHHHHHhccCCCCeEeeehhHHHHHHHHHHHHHHc
Q 023760 87 LQHRAKEVVPK--RIVQMEEAIQNH-------DFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 157 (277)
Q Consensus 87 ~~~r~~~~v~~--~~~~m~~AI~~~-------Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~S~~ii~~V~~~nr~~ 157 (277)
...|+++++.+ |..++.+|++++ |++.||++. ++.|..|.+-+ ..|..=++.+.+.-++.
T Consensus 382 l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm----~~sH~slr~~~-------~vS~peld~lv~~a~~~ 450 (520)
T 3v2u_C 382 LYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLM----NESQASCDKLY-------ECSCIETNQICSIALAN 450 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH----HHHHHHHHHTS-------CCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHH----HHHHHHHHHhc-------CCCcHHHHHHHHHHHhC
Confidence 45688887665 778888999997 599999998 67777776543 22222333333332345
Q ss_pred CCCeEEEEeccC--CCeEEee---ecccCHHHHHHHHHhcCC
Q 023760 158 GSPQVAYTFDAG--PNAVLIA---RNRKIATELLQRLLFFFP 194 (277)
Q Consensus 158 g~~~v~yT~DAG--PNv~i~~---~~~~~~~~~~~~l~~~f~ 194 (277)
|.. .+.-.-|| +-+..|+ + ++..+++.+.+.+.|.
T Consensus 451 Ga~-GarlTGaG~GGc~iaLv~~~~-~~~~~~~~~~l~~~y~ 490 (520)
T 3v2u_C 451 GSF-GSRLTGAGWGGCTIHLVPSGA-NGNVEQVRKALIEKFY 490 (520)
T ss_dssp TCS-EEEECSSCSSSEEEEEEEEST-TCSHHHHHHHHHHHTH
T ss_pred CCC-EEEEecCCCCceEEEEEcCCC-HHHHHHHHHHHHHHHH
Confidence 765 66777888 8888888 5 5777889988887664
No 28
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=44.01 E-value=25 Score=27.41 Aligned_cols=40 Identities=13% Similarity=0.342 Sum_probs=32.6
Q ss_pred cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhc
Q 023760 86 LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCL 130 (277)
Q Consensus 86 l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l 130 (277)
+++.-+++ .|+++..|++|+.++|++.+.+++ .++|..|-
T Consensus 25 lL~~fl~~-~~~~~~~l~~a~~~~d~~~l~~~a----HkLkGaa~ 64 (119)
T 3myf_A 25 MLKMLLDS-LPETVEKIQTALGQNDQATMLSTI----HKLHGASC 64 (119)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHTCHHHHHHHH----HHHHHHHT
T ss_pred HHHHHHHh-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHHH
Confidence 45556665 689999999999999999999886 67787763
No 29
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=35.93 E-value=31 Score=27.00 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=33.3
Q ss_pred hhhhcCccHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHH
Q 023760 79 ESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLT 118 (277)
Q Consensus 79 ~tv~TSpl~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~ 118 (277)
+....+.+++.-+++ .++++..+++|+.++|+..+.+++
T Consensus 29 k~~~~~d~l~~fl~s-~~~Dl~~L~~A~~~~D~~~l~~~a 67 (116)
T 1sr2_A 29 AQLHASGYYALFVDT-VPDDVKRLYTEAATSDFAALAQTA 67 (116)
T ss_dssp HHHHHHTTHHHHTTT-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred chhchHHHHHHHHHH-hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 334577888888886 799999999999999999999887
No 30
>1jsu_C P27, KIP1, CIP2; complex (transferase/cyclin/inhibitor), kinase, cell cycle, cell division, CDK, cyclin, inhibitor; HET: TPO; 2.30A {Homo sapiens} SCOP: j.55.1.1
Probab=29.02 E-value=14 Score=28.01 Aligned_cols=9 Identities=78% Similarity=1.394 Sum_probs=5.0
Q ss_pred ccccccCCC
Q 023760 20 SACRSLFGG 28 (277)
Q Consensus 20 SAcRSi~GG 28 (277)
||||.|||.
T Consensus 5 ~a~R~LFG~ 13 (84)
T 1jsu_C 5 SACRNLFGP 13 (84)
T ss_dssp TTCCCSSCC
T ss_pred chhhhcCCC
Confidence 555555554
No 31
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=27.42 E-value=65 Score=27.23 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=25.8
Q ss_pred cHHHHHhhhhhhhHHHHHHHHH-cCCHHHHHHHH
Q 023760 86 LLQHRAKEVVPKRIVQMEEAIQ-NHDFSSFAQLT 118 (277)
Q Consensus 86 l~~~r~~~~v~~~~~~m~~AI~-~~Df~~fgei~ 118 (277)
+...-+++ +++++.+|++|+. .+||+++..++
T Consensus 31 lV~~F~ed-se~~l~~L~~AL~~~~D~~~L~~~a 63 (167)
T 2r25_A 31 LIIQFIDQ-AQTTFAQMQRQLDGEKNLTELDNLG 63 (167)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHh-HHHHHHHHHHHHhcccCHHHHHHHH
Confidence 34445555 6889999999999 99999998765
No 32
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=27.12 E-value=73 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=25.0
Q ss_pred cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHH
Q 023760 86 LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLT 118 (277)
Q Consensus 86 l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~ 118 (277)
++..-+++ +++.+..|.+|+.++|++.+.+++
T Consensus 32 ll~~F~~e-~~~~l~~L~~a~~~~d~~~~~~~a 63 (125)
T 2a0b_A 32 GLAVFEKM-MPGYVSVLESNLTAQDKKGIVEEG 63 (125)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH-hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34445555 688999999999999999877654
No 33
>3kl4_B DPAP B, YSCV, signal peptide of yeast dipeptidyl aminopeptidase; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Saccharomyces cerevisiae}
Probab=26.84 E-value=11 Score=24.71 Aligned_cols=11 Identities=64% Similarity=0.809 Sum_probs=6.9
Q ss_pred HHhhccccccc
Q 023760 14 ARQGSGSACRS 24 (277)
Q Consensus 14 AR~GSGSAcRS 24 (277)
||-||||.+-|
T Consensus 1 arsgsgsgsgs 11 (42)
T 3kl4_B 1 ARSGSGSGSGS 11 (42)
T ss_pred CCCCCCCCCcc
Confidence 57777766544
No 34
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.38 E-value=63 Score=26.29 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=25.3
Q ss_pred cHHHHHhhhhhhhHHHHHHHHHcC--CHHHHHHHH
Q 023760 86 LLQHRAKEVVPKRIVQMEEAIQNH--DFSSFAQLT 118 (277)
Q Consensus 86 l~~~r~~~~v~~~~~~m~~AI~~~--Df~~fgei~ 118 (277)
+....+++ +++++..|++|+.++ |++.+..++
T Consensus 45 ll~~Fl~d-~~~~l~~L~~al~~~~~D~~~l~~~a 78 (153)
T 3us6_A 45 VVSLFFDD-SERILKDLSFAVDQQSIDFKKVDAHV 78 (153)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 34455665 688999999999998 999997655
No 35
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=22.13 E-value=46 Score=26.19 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=31.8
Q ss_pred cHHHHHhhhhhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhc
Q 023760 86 LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCL 130 (277)
Q Consensus 86 l~~~r~~~~v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l 130 (277)
+++.-+++ .++++..|++|+.++|++.+.+++ .++|..|-
T Consensus 34 lL~~fl~~-~~~~~~~l~~a~~~~d~~~l~~~a----HkLkGaa~ 73 (123)
T 3iqt_A 34 MLQMLLDF-LPEVRNKVEEQLVGENPEGLVDLI----HKLHGSCG 73 (123)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHH----HHHHHHHT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcCCHHHHHHHH----HHHHHHHH
Confidence 34444554 689999999999999999999886 67777763
No 36
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=21.59 E-value=26 Score=26.63 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=18.7
Q ss_pred HHHHHhhccccccccCCCeeeeccCC
Q 023760 11 SAIARQGSGSACRSLFGGFVKWILGK 36 (277)
Q Consensus 11 S~lAR~GSGSAcRSi~GGfV~W~~G~ 36 (277)
..|+-+ +.=..|++|||+..+..|.
T Consensus 11 e~l~~l-g~i~~r~MFGg~~l~~~g~ 35 (105)
T 2od0_A 11 KLFEAL-GTIKSRSMFGGFGLFADET 35 (105)
T ss_dssp HHHGGG-SCCEEEEETTEEEEEETTE
T ss_pred HHHhcc-CCceEeeccCcEEEEECCE
Confidence 345555 4456899999999999874
No 37
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=21.13 E-value=1.2e+02 Score=23.44 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCC---eEee-----ehhHHHHHHHHHHHHHHcCCC
Q 023760 95 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPP---IFYM-----NDTSHRIISYVERWNRSVGSP 160 (277)
Q Consensus 95 v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Pp---i~Y~-----n~~S~~ii~~V~~~nr~~g~~ 160 (277)
.+..+-++.+-|.+.+. +.=.+.|.+-.|=.....-|. ++|| .+..-.|++.|.+||+..|.|
T Consensus 11 Te~Efi~lv~~I~~~~~---~~E~e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~nG~p 81 (94)
T 3u43_A 11 TEAEFLEFVKKICRAEG---ATEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKS 81 (94)
T ss_dssp BHHHHHHHHHHHHHTCC---SSHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 34455555555555432 112235555556555555554 5666 467889999999999988988
No 38
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=20.76 E-value=1.1e+02 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=27.2
Q ss_pred hhhhHHHHHHHHHcCCHHHHHHHHHHhHHHHHHHhccCCCCeEeeehh
Q 023760 95 VPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDT 142 (277)
Q Consensus 95 v~~~~~~m~~AI~~~Df~~fgei~e~ds~~mHA~~l~t~Ppi~Y~n~~ 142 (277)
+-+-++++.+||.++|++.+.++. -|-++|+.+.
T Consensus 14 I~~~~~~~~~Ai~~gD~~~~~~l~--------------~~dv~~Fd~~ 47 (143)
T 2f86_B 14 IVRVTQTLLDAISCKDFETYTRLC--------------DTSMTCFEPE 47 (143)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHE--------------EEEEEEECGG
T ss_pred HHHHHHHHHHHHHccCHHHHHHhc--------------CCCEEEEccC
Confidence 567889999999999999998664 4667777663
No 39
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Probab=20.29 E-value=76 Score=27.15 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=16.9
Q ss_pred CeEEEEeccCCCeEEeeecccCHHHHHHHHHhc
Q 023760 160 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFF 192 (277)
Q Consensus 160 ~~v~yT~DAGPNv~i~~~~~~~~~~~~~~l~~~ 192 (277)
..|+.|||-||+ +..+.++..|+++
T Consensus 33 k~VaLTFDDGp~--------~~~~~il~iL~~~ 57 (230)
T 2y8u_A 33 NTIALTFDDGPS--------EYTPQLLDLLSRY 57 (230)
T ss_dssp TEEEEEEESCCC--------TTHHHHHHHHHHT
T ss_pred CEEEEEecCCch--------hhHHHHHHHHHHc
Confidence 358999999997 1233566666553
Done!