Query 023761
Match_columns 277
No_of_seqs 276 out of 2175
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 06:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02983 biotin carboxyl carri 100.0 5.4E-52 1.2E-56 380.0 26.0 266 1-277 1-274 (274)
2 TIGR00531 BCCP acetyl-CoA carb 100.0 7.7E-31 1.7E-35 225.2 19.0 156 105-276 1-156 (156)
3 PRK06302 acetyl-CoA carboxylas 100.0 1.8E-30 3.8E-35 222.7 18.9 155 105-276 1-155 (155)
4 COG0511 AccB Biotin carboxyl c 99.9 4.7E-27 1E-31 198.4 13.2 140 110-277 1-140 (140)
5 PRK05889 putative acetyl-CoA c 99.7 9.8E-17 2.1E-21 120.2 8.6 68 202-276 4-71 (71)
6 PF00364 Biotin_lipoyl: Biotin 99.7 3.6E-17 7.9E-22 123.7 4.7 73 202-275 2-74 (74)
7 PRK07051 hypothetical protein; 99.7 4.9E-16 1.1E-20 119.2 9.8 76 201-276 4-79 (80)
8 PRK08225 acetyl-CoA carboxylas 99.7 4.6E-16 9.9E-21 115.8 8.3 68 202-276 3-70 (70)
9 PRK06748 hypothetical protein; 99.6 1.1E-15 2.4E-20 119.2 8.7 69 201-276 5-74 (83)
10 PRK06549 acetyl-CoA carboxylas 99.6 3.5E-15 7.5E-20 125.3 11.6 71 199-276 60-130 (130)
11 PRK05641 putative acetyl-CoA c 99.6 1.1E-14 2.3E-19 125.3 11.2 70 199-275 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.5 3.1E-14 6.7E-19 102.4 8.5 67 202-275 1-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 3.2E-13 6.8E-18 137.3 9.6 71 199-276 524-594 (596)
14 PRK09282 pyruvate carboxylase 99.4 1.3E-12 2.7E-17 133.0 9.1 73 198-277 520-592 (592)
15 PRK14875 acetoin dehydrogenase 99.3 2.2E-12 4.7E-17 119.3 8.4 64 207-277 15-78 (371)
16 cd06663 Biotinyl_lipoyl_domain 99.3 4.3E-12 9.4E-17 94.3 8.4 61 208-275 13-73 (73)
17 PRK14040 oxaloacetate decarbox 99.3 3.1E-12 6.6E-17 130.2 9.1 70 200-276 524-593 (593)
18 TIGR01108 oadA oxaloacetate de 99.3 3.2E-12 6.9E-17 129.8 9.0 67 199-272 516-582 (582)
19 COG4770 Acetyl/propionyl-CoA c 99.3 2.9E-12 6.3E-17 128.3 7.8 72 199-277 574-645 (645)
20 TIGR01235 pyruv_carbox pyruvat 99.3 4.6E-12 1E-16 136.8 8.9 73 197-276 1071-1143(1143)
21 TIGR02712 urea_carbox urea car 99.3 6E-12 1.3E-16 136.6 9.8 73 197-276 1129-1201(1201)
22 PLN02226 2-oxoglutarate dehydr 99.3 4.9E-12 1.1E-16 125.3 8.2 63 207-276 104-166 (463)
23 PRK12999 pyruvate carboxylase; 99.3 6.7E-12 1.4E-16 135.7 9.1 72 199-277 1075-1146(1146)
24 PTZ00144 dihydrolipoamide succ 99.3 1.3E-11 2.8E-16 121.1 8.4 63 207-276 57-119 (418)
25 COG1038 PycA Pyruvate carboxyl 99.2 1E-11 2.2E-16 128.2 6.5 76 194-276 1073-1148(1149)
26 COG0508 AceF Pyruvate/2-oxoglu 99.2 5.2E-11 1.1E-15 116.3 7.8 62 208-276 16-77 (404)
27 PRK05704 dihydrolipoamide succ 99.2 6.4E-11 1.4E-15 115.7 8.2 63 207-276 15-77 (407)
28 TIGR01347 sucB 2-oxoglutarate 99.1 2.4E-10 5.3E-15 111.6 8.3 62 208-276 14-75 (403)
29 TIGR02927 SucB_Actino 2-oxoglu 99.0 4E-10 8.6E-15 114.8 7.9 63 207-276 148-210 (590)
30 PRK11854 aceF pyruvate dehydro 99.0 3.7E-10 8.1E-15 115.7 7.5 64 206-276 216-279 (633)
31 PRK11854 aceF pyruvate dehydro 99.0 6.5E-10 1.4E-14 113.9 8.2 63 207-276 13-75 (633)
32 TIGR01348 PDHac_trf_long pyruv 99.0 1E-09 2.2E-14 110.9 7.4 68 202-276 118-190 (546)
33 KOG0369 Pyruvate carboxylase [ 99.0 1.1E-09 2.3E-14 112.0 7.2 77 194-277 1100-1176(1176)
34 PRK11855 dihydrolipoamide acet 98.9 1.8E-09 3.8E-14 109.0 7.8 62 208-276 132-193 (547)
35 KOG0559 Dihydrolipoamide succi 98.9 4.1E-10 8.8E-15 108.1 2.9 63 208-277 86-148 (457)
36 cd06849 lipoyl_domain Lipoyl d 98.9 6.9E-09 1.5E-13 73.3 8.3 64 205-275 11-74 (74)
37 PLN02528 2-oxoisovalerate dehy 98.9 2.9E-09 6.4E-14 104.4 8.3 62 208-276 12-73 (416)
38 TIGR01348 PDHac_trf_long pyruv 98.9 4.8E-09 1E-13 106.0 8.5 67 203-276 8-74 (546)
39 PRK11855 dihydrolipoamide acet 98.8 9.1E-09 2E-13 103.8 8.2 62 208-276 15-76 (547)
40 PRK11856 branched-chain alpha- 98.8 1.2E-08 2.5E-13 99.4 8.2 63 207-276 15-77 (411)
41 TIGR01349 PDHac_trf_mito pyruv 98.8 1.5E-08 3.3E-13 99.9 7.6 63 207-276 12-75 (435)
42 KOG0238 3-Methylcrotonyl-CoA c 98.8 6.2E-09 1.3E-13 103.8 4.6 69 201-276 602-670 (670)
43 PLN02744 dihydrolipoyllysine-r 98.8 1.6E-08 3.5E-13 102.2 7.6 61 208-275 126-187 (539)
44 PRK11892 pyruvate dehydrogenas 98.7 4.4E-08 9.6E-13 97.5 7.7 62 208-276 16-78 (464)
45 TIGR02927 SucB_Actino 2-oxoglu 98.6 5E-08 1.1E-12 99.6 7.4 63 207-276 15-77 (590)
46 KOG0557 Dihydrolipoamide acety 98.6 5.7E-08 1.2E-12 95.8 5.8 67 203-276 46-114 (470)
47 PRK09783 copper/silver efflux 98.5 3.4E-07 7.3E-12 89.3 8.3 69 201-276 124-241 (409)
48 TIGR00998 8a0101 efflux pump m 98.5 2.3E-07 5E-12 86.4 6.5 33 245-277 205-237 (334)
49 PRK01202 glycine cleavage syst 98.4 4.3E-07 9.4E-12 75.9 6.5 55 223-277 45-106 (127)
50 PRK10476 multidrug resistance 98.4 4.5E-07 9.8E-12 85.8 6.3 35 199-240 47-81 (346)
51 TIGR01730 RND_mfp RND family e 98.3 8.9E-07 1.9E-11 81.1 5.5 69 201-276 27-166 (322)
52 PRK10559 p-hydroxybenzoic acid 98.3 1.5E-06 3.3E-11 81.7 6.8 70 200-276 47-186 (310)
53 PRK15136 multidrug efflux syst 98.2 1.5E-06 3.3E-11 84.2 5.5 32 245-276 216-247 (390)
54 PRK09578 periplasmic multidrug 98.2 2.3E-06 4.9E-11 82.2 6.4 70 200-276 63-205 (385)
55 PRK03598 putative efflux pump 98.2 3E-06 6.5E-11 79.6 6.4 32 245-276 204-235 (331)
56 PRK15030 multidrug efflux syst 98.2 3.2E-06 6.9E-11 81.8 6.5 70 199-275 64-206 (397)
57 cd06848 GCS_H Glycine cleavage 98.1 4.1E-06 9E-11 66.2 5.4 56 204-265 24-79 (96)
58 PRK09859 multidrug efflux syst 98.1 3.8E-06 8.3E-11 80.8 6.2 69 200-275 61-202 (385)
59 KOG0368 Acetyl-CoA carboxylase 98.1 3.6E-06 7.9E-11 92.0 6.3 71 198-276 683-753 (2196)
60 TIGR03309 matur_yqeB selenium- 98.1 1.3E-05 2.7E-10 74.5 8.5 65 200-277 164-228 (256)
61 TIGR03077 not_gcvH glycine cle 98.0 7.2E-06 1.6E-10 67.3 5.0 55 222-276 37-98 (110)
62 KOG0558 Dihydrolipoamide trans 98.0 2.7E-06 5.9E-11 82.0 2.7 56 221-276 84-139 (474)
63 TIGR00527 gcvH glycine cleavag 98.0 9.6E-06 2.1E-10 67.8 5.4 49 216-264 34-85 (127)
64 PRK11578 macrolide transporter 98.0 1.1E-05 2.3E-10 77.1 6.1 34 200-240 61-94 (370)
65 PRK11556 multidrug efflux syst 98.0 1.1E-05 2.4E-10 78.8 5.8 70 199-275 86-228 (415)
66 PRK13380 glycine cleavage syst 98.0 6.8E-06 1.5E-10 70.3 3.7 58 200-264 35-93 (144)
67 PRK00624 glycine cleavage syst 97.9 2.3E-05 5.1E-10 64.6 5.5 55 222-276 39-100 (114)
68 PF12700 HlyD_2: HlyD family s 97.8 1.1E-05 2.4E-10 74.0 3.1 33 200-240 21-53 (328)
69 TIGR02971 heterocyst_DevB ABC 97.8 4.1E-05 8.9E-10 71.5 6.7 35 200-241 13-50 (327)
70 PF13533 Biotin_lipoyl_2: Biot 97.7 2.7E-05 5.8E-10 54.9 3.3 37 201-244 3-39 (50)
71 PF13533 Biotin_lipoyl_2: Biot 97.7 5.8E-05 1.3E-09 53.2 4.9 33 245-277 3-35 (50)
72 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00033 7.2E-09 66.0 8.5 66 200-275 229-297 (298)
73 TIGR01843 type_I_hlyD type I s 97.5 0.0002 4.4E-09 68.2 7.0 34 200-240 43-76 (423)
74 cd06251 M14_ASTE_ASPA_like_1 A 97.4 0.00069 1.5E-08 63.3 8.6 65 201-275 220-286 (287)
75 cd06252 M14_ASTE_ASPA_like_2 A 97.4 0.00071 1.5E-08 64.1 8.6 66 201-276 245-314 (316)
76 PRK12784 hypothetical protein; 97.4 0.00073 1.6E-08 52.5 6.8 68 202-276 7-75 (84)
77 cd06250 M14_PaAOTO_like An unc 97.3 0.00071 1.5E-08 65.5 7.7 66 200-275 289-358 (359)
78 TIGR02994 ectoine_eutE ectoine 97.3 0.0011 2.3E-08 63.5 8.4 65 201-275 256-324 (325)
79 PRK05889 putative acetyl-CoA c 97.2 0.00043 9.4E-09 51.6 4.3 33 244-276 2-34 (71)
80 PF13375 RnfC_N: RnfC Barrel s 97.2 0.0011 2.4E-08 53.6 6.2 40 220-260 43-82 (101)
81 PF01597 GCV_H: Glycine cleava 97.1 0.00093 2E-08 55.4 5.6 41 222-262 38-78 (122)
82 COG1566 EmrA Multidrug resista 97.1 0.00067 1.4E-08 65.8 5.1 34 244-277 208-241 (352)
83 COG0509 GcvH Glycine cleavage 97.0 0.00071 1.5E-08 57.3 4.2 43 222-264 46-88 (131)
84 cd06254 M14_ASTE_ASPA_like_4 A 97.0 0.0019 4.2E-08 60.3 7.2 65 199-273 222-288 (288)
85 PRK06748 hypothetical protein; 96.8 0.0022 4.8E-08 50.3 5.0 33 244-276 4-36 (83)
86 PRK08225 acetyl-CoA carboxylas 96.8 0.0019 4.2E-08 47.7 4.4 33 244-276 1-33 (70)
87 cd06850 biotinyl_domain The bi 96.5 0.0031 6.7E-08 44.7 3.7 30 247-276 2-31 (67)
88 COG3608 Predicted deacylase [G 96.4 0.0098 2.1E-07 57.4 7.0 65 200-274 256-323 (331)
89 cd06255 M14_ASTE_ASPA_like_5 A 96.2 0.016 3.4E-07 54.4 7.3 51 200-258 231-283 (293)
90 COG0511 AccB Biotin carboxyl c 96.0 0.0088 1.9E-07 50.7 4.1 34 243-276 69-102 (140)
91 PRK06549 acetyl-CoA carboxylas 95.9 0.012 2.6E-07 49.7 4.5 33 244-276 61-93 (130)
92 PRK07051 hypothetical protein; 95.9 0.0093 2E-07 45.6 3.5 32 201-239 48-79 (80)
93 PRK09439 PTS system glucose-sp 95.8 0.021 4.5E-07 50.3 6.0 65 201-276 21-124 (169)
94 PRK10476 multidrug resistance 95.7 0.019 4E-07 54.5 5.5 40 236-277 42-81 (346)
95 PF00364 Biotin_lipoyl: Biotin 95.7 0.013 2.9E-07 44.0 3.6 32 245-276 1-38 (74)
96 cd00210 PTS_IIA_glc PTS_IIA, P 95.6 0.038 8.2E-07 46.3 6.5 20 257-276 83-102 (124)
97 TIGR00830 PTBA PTS system, glu 95.5 0.037 8.1E-07 46.2 6.2 20 257-276 83-102 (121)
98 PRK05641 putative acetyl-CoA c 95.5 0.018 4E-07 49.8 4.3 32 245-276 85-116 (153)
99 TIGR00998 8a0101 efflux pump m 95.4 0.019 4.2E-07 53.5 4.6 35 243-277 41-75 (334)
100 PF04952 AstE_AspA: Succinylgl 95.4 0.044 9.5E-07 50.4 6.8 66 201-276 221-290 (292)
101 PF13437 HlyD_3: HlyD family s 95.3 0.028 6.1E-07 43.9 4.5 33 202-241 1-33 (105)
102 PF00529 HlyD: HlyD family sec 95.2 0.012 2.6E-07 53.5 2.5 33 202-241 3-35 (305)
103 TIGR01000 bacteriocin_acc bact 95.2 0.035 7.6E-07 54.9 5.9 41 237-277 52-92 (457)
104 PF00358 PTS_EIIA_1: phosphoen 95.2 0.044 9.5E-07 46.4 5.5 65 201-276 3-106 (132)
105 PRK09859 multidrug efflux syst 95.1 0.035 7.6E-07 53.5 5.3 54 223-277 41-94 (385)
106 TIGR01843 type_I_hlyD type I s 95.0 0.036 7.8E-07 52.8 5.2 41 236-276 35-75 (423)
107 TIGR01936 nqrA NADH:ubiquinone 95.0 0.025 5.3E-07 56.7 4.1 39 221-260 43-81 (447)
108 PRK15136 multidrug efflux syst 95.0 0.033 7.2E-07 54.2 4.9 34 244-277 61-94 (390)
109 PRK09578 periplasmic multidrug 94.9 0.042 9.1E-07 52.9 5.4 53 224-277 44-96 (385)
110 PRK11556 multidrug efflux syst 94.9 0.042 9.1E-07 53.9 5.5 54 223-277 67-120 (415)
111 PF05896 NQRA: Na(+)-transloca 94.9 0.029 6.4E-07 52.4 4.1 37 221-260 43-81 (257)
112 PRK11578 macrolide transporter 94.9 0.049 1.1E-06 52.1 5.7 43 234-277 52-94 (370)
113 TIGR01235 pyruv_carbox pyruvat 94.9 0.032 7E-07 61.6 4.9 69 200-276 1038-1106(1143)
114 PRK03598 putative efflux pump 94.8 0.057 1.2E-06 50.8 5.9 42 234-277 35-76 (331)
115 PF09891 DUF2118: Uncharacteri 94.7 0.041 8.8E-07 47.7 4.2 40 221-260 94-134 (150)
116 TIGR03794 NHPM_micro_HlyD NHPM 94.7 0.058 1.3E-06 52.6 5.7 36 242-277 56-91 (421)
117 PRK15030 multidrug efflux syst 94.6 0.059 1.3E-06 52.3 5.5 43 234-277 56-98 (397)
118 TIGR01945 rnfC electron transp 94.5 0.038 8.3E-07 54.7 4.0 39 220-259 44-82 (435)
119 PRK05352 Na(+)-translocating N 94.5 0.044 9.6E-07 54.8 4.4 38 221-259 44-81 (448)
120 COG2190 NagE Phosphotransferas 94.5 0.077 1.7E-06 46.3 5.3 20 257-276 90-109 (156)
121 PRK10559 p-hydroxybenzoic acid 94.2 0.065 1.4E-06 50.6 4.7 33 245-277 48-80 (310)
122 TIGR00999 8a0102 Membrane Fusi 94.1 0.068 1.5E-06 47.9 4.3 32 245-276 89-120 (265)
123 KOG3373 Glycine cleavage syste 94.1 0.035 7.6E-07 48.7 2.3 42 224-265 89-130 (172)
124 TIGR03794 NHPM_micro_HlyD NHPM 94.0 0.047 1E-06 53.2 3.3 34 200-240 58-91 (421)
125 COG1566 EmrA Multidrug resista 93.9 0.075 1.6E-06 51.8 4.6 34 244-277 53-86 (352)
126 PRK05035 electron transport co 93.6 0.078 1.7E-06 55.8 4.4 39 220-259 50-88 (695)
127 COG4656 RnfC Predicted NADH:ub 93.4 0.063 1.4E-06 54.6 3.1 38 220-259 46-83 (529)
128 PRK10255 PTS system N-acetyl g 92.9 0.26 5.7E-06 51.6 7.0 66 200-276 498-602 (648)
129 PRK09824 PTS system beta-gluco 92.9 0.22 4.8E-06 51.9 6.3 64 202-276 480-582 (627)
130 COG1726 NqrA Na+-transporting 92.7 0.15 3.4E-06 50.0 4.6 39 221-262 43-83 (447)
131 COG0845 AcrA Membrane-fusion p 92.7 0.25 5.4E-06 44.7 5.7 45 232-277 55-99 (372)
132 PRK09783 copper/silver efflux 92.7 0.2 4.3E-06 49.1 5.4 43 234-276 112-156 (409)
133 TIGR01995 PTS-II-ABC-beta PTS 92.6 0.28 6.1E-06 50.9 6.6 64 202-276 464-566 (610)
134 PRK05305 phosphatidylserine de 92.5 0.21 4.6E-06 44.8 5.0 48 222-273 155-202 (206)
135 TIGR00164 PS_decarb_rel phosph 92.2 0.25 5.3E-06 43.8 5.0 48 222-273 135-182 (189)
136 TIGR00531 BCCP acetyl-CoA carb 92.1 0.13 2.8E-06 44.5 2.9 33 200-239 124-156 (156)
137 PRK14042 pyruvate carboxylase 91.8 0.19 4.2E-06 52.1 4.3 32 245-276 526-557 (596)
138 TIGR01000 bacteriocin_acc bact 91.7 0.12 2.6E-06 51.1 2.7 33 201-240 60-92 (457)
139 PRK06302 acetyl-CoA carboxylas 91.7 0.16 3.5E-06 43.8 3.1 33 200-239 123-155 (155)
140 PRK14875 acetoin dehydrogenase 91.6 0.19 4.1E-06 46.5 3.7 35 201-242 46-80 (371)
141 PLN02983 biotin carboxyl carri 90.8 0.29 6.3E-06 46.2 4.0 30 247-276 200-236 (274)
142 cd06663 Biotinyl_lipoyl_domain 90.5 0.26 5.5E-06 36.1 2.8 31 201-238 43-73 (73)
143 PRK14040 oxaloacetate decarbox 90.4 0.31 6.8E-06 50.5 4.3 33 244-276 524-556 (593)
144 TIGR01108 oadA oxaloacetate de 90.2 0.34 7.3E-06 50.1 4.3 33 244-276 517-549 (582)
145 TIGR01995 PTS-II-ABC-beta PTS 90.1 0.7 1.5E-05 48.0 6.5 75 201-275 500-609 (610)
146 PLN02226 2-oxoglutarate dehydr 89.8 0.26 5.6E-06 49.7 3.0 35 200-241 134-168 (463)
147 PF07831 PYNP_C: Pyrimidine nu 89.7 0.45 9.7E-06 36.4 3.6 28 205-241 29-56 (75)
148 PRK09824 PTS system beta-gluco 89.3 0.91 2E-05 47.5 6.7 74 201-275 516-625 (627)
149 PRK09282 pyruvate carboxylase 89.3 0.45 9.7E-06 49.3 4.4 33 244-276 522-554 (592)
150 PF02666 PS_Dcarbxylase: Phosp 88.9 0.52 1.1E-05 41.9 4.0 64 201-274 137-202 (202)
151 COG4770 Acetyl/propionyl-CoA c 88.3 0.49 1.1E-05 48.9 3.8 31 246-276 577-607 (645)
152 COG0845 AcrA Membrane-fusion p 88.2 0.38 8.3E-06 43.4 2.8 32 202-240 68-99 (372)
153 COG4072 Uncharacterized protei 88.1 0.79 1.7E-05 39.5 4.4 51 202-259 93-144 (161)
154 PTZ00144 dihydrolipoamide succ 88.0 0.4 8.7E-06 47.8 2.9 36 200-242 87-122 (418)
155 PF06898 YqfD: Putative stage 87.5 5 0.00011 39.3 10.1 55 201-257 190-246 (385)
156 COG2190 NagE Phosphotransferas 87.0 0.86 1.9E-05 39.8 4.1 55 221-275 91-153 (156)
157 COG1038 PycA Pyruvate carboxyl 87.0 0.51 1.1E-05 50.7 3.1 69 199-276 1042-1111(1149)
158 cd06849 lipoyl_domain Lipoyl d 87.0 0.71 1.5E-05 31.7 3.0 31 201-238 44-74 (74)
159 TIGR02712 urea_carbox urea car 86.7 0.73 1.6E-05 51.5 4.3 33 244-276 1132-1164(1201)
160 PRK10255 PTS system N-acetyl g 86.5 1.3 2.9E-05 46.5 5.8 43 200-242 535-605 (648)
161 PF00358 PTS_EIIA_1: phosphoen 86.2 0.68 1.5E-05 39.2 2.9 43 201-243 40-110 (132)
162 PRK09439 PTS system glucose-sp 85.6 1.6 3.5E-05 38.5 5.1 21 221-241 106-126 (169)
163 TIGR01730 RND_mfp RND family e 85.4 0.81 1.8E-05 41.8 3.3 35 200-241 134-168 (322)
164 PRK05704 dihydrolipoamide succ 85.1 0.82 1.8E-05 45.2 3.3 36 200-242 45-80 (407)
165 PRK14844 bifunctional DNA-dire 85.0 1.1 2.3E-05 53.5 4.7 22 218-239 2421-2442(2836)
166 TIGR00999 8a0102 Membrane Fusi 84.4 0.92 2E-05 40.6 3.1 31 202-239 90-120 (265)
167 PRK12999 pyruvate carboxylase; 83.9 1.2 2.6E-05 49.6 4.3 33 244-276 1076-1108(1146)
168 TIGR01347 sucB 2-oxoglutarate 82.9 1.2 2.5E-05 44.2 3.3 35 200-241 43-77 (403)
169 COG0508 AceF Pyruvate/2-oxoglu 82.7 1.3 2.7E-05 43.9 3.5 35 200-241 45-79 (404)
170 TIGR02876 spore_yqfD sporulati 82.4 2.6 5.7E-05 41.3 5.6 36 201-236 187-222 (382)
171 KOG0559 Dihydrolipoamide succi 82.0 0.99 2.2E-05 44.6 2.4 35 200-241 115-149 (457)
172 PRK03934 phosphatidylserine de 80.0 2.4 5.3E-05 39.5 4.3 71 202-275 186-265 (265)
173 TIGR00830 PTBA PTS system, glu 78.5 1.4 3.1E-05 36.8 2.0 22 221-242 84-105 (121)
174 PLN02528 2-oxoisovalerate dehy 78.5 2.2 4.9E-05 42.3 3.7 35 201-242 42-76 (416)
175 PRK02597 rpoC2 DNA-directed RN 78.4 5.2 0.00011 45.3 6.8 37 220-256 404-447 (1331)
176 PRK03140 phosphatidylserine de 77.9 2.3 4.9E-05 39.6 3.3 64 202-275 195-258 (259)
177 PF12700 HlyD_2: HlyD family s 77.9 4.3 9.3E-05 37.2 5.2 32 202-240 136-192 (328)
178 COG4942 Membrane-bound metallo 77.5 1.5 3.3E-05 43.8 2.2 19 257-275 372-390 (420)
179 KOG0368 Acetyl-CoA carboxylase 77.4 3.1 6.7E-05 47.6 4.6 51 226-276 667-717 (2196)
180 COG3608 Predicted deacylase [G 75.8 3.1 6.6E-05 40.5 3.7 31 246-277 258-288 (331)
181 TIGR01349 PDHac_trf_mito pyruv 75.7 2.6 5.7E-05 42.0 3.3 34 201-241 43-77 (435)
182 PRK12784 hypothetical protein; 75.2 2.7 5.9E-05 33.0 2.6 33 244-276 5-37 (84)
183 cd00210 PTS_IIA_glc PTS_IIA, P 74.7 2.2 4.7E-05 35.8 2.1 21 221-241 84-104 (124)
184 KOG0369 Pyruvate carboxylase [ 74.1 5.8 0.00013 42.4 5.4 30 247-276 1109-1138(1176)
185 PRK11856 branched-chain alpha- 73.2 3.9 8.4E-05 40.1 3.8 35 201-242 46-80 (411)
186 KOG0238 3-Methylcrotonyl-CoA c 73.0 2.9 6.3E-05 43.1 2.9 30 247-276 604-633 (670)
187 PF02749 QRPTase_N: Quinolinat 72.3 4 8.7E-05 31.6 3.0 20 221-240 49-68 (88)
188 TIGR03309 matur_yqeB selenium- 71.6 4.5 9.8E-05 38.0 3.6 34 242-276 162-195 (256)
189 TIGR02645 ARCH_P_rylase putati 71.0 7 0.00015 40.0 5.1 42 235-276 404-469 (493)
190 TIGR02971 heterocyst_DevB ABC 69.2 6.1 0.00013 36.9 4.0 32 200-239 204-235 (327)
191 PRK09603 bifunctional DNA-dire 68.7 6.3 0.00014 47.6 4.6 23 216-238 2611-2633(2890)
192 PF01551 Peptidase_M23: Peptid 68.2 5.1 0.00011 30.7 2.8 21 221-241 55-75 (96)
193 PRK14844 bifunctional DNA-dire 66.2 7.1 0.00015 47.1 4.4 23 216-238 2521-2543(2836)
194 PLN02744 dihydrolipoyllysine-r 65.6 5.6 0.00012 41.0 3.2 26 251-276 125-150 (539)
195 PRK04350 thymidine phosphoryla 65.6 10 0.00023 38.7 5.0 40 237-276 398-461 (490)
196 cd06251 M14_ASTE_ASPA_like_1 A 65.1 8.3 0.00018 36.0 4.0 33 243-276 218-250 (287)
197 PF07831 PYNP_C: Pyrimidine nu 65.0 5.4 0.00012 30.4 2.2 20 257-276 35-54 (75)
198 cd06910 M14_ASTE_ASPA_like_7 A 62.9 14 0.0003 34.3 5.0 47 222-275 225-272 (272)
199 cd06255 M14_ASTE_ASPA_like_5 A 62.6 9.6 0.00021 35.8 4.0 32 244-276 231-262 (293)
200 PRK09603 bifunctional DNA-dire 62.3 10 0.00022 46.0 4.7 18 258-275 2616-2633(2890)
201 PRK11892 pyruvate dehydrogenas 62.2 7.8 0.00017 39.2 3.4 34 201-241 46-80 (464)
202 PRK04192 V-type ATP synthase s 62.1 13 0.00029 38.7 5.2 53 221-275 122-177 (586)
203 cd06253 M14_ASTE_ASPA_like_3 A 61.7 9.6 0.00021 36.0 3.8 32 244-276 229-260 (298)
204 COG1155 NtpA Archaeal/vacuolar 61.7 18 0.00039 37.5 5.9 54 221-275 120-175 (588)
205 TIGR03327 AMP_phos AMP phospho 61.3 13 0.00028 38.1 4.9 39 238-276 408-470 (500)
206 PF01551 Peptidase_M23: Peptid 61.0 16 0.00034 28.0 4.3 59 202-276 15-73 (96)
207 PRK02597 rpoC2 DNA-directed RN 60.9 9.5 0.00021 43.3 4.1 23 216-238 947-969 (1331)
208 cd06250 M14_PaAOTO_like An unc 60.1 11 0.00024 36.6 4.0 31 245-276 290-320 (359)
209 cd06254 M14_ASTE_ASPA_like_4 A 60.0 12 0.00025 35.0 4.0 34 242-276 221-254 (288)
210 cd01134 V_A-ATPase_A V/A-type 58.3 22 0.00047 35.2 5.6 53 221-275 53-108 (369)
211 PF05896 NQRA: Na(+)-transloca 57.6 6.6 0.00014 37.0 1.9 28 247-274 32-59 (257)
212 TIGR02994 ectoine_eutE ectoine 57.5 13 0.00029 35.6 4.0 30 246-276 257-286 (325)
213 PRK10871 nlpD lipoprotein NlpD 57.3 21 0.00046 34.6 5.3 19 257-275 271-289 (319)
214 TIGR00163 PS_decarb phosphatid 56.6 11 0.00025 34.4 3.3 48 226-274 189-236 (238)
215 PRK14698 V-type ATP synthase s 56.3 22 0.00047 39.5 5.8 53 222-276 123-178 (1017)
216 PF02749 QRPTase_N: Quinolinat 55.2 9.3 0.0002 29.5 2.1 24 253-276 44-67 (88)
217 TIGR02644 Y_phosphoryl pyrimid 54.7 12 0.00027 37.3 3.3 40 200-239 333-396 (405)
218 PRK05820 deoA thymidine phosph 54.3 20 0.00043 36.2 4.8 37 240-276 336-403 (440)
219 TIGR01042 V-ATPase_V1_A V-type 54.1 27 0.00059 36.6 5.8 53 222-276 123-178 (591)
220 cd06252 M14_ASTE_ASPA_like_2 A 53.6 24 0.00051 33.5 4.9 33 243-276 243-275 (316)
221 TIGR02644 Y_phosphoryl pyrimid 53.3 22 0.00048 35.5 4.9 39 238-276 327-396 (405)
222 PRK10871 nlpD lipoprotein NlpD 53.1 16 0.00035 35.3 3.8 41 201-241 230-292 (319)
223 TIGR02643 T_phosphoryl thymidi 53.0 22 0.00047 35.9 4.8 37 240-276 335-402 (437)
224 CHL00117 rpoC2 RNA polymerase 50.6 19 0.00041 41.2 4.3 40 217-256 402-449 (1364)
225 PRK06078 pyrimidine-nucleoside 50.0 26 0.00056 35.4 4.8 38 239-276 330-398 (434)
226 COG0157 NadC Nicotinate-nucleo 49.0 12 0.00027 35.6 2.3 21 221-241 68-88 (280)
227 KOG0557 Dihydrolipoamide acety 48.2 15 0.00032 37.3 2.8 25 252-276 52-76 (470)
228 TIGR02388 rpoC2_cyan DNA-direc 46.3 22 0.00047 40.2 3.9 23 216-238 945-967 (1227)
229 TIGR02643 T_phosphoryl thymidi 46.0 14 0.00031 37.2 2.3 41 200-240 339-403 (437)
230 PRK05820 deoA thymidine phosph 45.5 15 0.00032 37.1 2.3 41 200-240 340-404 (440)
231 cd06848 GCS_H Glycine cleavage 45.2 20 0.00043 28.0 2.6 27 250-276 26-53 (96)
232 PRK11637 AmiB activator; Provi 43.2 54 0.0012 32.2 5.8 20 221-240 381-400 (428)
233 PRK00044 psd phosphatidylserin 43.1 20 0.00044 33.8 2.7 48 226-275 237-285 (288)
234 PRK06078 pyrimidine-nucleoside 43.1 17 0.00037 36.6 2.3 42 200-241 335-400 (434)
235 TIGR01043 ATP_syn_A_arch ATP s 42.9 50 0.0011 34.6 5.7 52 222-275 120-174 (578)
236 COG0739 NlpD Membrane proteins 42.3 19 0.0004 32.2 2.3 21 220-240 215-235 (277)
237 PF09891 DUF2118: Uncharacteri 40.8 22 0.00047 31.0 2.3 40 226-276 73-112 (150)
238 KOG1668 Elongation factor 1 be 40.5 20 0.00043 33.3 2.2 39 203-246 168-207 (231)
239 TIGR00164 PS_decarb_rel phosph 39.2 77 0.0017 27.9 5.7 70 199-276 71-152 (189)
240 PF06898 YqfD: Putative stage 39.1 35 0.00076 33.5 3.7 34 241-274 186-226 (385)
241 TIGR02645 ARCH_P_rylase putati 39.0 20 0.00043 36.8 2.1 41 200-240 413-470 (493)
242 PRK05305 phosphatidylserine de 39.0 89 0.0019 27.9 6.1 70 199-276 90-172 (206)
243 CHL00117 rpoC2 RNA polymerase 38.7 83 0.0018 36.2 7.0 74 201-277 350-425 (1364)
244 PRK11637 AmiB activator; Provi 38.2 25 0.00053 34.7 2.6 17 259-275 382-398 (428)
245 PRK04350 thymidine phosphoryla 38.1 21 0.00046 36.5 2.1 41 200-240 405-462 (490)
246 TIGR02876 spore_yqfD sporulati 38.0 31 0.00068 33.9 3.2 31 244-274 186-223 (382)
247 PRK02259 aspartoacylase; Provi 37.8 23 0.00051 33.2 2.2 61 202-273 216-281 (288)
248 COG4072 Uncharacterized protei 37.7 68 0.0015 27.9 4.8 27 250-276 97-123 (161)
249 TIGR03327 AMP_phos AMP phospho 36.5 24 0.00051 36.3 2.2 41 200-240 414-471 (500)
250 PF13375 RnfC_N: RnfC Barrel s 35.5 63 0.0014 26.0 4.1 24 252-275 38-61 (101)
251 KOG2419 Phosphatidylserine dec 32.9 22 0.00047 38.0 1.2 32 201-240 886-917 (975)
252 cd01572 QPRTase Quinolinate ph 32.8 41 0.00088 31.5 3.0 21 221-241 62-82 (268)
253 PRK08072 nicotinate-nucleotide 32.5 32 0.0007 32.5 2.3 20 221-240 68-87 (277)
254 PRK13380 glycine cleavage syst 31.0 43 0.00094 28.6 2.6 31 246-276 37-68 (144)
255 PRK06149 hypothetical protein; 30.6 34 0.00073 37.5 2.3 40 201-240 443-496 (972)
256 PRK10718 RpoE-regulated lipopr 29.7 1E+02 0.0022 27.9 4.8 54 202-266 59-115 (191)
257 PF01333 Apocytochr_F_C: Apocy 29.1 20 0.00044 30.0 0.2 35 202-236 27-61 (118)
258 PRK06096 molybdenum transport 29.1 39 0.00085 32.1 2.2 20 221-240 65-84 (284)
259 TIGR02388 rpoC2_cyan DNA-direc 28.9 64 0.0014 36.7 4.1 38 219-256 403-447 (1227)
260 PRK03934 phosphatidylserine de 28.9 1.8E+02 0.0038 27.2 6.5 26 241-266 125-150 (265)
261 cd00291 SirA_YedF_YeeD SirA, Y 28.6 1.3E+02 0.0028 21.3 4.5 29 110-138 39-69 (69)
262 PRK06543 nicotinate-nucleotide 28.4 41 0.00089 32.0 2.2 20 221-240 69-88 (281)
263 PRK05742 nicotinate-nucleotide 28.2 43 0.00092 31.7 2.3 21 221-241 70-90 (277)
264 COG4942 Membrane-bound metallo 28.1 34 0.00075 34.4 1.7 41 201-241 332-393 (420)
265 PRK11649 putative peptidase; P 28.0 46 0.00099 33.5 2.6 20 221-240 365-384 (439)
266 COG0213 DeoA Thymidine phospho 27.2 1E+02 0.0022 31.3 4.7 20 257-276 380-399 (435)
267 cd01572 QPRTase Quinolinate ph 27.0 64 0.0014 30.2 3.2 25 252-276 56-80 (268)
268 PRK07428 nicotinate-nucleotide 26.5 48 0.001 31.6 2.3 20 221-240 76-95 (288)
269 PTZ00403 phosphatidylserine de 26.4 60 0.0013 31.9 3.0 73 201-276 249-339 (353)
270 PRK05848 nicotinate-nucleotide 25.9 49 0.0011 31.2 2.2 20 221-240 62-81 (273)
271 cd01568 QPRTase_NadC Quinolina 25.8 49 0.0011 30.8 2.2 21 221-241 61-81 (269)
272 PRK06978 nicotinate-nucleotide 25.5 50 0.0011 31.7 2.2 20 221-240 86-105 (294)
273 PLN02716 nicotinate-nucleotide 24.9 68 0.0015 31.0 3.0 20 221-240 82-101 (308)
274 PF01206 TusA: Sulfurtransfera 24.8 95 0.0021 22.3 3.2 28 111-138 41-70 (70)
275 cd01573 modD_like ModD; Quinol 24.7 53 0.0012 30.8 2.2 21 221-241 60-80 (272)
276 PF06572 DUF1131: Protein of u 24.6 87 0.0019 27.9 3.4 44 223-266 49-95 (171)
277 COG0688 Psd Phosphatidylserine 24.5 88 0.0019 29.0 3.6 68 199-274 123-202 (239)
278 PRK07896 nicotinate-nucleotide 24.4 55 0.0012 31.3 2.3 20 221-240 80-99 (289)
279 PRK09016 quinolinate phosphori 24.3 54 0.0012 31.5 2.2 20 221-240 89-108 (296)
280 PRK06106 nicotinate-nucleotide 24.1 56 0.0012 31.1 2.3 20 221-240 74-93 (281)
281 PF02666 PS_Dcarbxylase: Phosp 24.1 2E+02 0.0043 25.4 5.7 71 199-276 80-169 (202)
282 PRK08385 nicotinate-nucleotide 23.0 60 0.0013 30.7 2.3 20 221-240 62-81 (278)
283 TIGR03077 not_gcvH glycine cle 22.5 82 0.0018 25.8 2.7 27 250-276 27-54 (110)
284 COG0213 DeoA Thymidine phospho 22.5 77 0.0017 32.1 2.9 20 221-240 381-400 (435)
285 PLN02964 phosphatidylserine de 22.3 87 0.0019 33.2 3.4 33 201-241 555-587 (644)
286 COG0157 NadC Nicotinate-nucleo 22.1 90 0.002 29.9 3.2 23 254-276 64-86 (280)
287 cd03695 CysN_NodQ_II CysN_NodQ 21.8 2.5E+02 0.0053 21.1 5.1 60 207-273 18-80 (81)
288 TIGR01334 modD putative molybd 21.7 65 0.0014 30.5 2.2 20 221-240 64-83 (277)
289 COG0688 Psd Phosphatidylserine 21.7 1.1E+02 0.0024 28.3 3.7 60 201-273 174-234 (239)
290 TIGR00078 nadC nicotinate-nucl 21.5 68 0.0015 30.0 2.3 20 221-240 58-77 (265)
291 COG0739 NlpD Membrane proteins 20.7 1.6E+02 0.0034 26.2 4.4 35 237-275 199-233 (277)
292 COG0425 SirA Predicted redox p 20.2 1.5E+02 0.0033 22.6 3.6 35 105-139 43-77 (78)
No 1
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=100.00 E-value=5.4e-52 Score=380.03 Aligned_cols=266 Identities=64% Similarity=0.951 Sum_probs=213.1
Q ss_pred CCCCccCCCCCccccccccCccccceeccceeEEEecCCCCCceeeecCCCCCCceeeeEEeeceeeeeccCCCCCCCcc
Q 023761 1 MASSSLATGTPSASAFSKNSSSLVHYYRNGTVFFRLSSSKPKLRFFAKGSQPSWKCATVVKSQLNEVAFDGSSNASATPA 80 (277)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sn~~~~~~ 80 (277)
|||++.++.+.++ ++.+.. +++++.+|||+ +||+|||+.+|+++++..+|+||||+|||.++++||++++..
T Consensus 1 mas~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~a~~ne~~~~~~sn~~~~~~ 72 (274)
T PLN02983 1 MASLSVPCAKTAA--AAANVG-----SRLSRSSFRLQ-PKPNISFPSKGPNPKRSAVPKVKAQLNEVAVDGSSNSAKSDD 72 (274)
T ss_pred CCccccCccccee--eccccc-----ccccccccccC-CCCCcccccCCCCcccceeeeEEeeeceeeeccccccccccC
Confidence 7887766655543 222222 44558899999 999999999999999999999999999999999999998843
Q ss_pred -------ccccccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccc
Q 023761 81 -------AETKDAKQPNEPSPSILASEESISEFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAM 153 (277)
Q Consensus 81 -------~~~~~~~~~~~~~~~~~~~~~~~~~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~ 153 (277)
+++++.+.+++++++.++++++|++||.|+.+|+|++|++||.||+||+.||+|.|||+++.++++..+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di~e~~lk~~~~e~~irkkeal~~~~~~~~~~~ 152 (274)
T PLN02983 73 PKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQPPPPAPVVM 152 (274)
T ss_pred CcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccceeeeccccceEEEEecccccCCCCCCCceEE
Confidence 5677777888999999999999999999999999999999999999999999999999999877655555554
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecC
Q 023761 154 MHSPSPPPVMPPTQPAPAPTSSAPS-ASPAPPASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG 232 (277)
Q Consensus 154 ~~~~~~~~~~~~~~~~pa~~~~ap~-a~~~~~~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG 232 (277)
++.+.+...++.++ ++ +.+++. .....+.+.+.+.+.+...++...|+|||.|+||+.|.+++.|+|++||.|++|
T Consensus 153 ~~~~~~~~~~p~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~V~APmaGtf~r~p~pge~w~VkvGDsVkkG 229 (274)
T PLN02983 153 MQPPPPHAMPPASP--PA-AQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEPPFVKVGDKVQKG 229 (274)
T ss_pred ecCCCcccCCCCCC--cc-cCCCCCCCCCCCCCCCCCCCCCCCCcCCCCeEeCCcCeEEEeccCCCCcceeCCCCEecCC
Confidence 54433222222111 11 111111 001111112223344566777889999999999999999999999999999999
Q ss_pred CeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 233 QVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 233 qvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
|+||+||+||+.++|+|+++|+|.+|++++||.|.+|++|++|+|
T Consensus 230 QvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 230 QVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred CEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999987
No 2
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.97 E-value=7.7e-31 Score=225.22 Aligned_cols=156 Identities=42% Similarity=0.691 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761 105 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 184 (277)
Q Consensus 105 ~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~ 184 (277)
|++++|++||++|++++|+||+|+.+|++|+|+|........ ..+.. ..+ . ..+. +......+.. +
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~~-~~~~~--~~~--~-~~~~----~~~~~~~~~~----~ 66 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKS-AVQQA--AAP--V-PAQV----PAAPSAQAPA----P 66 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCccc-ccccc--CCC--c-cccC----CCCCCCCCCC----C
Confidence 578999999999999999999999999999999964311100 00000 000 0 0000 0000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761 185 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264 (277)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd 264 (277)
. .........+.+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|.+|++++|+
T Consensus 67 ~--~~~~~~~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~ 144 (156)
T TIGR00531 67 A--VCAPAPAKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ 144 (156)
T ss_pred C--CCCCCcccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC
Confidence 0 00000011122345799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 023761 265 PVSVDTPLFVIE 276 (277)
Q Consensus 265 ~V~~GqpL~~Ie 276 (277)
.|++|++||+|+
T Consensus 145 ~V~~Gq~L~~i~ 156 (156)
T TIGR00531 145 PVEYGQPLIVIE 156 (156)
T ss_pred EECCCCEEEEEC
Confidence 999999999985
No 3
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=1.8e-30 Score=222.70 Aligned_cols=155 Identities=45% Similarity=0.756 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761 105 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPP 184 (277)
Q Consensus 105 ~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~ 184 (277)
|++++|++||++|++++|+||+|+.+|++|+|+|............. ...+ ..+. ++.. ++... .+
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~~~~~~--~~~p----~~~~----~~~~-~~~~~---~~ 66 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAPVAQQA--AAAP----VAAA----PAAA-AAAAA---AP 66 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCcccccccc--ccCC----CCCC----CCCC-Ccccc---CC
Confidence 57899999999999999999999999999999986431100000000 0000 0000 0000 00000 00
Q ss_pred CCCCCCCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761 185 ASPPSSTAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264 (277)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd 264 (277)
. ..... .....+...|+|||+|+||++|+|+++|||++||.|++||+||+||+||++++|+|+++|+|.++++++|+
T Consensus 67 ~--~~~~~-~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~ 143 (155)
T PRK06302 67 A--AAPAA-AAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ 143 (155)
T ss_pred C--CCCCC-CccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC
Confidence 0 00000 11122345799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCeEEEEc
Q 023761 265 PVSVDTPLFVIE 276 (277)
Q Consensus 265 ~V~~GqpL~~Ie 276 (277)
.|++|++||+|+
T Consensus 144 ~V~~Gq~L~~i~ 155 (155)
T PRK06302 144 PVEFGQPLFVIE 155 (155)
T ss_pred EeCCCCEEEEeC
Confidence 999999999985
No 4
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.95 E-value=4.7e-27 Score=198.41 Aligned_cols=140 Identities=41% Similarity=0.627 Sum_probs=100.8
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCeEEEEEeccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023761 110 VSSLIKLVDSRDIVELQLKQLDCELIIRKKEALPQPPAPASMAMMHSPSPPPVMPPTQPAPAPTSSAPSASPAPPASPPS 189 (277)
Q Consensus 110 I~eLik~vd~s~I~ELelk~~~~~L~IrK~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~pa~~~~ap~a~~~~~~~~~~ 189 (277)
|++|+++++++++.+|+++.++.++++++.....+. ........... +. .....+.... + .
T Consensus 1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~-------~~~~~~~~~~----~----~ 61 (140)
T COG0511 1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAPIEASS---PS-------AAAAQPAASA----P----A 61 (140)
T ss_pred CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-ccccccccccc---cc-------ccccCccccc----c----c
Confidence 468999999999999999999999999887611000 00000000000 00 0000000000 0 0
Q ss_pred CCCCCCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCC
Q 023761 190 STAGKSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVD 269 (277)
Q Consensus 190 ~~~~~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~G 269 (277)
+......+...|+|||+|+||+ +||++||+|++||+||+||+|||+|+|.||.+|+|.+|++++||.|++|
T Consensus 62 --~~~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G 132 (140)
T COG0511 62 --PAPAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYG 132 (140)
T ss_pred --CCccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCC
Confidence 0000111456899999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcC
Q 023761 270 TPLFVIEP 277 (277)
Q Consensus 270 qpL~~Iep 277 (277)
|+|++|++
T Consensus 133 ~~L~~I~~ 140 (140)
T COG0511 133 DPLAVIEP 140 (140)
T ss_pred CEEEEecC
Confidence 99999985
No 5
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.69 E-value=9.8e-17 Score=120.16 Aligned_cols=68 Identities=21% Similarity=0.379 Sum_probs=66.3
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|++|+.|++.+ |+|++||.|++||+||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 599999999999 99999999999999999999999999999999999999999999999999999884
No 6
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.67 E-value=3.6e-17 Score=123.68 Aligned_cols=73 Identities=38% Similarity=0.510 Sum_probs=67.5
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|++|+.|.+++.. ....|+|++||.|++||+||.||+||+.++|+||++|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47889999877744 55669999999999999999999999999999999999999999999999999999987
No 7
>PRK07051 hypothetical protein; Validated
Probab=99.66 E-value=4.9e-16 Score=119.24 Aligned_cols=76 Identities=45% Similarity=0.823 Sum_probs=73.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+||+.|+|++++.+..+++|++||.|++||.||.||+||+.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.65 E-value=4.6e-16 Score=115.83 Aligned_cols=68 Identities=35% Similarity=0.513 Sum_probs=66.5
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|.||+.|+|++ |++++||+|++||+||.||+||+..+|.++.+|+|.++++++||.|..|++|++|+
T Consensus 3 ~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 689999999999 99999999999999999999999999999999999999999999999999999986
No 9
>PRK06748 hypothetical protein; Validated
Probab=99.63 E-value=1.1e-15 Score=119.22 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=66.1
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc-cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA-MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa-mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+|||.|++.+ |++++||.|++||.|+.||+ +|.+.+|.||.+|+|.+++++.||.|..|++|++|+
T Consensus 5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3699999999999 99999999999999999999 678889999999999999999999999999999986
No 10
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.62 E-value=3.5e-15 Score=125.27 Aligned_cols=71 Identities=37% Similarity=0.515 Sum_probs=68.2
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...|++||.|++.+ |+|++||.|++||.|++||+||+.++|.||++|+|.+|+++.||.|..|++|++|.
T Consensus 60 ~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 60 GADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 456899999999999 99999999999999999999999999999999999999999999999999999873
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.59 E-value=1.1e-14 Score=125.28 Aligned_cols=70 Identities=34% Similarity=0.573 Sum_probs=67.6
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+...|+||+.|+|.+ |+|++||.|++||.|++||+|||.++|.||.+|+|.++++++||.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 345799999999999 9999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.54 E-value=3.1e-14 Score=102.38 Aligned_cols=67 Identities=39% Similarity=0.630 Sum_probs=64.7
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|+||+.|+|.+ |+++.||.|++||.|+.|+++++..+|+||++|+|..+++++|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 478999999999 9999999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.44 E-value=3.2e-13 Score=137.32 Aligned_cols=71 Identities=30% Similarity=0.480 Sum_probs=68.1
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...|.|||+|++.+ |+|++||.|++||+|++||+|||.++|.||++|+|.++++++|+.|..|++|++|+
T Consensus 524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 334799999999999 99999999999999999999999999999999999999999999999999999986
No 14
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.37 E-value=1.3e-12 Score=132.95 Aligned_cols=73 Identities=38% Similarity=0.582 Sum_probs=70.1
Q ss_pred CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.+...|+||+.|+|.+ |+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.|+.|++|++|+|
T Consensus 520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 4456899999999999 999999999999999999999999999999999999999999999999999999987
No 15
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.35 E-value=2.2e-12 Score=119.30 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=61.7
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+.|..|++|+.|++
T Consensus 15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4799999 999999999999999999999999999999999999999999999999999999863
No 16
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.35 E-value=4.3e-12 Score=94.28 Aligned_cols=61 Identities=44% Similarity=0.664 Sum_probs=59.1
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|+++. |++++||.|++||.|+.||+||+..+|+||++|+|.+++++.|+.|..|++|++|
T Consensus 13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 588999 9999999999999999999999999999999999999999999999999999975
No 17
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.33 E-value=3.1e-12 Score=130.19 Aligned_cols=70 Identities=34% Similarity=0.607 Sum_probs=67.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|+|||.|+|++ |+|++||.|++||+||+||+||+.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus 524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 44799999999999 99999999999999999999999999999999999999999999999999999873
No 18
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.33 E-value=3.2e-12 Score=129.83 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=64.2
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 272 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL 272 (277)
+...|.|||+|++++ |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++||.|..|++|
T Consensus 516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 345799999999999 9999999999999999999999999999999999999999999999999976
No 19
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.32 E-value=2.9e-12 Score=128.33 Aligned_cols=72 Identities=35% Similarity=0.508 Sum_probs=69.0
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
....|.|||+|++.. +.|++|+.|.+||+|+++|+|||.+.|+||.+|+|.++.++.||.|..|++|++|++
T Consensus 574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 345799999999999 999999999999999999999999999999999999999999999999999999975
No 20
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.30 E-value=4.6e-12 Score=136.81 Aligned_cols=73 Identities=30% Similarity=0.505 Sum_probs=69.3
Q ss_pred CCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 197 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 197 ~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+...|.|||.|++.. |+|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|++|+.|+
T Consensus 1071 ~~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1071 PGNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred cccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 34456899999999999 99999999999999999999999999999999999999999999999999999985
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.30 E-value=6e-12 Score=136.60 Aligned_cols=73 Identities=32% Similarity=0.521 Sum_probs=69.8
Q ss_pred CCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 197 KSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 197 ~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+...|.|||.|+|++ |+|++||.|++||+||+||+|||.++|.||.+|+|.++++++||.|..||+|+.|+
T Consensus 1129 ~~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1129 PEGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 34567899999999999 99999999999999999999999999999999999999999999999999999985
No 22
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.30 E-value=4.9e-12 Score=125.29 Aligned_cols=63 Identities=29% Similarity=0.398 Sum_probs=61.0
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+|.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++||.|..|++|+.|+
T Consensus 104 ~eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 104 TDGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred ceEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 4689999 99999999999999999999999999999999999999999999999999999985
No 23
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.29 E-value=6.7e-12 Score=135.71 Aligned_cols=72 Identities=32% Similarity=0.502 Sum_probs=69.2
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
+...|.|||.|++.+ ++|++||.|++||+|++||+|||.++|.||.+|+|.+|++++|+.|+.|+.|+.|++
T Consensus 1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 345799999999999 999999999999999999999999999999999999999999999999999999985
No 24
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.26 E-value=1.3e-11 Score=121.05 Aligned_cols=63 Identities=41% Similarity=0.563 Sum_probs=61.0
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++||.|..|++|++|+
T Consensus 57 ~eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 57 SEGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred ceEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 3689999 99999999999999999999999999999999999999999999999999999986
No 25
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.23 E-value=1e-11 Score=128.25 Aligned_cols=76 Identities=36% Similarity=0.516 Sum_probs=71.8
Q ss_pred CCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 194 KSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 194 ~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
|++..+..+|.|||+|++.. ..|+.||+|++||+|++||+|||...|.||++|+|.+++|.+||.|+.|+.|+
T Consensus 1073 KAd~~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi 1145 (1149)
T COG1038 1073 KADPGNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLV 1145 (1149)
T ss_pred ccCCCCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEE
Confidence 45566777999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 023761 274 VIE 276 (277)
Q Consensus 274 ~Ie 276 (277)
.++
T Consensus 1146 ~~~ 1148 (1149)
T COG1038 1146 VVE 1148 (1149)
T ss_pred Ecc
Confidence 875
No 26
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.17 E-value=5.2e-11 Score=116.28 Aligned_cols=62 Identities=34% Similarity=0.493 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-|++.+ |++++||.|++||+|++||++|..++|.||++|+|.+|++++||.|..|++|++|.
T Consensus 16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 689999 99999999999999999999999999999999999999999999999999999985
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.17 E-value=6.4e-11 Score=115.73 Aligned_cols=63 Identities=33% Similarity=0.397 Sum_probs=61.0
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 15 ~eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 15 TEATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 3599999 99999999999999999999999999999999999999999999999999999986
No 28
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.09 E-value=2.4e-10 Score=111.60 Aligned_cols=62 Identities=27% Similarity=0.391 Sum_probs=60.6
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|++.+ |+|++||.|++||.||+||+||+.++|.|+++|+|.++++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 599999 99999999999999999999999999999999999999999999999999999986
No 29
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.04 E-value=4e-10 Score=114.76 Aligned_cols=63 Identities=29% Similarity=0.408 Sum_probs=60.9
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||.||.||+||+.++|.|+++|+|.+|++++|+.|..|++|++|+
T Consensus 148 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 148 TEGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred ceEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 4688999 99999999999999999999999999999999999999999999999999999985
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.04 E-value=3.7e-10 Score=115.72 Aligned_cols=64 Identities=28% Similarity=0.280 Sum_probs=60.9
Q ss_pred CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-..|++.+ |+|++||.|++||.||.||+||+.++|+||++|+|.+|++++|+.|..|++|+.|.
T Consensus 216 ~~eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 216 GDEVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ccceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 34688888 99999999999999999999999999999999999999999999999999999985
No 31
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.01 E-value=6.5e-10 Score=113.94 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=60.8
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||.|..|++|++|+
T Consensus 13 ~eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 13 DEVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred ceEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 4688989 99999999999999999999999999999999999999999999999999999986
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.97 E-value=1e-09 Score=110.92 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=61.6
Q ss_pred CccCCcc-----EEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 202 PLKCPMA-----GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 202 ~I~APm~-----G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|+-|.. |++.+ |+|++||.|++||.||+||+||+.++|+||++|+|.+++++.|+.|..|++|+.|.
T Consensus 118 ~~~~P~~g~~~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 118 EVTVPDIGDIEKVTVIE-------VLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred EEeCCCCCCcceeEEeE-------EeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 4555544 55666 99999999999999999999999999999999999999999999999999999985
No 33
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.96 E-value=1.1e-09 Score=111.98 Aligned_cols=77 Identities=27% Similarity=0.349 Sum_probs=71.6
Q ss_pred CCCCCCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 194 KSVKSSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 194 ~~~~~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
++.......|.+||+|++.. +.|++|++|+|||.||++.+|||.+-|.+|.+|+|.++.+.+|+.|+.|+.++
T Consensus 1100 kA~~~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~ 1172 (1176)
T KOG0369|consen 1100 KADPGVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIV 1172 (1176)
T ss_pred cCCCCCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEE
Confidence 33445566899999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEcC
Q 023761 274 VIEP 277 (277)
Q Consensus 274 ~Iep 277 (277)
.||+
T Consensus 1173 ~~E~ 1176 (1176)
T KOG0369|consen 1173 ELEH 1176 (1176)
T ss_pred EccC
Confidence 9985
No 34
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.94 E-value=1.8e-09 Score=108.95 Aligned_cols=62 Identities=35% Similarity=0.373 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|++.+ |+|++||.|++||.||.||+||+.++|+||++|+|.++++++|+.|..|++|+.|.
T Consensus 132 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 132 EVEVIE-------WLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eeEEeE-------EEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 466666 99999999999999999999999999999999999999999999999999999985
No 35
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.93 E-value=4.1e-10 Score=108.12 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=59.6
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
-|.+.. |..++||.|++++.||.||++|...+|.||.+|+|+++||++||.|+.|+.|+.|+|
T Consensus 86 eG~l~~-------~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 86 EGDLAQ-------WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred cchHHH-------HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 456656 999999999999999999999999999999999999999999999999999999975
No 36
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.92 E-value=6.9e-09 Score=73.25 Aligned_cols=64 Identities=34% Similarity=0.476 Sum_probs=60.9
Q ss_pred CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
++..|++.. |+++.|+.|..|+.++.++.+++...+.++.+|+|.+..+.+|+.+..|++|++|
T Consensus 11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 456799999 9999999999999999999999999999999999999999999999999999975
No 37
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.92 E-value=2.9e-09 Score=104.38 Aligned_cols=62 Identities=31% Similarity=0.363 Sum_probs=60.1
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-|++.+ |+|++||.|++||.||.||+||+.+++.++.+|+|.++++++|+.|..|++|++|+
T Consensus 12 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 12 ECELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 489999 99999999999999999999999999999999999999999999999999999885
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.88 E-value=4.8e-09 Score=106.04 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=63.0
Q ss_pred ccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 203 LKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 203 I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+..+..|++.+ |+|++||.|++||+||+||+||+.++|.++++|+|.+++++.|+.|..|++|++|+
T Consensus 8 lg~~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 8 IGDNEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCCCCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 33446799999 99999999999999999999999999999999999999999999999999999985
No 39
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.82 E-value=9.1e-09 Score=103.83 Aligned_cols=62 Identities=34% Similarity=0.331 Sum_probs=60.3
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|++.. |+|++||.|++||+||.||+||+.++|.++++|+|.+++++.|+.|..|++|+.|+
T Consensus 15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 589999 99999999999999999999999999999999999999999999999999999886
No 40
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.81 E-value=1.2e-08 Score=99.38 Aligned_cols=63 Identities=35% Similarity=0.485 Sum_probs=60.8
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||.||++|+.++|.||++|+|.++++++|+.|..|++|++|.
T Consensus 15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 4689999 99999999999999999999999999999999999999999999999999999985
No 41
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.77 E-value=1.5e-08 Score=99.90 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=60.6
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~-V~~GqpL~~Ie 276 (277)
..|++.+ |++++||.|++||.||.||++|+.++|.|+.+|+|.+++++.|+. |..|++|++|+
T Consensus 12 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 12 TTGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred ceEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 3689999 999999999999999999999999999999999999999999999 99999999984
No 42
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.76 E-value=6.2e-09 Score=103.81 Aligned_cols=69 Identities=29% Similarity=0.466 Sum_probs=66.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+.+||+|.+.. .+|+.||.|++||.||.+++|||.+.++||.+|+|..+.++.|+.|..|.+|++++
T Consensus 602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 4689999999999 99999999999999999999999999999999999999999999999999999875
No 43
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.76 E-value=1.6e-08 Score=102.18 Aligned_cols=61 Identities=30% Similarity=0.467 Sum_probs=58.8
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEE
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVI 275 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~I 275 (277)
.|++.+ |++++||.|++||.||.||++|..++|.++.+|+|.+|++++|+ .|..|++|++|
T Consensus 126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 589999 99999999999999999999999999999999999999999996 79999999987
No 44
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.67 E-value=4.4e-08 Score=97.47 Aligned_cols=62 Identities=35% Similarity=0.497 Sum_probs=59.3
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie 276 (277)
.|++.+ |+|++||.|++||.|+.||++|+.++|.|+.+|+|.+++++.|+ .|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 488999 99999999999999999999999999999999999999999995 799999999985
No 45
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.65 E-value=5e-08 Score=99.58 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=60.3
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||.||.||+||+.++|.++.+|+|.+++++.|+.|..|+.|+.|+
T Consensus 15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 4688999 99999999999999999999999999999999999999999999999999999874
No 46
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.59 E-value=5.7e-08 Score=95.81 Aligned_cols=67 Identities=31% Similarity=0.446 Sum_probs=61.7
Q ss_pred ccCCc-cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCC-CccCCCCeEEEEc
Q 023761 203 LKCPM-AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDR-KPVSVDTPLFVIE 276 (277)
Q Consensus 203 I~APm-~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~G-d~V~~GqpL~~Ie 276 (277)
+-.-| -|.|.+ |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|-
T Consensus 46 LSPTMeeGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 46 LSPTMEEGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCccccCCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 33344 599999 9999999999999999999999999999999999999999999 8899999999873
No 47
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.50 E-value=3.4e-07 Score=89.29 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=61.4
Q ss_pred CCccCCccEEEEecCCCCCCCc-ccCCCEEecCCeEEEEEcc--------------------------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAM-------------------------------------- 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~-VkvGd~V~kGqvL~~IEam-------------------------------------- 241 (277)
..|.+++.|.+.+ .+ +++||.|++||+|+.|+.-
T Consensus 124 ~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~ 196 (409)
T PRK09783 124 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD 196 (409)
T ss_pred EEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHH
Confidence 4799999999999 88 9999999999999999821
Q ss_pred ----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 242 ----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 242 ----------K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.....|+||++|+|.++.++.|+.|..|++||+|.
T Consensus 197 i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 197 IRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 12347999999999999999999999999999984
No 48
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.49 E-value=2.3e-07 Score=86.44 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=30.5
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|+||++|+|..+.++.|+.|..|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 468999999999999999999999999999854
No 49
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.45 E-value=4.3e-07 Score=75.86 Aligned_cols=55 Identities=33% Similarity=0.558 Sum_probs=49.7
Q ss_pred ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~I---lVe~Gd~V~---~Gq-pL~~Iep 277 (277)
.++|++|++||.+|.||++|...+|.||++|+|+++ +.++.+.+. ||+ .|++|++
T Consensus 45 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 45 PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 468999999999999999999999999999999999 677778888 876 9999874
No 50
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.40 E-value=4.5e-07 Score=85.75 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
+...|.+++.|++.. .+|++||.|++||+|+.|+.
T Consensus 47 ~~v~v~~~v~G~V~~-------v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 47 DVVHVASEVGGRIVE-------LAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eeEEEcccCceEEEE-------EEeCCCCEEcCCCEEEEECc
Confidence 456899999999999 99999999999999999976
No 51
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.30 E-value=8.9e-07 Score=81.08 Aligned_cols=69 Identities=30% Similarity=0.356 Sum_probs=61.2
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-------------------------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------- 243 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------- 243 (277)
..|.+|..|++.. ++|++||.|++||+|+.|+...+
T Consensus 27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4799999999999 99999999999999999964211
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 236899999999999999999999999999874
No 52
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=98.28 E-value=1.5e-06 Score=81.75 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=61.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce------------------------------------
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------ 243 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------ 243 (277)
...|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 47 ~v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~ai 119 (310)
T PRK10559 47 VVAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAM 119 (310)
T ss_pred EEEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 45799999999999 99999999999999999975210
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|+||++|+|.++.++.|+.|..|++|+.|-
T Consensus 120 S~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 120 SREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 246789999999999999999999999999863
No 53
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=98.22 E-value=1.5e-06 Score=84.21 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+||++|+|..+.++.|+.|..|++||.|-
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 36999999999999999999999999999985
No 54
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=98.21 E-value=2.3e-06 Score=82.21 Aligned_cols=70 Identities=24% Similarity=0.346 Sum_probs=60.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce------------------------------------
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------ 243 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------ 243 (277)
...|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 63 ~~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~ 135 (385)
T PRK09578 63 QAEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRA 135 (385)
T ss_pred EEEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45799999999999 99999999999999999975311
Q ss_pred -----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761 244 -----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 276 (277)
Q Consensus 244 -----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie 276 (277)
...|+||++|+|.+++++.|+.|..| ++|+.|.
T Consensus 136 iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 136 VSERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 24688999999999999999999885 5898873
No 55
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=98.18 E-value=3e-06 Score=79.62 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=29.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+||++|+|..+.++.|+.|..|++|+.|.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~ 235 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS 235 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence 46889999999999999999999999999885
No 56
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=98.17 E-value=3.2e-06 Score=81.79 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=60.0
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 243 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~----------------------------------- 243 (277)
....|.+.+.|++.. ++|++||.|++||+|+.|+...+
T Consensus 64 ~~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g 136 (397)
T PRK15030 64 RIAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQ 136 (397)
T ss_pred EEEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345799999999999 99999999999999999974211
Q ss_pred ------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--EEEE
Q 023761 244 ------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP--LFVI 275 (277)
Q Consensus 244 ------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp--L~~I 275 (277)
...|+||++|+|.++.++.|+.|..|++ |+.|
T Consensus 137 ~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 137 YISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 2457899999999999999999999985 7766
No 57
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.13 E-value=4.1e-06 Score=66.20 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=47.6
Q ss_pred cCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761 204 KCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265 (277)
Q Consensus 204 ~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~ 265 (277)
...+.|.+..- ++.++|+.|++||.||.||++|...+|.||.+|+|.+++.+.++.
T Consensus 24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 34467776661 467779999999999999999999999999999999999887764
No 58
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=98.13 E-value=3.8e-06 Score=80.76 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc-------------------------------------
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------- 242 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK------------------------------------- 242 (277)
...|.+++.|++.+ ++|++||.|++||+|+.|+...
T Consensus 61 ~~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~ 133 (385)
T PRK09859 61 VAEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNY 133 (385)
T ss_pred EEEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34799999999999 9999999999999999997420
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 023761 243 ----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 275 (277)
Q Consensus 243 ----------------------------------~~~eI~Ap~sG~V~~IlVe~Gd~V~~Gq--pL~~I 275 (277)
-...|+||++|+|.+++++.|+.|..|+ +|+.|
T Consensus 134 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 134 VSRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1247899999999999999999999985 68876
No 59
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.12 E-value=3.6e-06 Score=92.01 Aligned_cols=71 Identities=24% Similarity=0.416 Sum_probs=65.9
Q ss_pred CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+...+++|.+|++.+ +.|+.|+.|.+||.-++||.|||.+++.+..+|+|. ...++|+.+++|+.|+.+.
T Consensus 683 nDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 683 NDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCCccCccceeEEee
Confidence 3455899999999999 999999999999999999999999999999999776 7889999999999999874
No 60
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=98.09 E-value=1.3e-05 Score=74.52 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=59.1
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
...|+||..|.|.. +++.||.|+|||+|+.|+. .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus 164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence 35899999999987 8999999999999999985 799999999776 66789999999999999976
No 61
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.03 E-value=7.2e-06 Score=67.25 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=43.6
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---cc---CCCC-eEEEEc
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVDT-PLFVIE 276 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V---~~Gq-pL~~Ie 276 (277)
+-++|+.|++||.||.||++|...+|.||++|+|++++.+..+ .+ .||+ -|++|+
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~P~lln~~py~~gWl~~v~ 98 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDDTQPINHSPESEGWFVVVQ 98 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence 3478999999999999999999999999999999999654443 33 2433 566654
No 62
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=98.02 E-value=2.7e-06 Score=81.97 Aligned_cols=56 Identities=29% Similarity=0.380 Sum_probs=54.8
Q ss_pred CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|||++||.|.+-|.||+++.+|...+|.+-++|+|.+|.-+.+|....|++|..++
T Consensus 84 WfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 84 WFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred ehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999875
No 63
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=98.01 E-value=9.6e-06 Score=67.83 Aligned_cols=49 Identities=33% Similarity=0.430 Sum_probs=41.5
Q ss_pred CCCCCCcc---cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761 216 APGEPPFV---KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264 (277)
Q Consensus 216 ~p~~~~~V---kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd 264 (277)
..+.-.|| ++|++|++||.+|.||+||...+|.||++|+|++++-..-+
T Consensus 34 ~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 34 ELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 34444555 58999999999999999999999999999999998865544
No 64
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.99 E-value=1.1e-05 Score=77.13 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|.+++.|.+.. ++|++||.|++||+|+.|+.
T Consensus 61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECc
Confidence 34799999999999 99999999999999999986
No 65
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.96 E-value=1.1e-05 Score=78.77 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=60.1
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc------------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK------------------------------------ 242 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK------------------------------------ 242 (277)
+...|.+++.|++.. +++++||.|++||+|+.|+...
T Consensus 86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g 158 (415)
T PRK11556 86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN 158 (415)
T ss_pred eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456899999999999 9999999999999999996421
Q ss_pred -----------------------------------eeeEEecCCCeEEEEEecCCCCccCCCC--eEEEE
Q 023761 243 -----------------------------------LMNEIEADRSGTIVEIIAEDRKPVSVDT--PLFVI 275 (277)
Q Consensus 243 -----------------------------------~~~eI~Ap~sG~V~~IlVe~Gd~V~~Gq--pL~~I 275 (277)
-...|+||++|+|..+.++.|+.|..|+ +|+.|
T Consensus 159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 0236899999999999999999999984 67765
No 66
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.96 E-value=6.8e-06 Score=70.25 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=49.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd 264 (277)
.......+.|.+.. +-+ ++|++|++||.++.||+||+..+|.||++|+|++++.+-.+
T Consensus 35 itd~aq~~lG~I~~-------v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 35 ITDYAQTMAGDVVF-------VRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred cCHHHHHhcCCEEE-------EEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 34566678888877 555 48999999999999999999999999999999999987554
No 67
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.88 E-value=2.3e-05 Score=64.63 Aligned_cols=55 Identities=27% Similarity=0.463 Sum_probs=43.1
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe---cCCCCcc---CCCC-eEEEEc
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII---AEDRKPV---SVDT-PLFVIE 276 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il---Ve~Gd~V---~~Gq-pL~~Ie 276 (277)
+-++|+.|++||.||.||++|...+|.||++|+|.+++ .++-+.+ .||+ -|++|+
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~P~lln~dpy~~gWl~~v~ 100 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALEDDIQPINNAPESEGWFVVVQ 100 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhChHhhcCCCCCCceEEEEE
Confidence 34789999999999999999999999999999999994 4443443 2333 555554
No 68
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.83 E-value=1.1e-05 Score=74.03 Aligned_cols=33 Identities=36% Similarity=0.584 Sum_probs=23.9
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|.++..|++ . ++|++||+|++||+|+.|+.
T Consensus 21 ~~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 21 EVSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp EEEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-
T ss_pred EEEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEEC
Confidence 357999999999 9 99999999999999999964
No 69
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.82 E-value=4.1e-05 Score=71.51 Aligned_cols=35 Identities=31% Similarity=0.505 Sum_probs=31.7
Q ss_pred CCCccCCcc---EEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMA---GTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~---G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|.++.. |++.+ ++|++||.|++||+|+.|+..
T Consensus 13 ~~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 13 VVAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred eEEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence 447899999 99999 999999999999999999863
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.75 E-value=2.7e-05 Score=54.90 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=33.2
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcccee
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM 244 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~ 244 (277)
..|.+|+.|++.. ++|++||.|++||+|+.|+...+.
T Consensus 3 ~~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 3 VTIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence 3689999999999 999999999999999999876544
No 71
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.74 E-value=5.8e-05 Score=53.18 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|.++++|+|.+++|++|+.|..|++|++|..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 568999999999999999999999999999863
No 72
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.55 E-value=0.00033 Score=65.98 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc---cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA---MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa---mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
...|+||..|.|+. .++.||.|++||+|+.|=. .....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 45899999999987 7999999999999998855 3457789999999997654 66889999999987
No 73
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.54 E-value=0.0002 Score=68.17 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|.++..|++.. ++|++||.|++||+|+.|+.
T Consensus 43 ~~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 43 VKVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred eeecccCCCcEEEE-------EEeCCCCEecCCCeEEEEcc
Confidence 34688999999999 99999999999999999853
No 74
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.40 E-value=0.00069 Score=63.27 Aligned_cols=65 Identities=29% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam--K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
..|+||..|.|+. .++.||.|++||+|+.|-.. ....+|+||.+|+|..+ ...-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~--~~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGR--NNLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEe--cCCCccCCCCEEEEe
Confidence 4799999999986 89999999999999999652 23478999999999544 466778999999876
No 75
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.39 E-value=0.00071 Score=64.08 Aligned_cols=66 Identities=27% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+||..|.|+. +++.||.|++||+|+.|-.. ....+|+||.+|+|.-+. ..-.|..|+.|+.|-
T Consensus 245 ~~v~A~~~G~~~~--------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLFEP--------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEEEE--------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 5799999999986 89999999999999998653 456789999999997554 446688999998874
No 76
>PRK12784 hypothetical protein; Provisional
Probab=97.36 E-value=0.00073 Score=52.54 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=63.2
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL-MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~-~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|.||.-|++.. +||.+++.|-+=+.|+.|+.|.- +..|.-.++|.|.-+.|+.||.|..+..|+.++
T Consensus 7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 689999999999 99999999999999999999874 455788999999999999999999999999986
No 77
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.31 E-value=0.00071 Score=65.46 Aligned_cols=66 Identities=27% Similarity=0.242 Sum_probs=53.9
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
...|+||..|.|+. .++.||.|++||+|+.|-.- ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 289 ~~~v~Ap~~Gl~~~--------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~I 358 (359)
T cd06250 289 VEMLYAPAGGMVVY--------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAKI 358 (359)
T ss_pred cEEEeCCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEEe
Confidence 45799999999986 89999999999999988441 223336999999986544 77889999999987
No 78
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.27 E-value=0.0011 Score=63.55 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
..|+||..|.|+. .++.||.|++||+|+.|=.. ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~~--------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIEF--------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEEE--------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 4799999999986 89999999999999988552 356789999999997754 66789999999876
No 79
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.24 E-value=0.00043 Score=51.59 Aligned_cols=33 Identities=12% Similarity=0.426 Sum_probs=30.5
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+..|+||++|+|.+++++.||.|+.||+|+.++
T Consensus 2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 346999999999999999999999999999886
No 80
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=97.17 E-value=0.0011 Score=53.59 Aligned_cols=40 Identities=45% Similarity=0.612 Sum_probs=35.3
Q ss_pred CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 260 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV 260 (277)
.+.|++||+|++||.|+..+. -+...|.|+++|+|.+|.-
T Consensus 43 ~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 43 EPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred eEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 389999999999999999875 5678999999999998763
No 81
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.13 E-value=0.00093 Score=55.40 Aligned_cols=41 Identities=34% Similarity=0.515 Sum_probs=33.4
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCC
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAED 262 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~ 262 (277)
+-++|++|++|+.++.||+.|...++.+|++|+|++++-+-
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l 78 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEEL 78 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHH
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccc
Confidence 45789999999999999999999999999999999997543
No 82
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=97.09 E-value=0.00067 Score=65.81 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=30.1
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
...|+||++|+|.++.+..|+.|..|++||.+-|
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 3447799999999999999999999999998754
No 83
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00071 Score=57.27 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=38.9
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK 264 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd 264 (277)
+-++|+.|++|+.+|.||+.|...+|.||++|+|++++-+.-+
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~ 88 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD 88 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence 5689999999999999999999999999999999999855443
No 84
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.01 E-value=0.0019 Score=60.26 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=51.5
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc--cceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA--MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa--mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
....++||..|.|+. +++.||.|++||+|+.|=. .....+|+||++|+|.-+. ..-.|..|+.|+
T Consensus 222 ~~~~v~Ap~~G~~~~--------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLWYP--------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence 345899999999986 8899999999999998843 3456789999999997655 345666777653
No 85
>PRK06748 hypothetical protein; Validated
Probab=96.82 E-value=0.0022 Score=50.26 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..-|+||..|+|.++++++||.|+.||+|+.|+
T Consensus 4 ~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE 36 (83)
T PRK06748 4 IEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE 36 (83)
T ss_pred eeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence 456899999999999999999999999999987
No 86
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.81 E-value=0.0019 Score=47.70 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|..|.||..|+|.+++++.||.|+.|++|+.|+
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457899999999999999999999999999986
No 87
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.54 E-value=0.0031 Score=44.74 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=28.6
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|+||++|+|.+++++.|+.|+.|++|+.|+
T Consensus 2 v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~ 31 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31 (67)
T ss_pred ccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 789999999999999999999999999986
No 88
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.36 E-value=0.0098 Score=57.41 Aligned_cols=65 Identities=29% Similarity=0.330 Sum_probs=50.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc---ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM---KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam---K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
...|+||-.|.|.- .|+.||.|++||+|+.|-.+ +...+|+|+++|+|..+. ---.|+.|+.|+.
T Consensus 256 ~~~i~Ap~~G~v~~--------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~ 323 (331)
T COG3608 256 DEMIRAPAGGLVEF--------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKV 323 (331)
T ss_pred cceeecCCCceEEE--------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeee
Confidence 34699999998865 89999999999999998765 678899999999998764 2233444444443
No 89
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.17 E-value=0.016 Score=54.45 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=43.1
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc--ceeeEEecCCCeEEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM--KLMNEIEADRSGTIVEI 258 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam--K~~~eI~Ap~sG~V~~I 258 (277)
...|+||..|.|+. .++.|+.|++||+|+.|-.. ....+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~Gi~~~--------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFEP--------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 45899999999986 79999999999999998542 23567899999999876
No 90
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.97 E-value=0.0088 Score=50.70 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=31.7
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-...|+||..|++.+++|+.||.|..||.|+.||
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 4567999999999999999999999999999986
No 91
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.88 E-value=0.012 Score=49.71 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||.+|+|.+|++++||.|+.||+|+.|+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE 93 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE 93 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 456899999999999999999999999999986
No 92
>PRK07051 hypothetical protein; Validated
Probab=95.87 E-value=0.0093 Score=45.59 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=30.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
..|++|..|++.+ +++++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence 4699999999999 9999999999999999986
No 93
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=95.83 E-value=0.021 Score=50.28 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=50.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV-------------------- 256 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~-------------------- 256 (277)
..|.||+.|++.. +-++-|.|=. |+-++++-. ...|.||++|+|.
T Consensus 21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL 89 (169)
T PRK09439 21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELF 89 (169)
T ss_pred eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence 4689999999987 5666776655 777776543 3678889888887
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 023761 257 ---------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ---------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.+++.||.|..||+|+++.
T Consensus 90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 56788999999999999874
No 94
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.68 E-value=0.019 Score=54.47 Aligned_cols=40 Identities=28% Similarity=0.485 Sum_probs=35.2
Q ss_pred EEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 236 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 236 ~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
+.|++. ...|.++++|+|.+++|++||.|..||+|++|.+
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 556653 6789999999999999999999999999999864
No 95
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.66 E-value=0.013 Score=44.02 Aligned_cols=32 Identities=34% Similarity=0.472 Sum_probs=27.4
Q ss_pred eEEecCCCeEEEE------EecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVE------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~------IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+|++|.-|...+ +++++||.|..||+|+.|+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie 38 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE 38 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence 3678888876555 9999999999999999986
No 96
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=95.64 E-value=0.038 Score=46.31 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+++++.||.|..||+|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 56788999999999999863
No 97
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=95.55 E-value=0.037 Score=46.20 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=17.5
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+++++.||.|..||+|+++.
T Consensus 83 ~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 83 TSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 67789999999999999874
No 98
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.51 E-value=0.018 Score=49.79 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence 56899999999999999999999999999886
No 99
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.44 E-value=0.019 Score=53.50 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=32.1
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
-...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 36779999999999999999999999999999864
No 100
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.43 E-value=0.044 Score=50.43 Aligned_cols=66 Identities=27% Similarity=0.351 Sum_probs=53.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeE--EEEEcc--ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVL--CIIEAM--KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL--~~IEam--K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+.||..|.|+. .++.||.|++||+| +.+-.. ....+|+||.+|+|. .....-.|..|+.|+.|.
T Consensus 221 ~~~~a~~~G~~~~--------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v~ 290 (292)
T PF04952_consen 221 EWVRAPAGGLFEP--------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKVA 290 (292)
T ss_dssp CEEESSSSEEEEE--------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEEE
T ss_pred eeecCCccEEEEE--------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEEe
Confidence 4799999999986 89999999999999 655332 344689999999995 455888899999998863
No 101
>PF13437 HlyD_3: HlyD family secretion protein
Probab=95.31 E-value=0.028 Score=43.87 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=30.3
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
.|+||+.|++.. ++++.|+.|.+|+.||.|..+
T Consensus 1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence 489999999999 899999999999999998764
No 102
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=95.25 E-value=0.012 Score=53.48 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=23.4
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
.|.++..|++.. ++|++||.|++||+|+.|+..
T Consensus 3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~~ 35 (305)
T PF00529_consen 3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDPT 35 (305)
T ss_dssp EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--H
T ss_pred EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEee
Confidence 578899999999 999999999999999999864
No 103
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.22 E-value=0.035 Score=54.92 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=35.2
Q ss_pred EEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 237 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 237 ~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.|....-...|.++..|+|.+|+|++||.|..||+|++|.+
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 44444556789999999999999999999999999999864
No 104
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=95.15 E-value=0.044 Score=46.36 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=46.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEE----ecCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV----QKGQVLCIIEAMKLMNEIEADRSGTIV-------------------- 256 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V----~kGqvL~~IEamK~~~eI~Ap~sG~V~-------------------- 256 (277)
..|.||+.|++.. +-++-|.| --|+-++++=.. ..|.||++|+|.
T Consensus 3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL 71 (132)
T PF00358_consen 3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL 71 (132)
T ss_dssp EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence 3689999999987 44555555 236777776443 468899999887
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 023761 257 ---------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ---------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.+++.||.|..||+|+++.
T Consensus 72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 67788899999999999863
No 105
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=95.08 E-value=0.035 Score=53.51 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=42.5
Q ss_pred ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
++.|+....-+..+.|+... ...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus 41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 34444444445667777554 5679999999999999999999999999999974
No 106
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.05 E-value=0.036 Score=52.82 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=36.2
Q ss_pred EEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 236 CIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 236 ~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.|....-...|.++.+|+|.+++|++||.|..|++|+.+.
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 45556677777899999999999999999999999999986
No 107
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.01 E-value=0.025 Score=56.65 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=34.0
Q ss_pred CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA 260 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV 260 (277)
+.|++||+|++||.|+.-+.. ....+.||++|+|++|..
T Consensus 43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 889999999999999986533 578899999999999954
No 108
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.98 E-value=0.033 Score=54.15 Aligned_cols=34 Identities=21% Similarity=0.367 Sum_probs=32.1
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
...|.++++|+|.+++|++||.|..||+|++|.+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 7789999999999999999999999999999974
No 109
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.95 E-value=0.042 Score=52.89 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=41.0
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
+.|+.-..-...+.|+.. ....|.++++|+|.+++++.||.|..||+|++|.+
T Consensus 44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 334333333455677764 45689999999999999999999999999999964
No 110
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.95 E-value=0.042 Score=53.90 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.9
Q ss_pred ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
++.|+.-.--+..+.|++. -...|.++++|+|.++++++|+.|..||+|++|.+
T Consensus 67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 3444433333456777764 55779999999999999999999999999999964
No 111
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=94.94 E-value=0.029 Score=52.45 Aligned_cols=37 Identities=38% Similarity=0.364 Sum_probs=31.2
Q ss_pred CcccCCCEEecCCeEEEEEcccee--eEEecCCCeEEEEEec
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLM--NEIEADRSGTIVEIIA 260 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~--~eI~Ap~sG~V~~IlV 260 (277)
..|++||+|++||.|++ +|.. .-+.||++|+|.+|..
T Consensus 43 m~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R 81 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR 81 (257)
T ss_pred EEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence 78999999999999997 4443 4467999999999875
No 112
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.92 E-value=0.049 Score=52.12 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=35.5
Q ss_pred eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.-+.|+.. -...|.++.+|.|.++++++||.|..||+|+.|.+
T Consensus 52 ~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEee-eEEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 34455544 34578999999999999999999999999999864
No 113
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=94.86 E-value=0.032 Score=61.59 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=57.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...+...+.|..+. +.|+.|+.+..++.....+.. -...|.||..|+|.+++++.||.|..||+|+.|+
T Consensus 1038 ~r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~~-~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1038 EREVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADPG-NPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred cEEEEEEECCeEEE-------EEecCcccccccccccccccc-cCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 35778889999888 889999888888766554432 3356999999999999999999999999999986
No 114
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.84 E-value=0.057 Score=50.78 Aligned_cols=42 Identities=7% Similarity=0.138 Sum_probs=35.1
Q ss_pred eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
+-+.|+. -...|.++++|+|.++++++||.|..||+|++|.+
T Consensus 35 v~G~v~~--~~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 35 LYGNVDI--RTVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEEEee--EEEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3444553 35689999999999999999999999999999863
No 115
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.73 E-value=0.041 Score=47.71 Aligned_cols=40 Identities=38% Similarity=0.525 Sum_probs=30.1
Q ss_pred CcccCCCEEecCCeEEEEEcccee-eEEecCCCeEEEEEec
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEIIA 260 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~-~eI~Ap~sG~V~~IlV 260 (277)
+.+.+|+.|.+||.|+.|.+.|-. .-++||++|+|.-+.-
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 789999999999999999999965 4589999999987664
No 116
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.68 E-value=0.058 Score=52.64 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=32.3
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 242 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 242 K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.-...|.++.+|+|.+++|++||.|..|++|++|.+
T Consensus 56 ~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 56 SGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred CceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 345589999999999999999999999999999863
No 117
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.62 E-value=0.059 Score=52.33 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=36.3
Q ss_pred eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..+.|++ .-...|.+.++|+|.+++++.||.|..||+|++|.+
T Consensus 56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 3345554 346779999999999999999999999999999974
No 118
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=94.48 E-value=0.038 Score=54.73 Aligned_cols=39 Identities=44% Similarity=0.561 Sum_probs=34.2
Q ss_pred CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 259 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il 259 (277)
.+.|++||+|++||.|+..+ ......|.||++|+|++|.
T Consensus 44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 38899999999999999873 3467899999999999986
No 119
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=94.47 E-value=0.044 Score=54.83 Aligned_cols=38 Identities=37% Similarity=0.324 Sum_probs=33.0
Q ss_pred CcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 259 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il 259 (277)
+.|++||+|++||.|+.-+.. ....+.||++|+|++|.
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 789999999999999965433 56889999999999995
No 120
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=94.47 E-value=0.077 Score=46.28 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.7
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.++++||.|..||+|+++.
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EEEeeCCCEEccCCEEEEEC
Confidence 67899999999999999863
No 121
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=94.22 E-value=0.065 Score=50.58 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|.++++|.|.++++++||.|..||+|++|.+
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999864
No 122
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=94.06 E-value=0.068 Score=47.94 Aligned_cols=32 Identities=19% Similarity=0.182 Sum_probs=29.7
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+||++|+|..+.+..|+.|..|++|+.|-
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 36899999999999999999999999999874
No 123
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=94.06 E-value=0.035 Score=48.74 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=38.7
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~ 265 (277)
++|..|.+|+.++.+|.-|...+|.+|++|+|++|+-+-++.
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En 130 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN 130 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence 789999999999999999999999999999999998766553
No 124
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.95 E-value=0.047 Score=53.25 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=31.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|.++..|++.. .+|++||.|++||+|+.|+.
T Consensus 58 ~~~v~a~~~G~V~~-------i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 58 VDTIQSPGSGVVID-------LDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred eeEEECCCCeEEEE-------EECCCcCEECCCCEEEEECc
Confidence 45899999999999 99999999999999999864
No 125
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=93.92 E-value=0.075 Score=51.75 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.3
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
...|-+.++|.|++++|++++.|..|++||+|.|
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 4567899999999999999999999999999976
No 126
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=93.58 E-value=0.078 Score=55.82 Aligned_cols=39 Identities=44% Similarity=0.479 Sum_probs=33.3
Q ss_pred CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 259 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il 259 (277)
.+.|++||+|.+||.|+.-+ .-....|.||++|+|+.|.
T Consensus 50 ~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 50 ELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred cceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 38999999999999999653 3356899999999999985
No 127
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=93.36 E-value=0.063 Score=54.59 Aligned_cols=38 Identities=45% Similarity=0.515 Sum_probs=34.9
Q ss_pred CCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII 259 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il 259 (277)
.++|++||+|.+||.|..=+. .+..+.||.+|+|.+|.
T Consensus 46 ~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 46 ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 378999999999999998775 89999999999999998
No 128
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=92.94 E-value=0.26 Score=51.61 Aligned_cols=66 Identities=21% Similarity=0.378 Sum_probs=49.1
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE-------------------
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV------------------- 256 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~------------------- 256 (277)
...|.||+.|++.. .-++-|.|=. |+-++++=.. ..|.||++|+|.
T Consensus 498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei 566 (648)
T PRK10255 498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI 566 (648)
T ss_pred ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence 34699999999987 4455554443 6666665443 578888888887
Q ss_pred ----------------EEecCCCCccCCCCeEEEEc
Q 023761 257 ----------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ----------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.+|++||.|..||+|+++.
T Consensus 567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 45688999999999999864
No 129
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=92.87 E-value=0.22 Score=51.94 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=50.8
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE---------------------
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------- 256 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~--------------------- 256 (277)
.|.||+.|++.. .-++.|.|=. ||-++++=. ...|.||++|+|.
T Consensus 480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~---~~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi 548 (627)
T PRK09824 480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPS---VGEVRSPVAGRVASLFATLHAIGLESDDGVEVLI 548 (627)
T ss_pred hcccccceEEee--------HHHCCCccccccccCCceEecCC---CCeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence 599999999987 6677777766 666666433 3588899999887
Q ss_pred --------------EEecCCCCccCCCCeEEEEc
Q 023761 257 --------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 --------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.++++||.|..||+|+++.
T Consensus 549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 56788999999999999874
No 130
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.72 E-value=0.15 Score=50.00 Aligned_cols=39 Identities=36% Similarity=0.315 Sum_probs=31.7
Q ss_pred CcccCCCEEecCCeEEEEEccce--eeEEecCCCeEEEEEecCC
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKL--MNEIEADRSGTIVEIIAED 262 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~--~~eI~Ap~sG~V~~IlVe~ 262 (277)
..|++||.|++||+|++ +|. -.-+.||++|+|++|+.-+
T Consensus 43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 67999999999999986 343 3457899999999988433
No 131
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.67 E-value=0.25 Score=44.68 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 232 GqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
-...+.++. .....|.+...|.|.++++++||.|..|++|+.+.+
T Consensus 55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 344455555 334478888999999999999999999999999863
No 132
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=92.67 E-value=0.2 Score=49.15 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=35.7
Q ss_pred eEEEEEccc-eeeEEecCCCeEEEEEe-cCCCCccCCCCeEEEEc
Q 023761 234 VLCIIEAMK-LMNEIEADRSGTIVEII-AEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 234 vL~~IEamK-~~~eI~Ap~sG~V~~Il-Ve~Gd~V~~GqpL~~Ie 276 (277)
..+.|+... ....|.+.++|.|.+++ +..||.|..||+|++|.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 345666433 45679999999999998 99999999999999986
No 133
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=92.58 E-value=0.28 Score=50.90 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=48.7
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEE---------------------
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIV--------------------- 256 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~--------------------- 256 (277)
.|.||+.|++.. .-++-|.|=. ||-+++.-. ...|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili 532 (610)
T TIGR01995 464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI 532 (610)
T ss_pred eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence 589999999987 5566666655 666665432 3578888888776
Q ss_pred --------------EEecCCCCccCCCCeEEEEc
Q 023761 257 --------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 --------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.++++||.|..||+|+++.
T Consensus 533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 57789999999999999874
No 134
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=92.50 E-value=0.21 Score=44.77 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
++++|+.+++||.++.++-. -...+.-|.+ .++.++.||.|..|+.++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 67899999999999999977 3455555655 378999999999998654
No 135
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=92.23 E-value=0.25 Score=43.79 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=39.2
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
++++|+.|++||.++.++-. -...+.-|.+ .++.++.|+.|..|+.|+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 67899999999999999976 4444555655 368899999999999775
No 136
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=92.06 E-value=0.13 Score=44.47 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=30.7
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
...|.|+..|++.+ ++++.||.|..||.|+.|+
T Consensus 124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence 45799999999999 9999999999999999985
No 137
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.80 E-value=0.19 Score=52.10 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=30.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+|.||..|+|.+++|+.||.|+.||+|+.||
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 36999999999999999999999999999986
No 138
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.73 E-value=0.12 Score=51.14 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=30.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|.++..|.+.. ++|++||.|++||+|+.|+.
T Consensus 60 ~~vq~~~~G~v~~-------i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 60 SKIQSTSNNAIKE-------NYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEEcCCCcEEEE-------EEcCCCCEecCCCEEEEECc
Confidence 4799999999999 99999999999999999864
No 139
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.71 E-value=0.16 Score=43.81 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
...|.||..|++.. ++++.|+.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence 45899999999999 9999999999999999885
No 140
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=91.60 E-value=0.19 Score=46.52 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=32.1
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
..|.||..|++.. +.+++||.|..||+|+.|+...
T Consensus 46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence 4799999999999 9999999999999999998653
No 141
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=90.79 E-value=0.29 Score=46.17 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=28.0
Q ss_pred EecCCCeEEEE-------EecCCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVE-------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~-------IlVe~Gd~V~~GqpL~~Ie 276 (277)
|.||..|+|.+ ++++.||.|+.||.|+.||
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE 236 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE 236 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence 78999999999 5999999999999999986
No 142
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=90.54 E-value=0.26 Score=36.14 Aligned_cols=31 Identities=29% Similarity=0.460 Sum_probs=28.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
..|+||..|++.+ ++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence 4699999999999 999999999999999875
No 143
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=90.41 E-value=0.31 Score=50.48 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=30.8
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE 556 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 447999999999999999999999999999986
No 144
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=90.22 E-value=0.34 Score=50.13 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.++++++||.|..||+|+.|+
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 145
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=90.11 E-value=0.7 Score=48.02 Aligned_cols=75 Identities=23% Similarity=0.360 Sum_probs=47.7
Q ss_pred CCccCCccEEEEecCCCC----------------------------CCCcccCCCEEecCCeEEEEEcccee-------e
Q 023761 201 PPLKCPMAGTFYRSPAPG----------------------------EPPFVKVGDRVQKGQVLCIIEAMKLM-------N 245 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~----------------------------~~~~VkvGd~V~kGqvL~~IEamK~~-------~ 245 (277)
..|.||..|++..-.+.. =+.+|++||+|++||.|+.++-..+. .
T Consensus 500 ~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~ 579 (610)
T TIGR01995 500 GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTT 579 (610)
T ss_pred CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCee
Confidence 478888888877532211 13779999999999999998764332 2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|--.-......+....+..|..|+.++++
T Consensus 580 ~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 580 PVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred EEEEEccccccceeeccCCcccCCCeeEEe
Confidence 222111122223444556678999998875
No 146
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=89.81 E-value=0.26 Score=49.72 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|.||..|++.. +++++||.|..||+||.|+..
T Consensus 134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence 35799999999999 999999999999999999754
No 147
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.70 E-value=0.45 Score=36.40 Aligned_cols=28 Identities=46% Similarity=0.558 Sum_probs=20.3
Q ss_pred CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
-+.+|.... ++.||.|++||+||.|=+.
T Consensus 29 D~~vGi~l~---------~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 29 DPAVGIELH---------KKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp -TT-EEEES---------S-TTSEEBTTSEEEEEEES
T ss_pred CcCcCeEec---------CcCcCEECCCCeEEEEEcC
Confidence 356777654 9999999999999998543
No 148
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=89.33 E-value=0.91 Score=47.47 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=46.7
Q ss_pred CCccCCccEEEEecCCCC----------------------------CCCcccCCCEEecCCeEEEEEccce-------ee
Q 023761 201 PPLKCPMAGTFYRSPAPG----------------------------EPPFVKVGDRVQKGQVLCIIEAMKL-------MN 245 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~----------------------------~~~~VkvGd~V~kGqvL~~IEamK~-------~~ 245 (277)
..|.||..|++..-.+.. =..+|++||+|++||.|+.++-..+ ..
T Consensus 516 ~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~ 595 (627)
T PRK09824 516 GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTT 595 (627)
T ss_pred CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeE
Confidence 478999999887532111 1388999999999999999875432 11
Q ss_pred EEe-cCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 246 EIE-ADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 246 eI~-Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|- ... .....+....+..|..|++|+.+
T Consensus 596 ~vvvtn~-~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 596 PVLISNS-DDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred EEEEEcc-ccccceeeccCCcccCCCeEEEe
Confidence 211 111 11222333455668999998876
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=89.31 E-value=0.45 Score=49.30 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.++++++||.|+.||+|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence 457999999999999999999999999999986
No 150
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=88.89 E-value=0.52 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=47.5
Q ss_pred CCccCCccEEEEecCCCCCCCcc--cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFV--KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~V--kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
..|.+-++|.+.. ++ ++|+.|++||.++.++- --...+--|.+ .+.++.++.|+.|..|+.|+.
T Consensus 137 v~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~-~~~~~~v~~g~~V~~Ge~i~~ 202 (202)
T PF02666_consen 137 VQVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD-KIFEWSVKPGQKVRAGETIGY 202 (202)
T ss_pred EEeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCC-CccccccCCCCEEEeeeEEeC
Confidence 3667777888876 45 68999999999999986 33333333332 233899999999999999863
No 151
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=88.33 E-value=0.49 Score=48.95 Aligned_cols=31 Identities=32% Similarity=0.469 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+.||..|+|+.+.|++|+.|..||+|+.+|
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 3789999999999999999999999999886
No 152
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=88.23 E-value=0.38 Score=43.44 Aligned_cols=32 Identities=38% Similarity=0.566 Sum_probs=29.9
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
.|.++..|.+.. ++|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence 688889999999 99999999999999999987
No 153
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.12 E-value=0.79 Score=39.54 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=43.6
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeE-EecCCCeEEEEEe
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE-IEADRSGTIVEII 259 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~e-I~Ap~sG~V~~Il 259 (277)
.+.=|.-|.+.. +.+.+|++|.+|+.++-+.+-|...- +.+|++|+|+-+.
T Consensus 93 ll~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 93 LLLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 455688899888 89999999999999999999987654 7899999998554
No 154
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=87.98 E-value=0.4 Score=47.76 Aligned_cols=36 Identities=25% Similarity=0.416 Sum_probs=32.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
...|.||..|++.+ +++++||.|..||+|+.|+...
T Consensus 87 ~~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 87 SVDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred EEEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCCC
Confidence 35799999999999 9999999999999999997643
No 155
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=87.49 E-value=5 Score=39.31 Aligned_cols=55 Identities=31% Similarity=0.399 Sum_probs=37.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEE--EEEccceeeEEecCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC--IIEAMKLMNEIEADRSGTIVE 257 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~--~IEamK~~~eI~Ap~sG~V~~ 257 (277)
..|.|-..|.+.+--.-...+.|++||.|++||+|. .|+......++ ..+|.|..
T Consensus 190 ~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~v--~A~G~V~a 246 (385)
T PF06898_consen 190 CNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQEV--HADGDVKA 246 (385)
T ss_pred cceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceEE--CCcEEEEE
Confidence 357777888887755555668899999999999995 66654443333 34555543
No 156
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=87.01 E-value=0.86 Score=39.82 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=33.6
Q ss_pred CcccCCCEEecCCeEEEEEccceeeEEecCCCe-------EE-EEEecCCCCccCCCCeEEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSG-------TI-VEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG-------~V-~~IlVe~Gd~V~~GqpL~~I 275 (277)
.+|++||+|++||.|+..+-..+...-++...= .+ .-+....+..|..|+.++.+
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 789999999999999998765432221111111 11 12233344467788888765
No 157
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=87.00 E-value=0.51 Score=50.73 Aligned_cols=69 Identities=25% Similarity=0.247 Sum_probs=50.0
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc-eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK-LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK-~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...|...+.|...+ |++-|+..+-.+...-.++. --..|-||..|+|+++.|+.|+.|..||+|+.|+
T Consensus 1042 G~r~v~felNGq~R~---------i~v~Drs~~~~~~~r~KAd~~Np~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1042 GMRTVYFELNGQPRE---------IKVKDRSVGSSVVARRKADPGNPGHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred CcEEEEEEeCCceee---------eeecccccccccccccccCCCCccccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 445666667777666 55555555555544444443 2345889999999999999999999999999886
No 158
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=86.97 E-value=0.71 Score=31.71 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=27.9
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
..+.+|..|++.. ++++.|+.|..|+.|+.|
T Consensus 44 ~~i~a~~~g~v~~-------~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 44 VEVEAPAAGVLAK-------ILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEEECCCCEEEEE-------EeeCCcCEeCCCCEEEEC
Confidence 3689999999988 899999999999999875
No 159
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=86.66 E-value=0.73 Score=51.46 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=30.4
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||+.|+|.++++++||.|+.||+|+.|+
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 345889999999999999999999999999986
No 160
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=86.52 E-value=1.3 Score=46.49 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=32.8
Q ss_pred CCCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccc
Q 023761 200 LPPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK 242 (277)
...|.||..|++..-.+... ..+|++||+|++||.|+.++-..
T Consensus 535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 35899999999876332111 27799999999999999987543
No 161
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=86.22 E-value=0.68 Score=39.20 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCccCCccEEEEecCCCCC----------------------------CCcccCCCEEecCCeEEEEEccce
Q 023761 201 PPLKCPMAGTFYRSPAPGE----------------------------PPFVKVGDRVQKGQVLCIIEAMKL 243 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~----------------------------~~~VkvGd~V~kGqvL~~IEamK~ 243 (277)
..|.||..|++..-..-+. .++|++||+|++||.|+.++-.++
T Consensus 40 ~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiLiHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 40 GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEILIHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp SEEEESSSEEEEEE-TTSSEEEEEETTSEEEEEE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-HHHH
T ss_pred CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEEEEEccchhhcCCcceEEEEeCCCEEECCCEEEEEcHHHH
Confidence 3788999998876332111 388999999999999999876543
No 162
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=85.60 E-value=1.6 Score=38.45 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
++|++||+|++||.|+.++-.
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~~ 126 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDLP 126 (169)
T ss_pred EEecCCCEEeCCCEEEEEcHH
Confidence 789999999999999998754
No 163
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=85.41 E-value=0.81 Score=41.82 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=31.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|+||+.|++.. .+++.|+.|++|+.|+.|...
T Consensus 134 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 134 YTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred cCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence 45799999999999 899999999999999988654
No 164
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=85.05 E-value=0.82 Score=45.24 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
...|.||..|++.+ +++++||.|..|++|+.|+...
T Consensus 45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 35799999999999 9999999999999999998654
No 165
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=85.00 E-value=1.1 Score=53.48 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.0
Q ss_pred CCCCcccCCCEEecCCeEEEEE
Q 023761 218 GEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 218 ~~~~~VkvGd~V~kGqvL~~IE 239 (277)
++..+|+.|+.|++||+||..+
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEc
Confidence 4557899999999999999865
No 166
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=84.41 E-value=0.92 Score=40.60 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.4
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
.|+||+.|++.. +++.+|+.|..|+.|+.|-
T Consensus 90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence 479999999999 8999999999999998764
No 167
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.94 E-value=1.2 Score=49.61 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.+++++.||.|..||+|+.|+
T Consensus 1076 ~~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999 1076 PGHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred CceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence 356999999999999999999999999999986
No 168
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=82.87 E-value=1.2 Score=44.18 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=32.1
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|.+|..|++.+ +++++|+.|..|++|+.|+..
T Consensus 43 ~~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 35799999999999 999999999999999999864
No 169
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=82.68 E-value=1.3 Score=43.91 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=32.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|-||..|++.. +++++||.|.-|++||.|+..
T Consensus 45 ~~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 45 TMEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred eEEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecC
Confidence 34799999999999 999999999999999999885
No 170
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=82.38 E-value=2.6 Score=41.32 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=29.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC 236 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~ 236 (277)
..|.|-..|.+.+----...+.|++||.|++||+|.
T Consensus 187 ~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 187 RNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred ccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 468888889888755555668899999999999986
No 171
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=81.99 E-value=0.99 Score=44.55 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=32.3
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
.+.|.+|..|++.. .+|++||+|..||-|+.|+..
T Consensus 115 tv~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 115 TVEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence 45799999999999 999999999999999999875
No 172
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=80.01 E-value=2.4 Score=39.52 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=47.5
Q ss_pred CccCCccEEEEecC---------CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761 202 PLKCPMAGTFYRSP---------APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 272 (277)
Q Consensus 202 ~I~APm~G~~~~sp---------~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL 272 (277)
.|.|-++|.+...- ......++..|+.|++||.++.++-.- ...+--|.+ .+ ++.++.|+.|..|+.|
T Consensus 186 ~VgA~~Vg~I~~~~~~~~~~~~~~r~i~~~~~~~~~v~kGee~G~F~fGS-TVvllf~~~-~~-~~~v~~g~~V~~Ge~i 262 (265)
T PRK03934 186 FVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMGS-TIVLFSQKG-SL-EFNLKAGKSVKFGESI 262 (265)
T ss_pred EEeeEEeeEEEEEeccccccCcccCceeeeccCCceEccccEeeEEccCC-EEEEEEeCC-cc-eEccCCCCEEEcchhh
Confidence 55666777776321 111112345699999999999999754 333444433 33 5789999999999999
Q ss_pred EEE
Q 023761 273 FVI 275 (277)
Q Consensus 273 ~~I 275 (277)
..|
T Consensus 263 g~~ 265 (265)
T PRK03934 263 GEI 265 (265)
T ss_pred ccC
Confidence 764
No 173
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=78.54 E-value=1.4 Score=36.78 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.3
Q ss_pred CcccCCCEEecCCeEEEEEccc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK 242 (277)
++|++||+|++||.|+.++-..
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred EEecCCCEEcCCCEEEEEcHHH
Confidence 7899999999999999987543
No 174
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=78.46 E-value=2.2 Score=42.29 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=31.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
..+.+|..|++.+ +++++||.|..|++|+.|+...
T Consensus 42 ~ev~a~~~G~v~~-------i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQ-------INFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEeccC
Confidence 4799999999999 9999999999999999997543
No 175
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=78.37 E-value=5.2 Score=45.32 Aligned_cols=37 Identities=27% Similarity=0.369 Sum_probs=30.8
Q ss_pred CCcccCCCEEecCCeEEEEEcc-------ceeeEEecCCCeEEE
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTIV 256 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEam-------K~~~eI~Ap~sG~V~ 256 (277)
-.||+.|+.|+++|+|++|-+. |..-.|.|+.+|.|.
T Consensus 404 ~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~ 447 (1331)
T PRK02597 404 LLFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVR 447 (1331)
T ss_pred EEEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEE
Confidence 3789999999999999999874 345678899999764
No 176
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=77.89 E-value=2.3 Score=39.63 Aligned_cols=64 Identities=9% Similarity=0.004 Sum_probs=46.0
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|.+-++|.+.. ...|+.|++||.++.++-+ -.+.+--|.+-.--+..+..|+.|..|+.|..+
T Consensus 195 ~Vga~~Vg~I~~---------~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 195 KVGAMFVNSIEL---------THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EEeeEEeeEEEE---------ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 455556666654 4579999999999999987 444455554422234677899999999998764
No 177
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=77.86 E-value=4.3 Score=37.16 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=24.8
Q ss_pred CccCCccEEEE-------------------------ecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 202 PLKCPMAGTFY-------------------------RSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 202 ~I~APm~G~~~-------------------------~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
.|+||+.|++. . .++++|+.|..|+.|+.|-.
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~-------~~~~~g~~v~~g~~l~~i~~ 192 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSK-------INVNPGQYVAAGQPLFTIAD 192 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E--------TT-TT-EETSTTCSEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccce-------eccCCCCEECCCceeeeecc
Confidence 49999999999 6 88999999999999997743
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.54 E-value=1.5 Score=43.78 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=17.0
Q ss_pred EEecCCCCccCCCCeEEEE
Q 023761 257 EIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~I 275 (277)
.|+|..|+.|..|+||..+
T Consensus 372 ~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 372 SILVNPGQFVKAGEPIALV 390 (420)
T ss_pred eeeecCCCEeecCCchhhc
Confidence 6899999999999999765
No 179
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=77.39 E-value=3.1 Score=47.63 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=43.9
Q ss_pred CCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 226 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 226 Gd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|-++.-|-..|.+|...--..+++|..|.+.+++|++|+.|..||+-++||
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 555667777788887766777899999999999999999999999999876
No 180
>COG3608 Predicted deacylase [General function prediction only]
Probab=75.78 E-value=3.1 Score=40.48 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.5
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
-|+||..|.| +.+++.||.|+.|+.|+.|.+
T Consensus 258 ~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 258 MIRAPAGGLV-EFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred eeecCCCceE-EEeecCCCcccCCCeEEEEec
Confidence 4899999955 599999999999999999864
No 181
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=75.70 E-value=2.6 Score=42.03 Aligned_cols=34 Identities=12% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCE-EecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~-V~kGqvL~~IEam 241 (277)
..|.+|..|++.. +++++|+. |..|++||+|+..
T Consensus 43 ~ei~a~~~G~l~~-------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAK-------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEE-------EEECCCCEEecCCCEEEEEecc
Confidence 5799999999999 99999999 9999999999754
No 182
>PRK12784 hypothetical protein; Provisional
Probab=75.21 E-value=2.7 Score=32.98 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=29.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.-+|.+|+-|+|.++.+.+++.|-.=++||.|+
T Consensus 5 ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~ 37 (84)
T PRK12784 5 MEEICSSYEGKVEEIFVNESSYVYEWEKLMMIR 37 (84)
T ss_pred hhhhcCccccEEEEEEEcCCceEEeeeeeeEEe
Confidence 346899999999999999999999899999886
No 183
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=74.66 E-value=2.2 Score=35.81 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
++|++||+|++||.|+.+.-.
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 789999999999999998754
No 184
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=74.15 E-value=5.8 Score=42.41 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=27.7
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|-||..|+|.+|.|+.|+.|..||+|+.+.
T Consensus 1109 igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccCCCCCceEEEEEecCceecCCCceEeee
Confidence 559999999999999999999999999863
No 185
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=73.23 E-value=3.9 Score=40.11 Aligned_cols=35 Identities=34% Similarity=0.530 Sum_probs=32.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
..|.||..|++.. +++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~-------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAK-------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEE-------EecCCCCEeCCCCEEEEEecCC
Confidence 4799999999999 9999999999999999998654
No 186
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=73.00 E-value=2.9 Score=43.14 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=27.6
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.+|..|+|.+++|++||.|..||.|+.++
T Consensus 604 ~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred eecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 569999999999999999999999998764
No 187
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=72.26 E-value=4 Score=31.57 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=16.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 89999999999999999985
No 188
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=71.56 E-value=4.5 Score=38.04 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=29.7
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 242 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 242 K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-...-|+||.+|++.. .++-||.|+.||.|+.|.
T Consensus 162 ~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 162 THERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred cceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 3456799999998876 999999999999999884
No 189
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=70.98 E-value=7 Score=39.98 Aligned_cols=42 Identities=26% Similarity=0.291 Sum_probs=34.5
Q ss_pred EEEEEccceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 023761 235 LCIIEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 235 L~~IEamK~~~eI~Ap~sG~V~~------------------------IlVe~Gd~V~~GqpL~~Ie 276 (277)
...+...+...+|.|+.+|.|.. ++++.||.|..|++|++|.
T Consensus 404 ~~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 404 SDDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred ccccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 34455567888899999998874 5789999999999999985
No 190
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=69.20 E-value=6.1 Score=36.86 Aligned_cols=32 Identities=16% Similarity=0.334 Sum_probs=26.7
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
...|+||+.|++.. .++..|+.|.. +.|+.|-
T Consensus 204 ~~~i~AP~dG~V~~-------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 204 LTYVKAPIDGRVLK-------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred cCEEECCCCeEEEE-------EecCCCCccCC-CccEEEe
Confidence 45899999999999 89999999987 6666543
No 191
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=68.72 E-value=6.3 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=19.4
Q ss_pred CCCCCCcccCCCEEecCCeEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
+++.-.+|+.||.|+.||+|+.|
T Consensus 2611 p~~~~l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2611 EPKTSIAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred CCCcEEEecCCCEecccceEeec
Confidence 34455789999999999999986
No 192
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=68.21 E-value=5.1 Score=30.70 Aligned_cols=21 Identities=48% Similarity=0.639 Sum_probs=16.5
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
..|+.||.|++||.|+.+...
T Consensus 55 ~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 55 VSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESS-TTSEE-TTCEEEEEBSC
T ss_pred ccceecccccCCCEEEecCCC
Confidence 569999999999999998854
No 193
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=66.16 E-value=7.1 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=19.3
Q ss_pred CCCCCCcccCCCEEecCCeEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
+.++-..|+.||.|++||+|+.|
T Consensus 2521 p~ga~l~v~~g~~v~~Gdilaki 2543 (2836)
T PRK14844 2521 PIGAVLNVQDGQKVHAGDVITRT 2543 (2836)
T ss_pred CCCceEeeccCceecccceeecc
Confidence 34555779999999999999986
No 194
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=65.63 E-value=5.6 Score=41.04 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=24.2
Q ss_pred CCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 251 RSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 251 ~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|+|.+|++++||.|+.|++|+.|+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEe
Confidence 45999999999999999999999986
No 195
>PRK04350 thymidine phosphorylase; Provisional
Probab=65.55 E-value=10 Score=38.70 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.5
Q ss_pred EEEccceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 023761 237 IIEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 237 ~IEamK~~~eI~Ap~sG~V~~------------------------IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+...+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 455667888899999998874 5789999999999999985
No 196
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=65.06 E-value=8.3 Score=36.03 Aligned_cols=33 Identities=15% Similarity=0.059 Sum_probs=28.7
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
....|+||.+|.+. ..++.||.|..||+|++|.
T Consensus 218 ~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 218 SSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred CCeEEecCCCeEEE-EecCCCCEECCCCEEEEEE
Confidence 33678999999877 5899999999999999984
No 197
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=65.04 E-value=5.4 Score=30.44 Aligned_cols=20 Identities=25% Similarity=0.224 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.++++.||.|+.|++|++|.
T Consensus 35 ~l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 35 ELHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp EESS-TTSEEBTTSEEEEEE
T ss_pred EecCcCcCEECCCCeEEEEE
Confidence 48899999999999999984
No 198
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=62.90 E-value=14 Score=34.32 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=35.9
Q ss_pred cccCCCEEec-CCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 222 FVKVGDRVQK-GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 222 ~VkvGd~V~k-GqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.+..|+.+.+ |++|+... ..+|++|++|+|. +-....|..|+...+|
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~~~~~G~~~~~l 272 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSLRPLRGQTAVRL 272 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCCCCCCCceeeeC
Confidence 4677999999 99999943 3899999999764 3455666688877653
No 199
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=62.63 E-value=9.6 Score=35.80 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=28.3
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|+||.+|.+. ..++.|+.|..||.|++|.
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~~V~~Gq~lg~I~ 262 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGDTIPAGQPLGRVV 262 (293)
T ss_pred eEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 6679999999665 7789999999999999984
No 200
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=62.33 E-value=10 Score=45.97 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.6
Q ss_pred EecCCCCccCCCCeEEEE
Q 023761 258 IIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 258 IlVe~Gd~V~~GqpL~~I 275 (277)
+.|++|+.|..|+.|+.+
T Consensus 2616 l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred EEecCCCEecccceEeec
Confidence 568899999999999876
No 201
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=62.19 E-value=7.8 Score=39.17 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEam 241 (277)
..|.+|..|++.+ +++++|+ .|+.|++||+|+..
T Consensus 46 ~ev~A~~~G~v~~-------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGK-------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEE-------EEecCCCcEeCCCCEEEEEccC
Confidence 5799999999999 9999995 79999999999653
No 202
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=62.08 E-value=13 Score=38.74 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=33.9
Q ss_pred CcccCCCEEecCCeEEEEEcc-ceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM-KLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam-K~~~eI~--Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+.+++||.|..||+|+.+.-. -..+.|- ..+.|+|+.| +..|+. ...++|+++
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~y-tv~~~i~~~ 177 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGDY-TVDDTIAVL 177 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEE
Confidence 468999999999999987654 2333333 3447888766 345554 334555544
No 203
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=61.68 E-value=9.6 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=28.0
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..-|+||.+|.+. -.++.||.|+.||.|++|.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCCEECCCCEEEEEe
Confidence 5678999999766 6789999999999999984
No 204
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=61.68 E-value=18 Score=37.53 Aligned_cols=54 Identities=28% Similarity=0.357 Sum_probs=36.7
Q ss_pred CcccCCCEEecCCeEEEEEccceeeEE--ecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMKLMNEI--EADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK~~~eI--~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+.|++||.|..||+|+.+.-..+...| .-+..|.+..+....|+. ...+.|+++
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v 175 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATV 175 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEE
Confidence 457999999999999987544422332 345566666677778876 445666665
No 205
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=61.31 E-value=13 Score=38.11 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=32.5
Q ss_pred EEccceeeEEecCCCeEEEE------------------------EecCCCCccCCCCeEEEEc
Q 023761 238 IEAMKLMNEIEADRSGTIVE------------------------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 238 IEamK~~~eI~Ap~sG~V~~------------------------IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 44567788889999988874 5788999999999999985
No 206
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=60.97 E-value=16 Score=27.98 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=34.4
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|.|++.|++.. +.... .-|. ..+|+...-...+... +..+.++.||.|..|+.|..+.
T Consensus 15 ~V~A~~~G~V~~---------~~~~~--~~g~-~V~i~~~~g~~~~y~~----l~~~~v~~G~~V~~G~~IG~~g 73 (96)
T PF01551_consen 15 PVYAPADGKVVF---------VGEDP--GYGN-YVIIQHGNGYITVYGH----LDSVSVKVGDRVKAGQVIGTVG 73 (96)
T ss_dssp EEEESSSEEEEE---------EEEET--TTEE-EEEEEETTSEEEEEEE----ESEESS-TTSEE-TTCEEEEEB
T ss_pred EEEeCccEEEEE---------EEecc--CCcc-EEEEEeCCcCCEEEec----cccccceecccccCCCEEEecC
Confidence 599999999977 22211 1233 3344433322223222 5556799999999999998763
No 207
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=60.95 E-value=9.5 Score=43.31 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.6
Q ss_pred CCCCCCcccCCCEEecCCeEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
++++-.++..||.|++||.|+.+
T Consensus 947 s~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 947 SPGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCCEEEecCCCEecCCCeEEEE
Confidence 57788899999999999999976
No 208
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=60.14 E-value=11 Score=36.60 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=27.2
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.-|+||.+|.+. -.++.||.|+.||.|++|.
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred EEEeCCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 458999999665 7789999999999999984
No 209
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.99 E-value=12 Score=35.00 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=28.7
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 242 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 242 K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
....-++||.+|.+. ..++.||.|..||+|++|.
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCCEecCCCEEEEEE
Confidence 445678999999665 7789999999999999984
No 210
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=58.27 E-value=22 Score=35.20 Aligned_cols=53 Identities=30% Similarity=0.453 Sum_probs=34.4
Q ss_pred CcccCCCEEecCCeEEEEEcc-ceeeEEecC--CCeEEEEEecCCCCccCCCCeEEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM-KLMNEIEAD--RSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam-K~~~eI~Ap--~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+.+++||.|..||+++.+.-. -..+.|-.| ..|+|+.| +..|+. ...+.++++
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~~-~~~~~~~~~ 108 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGDY-TVDDVILEV 108 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCCe-eEEEEEEEE
Confidence 358999999999999988533 345555444 48998864 345663 223444443
No 211
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=57.62 E-value=6.6 Score=36.95 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=25.1
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 247 IEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
+-.++-|..-+++|++||.|..||+||+
T Consensus 32 ~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 32 LPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred cCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 4467889899999999999999999996
No 212
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=57.50 E-value=13 Score=35.65 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-|+||.+|.+. -.++.|+.|..||+|++|.
T Consensus 257 ~v~Ap~~Gi~~-~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 257 FIFAEDDGLIE-FMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred EEEcCCCeEEE-EecCCCCEeCCCCEEEEEE
Confidence 59999999776 8899999999999999984
No 213
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=57.27 E-value=21 Score=34.56 Aligned_cols=19 Identities=5% Similarity=0.300 Sum_probs=15.5
Q ss_pred EEecCCCCccCCCCeEEEE
Q 023761 257 EIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~I 275 (277)
+++|++||.|+.||.|.++
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~ 289 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATM 289 (319)
T ss_pred ccccCCcCEECCCCeEEeE
Confidence 4678889999999988865
No 214
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=56.56 E-value=11 Score=34.44 Aligned_cols=48 Identities=10% Similarity=-0.004 Sum_probs=36.1
Q ss_pred CCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 226 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 226 Gd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
|+.|++||.++.++-.- ...+--|.+-.--+..++.|+.|..|+.|..
T Consensus 189 g~~v~kGee~G~F~fGS-tVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELGS-TVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCCC-eEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 99999999999999753 4444455432223678899999999999864
No 215
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=56.26 E-value=22 Score=39.53 Aligned_cols=53 Identities=26% Similarity=0.438 Sum_probs=36.1
Q ss_pred cccCCCEEecCCeEEEEE-ccceeeEEec--CCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 222 FVKVGDRVQKGQVLCIIE-AMKLMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IE-amK~~~eI~A--p~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+++||+|..||+++.|. +.-+.+.|-- .+.|+|+.| +..|+. ...+.+++|+
T Consensus 123 ~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~~-~~~~~~~~~~ 178 (1017)
T PRK14698 123 KVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGEY-TIEEVIAKVK 178 (1017)
T ss_pred eeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCCc-ceeeEEEEEE
Confidence 489999999999999875 3334444533 347999876 456774 3456666654
No 216
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=55.25 E-value=9.3 Score=29.52 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=19.0
Q ss_pred eEEEEEecCCCCccCCCCeEEEEc
Q 023761 253 GTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 253 G~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|.-.++++++|+.|..|++|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 555679999999999999999985
No 217
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=54.74 E-value=12 Score=37.29 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=25.1
Q ss_pred CCCccCCccEEEEecC------------------------CCCCCCcccCCCEEecCCeEEEEE
Q 023761 200 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp------------------------~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
...|+|+..|++..-. .-+-.++++.||+|++||+||.|=
T Consensus 333 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 333 KEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred EEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3478899999888521 111225666777777777776654
No 218
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=54.30 E-value=20 Score=36.19 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=30.0
Q ss_pred ccceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 023761 240 AMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 240 amK~~~eI~Ap~sG~V~-------------------------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+...+|+|+.+|.|. .++++.||.|..|++|++|.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 35667778888888775 46788999999999999984
No 219
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=54.10 E-value=27 Score=36.58 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=36.6
Q ss_pred cccCCCEEecCCeEEEEE-ccceeeEEec--CCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 222 FVKVGDRVQKGQVLCIIE-AMKLMNEIEA--DRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IE-amK~~~eI~A--p~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.+++||.|..||+++.+. +.-..+.|-. .+.|+|+.| +.+|+. ...+++++++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~y-tv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGNY-TVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCCc-eeeeEEEEEe
Confidence 689999999999999764 4434455543 457999866 456764 4466666654
No 220
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=53.56 E-value=24 Score=33.53 Aligned_cols=33 Identities=15% Similarity=-0.029 Sum_probs=28.3
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...-|+||.+|.+. -.++.|+.|+.||+|++|.
T Consensus 243 ~~~~v~A~~~G~~~-~~~~~G~~V~~G~~lg~i~ 275 (316)
T cd06252 243 ARCYVFAPHPGLFE-PLVDLGDEVSAGQVAGRIH 275 (316)
T ss_pred CcEEEEcCCCeEEE-EecCCCCEEcCCCEEEEEE
Confidence 44678999999665 7899999999999999974
No 221
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=53.27 E-value=22 Score=35.49 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=30.4
Q ss_pred EEccceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 023761 238 IEAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 238 IEamK~~~eI~Ap~sG~V~-------------------------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+-..+...+|.|+.+|.|. .++.+.||.|..|++|++|.
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3345667777777777776 46778899999999999985
No 222
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=53.13 E-value=16 Score=35.34 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=31.3
Q ss_pred CCccCCccEEEEecCC-C---------------------CCCCcccCCCEEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPA-P---------------------GEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~-p---------------------~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
..|+|...|++...-. . -..+.|++||.|++||.|+.+-..
T Consensus 230 ~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~t 292 (319)
T PRK10871 230 QAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGST 292 (319)
T ss_pred CeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcCC
Confidence 3788999999876532 1 124789999999999999988653
No 223
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=52.97 E-value=22 Score=35.94 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=28.8
Q ss_pred ccceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 023761 240 AMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 240 amK~~~eI~Ap~sG~V~-------------------------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..+...+|.|+.+|.|. .++++.||.|+.|++|++|.
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 34566777777777776 35778899999999999984
No 224
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=50.60 E-value=19 Score=41.21 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=32.2
Q ss_pred CCCCCcccCCCEEecCCeEEEEEcc--------ceeeEEecCCCeEEE
Q 023761 217 PGEPPFVKVGDRVQKGQVLCIIEAM--------KLMNEIEADRSGTIV 256 (277)
Q Consensus 217 p~~~~~VkvGd~V~kGqvL~~IEam--------K~~~eI~Ap~sG~V~ 256 (277)
++.-.+|+.||.|++||+||++... |...+|.++.+|.|.
T Consensus 402 ~gs~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 402 PKSLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred CCCEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 3445789999999999999999873 234788999999864
No 225
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=49.99 E-value=26 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.168 Sum_probs=29.2
Q ss_pred EccceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 023761 239 EAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 239 EamK~~~eI~Ap~sG~V~-------------------------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-.-+...+|.|+.+|.|. .++.+.||.|..|++|++|.
T Consensus 330 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~ 398 (434)
T PRK06078 330 PQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIY 398 (434)
T ss_pred CCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEe
Confidence 345566777777777766 46788999999999999984
No 226
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=49.03 E-value=12 Score=35.58 Aligned_cols=21 Identities=52% Similarity=0.626 Sum_probs=19.5
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
|+++.|+.|++||+|+.++..
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEcCCCCEeCCCCEEEEEecc
Confidence 789999999999999999864
No 227
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=48.17 E-value=15 Score=37.33 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=23.9
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEc
Q 023761 252 SGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 252 sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|.|+.|+-++||.++.|+.|++||
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVE 76 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVE 76 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEe
Confidence 5999999999999999999999997
No 228
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=46.29 E-value=22 Score=40.23 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=20.6
Q ss_pred CCCCCCcccCCCEEecCCeEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
++++-.++..||.|++||.|+.+
T Consensus 945 s~ga~~~~~~g~~v~~Gd~L~~l 967 (1227)
T TIGR02388 945 SPGAVLHIEDGDLVQRGDNLALL 967 (1227)
T ss_pred CCCCEEEecCCCEecCCCEEEEE
Confidence 57778899999999999999975
No 229
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=46.03 E-value=14 Score=37.21 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=29.9
Q ss_pred CCCccCCccEEEEecC------------------------CCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp------------------------~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+|+..|++..-. .-+-.++++.||+|++||+|+.|=+
T Consensus 339 ~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 339 IKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcCEeCCCCeEEEEEC
Confidence 3467888888876521 1122388999999999999999853
No 230
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=45.48 E-value=15 Score=37.09 Aligned_cols=41 Identities=24% Similarity=0.407 Sum_probs=30.2
Q ss_pred CCCccCCccEEEEecC------------------------CCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp------------------------~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+|+..|++..-. .-+-.++++.||.|++||+||.|=+
T Consensus 340 ~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 340 TKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred EEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 3467888888885411 1223478999999999999999863
No 231
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=45.24 E-value=20 Score=28.03 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCeEEEEEecCC-CCccCCCCeEEEEc
Q 023761 250 DRSGTIVEIIAED-RKPVSVDTPLFVIE 276 (277)
Q Consensus 250 p~sG~V~~IlVe~-Gd~V~~GqpL~~Ie 276 (277)
..-|.|..+.... |+.|..|++|+.|+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iE 53 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVE 53 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEE
Confidence 3468888877655 99999999999986
No 232
>PRK11637 AmiB activator; Provisional
Probab=43.18 E-value=54 Score=32.25 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=12.4
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
+.|++||.|++||+|+.+-.
T Consensus 381 ~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CCCCCcCEECCCCeEEeecC
Confidence 45666666666666666543
No 233
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=43.14 E-value=20 Score=33.78 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=34.9
Q ss_pred CCEEecCCeEEEEEccceeeEEecCCCeEEE-EEecCCCCccCCCCeEEEE
Q 023761 226 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIV-EIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 226 Gd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~-~IlVe~Gd~V~~GqpL~~I 275 (277)
|..|++||.++.++-+ -...+--|.+ ++. ...+..|+.|..|+.|+.+
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~ 285 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHI 285 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCc
Confidence 7799999999999875 3333444443 332 3457899999999999865
No 234
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=43.07 E-value=17 Score=36.64 Aligned_cols=42 Identities=31% Similarity=0.238 Sum_probs=31.1
Q ss_pred CCCccCCccEEEEecC------------------------CCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSP------------------------APGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp------------------------~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|+|+..|++..-. .-+-.++++.||.|++||+||.|=..
T Consensus 335 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~ 400 (434)
T PRK06078 335 QIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYAN 400 (434)
T ss_pred EEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCC
Confidence 3467888888887522 22234789999999999999998643
No 235
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=42.93 E-value=50 Score=34.60 Aligned_cols=52 Identities=33% Similarity=0.547 Sum_probs=34.1
Q ss_pred cccCCCEEecCCeEEEE-EccceeeEEe--cCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 222 FVKVGDRVQKGQVLCII-EAMKLMNEIE--ADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~I-EamK~~~eI~--Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.+++||.|..||+++.+ |+.-+.+.|- ..+.|+|+.| +..|+. ...+++..+
T Consensus 120 ~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~~-~~~~~v~~~ 174 (578)
T TIGR01043 120 TVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGDY-TVEDTIAVV 174 (578)
T ss_pred ccccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCCc-eeeeeEEEE
Confidence 58999999999999987 4444444443 3458998876 345653 334444444
No 236
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=42.34 E-value=19 Score=32.24 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.4
Q ss_pred CCcccCCCEEecCCeEEEEEc
Q 023761 220 PPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|++||.|++||+|+.+-.
T Consensus 215 ~~~V~~G~~V~~G~~Ig~~G~ 235 (277)
T COG0739 215 SILVKEGQKVKAGQVIGYVGS 235 (277)
T ss_pred hhccCCCCEeccCCEEEEecC
Confidence 478999999999999998843
No 237
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=40.80 E-value=22 Score=30.97 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 226 GDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 226 Gd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|-.+++|+-||.+++. |..+-+.+..|+.|..|+.|+.+.
T Consensus 73 ~~~l~~G~~L~l~~ve-----------G~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 73 GILLKKGTELCLVPVE-----------GYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp EEEE-TT-B-EEEEEE-----------SSEEEESS-TSEEE-TT-EEEEEE
T ss_pred EEEECCCCEEEEEEec-----------ceEEEEEcccCcEeccCcEEEEEE
Confidence 3446677878877654 555567888999999999999874
No 238
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=40.50 E-value=20 Score=33.33 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=31.5
Q ss_pred ccC-CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeE
Q 023761 203 LKC-PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNE 246 (277)
Q Consensus 203 I~A-Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~e 246 (277)
|++ .|.|-++.+ .++|.+|..|++=|+.|.||.+|....
T Consensus 168 vrsi~~~gl~wga-----sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 168 VRSIEMDGLVWGA-----SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred HHHhhhccceecc-----ccccccccceeeEEEEEEEEcCccccc
Confidence 444 367888763 389999999999999999999997654
No 239
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=39.23 E-value=77 Score=27.94 Aligned_cols=70 Identities=14% Similarity=0.123 Sum_probs=39.7
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCE--------EecCCe-EEEEEccc--e-eeEEecCCCeEEEEEecCCCCcc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDR--------VQKGQV-LCIIEAMK--L-MNEIEADRSGTIVEIIAEDRKPV 266 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~--------V~kGqv-L~~IEamK--~-~~eI~Ap~sG~V~~IlVe~Gd~V 266 (277)
+...+++|+.|++.. .....|+. -.+++. ++.+|+.. + +..|-+-..+.|. ..+++|+.+
T Consensus 71 DyHr~haP~~G~v~~-------~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i~-~~~~~g~~v 142 (189)
T TIGR00164 71 DVHVNRAPAGGKVTY-------VKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRIV-CYVKEGEKV 142 (189)
T ss_pred ccceEEcccccEEEE-------EEEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEEE-EecCCCCEE
Confidence 456789999999887 33334431 123443 35666542 2 2222222222332 255789999
Q ss_pred CCCCeEEEEc
Q 023761 267 SVDTPLFVIE 276 (277)
Q Consensus 267 ~~GqpL~~Ie 276 (277)
..|+-+..++
T Consensus 143 ~kGeeiG~f~ 152 (189)
T TIGR00164 143 SRGQRIGMIR 152 (189)
T ss_pred ecCcEEEEEe
Confidence 9999887764
No 240
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=39.07 E-value=35 Score=33.45 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=26.7
Q ss_pred cceeeEEecCCCeEEEEEec-------CCCCccCCCCeEEE
Q 023761 241 MKLMNEIEADRSGTIVEIIA-------EDRKPVSVDTPLFV 274 (277)
Q Consensus 241 mK~~~eI~Ap~sG~V~~IlV-------e~Gd~V~~GqpL~~ 274 (277)
+..-..|.|..+|+|+++.+ +.||.|..||.|+.
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 44556788999999999765 56677999999874
No 241
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=39.03 E-value=20 Score=36.78 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=31.0
Q ss_pred CCCccCCccEEEEecC-----------------CCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp-----------------~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+|+..|++..-. .-+-.++++.||+|++||+|+.|=+
T Consensus 413 ~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 413 TADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred EEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 3468888888887622 2233488999999999999999854
No 242
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=39.02 E-value=89 Score=27.93 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=41.1
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCE--------EecCC-eEEEEEccc----eeeEEecCCCeEEEEEecCCCCc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDR--------VQKGQ-VLCIIEAMK----LMNEIEADRSGTIVEIIAEDRKP 265 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~--------V~kGq-vL~~IEamK----~~~eI~Ap~sG~V~~IlVe~Gd~ 265 (277)
+...+++|+.|++.. ..-..|+. -.+++ .+..+|+.+ .+..|-+-..+.|. ..++.|+.
T Consensus 90 d~H~~~aP~~G~V~~-------~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~ 161 (206)
T PRK05305 90 NVHVNRAPVSGTVTK-------VEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDE 161 (206)
T ss_pred cCCEEEeCccCEEEE-------EEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCE
Confidence 446789999999887 33333332 12333 445667642 12223333334443 25688999
Q ss_pred cCCCCeEEEEc
Q 023761 266 VSVDTPLFVIE 276 (277)
Q Consensus 266 V~~GqpL~~Ie 276 (277)
+..|+-+..++
T Consensus 162 v~kGe~~G~f~ 172 (206)
T PRK05305 162 VERGERFGLIR 172 (206)
T ss_pred EccCcEEeEEe
Confidence 99999888764
No 243
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=38.67 E-value=83 Score=36.25 Aligned_cols=74 Identities=12% Similarity=0.229 Sum_probs=44.1
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCE--EecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDR--VQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~--V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|+||..|++.-.........-.-|+. +.+...+.+|+.......+.-|... .++|++|+.|+.||.|+++.|
T Consensus 350 ~~i~a~~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs---~l~v~~g~~V~~~q~iae~~~ 425 (1364)
T CHL00117 350 EQVRAPFNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKS---LLLVQNDQYVESEQVIAEIRA 425 (1364)
T ss_pred eeEEeccCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCC---EEEEeCcCEEcCCCEEEEECC
Confidence 4799999999887221111111122221 2223334445554444555555544 368999999999999999865
No 244
>PRK11637 AmiB activator; Provisional
Probab=38.25 E-value=25 Score=34.67 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=12.7
Q ss_pred ecCCCCccCCCCeEEEE
Q 023761 259 IAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 259 lVe~Gd~V~~GqpL~~I 275 (277)
.|..||.|..|++|..+
T Consensus 382 ~v~~G~~V~~G~~ig~~ 398 (428)
T PRK11637 382 LVSVGAQVRAGQPIALV 398 (428)
T ss_pred CCCCcCEECCCCeEEee
Confidence 46778888888887765
No 245
>PRK04350 thymidine phosphorylase; Provisional
Probab=38.06 E-value=21 Score=36.52 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=31.7
Q ss_pred CCCccCCccEEEEecC-----------------CCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp-----------------~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+|+..|++..-. .-+-.++++.||+|++||+|+.|=+
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 3478899999887622 2233488999999999999999864
No 246
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=38.02 E-value=31 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.236 Sum_probs=24.8
Q ss_pred eeEEecCCCeEEEEEec-------CCCCccCCCCeEEE
Q 023761 244 MNEIEADRSGTIVEIIA-------EDRKPVSVDTPLFV 274 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlV-------e~Gd~V~~GqpL~~ 274 (277)
-..|.|..+|+|+++.+ +.||.|..||.|..
T Consensus 186 P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 186 PRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 45788999999999865 55677899999873
No 247
>PRK02259 aspartoacylase; Provisional
Probab=37.79 E-value=23 Score=33.19 Aligned_cols=61 Identities=11% Similarity=0.008 Sum_probs=41.8
Q ss_pred CccCC---ccEEEEecCCCCCCCcccCC--CEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 202 PLKCP---MAGTFYRSPAPGEPPFVKVG--DRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 202 ~I~AP---m~G~~~~sp~p~~~~~VkvG--d~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
..+++ ..|.|. +.|+.| +.|++||+|+.+ .+.....+.++..|+.. .+.+.-.++.|..++
T Consensus 216 ~pr~~~g~~~g~vh--------p~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pv--fine~ay~~kg~a~~ 281 (288)
T PRK02259 216 YPRDENGQIAAMIH--------PQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPV--FINEAAYYEKGIAMS 281 (288)
T ss_pred CCCCCCCCEeEEec--------hhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeE--EecHHHHHhhhhHhh
Confidence 44666 456654 367778 559999999988 56667778888888774 444555666665443
No 248
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.70 E-value=68 Score=27.92 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 250 DRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 250 p~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|+.|.++-..+..|+.|-.|++++-+.
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAvt 123 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAVT 123 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEEE
Confidence 778999999999999999999998763
No 249
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=36.52 E-value=24 Score=36.28 Aligned_cols=41 Identities=32% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCCccCCccEEEEecC-----------------CCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSP-----------------APGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp-----------------~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+||..|++..-. .-+-.++++.||.|++||+|+.|=+
T Consensus 414 ~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 414 TYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 3468888888887622 2233488999999999999999854
No 250
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=35.51 E-value=63 Score=25.98 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=19.2
Q ss_pred CeEEEEEecCCCCccCCCCeEEEE
Q 023761 252 SGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 252 sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|.-.+.+|+.||.|..||.|++.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEA 61 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEec
Confidence 445556888999999999999864
No 251
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.93 E-value=22 Score=37.98 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=25.9
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
+.|.|-|+|.+.. .+++||.|++||.|+...=
T Consensus 886 VaiGAmMVGSi~l--------t~kEgd~V~~gdELGYFkF 917 (975)
T KOG2419|consen 886 VAIGAMMVGSILL--------TRKEGDHVKKGDELGYFKF 917 (975)
T ss_pred EeecceeeeeEEE--------EeecCcccccccccceEee
Confidence 4677889998876 7899999999998876543
No 252
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=32.77 E-value=41 Score=31.47 Aligned_cols=21 Identities=52% Similarity=0.676 Sum_probs=19.3
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
|+++.|+.|++||+|+.|+..
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred EEeCCCCEecCCCEEEEEEEC
Confidence 889999999999999999853
No 253
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.50 E-value=32 Score=32.45 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 68 ~~~~dG~~v~~g~~i~~~~G 87 (277)
T PRK08072 68 LHKKDGDLVKKGEIIATVQG 87 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 79999999999999999985
No 254
>PRK13380 glycine cleavage system protein H; Provisional
Probab=30.97 E-value=43 Score=28.62 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=25.9
Q ss_pred EEecCCCeEEEEEecC-CCCccCCCCeEEEEc
Q 023761 246 EIEADRSGTIVEIIAE-DRKPVSVDTPLFVIE 276 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe-~Gd~V~~GqpL~~Ie 276 (277)
.+....-|.|..+.+. .|+.|..|++|+.|+
T Consensus 37 d~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IE 68 (144)
T PRK13380 37 DYAQTMAGDVVFVRLKELGKKVEKGKPVATLE 68 (144)
T ss_pred HHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEE
Confidence 3445667889999886 899999999999986
No 255
>PRK06149 hypothetical protein; Provisional
Probab=30.59 E-value=34 Score=37.53 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=29.0
Q ss_pred CCccCCccEEEEecCCC-----CC---------CCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAP-----GE---------PPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p-----~~---------~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|.||+.|++...-.- +. ...+++||.|++||.||.+-.
T Consensus 443 t~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 443 TAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 46899999998774321 00 122889999999999998875
No 256
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=29.68 E-value=1e+02 Score=27.92 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=42.1
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc---eeeEEecCCCeEEEEEecCCCCcc
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 266 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK---~~~eI~Ap~sG~V~~IlVe~Gd~V 266 (277)
.|..-..|.+ ++..|.....|+++-+.|+|| ..+.|.-+ .|+|.+|.|.+++..
T Consensus 59 aI~~~L~g~y----------~lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 59 AIADALDGDY----------RLRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred HHHhhcCCCc----------eEeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 4666667733 357899999999999888876 55556666 999999999999985
No 257
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=29.15 E-value=20 Score=30.04 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=20.2
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLC 236 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~ 236 (277)
.|...-.-.+...-+++-+..|++||.|+.||.|-
T Consensus 27 tI~~~dG~~v~~~IP~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 27 TIETSDGETVVETIPAGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp EEETTTSEEEEEEEESSS-BS--TT-EETTT-BSB
T ss_pred EEECCCCCEEEEecCCCCeEEEcCCCEEecCCccc
Confidence 45443333455555678889999999999999874
No 258
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.13 E-value=39 Score=32.14 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 65 ~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 65 DAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 89999999999999999975
No 259
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=28.91 E-value=64 Score=36.71 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=29.6
Q ss_pred CCCcccCCCEEecCCeEEEEEcc-------ceeeEEecCCCeEEE
Q 023761 219 EPPFVKVGDRVQKGQVLCIIEAM-------KLMNEIEADRSGTIV 256 (277)
Q Consensus 219 ~~~~VkvGd~V~kGqvL~~IEam-------K~~~eI~Ap~sG~V~ 256 (277)
.-.+|+.|+.|+++|+|++|-+. |..-.|.++.+|.|.
T Consensus 403 s~l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~ 447 (1227)
T TIGR02388 403 SLLFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVK 447 (1227)
T ss_pred CEEEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEE
Confidence 33789999999999999999874 344567788777654
No 260
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=28.87 E-value=1.8e+02 Score=27.21 Aligned_cols=26 Identities=19% Similarity=-0.090 Sum_probs=21.2
Q ss_pred cceeeEEecCCCeEEEEEecCCCCcc
Q 023761 241 MKLMNEIEADRSGTIVEIIAEDRKPV 266 (277)
Q Consensus 241 mK~~~eI~Ap~sG~V~~IlVe~Gd~V 266 (277)
-.-.+-+.+|++|+|.+...-.|+.-
T Consensus 125 p~dYHr~hsP~~G~v~~~~~ipG~~~ 150 (265)
T PRK03934 125 PKDYHRYHAPCDLEILEARYIPGKLY 150 (265)
T ss_pred cceEEEEeccCCcEEEEEEEcCCeee
Confidence 44566688999999999999999853
No 261
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=28.59 E-value=1.3e+02 Score=21.27 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCCcEEEEEeCC--eEEEEEe
Q 023761 110 VSSLIKLVDSRDIVELQLKQLD--CELIIRK 138 (277)
Q Consensus 110 I~eLik~vd~s~I~ELelk~~~--~~L~IrK 138 (277)
.+.|.+|++..+..-+.++..+ ++|.|+|
T Consensus 39 ~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~k 69 (69)
T cd00291 39 VEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCEEEEEEEC
Confidence 5666778888888877666554 7777764
No 262
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.44 E-value=41 Score=32.00 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G 88 (281)
T PRK06543 69 LAVADGERFEAGDILATVTG 88 (281)
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 79999999999999999975
No 263
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.16 E-value=43 Score=31.69 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.2
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
|+++.|+.|++||+|+.++..
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEc
Confidence 889999999999999999853
No 264
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.08 E-value=34 Score=34.41 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.0
Q ss_pred CCccCCccEEEEecCCCC---------------------CCCcccCCCEEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPG---------------------EPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~---------------------~~~~VkvGd~V~kGqvL~~IEam 241 (277)
..|+||-.|++..+-.-. ..+.|++|+.|..||+|+.+-.-
T Consensus 332 a~V~A~AdG~VvyA~~l~GYG~vvIldhG~gy~slyg~~~~i~v~~G~~V~AGepIa~~G~s 393 (420)
T COG4942 332 ATVKAIADGRVVYADWLRGYGLVVILDHGGGYHSLYGGNQSILVNPGQFVKAGEPIALVGSS 393 (420)
T ss_pred CeeeeecCceEEechhhccCceEEEEEcCCccEEEecccceeeecCCCEeecCCchhhccCC
Confidence 367777777766533111 13789999999999999987543
No 265
>PRK11649 putative peptidase; Provisional
Probab=27.99 E-value=46 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.6
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
..|++||+|++||+|+.+-.
T Consensus 365 ~~v~~Gq~V~~Gq~IG~vG~ 384 (439)
T PRK11649 365 LLVKPGQKVKRGDRIALSGN 384 (439)
T ss_pred ccCCCcCEECCCCeEEEEcC
Confidence 56999999999999998754
No 266
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=27.21 E-value=1e+02 Score=31.30 Aligned_cols=20 Identities=20% Similarity=0.116 Sum_probs=17.1
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.++.+.||.|+.|++|++|.
T Consensus 380 ~l~kk~ge~Vk~Gd~l~tiy 399 (435)
T COG0213 380 YLHKKLGEKVKKGDPLATIY 399 (435)
T ss_pred EEEecCCCeeccCCeEEEEe
Confidence 36778899999999999984
No 267
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.03 E-value=64 Score=30.16 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCCccCCCCeEEEEc
Q 023761 252 SGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 252 sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+|.-.++++++|+.|..|++|++++
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5777789999999999999999985
No 268
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.46 E-value=48 Score=31.57 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G 95 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEG 95 (288)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999975
No 269
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=26.36 E-value=60 Score=31.91 Aligned_cols=73 Identities=11% Similarity=0.030 Sum_probs=46.8
Q ss_pred CCccCCccEEEEecCCCC-----------------CCCcccCCCEEecCCeEEEEEccceeeE-EecCCCeEEEEEecCC
Q 023761 201 PPLKCPMAGTFYRSPAPG-----------------EPPFVKVGDRVQKGQVLCIIEAMKLMNE-IEADRSGTIVEIIAED 262 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~-----------------~~~~VkvGd~V~kGqvL~~IEamK~~~e-I~Ap~sG~V~~IlVe~ 262 (277)
..|.|-++|.+...-.+. ..+.-..+..|++||.++.-+-+-...- .+++. . -+..++.
T Consensus 249 v~VGA~~VGsI~~~~~~~l~tn~~~~~~~~~~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~-~~~~l~~ 325 (353)
T PTZ00403 249 AAISAYNVGNIKIINDEELVTNNLRTQLSYMGGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--N-FSWNVKP 325 (353)
T ss_pred EEEeeEEEEEEEEEeccccccccccccccccCCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--c-CCcccCC
Confidence 467888888886321100 0122223568999999998886543332 33543 2 3456789
Q ss_pred CCccCCCCeEEEEc
Q 023761 263 RKPVSVDTPLFVIE 276 (277)
Q Consensus 263 Gd~V~~GqpL~~Ie 276 (277)
|+.|..||.|..+.
T Consensus 326 g~~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 326 NQTVSVGQRLGGVG 339 (353)
T ss_pred CCEEEeeeeccccC
Confidence 99999999998764
No 270
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.86 E-value=49 Score=31.21 Aligned_cols=20 Identities=40% Similarity=0.589 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (273)
T PRK05848 62 FTIKDGERFKKGDILMEIEG 81 (273)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 271
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.84 E-value=49 Score=30.81 Aligned_cols=21 Identities=52% Similarity=0.615 Sum_probs=19.3
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
|+++.|+.|++|++|+.|+..
T Consensus 61 ~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 61 WLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEeCCCCEecCCCEEEEEEEc
Confidence 789999999999999999853
No 272
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.49 E-value=50 Score=31.67 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++|++|+.++.
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEe
Confidence 78999999999999999975
No 273
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=24.86 E-value=68 Score=31.02 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++|++|+.++.
T Consensus 82 ~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 82 WAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 89999999999999999975
No 274
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.82 E-value=95 Score=22.29 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCCcEEEE--EeCCeEEEEEe
Q 023761 111 SSLIKLVDSRDIVELQL--KQLDCELIIRK 138 (277)
Q Consensus 111 ~eLik~vd~s~I~ELel--k~~~~~L~IrK 138 (277)
+.|.+|+++.+..-+++ ..+.++|.|+|
T Consensus 41 ~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 41 EDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 44455666666655555 44568888876
No 275
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.74 E-value=53 Score=30.77 Aligned_cols=21 Identities=33% Similarity=0.306 Sum_probs=19.2
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
|++++|+.|++||+|+.|+..
T Consensus 60 ~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 60 LAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEcCCCCEecCCCEEEEEEEc
Confidence 789999999999999999853
No 276
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=24.59 E-value=87 Score=27.91 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=31.3
Q ss_pred ccCCCEEecCCeEEEEEccc---eeeEEecCCCeEEEEEecCCCCcc
Q 023761 223 VKVGDRVQKGQVLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 266 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK---~~~eI~Ap~sG~V~~IlVe~Gd~V 266 (277)
++.|.+-..|+++-++|+|| ..+.|.-+-.|+|.+|.|.+.+..
T Consensus 49 lrsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 49 LRSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred EecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 36788999999999999876 566677677899999999999875
No 277
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=24.52 E-value=88 Score=29.02 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=43.7
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEec--------CC-eEEEEEccc---eeeEEecCCCeEEEEEecCCCCcc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK--------GQ-VLCIIEAMK---LMNEIEADRSGTIVEIIAEDRKPV 266 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k--------Gq-vL~~IEamK---~~~eI~Ap~sG~V~~IlVe~Gd~V 266 (277)
+.+..++|..|++.. .--..|+.... ++ .+|+|++.. .+.+|-+-..|.|. ..++.|+.|
T Consensus 123 DyHr~haP~~G~i~~-------~~~~~G~~~~v~~~~~~~~NER~~~~i~t~~g~v~~v~Vga~~v~~Iv-~~~~~~~~v 194 (239)
T COG0688 123 DYHRNHAPVDGTIIE-------VRYVPGKFFSANLDKAFTENERNSVLIETEQGKVVVVQVAGLVARRIV-CYVKEGDTV 194 (239)
T ss_pred eeeeEeCCCCCEEEE-------EEEECCceeccChhhhhcccceEEEEEEcCCCcEEEEEEhhheeeEEE-EEecCCcEE
Confidence 456789999999887 44445554333 22 456777665 34556667777776 334558888
Q ss_pred CCCCeEEE
Q 023761 267 SVDTPLFV 274 (277)
Q Consensus 267 ~~GqpL~~ 274 (277)
.+|+.+..
T Consensus 195 ~~G~~~G~ 202 (239)
T COG0688 195 KKGERIGG 202 (239)
T ss_pred Ehhhhhhh
Confidence 88876643
No 278
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.37 E-value=55 Score=31.27 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 80 ~~~~dG~~v~~g~~i~~i~G 99 (289)
T PRK07896 80 DRVEDGARVPPGQALLTVTA 99 (289)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 279
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=24.26 E-value=54 Score=31.45 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 89 ~~~~dG~~v~~G~~i~~i~G 108 (296)
T PRK09016 89 WHVDDGDVITANQTLFELTG 108 (296)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 280
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.13 E-value=56 Score=31.09 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 74 ~~~~dG~~v~~g~~i~~i~G 93 (281)
T PRK06106 74 RHLPDGAAVAPGDVIATISG 93 (281)
T ss_pred EEeCCCCEEcCCCEEEEEEE
Confidence 88999999999999999975
No 281
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=24.07 E-value=2e+02 Score=25.36 Aligned_cols=71 Identities=17% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEe--------------cCC-eEEEEEccc---eeeEEecCCCeEEEEEec
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQ--------------KGQ-VLCIIEAMK---LMNEIEADRSGTIVEIIA 260 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~--------------kGq-vL~~IEamK---~~~eI~Ap~sG~V~~IlV 260 (277)
+....++|+.|++.. ...-.|+... .++ .++.|+... ++.+|-+-.-|.|.-..-
T Consensus 80 DyHr~haPv~G~v~~-------~~~i~G~~~~v~~~~~~~~~~~~~~NeR~~~~i~~~~G~v~~v~Vga~~v~~I~~~~~ 152 (202)
T PF02666_consen 80 DYHRNHAPVDGRVEE-------VRYIPGKLLPVNPPALSHIPGLFAENERVVLVIETKFGKVAVVQVGALLVGSIVLTVD 152 (202)
T ss_pred cceEEEecCCEEEEE-------EEEECccccccChHHhhccCCeeEEeeEEEEEEEECCCEEEEEEeccceeceeEEEec
Confidence 566899999999987 3333343321 233 445666432 445566767777763332
Q ss_pred -CCCCccCCCCeEEEEc
Q 023761 261 -EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 261 -e~Gd~V~~GqpL~~Ie 276 (277)
+.|+.|..|+-|..++
T Consensus 153 ~~~g~~v~kG~e~G~f~ 169 (202)
T PF02666_consen 153 PKEGDEVKKGEELGYFR 169 (202)
T ss_pred ccCCCEEecCcEeCEEe
Confidence 5899999999887764
No 282
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.01 E-value=60 Score=30.75 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.++.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G 81 (278)
T PRK08385 62 VRKRDGEEVKAGEVILELKG 81 (278)
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 283
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=22.54 E-value=82 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 250 DRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 250 p~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
..-|.|.-+.. +.|+.|..|++|+.|+
T Consensus 27 ~~lG~i~~v~lp~~G~~V~~g~~i~~IE 54 (110)
T TIGR03077 27 ENLGNILHIDLPSVGSSCKEGEVLVILE 54 (110)
T ss_pred HhcCCEEEEECCCCCCEEcCCCEEEEEE
Confidence 34477777766 6699999999999986
No 284
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=22.50 E-value=77 Score=32.09 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
.+++.||.|++|++|+.|=+
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 45899999999999999866
No 285
>PLN02964 phosphatidylserine decarboxylase
Probab=22.29 E-value=87 Score=33.25 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
..|.+-++|.+.. .+++|+.|++||.++..+-+
T Consensus 555 v~VGA~~VgsI~~--------~~~~g~~v~KGdE~G~F~fG 587 (644)
T PLN02964 555 VAIGATMVGSITF--------VKKEGDHVKKGDELGYFSFG 587 (644)
T ss_pred EEEeeeEeeEEEE--------EecCCCEEccCcEeeeeecC
Confidence 4677888888876 56889999999999999875
No 286
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=22.06 E-value=90 Score=29.87 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEecCCCCccCCCCeEEEEc
Q 023761 254 TIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 254 ~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.-..+++++|+.|..|+.|++++
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEe
Confidence 44567999999999999999985
No 287
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=21.77 E-value=2.5e+02 Score=21.09 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=34.5
Q ss_pred ccEEEEecCCCCCCCcccCCCEEec--CCeEEEEEcccee-eEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQK--GQVLCIIEAMKLM-NEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~k--GqvL~~IEamK~~-~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
..|++.. =.+++||+|.- ....+.|..+.+. .++..=..|--..+.+.+.+.|..|+.|.
T Consensus 18 v~Gkv~~-------G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl~ 80 (81)
T cd03695 18 YAGTIAS-------GSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVIV 80 (81)
T ss_pred EEEEEcc-------ceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEEe
Confidence 5777777 56777777622 2222333332211 22333345777777777767788888875
No 288
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=21.72 E-value=65 Score=30.50 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++|++|+.++.
T Consensus 64 ~~~~dG~~v~~g~~i~~~~G 83 (277)
T TIGR01334 64 YAVPSGSRALAGTLLLEAKG 83 (277)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 78999999999999999975
No 289
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=21.68 E-value=1.1e+02 Score=28.30 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=39.3
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcccee-eEEecCCCeEEEEEecCCCCccCCCCeEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-NEIEADRSGTIVEIIAEDRKPVSVDTPLF 273 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~-~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~ 273 (277)
..|.+-++|.+.. ++++|+.|++||.++.++-.+.- .-|..-.... +.-|+.+..|+++.
T Consensus 174 v~Vga~~v~~Iv~--------~~~~~~~v~~G~~~G~~~fGs~gstvip~~~~~~-----v~~~~~v~~g~tv~ 234 (239)
T COG0688 174 VQVAGLVARRIVC--------YVKEGDTVKKGERIGGIRFGSRGSTVLPLFAEPR-----VAVGERVVAGETVL 234 (239)
T ss_pred EEEhhheeeEEEE--------EecCCcEEEhhhhhhhhhhCCcccEEEecCCCce-----eeeccccccCceEE
Confidence 3666777788776 67789999999999999877322 2223333332 33566666666543
No 290
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=21.53 E-value=68 Score=29.99 Aligned_cols=20 Identities=45% Similarity=0.662 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 58 ~~~~dG~~v~~g~~i~~i~G 77 (265)
T TIGR00078 58 WLVKDGDRVEPGEVVAEVEG 77 (265)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 291
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=1.6e+02 Score=26.24 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=25.5
Q ss_pred EEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 237 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 237 ~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+|+-..-...+.+-.+ .++|+.|+.|..|+.|..+
T Consensus 199 ~i~H~~g~~t~Y~Hl~----~~~V~~G~~V~~G~~Ig~~ 233 (277)
T COG0739 199 IIKHGDGYVTVYAHLS----SILVKEGQKVKAGQVIGYV 233 (277)
T ss_pred EEEcCCceEeeehhhh----hhccCCCCEeccCCEEEEe
Confidence 3444444555555555 6899999999999999875
No 292
>COG0425 SirA Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=20.18 E-value=1.5e+02 Score=22.62 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHhhCCCcEEEEEeCCeEEEEEec
Q 023761 105 EFISQVSSLIKLVDSRDIVELQLKQLDCELIIRKK 139 (277)
Q Consensus 105 ~~i~eI~eLik~vd~s~I~ELelk~~~~~L~IrK~ 139 (277)
...++|...++......+.+.+-..+.+++.|+|.
T Consensus 43 ~~~~dIp~~~~~~~~~~ll~~e~~~~~~~~~Ikk~ 77 (78)
T COG0425 43 AAKEDIPAWAKKEGGHELLEVEQEGGVYRILIKKG 77 (78)
T ss_pred chHHHHHHHHHHcCCcEEEEEEecCCcEEEEEEec
Confidence 44566777666555455666666666788888874
Done!