Query 023761
Match_columns 277
No_of_seqs 276 out of 2175
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1bdo_A Acetyl-COA carboxylase; 99.7 1E-16 3.6E-21 120.1 9.9 76 201-276 5-80 (80)
2 1z6h_A Biotin/lipoyl attachmen 99.6 2.2E-15 7.5E-20 110.0 9.0 69 202-277 1-69 (72)
3 2kcc_A Acetyl-COA carboxylase 99.6 1.5E-15 5.1E-20 115.8 7.4 69 201-277 6-74 (84)
4 1ghj_A E2, E2, the dihydrolipo 99.6 9E-15 3.1E-19 109.4 9.1 66 205-277 12-77 (79)
5 1dcz_A Transcarboxylase 1.3S s 99.6 1.2E-14 4E-19 107.6 9.4 71 199-276 7-77 (77)
6 2dn8_A Acetyl-COA carboxylase 99.6 1E-14 3.5E-19 114.4 9.3 69 201-277 18-86 (100)
7 2d5d_A Methylmalonyl-COA decar 99.6 1.4E-14 4.9E-19 105.8 9.2 69 201-276 6-74 (74)
8 3crk_C Dihydrolipoyllysine-res 99.6 1E-14 3.5E-19 111.6 8.5 64 206-276 17-81 (87)
9 2l5t_A Lipoamide acyltransfera 99.5 1.7E-14 5.7E-19 107.3 7.5 65 205-276 12-76 (77)
10 1k8m_A E2 component of branche 99.5 1.8E-14 6.2E-19 112.1 7.6 64 207-277 17-80 (93)
11 2dnc_A Pyruvate dehydrogenase 99.5 2.1E-14 7.1E-19 113.0 7.5 64 207-277 20-84 (98)
12 2dne_A Dihydrolipoyllysine-res 99.5 3.7E-14 1.3E-18 113.6 8.3 63 207-276 20-83 (108)
13 3n6r_A Propionyl-COA carboxyla 99.5 3.5E-14 1.2E-18 144.4 10.0 71 199-276 611-681 (681)
14 2ejm_A Methylcrotonoyl-COA car 99.5 5.4E-14 1.8E-18 110.2 8.7 71 200-277 14-84 (99)
15 2jku_A Propionyl-COA carboxyla 99.5 6.5E-15 2.2E-19 114.6 2.5 70 200-276 25-94 (94)
16 1qjo_A Dihydrolipoamide acetyl 99.5 6.4E-14 2.2E-18 104.6 7.8 63 208-277 14-76 (80)
17 2k7v_A Dihydrolipoyllysine-res 99.5 5.6E-15 1.9E-19 112.4 1.9 69 202-277 4-72 (85)
18 1gjx_A Pyruvate dehydrogenase; 99.5 1.7E-14 5.7E-19 108.3 3.6 69 202-277 9-77 (81)
19 1y8o_B Dihydrolipoyllysine-res 99.5 1.3E-13 4.3E-18 114.1 8.5 63 207-276 40-103 (128)
20 3va7_A KLLA0E08119P; carboxyla 99.4 1.7E-13 5.7E-18 147.5 10.1 71 198-275 1165-1235(1236)
21 3hbl_A Pyruvate carboxylase; T 99.4 2E-13 6.9E-18 145.9 10.0 73 198-277 1075-1147(1150)
22 1iyu_A E2P, dihydrolipoamide a 99.4 1.9E-13 6.5E-18 102.1 6.7 61 210-277 14-74 (79)
23 1pmr_A Dihydrolipoyl succinylt 99.4 9.8E-15 3.4E-19 109.7 -0.8 64 207-277 15-78 (80)
24 3u9t_A MCC alpha, methylcroton 99.4 4.2E-14 1.4E-18 143.7 0.1 70 201-277 603-672 (675)
25 3bg3_A Pyruvate carboxylase, m 99.2 2.1E-12 7.3E-17 132.3 3.5 70 200-276 649-718 (718)
26 1zko_A Glycine cleavage system 99.2 1.4E-12 4.7E-17 109.1 1.4 69 202-277 38-114 (136)
27 2qf7_A Pyruvate carboxylase pr 99.2 6.5E-12 2.2E-16 134.5 5.5 70 200-276 1095-1164(1165)
28 2k32_A A; NMR {Campylobacter j 99.2 2.7E-11 9.2E-16 96.2 5.8 69 202-277 3-101 (116)
29 3dva_I Dihydrolipoyllysine-res 99.1 4.1E-12 1.4E-16 123.2 0.0 62 208-276 16-77 (428)
30 1zy8_K Pyruvate dehydrogenase 99.1 5.2E-12 1.8E-16 113.5 0.0 63 207-276 16-79 (229)
31 1hpc_A H protein of the glycin 98.8 1.8E-09 6.2E-14 89.5 3.8 68 203-277 30-105 (131)
32 3a7l_A H-protein, glycine clea 98.8 3E-09 1E-13 87.8 4.3 68 203-277 31-106 (128)
33 1onl_A Glycine cleavage system 98.8 3.7E-09 1.3E-13 87.3 4.2 54 224-277 45-105 (128)
34 3lnn_A Membrane fusion protein 98.6 9.5E-08 3.3E-12 88.1 7.8 71 199-276 56-203 (359)
35 2f1m_A Acriflavine resistance 98.5 3.9E-08 1.3E-12 87.7 2.8 69 201-276 23-164 (277)
36 3ne5_B Cation efflux system pr 98.5 2E-07 6.7E-12 88.9 7.8 70 200-276 121-239 (413)
37 3fpp_A Macrolide-specific effl 98.5 1.4E-07 4.9E-12 86.3 6.4 71 199-276 30-188 (341)
38 1vf7_A Multidrug resistance pr 98.3 2.1E-07 7.2E-12 87.0 4.1 71 199-276 42-171 (369)
39 3klr_A Glycine cleavage system 98.1 1.9E-06 6.4E-11 71.0 5.0 53 224-276 41-100 (125)
40 4dk0_A Putative MACA; alpha-ha 98.1 1.9E-07 6.4E-12 86.3 -2.3 70 199-275 31-188 (369)
41 3mxu_A Glycine cleavage system 98.0 7.4E-06 2.5E-10 68.9 6.1 54 224-277 63-123 (143)
42 3na6_A Succinylglutamate desuc 98.0 2.5E-05 8.7E-10 72.9 9.9 68 199-276 256-327 (331)
43 3tzu_A GCVH, glycine cleavage 97.9 9.1E-06 3.1E-10 67.9 4.3 53 224-276 58-117 (137)
44 3cdx_A Succinylglutamatedesucc 97.8 7.3E-05 2.5E-09 70.2 9.3 68 199-276 266-337 (354)
45 3fmc_A Putative succinylglutam 97.7 7.4E-05 2.5E-09 70.9 8.0 67 199-275 289-361 (368)
46 2dn8_A Acetyl-COA carboxylase 97.6 2.9E-05 9.9E-10 60.3 2.4 45 232-276 5-49 (100)
47 3hgb_A Glycine cleavage system 97.5 7.5E-05 2.6E-09 63.6 5.0 54 224-277 68-128 (155)
48 1ax3_A Iiaglc, glucose permeas 97.5 0.00012 4.2E-09 62.5 5.6 64 202-276 14-116 (162)
49 1f3z_A EIIA-GLC, glucose-speci 97.4 0.00016 5.4E-09 61.8 5.8 65 201-276 13-116 (161)
50 2gpr_A Glucose-permease IIA co 97.4 0.00018 6.3E-09 60.9 5.8 64 202-276 9-111 (154)
51 2qj8_A MLR6093 protein; struct 97.1 0.0017 6E-08 60.0 8.7 65 201-275 258-326 (332)
52 1z6h_A Biotin/lipoyl attachmen 96.9 0.00085 2.9E-08 47.9 4.0 31 246-276 1-31 (72)
53 2d5d_A Methylmalonyl-COA decar 96.8 0.0013 4.5E-08 47.0 4.4 32 245-276 6-37 (74)
54 1dcz_A Transcarboxylase 1.3S s 96.6 0.0017 5.8E-08 47.0 4.1 33 244-276 8-40 (77)
55 2kcc_A Acetyl-COA carboxylase 96.5 0.0013 4.6E-08 49.2 2.9 32 245-276 6-37 (84)
56 2xha_A NUSG, transcription ant 96.5 0.0026 8.8E-08 55.9 4.9 52 216-273 18-98 (193)
57 2jku_A Propionyl-COA carboxyla 96.1 0.0038 1.3E-07 47.7 3.3 33 244-276 25-57 (94)
58 2l5t_A Lipoamide acyltransfera 96.0 0.0063 2.1E-07 44.2 4.2 33 201-240 45-77 (77)
59 2ejm_A Methylcrotonoyl-COA car 96.0 0.0042 1.4E-07 47.9 3.4 33 244-276 14-46 (99)
60 1bdo_A Acetyl-COA carboxylase; 96.0 0.0054 1.8E-07 44.9 3.6 32 201-239 49-80 (80)
61 3fpp_A Macrolide-specific effl 95.9 0.0075 2.6E-07 54.8 5.0 54 223-277 11-64 (341)
62 3lnn_A Membrane fusion protein 95.9 0.0053 1.8E-07 56.2 3.9 55 223-277 35-90 (359)
63 1qjo_A Dihydrolipoamide acetyl 95.8 0.0061 2.1E-07 44.5 3.4 34 200-240 43-76 (80)
64 2xhc_A Transcription antitermi 95.8 0.0077 2.6E-07 57.1 5.0 51 217-273 59-138 (352)
65 1iyu_A E2P, dihydrolipoamide a 95.5 0.012 4.1E-07 43.0 3.8 34 201-241 42-75 (79)
66 3our_B EIIA, phosphotransferas 95.4 0.019 6.4E-07 50.0 5.5 65 201-276 35-138 (183)
67 1ghj_A E2, E2, the dihydrolipo 95.3 0.013 4.6E-07 42.7 3.6 33 201-240 45-77 (79)
68 1vf7_A Multidrug resistance pr 95.2 0.011 3.7E-07 55.0 3.6 43 234-277 34-76 (369)
69 2gpr_A Glucose-permease IIA co 95.2 0.013 4.4E-07 49.5 3.5 73 201-276 45-154 (154)
70 1k8m_A E2 component of branche 94.9 0.026 8.9E-07 43.1 4.2 33 201-240 48-80 (93)
71 1gjx_A Pyruvate dehydrogenase; 94.9 0.021 7.3E-07 41.7 3.6 30 247-276 10-39 (81)
72 4dk0_A Putative MACA; alpha-ha 94.7 0.013 4.5E-07 53.6 2.5 54 223-277 12-65 (369)
73 2k7v_A Dihydrolipoyllysine-res 94.6 0.011 3.7E-07 44.1 1.4 35 200-241 39-73 (85)
74 3crk_C Dihydrolipoyllysine-res 94.6 0.031 1.1E-06 41.8 3.9 33 201-240 49-82 (87)
75 3ne5_B Cation efflux system pr 94.5 0.035 1.2E-06 52.6 5.0 54 223-276 99-154 (413)
76 1pmr_A Dihydrolipoyl succinylt 94.3 0.014 4.7E-07 42.9 1.4 34 200-240 45-78 (80)
77 2xha_A NUSG, transcription ant 94.3 0.018 6.2E-07 50.5 2.3 51 217-273 77-157 (193)
78 3d4r_A Domain of unknown funct 94.1 0.05 1.7E-06 46.7 4.7 51 206-263 106-157 (169)
79 2auk_A DNA-directed RNA polyme 94.0 0.06 2.1E-06 46.6 5.0 48 216-265 59-106 (190)
80 1ax3_A Iiaglc, glucose permeas 94.0 0.043 1.5E-06 46.7 4.0 40 201-240 50-117 (162)
81 2dnc_A Pyruvate dehydrogenase 93.8 0.048 1.6E-06 42.1 3.7 34 201-241 51-85 (98)
82 2dne_A Dihydrolipoyllysine-res 93.7 0.055 1.9E-06 42.5 3.9 34 201-241 51-85 (108)
83 1f3z_A EIIA-GLC, glucose-speci 93.2 0.089 3E-06 44.7 4.7 40 201-240 50-117 (161)
84 1y8o_B Dihydrolipoyllysine-res 92.9 0.075 2.6E-06 43.4 3.6 35 201-242 71-106 (128)
85 2k32_A A; NMR {Campylobacter j 92.7 0.074 2.5E-06 41.3 3.2 36 200-242 67-103 (116)
86 3n6r_A Propionyl-COA carboxyla 92.3 0.1 3.5E-06 53.0 4.4 33 244-276 612-644 (681)
87 2bco_A Succinylglutamate desuc 92.1 0.14 4.9E-06 47.7 4.9 62 202-275 265-326 (350)
88 3lu0_D DNA-directed RNA polyme 90.3 0.19 6.5E-06 54.9 4.3 37 218-256 1000-1036(1407)
89 2xhc_A Transcription antitermi 89.7 0.074 2.5E-06 50.3 0.5 50 218-273 118-197 (352)
90 3bg3_A Pyruvate carboxylase, m 89.6 0.22 7.7E-06 51.1 3.9 32 245-276 650-681 (718)
91 3our_B EIIA, phosphotransferas 89.2 0.43 1.5E-05 41.4 4.9 21 221-241 120-140 (183)
92 3hbl_A Pyruvate carboxylase; T 88.9 0.29 9.9E-06 52.7 4.3 33 244-276 1077-1109(1150)
93 3va7_A KLLA0E08119P; carboxyla 88.3 0.34 1.2E-05 52.6 4.4 32 245-276 1168-1199(1236)
94 3u9t_A MCC alpha, methylcroton 87.8 0.1 3.5E-06 52.9 0.0 32 245-276 603-634 (675)
95 2qf7_A Pyruvate carboxylase pr 86.4 0.49 1.7E-05 51.0 4.3 32 245-276 1096-1127(1165)
96 2f1m_A Acriflavine resistance 84.6 0.76 2.6E-05 40.2 4.0 34 200-240 130-165 (277)
97 3dva_I Dihydrolipoyllysine-res 82.9 0.24 8.3E-06 47.7 0.0 35 201-242 46-80 (428)
98 1zy8_K Pyruvate dehydrogenase 81.8 0.28 9.5E-06 43.6 0.0 33 201-240 47-80 (229)
99 3lu0_D DNA-directed RNA polyme 77.3 1.1 3.7E-05 49.2 2.7 23 216-238 1102-1124(1407)
100 3fmc_A Putative succinylglutam 71.9 3.4 0.00012 38.8 4.4 33 243-276 289-321 (368)
101 1uou_A Thymidine phosphorylase 67.4 5.7 0.0002 38.9 5.0 39 238-276 366-433 (474)
102 3it5_A Protease LASA; metallop 66.4 3.4 0.00012 35.2 2.8 21 220-240 84-104 (182)
103 3na6_A Succinylglutamate desuc 65.5 5 0.00017 36.9 4.0 33 243-276 256-288 (331)
104 3cdx_A Succinylglutamatedesucc 63.7 6.9 0.00024 36.2 4.6 34 242-276 265-298 (354)
105 1brw_A PYNP, protein (pyrimidi 62.7 7.8 0.00027 37.5 4.9 20 257-276 379-398 (433)
106 3h5q_A PYNP, pyrimidine-nucleo 60.8 8.8 0.0003 37.2 4.9 20 257-276 382-401 (436)
107 2dsj_A Pyrimidine-nucleoside ( 58.6 9 0.00031 37.0 4.5 20 257-276 371-390 (423)
108 3tuf_B Stage II sporulation pr 58.1 4.6 0.00016 36.2 2.2 21 221-241 135-155 (245)
109 1yw4_A Succinylglutamate desuc 56.0 1.7 5.9E-05 40.2 -1.0 36 221-256 277-317 (341)
110 3csq_A Morphogenesis protein 1 55.1 5.6 0.00019 36.7 2.4 21 220-240 250-270 (334)
111 3it5_A Protease LASA; metallop 53.9 15 0.0005 31.2 4.6 54 201-275 49-102 (182)
112 2tpt_A Thymidine phosphorylase 53.7 6.9 0.00024 37.9 2.8 38 239-276 335-403 (440)
113 2hsi_A Putative peptidase M23; 52.9 6.2 0.00021 35.9 2.2 20 221-240 232-251 (282)
114 1qwy_A Peptidoglycan hydrolase 51.4 6.8 0.00023 36.1 2.2 20 221-240 239-258 (291)
115 3nyy_A Putative glycyl-glycine 49.8 7.3 0.00025 34.9 2.1 19 222-240 183-201 (252)
116 2auk_A DNA-directed RNA polyme 48.4 9.4 0.00032 32.7 2.5 24 216-239 163-186 (190)
117 3tuf_B Stage II sporulation pr 47.7 20 0.00069 31.9 4.7 58 202-275 95-152 (245)
118 1zko_A Glycine cleavage system 47.0 11 0.00037 30.8 2.6 31 246-276 38-69 (136)
119 3vr4_A V-type sodium ATPase ca 46.8 30 0.001 34.9 6.2 42 222-265 130-174 (600)
120 2gu1_A Zinc peptidase; alpha/b 46.4 8.9 0.0003 35.6 2.2 20 221-240 284-303 (361)
121 1hpc_A H protein of the glycin 44.0 12 0.00039 30.4 2.3 32 245-276 28-60 (131)
122 2qj8_A MLR6093 protein; struct 42.9 20 0.00069 32.5 4.0 31 245-276 258-288 (332)
123 1brw_A PYNP, protein (pyrimidi 41.8 18 0.00062 34.9 3.7 22 221-242 380-401 (433)
124 2dsj_A Pyrimidine-nucleoside ( 41.6 18 0.00063 34.8 3.7 21 221-241 372-392 (423)
125 3h5q_A PYNP, pyrimidine-nucleo 40.3 20 0.00068 34.7 3.7 19 221-239 383-401 (436)
126 1uou_A Thymidine phosphorylase 39.3 21 0.00072 34.9 3.7 22 220-241 414-435 (474)
127 1onl_A Glycine cleavage system 39.1 17 0.00058 29.2 2.6 32 245-276 28-60 (128)
128 2lmc_B DNA-directed RNA polyme 39.1 9.7 0.00033 28.8 1.0 21 216-236 62-82 (84)
129 3d4r_A Domain of unknown funct 38.8 22 0.00075 30.4 3.3 41 225-276 92-132 (169)
130 3a7l_A H-protein, glycine clea 38.4 18 0.00061 29.1 2.6 30 247-276 31-61 (128)
131 1o4u_A Type II quinolic acid p 37.9 16 0.00053 33.4 2.4 20 221-240 75-94 (285)
132 1x1o_A Nicotinate-nucleotide p 37.6 17 0.00057 33.1 2.6 20 221-240 76-95 (286)
133 1qpo_A Quinolinate acid phosph 35.9 17 0.00058 33.0 2.3 20 221-240 75-94 (284)
134 3tqv_A Nicotinate-nucleotide p 34.9 20 0.00067 32.9 2.6 20 221-240 79-98 (287)
135 2tpt_A Thymidine phosphorylase 33.8 15 0.00051 35.6 1.6 21 221-241 385-405 (440)
136 3l0g_A Nicotinate-nucleotide p 33.8 21 0.00071 33.0 2.5 20 221-240 88-107 (300)
137 2hsi_A Putative peptidase M23; 33.7 37 0.0013 30.8 4.2 59 201-275 191-249 (282)
138 3nyy_A Putative glycyl-glycine 33.6 39 0.0013 30.1 4.2 58 202-275 141-199 (252)
139 3gnn_A Nicotinate-nucleotide p 29.9 27 0.00091 32.2 2.6 20 221-240 90-109 (298)
140 3paj_A Nicotinate-nucleotide p 29.2 28 0.00094 32.4 2.6 20 221-240 112-131 (320)
141 2b7n_A Probable nicotinate-nuc 28.1 28 0.00095 31.2 2.3 20 221-240 62-81 (273)
142 1qap_A Quinolinic acid phospho 28.0 30 0.001 31.5 2.6 20 221-240 89-108 (296)
143 1qwy_A Peptidoglycan hydrolase 25.3 71 0.0024 29.3 4.5 20 256-275 237-256 (291)
144 2jbm_A Nicotinate-nucleotide p 24.8 33 0.0011 31.2 2.2 20 221-240 75-94 (299)
145 2gu1_A Zinc peptidase; alpha/b 24.1 83 0.0028 29.0 4.9 35 237-275 267-301 (361)
146 1yw6_A Succinylglutamate desuc 23.5 33 0.0011 31.3 1.9 34 221-254 275-313 (335)
147 3gqb_A V-type ATP synthase alp 21.5 1.2E+02 0.0042 30.4 5.7 37 222-258 122-160 (578)
148 1qpo_A Quinolinate acid phosph 21.3 65 0.0022 29.1 3.4 24 253-276 70-93 (284)
No 1
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.69 E-value=1e-16 Score=120.09 Aligned_cols=76 Identities=53% Similarity=0.976 Sum_probs=73.1
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|++|+.|++++.+.+...|++++||.|++||+|+.||+||+..+|+||++|+|.++++++|+.|..|++|++|+
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 3699999999999888899999999999999999999999999999999999999999999999999999999985
No 2
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.61 E-value=2.2e-15 Score=110.00 Aligned_cols=69 Identities=33% Similarity=0.529 Sum_probs=66.3
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.|+||+.|++.+ |++++||.|++||+|+.||++++..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 1 TVSIQMAGNLWK-------VHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp CEECCSSEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred CEECcccEEEEE-------EEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 378999999999 999999999999999999999999999999999999999999999999999999863
No 3
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=115.85 Aligned_cols=69 Identities=20% Similarity=0.294 Sum_probs=66.3
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|.||+.|++++ |+|++||.|++||+||.||+||+..+|+||++|+|.+++ +.|+.|..|++|++|.+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 6 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLEL 74 (84)
T ss_dssp TEECCSSSCCEEE-------ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEEC
T ss_pred ceEECCCCEEEEE-------EECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeC
Confidence 3699999999999 999999999999999999999999999999999999999 99999999999999863
No 4
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.57 E-value=9e-15 Score=109.40 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=63.1
Q ss_pred CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
+++.|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 12 ~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 12 SIADGTVAT-------WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCSCEEECC-------CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCCCEEEEE-------EEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 357999999 999999999999999999999999999999999999999999999999999999864
No 5
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.56 E-value=1.2e-14 Score=107.57 Aligned_cols=71 Identities=32% Similarity=0.523 Sum_probs=67.8
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...|.+|+.|++.+ |++++||.|++||+|+.|+.+++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 7 ~~~~v~a~~~G~v~~-------~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 7 GEGEIPAPLAGTVSK-------ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp CSSEEEBSSSCEEEE-------ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCeEEECCCCEEEEE-------EEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999985
No 6
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1e-14 Score=114.41 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=66.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|.+|+.|++.+ |+|++||.|++||+|+.||+||+..+|+||++|+|. ++++.|+.|..|++|++|.+
T Consensus 18 ~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 18 TVLRSPSAGKLTQ-------YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLEL 86 (100)
T ss_dssp TEEECSSCEEEEE-------ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECC
T ss_pred cEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEc
Confidence 4799999999999 999999999999999999999999999999999999 99999999999999999863
No 7
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.56 E-value=1.4e-14 Score=105.79 Aligned_cols=69 Identities=38% Similarity=0.647 Sum_probs=66.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.+|+.|++.+ |++++||.|++||+|+.|+.+++..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 6 ~~v~a~~~G~v~~-------~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 6 NVVSAPMPGKVLR-------VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp CEEECSSCEEEEE-------ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred eEEecCCCEEEEE-------EEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 4699999999999 99999999999999999999999999999999999999999999999999999985
No 8
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.55 E-value=1e-14 Score=111.58 Aligned_cols=64 Identities=28% Similarity=0.400 Sum_probs=61.8
Q ss_pred CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761 206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 276 (277)
Q Consensus 206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie 276 (277)
...|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|+
T Consensus 17 ~~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 17 MTMGTVQR-------WEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcEEEEE-------EEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 36899999 99999999999999999999999999999999999999999999 899999999986
No 9
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.53 E-value=1.7e-14 Score=107.27 Aligned_cols=65 Identities=31% Similarity=0.343 Sum_probs=62.9
Q ss_pred CCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 205 CPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 205 APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+++.|++.+ |+|++||.|++||+||.||++|+..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 12 ~~~~G~v~~-------~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 12 GVTEGEIVR-------WDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp SCCCEEEEE-------CSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred CCccEEEEE-------EEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 468999999 99999999999999999999999999999999999999999999999999999986
No 10
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.52 E-value=1.8e-14 Score=112.13 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=61.9
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|++.+ |+|++||.|++||+||.||+||+.++|+||++|+|.+++++.|+.|..|++|++|++
T Consensus 17 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 17 REVTVKE-------WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEEE-------ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCEEEEE-------EEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 6899999 999999999999999999999999999999999999999999999999999999863
No 11
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=112.99 Aligned_cols=64 Identities=23% Similarity=0.384 Sum_probs=61.6
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCcc-CCCCeEEEEcC
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV-SVDTPLFVIEP 277 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V-~~GqpL~~Iep 277 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+.| ..|++|++|++
T Consensus 20 ~~G~i~~-------~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~ 84 (98)
T 2dnc_A 20 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVE 84 (98)
T ss_dssp SEECEEE-------ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEEC
T ss_pred ccEEEEE-------EEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEec
Confidence 5899999 9999999999999999999999999999999999999999999999 99999999863
No 12
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=113.58 Aligned_cols=63 Identities=21% Similarity=0.288 Sum_probs=61.2
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+++++.|+ .|..|++|++|.
T Consensus 20 ~~G~v~~-------~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~ 83 (108)
T 2dne_A 20 QAGTIAR-------WEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITV 83 (108)
T ss_dssp CEEEEEE-------CSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5899999 99999999999999999999999999999999999999999999 899999999986
No 13
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.50 E-value=3.5e-14 Score=144.39 Aligned_cols=71 Identities=38% Similarity=0.623 Sum_probs=68.2
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+...|+|||+|++++ |+|++||.|++||+|++||+|||.++|+||.+|+|.++++++||.|..|++|++|+
T Consensus 611 ~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 611 TSKMLLCPMPGLIVK-------VDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CCSEEECCSCEEEEE-------ECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCCeEECCCcEEEEE-------EEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 345799999999999 99999999999999999999999999999999999999999999999999999985
No 14
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.50 E-value=5.4e-14 Score=110.22 Aligned_cols=71 Identities=31% Similarity=0.509 Sum_probs=67.9
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
...|.+|+.|++.+ |+|++||.|++||+|+.||.+|+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~ 84 (99)
T 2ejm_A 14 QGGPLAPMTGTIEK-------VFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84 (99)
T ss_dssp CSSCBCSSSEEEEE-------ECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECC
T ss_pred ceEEecCCCEEEEE-------EECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEEC
Confidence 45799999999999 999999999999999999999999999999999999999999999999999999863
No 15
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.49 E-value=6.5e-15 Score=114.60 Aligned_cols=70 Identities=34% Similarity=0.545 Sum_probs=32.2
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.+|+.|++.+ |++++||.|++||+|+.||++|+..+|+||++|+|.+++++.|+.|..|++|++|+
T Consensus 25 ~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 25 SSVLRSPMPGVVVA-------VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp CCCCCCSSSCEEEE-------ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred ceEEECCCCEEEEE-------EECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 34799999999999 99999999999999999999999999999999999999999999999999999885
No 16
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.49 E-value=6.4e-14 Score=104.63 Aligned_cols=63 Identities=25% Similarity=0.297 Sum_probs=61.3
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.|++.+ |+|++||.|++||+||.||++|+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~G~v~~-------~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 14 EVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEE-------CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEES
T ss_pred CEEEEE-------EEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEc
Confidence 899999 999999999999999999999999999999999999999999999999999999863
No 17
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.48 E-value=5.6e-15 Score=112.42 Aligned_cols=69 Identities=25% Similarity=0.300 Sum_probs=65.5
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.|+.|..|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 4 ~i~~p~~G~v~~-------~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~ 72 (85)
T 2k7v_A 4 EVNVPDIVEVTE-------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 72 (85)
T ss_dssp CCCCCSCCCCCS-------CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEEC
T ss_pred EEECCCeEEEEE-------EEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 477888899999 999999999999999999999999999999999999999999999999999999863
No 18
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.47 E-value=1.7e-14 Score=108.25 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=65.4
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.+.+++.|++.+ |++++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 9 ~~g~~~~G~i~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 9 DIGGHENVDIIA-------VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEA 77 (81)
T ss_dssp CCSSCSSEEEEE-------ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECC
T ss_pred CCCCCCcEEEEE-------EEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEe
Confidence 355689999999 999999999999999999999999999999999999999999999999999999864
No 19
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.46 E-value=1.3e-13 Score=114.15 Aligned_cols=63 Identities=30% Similarity=0.440 Sum_probs=61.0
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC-ccCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK-PVSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd-~V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .|..|++|++|+
T Consensus 40 ~~G~V~~-------~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~ 103 (128)
T 1y8o_B 40 TMGTVQR-------WEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 103 (128)
T ss_dssp SEEEEEE-------ECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEE
T ss_pred ccEEEEE-------EecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEe
Confidence 5799999 99999999999999999999999999999999999999999998 899999999986
No 20
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.44 E-value=1.7e-13 Score=147.47 Aligned_cols=71 Identities=31% Similarity=0.470 Sum_probs=68.3
Q ss_pred CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.+...|+|||+|+|++ |+|++||.|++||+||+||+|||+++|+||++|+|.+|++++||.|.+|++|+.|
T Consensus 1165 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1165 DDAELLYSEYTGRFWK-------PVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp TTCEEEECSSCEEEEE-------ESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred CCCcEEeCCCcEEEEE-------EEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 3456899999999999 9999999999999999999999999999999999999999999999999999987
No 21
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.43 E-value=2e-13 Score=145.91 Aligned_cols=73 Identities=29% Similarity=0.382 Sum_probs=69.2
Q ss_pred CCCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 198 SSLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 198 ~~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
.+...|.|||.|++++ |+|++||.|++||+||+||+|||.++|+||++|+|.+|++++||.|..|++|+.|++
T Consensus 1075 ~~~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~ 1147 (1150)
T 3hbl_A 1075 SNPSHIGAQMPGSVTE-------VKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEK 1147 (1150)
T ss_dssp TCSSEEECSSSEEEEE-------ECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC-
T ss_pred CCCceeecCceEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEec
Confidence 3456899999999999 999999999999999999999999999999999999999999999999999999974
No 22
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.43 E-value=1.9e-13 Score=102.13 Aligned_cols=61 Identities=20% Similarity=0.338 Sum_probs=58.8
Q ss_pred EEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 210 TFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 210 ~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.+++++.|+.|..|++|++|.+
T Consensus 14 ~i~~-------~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 14 EVIE-------LLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74 (79)
T ss_dssp EEEE-------ECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEEC
T ss_pred EEEE-------EecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEec
Confidence 7888 999999999999999999999999999999999999999999999999999999864
No 23
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.42 E-value=9.8e-15 Score=109.75 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=61.7
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|++.+ |+|++||.|++||+||.||+||+..+|+||++|+|.++++++|+.|..|++|++|++
T Consensus 15 ~~G~v~~-------~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 15 ADATVAT-------WHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SCEECCB-------CCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred ccEEEEE-------EECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 6899999 999999999999999999999999999999999999999999999999999999864
No 24
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.38 E-value=4.2e-14 Score=143.66 Aligned_cols=70 Identities=30% Similarity=0.529 Sum_probs=0.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..|+|||+|++++ |+|++||.|++||+||+||+|||.++|+||++|+|.++++++||.|..|++|++|++
T Consensus 603 ~~v~ap~~G~v~~-------~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~~ 672 (675)
T 3u9t_A 603 GGLSAPMNGSIVR-------VLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGELVEEGTPLVELDE 672 (675)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CeEECCCCEEEEE-------EEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcCCcCCCCEEEEEec
Confidence 4799999999999 999999999999999999999999999999999999999999999999999999874
No 25
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=99.24 E-value=2.1e-12 Score=132.34 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=67.3
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.|||.|++.+ |+|++||.|++||+||+||+|||.++|+||++|+|.++++++|+.|..|++|++|+
T Consensus 649 ~~~v~ap~~G~V~~-------v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 649 KGQIGAPMPGKVID-------IKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp SSCEECSSCEEEEE-------ECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CceEeCCCCeEEEE-------EEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 34799999999999 99999999999999999999999999999999999999999999999999999874
No 26
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=99.23 E-value=1.4e-12 Score=109.05 Aligned_cols=69 Identities=28% Similarity=0.352 Sum_probs=59.5
Q ss_pred CccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEE---ecCCCCccC---CCC-eEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI---IAEDRKPVS---VDT-PLF 273 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~I---lVe~Gd~V~---~Gq-pL~ 273 (277)
.+.+|+.|.+.. ..+ ++||.|++||.||+||+||+.++|.||++|+|++| ++++|+.|+ ||+ .|+
T Consensus 38 ~~a~~~lG~i~~-------V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~ 110 (136)
T 1zko_A 38 NHAQEQLGDVVY-------VDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLF 110 (136)
T ss_dssp HHHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCE
T ss_pred hhhcccCCCcEE-------EEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEE
Confidence 345566665544 222 99999999999999999999999999999999999 889999999 998 999
Q ss_pred EEcC
Q 023761 274 VIEP 277 (277)
Q Consensus 274 ~Iep 277 (277)
+|++
T Consensus 111 ~i~~ 114 (136)
T 1zko_A 111 KMEI 114 (136)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 27
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.21 E-value=6.5e-12 Score=134.48 Aligned_cols=70 Identities=34% Similarity=0.540 Sum_probs=61.1
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.|||.|++++ |+|++||.|++||+||+||+|||.++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 1095 ~~~v~ap~~G~v~~-------~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1095 AAHVGAPMPGVISR-------VFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp TTEEECSSCEEEEE-------ECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CceeeCCCCeEEEE-------EEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 35799999999999 99999999999999999999999999999999999999999999999999999986
No 28
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=99.17 E-value=2.7e-11 Score=96.25 Aligned_cols=69 Identities=33% Similarity=0.412 Sum_probs=63.3
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcccee-----------------------------eEEecCCC
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLM-----------------------------NEIEADRS 252 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~-----------------------------~eI~Ap~s 252 (277)
.|.+++.|++.+ ++|++||.|++||+|+.|+..+.. ..|+||++
T Consensus 3 ~v~a~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~ 75 (116)
T 2k32_A 3 IIKPQVSGVIVN-------KLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFD 75 (116)
T ss_dssp EECCSSCEEEEE-------ECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSS
T ss_pred EEeCcCCEEEEE-------EECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCC
Confidence 588999999999 999999999999999999987544 48999999
Q ss_pred eEEEEEecCCCCccCCC-CeEEEEcC
Q 023761 253 GTIVEIIAEDRKPVSVD-TPLFVIEP 277 (277)
Q Consensus 253 G~V~~IlVe~Gd~V~~G-qpL~~Iep 277 (277)
|+|.++.++.|+.|..| ++|+.|.+
T Consensus 76 G~V~~~~~~~G~~v~~g~~~l~~i~~ 101 (116)
T 2k32_A 76 GTIGDALVNIGDYVSASTTELVRVTN 101 (116)
T ss_dssp EEECCCSCCTTCEECTTTSCCEEEEC
T ss_pred EEEEEEECCCCCEEcCCCcEEEEEEC
Confidence 99999999999999999 99999853
No 29
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=99.14 E-value=4.1e-12 Score=123.25 Aligned_cols=62 Identities=29% Similarity=0.516 Sum_probs=0.0
Q ss_pred cEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 208 AGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 208 ~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+|++++|+.|..|++|+.|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (428)
T 3dva_I 16 EGEIVK-------WFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLD 77 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cEEEEE-------EEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEe
Confidence 588888 99999999999999999999999999999999999999999999999999999985
No 30
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.13 E-value=5.2e-12 Score=113.53 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=0.0
Q ss_pred ccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc-cCCCCeEEEEc
Q 023761 207 MAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP-VSVDTPLFVIE 276 (277)
Q Consensus 207 m~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~-V~~GqpL~~Ie 276 (277)
..|++.+ |+|++||.|++||+||+||+||+.++|+||++|+|.+|+++.|+. |..|++|++|+
T Consensus 16 ~eG~I~~-------w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~~~V~~G~~l~~i~ 79 (229)
T 1zy8_K 16 EEGNIVK-------WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIV 79 (229)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcEEEEE-------EecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCCeeecCCCEEEEEe
Confidence 4688888 999999999999999999999999999999999999999999997 99999999885
No 31
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.82 E-value=1.8e-09 Score=89.54 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=55.8
Q ss_pred ccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 023761 203 LKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV 274 (277)
Q Consensus 203 I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V~---~Gq-pL~~ 274 (277)
+..++.|.+.. ..+ ++||.|++||.||+||+||+.++|.||++|+|++++. ++.+.|+ ||+ .||+
T Consensus 30 ~a~~~lG~i~~-------v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~ 102 (131)
T 1hpc_A 30 HAQDHLGEVVF-------VELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIK 102 (131)
T ss_dssp HHHHHHCSEEE-------EECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEE
T ss_pred hhcccCCCceE-------EEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEE
Confidence 44567776655 333 9999999999999999999999999999999999985 4555674 777 8998
Q ss_pred EcC
Q 023761 275 IEP 277 (277)
Q Consensus 275 Iep 277 (277)
|++
T Consensus 103 i~~ 105 (131)
T 1hpc_A 103 IKP 105 (131)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 32
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.79 E-value=3e-09 Score=87.82 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=56.2
Q ss_pred ccCCccEEEEecCCCCCCCc-ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCccC---CCC-eEEE
Q 023761 203 LKCPMAGTFYRSPAPGEPPF-VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPVS---VDT-PLFV 274 (277)
Q Consensus 203 I~APm~G~~~~sp~p~~~~~-VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V~---~Gq-pL~~ 274 (277)
+..++.|.+.. .. .++|+.|++||.||+||+||+.++|.||++|+|++++. ++.+.|+ ||+ .||+
T Consensus 31 ~a~~~lG~i~~-------v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~ 103 (128)
T 3a7l_A 31 HAQELLGDMVF-------VDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFK 103 (128)
T ss_dssp HHHHHHCSEEE-------EECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEE
T ss_pred HHhccCCceEE-------EEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEE
Confidence 44566666544 22 39999999999999999999999999999999999975 6677787 887 8998
Q ss_pred EcC
Q 023761 275 IEP 277 (277)
Q Consensus 275 Iep 277 (277)
|++
T Consensus 104 i~~ 106 (128)
T 3a7l_A 104 IKA 106 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 864
No 33
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.77 E-value=3.7e-09 Score=87.30 Aligned_cols=54 Identities=30% Similarity=0.496 Sum_probs=48.8
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEec---CCCCcc---CCCC-eEEEEcC
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIA---EDRKPV---SVDT-PLFVIEP 277 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlV---e~Gd~V---~~Gq-pL~~Iep 277 (277)
++||+|++||.||+||+||+.++|.||++|+|++++. ++.+.| .||+ .||+|++
T Consensus 45 ~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~~ 105 (128)
T 1onl_A 45 EVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKP 105 (128)
T ss_dssp CTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEE
T ss_pred CCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEEE
Confidence 9999999999999999999999999999999999975 566777 7887 9998863
No 34
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=98.57 E-value=9.5e-08 Score=88.08 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=63.8
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 243 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~----------------------------------- 243 (277)
....|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 56 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~ 128 (359)
T 3lnn_A 56 KLVKVLPPLAGRIVS-------LNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAK 128 (359)
T ss_dssp SEEEECCSSCEEEEE-------CCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCC
T ss_pred cEEEEeccCCEEEEE-------EEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 345799999999999 99999999999999999987542
Q ss_pred -----------------------------------------eeEEecCCCeEEEEEecCCCCccCC-CCeEEEEc
Q 023761 244 -----------------------------------------MNEIEADRSGTIVEIIAEDRKPVSV-DTPLFVIE 276 (277)
Q Consensus 244 -----------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~-GqpL~~Ie 276 (277)
...|+||++|+|..+.++.|+.|.. |++|++|.
T Consensus 129 ~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~ 203 (359)
T 3lnn_A 129 RDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVA 203 (359)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEe
Confidence 3579999999999999999999999 99999874
No 35
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=98.49 E-value=3.9e-08 Score=87.73 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=61.3
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-------------------------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL------------------------------------- 243 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~------------------------------------- 243 (277)
..|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 23 ~~v~a~~~G~V~~-------v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~ 95 (277)
T 2f1m_A 23 AEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYI 95 (277)
T ss_dssp EEECCSSCEEEEE-------ECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTC
T ss_pred EEEEccccEEEEE-------EEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 4799999999999 99999999999999999986321
Q ss_pred ----------------------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761 244 ----------------------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 276 (277)
Q Consensus 244 ----------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie 276 (277)
...|+||++|+|..+.++.|+.|..| ++|++|.
T Consensus 96 s~~~~~~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~ 164 (277)
T 2f1m_A 96 SKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQ 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEe
Confidence 24799999999999999999999999 5899874
No 36
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=98.49 E-value=2e-07 Score=88.94 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=62.4
Q ss_pred CCCccCCccEEEEecCCCCCCCcc-cCCCEEecCCeEEEEEcc-------------------------------------
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFV-KVGDRVQKGQVLCIIEAM------------------------------------- 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~V-kvGd~V~kGqvL~~IEam------------------------------------- 241 (277)
...|.++..|++.+ ++| ++||.|++||+|+.|+..
T Consensus 121 ~~~v~a~~~G~V~~-------v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~ 193 (413)
T 3ne5_B 121 YAIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEA 193 (413)
T ss_dssp EEEECCSSCEEEEE-------ECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHH
T ss_pred eEEEecccCEEEEE-------EEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHH
Confidence 35799999999999 998 999999999999999842
Q ss_pred -----------ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 242 -----------KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 242 -----------K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.....|+||++|+|.++.++.|+.|..|++|++|.
T Consensus 194 ~~~~l~~~~~~~~~~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~ 239 (413)
T 3ne5_B 194 DIRRLIATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 239 (413)
T ss_dssp HHHHHHHHTSCCCEEEEECSSSEEEEECCCCTTCEECTTSCSEEEE
T ss_pred HHHHHHHhccccccEEEEcCCCeEEEEEEcCCCCEECCCCcEEEEe
Confidence 12457999999999999999999999999999874
No 37
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=98.48 E-value=1.4e-07 Score=86.29 Aligned_cols=71 Identities=20% Similarity=0.330 Sum_probs=62.1
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 243 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~----------------------------------- 243 (277)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 30 ~~~~v~~~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 102 (341)
T 3fpp_A 30 RKVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQ 102 (341)
T ss_dssp SEEECCCSSCEEEEE-------ECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred EEEEEeccCCcEEEE-------EEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999 99999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 023761 244 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 271 (277)
Q Consensus 244 --------------------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp-- 271 (277)
...|+||++|+|.++.++.|+.|..|++
T Consensus 103 ~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 182 (341)
T 3fpp_A 103 QRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAP 182 (341)
T ss_dssp HHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCC
T ss_pred HHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCc
Confidence 1459999999999999999999999997
Q ss_pred -EEEEc
Q 023761 272 -LFVIE 276 (277)
Q Consensus 272 -L~~Ie 276 (277)
|+.|.
T Consensus 183 ~l~~i~ 188 (341)
T 3fpp_A 183 NILTLA 188 (341)
T ss_dssp CCEEEE
T ss_pred eEEEEe
Confidence 88763
No 38
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=98.35 E-value=2.1e-07 Score=87.00 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=62.3
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 243 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~----------------------------------- 243 (277)
....|.+++.|++.. ++|++||.|++||+|+.|+...+
T Consensus 42 ~~~~v~a~v~G~V~~-------v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~ 114 (369)
T 1vf7_A 42 RIAEVRPQVNGIILK-------RLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQY 114 (369)
T ss_dssp CEEEECCSSCEEEEE-------CCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHH
T ss_pred eEEEEEeeCceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 345799999999999 99999999999999999976321
Q ss_pred ----------------------eeEEecCCCeEEEEEecCCCCccCCC--CeEEEEc
Q 023761 244 ----------------------MNEIEADRSGTIVEIIAEDRKPVSVD--TPLFVIE 276 (277)
Q Consensus 244 ----------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~G--qpL~~Ie 276 (277)
...|+||++|+|.++.++.|+.|..| ++|++|.
T Consensus 115 ~~a~~~~~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~ 171 (369)
T 1vf7_A 115 ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQ 171 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEe
Confidence 24799999999999999999999995 8999874
No 39
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=98.15 E-value=1.9e-06 Score=71.03 Aligned_cols=53 Identities=23% Similarity=0.303 Sum_probs=44.7
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---ccC---CCC-eEEEEc
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PVS---VDT-PLFVIE 276 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V~---~Gq-pL~~Ie 276 (277)
++|+.|++||.+|.||++|+..+|.||++|+|++++.+-.+ .|. ||+ -|++|+
T Consensus 41 ~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~ki~ 100 (125)
T 3klr_A 41 EVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMT 100 (125)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCEEEE
T ss_pred CCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEEEEE
Confidence 89999999999999999999999999999999999765444 333 664 577765
No 40
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=98.09 E-value=1.9e-07 Score=86.28 Aligned_cols=70 Identities=19% Similarity=0.406 Sum_probs=60.9
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccce-----------------------------------
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKL----------------------------------- 243 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~----------------------------------- 243 (277)
....|.++..|++.. ++|++||.|++||+|+.|+...+
T Consensus 31 ~~~~v~~~~~G~V~~-------v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~ 103 (369)
T 4dk0_A 31 NTVDVGAQVSGKITK-------LYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRL 103 (369)
T ss_dssp SCCCBCCCSCSBCCE-------ECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred eeEEEecCCCcEEEE-------EEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999 99999999999999999986421
Q ss_pred --------------------------------------------------eeEEecCCCeEEEEEecCCCCccCCCCe--
Q 023761 244 --------------------------------------------------MNEIEADRSGTIVEIIAEDRKPVSVDTP-- 271 (277)
Q Consensus 244 --------------------------------------------------~~eI~Ap~sG~V~~IlVe~Gd~V~~Gqp-- 271 (277)
...|+||++|+|.++.++.|+.|..|++
T Consensus 104 ~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~ 183 (369)
T 4dk0_A 104 SKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTP 183 (369)
T ss_dssp HHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCC
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcc
Confidence 1359999999999999999999999998
Q ss_pred -EEEE
Q 023761 272 -LFVI 275 (277)
Q Consensus 272 -L~~I 275 (277)
|+.|
T Consensus 184 ~l~~i 188 (369)
T 4dk0_A 184 TIIKV 188 (369)
T ss_dssp CCBBC
T ss_pred eEEEE
Confidence 6654
No 41
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=98.01 E-value=7.4e-06 Score=68.92 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=45.4
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCcc------CCCC-eEEEEcC
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPV------SVDT-PLFVIEP 277 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V------~~Gq-pL~~Iep 277 (277)
++|+.|++||.+|.||++|...+|.||++|+|++++-+-.+.- -||+ -|++|++
T Consensus 63 ~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~PeliN~dPy~~GWl~ki~~ 123 (143)
T 3mxu_A 63 QNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTV 123 (143)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHSTTTTTCCEEEEC
T ss_pred CCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhhCCCCCCCeEEEEEE
Confidence 8999999999999999999999999999999999987655532 3553 6777653
No 42
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=97.98 E-value=2.5e-05 Score=72.87 Aligned_cols=68 Identities=21% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
....|+||..|.|+. +++.||.|++||+|+.|... ....+|+||.+|+|.... ..-.|..|+.|+.
T Consensus 256 ~~~~v~A~~~Gl~~~--------~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~~V~~G~~l~~ 325 (331)
T 3na6_A 256 GDCYLFSEHDGLFEI--------MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPGMIKSGDCAAV 325 (331)
T ss_dssp SCCCEECSSCEEEEE--------SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSSEECTTCEEEE
T ss_pred CcEEEeCCCCeEEEE--------cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEEEE
Confidence 355899999998775 79999999999999999984 567899999999998765 4577889999998
Q ss_pred Ec
Q 023761 275 IE 276 (277)
Q Consensus 275 Ie 276 (277)
|-
T Consensus 326 Ia 327 (331)
T 3na6_A 326 IG 327 (331)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 43
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.88 E-value=9.1e-06 Score=67.90 Aligned_cols=53 Identities=26% Similarity=0.433 Sum_probs=43.3
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecC---CCCcc---CCCC-eEEEEc
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAE---DRKPV---SVDT-PLFVIE 276 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe---~Gd~V---~~Gq-pL~~Ie 276 (277)
++|++|++||.+|.||++|...+|.||++|+|++++-+ +=+.| -||+ -|++|+
T Consensus 58 ~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~l~~~P~liN~dPy~~GWl~ki~ 117 (137)
T 3tzu_A 58 EVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQ 117 (137)
T ss_dssp CTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHHHHHCTHHHHHCTTTTTCCEEEE
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhhhhcChhhhcCCCCcCCcEEEEE
Confidence 89999999999999999999999999999999999643 22333 3553 666665
No 44
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=97.78 E-value=7.3e-05 Score=70.16 Aligned_cols=68 Identities=19% Similarity=0.153 Sum_probs=58.0
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc----ceeeEEecCCCeEEEEEecCCCCccCCCCeEEE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM----KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFV 274 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam----K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~ 274 (277)
....++|+..|.|.. .++.||.|++||+|+.|..+ +...+|+||.+|+|..+. ....|..|+.|+.
T Consensus 266 ~~~~v~A~~~G~~~~--------~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~V~~Gd~l~~ 335 (354)
T 3cdx_A 266 ADAYVMAPRTGLFEP--------THYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGRVTRGDAVAV 335 (354)
T ss_dssp GGGEEECSSCEEEEE--------SCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSEECTTCEEEE
T ss_pred CcEEEECCCCEEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCccCCCCEEEE
Confidence 345789999996654 78999999999999999984 778999999999998765 7788999999998
Q ss_pred Ec
Q 023761 275 IE 276 (277)
Q Consensus 275 Ie 276 (277)
|.
T Consensus 336 ia 337 (354)
T 3cdx_A 336 VM 337 (354)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 45
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=97.70 E-value=7.4e-05 Score=70.89 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred CCCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc------cceeeEEecCCCeEEEEEecCCCCccCCCCeE
Q 023761 199 SLPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA------MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPL 272 (277)
Q Consensus 199 ~~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa------mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL 272 (277)
+...|+||..|.|+. .++.||.|++||+|+.|-. .....+|+||.+|+|.... ..-.|..|+.|
T Consensus 289 ~~~~v~A~~~Gl~~~--------~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~--~~p~V~~G~~l 358 (368)
T 3fmc_A 289 NYRKFHAPKAGMVEY--------LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHF--ASASVHQGTEL 358 (368)
T ss_dssp GEEEEECSSCEEEEE--------CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEEC--SSSEECTTCEE
T ss_pred CcEEEecCCCEEEEE--------eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEe--CCCccCCCCEE
Confidence 345799999999987 8999999999999999988 4577899999999997665 55789999999
Q ss_pred EEE
Q 023761 273 FVI 275 (277)
Q Consensus 273 ~~I 275 (277)
+.|
T Consensus 359 ~~i 361 (368)
T 3fmc_A 359 YKV 361 (368)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 46
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=2.9e-05 Score=60.25 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=42.1
Q ss_pred CCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 232 GQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 232 GqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|..+|.++.++....|.||.+|+|.++++++||.|..||+|++|+
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le 49 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 49 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEE
Confidence 566799999999999999999999999999999999999999986
No 47
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=97.54 E-value=7.5e-05 Score=63.58 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=43.3
Q ss_pred cCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCC---cc---CCC-CeEEEEcC
Q 023761 224 KVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRK---PV---SVD-TPLFVIEP 277 (277)
Q Consensus 224 kvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd---~V---~~G-qpL~~Iep 277 (277)
++|+.|++|+.+|.||++|...+|.||++|+|++++-+--+ .| -|| .-|++|++
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~L~d~PeliN~dPyg~GWl~kik~ 128 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQV 128 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEEC
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhChHhhccCCCCCcEEEEEEE
Confidence 89999999999999999999999999999999999853322 12 244 36666653
No 48
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=97.49 E-value=0.00012 Score=62.53 Aligned_cols=64 Identities=17% Similarity=0.333 Sum_probs=55.2
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEEE-------------------
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------- 258 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~I------------------- 258 (277)
.|.||+.|++.. .-++.|.|-. |+-+++... ...++||++|+|..+
T Consensus 14 ~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLi 82 (162)
T 1ax3_A 14 VFVSPITGEIHP--------ITDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILI 82 (162)
T ss_dssp SCCCCCSEEEEE--------GGGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEE
T ss_pred EEEecCceEEEE--------eEECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 599999999998 4778887766 888887776 457899999999988
Q ss_pred ----------------ecCCCCccCCCCeEEEEc
Q 023761 259 ----------------IAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 259 ----------------lVe~Gd~V~~GqpL~~Ie 276 (277)
+|+.||.|..||+|+++.
T Consensus 83 HIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (162)
T 1ax3_A 83 HFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVD 116 (162)
T ss_dssp ECSSSTTTTTTTTEEESCCCCSEECSEEEEEEEC
T ss_pred EECccchhcCCCccEEEEeCCCEEcCCCEEEEEC
Confidence 899999999999999874
No 49
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=97.45 E-value=0.00016 Score=61.83 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=55.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEEE------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVEI------------------ 258 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~I------------------ 258 (277)
..|.||+.|++.. .-++.|.|-. |+-+++.... ..++||++|+|..+
T Consensus 13 ~~i~aP~~G~vv~--------l~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evL 81 (161)
T 1f3z_A 13 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELF 81 (161)
T ss_dssp EEEECSSCEEEEE--------GGGSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cEEEecCCeEEEE--------eEECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEE
Confidence 3599999999998 4477887766 8888887765 58899999999998
Q ss_pred -----------------ecCCCCccCCCCeEEEEc
Q 023761 259 -----------------IAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 259 -----------------lVe~Gd~V~~GqpL~~Ie 276 (277)
+|+.||.|..||+|+++.
T Consensus 82 iHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d 116 (161)
T 1f3z_A 82 VHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFD 116 (161)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEECccchhcCCCccEEEEeCcCEECCCCEEEEEC
Confidence 899999999999999874
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=97.42 E-value=0.00018 Score=60.91 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=55.2
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEec----CCeEEEEEccceeeEEecCCCeEEEE--------------------
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQK----GQVLCIIEAMKLMNEIEADRSGTIVE-------------------- 257 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~k----GqvL~~IEamK~~~eI~Ap~sG~V~~-------------------- 257 (277)
.|.||+.|++.. .-+++|.|-. |+-+++.... ..++||++|+|..
T Consensus 9 ~i~aP~~G~vv~--------l~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLi 77 (154)
T 2gpr_A 9 KVLAPCDGTIIT--------LDEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILL 77 (154)
T ss_dssp EEECSSSEEEEC--------GGGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEE
T ss_pred EEEecCCeEEEE--------eeECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEE
Confidence 589999999998 4578888766 8888887765 6899999999998
Q ss_pred ---------------EecCCCCccCCCCeEEEEc
Q 023761 258 ---------------IIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 258 ---------------IlVe~Gd~V~~GqpL~~Ie 276 (277)
++|+.||.|..||+|+++.
T Consensus 78 HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d 111 (154)
T 2gpr_A 78 HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVD 111 (154)
T ss_dssp ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEEC
T ss_pred EECcchhhcCCCceEEEEcCCCEEcCCCEEEEEC
Confidence 4899999999999999874
No 51
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=97.05 E-value=0.0017 Score=60.01 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc----cceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA----MKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa----mK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
..++|+..|.+.. +++.|+.|++||+|+.|-. ++...+|+||.+|+|.-+. ..-.|..|+.|+.|
T Consensus 258 ~~~~a~~~G~~~~--------~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~V~~Gd~l~~i 326 (332)
T 2qj8_A 258 DQLKSPSPGIFEP--------RCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMYVQGNEEVAIL 326 (332)
T ss_dssp GEEECSSSEEEEE--------CSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEEECTTCEEEEE
T ss_pred eEEeCCCCeEEEE--------eCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCeeCCCCEEEEE
Confidence 4678999998765 6899999999999999965 5677899999999997665 56678888888876
No 52
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=96.89 E-value=0.00085 Score=47.95 Aligned_cols=31 Identities=6% Similarity=0.245 Sum_probs=29.2
Q ss_pred EEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 246 EIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 246 eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|.|+.+|+|.+++++.||.|..|++|++|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 31 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILE 31 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEE
Confidence 3789999999999999999999999999986
No 53
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=96.80 E-value=0.0013 Score=47.00 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.|+.+|+|.+++++.||.|..||+|++|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~ 37 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLE 37 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEe
Confidence 46899999999999999999999999999986
No 54
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=96.64 E-value=0.0017 Score=47.03 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.|+.+|+|.++++++|+.|..||+|++|+
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~ 40 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLE 40 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEE
Confidence 456899999999999999999999999999986
No 55
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=96.51 E-value=0.0013 Score=49.23 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||.+|+|.+++++.|+.|..||+|+.|+
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie 37 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEME 37 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEE
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 46999999999999999999999999999986
No 56
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=96.48 E-value=0.0026 Score=55.87 Aligned_cols=52 Identities=31% Similarity=0.381 Sum_probs=41.9
Q ss_pred CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe-----------------------------cCCCCcc
Q 023761 216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPV 266 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il-----------------------------Ve~Gd~V 266 (277)
+-++..+|+.|+.|++||+||..+ +|.++++|+|.+.. +++|+.|
T Consensus 18 pyGA~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d~k~lP~I~I~d~~G~~~~~Y~LPvgA~l~~~V~dG~~V 91 (193)
T 2xha_A 18 SPKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKV 91 (193)
T ss_dssp CTTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTSSCEEEEEEEGGGCCCTTCCTTCEE
T ss_pred CCCCEEEECCCCEEcCCCEEEEeC------cEEEccCEEEEeeccCcEEEEEcCCCCEeEEEEcCCCCEEEEEcCCCCEE
Confidence 345667899999999999999877 89999999987543 6777777
Q ss_pred CCCCeEE
Q 023761 267 SVDTPLF 273 (277)
Q Consensus 267 ~~GqpL~ 273 (277)
..|++|+
T Consensus 92 ~~GdvLA 98 (193)
T 2xha_A 92 KQGLPLS 98 (193)
T ss_dssp CTTSBSS
T ss_pred cCCCEEe
Confidence 7777663
No 57
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=96.06 E-value=0.0038 Score=47.74 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.6
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.|+.+|+|.++++++||.|..||+|++|+
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 57 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIE 57 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEE
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEe
Confidence 456889999999999999999999999999986
No 58
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=96.04 E-value=0.0063 Score=44.22 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=30.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|+||..|++.+ .++++||.|..|+.|+.|++
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 45 VKIPSPVRGKIVK-------ILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp EECCCCCCEEEEE-------ECCCTTCEECSCSEEEEEEC
T ss_pred EEEECCCCEEEEE-------EEeCCcCEECCCCEEEEEEC
Confidence 4799999999999 89999999999999999873
No 59
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=96.01 E-value=0.0042 Score=47.85 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.++.+|+|.++++++|+.|..||+|++|+
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie 46 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMI 46 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEE
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEE
Confidence 456899999999999999999999999999986
No 60
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=95.97 E-value=0.0054 Score=44.91 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
..|+||+.|++.. .++++|+.|..|+.|+.|+
T Consensus 49 ~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 49 NQIEADKSGTVKA-------ILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp EEEECSSCEEEEE-------ECSCTTCEECTTCEEEEEC
T ss_pred EEEECCCCEEEEE-------EEcCCCCEECCCCEEEEEC
Confidence 4799999999999 8999999999999999885
No 61
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.89 E-value=0.0075 Score=54.79 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=40.3
Q ss_pred ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEECh
Confidence 3444433333445666665 45689999999999999999999999999999864
No 62
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.86 E-value=0.0053 Score=56.21 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.0
Q ss_pred ccCCCEEecCCeEEEEEcc-ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEam-K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
|+.|+....-..-+.|+.. .-...|.++++|+|.++++++||.|..||+|++|.+
T Consensus 35 v~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 35 ATRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDS 90 (359)
T ss_dssp CEEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEEC
T ss_pred eeecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEECh
Confidence 3444443444566788875 567889999999999999999999999999999863
No 63
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=95.84 E-value=0.0061 Score=44.51 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=31.5
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+||+.|++.+ .++++||.|..|++|+.|+.
T Consensus 43 ~~~i~Ap~~G~v~~-------~~v~~G~~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 43 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEV 76 (80)
T ss_dssp CEEEEBSSCEEEEE-------CCCCTTCEECTTCCCEEEES
T ss_pred eEEEeCCCCEEEEE-------EecCCCCEECCCCEEEEEEc
Confidence 45899999999999 89999999999999999985
No 64
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.83 E-value=0.0077 Score=57.08 Aligned_cols=51 Identities=31% Similarity=0.382 Sum_probs=41.8
Q ss_pred CCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEe-----------------------------cCCCCccC
Q 023761 217 PGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEII-----------------------------AEDRKPVS 267 (277)
Q Consensus 217 p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~Il-----------------------------Ve~Gd~V~ 267 (277)
-++..+|+.|+.|++||+||.-+ +|.++++|+|.+.. +++|+.|.
T Consensus 59 yga~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~~~p~i~i~d~~g~~~y~lp~ga~l~~~v~~g~~v~ 132 (352)
T 2xhc_A 59 PKAKLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNVRKIVVETIDRKYTKTYYIPESAGIEPGLRVGTKVK 132 (352)
T ss_dssp TTCEESCCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEEEEEEEECTTCSSEEEEEEEGGGCBCTTCCTTCEEC
T ss_pred CCCEEEecCCCEEcCCCEEEEec------cEEEecceEEEeeccCCceEEEEEcCCCCEEEEcCCCcEEEEecCCCCEEc
Confidence 34557899999999999999987 88899999886543 77888888
Q ss_pred CCCeEE
Q 023761 268 VDTPLF 273 (277)
Q Consensus 268 ~GqpL~ 273 (277)
.|++|+
T Consensus 133 ~G~vla 138 (352)
T 2xhc_A 133 QGLPLS 138 (352)
T ss_dssp TTCBSB
T ss_pred cCcEEe
Confidence 888774
No 65
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=95.47 E-value=0.012 Score=42.96 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.1
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
..|+||..|++.. .++++|+.|..|+.|+.|+..
T Consensus 42 ~~i~Ap~~G~v~~-------~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 42 MEVPSPKAGVVKS-------VSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp EEEECSSSSEEEE-------ESCCTTCEEETTSEEEEEECC
T ss_pred EEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEecC
Confidence 4799999999999 899999999999999998753
No 66
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=95.45 E-value=0.019 Score=50.03 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=50.4
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEe----cCCeEEEEEccceeeEEecCCCeEEE--------------------
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQ----KGQVLCIIEAMKLMNEIEADRSGTIV-------------------- 256 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~----kGqvL~~IEamK~~~eI~Ap~sG~V~-------------------- 256 (277)
..|.||+.|++.. +-++-|.|= -|+-++++=.. ..|.||++|+|.
T Consensus 35 ~~i~aPv~G~vi~--------L~eV~D~vFs~~~mGdG~AI~P~~---g~v~AP~dG~V~~vfpT~HAigi~s~~G~EvL 103 (183)
T 3our_B 35 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPTG---NKMVAPVNGTIGKIFETNHAFSIESDDGVELF 103 (183)
T ss_dssp EEEECSSCEEEEE--------GGGSSCHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eEEEeecceEEEE--------chhCcChHhcccCccCeEEEEcCC---CEEEeCCCeEEEEECCCCCEEEEEeCCCCEEE
Confidence 4699999999987 455566552 27777776543 378899999887
Q ss_pred ---------------EEecCCCCccCCCCeEEEEc
Q 023761 257 ---------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ---------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+.+|++||.|..||+|+++.
T Consensus 104 IHIGiDTV~L~G~gF~~~V~~Gd~Vk~Gd~L~~fD 138 (183)
T 3our_B 104 VHFGIDTVELKGEGFTRIAEEGQTVKAGDTVIEFD 138 (183)
T ss_dssp EECSBSGGGGTTTTEEECSCTTCEECTTCEEEEEC
T ss_pred EEecccccccCCccceEEEeCcCEEcCCCEEEEEC
Confidence 67888999999999999873
No 67
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=95.31 E-value=0.013 Score=42.72 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|+||..|++.. +++++||.|..|+.|+.|+.
T Consensus 45 ~~i~Ap~~G~v~~-------~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 45 MEVLAEADGVIAE-------IVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECSSCEEEEE-------ESSCTTCEECTTCEEEEECC
T ss_pred EEEEcCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 4799999999999 89999999999999999874
No 68
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=95.23 E-value=0.011 Score=54.96 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=36.2
Q ss_pred eEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 234 VLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 234 vL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
..+.|+.. -...|.++++|+|.++++++||.|..||+|++|.+
T Consensus 34 ~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd~V~kGq~L~~ld~ 76 (369)
T 1vf7_A 34 LPGRTNAF-RIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDP 76 (369)
T ss_dssp EEEECEES-CEEEECCSSCEEEEECCSCSSEEECTTSEEEEECC
T ss_pred EEEEEEee-eEEEEEeeCceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 44566654 35679999999999999999999999999999864
No 69
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=95.16 E-value=0.013 Score=49.54 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=46.7
Q ss_pred CCccCCccEEEEecCC----------CCC------------------CCcccCCCEEecCCeEEEEEccce---------
Q 023761 201 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEAMKL--------- 243 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~----------p~~------------------~~~VkvGd~V~kGqvL~~IEamK~--------- 243 (277)
..|+||..|++..--+ -+. ..+|++||+|++||.|+.++-..+
T Consensus 45 ~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~i~~~g~~~~t 124 (154)
T 2gpr_A 45 NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKS 124 (154)
T ss_dssp SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCE
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHHHHHhcCCCCeE
Confidence 4799999999986321 111 158999999999999999874321
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..-|.- .+ +..+....+..|..|+.|+.++
T Consensus 125 ~vvvtn-~~--~~~~~~~~~~~v~~g~~~~~~~ 154 (154)
T 2gpr_A 125 PIIFTN-NG--GKTLEIVKMGEVKQGDVVAILK 154 (154)
T ss_dssp EEEEEE-CS--SCCCSCBCCEEECTTCEEEEEC
T ss_pred EEEEEC-CC--cceEEEccCceEcCCCEEEEeC
Confidence 122222 11 1123333456688899998874
No 70
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=94.86 E-value=0.026 Score=43.05 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|+||..|++.+ ++++.|+.|..|+.|+.|+.
T Consensus 48 ~~i~Ap~~G~V~~-------i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 48 VTITSRYDGVIKK-------LYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp EECCCSSCEEEEE-------ECCCSSCEECTTSEEEEEEC
T ss_pred EEEEcCCCEEEEE-------EEcCCCCEeCCCCEEEEEec
Confidence 4799999999999 89999999999999999975
No 71
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=94.85 E-value=0.021 Score=41.72 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=27.4
Q ss_pred EecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+-++..|+|.+++++.||.|..||+|+.|+
T Consensus 10 ~g~~~~G~i~~~~v~~Gd~V~~G~~l~~ie 39 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGDTIAVDDTLITLE 39 (81)
T ss_dssp CSSCSSEEEEEECCCSSCBCCSSCCCEEEE
T ss_pred CCCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 446789999999999999999999999986
No 72
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=94.68 E-value=0.013 Score=53.64 Aligned_cols=54 Identities=22% Similarity=0.209 Sum_probs=42.7
Q ss_pred ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEcC
Q 023761 223 VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIEP 277 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Iep 277 (277)
|+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++||.|..||+|++|.+
T Consensus 12 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 12 VKRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQQVKKGDLLAEIDS 65 (369)
T ss_dssp CCEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTSCCCSSCCCEECCC
T ss_pred EEecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCCEECCCCEEEEEcC
Confidence 4455554455566777754 35578999999999999999999999999999863
No 73
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=94.59 E-value=0.011 Score=44.08 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=32.0
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEcc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEam 241 (277)
...|+||+.|++.+ +++++||.|..|+.|+.|+..
T Consensus 39 ~~~i~Ap~~G~V~~-------~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 39 SMEVPAPFAGVVKE-------LKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp EEEEECSSCBCCCE-------ECSCTTCCBCTTSEEEEEECC
T ss_pred EEEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEEcC
Confidence 45899999999999 899999999999999999864
No 74
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=94.57 E-value=0.031 Score=41.77 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEa 240 (277)
..|+||..|++.+ ++++.|+ .|..||+|+.|+.
T Consensus 49 ~~i~Ap~~G~v~~-------~~v~~G~~~V~~G~~l~~i~~ 82 (87)
T 3crk_C 49 IGFEVQEEGYLAK-------ILVPEGTRDVPLGTPLCIIVE 82 (87)
T ss_dssp EEEECCSCEEEEE-------ESSCTTCCCEETTCEEEEEES
T ss_pred ceeecCcCcEEEE-------EEECCCCeEECCCCEEEEEEc
Confidence 4799999999999 8999999 8999999999985
No 75
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=94.48 E-value=0.035 Score=52.58 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=42.1
Q ss_pred ccCCCEEecCCeEEEEEcc-ceeeEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 223 VKVGDRVQKGQVLCIIEAM-KLMNEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 223 VkvGd~V~kGqvL~~IEam-K~~~eI~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
|+.|+.-..=...+.|+.. .-...|.++++|+|.+++| ++||.|..||+|++|.
T Consensus 99 v~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld 154 (413)
T 3ne5_B 99 VTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 154 (413)
T ss_dssp CEEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTCEECTTCEEEEEE
T ss_pred EEEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCCEEcCCCEEEEEc
Confidence 3444444444556677653 4567899999999999998 9999999999999986
No 76
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=94.33 E-value=0.014 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEa 240 (277)
...|+||..|++.+ +++++||.|..|+.|+.|+.
T Consensus 45 ~~~i~Ap~~G~v~~-------~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 45 VLEVPASADGILDA-------VLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCCBCCSBCCCCB-------CTTCTTCEECSSSEEEBCCC
T ss_pred EEEEECCCCEEEEE-------EEcCCcCEECCCCEEEEEec
Confidence 35799999999999 89999999999999998864
No 77
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=94.25 E-value=0.018 Score=50.46 Aligned_cols=51 Identities=25% Similarity=0.240 Sum_probs=41.7
Q ss_pred CCCCCc--ccCCCEEecCCeEEEEEccceeeEEecCCCeEEEE--------------------------E--ecCCCCcc
Q 023761 217 PGEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVE--------------------------I--IAEDRKPV 266 (277)
Q Consensus 217 p~~~~~--VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~--------------------------I--lVe~Gd~V 266 (277)
.++-+. |+.|+.|+.||+|+ -...|-|+++|+|.- + +|.+||.|
T Consensus 77 vgA~l~~~V~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd~V 150 (193)
T 2xha_A 77 ESAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEV 150 (193)
T ss_dssp GGGCCCTTCCTTCEECTTSBSS------TTSCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEE
T ss_pred CCCEEEEEcCCCCEEcCCCEEe------cCCeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCCEE
Confidence 345577 99999999999998 345577888887762 3 89999999
Q ss_pred CCCCeEE
Q 023761 267 SVDTPLF 273 (277)
Q Consensus 267 ~~GqpL~ 273 (277)
..|++|.
T Consensus 151 ~~Ge~L~ 157 (193)
T 2xha_A 151 KQGEMLA 157 (193)
T ss_dssp CTTCEEE
T ss_pred CCCCCcc
Confidence 9999986
No 78
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=94.13 E-value=0.05 Score=46.69 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=41.4
Q ss_pred CccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceee-EEecCCCeEEEEEecCCC
Q 023761 206 PMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMN-EIEADRSGTIVEIIAEDR 263 (277)
Q Consensus 206 Pm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~-eI~Ap~sG~V~~IlVe~G 263 (277)
|.-|.-.. +++.+|+.|.+|+.|+.|.+.|-.. -|+||++|+|.-+.--.+
T Consensus 106 paeG~~V~-------~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~ 157 (169)
T 3d4r_A 106 PAEGYKVY-------PIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS 157 (169)
T ss_dssp EECSSEEE-------ECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred EeCceEEE-------EEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence 45555555 7899999999999999999999764 489999999987764433
No 79
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=93.99 E-value=0.06 Score=46.64 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=40.9
Q ss_pred CCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCc
Q 023761 216 APGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKP 265 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~ 265 (277)
+.+...+|+.||.|++||+||.. ++...+|-++++|+|.=..+.+|..
T Consensus 59 pyGa~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t 106 (190)
T 2auk_A 59 PYGAVLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT 106 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred CCCCEEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence 45666889999999999999976 5889999999999998777777654
No 80
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=93.96 E-value=0.043 Score=46.69 Aligned_cols=40 Identities=30% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCccCCccEEEEecCC----------CCC------------------CCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPA----------PGE------------------PPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~----------p~~------------------~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|+||+.|++..--+ -+. ..+|++||+|++||.|+.++-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 50 GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCccEEEEeCCCEEcCCCEEEEECH
Confidence 4789999999986321 111 138999999999999999874
No 81
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.84 E-value=0.048 Score=42.08 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=31.5
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEE-ecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRV-QKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V-~kGqvL~~IEam 241 (277)
..|+||..|++.+ +++++||.| ..||+|+.|+..
T Consensus 51 ~~i~Ap~~G~v~~-------i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 51 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp EEEECSSCEEEEE-------CSSCTTCCCEESSCEEEEEECT
T ss_pred eEEeCCCCEEEEE-------EEeCCCCEEcCCCCEEEEEecC
Confidence 5799999999999 999999998 999999999864
No 82
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=93.71 E-value=0.055 Score=42.55 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEcc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAM 241 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEam 241 (277)
..|+||..|++.+ +++++|+ .|..||+|+.|+..
T Consensus 51 ~~i~Ap~~G~V~~-------i~v~~G~~~V~~G~~l~~i~~~ 85 (108)
T 2dne_A 51 VGFESLEECYMAK-------ILVAEGTRDVPIGAIICITVGK 85 (108)
T ss_dssp EEEECSSSEEEEE-------CSSCTTCCSEETTCEEEEEESC
T ss_pred eEEeCCCCEEEEE-------EEeCCCCeeecCCCEEEEEecC
Confidence 4799999999999 9999999 89999999999864
No 83
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=93.24 E-value=0.089 Score=44.70 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=30.4
Q ss_pred CCccCCccEEEEecCC----------CC------------------CCCcccCCCEEecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPA----------PG------------------EPPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~----------p~------------------~~~~VkvGd~V~kGqvL~~IEa 240 (277)
..|+||+.|++..--+ -+ -..+|++||+|++||.|+.++-
T Consensus 50 ~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 50 NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECH
T ss_pred CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCccEEEEeCcCEECCCCEEEEECH
Confidence 4789999999976311 01 1138999999999999999874
No 84
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=92.85 E-value=0.075 Score=43.36 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=31.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCC-EEecCCeEEEEEccc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGD-RVQKGQVLCIIEAMK 242 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd-~V~kGqvL~~IEamK 242 (277)
..|.||..|++.+ ++|++|| .|..||+|+.|+...
T Consensus 71 ~~I~Ap~~G~V~~-------i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 71 IGFEVQEEGYLAK-------ILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEECCSCEEEEE-------ESSCTTCCSEETTCEEEEEESSG
T ss_pred eEEeCCCCeEEEE-------EEeCCCCeeecCCCEEEEEecCc
Confidence 4799999999999 9999998 899999999998643
No 85
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=92.68 E-value=0.074 Score=41.29 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=31.6
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecC-CeEEEEEccc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG-QVLCIIEAMK 242 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG-qvL~~IEamK 242 (277)
...|+||+.|++.. .++++|+.|..| +.|+.|....
T Consensus 67 ~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 67 HTEIKAPFDGTIGD-------ALVNIGDYVSASTTELVRVTNLN 103 (116)
T ss_dssp EEEEECSSSEEECC-------CSCCTTCEECTTTSCCEEEECSC
T ss_pred CCEEEcCCCEEEEE-------EECCCCCEEcCCCcEEEEEECCC
Confidence 34799999999998 899999999999 9999887643
No 86
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.30 E-value=0.1 Score=53.00 Aligned_cols=33 Identities=24% Similarity=0.232 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 644 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQEVQEGQALCTIE 644 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CCeEECCCcEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 456999999999999999999999999999986
No 87
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=92.09 E-value=0.14 Score=47.74 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=46.0
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|.++..|.+..- ...++.|+.|++||+|+.+-. .+|.+|.+|++.-. . .-.|..|+.++.|
T Consensus 265 ~v~a~~~g~~~~~-----~~~~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~--p-~p~V~~G~~~~~i 326 (350)
T 2bco_A 265 TIVRLHDDFDFMF-----DDNVENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVF--P-NRHVAIGQRAALM 326 (350)
T ss_dssp EEECCSSSEEESS-----CTTCCBTEECCTTCEEEEETT----EEEECSSSSCEEES--C-CTTCCTTSEEEEE
T ss_pred EEEcCCCCeEEec-----cccccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEe--c-CCCCCCCcEEEEE
Confidence 4667766765520 035799999999999999854 78899999987643 2 5778888877765
No 88
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=90.28 E-value=0.19 Score=54.92 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEE
Q 023761 218 GEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV 256 (277)
Q Consensus 218 ~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~ 256 (277)
+...+|+.||.|++||+||..+ ....+|-++++|+|.
T Consensus 1000 gs~l~v~~g~~V~~g~~ia~wD--p~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1000 GAVLAKGDGEQVAGGETVANWD--PHTMPVITEVSGFVR 1036 (1407)
T ss_dssp TCEESSCSSCEECTTCEEEECC--SSCCCEECSSCEEEE
T ss_pred CCEEEEcCCCEecCCCEEEEEe--cCceeEEeccceEEE
Confidence 4457899999999999999875 567788888888765
No 89
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=89.74 E-value=0.074 Score=50.34 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCCCc--ccCCCEEecCCeEEEEEccceeeEEecCCCeEEE------------------E----------EecCCCCccC
Q 023761 218 GEPPF--VKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIV------------------E----------IIAEDRKPVS 267 (277)
Q Consensus 218 ~~~~~--VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~------------------~----------IlVe~Gd~V~ 267 (277)
++-+. |+.|+.|+.||+|+ -...|-|+++|+|. + ++|.+||.|.
T Consensus 118 ga~l~~~v~~g~~v~~G~vla------k~~aiiaeidG~V~fg~~kr~i~i~~~~g~~~eylip~~~~k~~~v~~Gd~V~ 191 (352)
T 2xhc_A 118 SAGIEPGLRVGTKVKQGLPLS------KNEEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGKEVK 191 (352)
T ss_dssp GGCBCTTCCTTCEECTTCBSB------SSSSCBCCSCEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTCEEC
T ss_pred CcEEEEecCCCCEEccCcEEe------cCceEEeccceEEEECCcEEEEEEECCCCCEEEEEEcCCCCcCeeeCCCCEEe
Confidence 44466 99999999999887 23445555555554 2 2477889999
Q ss_pred CCCeEE
Q 023761 268 VDTPLF 273 (277)
Q Consensus 268 ~GqpL~ 273 (277)
.|++|.
T Consensus 192 ~G~~l~ 197 (352)
T 2xhc_A 192 QGEMLA 197 (352)
T ss_dssp TTCEEE
T ss_pred CCCCcc
Confidence 999986
No 90
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=89.56 E-value=0.22 Score=51.13 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd~V~~Gq~L~~iE 681 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGAKVAKGQPLCVLS 681 (718)
T ss_dssp SCEECSSCEEEEEECSCTTCCBCTTCCCEEEE
T ss_pred ceEeCCCCeEEEEEEeCCCCeeCCCCEEEEEe
Confidence 46999999999999999999999999999987
No 91
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=89.21 E-value=0.43 Score=41.41 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
++|++||+|++||.|+.++-.
T Consensus 120 ~~V~~Gd~Vk~Gd~L~~fD~~ 140 (183)
T 3our_B 120 RIAEEGQTVKAGDTVIEFDLA 140 (183)
T ss_dssp ECSCTTCEECTTCEEEEECHH
T ss_pred EEEeCcCEEcCCCEEEEECHH
Confidence 889999999999999998643
No 92
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=88.89 E-value=0.29 Score=52.70 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 244 MNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 244 ~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
...|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1077 ~~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~ie 1109 (1150)
T 3hbl_A 1077 PSHIGAQMPGSVTEVKVSVGETVKANQPLLITE 1109 (1150)
T ss_dssp SSEEECSSSEEEEEECCCTTCEECTTCEEEEEE
T ss_pred CceeecCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 93
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=88.35 E-value=0.34 Score=52.61 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=30.1
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 1168 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 1199 (1236)
T 3va7_A 1168 ELLYSEYTGRFWKPVAAVGDHVEAGDGVIIIE 1199 (1236)
T ss_dssp EEEECSSCEEEEEESSCTTCEECSSCEEEEEE
T ss_pred cEEeCCCcEEEEEEEcCCCCEECCCCEEEEEE
Confidence 35899999999999999999999999999986
No 94
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=87.80 E-value=0.1 Score=52.93 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||..|+|.+++|++||.|+.||+|+.||
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd~V~~g~~l~~iE 634 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQTVEAGATLVVLE 634 (675)
T ss_dssp --------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCCEEcCCCEEEEEE
Confidence 45889999999999999999999999999986
No 95
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=86.39 E-value=0.49 Score=50.97 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=25.7
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..|.||..|+|.+++|++||.|..||+|+.|+
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd~V~~G~~l~~iE 1127 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQAVNAGDVLVSIE 1127 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCCCC---CEEEEEE
T ss_pred ceeeCCCCeEEEEEEcCCcCEeCCCCEEEEEE
Confidence 46889999999999999999999999999886
No 96
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=84.65 E-value=0.76 Score=40.22 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.6
Q ss_pred CCCccCCccEEEEecCCCCCCCcccCCCEEecC--CeEEEEEc
Q 023761 200 LPPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKG--QVLCIIEA 240 (277)
Q Consensus 200 ~~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kG--qvL~~IEa 240 (277)
...|+||+.|++.. +++++|+.|..| +.|+.|..
T Consensus 130 ~~~I~AP~~G~V~~-------~~~~~G~~v~~g~~~~l~~i~~ 165 (277)
T 2f1m_A 130 YTKVTSPISGRIGK-------SNVTEGALVQNGQATALATVQQ 165 (277)
T ss_dssp TTEECCSSCEEECC-------CSSCBTCEECTTCSSCSEEEEE
T ss_pred cCEEECCCCeEEEe-------EEcCCCCEEcCCCCceeEEEec
Confidence 35899999999999 899999999999 57887754
No 97
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=82.87 E-value=0.24 Score=47.71 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK 242 (277)
..|.||..|++.+ ++|++||.|..||+|+.|+...
T Consensus 46 ~~i~ap~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (428)
T 3dva_I 46 VEIPSPVKGKVLE-------ILVPEGTVATVGQTLITLDAPG 80 (428)
T ss_dssp ------------------------------------------
T ss_pred EEEecCCCeEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 4799999999999 9999999999999999998643
No 98
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=81.85 E-value=0.28 Score=43.59 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCE-EecCCeEEEEEc
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDR-VQKGQVLCIIEA 240 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~-V~kGqvL~~IEa 240 (277)
..|.+|..|++.+ ++|++||. |..|++|++|+.
T Consensus 47 ~ei~Ap~~G~v~~-------i~v~~G~~~V~~G~~l~~i~~ 80 (229)
T 1zy8_K 47 VTLDASDDGILAK-------IVVEEGSKNIRLGSLIGLIVE 80 (229)
T ss_dssp -----------------------------------------
T ss_pred eEEecCCCeEEEE-------EEecCCCeeecCCCEEEEEec
Confidence 4799999999999 99999997 999999999974
No 99
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=77.25 E-value=1.1 Score=49.18 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.4
Q ss_pred CCCCCCcccCCCEEecCCeEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCII 238 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~I 238 (277)
+.++-..|+.|+.|+.||+|+.|
T Consensus 1102 p~~a~~~v~~g~~v~~g~vlaki 1124 (1407)
T 3lu0_D 1102 PGKAIVQLEDGVQISSGDTLARI 1124 (1407)
T ss_dssp CTTCCCCCCSSCEECTTCEEECC
T ss_pred CCCcEEEecCCCEeccCceEEec
Confidence 34555789999999999999976
No 100
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=71.89 E-value=3.4 Score=38.78 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=28.7
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-..-|+||.+|.+. ..++.||.|+.||+|++|.
T Consensus 289 ~~~~v~A~~~Gl~~-~~v~lGd~V~kG~~la~I~ 321 (368)
T 3fmc_A 289 NYRKFHAPKAGMVE-YLGKVGVPMKATDPLVNLL 321 (368)
T ss_dssp GEEEEECSSCEEEE-ECSCTTCCBCTTCEEEEEE
T ss_pred CcEEEecCCCEEEE-EeCCCCCEeCCCCEEEEEE
Confidence 34468999999776 8999999999999999985
No 101
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=67.36 E-value=5.7 Score=38.89 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=32.0
Q ss_pred EEccceeeEEecCCCeEE-----------------------------EEEecCCCCccCCCCeEEEEc
Q 023761 238 IEAMKLMNEIEADRSGTI-----------------------------VEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 238 IEamK~~~eI~Ap~sG~V-----------------------------~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+..-+...+|.|+.+|+| ..++++.||.|+.|++|++|.
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~~V~~g~~l~~i~ 433 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQRLRRGTPWLRVH 433 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTCEECTTCEEEEEE
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCCEECCCCeEEEEE
Confidence 344567788888888888 457789999999999999984
No 102
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=66.39 E-value=3.4 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.8
Q ss_pred CCcccCCCEEecCCeEEEEEc
Q 023761 220 PPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEa 240 (277)
.+.|++||+|++||+|+.+-.
T Consensus 84 ~i~V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 84 QIQVSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp SCCCCTTCEECTTCEEEEECS
T ss_pred ccccCCCCEEcCCCEEEeecC
Confidence 377999999999999999875
No 103
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=65.52 E-value=5 Score=36.93 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=28.0
Q ss_pred eeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 243 LMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 243 ~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
-..-|+||.+|.+. -.++.||.|+.||+|++|.
T Consensus 256 ~~~~v~A~~~Gl~~-~~v~~Gd~V~~G~~la~I~ 288 (331)
T 3na6_A 256 GDCYLFSEHDGLFE-IMIDLGEPVQEGDLVARVW 288 (331)
T ss_dssp SCCCEECSSCEEEE-ESSCTTCEECTTCEEEEEE
T ss_pred CcEEEeCCCCeEEE-EcCCCCCEEcCCCEEEEEE
Confidence 34568999999665 5899999999999999985
No 104
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=63.70 E-value=6.9 Score=36.18 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=28.4
Q ss_pred ceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 242 KLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 242 K~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
+-..-++|+.+| +.+..++.|+.|+.||+|+.|.
T Consensus 265 ~~~~~v~A~~~G-~~~~~~~~g~~V~~G~~La~i~ 298 (354)
T 3cdx_A 265 EADAYVMAPRTG-LFEPTHYVGEEVRTGETAGWIH 298 (354)
T ss_dssp CGGGEEECSSCE-EEEESCCTTCEECTTSEEEEEE
T ss_pred CCcEEEECCCCE-EEEEeCCCCCEeCCCCEEEEEE
Confidence 445568999999 5567789999999999999975
No 105
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=62.71 E-value=7.8 Score=37.46 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=17.7
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.++.+.||.|+.|++|++|.
T Consensus 379 ~~~~k~g~~v~~g~~l~~i~ 398 (433)
T 1brw_A 379 VLHKKIGDRVQKGEALATIH 398 (433)
T ss_dssp EESCCTTCEECTTCEEEEEE
T ss_pred eEeccCCCEECCCCeEEEEE
Confidence 57788999999999999984
No 106
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=60.82 E-value=8.8 Score=37.18 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=17.2
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.++++.||.|+.|++|++|.
T Consensus 382 ~l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 382 VLNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred EEecCCcCEeCCCCeEEEEe
Confidence 46778999999999999984
No 107
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=58.65 E-value=9 Score=36.96 Aligned_cols=20 Identities=10% Similarity=0.126 Sum_probs=17.7
Q ss_pred EEecCCCCccCCCCeEEEEc
Q 023761 257 EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 257 ~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.++.+.||.|+.|++|++|.
T Consensus 371 ~~~~k~g~~v~~g~~l~~i~ 390 (423)
T 2dsj_A 371 YLLKKPGDRVERGEALALVY 390 (423)
T ss_dssp EESCCTTCEECTTSEEEEEE
T ss_pred eeeccCCCEeCCCCeEEEEE
Confidence 57788999999999999985
No 108
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=58.11 E-value=4.6 Score=36.15 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
+.|++||.|++||+|+.+-..
T Consensus 135 i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 135 VSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp ESCCTTCEECTTCEEEECBCC
T ss_pred cccCCCCEECCCCEEEEeCCc
Confidence 679999999999999998754
No 109
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=56.02 E-value=1.7 Score=40.23 Aligned_cols=36 Identities=11% Similarity=-0.087 Sum_probs=25.7
Q ss_pred CcccCCCEEecCCeEEEEEcc-----ceeeEEecCCCeEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM-----KLMNEIEADRSGTIV 256 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam-----K~~~eI~Ap~sG~V~ 256 (277)
..++.|+.|++||+|+.|-.. ....+|.+|.+|+|.
T Consensus 277 ~~~~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~ 317 (341)
T 1yw4_A 277 DSVENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKP 317 (341)
T ss_dssp TTCCBTEECCSSCCCC--------CCSSCCEEESCCTTCCS
T ss_pred ecCCCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCcee
Confidence 457999999999999987654 244569999999774
No 110
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=55.10 E-value=5.6 Score=36.74 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.5
Q ss_pred CCcccCCCEEecCCeEEEEEc
Q 023761 220 PPFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEa 240 (277)
.+.|++||+|++||+|+.+-.
T Consensus 250 ~~~V~~G~~V~~Gq~Ig~~G~ 270 (334)
T 3csq_A 250 PLPFDVGKKLKKGDLMGHTGI 270 (334)
T ss_dssp SCCCCTTCEECTTSEEEECBC
T ss_pred cccCCCcCEECCCCEEEeecC
Confidence 467999999999999998754
No 111
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=53.94 E-value=15 Score=31.23 Aligned_cols=54 Identities=19% Similarity=-0.010 Sum_probs=37.6
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
..|.|+..|++... . |. ..+|+-..-...+.+-. .++.|+.||.|..||.|..+
T Consensus 49 tpV~A~~~G~V~~~---------~-------G~-~V~I~H~~g~~t~Y~HL----~~i~V~~G~~V~~Gq~IG~v 102 (182)
T 3it5_A 49 YSVVAAHAGTVRVL---------S-------RC-QVRVTHPSGWATNYYHM----DQIQVSNGQQVSADTKLGVY 102 (182)
T ss_dssp CEEECSSSEEEEEE---------E-------TT-EEEEECTTSEEEEEESE----ESCCCCTTCEECTTCEEEEE
T ss_pred CEEEeccCEEEEEE---------C-------Ce-EEEEEECCcEEEEEEcC----CccccCCCCEEcCCCEEEee
Confidence 46888899998871 1 33 34555555444444443 35789999999999999886
No 112
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=53.71 E-value=6.9 Score=37.88 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=29.7
Q ss_pred EccceeeEEecCCCeEEE-------------------------------EEecCCCCccCCCCeEEEEc
Q 023761 239 EAMKLMNEIEADRSGTIV-------------------------------EIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 239 EamK~~~eI~Ap~sG~V~-------------------------------~IlVe~Gd~V~~GqpL~~Ie 276 (277)
..-+...+|.|+.+|+|. .++.+.||.|+.|++|++|.
T Consensus 335 ~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~~v~~g~~l~~i~ 403 (440)
T 2tpt_A 335 PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIH 403 (440)
T ss_dssp CCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTCEEBTTBCSEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCCEECCCCeEEEEe
Confidence 345666777888888774 46778899999999999984
No 113
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=52.89 E-value=6.2 Score=35.91 Aligned_cols=20 Identities=40% Similarity=0.498 Sum_probs=17.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
+.|++||.|++||+|+.+-.
T Consensus 232 i~V~~G~~V~~Gq~IG~vG~ 251 (282)
T 2hsi_A 232 IDVKLGQQVPRGGVLGKVGA 251 (282)
T ss_dssp ECSCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 67999999999999998754
No 114
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=51.36 E-value=6.8 Score=36.12 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.3
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
+.|++||.|++||+|+.+-.
T Consensus 239 i~Vk~Gq~V~~GqvIG~vG~ 258 (291)
T 1qwy_A 239 LTVSAGDKVKAGDQIAYSGS 258 (291)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 57899999999999998754
No 115
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=49.76 E-value=7.3 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=17.5
Q ss_pred cccCCCEEecCCeEEEEEc
Q 023761 222 FVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEa 240 (277)
.|++||.|++||+|+.+-.
T Consensus 183 ~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 183 ELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp SCCTTCEECTTCEEEECBC
T ss_pred cCCCCCEECCCCEEEEECC
Confidence 7999999999999999864
No 116
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=48.39 E-value=9.4 Score=32.70 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.6
Q ss_pred CCCCCCcccCCCEEecCCeEEEEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~~IE 239 (277)
+.++-+.|+.|++|++||+|+.|-
T Consensus 163 P~ga~i~v~dG~~V~~GdvLArip 186 (190)
T 2auk_A 163 PGKAIVQLEDGVQISSGDTLARIP 186 (190)
T ss_dssp CTTCEESSCTTCEECTTCEEEEEE
T ss_pred CCCCEEEEcCCCEEcCCCEEEEcc
Confidence 456667899999999999999875
No 117
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=47.73 E-value=20 Score=31.91 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=36.2
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
.|.|+..|++.. ..-..| -|- +.+|+-..-...+.+- +.++.|+.|+.|..||.|..+
T Consensus 95 pV~A~~~G~V~~-------~g~~~~----~G~-~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd~V~~Gq~IG~v 152 (245)
T 3tuf_B 95 DVSASLSGTVVK-------AEKDPV----LGY-VVEVEHADGLSTVYQS----LSEVSVEQGDKVKQNQVIGKS 152 (245)
T ss_dssp EEECSSCEEEEE-------EEEETT----TEE-EEEEECSTTEEEEEEE----ESEESCCTTCEECTTCEEEEC
T ss_pred eEEeCcCeEEEE-------EEecCC----Cce-EEEEEeCCCEEEEEec----CCccccCCCCEECCCCEEEEe
Confidence 477777777766 111111 122 3455555444444443 346889999999999999876
No 118
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=47.00 E-value=11 Score=30.83 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=26.0
Q ss_pred EEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 246 EIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 246 eI~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
.+.++.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 38 ~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VE 69 (136)
T 1zko_A 38 NHAQEQLGDVVYVDLPEVGREVKKGEVVASIE 69 (136)
T ss_dssp HHHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred hhhcccCCCcEEEEecCCCCEEeCCCEEEEEE
Confidence 455666788888877 9999999999999986
No 119
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=46.81 E-value=30 Score=34.93 Aligned_cols=42 Identities=21% Similarity=0.389 Sum_probs=31.4
Q ss_pred cccCCCEEecCCeEEEEEccc-eeeEEec--CCCeEEEEEecCCCCc
Q 023761 222 FVKVGDRVQKGQVLCIIEAMK-LMNEIEA--DRSGTIVEIIAEDRKP 265 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK-~~~eI~A--p~sG~V~~IlVe~Gd~ 265 (277)
.+++||.|..||+++.+.-.. ..+.|.. .+.|+|+.| ..|+.
T Consensus 130 ~~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g~~ 174 (600)
T 3vr4_A 130 TIEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESGSF 174 (600)
T ss_dssp CSCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCEEE
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCCcc
Confidence 489999999999999986544 3355533 368999987 66664
No 120
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=46.41 E-value=8.9 Score=35.62 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
..|++||.|++||+|+.+-.
T Consensus 284 ~~v~~G~~V~~G~~Ig~~G~ 303 (361)
T 2gu1_A 284 ILVKKGQLVKRGQKIALAGA 303 (361)
T ss_dssp ECCCTTCEECTTCEEEECCC
T ss_pred cccCCcCEECCCCEEEEECC
Confidence 67999999999999998864
No 121
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=43.95 E-value=12 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.5
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 td~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vE 60 (131)
T 1hpc_A 28 TDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVE 60 (131)
T ss_dssp CHHHHHHHCSEEEEECCCTTCEECBTSEEEEEE
T ss_pred ehhhcccCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 3345566788888888 9999999999999986
No 122
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=42.92 E-value=20 Score=32.54 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=26.9
Q ss_pred eEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.-++|+.+|.+. -.++.|+.|+.|++|++|.
T Consensus 258 ~~~~a~~~G~~~-~~~~~g~~V~~G~~la~i~ 288 (332)
T 2qj8_A 258 DQLKSPSPGIFE-PRCSVMDEVEQGDVVGVLH 288 (332)
T ss_dssp GEEECSSSEEEE-ECSCTTCEECTTCEEEEEE
T ss_pred eEEeCCCCeEEE-EeCCCCCEeCCCCEEEEEE
Confidence 457899999776 7899999999999999874
No 123
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=41.80 E-value=18 Score=34.90 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.3
Q ss_pred CcccCCCEEecCCeEEEEEccc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMK 242 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK 242 (277)
.+++.||+|++||+|+.|=+..
T Consensus 380 ~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 380 LHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp ESCCTTCEECTTCEEEEEEESS
T ss_pred EeccCCCEECCCCeEEEEEcCC
Confidence 7799999999999999996543
No 124
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.62 E-value=18 Score=34.79 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
.+++.||+|++||+|+.|=+.
T Consensus 372 ~~~k~g~~v~~g~~l~~i~~~ 392 (423)
T 2dsj_A 372 LLKKPGDRVERGEALALVYHR 392 (423)
T ss_dssp ESCCTTCEECTTSEEEEEEEC
T ss_pred eeccCCCEeCCCCeEEEEEeC
Confidence 779999999999999999654
No 125
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=40.29 E-value=20 Score=34.71 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=17.6
Q ss_pred CcccCCCEEecCCeEEEEE
Q 023761 221 PFVKVGDRVQKGQVLCIIE 239 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IE 239 (277)
++++.||+|++||+|+.|=
T Consensus 383 l~~~~G~~V~~g~~l~~i~ 401 (436)
T 3h5q_A 383 LNKKIGDKVEEGESLLTIH 401 (436)
T ss_dssp ESCCTTCEECTTSEEEEEE
T ss_pred EecCCcCEeCCCCeEEEEe
Confidence 7799999999999999885
No 126
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=39.28 E-value=21 Score=34.88 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.3
Q ss_pred CCcccCCCEEecCCeEEEEEcc
Q 023761 220 PPFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 220 ~~~VkvGd~V~kGqvL~~IEam 241 (277)
..++++||+|++||+|+.|=+.
T Consensus 414 ~l~~k~G~~V~~g~~l~~i~~~ 435 (474)
T 1uou_A 414 ELLVDVGQRLRRGTPWLRVHRD 435 (474)
T ss_dssp EECSCTTCEECTTCEEEEEEES
T ss_pred EEEccCCCEECCCCeEEEEEcC
Confidence 3789999999999999999654
No 127
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=39.15 E-value=17 Score=29.21 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=25.6
Q ss_pred eEEecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 245 NEIEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 245 ~eI~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
.++..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 28 t~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 60 (128)
T 1onl_A 28 TDYAQDALGDVVYVELPEVGRVVEKGEAVAVVE 60 (128)
T ss_dssp CHHHHHHHCSEEEEECBCTTCEECTTCEEEEEE
T ss_pred ehHHhhcCCCceEEEecCCCCEEeCCCEEEEEE
Confidence 3344566677888877 9999999999999986
No 128
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=39.06 E-value=9.7 Score=28.84 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.3
Q ss_pred CCCCCCcccCCCEEecCCeEE
Q 023761 216 APGEPPFVKVGDRVQKGQVLC 236 (277)
Q Consensus 216 ~p~~~~~VkvGd~V~kGqvL~ 236 (277)
+.+..+.|++||.|++||.|.
T Consensus 62 p~~~~l~V~eGd~V~~G~~Lt 82 (84)
T 2lmc_B 62 PKWRQLNVFEGERVERGDVIS 82 (84)
T ss_dssp CTTSCCSSCTTEEECBSCSSB
T ss_pred CCCCceEeCCCCEECCCCCcc
Confidence 445667899999999999763
No 129
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=38.77 E-value=22 Score=30.37 Aligned_cols=41 Identities=22% Similarity=0.065 Sum_probs=31.2
Q ss_pred CCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEEc
Q 023761 225 VGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 225 vGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
.|-.+++|+-||.+++. |..+-+.+..|+.|..|+.|+.|.
T Consensus 92 ~~~~lkkGt~L~lvpae-----------G~~V~~i~~~G~rV~kgd~lA~i~ 132 (169)
T 3d4r_A 92 TLTYLKAGTKLISVPAE-----------GYKVYPIMDFGFRVLKGYRLATLE 132 (169)
T ss_dssp EEEEECTTCBCEEEEEC-----------SSEEEECCCCSEEECTTCEEEEEE
T ss_pred EEEEEcCCCEEEEEEeC-----------ceEEEEEcCcCcEeccCCeEEEEE
Confidence 45557788888887754 555567788999999999999874
No 130
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=38.42 E-value=18 Score=29.10 Aligned_cols=30 Identities=23% Similarity=0.109 Sum_probs=24.8
Q ss_pred EecCCCeEEEEEec-CCCCccCCCCeEEEEc
Q 023761 247 IEADRSGTIVEIIA-EDRKPVSVDTPLFVIE 276 (277)
Q Consensus 247 I~Ap~sG~V~~IlV-e~Gd~V~~GqpL~~Ie 276 (277)
+..+.-|.|..+.+ +.|+.|..|++|+.|+
T Consensus 31 ~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vE 61 (128)
T 3a7l_A 31 HAQELLGDMVFVDLPEVGATVSAGDDCAVAE 61 (128)
T ss_dssp HHHHHHCSEEEEECCCTTCEECTTCEEEEEE
T ss_pred HHhccCCceEEEEecCCCCEEeCCCEEEEEE
Confidence 44556677888877 9999999999999986
No 131
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=37.89 E-value=16 Score=33.35 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (285)
T 1o4u_A 75 FNVEDGEYLEGTGVIGEIEG 94 (285)
T ss_dssp ESCCTTCEEESCEEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEE
Confidence 78999999999999999985
No 132
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=37.55 E-value=17 Score=33.10 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 76 ~~~~dG~~v~~g~~v~~i~G 95 (286)
T 1x1o_A 76 PLVAEGARVAEGTEVARVRG 95 (286)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCccCCCEEEEEEE
Confidence 68999999999999999985
No 133
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=35.88 E-value=17 Score=33.01 Aligned_cols=20 Identities=40% Similarity=0.519 Sum_probs=18.7
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~v~~i~G 94 (284)
T 1qpo_A 75 DRVEDGARVPPGEALMTLEA 94 (284)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCcEEEEEEE
Confidence 78999999999999999985
No 134
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=34.87 E-value=20 Score=32.88 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=18.8
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 79 ~~~~dG~~v~~g~~v~~i~G 98 (287)
T 3tqv_A 79 WLYSDAQKVPANARIFELKG 98 (287)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 78999999999999999985
No 135
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=33.79 E-value=15 Score=35.57 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEcc
Q 023761 221 PFVKVGDRVQKGQVLCIIEAM 241 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEam 241 (277)
.++++||+|++||+|+.|=+.
T Consensus 385 ~~~k~g~~v~~g~~l~~i~~~ 405 (440)
T 2tpt_A 385 DMARLGDQVDGQRPLAVIHAK 405 (440)
T ss_dssp SCCCTTCEEBTTBCSEEEEES
T ss_pred EeccCCCEECCCCeEEEEecC
Confidence 789999999999999999654
No 136
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=33.78 E-value=21 Score=33.00 Aligned_cols=20 Identities=35% Similarity=0.190 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|+++.|+.|++||+|+.|+.
T Consensus 88 ~~~~dG~~v~~g~~v~~i~G 107 (300)
T 3l0g_A 88 IHKKDGDITGKNSTLVSGEA 107 (300)
T ss_dssp ECCCTTCEECSSCEEEEEEE
T ss_pred EEeCCCCEeeCCCEEEEEEE
Confidence 89999999999999999985
No 137
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=33.66 E-value=37 Score=30.76 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 201 PPLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 201 ~~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
..|.|+..|++... |+.-.-|. ..+|+-..-...+.+- +.++.|+.||.|..||.|..+
T Consensus 191 tpV~A~~~G~V~~~-----------g~~~~~G~-~ViI~Hg~G~~t~Y~H----L~~i~V~~G~~V~~Gq~IG~v 249 (282)
T 2hsi_A 191 TPIKAPAAGKVILI-----------GDYFFNGK-TVFVDHGQGFISMFCH----LSKIDVKLGQQVPRGGVLGKV 249 (282)
T ss_dssp CEEECSSCEEEEEE-----------EEETTTEE-EEEEEEETTEEEEEEE----ESEECSCTTCEECTTCEEEEC
T ss_pred CeEEeccCeEEEEE-----------EEcCCCCC-EEEEEeCCcEEEEEEC----CCccccCCcCEECCCCEEEEE
Confidence 36888888888762 11101133 2345544434444433 335789999999999999875
No 138
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=33.59 E-value=39 Score=30.07 Aligned_cols=58 Identities=17% Similarity=-0.065 Sum_probs=36.8
Q ss_pred CccCCccEEEEecCCCCCCCcccCCCEEecCCeEEEEEccceeeEEecCCCeEEEEE-ecCCCCccCCCCeEEEE
Q 023761 202 PLKCPMAGTFYRSPAPGEPPFVKVGDRVQKGQVLCIIEAMKLMNEIEADRSGTIVEI-IAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 202 ~I~APm~G~~~~sp~p~~~~~VkvGd~V~kGqvL~~IEamK~~~eI~Ap~sG~V~~I-lVe~Gd~V~~GqpL~~I 275 (277)
.|.|+..|++... .-..| -| -..+|+...-...+.+-. .++ .|+.||.|..||.|..+
T Consensus 141 pV~A~~~G~V~~~-------g~~~~----~G-~~V~I~H~~G~~t~Y~HL----~~~~~V~~G~~V~~Gq~IG~v 199 (252)
T 3nyy_A 141 PVVSMTDGVVTEK-------GWLEK----GG-WRIGITAPTGAYFYYAHL----DSYAELEKGDPVKAGDLLGYM 199 (252)
T ss_dssp EEECSSCEEEEEE-------EEETT----TE-EEEEEECTTSCEEEEEEE----SEECSCCTTCEECTTCEEEEC
T ss_pred eEEeccCEEEEEE-------EecCC----CC-CEEEEEeCCcEEEEEeeC----CCCCcCCCCCEECCCCEEEEE
Confidence 6899999998771 11111 12 234555544344444443 335 89999999999999876
No 139
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=29.86 E-value=27 Score=32.17 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|++++|+.|.+||+|+.|+.
T Consensus 90 ~~~~dG~~v~~g~~l~~v~G 109 (298)
T 3gnn_A 90 WRHREGDRMSADSTVCELRG 109 (298)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEe
Confidence 78999999999999999985
No 140
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=29.24 E-value=28 Score=32.41 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|++++|+.|.+||+|+.|+.
T Consensus 112 ~~~~dG~~v~~g~~l~~v~G 131 (320)
T 3paj_A 112 WHVQDGDTLTPNQTLCTLTG 131 (320)
T ss_dssp ESSCTTCEECTTCEEEEEEE
T ss_pred EEeCCCCEecCCCEEEEEEe
Confidence 79999999999999999985
No 141
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=28.15 E-value=28 Score=31.16 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=18.4
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|++++|+.|.+|++|+.|+.
T Consensus 62 ~~~~eG~~v~~g~~~~~v~G 81 (273)
T 2b7n_A 62 QTIKDKERFKPKDALMEIRG 81 (273)
T ss_dssp EECCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCCcCCCCEEEEEEe
Confidence 57999999999999999985
No 142
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=27.97 E-value=30 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.9
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|++++|+.|.+|++|+.|+.
T Consensus 89 ~~~~dG~~v~~g~~~~~v~G 108 (296)
T 1qap_A 89 WHVDDGDAIHANQTVFELQG 108 (296)
T ss_dssp ESCCTTCEECTTCEEEEEEE
T ss_pred EEcCCCCEecCCCEEEEEEE
Confidence 78999999999999999985
No 143
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=25.28 E-value=71 Score=29.30 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=17.7
Q ss_pred EEEecCCCCccCCCCeEEEE
Q 023761 256 VEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 256 ~~IlVe~Gd~V~~GqpL~~I 275 (277)
.++.|+.||.|..||.|..+
T Consensus 237 s~i~Vk~Gq~V~~GqvIG~v 256 (291)
T 1qwy_A 237 NRLTVSAGDKVKAGDQIAYS 256 (291)
T ss_dssp SEECCCTTCEECTTCEEEEC
T ss_pred CccccCCcCEECCCCEEEEE
Confidence 35789999999999999876
No 144
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=24.84 E-value=33 Score=31.22 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=18.5
Q ss_pred CcccCCCEEecCCeEEEEEc
Q 023761 221 PFVKVGDRVQKGQVLCIIEA 240 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEa 240 (277)
|++++|+.|.+|++|+.|+.
T Consensus 75 ~~~~dG~~v~~g~~l~~v~G 94 (299)
T 2jbm_A 75 WFLPEGSKLVPVARVAEVRG 94 (299)
T ss_dssp ESSCTTCEECSSEEEEEEEE
T ss_pred EEcCCCCCCCCCCEEEEEEE
Confidence 57999999999999999985
No 145
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=24.14 E-value=83 Score=28.96 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=23.5
Q ss_pred EEEccceeeEEecCCCeEEEEEecCCCCccCCCCeEEEE
Q 023761 237 IIEAMKLMNEIEADRSGTIVEIIAEDRKPVSVDTPLFVI 275 (277)
Q Consensus 237 ~IEamK~~~eI~Ap~sG~V~~IlVe~Gd~V~~GqpL~~I 275 (277)
+|+-..-...+.+- +.++.|+.||.|..||.|..+
T Consensus 267 ~i~h~~g~~t~Y~h----l~~~~v~~G~~V~~G~~Ig~~ 301 (361)
T 2gu1_A 267 VIEHNSVYKTRYLH----LDKILVKKGQLVKRGQKIALA 301 (361)
T ss_dssp EEECSSSEEEEEEE----ESEECCCTTCEECTTCEEEEC
T ss_pred EEEECCCEEEEEeC----cCccccCCcCEECCCCEEEEE
Confidence 44444333334433 334789999999999999876
No 146
>1yw6_A Succinylglutamate desuccinylase; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.10A {Escherichia coli} SCOP: c.56.5.7
Probab=23.52 E-value=33 Score=31.34 Aligned_cols=34 Identities=9% Similarity=-0.154 Sum_probs=23.3
Q ss_pred CcccCCCEEecCCeEEEEEccc-----eeeEEecCCCeE
Q 023761 221 PFVKVGDRVQKGQVLCIIEAMK-----LMNEIEADRSGT 254 (277)
Q Consensus 221 ~~VkvGd~V~kGqvL~~IEamK-----~~~eI~Ap~sG~ 254 (277)
..++.|+.|++||+|+.+-... -...|.+|.+|+
T Consensus 275 ~~~~~g~~v~~G~~L~~~~~~~~~~~~~~~~iv~P~~gv 313 (335)
T 1yw6_A 275 SDTLNFMPFEKGTLLAQDGEERFTVTHDVEYVLFPNPLV 313 (335)
T ss_dssp TTCCBTCEEETTCBCEECSSCCCBCCSSEEEEECCSSCC
T ss_pred cccCCcCCcCCCCEEEEeCCcceEeCCCCeEEEcCCCCC
Confidence 4579999999999999985432 122355555553
No 147
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=21.51 E-value=1.2e+02 Score=30.35 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=27.6
Q ss_pred cccCCCEEecCCeEEEEEccceeeEEe--cCCCeEEEEE
Q 023761 222 FVKVGDRVQKGQVLCIIEAMKLMNEIE--ADRSGTIVEI 258 (277)
Q Consensus 222 ~VkvGd~V~kGqvL~~IEamK~~~eI~--Ap~sG~V~~I 258 (277)
.+++||.|..|++++.+.-....+.|. ..+.|+|.++
T Consensus 122 ~~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 122 MVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred ccccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 589999999999999986544445542 3367888876
No 148
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=21.28 E-value=65 Score=29.12 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=20.3
Q ss_pred eEEEEEecCCCCccCCCCeEEEEc
Q 023761 253 GTIVEIIAEDRKPVSVDTPLFVIE 276 (277)
Q Consensus 253 G~V~~IlVe~Gd~V~~GqpL~~Ie 276 (277)
|.-.++++++|+.|..|++|++|+
T Consensus 70 ~~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 70 GYRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp SEEEEEECCTTCEECTTCEEEEEE
T ss_pred CEEEEEEcCCCCEecCCcEEEEEE
Confidence 444567899999999999999985
Done!