BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023762
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ZY7|A Chain A, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
 pdb|1ZY7|B Chain B, Crystal Structure Of The Catalytic Domain Of An Adenosine
           Deaminase That Acts On Rna (hadar2) Bound To Inositol
           Hexakisphosphate (ihp)
          Length = 403

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 150/284 (52%), Gaps = 38/284 (13%)

Query: 4   ECWGDEVSKKVLWQYKSLPKK-GKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIG 60
           +   D VS+ VL ++  L      P  R   VLA  ++++ +  KD +V+++ TGTKCI 
Sbjct: 23  QVLADAVSRLVLGKFGDLTDNFSSPHARR-KVLAGVVMTTGTDVKDAKVISVSTGTKCIN 81

Query: 61  RSLLSPHGDIVNDSHAEIVARRALLRFFYTEV---LNKQKCSNGIEGLRDDVFNNFLFEL 117
              +S  G  +ND HAEI++RR+LLRF YT++   LN +           D     +F+ 
Sbjct: 82  GEYMSDRGLALNDCHAEIISRRSLLRFLYTQLELYLNNK-----------DDQKRSIFQK 130

Query: 118 GPTGKYRFREGWQLHLYISQLPCGDASLSSCHS------APRNFFSREGNSLSSVDELNG 171
              G +R +E  Q HLYIS  PCGDA + S H       A R+   +    L +  E   
Sbjct: 131 SERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESG- 189

Query: 172 FKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSS 229
             +G    ++    +Q   G  +G+  L++SCSDKIARWN VG+QG+LLS F++P+Y SS
Sbjct: 190 --EGTI-PVRSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSS 246

Query: 230 ITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVL 273
           I +G            +HL R++Y RI  + E+L   + +NK L
Sbjct: 247 IILG-------SLYHGDHLSRAMYQRISNI-EDLPPLYTLNKPL 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.136    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,543,108
Number of Sequences: 62578
Number of extensions: 358028
Number of successful extensions: 713
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 3
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)