Query 023762
Match_columns 277
No_of_seqs 112 out of 399
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023762.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023762hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 2.1E-81 4.6E-86 599.5 23.4 249 5-276 1-261 (374)
2 KOG2777 tRNA-specific adenosin 100.0 2.4E-75 5.2E-80 570.8 18.6 249 4-275 172-430 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 5.6E-68 1.2E-72 501.7 11.6 214 51-276 1-227 (343)
4 COG0590 CumB Cytosine/adenosin 73.7 17 0.00037 30.9 7.4 32 48-88 40-71 (152)
5 PRK10860 tRNA-specific adenosi 49.7 16 0.00036 31.7 3.0 13 74-86 61-73 (172)
6 cd01285 nucleoside_deaminase N 45.3 25 0.00054 27.7 3.2 16 131-146 68-83 (109)
7 PF15134 DUF4570: Domain of un 32.0 28 0.00061 28.3 1.5 23 70-95 10-32 (109)
8 cd01283 cytidine_deaminase Cyt 30.9 29 0.00062 27.4 1.4 18 130-147 65-87 (112)
9 PF14737 DUF4470: Domain of un 26.4 50 0.0011 25.6 2.1 46 45-90 23-77 (100)
10 PF11334 DUF3136: Protein of u 19.3 51 0.0011 24.3 0.7 24 245-268 27-51 (64)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=2.1e-81 Score=599.47 Aligned_cols=249 Identities=46% Similarity=0.714 Sum_probs=209.1
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecCC-CCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHH
Q 023762 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (277)
Q Consensus 5 ~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~-~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (277)
.|||+||++|+++|++||++|||..+||||||||||+.+. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 4899999999999999999999999999999999999865 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCCCC--CCC-
Q 023762 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFF--SRE- 159 (277)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~~--~~~- 159 (277)
|+||||+||+++.+ +..+.||+..+++ +|+||+||+||||||++|||||||+.+.....+.. .+.
T Consensus 81 f~r~l~~el~~~~~-----------~~~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNS-----------SSEDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhc-----------cCCCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 99999999998752 1134577776655 99999999999999999999999998765433210 000
Q ss_pred -----CCCCCcccccCCccccccccccccceeeeCCCCC--CcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 023762 160 -----GNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (277)
Q Consensus 160 -----~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGrg--d~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivi 232 (277)
...+......+|+.+ ++..|+|||||||| ++|+||||||||||||||||||||||||||||||+||||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~~-----~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTVP-----VRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCccc-----ccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 001111122344332 56789999999999 569999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeeee
Q 023762 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHML 276 (277)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~~ 276 (277)
|.... + +++|+|||++|+..+ ..||.+|++|+|.+++
T Consensus 225 g~~~~-----~-~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~ 261 (374)
T smart00552 225 GKSLY-----S-AEHLERALYGRLDPL-DGLPTPFRVNRPLISL 261 (374)
T ss_pred cCccC-----C-HHHHHHHHHhhhccc-ccCCCccccccceeec
Confidence 96332 1 579999999999987 6799999999999864
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-75 Score=570.79 Aligned_cols=249 Identities=44% Similarity=0.718 Sum_probs=212.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecC-CCCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHHH
Q 023762 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP-SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARR 82 (277)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~-~~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR 82 (277)
..++|+||++|+++|++|+++++|..++||||||||++.. ..+.+||||||||||++++.|+.+|.+||||||||||||
T Consensus 172 ~~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR 251 (542)
T KOG2777|consen 172 STLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARR 251 (542)
T ss_pred ChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHH
Confidence 4589999999999999999999999999999999999873 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCC-ceEeeCCcEEEEEeccCCCCccccccCcCCCCC--CC---
Q 023762 83 ALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTG-KYRFREGWQLHLYISQLPCGDASLSSCHSAPRN--FF--- 156 (277)
Q Consensus 83 ~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~--~~--- 156 (277)
||+||||+||+++.+. ..++||+..++| +|+||+||.||||||++|||||+++.......+ ..
T Consensus 252 ~llRfLy~eL~l~~~~-----------~~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~ 320 (542)
T KOG2777|consen 252 GLLRFLYSELQLYNSE-----------KKDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNS 320 (542)
T ss_pred HHHHHHHHHHHHhhcc-----------CCCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCc
Confidence 9999999999998621 134677766655 699999999999999999999999987654333 11
Q ss_pred CCCCCCCCcccccCCccccccccccccceeeeCCCC--CCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCC
Q 023762 157 SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGR 234 (277)
Q Consensus 157 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPGr--gd~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivig~ 234 (277)
+.....++....++|+.. ++..+.||||||| |++++||||||||+|||||||||||||||++||||+|||||.
T Consensus 321 ~~~~~~~~~~~~g~g~~~-----~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~ 395 (542)
T KOG2777|consen 321 TRRGQLRTKIESGEGTIP-----VGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGK 395 (542)
T ss_pred hhhhccchhhhccccccc-----cCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEecc
Confidence 111122233344555443 6778999999999 899999999999999999999999999999999999999997
Q ss_pred CCCCCCCCChHHHHHHHHhhhccc-cccCCCCCceecceeee
Q 023762 235 SPNTSEDFPLEEHLKRSLYDRILP-LSEELSSPFQVNKVLHM 275 (277)
Q Consensus 235 ~~~~~~~~~~~~~l~Ral~~R~~~-~~~~lp~~y~~~~p~~~ 275 (277)
..++ .++|.|||+.|+.. +. .+|.+|.+|+|+++
T Consensus 396 ~~~~------~~~L~rAi~~R~~~~~~-~lp~~~~~n~p~~~ 430 (542)
T KOG2777|consen 396 SLHS------PEHLSRAIHGRLSNFLG-NLPPPYILNPPLLS 430 (542)
T ss_pred ccCC------HHHHHHHHhcccccccC-CCCCceeecCcccc
Confidence 5443 36999999999998 55 49999999999876
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=5.6e-68 Score=501.71 Aligned_cols=214 Identities=45% Similarity=0.754 Sum_probs=117.8
Q ss_pred EEeeCCCcccCCccCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeC--CCCceEeeCC
Q 023762 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (277)
Q Consensus 51 SLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (277)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+....++ ....++|+.. .+++|+||+|
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~~-------~~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGSG-------DKESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH--------HHHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCCc-------cccCceEeecCCCCceeEeCCC
Confidence 799999999999999999999999999999999999999999988632110 0123566654 5679999999
Q ss_pred cEEEEEeccCCCCccccccCcCCCCCC--CCCCCCC---CCccc---ccCCcccc---ccccccccceeeeCCCCCCccc
Q 023762 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSREGNS---LSSVD---ELNGFKDG---IYDSLQHIGRVQRKPGRGDTTL 197 (277)
Q Consensus 129 v~lhlYiS~~PCGdAsi~~~~~~~~~~--~~~~~~~---~~~~~---~~~g~~~~---~~~~~~~~g~vrtKPGrgd~t~ 197 (277)
|+||||||++|||||||+.......+. ....... ..... ...+.... -...++..|++||||||||++.
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~~ 153 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKITGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRTP 153 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEETSSSEEE--SS----------HHHHH-----TT---E
T ss_pred eEEEEEeccCccCccccccccccccccccccccccccccccccCCCcccCCCccccccccccccCCceeeeeccccCCCc
Confidence 999999999999999999886521110 0000000 00000 00010000 1124688999999999999999
Q ss_pred ccchhhHHHHHHHhhhhhhhhhcccccceeceEEeCCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeeee
Q 023762 198 SVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHML 276 (277)
Q Consensus 198 smSCSDKlarWnvlGlQGaLLS~~iePiylssivig~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~~ 276 (277)
|||||||||+|||+||||||||+|||||||+|||||..+. ++ +++|+|||++|+......+|.||+++.|.|++
T Consensus 154 smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~~-~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 154 SMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----FS-QEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred ceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----CC-HHHHHhhhhcccccccccCCCCceecCcceee
Confidence 9999999999999999999999999999999999997652 11 47999999999966667899999999998874
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=73.69 E-value=17 Score=30.85 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEEeeCCCcccCCccCCCCCccchhHHHHHHHHHHHHHH
Q 023762 48 EVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (277)
Q Consensus 48 ~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L 88 (277)
++|+-|-++..-..+ ... ||||+|.|.+-+-+
T Consensus 40 ~ii~~~~N~~~~~~d-------pta--HAEi~air~a~~~~ 71 (152)
T COG0590 40 EIIARGHNRREEDND-------PTA--HAEILAIRAAAETL 71 (152)
T ss_pred CEEEEecCccccCCC-------ccc--cHHHHHHHHHHHhh
Confidence 677777766544322 121 99999999885444
No 5
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=49.70 E-value=16 Score=31.69 Aligned_cols=13 Identities=46% Similarity=0.319 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHH
Q 023762 74 SHAEIVARRALLR 86 (277)
Q Consensus 74 ~HAEVLARR~f~r 86 (277)
.|||+.|.|...+
T Consensus 61 ~HAEi~Ai~~a~~ 73 (172)
T PRK10860 61 AHAEIMALRQGGL 73 (172)
T ss_pred cCHHHHHHHHHHH
Confidence 6999999987643
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=45.27 E-value=25 Score=27.71 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.6
Q ss_pred EEEEeccCCCCccccc
Q 023762 131 LHLYISQLPCGDASLS 146 (277)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (277)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 6799999999765553
No 7
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=31.98 E-value=28 Score=28.30 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=17.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhh
Q 023762 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (277)
Q Consensus 70 ~lhD~HAEVLARR~f~r~Ly~el~~~ 95 (277)
-|++-|.|||++|.+ |+.++++.
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 478899999999987 56666553
No 8
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=30.89 E-value=29 Score=27.36 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=13.7
Q ss_pred EEEEEec-----cCCCCcccccc
Q 023762 130 QLHLYIS-----QLPCGDASLSS 147 (277)
Q Consensus 130 ~lhlYiS-----~~PCGdAsi~~ 147 (277)
..-+|+| -+|||.++-..
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~l 87 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQVL 87 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHHH
Confidence 4568888 89999877643
No 9
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=26.36 E-value=50 Score=25.63 Aligned_cols=46 Identities=33% Similarity=0.436 Sum_probs=29.9
Q ss_pred CCeEEEEEeeCC-----CcccCCccCCCC----CccchhHHHHHHHHHHHHHHHH
Q 023762 45 KDLEVVALGTGT-----KCIGRSLLSPHG----DIVNDSHAEIVARRALLRFFYT 90 (277)
Q Consensus 45 ~~~~vVSLgTGt-----Kc~~~~~l~~~G----~~lhD~HAEVLARR~f~r~Ly~ 90 (277)
+++.++-+|.|- +.+........+ -.|+|.++||+||--|+-.++.
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll~ 77 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLLL 77 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHHH
Confidence 467788888875 122111112223 3899999999999988777743
No 10
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=19.29 E-value=51 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=19.6
Q ss_pred HHHHHHHHh-hhccccccCCCCCce
Q 023762 245 EEHLKRSLY-DRILPLSEELSSPFQ 268 (277)
Q Consensus 245 ~~~l~Ral~-~R~~~~~~~lp~~y~ 268 (277)
++.++|.+| +|+..+...||.-|+
T Consensus 27 ~~~i~rTvCW~rL~~Lh~~LP~~Yk 51 (64)
T PF11334_consen 27 EEEIRRTVCWDRLETLHRSLPRRYK 51 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccC
Confidence 457888876 788888889999886
Done!