Query 023762
Match_columns 277
No_of_seqs 112 out of 399
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 12:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 4.4E-78 1.5E-82 580.0 16.7 251 4-275 23-284 (403)
2 1p6o_A Cytosine deaminase; hyd 58.9 2.2 7.5E-05 35.3 0.3 15 131-145 85-99 (161)
3 1wwr_A TRNA adenosine deaminas 54.6 4.8 0.00016 33.7 1.6 16 131-146 93-108 (171)
4 2b3j_A TRNA adenosine deaminas 53.2 5.9 0.0002 32.5 2.0 15 131-145 77-91 (159)
5 1z3a_A TRNA-specific adenosine 52.5 6.8 0.00023 32.5 2.3 15 131-145 79-93 (168)
6 2a8n_A Cytidine and deoxycytid 52.1 8.4 0.00029 30.9 2.7 15 132-146 75-89 (144)
7 2g84_A Cytidine and deoxycytid 48.7 10 0.00035 32.2 2.8 13 74-86 78-90 (197)
8 2nx8_A TRNA-specific adenosine 48.3 12 0.00041 31.4 3.2 15 131-145 86-100 (179)
9 1wkq_A Guanine deaminase; doma 46.2 13 0.00045 30.7 3.1 14 73-86 59-72 (164)
10 3dh1_A TRNA-specific adenosine 45.2 13 0.00045 31.5 2.9 15 74-88 74-88 (189)
11 2nyt_A Probable C->U-editing e 38.7 16 0.00056 31.0 2.5 13 73-85 62-74 (190)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.4e-78 Score=580.04 Aligned_cols=251 Identities=37% Similarity=0.613 Sum_probs=201.0
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEecCC--CCeEEEEEeeCCCcccCCccCCCCCccchhHHHHHHH
Q 023762 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS--KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (277)
Q Consensus 4 ~~~ad~Ia~~v~~~y~~L~~~gkp~~~ewtvLA~iVl~~~~--~~~~vVSLgTGtKc~~~~~l~~~G~~lhD~HAEVLAR 81 (277)
..|||+||++|+++|++|++++||...|||||||||++.+. ++++||||||||||+++++++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 46899999999999999999999999999999999999752 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCcccccCCCCcceeEeeCCCCceEeeCCcEEEEEeccCCCCccccccCcCCCCCCCC-C--
Q 023762 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFS-R-- 158 (277)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAsi~~~~~~~~~~~~-~-- 158 (277)
|||+||||+||+.+.... . ....+||++.++|+|+||+||+||||||++|||||||+.+.+...+... .
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~-~~~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------D-DQKRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------H-HHHHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------c-CCCCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998764100 0 1134588888889999999999999999999999999876443211000 0
Q ss_pred ----CCCCCCcccccCCccccccccccccceeeeCCC--CCCcccccchhhHHHHHHHhhhhhhhhhcccccceeceEEe
Q 023762 159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (277)
Q Consensus 159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vrtKPG--rgd~t~smSCSDKlarWnvlGlQGaLLS~~iePiylssivi 232 (277)
.+..+..+..++|..+. ...+.++|+|| ||++|+||||||||||||||||||||||+|+|||||+||||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~-----~~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPV-----RSNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEEC-----CSSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCC-----CCcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 01111122223332221 11234567777 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCChHHHHHHHHhhhccccccCCCCCceecceeee
Q 023762 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKVLHM 275 (277)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ral~~R~~~~~~~lp~~y~~~~p~~~ 275 (277)
|+.++ .++|+||+++|+..+ ..||.||++|+|.|.
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~ 284 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLS 284 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccc
Confidence 98754 479999999999886 469999999999875
No 2
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=58.92 E-value=2.2 Score=35.31 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.2
Q ss_pred EEEEeccCCCCcccc
Q 023762 131 LHLYISQLPCGDASL 145 (277)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (277)
..||+|..||+-++.
T Consensus 85 ~tlYvT~EPC~mC~~ 99 (161)
T 1p6o_A 85 TTLYTTLSPCDMCTG 99 (161)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred cccccCCCCCHHHHH
Confidence 468999999984443
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=54.62 E-value=4.8 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=12.4
Q ss_pred EEEEeccCCCCccccc
Q 023762 131 LHLYISQLPCGDASLS 146 (277)
Q Consensus 131 lhlYiS~~PCGdAsi~ 146 (277)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999866553
No 4
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=53.24 E-value=5.9 Score=32.48 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=11.8
Q ss_pred EEEEeccCCCCcccc
Q 023762 131 LHLYISQLPCGDASL 145 (277)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (277)
..||+|..||+-++.
T Consensus 77 ~tlyvT~EPC~mC~~ 91 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAG 91 (159)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 468999999976554
No 5
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=52.48 E-value=6.8 Score=32.52 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 023762 131 LHLYISQLPCGDASL 145 (277)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (277)
.-||+|-.||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 368999999975544
No 6
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=52.05 E-value=8.4 Score=30.89 Aligned_cols=15 Identities=27% Similarity=0.642 Sum_probs=11.8
Q ss_pred EEEeccCCCCccccc
Q 023762 132 HLYISQLPCGDASLS 146 (277)
Q Consensus 132 hlYiS~~PCGdAsi~ 146 (277)
-||+|..||+-++.-
T Consensus 75 tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 75 DLYVTLEPCTMCAAA 89 (144)
T ss_dssp EEEEEECCBHHHHHH
T ss_pred EEEECCCChHHHHHH
Confidence 689999999866553
No 7
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=48.71 E-value=10 Score=32.25 Aligned_cols=13 Identities=38% Similarity=0.368 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHH
Q 023762 74 SHAEIVARRALLR 86 (277)
Q Consensus 74 ~HAEVLARR~f~r 86 (277)
.||||.|.|..-+
T Consensus 78 ~HAE~~Ai~~a~~ 90 (197)
T 2g84_A 78 AHAEILALSLAQA 90 (197)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 5999999986543
No 8
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=48.32 E-value=12 Score=31.40 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=11.5
Q ss_pred EEEEeccCCCCcccc
Q 023762 131 LHLYISQLPCGDASL 145 (277)
Q Consensus 131 lhlYiS~~PCGdAsi 145 (277)
.-||+|-.||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 469999999965544
No 9
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=46.25 E-value=13 Score=30.71 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHH
Q 023762 73 DSHAEIVARRALLR 86 (277)
Q Consensus 73 D~HAEVLARR~f~r 86 (277)
-.|||+.|.|...+
T Consensus 59 ~~HAE~~AI~~a~~ 72 (164)
T 1wkq_A 59 TAHAEVTAIRKACK 72 (164)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 47999999987654
No 10
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=45.17 E-value=13 Score=31.48 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 023762 74 SHAEIVARRALLRFF 88 (277)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (277)
.||||.|.|...+++
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 699999999887665
No 11
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=38.73 E-value=16 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHH
Q 023762 73 DSHAEIVARRALL 85 (277)
Q Consensus 73 D~HAEVLARR~f~ 85 (277)
-.|||+.|.|.+.
T Consensus 62 ~~HAE~~Ai~~a~ 74 (190)
T 2nyt_A 62 AAHAEEAFFNTIL 74 (190)
T ss_pred CcCHHHHHHHHHH
Confidence 3899999987664
Done!