BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023765
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 290 bits (741), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 146/205 (71%), Positives = 164/205 (80%), Gaps = 10/205 (4%)
Query: 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAED 60
MSSRSSRT+YVGNLPGD R REVEDLF KYGP+V IDLK+PPRPPGYAF+EF+D RDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV---------SRRSDYR 111
AI GRDGY+FDG+RLRVELAHGGRR S + G SRRS++R
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171
VLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD G TG+VDYT Y+DMKYA++KLD +E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 172 FRNAFSRSYVRVREYDSRRSYSRSP 196
FRNAFS YVRVREYDSR+ SRSP
Sbjct: 181 FRNAFSNGYVRVREYDSRKD-SRSP 204
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 134/204 (65%), Gaps = 15/204 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+YRV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVRE 185
KDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK- 193
Query: 186 YDSRRSYSRSPSRSPYYSRSRSRS 209
RSP Y RSRSRS
Sbjct: 194 --------VDGPRSPSYGRSRSRS 209
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/179 (54%), Positives = 124/179 (69%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSR--GVSRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+YRV+V+GLP S SWQDL
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDL 136
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 137 KDHMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 192
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 123/179 (68%), Gaps = 6/179 (3%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV--SRRSDYRVLVTGLPSSASWQDL 126
++DGYRLRVE GR + R SRRS+ RV+V+GLP S SWQDL
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDL 137
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVR 184
KDHMR AGDVC++ V+RD TG+V++ +DM YA+RKLD ++FR + +Y+RV+
Sbjct: 138 KDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 193
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 97/196 (49%), Positives = 125/196 (63%), Gaps = 21/196 (10%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
+ +YVGNLPGD R +EVED+F+KYG I +D+K R P +AF+EFED+RDAEDA+R
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRA 65
Query: 65 RDGYNFDGYRLRVE--------------LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDY 110
RDGY FDG R+RVE L GG G RR+ Y
Sbjct: 66 RDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGR--GGGPQRRTGY 123
Query: 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170
RV+V GLP + SWQDLKDHMR AGDVC++ V RD TG+V++T Y+D+KYA+RKLD +
Sbjct: 124 RVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD---GTGVVEFTRYEDVKYAVRKLDDT 180
Query: 171 EFR-NAFSRSYVRVRE 185
+FR + +Y+RVRE
Sbjct: 181 KFRSHEGETAYIRVRE 196
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 170 bits (431), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 124/189 (65%), Gaps = 16/189 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R ++VED+FYKYG I DIDLK P +AF+EFED RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGV------------SRRSDYRVLVTG 116
++DGYRLRVE GR GG G SRRS+YRV+V+G
Sbjct: 77 DYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIVSG 136
Query: 117 LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NA 175
LP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKLD ++FR +
Sbjct: 137 LPPSGSWQDLKDHMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 193
Query: 176 FSRSYVRVR 184
+Y+RV+
Sbjct: 194 GETAYIRVK 202
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/198 (50%), Positives = 125/198 (63%), Gaps = 25/198 (12%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++ED+FYKYG I DIDLK P +AF+EFED RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGYRLRVEL-----------------AHGGRRHSSSMDRYSSYSSGGSRG----VSRR 107
++DGYRLRVE GG G RG SRR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167
S+YRV+V+GLP S SWQDLKDHMR AGDVC++ VFRD TG+V++ +DM YA+RKL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD---GTGVVEFVRKEDMTYAVRKL 194
Query: 168 DRSEFR-NAFSRSYVRVR 184
D ++FR + +Y+RV+
Sbjct: 195 DNTKFRSHEGETAYIRVK 212
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/179 (52%), Positives = 122/179 (68%), Gaps = 16/179 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGYRLRVEL--AHGGRRHSSSMDRYSSYSSGGSRGV-SRRSDYRVLVTGLPSSASWQD 125
++ RLRVE +GGR + G G +RRSD+RVLV+GLP S SWQD
Sbjct: 77 DYGQCRLRVEFPRTYGGR---------GGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQD 127
Query: 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 183
LKDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 128 LKDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 183
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/178 (52%), Positives = 121/178 (67%), Gaps = 14/178 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVEL--AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126
++ RLRVE A+GGR R +RRSD+RVLV+GLP S SWQDL
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRASRNGP--------PTRRSDFRVLVSGLPPSGSWQDL 127
Query: 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 183
KDHMR AGDVC++ V +D GM G+V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 128 KDHMREAGDVCYADVQKD--GM-GMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/176 (51%), Positives = 117/176 (66%), Gaps = 10/176 (5%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNLP D R +++EDLFYKYG I +I+LK +AF+ FED RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
++ RLRVE + R G + +RRSD+RVLV+GLP S SWQDLKD
Sbjct: 76 DYGQCRLRVEFPR------TYGGRGGWPRGGRNGPPTRRSDFRVLVSGLPPSGSWQDLKD 129
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRV 183
HMR AGDVC++ V +D GM V+Y +DM+YA+RKLD ++FR + SY+RV
Sbjct: 130 HMREAGDVCYADVQKDGVGM---VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRV 182
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQ 124
+ G R+ VE A G RR S S Y SG + G R++YR++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L R R+VE F YG I+++DLK GY F+EF+D RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYS---SGGSR-GVSRRSDYRVLVTGLPSSASWQ 124
+ G R+ VE A G RR S S Y SG + G R++YR++V L S SWQ
Sbjct: 59 DLCGERVIVEHARGPRRDGSYGSGRSGYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQ 118
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
DLKD+MR+AG+V ++ + R G++++ SY DMK A+ KLD +E
Sbjct: 119 DLKDYMRQAGEVTYADAHKGRKN-EGVIEFVSYSDMKRALEKLDGTEV 165
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 97/182 (53%), Gaps = 24/182 (13%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP R R++E F YG DI +K GY F+EFEDYRDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYS-------------SYSSGGSRGVSR-----RSDY 110
G R+ VE A G R S+ + + SR SR R++Y
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170
R++V L S SWQDLKD+MR+AG+V ++ + R G+V++ S DMK AI KLD +
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRN-EGVVEFASLSDMKTAIEKLDDT 179
Query: 171 EF 172
E
Sbjct: 180 EL 181
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 16/174 (9%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++++DLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRH---------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLP 118
G R+ VE A G RR S S +SG + G R++YR++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 16/174 (9%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L + R ++++ F YG ++ IDLK GY F+EFED RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGYRLRVELAHGGRRH---------SSSMDRYSSYSSGGSR-GVSRRSDYRVLVTGLP 118
G R+ VE A G RR S S +SG + G R+++R++V L
Sbjct: 59 ELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLS 118
Query: 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
S SWQDLKD MR+AG+V ++ ++R G++++ SY DMK A+ KLD +E
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTN-EGVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/170 (40%), Positives = 92/170 (54%), Gaps = 12/170 (7%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+++G L R ++VE F YG I DIDLK G+ F+EFED RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSS-YSSGGSRGVSR-----RSDYRVLVTGLPSSAS 122
R+ +E A R RYS +SS R R R++ R++V L S S
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
Query: 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
WQDLKD MR+AG+V F+ R + G+V++ SY D+K AI KL E
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLN-EGVVEFASYGDLKNAIEKLSGKEI 169
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 91/172 (52%), Gaps = 19/172 (11%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G LP R+VE F YG + D+ +K G+ F++F+D RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGYRLRVELA------HGGRRHSSSMDRYSSYSSGGSRGVSRR------SDYRVLVTG 116
G R+ +E + R S R ++ GG R S R + +R+++
Sbjct: 59 ELCGERVILEFPRRKVGYNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLVIDN 118
Query: 117 LPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167
L + SWQD+KDH+R+ G + +S+ + R IV +TS+DD++ A+ KL
Sbjct: 119 LSTRYSWQDIKDHIRKLGIEPTYSEAHK-RNVNQAIVCFTSHDDLRDAMNKL 169
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L+VG +P ++ D F YG I+D L G+ F+E ED RDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
F G R+ VE A S+ RR+ +R++V L SWQDLKD
Sbjct: 61 EFMGSRIVVEPAR----GERRRRENFRESAASKYPRPRRTGFRLIVENLSEDVSWQDLKD 116
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168
MR+AG+ F+ R+ G G+V++++ +DM+ A+ L+
Sbjct: 117 VMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F KYGP+ ++ + PPG+AF+EFED RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGYRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S +YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG
Sbjct: 38 SETKVYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRG 95
Query: 65 RDGYNFDGYRLRVELAHGGRRHS 87
DG G R+RVEL+ G R S
Sbjct: 96 LDGKVICGSRVRVELSTGMPRRS 118
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 101/227 (44%), Gaps = 27/227 (11%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
R ++VGN +TR ++E LF KYG + +D+K GYAF+ FED RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNFDGY---RLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL--VTGLPSSA 121
+ F GY RL VE A G R G ++ S + L + P
Sbjct: 57 NFPF-GYEKRRLSVEWAKGER----------GRPRGDAKAPSNLKPTKTLFVINFDPIRT 105
Query: 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181
D++ H G V ++ R+ V + + +D A+ RS+ +
Sbjct: 106 KEHDIEKHFEPYGKVTNVRIRRN----FSFVQFETQEDATKALEATQRSKILDRVVSVEY 161
Query: 182 RVREYDSR--RSYSRSPSRSPYYSRSRSRSPYYSRSRSPSRSWSYSP 226
+++ D R R+ RSP RS R SP Y R SP + SP
Sbjct: 162 ALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSPGQGRRPSP 208
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHGGRRHS 87
G R+RVEL+ G R S
Sbjct: 71 VICGSRVRVELSTGMPRRS 89
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 49/77 (63%), Gaps = 2/77 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL + E+E F YGP+ + + PPG+AF+EFED RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSV--WVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGYRLRVELAHGGRR 85
G R+RVEL++G +R
Sbjct: 70 TLCGCRVRVELSNGEKR 86
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVG LP D +E+E++F ++G I + + RPPG+AF+E++D RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGYRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL E+E F YGP+ + I PPG+AF+EFED RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGYRLRVELAHGGRRHS 87
G R+RVEL+ G R S
Sbjct: 71 VICGSRVRVELSTGMPRRS 89
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 83/189 (43%), Gaps = 36/189 (19%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+Y+G L +++E F YG I D+ LK G+ F+EF+D RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLK-----NGFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGYRLRVE-----------------------LAHGGRRHSSSMDRYSSYSSGGSRGVS 105
G R+ ++ ++ DR+ Y G R S
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 106 R-----RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDD 159
R + +RV+V L S SWQDLKD +RR G + +++ + ++ + + D
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPN--EALLCFATPSD 177
Query: 160 MKYAIRKLD 168
+K I K D
Sbjct: 178 LKRCIEKCD 186
>sp|Q01560|NOP3_YEAST Nucleolar protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=NPL3 PE=1 SV=1
Length = 414
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 31/171 (18%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRG 64
S+ L+V P D + E+ ++F +GP+ ++ + G+AF+EFE+ A AI
Sbjct: 123 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN-----GFAFVEFEEAESAAKAIEE 177
Query: 65 RDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124
G +F L V YS + +R YR+ + LP SWQ
Sbjct: 178 VHGKSFANQPLEV--------------VYSKLPA-------KR--YRITMKNLPEGCSWQ 214
Query: 125 DLKDHMRRAG-DVCFSQV-FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
DLKD R + FS V RD G TG +++ S + + A+ +L+ EFR
Sbjct: 215 DLKDLARENSLETTFSSVNTRDFDG-TGALEFPSEEILVEALERLNNIEFR 264
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 50/83 (60%), Gaps = 5/83 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 NFDGYRLRVELAHGGRRHSSSMD 91
+FDG R+ VE + G R S D
Sbjct: 68 DFDGSRITVEFSRGAPRGSRDFD 90
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHGGRRHSSSM 90
D G ++ ++ A G R+ + M
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQM 96
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Query: 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRG 64
+L+V N+ DTR ++ F +YGPIVD+ + + RP G+A+++FED RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGYRLRVELAHGGRRHSSSM 90
D G ++ ++ A G R+ + M
Sbjct: 71 LDRKWICGRQIEIQFAQGDRKTPNQM 96
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LYVG L TR R++E LF +YG + D+D+K YAF+EF D RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 NFDGYRLRVELAHGGRRHS 87
+FDG R+ VE + G R S
Sbjct: 68 DFDGSRITVEASRGAPRGS 86
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
LY+G +P + R R+VE YG I +I +K G+AF++FED RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--YRLRVELAHG 82
+G RL VE+A G
Sbjct: 59 TMEGSSMRLVVEMARG 74
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPR--PPGYAFLEFEDYRDAED 60
++ R +YVGNL R E+++ + G +++ ++ P G A +E+ +A
Sbjct: 73 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 132
Query: 61 AIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120
AI+ F G R+ R ++ S S S G D ++ V LP +
Sbjct: 133 AIKTLSNQKFMG---RLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYN 189
Query: 121 ASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172
WQDLKD R+AG D+ +Q R RG GIV +S + +AI+ L ++F
Sbjct: 190 VRWQDLKDLFRQAGSVIRADIQMNQEGRSRG--IGIVVMSSMKEAMHAIQMLHNTDF 244
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAI 62
S +YVGNLP T R + DLF G ++ + P R G+ ++FE+ DA +I
Sbjct: 308 CSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSI 367
Query: 63 RGRDGYNFDGYRLRVELAH 81
+GY + G L++ AH
Sbjct: 368 EKLNGYRYGGRPLQLSYAH 386
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
G + VE + + S+ + V + + + Q+L+
Sbjct: 59 KLHGVNINVEASKNKSKASTKLH----------------------VGNISPTCTNQELRA 96
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
G V + +D V +D AIR LD +EF+
Sbjct: 97 KFEEYGPVIECDIVKDY----AFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 26/163 (15%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
+++RTL++GNL T ++ ++F ++G IVDID+K P YAFL++ D AI+
Sbjct: 436 KATRTLFIGNLEKTTTYHDLRNIFQRFGEIVDIDIKKVNGVPQYAFLQYCDIASVCKAIK 495
Query: 64 GRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASW 123
DG RL++ G+ ++ V + GL S+ S
Sbjct: 496 KMDGEYLGNNRLKLGF---GKSMPTNC---------------------VWLDGLSSNVSD 531
Query: 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166
Q L H R G V +V DR +V Y+ +D + A+++
Sbjct: 532 QYLTRHFCRYGPVV--KVVFDRLKGMALVLYSEIEDAQAAVKE 572
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63
R +R L+VGNLP + R ++ + F +YG + + + +P R F D+ D + A +
Sbjct: 3 RETRHLWVGNLPENVREEKIIEHFKRYGRVESVKI-LPKRGSEGGVAAFVDFVDIKSAQK 61
Query: 64 GRDGYNFDGYR-LRVELAHGGRRHSSS--MDRYSSYSS 98
+ N G R LR + G S++ +D S +S
Sbjct: 62 AHNSVNKMGDRDLRTDYNEPGTIPSAARGLDETVSIAS 99
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 120/308 (38%), Gaps = 70/308 (22%)
Query: 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66
+ ++ GN D R ++E LF KYG + +D+K G+AF+ ED RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYNF--DGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQ 124
+ F G RLRVE R D+ S S S R S ++ + +
Sbjct: 57 RFEFGRKGRRLRVEWTKSER----GGDKRSGGGSRRSSSSMRPSKTLFVINFDADNTRTR 112
Query: 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184
DL+ H G + ++ R+ + Y + +D A+ + S+ + V+
Sbjct: 113 DLEKHFEPYGKIVNVRIRRN----FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVK 168
Query: 185 EYDSRRS------------------------------YSRSPSRSPYYSRSRSRSPYYSR 214
+ D+R + Y R S Y + R+ SP Y R
Sbjct: 169 DDDARGNGHSPERRRDRSPERRRRSPSPYKRERGSPDYGRGASPVAAYRKERT-SPDYGR 227
Query: 215 SRSPS---------------RSWSYSPRSR---------SYSPRGKYSRRSPSLSPARSA 250
RSPS R + SPR R S SP K R SP+ SP +
Sbjct: 228 RRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKE 287
Query: 251 SQRSPSGS 258
S R+ G
Sbjct: 288 SPRNGVGE 295
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
G + VE + + S+ + V + + + Q+L+
Sbjct: 59 KLHGVNINVEASKNKSKASTKLH----------------------VGNISPTCTNQELRA 96
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
G V + +D V +D AIR LD +EF+
Sbjct: 97 KFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
G + VE + + S+ + V + + + Q+L+
Sbjct: 59 KLHGVNINVEASKNKSKASTKLH----------------------VGNISPTCTNQELRA 96
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
G V + +D V +D AIR LD +EF+
Sbjct: 97 KFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
G + VE + + S+ + V + + + Q+L+
Sbjct: 59 KLHGVNINVEASKNKSKASTKLH----------------------VGNISPTCTNQELRA 96
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
G V + +D V +D AIR LD +EF+
Sbjct: 97 KFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELAHGGRRHSSSM-DRYSSYSSG 99
RG D F G R+ V+L+ R + M D+ Y G
Sbjct: 129 RGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCG 166
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 31/165 (18%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
L++GNLP + +E+ LF +YG +++ D+ Y F+ ED AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKD 128
G + VE + + S+ + V + + + Q+L+
Sbjct: 59 KLHGVNINVEASKNKSKASTKLH----------------------VGNISPTCTNQELRA 96
Query: 129 HMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173
G V + +D V +D AIR LD +EF+
Sbjct: 97 KFEEYGPVIECDIVKDY----AFVHMERAEDAVEAIRGLDNTEFQ 137
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62
S++S L+VGN+ +E+ F +YGP+++ D+ YAF+ E DA +AI
Sbjct: 74 SKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDI-----VKDYAFVHMERAEDAVEAI 128
Query: 63 RGRDGYNFDGYRLRVELA 80
RG D F G R+ V+L+
Sbjct: 129 RGLDNTEFQGKRMHVQLS 146
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis
thaliana GN=RSZ22 PE=1 SV=1
Length = 200
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G + + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 NFDGYRLRVELAHG 82
N G+ RVE +H
Sbjct: 62 N--GW--RVEQSHN 71
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis
thaliana GN=RSZ22A PE=1 SV=1
Length = 196
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68
+YVGNL RE+ED F +G I + + RPPGYAFL+FED RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 NFDGYRLRVELAH 81
N G+ RVE +H
Sbjct: 62 N--GW--RVEQSH 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,587,719
Number of Sequences: 539616
Number of extensions: 5011013
Number of successful extensions: 28723
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 859
Number of HSP's that attempted gapping in prelim test: 17389
Number of HSP's gapped (non-prelim): 5639
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)