Query 023765
Match_columns 277
No_of_seqs 284 out of 2576
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.3E-34 8E-39 229.8 18.0 163 4-188 13-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 2.4E-33 8.1E-38 221.9 19.8 179 4-184 2-202 (205)
3 1fxl_A Paraneoplastic encephal 100.0 6.2E-33 2.1E-37 213.0 20.0 154 5-178 1-161 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 9.7E-33 3.3E-37 212.2 20.6 150 5-174 2-158 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 1E-32 3.5E-37 211.5 20.4 158 7-186 1-164 (166)
6 1l3k_A Heterogeneous nuclear r 100.0 2.1E-32 7.3E-37 215.6 19.7 167 4-190 11-184 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 9.9E-32 3.4E-36 223.7 24.5 179 3-186 6-280 (282)
8 2yh0_A Splicing factor U2AF 65 100.0 1.5E-31 5E-36 211.1 24.0 178 4-189 2-194 (198)
9 3nmr_A Cugbp ELAV-like family 100.0 7E-32 2.4E-36 208.7 17.8 151 5-174 2-163 (175)
10 2qfj_A FBP-interacting repress 100.0 2E-31 6.8E-36 213.2 20.3 172 5-189 27-205 (216)
11 2g4b_A Splicing factor U2AF 65 100.0 2.7E-31 9.4E-36 204.9 20.1 154 4-185 2-170 (172)
12 2adc_A Polypyrimidine tract-bi 100.0 4E-31 1.4E-35 213.4 21.3 177 4-187 32-226 (229)
13 1qm9_A Polypyrimidine tract-bi 100.0 3E-31 1E-35 209.5 18.7 168 5-175 2-187 (198)
14 2cjk_A Nuclear polyadenylated 100.0 3.7E-32 1.3E-36 208.8 12.6 158 4-188 1-165 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 5.2E-32 1.8E-36 209.7 11.8 162 3-188 10-173 (175)
16 3sde_A Paraspeckle component 1 100.0 4.2E-30 1.4E-34 211.3 18.1 156 4-188 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 1.3E-29 4.5E-34 211.1 19.7 165 4-189 93-264 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 9.8E-30 3.3E-34 212.7 18.6 166 5-188 116-290 (292)
19 3smz_A Protein raver-1, ribonu 100.0 2.9E-29 1E-33 209.0 20.9 151 4-188 20-174 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 3.2E-29 1.1E-33 209.6 18.6 154 4-189 39-197 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.2E-24 7.7E-29 154.8 9.5 109 5-125 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.5E-22 5.1E-27 176.9 13.3 163 13-187 4-180 (437)
23 3pgw_S U1-70K; protein-RNA com 99.9 3.2E-21 1.1E-25 168.5 18.6 82 4-85 100-184 (437)
24 3lqv_A PRE-mRNA branch site pr 99.9 1.8E-22 6E-27 145.0 8.7 105 3-135 5-109 (115)
25 4fxv_A ELAV-like protein 1; RN 99.9 3.8E-22 1.3E-26 139.0 9.6 78 5-82 18-98 (99)
26 2lxi_A RNA-binding protein 10; 99.9 1.5E-21 5.1E-26 133.9 8.0 80 6-85 1-85 (91)
27 1x4a_A Splicing factor, argini 99.9 6E-21 2.1E-25 135.6 11.4 83 3-85 19-101 (109)
28 2hvz_A Splicing factor, argini 99.9 2.1E-21 7.1E-26 136.1 8.9 100 7-118 1-100 (101)
29 2kn4_A Immunoglobulin G-bindin 99.8 2.4E-20 8.1E-25 141.5 14.8 138 42-190 10-151 (158)
30 2wbr_A GW182, gawky, LD47780P; 99.8 5.6E-21 1.9E-25 126.9 9.7 75 4-81 5-79 (89)
31 2i2y_A Fusion protein consists 99.8 9.3E-21 3.2E-25 142.5 11.9 138 42-189 10-148 (150)
32 3s8s_A Histone-lysine N-methyl 99.8 6.6E-21 2.3E-25 135.2 10.1 81 3-83 3-86 (110)
33 1sjq_A Polypyrimidine tract-bi 99.8 6E-21 2E-25 132.8 9.5 81 3-86 13-95 (105)
34 2fy1_A RNA-binding motif prote 99.8 3E-20 1E-24 133.3 13.1 84 2-85 3-88 (116)
35 1whw_A Hypothetical protein ri 99.8 3.5E-20 1.2E-24 129.3 13.1 83 3-85 5-90 (99)
36 2cpf_A RNA binding motif prote 99.8 1.3E-20 4.6E-25 131.2 10.5 83 3-85 2-90 (98)
37 3r27_A HnRNP L, heterogeneous 99.8 1.4E-20 4.7E-25 129.6 9.9 78 4-84 19-98 (100)
38 2dnz_A Probable RNA-binding pr 99.8 5.9E-20 2E-24 127.1 12.8 83 3-85 2-87 (95)
39 2a3j_A U1 small nuclear ribonu 99.8 2.4E-20 8.4E-25 135.3 10.9 81 4-84 27-111 (127)
40 2x1f_A MRNA 3'-END-processing 99.8 2.8E-20 9.4E-25 129.0 10.7 80 5-84 1-83 (96)
41 2lkz_A RNA-binding protein 5; 99.8 6.2E-21 2.1E-25 131.4 7.3 79 4-82 7-94 (95)
42 2cqi_A Nucleolysin TIAR; RNA r 99.8 7E-20 2.4E-24 128.7 12.9 83 3-85 12-95 (103)
43 2dgx_A KIAA0430 protein; RRM d 99.8 3.4E-20 1.2E-24 128.5 10.6 81 4-84 7-91 (96)
44 2dnm_A SRP46 splicing factor; 99.8 3.3E-20 1.1E-24 130.4 10.6 82 4-85 11-95 (103)
45 1x5t_A Splicing factor 3B subu 99.8 4.6E-20 1.6E-24 127.9 11.2 83 3-85 2-88 (96)
46 2dgo_A Cytotoxic granule-assoc 99.8 8.5E-20 2.9E-24 130.9 12.8 84 4-87 13-99 (115)
47 2dgs_A DAZ-associated protein 99.8 8.7E-20 3E-24 127.3 12.5 82 3-85 7-91 (99)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.6E-20 1.2E-24 130.0 10.6 83 4-86 10-95 (102)
49 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-20 9.6E-25 126.0 9.7 79 3-81 4-85 (85)
50 2dgv_A HnRNP M, heterogeneous 99.8 2.9E-20 9.9E-25 127.9 9.8 83 3-85 5-88 (92)
51 3md1_A Nuclear and cytoplasmic 99.8 3.1E-20 1.1E-24 125.2 9.7 78 6-83 1-81 (83)
52 1x5u_A Splicing factor 3B subu 99.8 7.3E-20 2.5E-24 129.1 11.9 82 4-85 13-97 (105)
53 2ad9_A Polypyrimidine tract-bi 99.8 3.8E-20 1.3E-24 132.0 10.3 82 3-87 28-111 (119)
54 2cq3_A RNA-binding protein 9; 99.8 1.4E-19 4.9E-24 127.1 12.9 82 4-85 13-95 (103)
55 2cq1_A PTB-like protein L; RRM 99.8 7.2E-20 2.5E-24 127.4 11.1 79 4-85 13-93 (101)
56 2d9p_A Polyadenylate-binding p 99.8 5.7E-20 2E-24 129.2 10.8 83 3-85 12-95 (103)
57 2do4_A Squamous cell carcinoma 99.8 6E-20 2.1E-24 128.3 10.8 81 4-84 15-97 (100)
58 2e5h_A Zinc finger CCHC-type a 99.8 5.7E-20 2E-24 126.9 10.5 78 4-81 14-94 (94)
59 3bs9_A Nucleolysin TIA-1 isofo 99.8 3E-20 1E-24 126.4 9.0 79 4-82 4-85 (87)
60 4a8x_A RNA-binding protein wit 99.8 4.9E-20 1.7E-24 125.6 10.0 81 4-84 2-86 (88)
61 1nu4_A U1A RNA binding domain; 99.8 1.5E-20 5.2E-25 130.7 7.6 84 1-84 3-90 (97)
62 1x4d_A Matrin 3; structural ge 99.8 1.7E-20 5.7E-25 130.5 7.7 79 3-84 12-93 (102)
63 1x5s_A Cold-inducible RNA-bind 99.8 5E-20 1.7E-24 129.2 10.3 82 4-85 10-94 (102)
64 2div_A TRNA selenocysteine ass 99.8 3.9E-20 1.3E-24 129.1 9.6 83 2-84 5-95 (99)
65 2do0_A HnRNP M, heterogeneous 99.8 1.6E-19 5.4E-24 129.3 12.9 83 3-85 12-96 (114)
66 1wex_A Hypothetical protein (r 99.8 7.6E-20 2.6E-24 128.1 10.9 79 4-85 13-93 (104)
67 2cq0_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 130.0 9.5 82 4-85 13-97 (103)
68 2cph_A RNA binding motif prote 99.8 9.6E-20 3.3E-24 128.9 11.4 82 4-85 13-99 (107)
69 2dgu_A Heterogeneous nuclear r 99.8 2.3E-19 7.9E-24 126.0 13.0 79 4-87 9-87 (103)
70 1x4c_A Splicing factor, argini 99.8 1.5E-19 5.1E-24 128.1 11.7 78 4-85 13-95 (108)
71 2cqd_A RNA-binding region cont 99.8 4.2E-19 1.4E-23 127.5 14.1 82 3-85 14-98 (116)
72 2dnq_A RNA-binding protein 4B; 99.8 1.7E-19 5.7E-24 123.5 11.4 78 3-85 5-82 (90)
73 1p27_B RNA-binding protein 8A; 99.8 5.5E-20 1.9E-24 130.0 9.2 81 4-84 21-104 (106)
74 2dgt_A RNA-binding protein 30; 99.8 1.9E-19 6.6E-24 123.7 11.7 78 3-85 7-84 (92)
75 1x4h_A RNA-binding protein 28; 99.8 2E-19 6.8E-24 128.2 12.0 82 4-85 13-103 (111)
76 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.5E-24 127.8 10.8 82 4-85 13-99 (105)
77 2cpz_A CUG triplet repeat RNA- 99.8 8.7E-20 3E-24 130.9 10.0 82 4-85 23-107 (115)
78 2ywk_A Putative RNA-binding pr 99.8 6.7E-20 2.3E-24 126.9 8.9 79 4-82 14-94 (95)
79 1s79_A Lupus LA protein; RRM, 99.8 7.3E-20 2.5E-24 128.1 9.1 78 4-82 9-88 (103)
80 2cqc_A Arginine/serine-rich sp 99.8 6.6E-20 2.2E-24 126.9 8.7 79 4-82 13-94 (95)
81 2jvr_A Nucleolar protein 3; RN 99.8 8.5E-20 2.9E-24 129.1 9.3 79 4-83 26-105 (111)
82 1why_A Hypothetical protein ri 99.8 1.7E-19 5.8E-24 125.3 10.7 78 4-84 15-94 (97)
83 1wi8_A EIF-4B, eukaryotic tran 99.8 1.3E-19 4.6E-24 127.5 10.2 80 4-85 13-96 (104)
84 3p5t_L Cleavage and polyadenyl 99.8 1.4E-20 4.6E-25 129.0 4.9 79 7-85 2-85 (90)
85 2dgp_A Bruno-like 4, RNA bindi 99.8 1.6E-19 5.5E-24 127.6 10.6 83 3-85 10-98 (106)
86 2dnp_A RNA-binding protein 14; 99.8 1.6E-19 5.5E-24 123.6 10.1 77 4-85 7-83 (90)
87 2kxn_B Transformer-2 protein h 99.8 8.3E-20 2.9E-24 133.3 9.1 81 4-84 44-127 (129)
88 1oo0_B CG8781-PA, drosophila Y 99.8 1.3E-19 4.4E-24 128.9 9.8 81 4-84 24-107 (110)
89 3ucg_A Polyadenylate-binding p 99.8 2.4E-19 8.4E-24 122.4 10.7 79 5-84 5-86 (89)
90 3ulh_A THO complex subunit 4; 99.8 1.4E-19 4.8E-24 128.1 9.5 78 4-81 27-106 (107)
91 2cpi_A CCR4-NOT transcription 99.8 6.2E-20 2.1E-24 130.7 7.7 81 4-84 13-102 (111)
92 3ns6_A Eukaryotic translation 99.8 3.3E-20 1.1E-24 129.5 6.1 79 4-82 4-92 (100)
93 3ex7_B RNA-binding protein 8A; 99.8 1.6E-19 5.5E-24 131.6 9.9 83 4-86 20-105 (126)
94 1x4f_A Matrin 3; structural ge 99.8 1E-19 3.4E-24 128.4 8.4 80 3-85 22-104 (112)
95 2jrs_A RNA-binding protein 39; 99.8 1.3E-19 4.3E-24 128.3 8.9 81 3-83 23-106 (108)
96 2err_A Ataxin-2-binding protei 99.8 1.8E-19 6.2E-24 127.8 9.6 80 4-83 27-107 (109)
97 2nlw_A Eukaryotic translation 99.8 2.3E-19 7.8E-24 126.4 9.9 80 4-83 13-100 (105)
98 2khc_A Testis-specific RNP-typ 99.8 1.8E-19 6.1E-24 129.8 9.5 78 4-81 38-118 (118)
99 2la6_A RNA-binding protein FUS 99.8 1.6E-19 5.6E-24 125.8 8.9 78 4-81 11-99 (99)
100 1x4g_A Nucleolysin TIAR; struc 99.8 5E-19 1.7E-23 125.6 11.5 79 4-85 23-101 (109)
101 2dng_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 125.0 10.7 81 3-85 12-95 (103)
102 2cpe_A RNA-binding protein EWS 99.8 3E-19 1E-23 127.6 10.4 82 4-85 13-105 (113)
103 2cpj_A Non-POU domain-containi 99.8 2.8E-19 9.4E-24 124.7 9.9 79 4-85 13-91 (99)
104 2dhg_A TRNA selenocysteine ass 99.8 2.9E-19 9.9E-24 125.8 10.1 83 3-85 6-92 (104)
105 2dis_A Unnamed protein product 99.8 7.3E-19 2.5E-23 124.8 12.2 83 3-85 5-94 (109)
106 3s7r_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 120.8 10.4 77 3-80 8-87 (87)
107 2krb_A Eukaryotic translation 99.8 1.1E-19 3.8E-24 121.8 7.5 72 6-77 1-80 (81)
108 2jvo_A Nucleolar protein 3; nu 99.8 2.6E-19 8.9E-24 126.6 9.6 77 3-84 28-104 (108)
109 2xnq_A Nuclear polyadenylated 99.8 4.4E-19 1.5E-23 123.0 10.6 75 4-83 20-95 (97)
110 2cq2_A Hypothetical protein LO 99.8 3.5E-19 1.2E-23 125.6 9.9 80 2-84 21-107 (114)
111 2cpx_A Hypothetical protein FL 99.8 3.6E-19 1.2E-23 127.6 10.2 81 4-85 23-107 (115)
112 2fc9_A NCL protein; structure 99.8 2.8E-19 9.7E-24 125.1 9.4 81 4-85 13-93 (101)
113 2kt5_A RNA and export factor-b 99.8 6.9E-19 2.3E-23 127.9 11.6 83 4-86 33-117 (124)
114 2kvi_A Nuclear polyadenylated 99.8 2.4E-19 8.2E-24 124.2 8.7 78 3-85 7-85 (96)
115 2cpd_A Apobec-1 stimulating pr 99.8 9.4E-19 3.2E-23 122.0 11.8 77 4-85 13-91 (99)
116 3beg_B Splicing factor, argini 99.8 1.7E-19 6E-24 129.1 8.2 79 107-188 14-93 (115)
117 1u6f_A Tcubp1, RNA-binding pro 99.8 7.8E-19 2.7E-23 130.2 11.9 83 4-86 40-125 (139)
118 2ytc_A PRE-mRNA-splicing facto 99.8 4.4E-19 1.5E-23 120.1 9.5 75 4-81 10-85 (85)
119 2rs2_A Musashi-1, RNA-binding 99.8 8.4E-19 2.9E-23 124.3 11.2 80 4-84 23-105 (109)
120 3n9u_C Cleavage and polyadenyl 99.8 3.4E-19 1.2E-23 134.2 9.5 78 5-82 54-136 (156)
121 1whx_A Hypothetical protein ri 99.8 3.1E-19 1.1E-23 127.0 8.8 78 4-84 8-85 (111)
122 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.1E-19 2.1E-23 133.4 10.9 82 4-85 37-121 (156)
123 2e5j_A Methenyltetrahydrofolat 99.8 3.7E-19 1.3E-23 123.5 8.8 79 4-84 17-95 (97)
124 2mss_A Protein (musashi1); RNA 99.8 2.6E-19 8.8E-24 118.2 7.6 72 8-80 1-75 (75)
125 2dh8_A DAZ-associated protein 99.8 2.7E-19 9.1E-24 126.2 8.1 82 3-85 13-97 (105)
126 1p1t_A Cleavage stimulation fa 99.8 3.3E-19 1.1E-23 125.5 8.4 80 5-84 7-89 (104)
127 2cqp_A RNA-binding protein 12; 99.8 1.7E-19 5.9E-24 125.5 6.8 80 4-83 13-95 (98)
128 2la4_A Nuclear and cytoplasmic 99.8 3.3E-19 1.1E-23 124.8 8.2 76 4-82 25-100 (101)
129 2cqh_A IGF-II mRNA-binding pro 99.8 5.8E-19 2E-23 121.6 9.3 79 3-85 5-85 (93)
130 1x4e_A RNA binding motif, sing 99.8 9.5E-20 3.3E-24 123.4 5.1 79 3-81 2-83 (85)
131 2lea_A Serine/arginine-rich sp 99.8 3.4E-19 1.2E-23 131.2 8.2 83 4-86 45-130 (135)
132 2cq4_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 126.4 9.1 78 5-83 24-104 (114)
133 2kn4_A Immunoglobulin G-bindin 99.8 1.3E-18 4.5E-23 131.9 11.6 83 4-86 68-153 (158)
134 1wf1_A RNA-binding protein RAL 99.8 8.1E-19 2.8E-23 124.7 9.8 76 5-85 26-102 (110)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.8 2.9E-19 9.9E-24 124.8 7.2 78 4-83 17-98 (100)
136 1x4c_A Splicing factor, argini 99.8 7.5E-18 2.6E-22 119.3 14.5 82 104-188 10-92 (108)
137 2m2b_A RNA-binding protein 10; 99.8 5.7E-19 2E-23 129.5 9.0 82 3-85 20-110 (131)
138 1fjc_A Nucleolin RBD2, protein 99.8 2.5E-19 8.7E-24 124.2 6.7 79 4-84 14-92 (96)
139 2ek1_A RNA-binding protein 12; 99.8 1.5E-19 5E-24 125.1 5.5 79 4-82 13-94 (95)
140 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.4E-23 119.3 10.0 78 4-83 8-87 (91)
141 1wg1_A KIAA1579 protein, homol 99.8 5.6E-19 1.9E-23 120.3 7.8 77 3-83 2-78 (88)
142 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4E-19 1.4E-23 117.9 6.9 73 7-80 1-76 (77)
143 3egn_A RNA-binding protein 40; 99.8 4.1E-19 1.4E-23 132.4 7.7 83 3-85 42-132 (143)
144 2jwn_A Embryonic polyadenylate 99.8 1.4E-18 4.8E-23 126.3 10.4 80 5-85 35-117 (124)
145 2fc8_A NCL protein; structure 99.8 5.9E-19 2E-23 123.7 8.0 82 4-85 13-94 (102)
146 2ki2_A SS-DNA binding protein 99.8 1.9E-19 6.5E-24 123.2 5.3 78 7-85 2-82 (90)
147 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.6E-18 5.3E-23 128.7 10.6 77 4-80 61-140 (140)
148 1wg5_A Heterogeneous nuclear r 99.8 1.6E-18 5.3E-23 121.9 10.0 79 4-83 13-94 (104)
149 2cqg_A TDP-43, TAR DNA-binding 99.8 2.6E-18 9E-23 120.6 11.1 81 3-85 12-95 (103)
150 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8E-19 2.7E-23 133.9 9.1 82 4-85 70-154 (165)
151 1x4b_A Heterogeneous nuclear r 99.8 1.9E-18 6.5E-23 124.0 10.6 80 5-85 26-108 (116)
152 2e5g_A U6 snRNA-specific termi 99.8 2.8E-18 9.5E-23 118.4 10.8 78 4-84 6-83 (94)
153 2diu_A KIAA0430 protein; struc 99.8 3.1E-18 1.1E-22 114.7 10.6 75 4-85 6-86 (96)
154 2cpy_A RNA-binding protein 12; 99.8 8.1E-19 2.8E-23 125.5 8.1 79 4-83 13-94 (114)
155 3beg_B Splicing factor, argini 99.8 1.1E-18 3.8E-23 124.9 8.4 76 4-83 14-94 (115)
156 1x5o_A RNA binding motif, sing 99.8 1.5E-18 5.2E-23 124.1 8.9 79 4-82 23-111 (114)
157 1x5p_A Negative elongation fac 99.8 6.3E-18 2.1E-22 117.3 11.6 77 4-85 13-89 (97)
158 1wez_A HnRNP H', FTP-3, hetero 99.8 1.5E-18 5.2E-23 121.3 8.5 79 4-84 13-93 (102)
159 2i2y_A Fusion protein consists 99.8 1.7E-18 5.8E-23 130.1 9.2 78 4-83 71-148 (150)
160 2db1_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 125.7 7.2 78 4-82 15-97 (118)
161 2e44_A Insulin-like growth fac 99.8 3.6E-18 1.2E-22 118.3 9.7 79 4-83 13-92 (96)
162 1iqt_A AUF1, heterogeneous nuc 99.8 9.7E-19 3.3E-23 115.4 6.5 72 8-80 1-75 (75)
163 1fj7_A Nucleolin RBD1, protein 99.8 3.7E-19 1.3E-23 124.5 4.5 80 4-84 15-96 (101)
164 2f3j_A RNA and export factor b 99.8 3.2E-18 1.1E-22 131.7 9.7 81 4-84 86-168 (177)
165 3q2s_C Cleavage and polyadenyl 99.8 2.1E-18 7E-23 138.3 8.8 78 5-82 67-149 (229)
166 1wel_A RNA-binding protein 12; 99.8 2E-18 6.7E-23 125.4 7.8 78 4-82 23-103 (124)
167 2hgl_A HNRPF protein, heteroge 99.8 1.6E-18 5.3E-23 127.2 7.2 78 4-82 42-124 (136)
168 1sjr_A Polypyrimidine tract-bi 99.7 6.6E-18 2.3E-22 126.4 10.5 77 7-84 47-125 (164)
169 3zzy_A Polypyrimidine tract-bi 99.7 6.3E-18 2.2E-22 121.9 9.8 76 7-84 29-107 (130)
170 2dnn_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 118.9 9.8 75 6-82 16-92 (109)
171 2e5i_A Heterogeneous nuclear r 99.7 1.1E-17 3.7E-22 120.3 10.2 77 5-84 22-103 (124)
172 2hzc_A Splicing factor U2AF 65 99.7 6.9E-18 2.4E-22 114.6 8.5 74 2-79 2-86 (87)
173 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-17 4.8E-22 127.0 11.1 135 50-189 11-152 (165)
174 2lmi_A GRSF-1, G-rich sequence 99.7 2.5E-18 8.4E-23 121.5 6.4 79 3-82 8-91 (107)
175 2hgn_A Heterogeneous nuclear r 99.7 2.6E-18 9E-23 126.4 5.8 79 4-84 44-124 (139)
176 3d2w_A TAR DNA-binding protein 99.7 1.7E-17 5.8E-22 113.0 9.4 75 4-84 9-85 (89)
177 2dha_A FLJ20171 protein; RRM d 99.7 3.7E-18 1.3E-22 123.0 6.3 78 4-82 21-104 (123)
178 1wf0_A TDP-43, TAR DNA-binding 99.7 8E-18 2.7E-22 114.6 7.7 79 3-85 2-80 (88)
179 2hgm_A HNRPF protein, heteroge 99.7 1.3E-17 4.5E-22 120.3 8.3 77 4-82 40-120 (126)
180 2lcw_A RNA-binding protein FUS 99.6 4.3E-19 1.5E-23 127.4 0.0 82 4-85 5-97 (116)
181 2bz2_A Negative elongation fac 99.7 2.8E-17 9.7E-22 118.4 9.3 76 4-84 37-112 (121)
182 2dnl_A Cytoplasmic polyadenyla 99.7 6.1E-17 2.1E-21 115.7 10.9 76 3-81 5-86 (114)
183 2xs2_A Deleted in azoospermia- 99.7 8.2E-18 2.8E-22 117.8 5.9 79 4-84 7-87 (102)
184 2lea_A Serine/arginine-rich sp 99.7 1.7E-17 5.9E-22 122.0 7.9 119 46-189 5-127 (135)
185 4fxv_A ELAV-like protein 1; RN 99.7 1.3E-16 4.5E-21 110.8 11.2 75 109-187 19-97 (99)
186 2pe8_A Splicing factor 45; RRM 99.7 7.3E-17 2.5E-21 113.0 9.8 80 3-82 5-93 (105)
187 2jvr_A Nucleolar protein 3; RN 99.7 5.9E-17 2E-21 114.5 9.3 79 107-189 26-105 (111)
188 2j8a_A Histone-lysine N-methyl 99.7 3.7E-17 1.3E-21 115.8 7.6 77 7-83 3-96 (136)
189 4f02_A Polyadenylate-binding p 99.7 4.8E-17 1.7E-21 129.3 9.2 79 5-83 102-181 (213)
190 2qfj_A FBP-interacting repress 99.7 1E-16 3.6E-21 127.5 10.8 82 4-85 123-207 (216)
191 3md3_A Nuclear and cytoplasmic 99.7 1E-16 3.5E-21 122.0 9.8 78 4-81 85-165 (166)
192 2dit_A HIV TAT specific factor 99.7 2.9E-16 1E-20 111.7 10.0 80 4-84 13-103 (112)
193 2fy1_A RNA-binding motif prote 99.7 8.2E-16 2.8E-20 110.0 12.4 79 107-189 5-86 (116)
194 3u1l_A PRE-mRNA-splicing facto 99.7 8.5E-17 2.9E-21 128.3 7.9 78 4-84 132-230 (240)
195 1fje_B Nucleolin RBD12, protei 99.7 1.2E-16 3.9E-21 123.1 8.3 77 5-83 98-174 (175)
196 4f25_A Polyadenylate-binding p 99.7 4.9E-16 1.7E-20 111.1 10.8 78 108-189 4-83 (115)
197 2g4b_A Splicing factor U2AF 65 99.7 1.5E-16 5.1E-21 122.0 8.6 77 5-81 93-172 (172)
198 2yh0_A Splicing factor U2AF 65 99.7 2.3E-16 7.9E-21 123.8 9.7 81 4-84 112-195 (198)
199 2cjk_A Nuclear polyadenylated 99.7 1.5E-16 5.3E-21 121.3 8.5 78 5-83 86-166 (167)
200 2wbr_A GW182, gawky, LD47780P; 99.7 6.3E-16 2.1E-20 102.6 10.0 72 109-186 7-78 (89)
201 3ex7_B RNA-binding protein 8A; 99.7 3.5E-16 1.2E-20 113.8 9.6 80 106-189 19-102 (126)
202 1x4a_A Splicing factor, argini 99.7 2E-15 6.9E-20 106.8 13.2 83 104-190 17-100 (109)
203 3s8s_A Histone-lysine N-methyl 99.7 1.1E-15 3.9E-20 108.1 11.6 77 108-188 5-85 (110)
204 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.1E-15 1.4E-19 104.1 14.4 82 105-190 11-94 (103)
205 3v4m_A Splicing factor U2AF 65 99.7 3.7E-16 1.3E-20 109.5 8.7 81 2-82 1-96 (105)
206 2voo_A Lupus LA protein; RNA-b 99.7 4.4E-16 1.5E-20 121.5 9.7 78 6-84 109-188 (193)
207 1sjq_A Polypyrimidine tract-bi 99.7 6.5E-16 2.2E-20 107.3 9.5 77 107-189 14-92 (105)
208 2dnm_A SRP46 splicing factor; 99.7 1.5E-15 5.2E-20 106.4 11.5 82 104-189 8-93 (103)
209 3nmr_A Cugbp ELAV-like family 99.7 3.2E-16 1.1E-20 120.4 8.8 77 5-81 94-175 (175)
210 1l3k_A Heterogeneous nuclear r 99.6 4.9E-16 1.7E-20 121.7 9.7 81 5-86 103-186 (196)
211 1b7f_A Protein (SXL-lethal pro 99.6 5E-16 1.7E-20 118.5 9.3 77 4-80 87-168 (168)
212 2cq3_A RNA-binding protein 9; 99.6 5.2E-15 1.8E-19 103.6 13.7 83 104-190 10-94 (103)
213 1whw_A Hypothetical protein ri 99.6 2.8E-15 9.5E-20 104.2 12.3 80 107-190 6-89 (99)
214 2d9p_A Polyadenylate-binding p 99.6 1.9E-15 6.5E-20 105.9 11.2 82 105-190 11-94 (103)
215 2cq0_A Eukaryotic translation 99.6 3.4E-15 1.1E-19 104.6 12.4 81 106-190 12-96 (103)
216 2cpz_A CUG triplet repeat RNA- 99.6 7E-15 2.4E-19 105.1 14.1 81 106-190 22-106 (115)
217 2dnq_A RNA-binding protein 4B; 99.6 3.8E-15 1.3E-19 101.6 11.7 77 106-190 5-81 (90)
218 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.8E-20 106.1 9.1 77 107-189 13-92 (102)
219 2e5j_A Methenyltetrahydrofolat 99.6 2.9E-15 9.8E-20 103.7 11.2 80 105-189 15-94 (97)
220 2dgo_A Cytotoxic granule-assoc 99.6 1.5E-14 5.2E-19 103.3 15.3 82 105-190 11-96 (115)
221 2dgs_A DAZ-associated protein 99.6 3.9E-15 1.3E-19 103.5 11.8 80 106-190 7-90 (99)
222 2dgt_A RNA-binding protein 30; 99.6 5.5E-15 1.9E-19 101.2 12.3 77 106-190 7-83 (92)
223 2cqc_A Arginine/serine-rich sp 99.6 6.3E-15 2.1E-19 101.6 12.6 80 104-187 10-93 (95)
224 2dnz_A Probable RNA-binding pr 99.6 4.1E-15 1.4E-19 102.5 11.6 79 108-190 4-86 (95)
225 1fxl_A Paraneoplastic encephal 99.6 9.9E-16 3.4E-20 116.7 9.3 76 5-80 87-167 (167)
226 4a8x_A RNA-binding protein wit 99.6 2.5E-15 8.7E-20 102.0 10.3 76 109-188 4-84 (88)
227 2cqb_A Peptidyl-prolyl CIS-tra 99.6 2.8E-15 9.6E-20 104.8 10.8 80 107-190 10-93 (102)
228 1wi8_A EIF-4B, eukaryotic tran 99.6 4.3E-15 1.5E-19 104.2 11.7 81 104-190 10-95 (104)
229 2dgu_A Heterogeneous nuclear r 99.6 8.6E-15 2.9E-19 102.5 13.2 77 106-190 8-84 (103)
230 1x5s_A Cold-inducible RNA-bind 99.6 2.7E-15 9.4E-20 104.8 10.7 80 106-189 9-92 (102)
231 3r27_A HnRNP L, heterogeneous 99.6 3.6E-15 1.2E-19 102.5 10.9 76 107-188 19-96 (100)
232 2cpf_A RNA binding motif prote 99.6 3.8E-15 1.3E-19 103.3 11.2 79 108-190 4-89 (98)
233 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-15 4.8E-20 126.0 10.5 75 5-81 206-281 (282)
234 2dnp_A RNA-binding protein 14; 99.6 4.6E-15 1.6E-19 101.2 11.3 75 107-189 7-81 (90)
235 2do4_A Squamous cell carcinoma 99.6 1.2E-14 3.9E-19 101.3 13.4 81 106-190 14-97 (100)
236 2div_A TRNA selenocysteine ass 99.6 5.2E-15 1.8E-19 102.8 11.5 83 107-189 7-94 (99)
237 2dgx_A KIAA0430 protein; RRM d 99.6 5E-15 1.7E-19 102.3 11.3 79 107-189 7-90 (96)
238 2dng_A Eukaryotic translation 99.6 1.1E-14 3.6E-19 102.0 13.1 81 104-190 10-94 (103)
239 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.4E-15 1.5E-19 100.6 10.9 77 107-187 4-84 (87)
240 1why_A Hypothetical protein ri 99.6 5.7E-15 1.9E-19 102.2 11.5 77 107-189 15-93 (97)
241 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.5E-15 1.5E-19 100.1 10.6 75 107-185 5-83 (85)
242 1x4h_A RNA-binding protein 28; 99.6 9.5E-15 3.2E-19 103.7 12.8 82 105-190 11-102 (111)
243 2do0_A HnRNP M, heterogeneous 99.6 2.5E-14 8.4E-19 102.1 15.0 79 106-188 12-93 (114)
244 1x5u_A Splicing factor 3B subu 99.6 9.3E-15 3.2E-19 102.7 12.5 81 105-189 11-95 (105)
245 2e5h_A Zinc finger CCHC-type a 99.6 6.6E-15 2.3E-19 101.3 11.4 79 104-186 11-93 (94)
246 2dgp_A Bruno-like 4, RNA bindi 99.6 6.2E-15 2.1E-19 103.8 11.4 81 106-190 10-97 (106)
247 2cph_A RNA binding motif prote 99.6 9E-15 3.1E-19 103.1 12.1 83 104-190 10-98 (107)
248 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.9E-19 101.0 12.3 78 106-189 12-91 (101)
249 1x5t_A Splicing factor 3B subu 99.6 4.6E-15 1.6E-19 102.5 10.3 79 108-190 4-87 (96)
250 1x4g_A Nucleolysin TIAR; struc 99.6 9.3E-15 3.2E-19 103.4 11.9 78 107-190 23-100 (109)
251 1qm9_A Polypyrimidine tract-bi 99.6 1.6E-15 5.3E-20 119.1 8.7 78 4-83 118-197 (198)
252 2x1f_A MRNA 3'-END-processing 99.6 6.1E-15 2.1E-19 101.9 10.6 77 109-189 2-82 (96)
253 2dnh_A Bruno-like 5, RNA bindi 99.6 1.4E-14 4.7E-19 101.8 12.5 82 107-189 13-97 (105)
254 2cpd_A Apobec-1 stimulating pr 99.6 2E-14 7E-19 99.8 13.2 76 106-189 12-89 (99)
255 3md1_A Nuclear and cytoplasmic 99.6 9E-15 3.1E-19 98.1 10.9 75 110-188 2-80 (83)
256 1wex_A Hypothetical protein (r 99.6 5.5E-15 1.9E-19 103.3 10.1 78 106-189 12-91 (104)
257 2adc_A Polypyrimidine tract-bi 99.6 3.4E-15 1.2E-19 119.9 10.3 77 5-83 150-228 (229)
258 2hvz_A Splicing factor, argini 99.6 3.5E-15 1.2E-19 104.1 9.0 75 110-189 1-75 (101)
259 2jvo_A Nucleolar protein 3; nu 99.6 4.8E-15 1.6E-19 104.6 9.8 77 105-189 27-103 (108)
260 3tyt_A Heterogeneous nuclear r 99.6 1.3E-15 4.6E-20 120.0 7.7 76 5-80 122-204 (205)
261 2ad9_A Polypyrimidine tract-bi 99.6 4.4E-15 1.5E-19 105.7 9.5 78 106-189 28-107 (119)
262 1wf1_A RNA-binding protein RAL 99.6 1.1E-14 3.7E-19 103.2 11.6 74 107-188 25-99 (110)
263 2la6_A RNA-binding protein FUS 99.6 9E-15 3.1E-19 101.6 10.8 75 103-177 7-93 (99)
264 2dgv_A HnRNP M, heterogeneous 99.6 9.8E-15 3.3E-19 100.0 10.6 80 106-189 5-86 (92)
265 2ytc_A PRE-mRNA-splicing facto 99.6 1.2E-14 4.1E-19 98.0 10.8 75 105-185 8-83 (85)
266 2lxi_A RNA-binding protein 10; 99.6 2.2E-15 7.7E-20 102.9 7.1 76 110-189 2-83 (91)
267 2ywk_A Putative RNA-binding pr 99.6 1.3E-14 4.5E-19 100.0 11.1 78 105-186 12-92 (95)
268 1u6f_A Tcubp1, RNA-binding pro 99.6 4.7E-14 1.6E-18 104.3 14.8 82 104-189 37-122 (139)
269 2fc9_A NCL protein; structure 99.6 6.9E-15 2.4E-19 102.6 9.7 81 106-190 12-92 (101)
270 2cpi_A CCR4-NOT transcription 99.6 7.8E-15 2.7E-19 104.1 10.1 80 107-190 13-102 (111)
271 3ulh_A THO complex subunit 4; 99.6 1.5E-14 5.2E-19 101.9 11.6 79 103-185 23-104 (107)
272 2cpe_A RNA-binding protein EWS 99.6 1.4E-14 4.9E-19 103.1 11.3 81 106-190 12-104 (113)
273 2kxn_B Transformer-2 protein h 99.6 7.3E-15 2.5E-19 107.0 9.8 81 105-189 42-126 (129)
274 1p27_B RNA-binding protein 8A; 99.6 1.2E-14 4.1E-19 102.3 10.6 77 107-187 21-101 (106)
275 3tht_A Alkylated DNA repair pr 99.6 4.3E-15 1.5E-19 124.8 9.7 77 2-81 14-97 (345)
276 2e44_A Insulin-like growth fac 99.6 1.1E-14 3.7E-19 100.6 10.2 79 106-188 12-91 (96)
277 2lkz_A RNA-binding protein 5; 99.6 4.4E-15 1.5E-19 102.0 8.0 78 106-187 6-93 (95)
278 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-14 4E-19 108.8 10.9 81 107-189 44-124 (164)
279 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-14 4.3E-19 102.9 10.5 80 106-189 23-106 (110)
280 2cpj_A Non-POU domain-containi 99.6 1.6E-14 5.3E-19 100.4 10.7 78 106-189 12-89 (99)
281 2cpx_A Hypothetical protein FL 99.6 2E-14 6.8E-19 102.7 11.5 80 107-190 23-106 (115)
282 2cqp_A RNA-binding protein 12; 99.6 1E-14 3.6E-19 101.1 9.7 79 106-188 12-94 (98)
283 2dh8_A DAZ-associated protein 99.6 2.4E-14 8.1E-19 100.6 11.6 82 104-190 11-96 (105)
284 2cqh_A IGF-II mRNA-binding pro 99.6 7.6E-15 2.6E-19 100.8 8.7 77 107-190 6-84 (93)
285 2jrs_A RNA-binding protein 39; 99.6 2.2E-14 7.5E-19 101.2 11.2 80 105-188 22-105 (108)
286 2err_A Ataxin-2-binding protei 99.6 1.1E-14 3.7E-19 103.0 9.6 80 105-188 25-106 (109)
287 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.3E-14 1.1E-18 107.2 12.9 79 107-189 37-119 (156)
288 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.9E-14 9.8E-19 98.6 11.4 76 5-84 9-91 (100)
289 2cqd_A RNA-binding region cont 99.6 4.7E-14 1.6E-18 100.9 13.0 80 104-188 12-95 (116)
290 2dhg_A TRNA selenocysteine ass 99.6 2.7E-14 9.3E-19 100.1 11.4 80 106-189 6-90 (104)
291 2khc_A Testis-specific RNP-typ 99.6 3E-14 1E-18 102.3 11.6 71 105-175 36-110 (118)
292 2la4_A Nuclear and cytoplasmic 99.6 1.5E-14 5E-19 100.9 9.5 74 107-186 25-98 (101)
293 1s79_A Lupus LA protein; RRM, 99.6 2E-14 6.9E-19 100.3 10.0 72 108-180 10-84 (103)
294 2xnq_A Nuclear polyadenylated 99.6 2.8E-14 9.7E-19 98.6 10.6 75 105-187 18-93 (97)
295 3p5t_L Cleavage and polyadenyl 99.6 5.4E-15 1.8E-19 100.9 6.5 75 110-188 2-82 (90)
296 2kt5_A RNA and export factor-b 99.6 5E-14 1.7E-18 102.0 11.9 81 104-188 30-113 (124)
297 3ucg_A Polyadenylate-binding p 99.6 5.4E-14 1.8E-18 95.6 11.1 75 109-188 6-84 (89)
298 2a3j_A U1 small nuclear ribonu 99.6 2.8E-14 9.6E-19 103.3 10.0 78 107-188 27-109 (127)
299 2dgw_A Probable RNA-binding pr 99.5 8.6E-14 2.9E-18 95.0 11.8 78 106-189 7-87 (91)
300 1x5p_A Negative elongation fac 99.5 1.6E-13 5.5E-18 94.8 13.3 76 107-190 13-88 (97)
301 3lqv_A PRE-mRNA branch site pr 99.5 3.4E-14 1.2E-18 101.5 10.2 79 106-188 5-84 (115)
302 1x4e_A RNA binding motif, sing 99.5 5.4E-15 1.8E-19 99.7 5.6 68 108-175 4-75 (85)
303 2e5i_A Heterogeneous nuclear r 99.5 7.8E-14 2.7E-18 100.1 11.9 77 109-189 25-102 (124)
304 3ns6_A Eukaryotic translation 99.5 1.4E-14 4.8E-19 100.8 7.8 70 109-178 6-86 (100)
305 2kvi_A Nuclear polyadenylated 99.5 3.4E-14 1.2E-18 98.1 9.6 69 107-179 8-77 (96)
306 1x4f_A Matrin 3; structural ge 99.5 2.2E-14 7.6E-19 100.9 8.7 77 106-188 22-101 (112)
307 3s7r_A Heterogeneous nuclear r 99.5 8.4E-14 2.9E-18 94.2 11.4 74 106-184 8-85 (87)
308 2cq2_A Hypothetical protein LO 99.5 2E-14 6.7E-19 101.3 8.4 79 107-187 23-104 (114)
309 1jmt_A Splicing factor U2AF 35 99.5 1.9E-15 6.7E-20 105.7 3.1 69 12-80 21-103 (104)
310 2krb_A Eukaryotic translation 99.5 1.6E-14 5.5E-19 96.4 7.5 66 110-175 2-75 (81)
311 1whx_A Hypothetical protein ri 99.5 1.8E-14 6.1E-19 102.2 8.1 73 108-186 9-81 (111)
312 3n9u_C Cleavage and polyadenyl 99.5 5.4E-14 1.9E-18 105.7 11.1 76 108-187 54-135 (156)
313 2cq4_A RNA binding motif prote 99.5 5.4E-14 1.9E-18 100.3 10.6 77 107-188 23-103 (114)
314 2ek1_A RNA-binding protein 12; 99.5 1.3E-14 4.5E-19 100.0 7.1 76 107-186 13-92 (95)
315 2jwn_A Embryonic polyadenylate 99.5 6.8E-14 2.3E-18 101.3 11.1 77 108-189 35-115 (124)
316 3ue2_A Poly(U)-binding-splicin 99.5 2E-14 6.7E-19 102.6 7.9 79 4-82 18-108 (118)
317 2e5g_A U6 snRNA-specific termi 99.5 8.8E-14 3E-18 95.6 11.0 73 108-187 7-80 (94)
318 3zzy_A Polypyrimidine tract-bi 99.5 7.6E-14 2.6E-18 100.6 11.0 80 107-189 26-106 (130)
319 2cqg_A TDP-43, TAR DNA-binding 99.5 3.5E-13 1.2E-17 94.2 14.2 79 105-189 11-93 (103)
320 1p1t_A Cleavage stimulation fa 99.5 2.1E-14 7.2E-19 100.6 7.9 78 108-189 7-88 (104)
321 2nlw_A Eukaryotic translation 99.5 4.6E-14 1.6E-18 99.1 9.5 77 108-187 14-98 (105)
322 1x4b_A Heterogeneous nuclear r 99.5 8.6E-14 2.9E-18 99.5 11.1 79 107-190 25-107 (116)
323 1nu4_A U1A RNA binding domain; 99.5 2.8E-14 9.6E-19 98.7 8.2 80 106-189 5-89 (97)
324 1fjc_A Nucleolin RBD2, protein 99.5 2.8E-14 9.5E-19 98.5 8.0 79 106-189 13-91 (96)
325 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.1E-13 3.7E-18 102.4 11.7 77 104-184 58-138 (140)
326 1wg5_A Heterogeneous nuclear r 99.5 6.4E-14 2.2E-18 98.2 9.8 73 104-177 10-86 (104)
327 2dnn_A RNA-binding protein 12; 99.5 5.5E-14 1.9E-18 98.9 9.2 75 107-187 14-91 (109)
328 3s6e_A RNA-binding protein 39; 99.5 5.8E-14 2E-18 99.4 9.1 77 4-81 5-91 (114)
329 2m2b_A RNA-binding protein 10; 99.5 5.7E-14 2E-18 102.7 9.4 79 106-189 20-108 (131)
330 1x5o_A RNA binding motif, sing 99.5 2.5E-13 8.5E-18 96.8 12.4 82 106-187 22-110 (114)
331 3sde_A Paraspeckle component 1 99.5 3.7E-14 1.3E-18 116.1 9.2 81 4-84 94-180 (261)
332 2db1_A Heterogeneous nuclear r 99.5 7.4E-14 2.5E-18 100.1 9.5 78 105-187 13-96 (118)
333 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.1E-14 3.9E-19 101.3 5.0 78 104-187 14-96 (100)
334 2rs2_A Musashi-1, RNA-binding 99.5 1.4E-13 4.7E-18 97.2 10.3 79 107-190 23-105 (109)
335 2hgn_A Heterogeneous nuclear r 99.5 1.3E-14 4.3E-19 106.7 5.0 111 46-177 2-115 (139)
336 1wez_A HnRNP H', FTP-3, hetero 99.5 1.3E-13 4.5E-18 96.1 9.6 71 105-177 11-84 (102)
337 2diu_A KIAA0430 protein; struc 99.5 1.2E-13 4.3E-18 92.4 9.0 71 109-189 9-84 (96)
338 2fc8_A NCL protein; structure 99.5 3.3E-13 1.1E-17 94.1 11.6 79 105-190 11-93 (102)
339 2cpy_A RNA-binding protein 12; 99.5 8E-14 2.7E-18 99.3 8.5 78 106-188 12-93 (114)
340 2hgl_A HNRPF protein, heteroge 99.5 5.7E-14 1.9E-18 102.8 7.8 78 104-186 39-122 (136)
341 2mss_A Protein (musashi1); RNA 99.5 4.3E-14 1.5E-18 92.9 6.3 66 111-177 1-70 (75)
342 1wel_A RNA-binding protein 12; 99.5 8.9E-14 3E-18 100.7 8.5 74 104-178 20-97 (124)
343 2f3j_A RNA and export factor b 99.5 2.1E-13 7.2E-18 104.7 11.0 76 105-180 84-162 (177)
344 2hzc_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 92.8 9.2 65 108-175 5-80 (87)
345 1wg1_A KIAA1579 protein, homol 99.5 9E-14 3.1E-18 94.3 7.2 73 109-188 5-77 (88)
346 2dis_A Unnamed protein product 99.5 2.6E-13 8.9E-18 95.9 9.9 78 108-189 7-92 (109)
347 1uaw_A Mouse-musashi-1; RNP-ty 99.5 9.4E-14 3.2E-18 91.7 6.9 68 110-178 1-72 (77)
348 3q2s_C Cleavage and polyadenyl 99.5 2E-13 6.7E-18 109.3 10.0 76 108-187 67-148 (229)
349 3d2w_A TAR DNA-binding protein 99.5 3.4E-13 1.2E-17 91.5 9.4 77 106-189 8-84 (89)
350 1fj7_A Nucleolin RBD1, protein 99.5 2.8E-13 9.7E-18 94.3 9.0 78 107-189 15-95 (101)
351 2ki2_A SS-DNA binding protein 99.5 9.4E-14 3.2E-18 94.6 6.1 68 110-178 2-73 (90)
352 2lmi_A GRSF-1, G-rich sequence 99.5 1.1E-13 3.9E-18 97.4 6.6 71 106-177 8-84 (107)
353 2bz2_A Negative elongation fac 99.4 3.3E-13 1.1E-17 97.0 8.9 76 106-189 36-111 (121)
354 3egn_A RNA-binding protein 40; 99.4 4E-13 1.4E-17 99.7 9.6 79 107-189 43-130 (143)
355 2dha_A FLJ20171 protein; RRM d 99.4 3.1E-13 1.1E-17 97.1 7.4 68 107-175 21-95 (123)
356 1iqt_A AUF1, heterogeneous nuc 99.4 2.2E-13 7.4E-18 89.4 6.0 67 111-178 1-71 (75)
357 2hgm_A HNRPF protein, heteroge 99.4 5.5E-13 1.9E-17 96.0 8.6 73 105-179 38-115 (126)
358 1wf0_A TDP-43, TAR DNA-binding 99.4 3.3E-13 1.1E-17 91.5 6.3 74 108-190 4-79 (88)
359 2xs2_A Deleted in azoospermia- 99.4 8.8E-13 3E-17 92.0 8.1 68 107-176 7-77 (102)
360 2j8a_A Histone-lysine N-methyl 99.4 2.1E-12 7.3E-17 91.5 9.3 74 110-187 3-94 (136)
361 2lcw_A RNA-binding protein FUS 99.1 3.2E-14 1.1E-18 101.8 0.0 78 108-189 6-95 (116)
362 2voo_A Lupus LA protein; RNA-b 99.4 1.5E-11 5.3E-16 95.7 14.4 117 54-186 63-184 (193)
363 2dit_A HIV TAT specific factor 99.4 9.6E-12 3.3E-16 88.2 12.1 80 106-189 12-102 (112)
364 2dnl_A Cytoplasmic polyadenyla 99.4 8.4E-13 2.9E-17 94.0 6.4 59 108-167 7-72 (114)
365 2pe8_A Splicing factor 45; RRM 99.4 5.8E-12 2E-16 88.0 10.2 77 107-187 6-92 (105)
366 1owx_A Lupus LA protein, SS-B, 99.3 9.4E-12 3.2E-16 88.1 9.7 76 4-82 16-95 (121)
367 3u1l_A PRE-mRNA-splicing facto 99.3 1.1E-11 3.7E-16 98.9 8.3 65 106-172 131-204 (240)
368 2dnr_A Synaptojanin-1; RRM dom 99.2 3.1E-11 1.1E-15 80.1 8.3 74 5-84 6-87 (91)
369 3v4m_A Splicing factor U2AF 65 99.2 2.9E-11 1E-15 84.4 8.1 75 108-186 4-94 (105)
370 3tht_A Alkylated DNA repair pr 99.2 1.6E-11 5.6E-16 103.0 8.0 66 106-173 15-82 (345)
371 3s6e_A RNA-binding protein 39; 99.2 6.2E-11 2.1E-15 83.8 9.2 76 107-186 5-90 (114)
372 3ue2_A Poly(U)-binding-splicin 99.2 5.5E-11 1.9E-15 84.6 8.8 75 108-186 19-106 (118)
373 1owx_A Lupus LA protein, SS-B, 99.1 1.9E-10 6.6E-15 81.4 8.8 73 104-178 13-89 (121)
374 1jmt_A Splicing factor U2AF 35 99.1 2.7E-11 9.1E-16 84.5 3.1 64 114-177 20-98 (104)
375 2d9o_A DNAJ (HSP40) homolog, s 99.1 1.7E-09 5.7E-14 74.5 11.9 64 119-189 27-90 (100)
376 1ufw_A Synaptojanin 2; RNP dom 99.1 2.7E-10 9.4E-15 75.9 6.6 71 5-81 14-93 (95)
377 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.5E-14 86.2 9.2 78 5-82 123-212 (222)
378 2dnr_A Synaptojanin-1; RRM dom 98.9 3.6E-09 1.2E-13 70.2 7.4 70 109-187 7-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.9 1.4E-08 4.9E-13 68.9 8.6 72 5-79 20-96 (117)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.2E-08 4.3E-13 67.9 6.4 70 108-186 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 2E-07 7E-12 62.8 11.3 90 3-122 5-99 (104)
382 3dxb_A Thioredoxin N-terminall 98.4 4.4E-07 1.5E-11 72.0 7.5 57 122-178 142-206 (222)
383 1wey_A Calcipressin 1; structu 98.4 9.4E-07 3.2E-11 59.9 7.6 78 3-83 2-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.2 9.2E-06 3.1E-10 55.2 8.7 69 109-183 21-94 (117)
385 1uw4_A UPF3X; nonsense mediate 98.2 1.6E-05 5.6E-10 52.9 9.1 75 7-81 2-86 (91)
386 1whv_A Poly(A)-specific ribonu 98.1 9.8E-06 3.4E-10 53.9 6.5 55 6-66 16-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.0 5.3E-05 1.8E-09 52.8 8.5 72 5-81 23-95 (119)
388 3ctr_A Poly(A)-specific ribonu 97.9 1.3E-05 4.4E-10 53.5 5.0 54 7-66 7-60 (101)
389 2l08_A Regulator of nonsense t 97.7 0.00015 5.2E-09 48.5 6.8 77 5-81 8-94 (97)
390 1uw4_A UPF3X; nonsense mediate 97.6 0.00092 3.1E-08 44.4 9.7 67 110-176 2-74 (91)
391 1whv_A Poly(A)-specific ribonu 97.5 0.00077 2.6E-08 44.9 8.2 55 109-168 16-70 (100)
392 3p3d_A Nucleoporin 53; structu 97.4 0.00042 1.4E-08 49.0 6.2 76 4-81 5-97 (132)
393 1wey_A Calcipressin 1; structu 97.4 0.00081 2.8E-08 45.5 7.3 73 109-187 5-82 (104)
394 2dhx_A Poly (ADP-ribose) polym 97.3 0.0013 4.3E-08 44.4 7.9 70 109-187 8-82 (104)
395 3ctr_A Poly(A)-specific ribonu 97.3 0.0007 2.4E-08 45.2 6.1 55 109-168 6-60 (101)
396 1wwh_A Nucleoporin 35, nucleop 97.3 0.0015 5E-08 45.5 7.7 65 107-175 22-86 (119)
397 3pq1_A Poly(A) RNA polymerase; 97.1 0.00028 9.5E-09 61.4 3.6 56 5-63 52-107 (464)
398 2l08_A Regulator of nonsense t 96.6 0.0045 1.5E-07 41.4 5.5 70 109-178 9-84 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.5 0.0097 3.3E-07 51.7 3.8 55 109-165 53-107 (464)
400 3p3d_A Nucleoporin 53; structu 94.9 0.045 1.5E-06 38.6 5.1 66 109-176 7-90 (132)
401 3d45_A Poly(A)-specific ribonu 94.2 0.1 3.6E-06 46.2 7.0 56 6-67 440-495 (507)
402 4eyt_A Telomerase associated p 88.8 3.4 0.00012 26.7 8.1 69 4-79 10-78 (129)
403 3d45_A Poly(A)-specific ribonu 86.9 1.5 5.3E-05 38.7 7.1 55 109-168 440-494 (507)
404 2g0c_A ATP-dependent RNA helic 80.8 5.4 0.00019 24.8 5.9 68 8-81 2-75 (76)
405 3j21_T 50S ribosomal protein L 77.8 10 0.00035 24.5 6.4 55 9-63 25-81 (86)
406 3lpe_A Putative transcription 76.7 11 0.00038 24.6 6.6 35 32-68 39-73 (92)
407 4e8u_A Putative uncharacterize 76.6 4.1 0.00014 30.1 4.8 56 8-63 14-81 (172)
408 1vq8_S 50S ribosomal protein L 70.9 13 0.00046 23.8 5.7 54 9-62 24-79 (85)
409 3ts2_A Protein LIN-28 homolog 65.8 1 3.5E-05 32.6 -0.5 28 21-53 2-29 (148)
410 3j21_T 50S ribosomal protein L 61.8 29 0.00099 22.3 7.5 57 111-167 24-83 (86)
411 3u5e_X 60S ribosomal protein L 57.8 42 0.0014 23.8 6.7 57 111-167 80-139 (142)
412 4a17_R RPL23A, 60S ribosomal p 57.7 46 0.0016 23.8 6.9 57 111-167 88-147 (150)
413 4a17_R RPL23A, 60S ribosomal p 57.6 26 0.00088 25.2 5.6 53 10-62 90-144 (150)
414 2zkr_s 60S ribosomal protein L 56.5 28 0.00096 25.2 5.7 54 10-63 96-151 (156)
415 3u5e_X 60S ribosomal protein L 55.5 26 0.0009 24.9 5.3 53 10-62 82-136 (142)
416 3iz5_X 60S ribosomal protein L 53.4 23 0.0008 25.4 4.8 54 10-63 92-147 (152)
417 2f06_A Conserved hypothetical 52.2 57 0.002 22.7 11.9 49 123-172 86-135 (144)
418 4eyt_A Telomerase associated p 50.7 47 0.0016 21.3 7.6 55 109-167 12-66 (129)
419 3iz5_X 60S ribosomal protein L 48.8 46 0.0016 23.9 5.7 56 111-166 90-148 (152)
420 3h7h_B Transcription elongatio 46.1 32 0.0011 23.1 4.4 36 32-69 40-75 (106)
421 2e5p_A Protein PHF1, PHD finge 46.1 11 0.00036 22.9 1.7 12 45-56 37-48 (68)
422 2m0o_A PHD finger protein 1; t 42.4 12 0.00041 23.3 1.6 12 45-56 54-65 (79)
423 3fut_A Dimethyladenosine trans 42.0 22 0.00076 28.4 3.6 31 7-38 111-141 (271)
424 1vq8_S 50S ribosomal protein L 41.9 66 0.0023 20.5 6.6 54 112-165 24-80 (85)
425 3p8b_B Transcription antitermi 41.9 68 0.0023 22.8 6.0 34 33-68 33-66 (152)
426 2eqj_A Metal-response element- 41.9 13 0.00045 22.5 1.7 12 44-55 40-51 (66)
427 2zkr_s 60S ribosomal protein L 41.8 96 0.0033 22.4 6.9 56 111-166 94-152 (156)
428 1nz8_A Transcription antitermi 39.4 87 0.003 21.2 6.2 24 44-67 61-89 (119)
429 1ytr_A Bacteriocin plantaricin 38.2 18 0.00063 16.6 1.5 13 19-31 13-25 (26)
430 3uzu_A Ribosomal RNA small sub 36.5 13 0.00045 29.8 1.5 33 6-38 114-146 (279)
431 2cs4_A Protein C12ORF2; GTP bi 35.0 24 0.00082 23.2 2.3 22 11-32 21-43 (95)
432 3fry_A Probable copper-exporti 34.7 72 0.0025 18.8 5.6 56 6-65 6-61 (73)
433 2yko_A LINE-1 ORF1P; RNA-bindi 34.4 58 0.002 25.3 4.7 74 6-79 52-148 (233)
434 2od0_A Hypothetical protein VP 32.4 43 0.0015 22.2 3.4 28 18-50 4-31 (105)
435 4hcz_A PHD finger protein 1; p 31.2 26 0.00088 20.6 1.7 12 45-56 31-42 (58)
436 1i4w_A Mitochondrial replicati 31.0 52 0.0018 27.4 4.3 22 8-29 144-165 (353)
437 2exu_A Transcription initiatio 30.7 54 0.0019 24.8 4.0 36 33-70 139-174 (200)
438 4e8u_A Putative uncharacterize 30.0 1.5E+02 0.005 21.8 6.0 48 110-158 13-73 (172)
439 1qyr_A KSGA, high level kasuga 29.0 36 0.0012 26.7 2.9 30 7-36 91-120 (252)
440 2cfx_A HTH-type transcriptiona 29.0 1.4E+02 0.0049 20.6 6.8 47 123-169 78-124 (144)
441 2kcm_A Cold shock domain famil 29.0 18 0.00061 22.5 0.8 38 45-82 12-54 (74)
442 2cu1_A Mitogen-activated prote 28.8 1.3E+02 0.0044 19.9 5.5 65 13-83 23-88 (103)
443 3ftd_A Dimethyladenosine trans 28.4 32 0.0011 27.0 2.4 30 7-36 96-125 (249)
444 2npt_B Mitogen-activated prote 27.8 83 0.0028 20.5 3.8 62 12-79 34-96 (100)
445 2c60_A Human mitogen-activated 27.8 75 0.0026 21.0 3.6 61 13-79 46-107 (111)
446 3tqs_A Ribosomal RNA small sub 27.3 16 0.00056 28.8 0.6 31 8-38 98-128 (255)
447 2k5n_A Putative cold-shock pro 27.0 26 0.00087 21.8 1.3 10 45-54 14-23 (74)
448 3swz_A Steroid 17-alpha-hydrox 26.9 1E+02 0.0035 26.3 5.7 59 9-74 17-79 (494)
449 2ns6_A Mobilization protein A; 26.8 1.1E+02 0.0036 22.8 5.0 44 10-53 74-125 (185)
450 4bby_A Alkyldihydroxyacetoneph 26.7 43 0.0015 30.5 3.3 53 13-65 350-408 (658)
451 2w7a_A LINE-1 ORF1P; RNA-bindi 25.5 17 0.0006 24.1 0.4 72 7-78 4-98 (100)
452 2nn4_A Hypothetical protein YQ 24.5 29 0.001 21.4 1.2 17 19-35 4-20 (72)
453 1eij_A Hypothetical protein MT 23.9 54 0.0018 20.7 2.4 20 12-31 50-69 (80)
454 3cam_A Cold-shock domain famil 23.3 33 0.0011 20.7 1.3 9 45-53 13-21 (67)
455 3ulj_A LIN28B, DNA-binding pro 23.2 32 0.0011 22.3 1.3 9 45-53 20-28 (90)
456 1c9o_A CSPB, cold-shock protei 22.9 34 0.0012 20.5 1.3 10 45-54 13-22 (66)
457 3tbg_A Cytochrome P450 2D6; mo 22.8 64 0.0022 27.3 3.6 48 10-63 20-70 (479)
458 4a4j_A Pacszia, cation-transpo 22.5 1.2E+02 0.004 17.3 4.9 54 7-63 4-60 (69)
459 3a0j_A Cold shock protein; OB- 22.1 36 0.0012 21.0 1.3 10 45-54 13-22 (73)
460 2gu3_A YPMB protein; APC1927, 21.9 76 0.0026 22.2 3.2 45 11-55 68-128 (136)
461 2ns6_A Mobilization protein A; 21.1 2.5E+02 0.0087 20.7 6.1 49 109-157 70-127 (185)
462 2rf4_B DNA-directed RNA polyme 21.0 81 0.0028 20.1 2.7 27 4-30 17-43 (87)
463 1g6p_A Cold shock protein TMCS 20.8 40 0.0014 20.2 1.3 10 45-54 12-21 (66)
464 2kpo_A Rossmann 2X2 fold prote 20.7 72 0.0025 19.9 2.4 47 18-74 33-80 (110)
465 3bbo_V Ribosomal protein L23; 20.5 26 0.0009 26.1 0.5 55 9-63 133-189 (198)
466 1ik9_C DNA ligase IV; DNA END 20.3 75 0.0026 16.6 2.2 16 15-30 19-34 (37)
467 2inr_A DNA topoisomerase 4 sub 20.1 1.9E+02 0.0064 25.5 5.8 94 6-132 275-375 (514)
468 2jrh_A Mitogen-activated prote 20.0 1.8E+02 0.0063 18.6 5.1 66 12-83 18-84 (94)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.3e-34 Score=229.77 Aligned_cols=163 Identities=23% Similarity=0.335 Sum_probs=142.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5788999999999999999999999999999999964 5678899999999999999999999999999999999997
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechh
Q 023765 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fv~f~~~~ 158 (277)
....... .....+|||+|||..+++++|.++|.+||.|..|.|+.+..+ +||||+|.+.+
T Consensus 93 ~~~~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 93 QRDPSLR------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE 154 (213)
T ss_dssp CCCTHHH------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHH
T ss_pred ccccccc------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHH
Confidence 7532111 112468999999999999999999999999999999887543 59999999999
Q ss_pred HHHHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
+|++|+..|||..++| ..|.|..+..
T Consensus 155 ~a~~Ai~~lng~~~~g----~~i~V~~a~~ 180 (213)
T 4f02_A 155 AAERAIEKMNGMLLND----RKVFVGRFKS 180 (213)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCC
T ss_pred HHHHHHHHhCCCEECC----EEEEEEEcCC
Confidence 9999999999999999 5777776654
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.4e-33 Score=221.93 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=143.7
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLP-GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~-~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
-++++|||+||| +.+|+++|+++|++||.|..|.|+.+ .+|||||+|.+.++|..|++.|||..|.|+.|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 378999999999 79999999999999999999999754 379999999999999999999999999999999999975
Q ss_pred CCCCCCCC----CCC---CCCCCC--CC--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe--eEEEEEe
Q 023765 83 GRRHSSSM----DRY---SSYSSG--GS--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV--CFSQVFR 143 (277)
Q Consensus 83 ~~~~~~~~----~~~---~~~~~~--~~--------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~~~ 143 (277)
....+... ... ..+... .. ......+..+|||+|||..+++++|+++|.+||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100 000 000000 00 00112456789999999999999999999999998 8888877
Q ss_pred cCC--CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 144 DRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 144 ~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
+.. .++|||+|.+.++|.+||..|||..+.|......+.|.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 642 36999999999999999999999999997766666554
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=6.2e-33 Score=212.96 Aligned_cols=154 Identities=24% Similarity=0.364 Sum_probs=138.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
++++|||+|||+++|+++|+++|+.||+|..+.++. ++.++|||||+|.++++|..|++.||+..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 468999999999999999999999999999999964 56677999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEech
Q 023765 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~ 157 (277)
+... .....+|+|+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 81 ~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~ 140 (167)
T 1fxl_A 81 PSSA--------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 140 (167)
T ss_dssp CCCG--------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCcc--------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCH
Confidence 5432 12357899999999999999999999999999999988763 35999999999
Q ss_pred hHHHHHHHhcCCCeeccccee
Q 023765 158 DDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~ 178 (277)
++|.+|+..|||..+.|+.+.
T Consensus 141 ~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 141 IEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp HHHHHHHHHHTTCCCTTCSSC
T ss_pred HHHHHHHHHhcCCccCCCccc
Confidence 999999999999999996433
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=9.7e-33 Score=212.23 Aligned_cols=150 Identities=27% Similarity=0.387 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
++++|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.++++|..|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999954 56678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEech
Q 023765 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSY 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~ 157 (277)
+.... ....+|+|+|||..+++++|.++|.+||.|..+.+..+... +||||+|.+.
T Consensus 82 ~~~~~--------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 82 PGGES--------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp CCSST--------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCccc--------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 54321 23679999999999999999999999999999999887632 5999999999
Q ss_pred hHHHHHHHhcCCCeecc
Q 023765 158 DDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g 174 (277)
++|.+|+..|||..+.|
T Consensus 142 ~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 142 EEAQEAISALNNVIPEG 158 (168)
T ss_dssp HHHHHHHHHHTTCCCTT
T ss_pred HHHHHHHHHhcCCEecC
Confidence 99999999999999987
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=211.54 Aligned_cols=158 Identities=23% Similarity=0.367 Sum_probs=139.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~ 84 (277)
++|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|..|+..|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999965 35678999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHH
Q 023765 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDM 160 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a 160 (277)
.. ...+..+|+|+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|
T Consensus 81 ~~------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 81 QS------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CC------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CC------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 21 1234679999999999999999999999999999999877443 5999999999999
Q ss_pred HHHHHhcCCCeecccceeeEEEEeec
Q 023765 161 KYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.+|+..|||..++| ..|.|..+
T Consensus 143 ~~A~~~l~g~~~~g----~~i~v~~a 164 (166)
T 3md3_A 143 QNAMDSMQGQDLNG----RPLRINWA 164 (166)
T ss_dssp HHHHHHHTTCEETT----EECEEEES
T ss_pred HHHHHHhCCCccCC----cEEEEEec
Confidence 99999999999999 56666554
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.1e-32 Score=215.59 Aligned_cols=167 Identities=17% Similarity=0.297 Sum_probs=138.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 45678999999999999999998 5999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEec
Q 023765 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~ 156 (277)
........ ........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+
T Consensus 90 ~~~~~~~~--------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~ 155 (196)
T 1l3k_A 90 VSREDSQR--------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 155 (196)
T ss_dssp CC-------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCcccccc--------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECC
Confidence 76432211 11223468999999999999999999999999999999998754 3599999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecCCCC
Q 023765 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~r 190 (277)
.++|.+|+.. +|..++| ..|.|....++.
T Consensus 156 ~~~A~~A~~~-~~~~~~G----~~i~v~~a~~k~ 184 (196)
T 1l3k_A 156 HDSVDKIVIQ-KYHTVNG----HNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHHHHC-SCCEETT----EECEEEECC---
T ss_pred HHHHHHHHHh-CCcEECC----EEEEEEecCChh
Confidence 9999999986 7999999 567776665543
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=9.9e-32 Score=223.69 Aligned_cols=179 Identities=19% Similarity=0.280 Sum_probs=145.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (277)
..++++|||+|||+++|+++|+ ++|++||.|..|.++.++.++|||||+|.+.++|..|++.|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 999999999999998888899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCC--------------------------C------------C----------------------CCCC-
Q 023765 79 LAHGGRRHSSSMD--------------------------R------------Y----------------------SSYS- 97 (277)
Q Consensus 79 ~a~~~~~~~~~~~--------------------------~------------~----------------------~~~~- 97 (277)
++........... . . ..+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 9875442100000 0 0 0000
Q ss_pred ------CCC------------------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC
Q 023765 98 ------SGG------------------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG 147 (277)
Q Consensus 98 ------~~~------------------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 147 (277)
..+ .......+..+|||+|||..+++++|+++|.+||.|..|.+..+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000 000122356789999999999999999999999999999998665 3
Q ss_pred cEEEEEEechhHHHHHHHhcCCCeec-ccceeeEEEEeec
Q 023765 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREY 186 (277)
Q Consensus 148 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~~~~~ 186 (277)
+||||+|.+.++|.+|+..|||..+. | ..|.|...
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~~a 280 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQN----NAMKISFA 280 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCCC----CEEEEEEe
Confidence 69999999999999999999999999 7 56666654
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.5e-31 Score=211.15 Aligned_cols=178 Identities=22% Similarity=0.366 Sum_probs=143.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
..+++|||+|||+++|+++|+++|++| | .|..+.+. .++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 5 66666664 45899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----Cc
Q 023765 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GM 148 (277)
Q Consensus 73 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~ 148 (277)
+.|.|.++..............................+|||+|||..+++++|.++|.+||.|..+.+..+.. .+
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 99999998876443322111111111111223345678999999999999999999999999999999998753 35
Q ss_pred EEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
||||+|.+.++|..|+..|||..++| ..|.|....++
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 194 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQRASVG 194 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETT----EECEEEESCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 99999999999999999999999999 67777766544
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7e-32 Score=208.75 Aligned_cols=151 Identities=15% Similarity=0.309 Sum_probs=132.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---C--CCCcEEEEEEcChHHHHHHHHhcCCcccC---CceEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---P--RPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLR 76 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~---~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~ 76 (277)
++++|||+|||+++|+++|+++|++||+|..|.|+.+ + .++|||||+|.+.++|..|++.|++..+. +..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6789999999999999999999999999999999653 2 56899999999999999999999998876 67788
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEE
Q 023765 77 VELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (277)
Q Consensus 77 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~ 153 (277)
+.++...... .....+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+
T Consensus 82 ~~~~~~~~~~-------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~ 142 (175)
T 3nmr_A 82 MKPADSEKNN-------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVT 142 (175)
T ss_dssp EEECGGGCCS-------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEE
T ss_pred Eccccccccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEE
Confidence 8887654321 123679999999999999999999999999999999887553 599999
Q ss_pred EechhHHHHHHHhcCCCeecc
Q 023765 154 YTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g 174 (277)
|.+.++|.+|+..|||..+.+
T Consensus 143 f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 143 FTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp ESSHHHHHHHHHHHTTSCCCT
T ss_pred ECCHHHHHHHHHHhcCCcccC
Confidence 999999999999999988764
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2e-31 Score=213.20 Aligned_cols=172 Identities=19% Similarity=0.296 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 457999999999999999999999999999999964 56789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEech
Q 023765 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~ 157 (277)
......... ...........+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.
T Consensus 107 ~~~~~~~~~---------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~ 177 (216)
T 2qfj_A 107 NIGQAQPII---------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKA 177 (216)
T ss_dssp CCGGGHHHH---------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred Cccccchhh---------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCH
Confidence 432110000 00000113367999999999999999999999999999999998754 35999999999
Q ss_pred hHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
++|.+|+..|||..+.| ..|.|......
T Consensus 178 ~~A~~A~~~l~g~~~~g----~~i~V~~a~~~ 205 (216)
T 2qfj_A 178 QSSQDAVSSMNLFDLGG----QYLRVGKAVTP 205 (216)
T ss_dssp HHHHHHHHHHTTCBCSS----SBCEEEECSSC
T ss_pred HHHHHHHHHccCCEeCC----cEEEEEEecCC
Confidence 99999999999999999 56667666544
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=2.7e-31 Score=204.91 Aligned_cols=154 Identities=23% Similarity=0.414 Sum_probs=135.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
+++++|||+|||+++|+++|+++|++| | .|..+.+. ..+|||||+|.++++|.+|+ .||+..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 468999999999999999999999999 6 77777775 34899999999999999999 799999999
Q ss_pred ceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----c
Q 023765 73 YRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----M 148 (277)
Q Consensus 73 ~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~ 148 (277)
+.|.|.++...... ....+|+|+|||..+++++|.++|.+||.|..+.+..+..+ +
T Consensus 78 ~~i~v~~~~~~~~~--------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 78 QSLKIRRPHDYQPL--------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp EECEEECCSSCCCC--------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ceeeecCCcccCCC--------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 99999987654321 22679999999999999999999999999999999988533 5
Q ss_pred EEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 149 TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 149 ~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
||||+|.+.++|.+|+..|||..++| ..|.|..
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 170 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGMQLGD----KKLLVQR 170 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTCEETT----EECEEEE
T ss_pred EEEEEeCCHHHHHHHHHHcCCCEECC----eEEEEEe
Confidence 99999999999999999999999999 4555543
No 12
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=4e-31 Score=213.37 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=142.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.++++|||+|||+ ++|+++|+++|+.||.|..|.|+.+. +|||||+|.++++|.+|++.||+..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999998654 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCC-----CCC--------CCCCC--CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC
Q 023765 83 GRRHSSSMD-----RYS--------SYSSG--GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (277)
Q Consensus 83 ~~~~~~~~~-----~~~--------~~~~~--~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 146 (277)
......... ... .+... ........+..+|||+|||..+++++|+++|.+|| .|..+.+... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~ 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-D 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-S
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-C
Confidence 532211100 000 00000 00011234578999999999999999999999999 9999998653 3
Q ss_pred CcEEEEEEechhHHHHHHHhcCCCeec-ccceeeEEEEeecC
Q 023765 147 GMTGIVDYTSYDDMKYAIRKLDRSEFR-NAFSRSYVRVREYD 187 (277)
Q Consensus 147 ~~~~fv~f~~~~~a~~a~~~l~g~~~~-g~~~~~~i~~~~~~ 187 (277)
.+||||+|.+.++|.+|+..|||..+. | ..|.|....
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~g----~~l~v~~a~ 226 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGEN----HHLRVSFSK 226 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSS----CBCEEEECS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCCC----CeEEEEEec
Confidence 469999999999999999999999998 7 456665543
No 13
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.98 E-value=3e-31 Score=209.48 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 5 SSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
++++|||+|||+ ++|+++|+++|++||.|..|.++.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999997654 789999999999999999999999999999999999865
Q ss_pred CCCCCCCC-----CCC--------CCCCC--CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC
Q 023765 84 RRHSSSMD-----RYS--------SYSSG--GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG 147 (277)
Q Consensus 84 ~~~~~~~~-----~~~--------~~~~~--~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~ 147 (277)
........ ... .+... ........+..+|||+|||..+++++|.++|.+|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 32211100 000 00000 01112234578999999999999999999999999 99999986543 5
Q ss_pred cEEEEEEechhHHHHHHHhcCCCeec-cc
Q 023765 148 MTGIVDYTSYDDMKYAIRKLDRSEFR-NA 175 (277)
Q Consensus 148 ~~~fv~f~~~~~a~~a~~~l~g~~~~-g~ 175 (277)
++|||+|.+.++|.+|+..|||..+. |+
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 187 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGENH 187 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSSCC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCCCC
Confidence 69999999999999999999999998 74
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.7e-32 Score=208.79 Aligned_cols=158 Identities=19% Similarity=0.374 Sum_probs=137.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
+++++|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|..|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999964 568899999999999999999994 57899999999987
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEec
Q 023765 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~ 156 (277)
..... .....+|||+|||..+++++|.++|.+||.|..+.+..+.. .|||||+|.+
T Consensus 79 ~~~~~--------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~ 138 (167)
T 2cjk_A 79 IPRDE--------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDS 138 (167)
T ss_dssp CCHHH--------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESS
T ss_pred cchhh--------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECC
Confidence 64321 12256899999999999999999999999999999987643 3699999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
.++|.+|++ ++|..+.| ..|.|..+.+
T Consensus 139 ~~~a~~A~~-~~~~~~~g----~~i~V~~a~p 165 (167)
T 2cjk_A 139 ADAVDRVCQ-NKFIDFKD----RKIEIKRAEP 165 (167)
T ss_dssp HHHHHHHHH-CSEECSSS----SCEEEEECCC
T ss_pred HHHHHHHHh-CCCEEeCC----eEEEEeecCC
Confidence 999999998 89999999 5666666544
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=5.2e-32 Score=209.66 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=138.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
..++++|||+|||+++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ ||+..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 367899999999999999999999999997766333 3356789999999999999999996 9999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHH
Q 023765 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a 160 (277)
...... ......+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|
T Consensus 89 ~~~~~~------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 89 KGRDSK------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSSCS------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHH
T ss_pred CCcccc------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHH
Confidence 764321 12347899999999999999999999999999877 33344567999999999999
Q ss_pred HHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 161 KYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
.+|+..|||..+.| ..|.|....+
T Consensus 150 ~~A~~~l~g~~~~g----~~i~v~~a~~ 173 (175)
T 1fje_B 150 EKNLEEKQGAEIDG----RSVSLYYTGE 173 (175)
T ss_dssp HHHHHHHTEEEETT----EEEEEEECSS
T ss_pred HHHHHHhCCCEECC----eEEEEEecCC
Confidence 99999999999999 6777776654
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=4.2e-30 Score=211.34 Aligned_cols=156 Identities=24% Similarity=0.320 Sum_probs=135.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. .+|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 3567899999999999999999999999999999964 479999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHH
Q 023765 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDM 160 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a 160 (277)
..+|||+|||..+++++|.++|..||.|..|.+..+..+ +||||+|.+.++|
T Consensus 96 -------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 96 -------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp -------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred -------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 468999999999999999999999999999999887543 5999999999999
Q ss_pred HHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 161 KYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 161 ~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
..|+..||+..+........|.|.....
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred HHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 9999999654444212224566665543
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.3e-29 Score=211.07 Aligned_cols=165 Identities=19% Similarity=0.225 Sum_probs=144.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.|..+.++. ++.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999999998854 5677899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEec
Q 023765 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~ 156 (277)
....... ......+|||+|||..+ ++++|.++|..||.|..+.+..+..+ ++|||+|.+
T Consensus 173 ~~~~~~~-----------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~ 235 (284)
T 3smz_A 173 DAGQLTP-----------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYET 235 (284)
T ss_dssp CGGGCCT-----------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSS
T ss_pred CCCCCCc-----------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCC
Confidence 8644321 12346799999999995 99999999999999999999887543 599999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
.++|.+|+..|||..+.| ..|.|....+.
T Consensus 236 ~~~A~~A~~~l~g~~~~g----~~l~v~~a~~~ 264 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG----SHLRVSFCAPG 264 (284)
T ss_dssp HHHHHHHHHHHTTCEETT----EECEEEECCSS
T ss_pred HHHHHHHHHHhCCCccCC----eEEEEEEecCC
Confidence 999999999999999999 57777766554
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=9.8e-30 Score=212.66 Aligned_cols=166 Identities=16% Similarity=0.278 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+.+|+++|+++|+.|| .|..|.++.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 4678999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCC-----CcEEEEEEe
Q 023765 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYT 155 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~fv~f~ 155 (277)
+....... ........+|||.|||.. +++++|.++|.+||.|..|.+..+.. .+||||+|.
T Consensus 196 ~~~~~~~~-------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~ 262 (292)
T 2ghp_A 196 PLEKSKRT-------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 262 (292)
T ss_dssp CC----------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEES
T ss_pred CCcccccc-------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeC
Confidence 65432211 122345789999999999 99999999999999999999987654 469999999
Q ss_pred chhHHHHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
+.++|..|+ .|||..+.| ..|.|....+
T Consensus 263 ~~~~A~~A~-~l~g~~~~g----~~i~V~~a~~ 290 (292)
T 2ghp_A 263 NKDSAERAL-QMNRSLLGN----REISVSLADK 290 (292)
T ss_dssp SHHHHHHHG-GGTTEEETT----EEEEEEECCC
T ss_pred CHHHHHHHH-HhcCCEECC----cEEEEEEecC
Confidence 999999999 999999999 6777776654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.9e-29 Score=208.95 Aligned_cols=151 Identities=24% Similarity=0.280 Sum_probs=136.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~- 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT- 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC-
Confidence 3678999999999999999999999999 999988 45689999999999999999999999999999999998542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhH
Q 023765 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~ 159 (277)
..+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++
T Consensus 95 -------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 95 -------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp -------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred -------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 469999999999999999999999999999999877643 599999999999
Q ss_pred HHHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
|..|+..|+|..+.| ..|.+.....
T Consensus 150 a~~A~~~l~~~~~~g----~~i~v~~a~~ 174 (284)
T 3smz_A 150 AARAKSDLLGKPLGP----RTLYVHWTDA 174 (284)
T ss_dssp HHHHHHHHTTCEETT----EECEEEECCG
T ss_pred HHHHHHHhCCCEeCC----cEEEEEECCC
Confidence 999999999999999 5666666543
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.2e-29 Score=209.55 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=134.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.++++|||+|||+++|+++|+++|+.||+|..|.|+.+ ...+|||||+|.+.++|..|++ ||+..|.|+.|.|.++.
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~- 116 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLT- 116 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECC-
Confidence 56899999999999999999999999999999999663 2348999999999999999996 99999999999999864
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecC---CCcEEEEEEechh
Q 023765 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDR---GGMTGIVDYTSYD 158 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~---~~~~~fv~f~~~~ 158 (277)
..+|||+|||..+++++|.++|.+|| .|..|.++.+. ..+||||+|.+.+
T Consensus 117 --------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~ 170 (292)
T 2ghp_A 117 --------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE 170 (292)
T ss_dssp --------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH
T ss_pred --------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH
Confidence 57999999999999999999999999 99999998765 4579999999999
Q ss_pred HHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
+|..|+..|||..+.| ..|.+....+.
T Consensus 171 ~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 197 (292)
T 2ghp_A 171 DARYCVEKLNGLKIEG----YTLVTKVSNPL 197 (292)
T ss_dssp HHHHHHHHHTTCEETT----EECEEEECCCC
T ss_pred HHHHHHHHhCCCEeCC----cEEEEEECCCC
Confidence 9999999999999999 56666665443
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.2e-24 Score=154.78 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+++|||+|||+++|+++|+++|++||+|..|.|+. .+.++|||||+|.+.++|..|++.||+..|.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 367899999999999999999999999999999965 3456899999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 023765 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 125 (277)
...... .........+|||+|||+.+|++.
T Consensus 84 ~~~~~~------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAE------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------------
T ss_pred cccccc------------cccccCCCCceEeCCCCCCccccc
Confidence 322110 111122346799999999998763
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=1.5e-22 Score=176.86 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=102.2
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEe----ecCC-CCCcEE-----EEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 13 NLPGDTRMREVEDLFYKYGPIVDIDL----KIPP-RPPGYA-----FLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 13 nL~~~~t~~~l~~~F~~~G~v~~v~~----~~~~-~~~g~a-----fV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.||++ |.+||.++|+|..|.. +... ...+|+ |+.|....++..++..++.....+..........
T Consensus 4 ~lPp~-----L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~ 78 (437)
T 3pgw_S 4 FLPPN-----LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERR 78 (437)
T ss_pred cCCcc-----HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHH
Confidence 45654 7899999999988733 2111 233444 7888777666555544433322221100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechh
Q 023765 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYD 158 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~ 158 (277)
....... ...+...........+.++|||+|||+.+++++|.++|.+||.|..|.|+.+.. .+||||+|.+.+
T Consensus 79 ~~~~~~~---~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e 155 (437)
T 3pgw_S 79 QQEVETE---LKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER 155 (437)
T ss_pred HHHHHHh---hhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH
Confidence 0000000 000000001111224467999999999999999999999999999999987643 469999999999
Q ss_pred HHHHHHHhcCCCeecccceeeEEEEeecC
Q 023765 159 DMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 159 ~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
+|.+||..|||..|.| ..|.|..+.
T Consensus 156 ~A~~Ai~~lng~~i~g----r~i~V~~a~ 180 (437)
T 3pgw_S 156 DMHSAYKHADGKKIDG----RRVLVDVER 180 (437)
T ss_pred HHHHHHHHcCCCEECC----EEEEEEEeC
Confidence 9999999999999999 455555443
No 23
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.87 E-value=3.2e-21 Score=168.47 Aligned_cols=82 Identities=34% Similarity=0.583 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+.||+++|.++|++||.|+.|.|+. ++.++|||||+|.+.++|.+||+.|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86543
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.87 E-value=1.8e-22 Score=145.03 Aligned_cols=105 Identities=30% Similarity=0.437 Sum_probs=94.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..++++|||+|||+.+|+++|+++|++||.|..|.|+.++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999999999999999999999999999988888899999999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC
Q 023765 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD 135 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 135 (277)
.... .+++...++++|+++|.+||.
T Consensus 85 ~~~~----------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF----------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT----------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh----------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 4321 346667789999999999984
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=138.95 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
..++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999964 56788999999999999999999999999999999999987
Q ss_pred C
Q 023765 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-21 Score=133.88 Aligned_cols=80 Identities=18% Similarity=0.330 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcC-CcccCCceEEEEEc
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD-GYNFDGYRLRVELA 80 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~a 80 (277)
+++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.+.++|.+|++.|+ +..|.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 58999999999999999999999999 899999854 57889999999999999999998774 56799999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.+...
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86543
No 27
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6e-21 Score=135.61 Aligned_cols=83 Identities=59% Similarity=1.050 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..+.++|||+|||+++|+++|+++|++||.|..|.|+.++.+++||||+|.+.++|.+|++.||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred CCC
Q 023765 83 GRR 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 553
No 28
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=2.1e-21 Score=136.08 Aligned_cols=100 Identities=41% Similarity=0.583 Sum_probs=83.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~ 86 (277)
++|||+|||+++|+++|+++|++||+|..|.++.+ ++|||||+|.+.++|.+|+..||+..|.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999866 6899999999999999999999999999999999999875532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCC
Q 023765 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLP 118 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 118 (277)
... ...........+|||+||+
T Consensus 79 ~~~----------~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRF----------DRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCC----------CSCCCSCCCCSCCCSCCCC
T ss_pred ccC----------CCCCccccCCCceecCCCC
Confidence 211 1111122346689999986
No 29
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.85 E-value=2.4e-20 Score=141.52 Aligned_cols=138 Identities=17% Similarity=0.062 Sum_probs=101.3
Q ss_pred CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCC
Q 023765 42 PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSA 121 (277)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~ 121 (277)
..++|||||+|.+.++|++|+..+++....+..+.+........... ...............+|||+|||..+
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-------GSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-------CCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-------cccccccccCCCCCCEEEEeCCCCCC
Confidence 36789999999999999999988876443333333322111100000 00001112223457899999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCCC
Q 023765 122 SWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (277)
Q Consensus 122 ~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~r 190 (277)
++++|+++|.+||.|..|.+..+. ..|||||+|.+.++|+.|+..|||..+.| ..|.|......+
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~~ 151 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYGR 151 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS----SEEEEEEECCSS
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEECCCCC
Confidence 999999999999999999998764 34699999999999999999999999999 677777776543
No 30
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.85 E-value=5.6e-21 Score=126.87 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
-.+.-|||+||++.+|+++|+++|.+||+|..+.+.. ++|||||+|.++++|++|++.||+..+.|++|.|.+|.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4578899999999999999999999999999999975 59999999999999999999999999999999999984
No 31
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=9.3e-21 Score=142.49 Aligned_cols=138 Identities=19% Similarity=0.129 Sum_probs=109.4
Q ss_pred CCCCcEEEEEEcChHHHHHHHHhc-CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC
Q 023765 42 PRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS 120 (277)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~ 120 (277)
...+|+++|+|.+.++|.+|++.| |+..++| .|.+.++.......... .............+..+|||+|||..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~V~nl~~~ 84 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS----HHHHHHMHRDSCPLDCKVYVGNLGNN 84 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS----SSCCCCSCSSSSTTSCEEEEESCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc----ccccccccccCCCCCCEEEEeCCCCC
Confidence 366899999999999999999999 9999999 99999876432111000 00011112233455789999999999
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 121 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
+++++|+++|.+||.|..|.+..+ ..+||||+|.+.++|..|+..|||..+.| ..|.|....++
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a~~~ 148 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCG----CRVRVELSNGE 148 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSS----SCCEEEECCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEEcCCC
Confidence 999999999999999999999887 45799999999999999999999999999 46666665443
No 32
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=135.18 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred ccCC
Q 023765 80 AHGG 83 (277)
Q Consensus 80 a~~~ 83 (277)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8743
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6e-21 Score=132.78 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCceEEEEEc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~a 80 (277)
..+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|..|++.|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 467899999999999999999999999999999999854 7999999999999999999876 47899999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 875543
No 34
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=133.30 Aligned_cols=84 Identities=27% Similarity=0.491 Sum_probs=77.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
...++++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 457889999999999999999999999999999999966 567889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986554
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.5e-20 Score=129.29 Aligned_cols=83 Identities=31% Similarity=0.476 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 46789999999999999999999999999999999965 567889999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 997654
No 36
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=131.19 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec------CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (277)
+.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 56899999999999999999999999999999999964 236689999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 023765 77 VELAHGGRR 85 (277)
Q Consensus 77 v~~a~~~~~ 85 (277)
|.++.....
T Consensus 82 V~~a~~~~~ 90 (98)
T 2cpf_A 82 VRISERATK 90 (98)
T ss_dssp EECSSCSSC
T ss_pred EEEccCCCC
Confidence 999987654
No 37
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=129.64 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcc--cCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~a~ 81 (277)
.++++|||+|||+++|+++|.++|++||.|..|.|+. .+|||||+|.+.++|..|+..|++.. |.|++|.|.+++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 5889999999999999999999999999999999974 47999999999999999999999875 789999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 96 ~k~ 98 (100)
T 3r27_A 96 SQK 98 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.9e-20 Score=127.12 Aligned_cols=83 Identities=29% Similarity=0.440 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++++|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35789999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987554
No 39
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=135.26 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
.++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 568899999999999999876 7999999999999988888999999999999999999999999999999999999
Q ss_pred ccCCC
Q 023765 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+....
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 98643
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=2.8e-20 Score=129.04 Aligned_cols=80 Identities=29% Similarity=0.625 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
++++|||+|||+.+++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 578999999999999999999999999999999965 46779999999999999999999999999999999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 41
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=131.35 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC--eeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCc----ccCCce
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP--IVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGYR 74 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~--v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~ 74 (277)
..-+||||+|||+++|+++|+++|++||. |.+|.++. ++.++|||||+|.+.++|.+|++.|||. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 56689999999999999999999999995 67888854 5788999999999999999999999996 489999
Q ss_pred EEEEEccC
Q 023765 75 LRVELAHG 82 (277)
Q Consensus 75 i~v~~a~~ 82 (277)
|.|.+|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7e-20 Score=128.70 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
..+.++|||+|||+.+|+++|+++|++||+|..|.|+.+ ..++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999763 3468999999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 92 ~~~~ 95 (103)
T 2cqi_A 92 TPSS 95 (103)
T ss_dssp CTTC
T ss_pred CCcc
Confidence 7553
No 43
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=128.54 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
.+.++|||+|||+++++++|+ ++|++||+|..|.|+.+...++||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999987554489999999999999999999999999999999999
Q ss_pred ccCCC
Q 023765 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+.+..
T Consensus 87 a~~~~ 91 (96)
T 2dgx_A 87 ATGAS 91 (96)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98644
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-20 Score=130.41 Aligned_cols=82 Identities=40% Similarity=0.589 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 87554
No 45
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=127.91 Aligned_cols=83 Identities=23% Similarity=0.419 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEE-Eeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDI-DLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v-~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (277)
..++++|||+|||+++|+++|+++|++||.|..+ .|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 8854 56789999999999999999999999999999999999
Q ss_pred EccCCCC
Q 023765 79 LAHGGRR 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 82 ~a~~~~~ 88 (96)
T 1x5t_A 82 YAFKKDS 88 (96)
T ss_dssp ESCCCCC
T ss_pred EecccCC
Confidence 9987553
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=8.5e-20 Score=130.92 Aligned_cols=84 Identities=24% Similarity=0.420 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5788999999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023765 81 HGGRRHS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.......
T Consensus 93 ~~~~~~~ 99 (115)
T 2dgo_A 93 TRKPPAP 99 (115)
T ss_dssp SCCCCCS
T ss_pred cCCCCCC
Confidence 8765543
No 47
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=8.7e-20 Score=127.28 Aligned_cols=82 Identities=23% Similarity=0.492 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987554
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=129.97 Aligned_cols=83 Identities=33% Similarity=0.524 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 49
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.8e-20 Score=126.03 Aligned_cols=79 Identities=33% Similarity=0.564 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|..|++.|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45889999999999999999999999999999999954 566799999999999999999999999999999999999
Q ss_pred cc
Q 023765 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.9e-20 Score=127.91 Aligned_cols=83 Identities=25% Similarity=0.417 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7553
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.1e-20 Score=125.20 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=72.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
+.+|||+|||+++++++|+++|++||+|..+.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467789999999999999999999999999999999999986
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.3e-20 Score=129.08 Aligned_cols=82 Identities=29% Similarity=0.447 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 5678899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1x5u_A 93 SAHNK 97 (105)
T ss_dssp TTTSC
T ss_pred CCCCc
Confidence 87654
No 53
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.8e-20 Score=131.97 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCceEEEEEc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~a 80 (277)
..++++|||+|||+++|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|++.|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 357899999999999999999999999999999999854 79999999999999999998874 6899999999999
Q ss_pred cCCCCCC
Q 023765 81 HGGRRHS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.......
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8765433
No 54
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=127.11 Aligned_cols=82 Identities=24% Similarity=0.447 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+.+ ..+++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999999999999999999999763 34789999999999999999999999999999999999987
Q ss_pred CCC
Q 023765 83 GRR 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 55
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=127.40 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc--CCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+.+|+++|+++|++||.|..|.|+.. +|||||+|.+.++|..|++.| ++..|.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 57899999999999999999999999999999998754 899999999999999999976 4678999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 90 ~~~~ 93 (101)
T 2cq1_A 90 HKEL 93 (101)
T ss_dssp CSSC
T ss_pred cccC
Confidence 6554
No 56
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=129.16 Aligned_cols=83 Identities=23% Similarity=0.336 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35789999999999999999999999999999999965 46678999999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7654
No 57
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6e-20 Score=128.32 Aligned_cols=81 Identities=23% Similarity=0.466 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5688999999999999999999999999999999965 45667999999999999999999999999999999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 95 ~~~ 97 (100)
T 2do4_A 95 SGP 97 (100)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=126.94 Aligned_cols=78 Identities=27% Similarity=0.442 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5678999999999999999999999999999999965 3677899999999999999999999999999999999997
Q ss_pred c
Q 023765 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 59
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=126.42 Aligned_cols=79 Identities=27% Similarity=0.442 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||.|..|.++. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4678999999999999999999999999999999964 5677899999999999999999999999999999999998
Q ss_pred cC
Q 023765 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 75
No 60
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.9e-20 Score=125.65 Aligned_cols=81 Identities=26% Similarity=0.481 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC---C-CCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP---R-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~---~-~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+++|||+|||+++|+++|+++|++||+|..+.++.+. . ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 367899999999999999999999999999999996532 2 789999999999999999999999999999999999
Q ss_pred ccCCC
Q 023765 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 61
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=1.5e-20 Score=130.66 Aligned_cols=84 Identities=26% Similarity=0.513 Sum_probs=76.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH----HHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023765 1 MSSRSSRTLYVGNLPGDTRMREVE----DLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 1 ~~~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (277)
|+..++++|||+|||+++++++|+ ++|++||.|..|.++.++.++|||||+|.+.++|..|+..|||..|.|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999999999 9999999999999987667789999999999999999999999999999999
Q ss_pred EEEccCCC
Q 023765 77 VELAHGGR 84 (277)
Q Consensus 77 v~~a~~~~ 84 (277)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998643
No 62
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=130.50 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCc--ccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY--NFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~ 79 (277)
..++++|||+|||+ ++|+++|+++|++||.|..|.|+.+ ++||||+|.+.++|..|++.||+. .|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 35889999999999 9999999999999999999999753 689999999999999999988864 59999999999
Q ss_pred ccCCC
Q 023765 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
+....
T Consensus 89 a~~~~ 93 (102)
T 1x4d_A 89 SQKYK 93 (102)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 98644
No 63
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=129.24 Aligned_cols=82 Identities=33% Similarity=0.579 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|++.||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4568899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87553
No 64
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=129.08 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCee-EEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce---
Q 023765 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--- 74 (277)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--- 74 (277)
+..++++|||+|||+++|+++|+++|++||+|. .|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356889999999999999999999999999999 999864 4577899999999999999999999999999999
Q ss_pred -EEEEEccCCC
Q 023765 75 -LRVELAHGGR 84 (277)
Q Consensus 75 -i~v~~a~~~~ 84 (277)
|.|.++.+..
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999998654
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=129.32 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
..++++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|..|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 35789999999999999999999999999999999965 4566899999999999999999999999999999999998
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 92 ~~~~~ 96 (114)
T 2do0_A 92 ERALP 96 (114)
T ss_dssp SCCCC
T ss_pred ccCCC
Confidence 86543
No 66
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=128.06 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+++++++|+++|++||.|..|.|+.. +|||||+|.+.++|..|++.|++ ..|.|+.|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 57899999999999999999999999999999998753 79999999999999999998865 45999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7554
No 67
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=129.99 Aligned_cols=82 Identities=34% Similarity=0.555 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5689999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 93 ~~~~~ 97 (103)
T 2cq0_A 93 KPSTN 97 (103)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87553
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.6e-20 Score=128.93 Aligned_cols=82 Identities=24% Similarity=0.445 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec----CCCCCcEEEEEEcChHHHHHHHHhc-CCcccCCceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~ 78 (277)
.++++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 5789999999999999999999999999999999954 4677999999999999999999999 9999999999999
Q ss_pred EccCCCC
Q 023765 79 LAHGGRR 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987554
No 69
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.82 E-value=2.3e-19 Score=126.02 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 467999999999999999999999999999999987 679999999999999999999999999999999999876
Q ss_pred CCCC
Q 023765 84 RRHS 87 (277)
Q Consensus 84 ~~~~ 87 (277)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 5443
No 70
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=128.08 Aligned_cols=78 Identities=23% Similarity=0.314 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-----ceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-----YRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~ 78 (277)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|.+||+.||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56789999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred EccCCCC
Q 023765 79 LAHGGRR 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.+...
T Consensus 89 ~a~~~~~ 95 (108)
T 1x4c_A 89 VDGPRSP 95 (108)
T ss_dssp ESSCCSC
T ss_pred eCCCCCC
Confidence 9987543
No 71
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-19 Score=127.50 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..|++ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 35789999999999999999999999999999999965 467899999999999999999999998 89999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 93 a~~~~~ 98 (116)
T 2cqd_A 93 AYLGAK 98 (116)
T ss_dssp STTTCC
T ss_pred cccCCC
Confidence 986543
No 72
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-19 Score=123.53 Aligned_cols=78 Identities=33% Similarity=0.642 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.++ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 4678999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CCC
Q 023765 83 GRR 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 73
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.5e-20 Score=129.96 Aligned_cols=81 Identities=25% Similarity=0.502 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 4568899999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCC
Q 023765 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8643
No 74
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=123.72 Aligned_cols=78 Identities=36% Similarity=0.635 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..++++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999998 56999999999999999999999999999999999987
Q ss_pred CCC
Q 023765 83 GRR 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 75
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=128.16 Aligned_cols=82 Identities=21% Similarity=0.438 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcC------CcccCCce
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRD------GYNFDGYR 74 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~------~~~~~g~~ 74 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5688999999999999999999999999999999965 46789999999999999999999999 99999999
Q ss_pred EEEEEccCCCC
Q 023765 75 LRVELAHGGRR 85 (277)
Q Consensus 75 i~v~~a~~~~~ 85 (277)
|.|.++.+...
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999987544
No 76
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.3e-19 Score=127.78 Aligned_cols=82 Identities=26% Similarity=0.355 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC---ceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG---YRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~i~v~ 78 (277)
.++++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.| +.|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 45668999999999999999999999999998 999999
Q ss_pred EccCCCC
Q 023765 79 LAHGGRR 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987554
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=8.7e-20 Score=130.85 Aligned_cols=82 Identities=20% Similarity=0.426 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4668999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87554
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=6.7e-20 Score=126.85 Aligned_cols=79 Identities=24% Similarity=0.429 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+.+++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 5678999999999999999999999999999999965 35668999999999999999999999999999999999986
Q ss_pred C
Q 023765 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=128.14 Aligned_cols=78 Identities=15% Similarity=0.403 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|.++|++||+|..|.|+.+ +.++|||||+|.+.++|..|+. +++..|.|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 45689999999999999999999999999999999653 6789999999999999999999 99999999999999977
Q ss_pred C
Q 023765 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 5
No 80
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.6e-20 Score=126.89 Aligned_cols=79 Identities=34% Similarity=0.549 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 5678999999999999999999999999999999965 3567899999999999999999999999999999999998
Q ss_pred cC
Q 023765 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 81
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=8.5e-20 Score=129.13 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
...++|||+|||+++|+++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 999998853 35789999999999999999999999999999999999875
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 82
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=125.30 Aligned_cols=78 Identities=27% Similarity=0.503 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC--CceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~a~ 81 (277)
.++++|||+|||+++|+++|+++|++||+|..|.+... ++||||+|.+.++|.+|++.||+..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999999753 789999999999999999999999999 9999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=127.47 Aligned_cols=80 Identities=25% Similarity=0.449 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
.+.++|||+|||+++|+++|+++|++|| |..|.|+.+ +.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 5779999999999999999999999999 999999654 677999999999999999999 8999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987553
No 84
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.4e-20 Score=128.96 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+|||+|||+++|+++|+++|++|| .|..+.++. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999855 56789999999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7543
No 85
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=1.6e-19 Score=127.55 Aligned_cols=83 Identities=19% Similarity=0.339 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCccc---CCceEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLR 76 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~i~ 76 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 35789999999999999999999999999999999965 467899999999999999999999999987 899999
Q ss_pred EEEccCCCC
Q 023765 77 VELAHGGRR 85 (277)
Q Consensus 77 v~~a~~~~~ 85 (277)
|.++.....
T Consensus 90 v~~a~~~~~ 98 (106)
T 2dgp_A 90 VKPADSESR 98 (106)
T ss_dssp EEECCCCSC
T ss_pred EEECCcccc
Confidence 999987553
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=123.60 Aligned_cols=77 Identities=30% Similarity=0.568 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+++|+++|+++|++||.|..|.++ ++||||+|.+.++|..|+..||+..|.|+.|.|.++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 578999999999999999999999999999999998 569999999999999999999999999999999999876
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=8.3e-20 Score=133.34 Aligned_cols=81 Identities=35% Similarity=0.575 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5788999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred cCCC
Q 023765 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8654
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.3e-19 Score=128.90 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678899999999999999999999999999999964 5677999999999999999999999999999999999999
Q ss_pred cCCC
Q 023765 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 104 ~~~~ 107 (110)
T 1oo0_B 104 FVKG 107 (110)
T ss_dssp EESS
T ss_pred ccCC
Confidence 8644
No 89
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=2.4e-19 Score=122.44 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5678999999999999999999 899999999999999988
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 643
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=1.4e-19 Score=128.06 Aligned_cols=78 Identities=24% Similarity=0.404 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 4688999999999999999999999999999999964 56778999999999999999999999999999999999975
No 91
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.2e-20 Score=130.68 Aligned_cols=81 Identities=22% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEeecCC------CCCcEEEEEEcChHHHHHHHHhcCCcccCCce
Q 023765 4 RSSRTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (277)
...++|||+|||+++++++|. ++|++||+|..|.|+.+. .++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996532 45699999999999999999999999999999
Q ss_pred EEEEEccCCC
Q 023765 75 LRVELAHGGR 84 (277)
Q Consensus 75 i~v~~a~~~~ 84 (277)
|.|.++....
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998754
No 92
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.3e-20 Score=129.51 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCC------CCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-c
Q 023765 4 RSSRTLYVGNLPG------DTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-Y 73 (277)
Q Consensus 4 ~~~~~l~V~nL~~------~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~ 73 (277)
..+++|||+|||+ ++++++|.++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999964 47789999999999999999999999999999 9
Q ss_pred eEEEEEccC
Q 023765 74 RLRVELAHG 82 (277)
Q Consensus 74 ~i~v~~a~~ 82 (277)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999875
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=1.6e-19 Score=131.64 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 865543
No 94
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1e-19 Score=128.35 Aligned_cols=80 Identities=25% Similarity=0.283 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (277)
..++++|||+|||++ +|+++|+++|++||+|..|.|+. .+|||||+|.+.++|..|+..|+ +..|.|+.|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 467899999999998 99999999999999999999973 48999999999999999999885 4669999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 99 a~~~~~ 104 (112)
T 1x4f_A 99 SEKYKK 104 (112)
T ss_dssp ECSCSS
T ss_pred Cccccc
Confidence 986543
No 95
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=128.32 Aligned_cols=81 Identities=27% Similarity=0.479 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++++|||+|||+.+|+++|+++|++||+|..|.++. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35788999999999999999999999999999999964 467789999999999999999999999999999999999
Q ss_pred ccCC
Q 023765 80 AHGG 83 (277)
Q Consensus 80 a~~~ 83 (277)
+.+.
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=127.79 Aligned_cols=80 Identities=25% Similarity=0.468 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999653 45789999999999999999999999999999999999875
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 97
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=126.44 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-eE
Q 023765 4 RSSRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RL 75 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~------t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i 75 (277)
..+++|||+|||+.+ |+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+ .|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 357899999999999 7899999999999999999963 678899999999999999999999999999999 99
Q ss_pred EEEEccCC
Q 023765 76 RVELAHGG 83 (277)
Q Consensus 76 ~v~~a~~~ 83 (277)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 98
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=1.8e-19 Score=129.83 Aligned_cols=78 Identities=21% Similarity=0.454 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5678999999999999999999999999999999964 4678999999999999999999999999999999999987
Q ss_pred c
Q 023765 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=125.85 Aligned_cols=78 Identities=29% Similarity=0.435 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
.+.++|||+|||+++|+++|+++|++||.|.. +.+.. ++.++|||||+|.+.++|..|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88854 46778999999999999999999999999999
Q ss_pred ceEEEEEcc
Q 023765 73 YRLRVELAH 81 (277)
Q Consensus 73 ~~i~v~~a~ 81 (277)
+.|.|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 100
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=125.63 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..||+..|.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999865 899999999999999999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 100 ~~ 101 (109)
T 1x4g_A 100 PD 101 (109)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 101
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=3.6e-19 Score=125.01 Aligned_cols=81 Identities=27% Similarity=0.520 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 36788999999999999999999999997 99999965 4677899999999999999999 7999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2dng_A 90 AEGRKQ 95 (103)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987543
No 102
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=127.62 Aligned_cols=82 Identities=27% Similarity=0.468 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCee--------EEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--------DIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--------~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
.+.++|||+|||+++|+++|+++|++||.|. .|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999999 588854 46789999999999999999999999999999
Q ss_pred ceEEEEEccCCCC
Q 023765 73 YRLRVELAHGGRR 85 (277)
Q Consensus 73 ~~i~v~~a~~~~~ 85 (277)
+.|.|.++.....
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999987554
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=124.70 Aligned_cols=79 Identities=32% Similarity=0.457 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+.+|+++|+++|++||+|..|.++.+ +|||||+|.+.++|.+|++.||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 46789999999999999999999999999999999843 799999999999999999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 90 ~~ 91 (99)
T 2cpj_A 90 AS 91 (99)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=125.77 Aligned_cols=83 Identities=22% Similarity=0.331 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcc-cCCceEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYN-FDGYRLRVE 78 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~i~v~ 78 (277)
..++++|||+|||+++|+++|+++|++ ||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+.. |.|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 357899999999999999999999999 99999999965 56778999999999999999999999999 999999999
Q ss_pred EccCCCC
Q 023765 79 LAHGGRR 85 (277)
Q Consensus 79 ~a~~~~~ 85 (277)
++.....
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976543
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-19 Score=124.78 Aligned_cols=83 Identities=23% Similarity=0.316 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEee-c---CCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCceE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLK-I---PPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRL 75 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~~v~~~-~---~~~~~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~i 75 (277)
+.+.++|||+|||+++|+++|+++|++||. |..|.++ . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 467899999999999999999999999998 9999996 3 34789999999999999999999996 589999999
Q ss_pred EEEEccCCCC
Q 023765 76 RVELAHGGRR 85 (277)
Q Consensus 76 ~v~~a~~~~~ 85 (277)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987554
No 106
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=4.1e-19 Score=120.79 Aligned_cols=77 Identities=27% Similarity=0.551 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36789999999999999999999999999999999964 46778999999999999999997 688899999999987
Q ss_pred c
Q 023765 80 A 80 (277)
Q Consensus 80 a 80 (277)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 107
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=121.82 Aligned_cols=72 Identities=29% Similarity=0.494 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCC------CHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-eEEE
Q 023765 6 SRTLYVGNLPGDT------RMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRV 77 (277)
Q Consensus 6 ~~~l~V~nL~~~~------t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~i~v 77 (277)
+++|||+|||+.+ |+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 7799999999999999999863 678899999999999999999999999999999 8875
No 108
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=2.6e-19 Score=126.65 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..++++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999998 79999999999999999999999999999999999886
Q ss_pred CC
Q 023765 83 GR 84 (277)
Q Consensus 83 ~~ 84 (277)
..
T Consensus 103 ~~ 104 (108)
T 2jvo_A 103 PA 104 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 109
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=4.4e-19 Score=123.02 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
.++++|||+|||+ ++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 5789999999998 99999999999999999999995 89999999999999999999999999999999999875
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 110
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=125.64 Aligned_cols=80 Identities=15% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCCeEEE--cCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc-----CCce
Q 023765 2 SSRSSRTLYV--GNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-----DGYR 74 (277)
Q Consensus 2 ~~~~~~~l~V--~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~-----~g~~ 74 (277)
...++++||| +||++++|+++|+++|++||+|..|.|+. .+|||||+|.+.++|.+|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4568999999 77999999999999999999999998864 379999999999999999999999988 6889
Q ss_pred EEEEEccCCC
Q 023765 75 LRVELAHGGR 84 (277)
Q Consensus 75 i~v~~a~~~~ 84 (277)
|.|.++..-.
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999988543
No 111
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=127.63 Aligned_cols=81 Identities=23% Similarity=0.414 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v----~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
.++++|||+|||+++|+++|+++|++||.| ..+.+. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 778899999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987654
No 112
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=125.11 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|++||.|.-+ ...++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVP-QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECC-BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEE-ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 578999999999999999999999999988322 2246778999999999999999999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 92 ~~ 93 (101)
T 2fc9_A 92 GS 93 (101)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=6.9e-19 Score=127.88 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+.+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CCCCC
Q 023765 82 GGRRH 86 (277)
Q Consensus 82 ~~~~~ 86 (277)
.....
T Consensus 113 ~~~~~ 117 (124)
T 2kt5_A 113 SQIDL 117 (124)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 75543
No 114
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=2.4e-19 Score=124.25 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 3 SRSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 3 ~~~~~~l~V~nL~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
..++++|||+|||+ .+|+++|+++|++||+|..|.+. +|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 36789999999998 99999999999999999999996 7999999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 115
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.4e-19 Score=121.96 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+++|+++|+++|++| |.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 468899999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
+...
T Consensus 88 ~~~~ 91 (99)
T 2cpd_A 88 PVDK 91 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 116
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=1.7e-19 Score=129.12 Aligned_cols=79 Identities=54% Similarity=1.006 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccccee-eEEEEee
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR-SYVRVRE 185 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~-~~i~~~~ 185 (277)
...++|||+|||..+++++|+++|.+||+|..|.|+.+ +||||+|.+.++|++||+.|||..++|+.+. ..|.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 45789999999999999999999999999999999877 7999999999999999999999999996532 2456666
Q ss_pred cCC
Q 023765 186 YDS 188 (277)
Q Consensus 186 ~~~ 188 (277)
..+
T Consensus 91 ~~~ 93 (115)
T 3beg_B 91 DGP 93 (115)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 117
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=7.8e-19 Score=130.20 Aligned_cols=83 Identities=31% Similarity=0.587 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5678999999999999999999999999999999964 4567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876543
No 118
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=120.09 Aligned_cols=75 Identities=28% Similarity=0.464 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc-CCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR-DGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.++. .+|||||+|.+.++|..|+..| ++..|.|+.|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5678999999999999999999999999999999985 3799999999999999999988 9999999999999974
No 119
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=8.4e-19 Score=124.32 Aligned_cols=80 Identities=18% Similarity=0.356 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||+|..|.|+. ++.++|||||+|.+.++|.+|+..+ +..|.|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5788999999999999999999999999999999965 4778999999999999999999966 59999999999999
Q ss_pred cCCC
Q 023765 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
....
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 120
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=134.25 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++|||+|||+++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999954 577899999999999999999999999999999999999
Q ss_pred ccC
Q 023765 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 874
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=126.96 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
++.++|||+|||+++|+++|+++|++||.|..|.|+. .++||||+|.+.++|..|+..|||..|.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3567999999999999999999999999999999874 5789999999999999999999999999999999999864
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 122
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.1e-19 Score=133.39 Aligned_cols=82 Identities=33% Similarity=0.474 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999965 4567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87543
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=123.54 Aligned_cols=79 Identities=30% Similarity=0.487 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
..+++|||+|||+++|+++|+++|++||.|. +.++ ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3478999999999999999999999999996 5554 3467899999999999999999999999999999999999865
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=2.6e-19 Score=118.23 Aligned_cols=72 Identities=22% Similarity=0.376 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
+|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.++++|.+|++ ||+..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999964 56788999999999999999998 9999999999999875
No 125
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=126.18 Aligned_cols=82 Identities=20% Similarity=0.338 Sum_probs=75.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 36789999999999999999999999999999999965 457789999999999999999997 99999999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.+...
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 986554
No 126
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.3e-19 Score=125.46 Aligned_cols=80 Identities=35% Similarity=0.673 Sum_probs=74.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+.+++++|+++|++||.|..|.++. ++.++|||||+|.+.++|..|++.|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 568999999999999999999999999999999964 56678999999999999999999999999999999999988
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 644
No 127
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=125.49 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
...++|||+|||+++|+++|+++|++||.|..+.++ .++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456889999999999999999999999999865553 35677899999999999999999999999999999999998
Q ss_pred cCC
Q 023765 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=3.3e-19 Score=124.80 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
...++|||+|||+++++++|+++|++||.|..|.+. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 347899999999999999999999999999999997 4589999999999999999999999999999999999874
No 129
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=121.59 Aligned_cols=79 Identities=25% Similarity=0.379 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC-eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCceEEEEEc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~a 80 (277)
..+.++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 7766664 379999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.+...
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 86543
No 130
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.5e-20 Score=123.38 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++++|||+|||+++++++|+++|++||+|..+.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999965 467899999999999999999999999999999988766
Q ss_pred cc
Q 023765 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.4e-19 Score=131.20 Aligned_cols=83 Identities=37% Similarity=0.556 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999964 5678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 125 ~~~~~~ 130 (135)
T 2lea_A 125 RYGRPP 130 (135)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876543
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=126.41 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 4678999999999999999999 899999999999999987
Q ss_pred CC
Q 023765 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 133
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.3e-18 Score=131.85 Aligned_cols=83 Identities=37% Similarity=0.556 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023765 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
.+....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 976543
No 134
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.78 E-value=8.1e-19 Score=124.72 Aligned_cols=76 Identities=28% Similarity=0.576 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 5 SSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~V~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+++|||+|||++ +|+++|+++|++||+|..|.| +++||||+|.+.++|..|+..||+..|.|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3489999999999 999999999999999999999 3899999999999999999999999999999999999864
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 101 ~~ 102 (110)
T 1wf1_A 101 KP 102 (110)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=2.9e-19 Score=124.78 Aligned_cols=78 Identities=27% Similarity=0.491 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec----CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
...++|||+|||+++++++|+++|++|| |..|.|+. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4679999999999999999999999999 99999964 5678999999999999999999 7999999999999999
Q ss_pred ccCC
Q 023765 80 AHGG 83 (277)
Q Consensus 80 a~~~ 83 (277)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8754
No 136
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.5e-18 Score=119.26 Aligned_cols=82 Identities=55% Similarity=0.987 Sum_probs=71.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccc-eeeEEE
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF-SRSYVR 182 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~-~~~~i~ 182 (277)
++....++|||+|||..+++++|+++|.+||.|..|.|+.+ +||||+|.+.++|++||+.|||..+.|+. ....|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 34456889999999999999999999999999999999887 79999999999999999999999999832 235777
Q ss_pred EeecCC
Q 023765 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
|..+.+
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 877765
No 137
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=129.49 Aligned_cols=82 Identities=20% Similarity=0.380 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--EEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCc----ccCCc
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY----NFDGY 73 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~ 73 (277)
..++++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.+. +|.+|+..||+. .|.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 457899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred eEEEEEccCCCC
Q 023765 74 RLRVELAHGGRR 85 (277)
Q Consensus 74 ~i~v~~a~~~~~ 85 (277)
.|.|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987543
No 138
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=124.16 Aligned_cols=79 Identities=24% Similarity=0.348 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 467899999999999999999999999999887 567778999999999999999999999999999999999998764
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 92 ~ 92 (96)
T 1fjc_A 92 G 92 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.5e-19 Score=125.12 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||.|..+.++. ++.++|||||+|.++++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999998766643 5677899999999999999999999999999999999987
Q ss_pred cC
Q 023765 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 140
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=119.34 Aligned_cols=78 Identities=17% Similarity=0.290 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|+.| .|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567899999999999999999999999 999999965 46678999999999999999999 99999999999999988
Q ss_pred CC
Q 023765 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 141
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=5.6e-19 Score=120.33 Aligned_cols=77 Identities=31% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
+...++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 5678999999999999999999999999 99999885 5689999999999999999999999999999999999875
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=4e-19 Score=117.95 Aligned_cols=73 Identities=16% Similarity=0.373 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
++|||+|||+++++++|+++|++||+|..+.++. ++.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999999 9999999999986
No 143
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=4.1e-19 Score=132.37 Aligned_cols=83 Identities=24% Similarity=0.410 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (277)
..++++|||+|||+++|+++|+++|++||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999998876 555667888999999999999999999999999999999
Q ss_pred EEEEEccCCCC
Q 023765 75 LRVELAHGGRR 85 (277)
Q Consensus 75 i~v~~a~~~~~ 85 (277)
|.|.++.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 144
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.4e-18 Score=126.26 Aligned_cols=80 Identities=26% Similarity=0.477 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|..|+ .|||..|.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 357999999999999999999999999999999954 6788999999999999999999 699999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=123.73 Aligned_cols=82 Identities=21% Similarity=0.314 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|||+++|+++|+++|+.|+.|..+....++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 57899999999999999999999999875555444456778899999999999999999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 93 ~~ 94 (102)
T 2fc8_A 93 GE 94 (102)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.9e-19 Score=123.25 Aligned_cols=78 Identities=29% Similarity=0.583 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
++|||+|||+++++++|+++|++||+|..|.++. ++.++|||||+|.+.+ |..|+..|||..|.|+.|.|.+|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999965 4678999999999999 99999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 147
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=128.73 Aligned_cols=77 Identities=34% Similarity=0.572 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999875
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=121.90 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~-v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|++||.|.. |.|+. ++.++|||||+|.++++|.+|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46789999999999999999999999999987 77754 567899999999999999999996 999999999999998
Q ss_pred cCC
Q 023765 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 149
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=120.58 Aligned_cols=81 Identities=19% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..+.++|||+|||+++|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 35789999999999999999999999999999999965 46778999999999999999999 47799999999999
Q ss_pred ccCCCC
Q 023765 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 90 a~~~~~ 95 (103)
T 2cqg_A 90 PNSKQS 95 (103)
T ss_dssp CCTTCC
T ss_pred cCCCCc
Confidence 987554
No 150
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=8e-19 Score=133.93 Aligned_cols=82 Identities=23% Similarity=0.409 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|++||+|..|.|+. ++.++|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 86543
No 151
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=124.01 Aligned_cols=80 Identities=19% Similarity=0.382 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 358999999999999999999999999999999965 467899999999999999999996 9999999999999998
Q ss_pred CCCC
Q 023765 82 GGRR 85 (277)
Q Consensus 82 ~~~~ 85 (277)
....
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=118.38 Aligned_cols=78 Identities=19% Similarity=0.414 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
+..++|||+|||+++|+++|+++|++||+|..|.+ .....+ ||||+|.+.++|.+|+. ||+..|.|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~-~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM-DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE-CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE-cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 56789999999999999999999999999999833 222223 99999999999999999 9999999999999988754
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=114.66 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=67.8
Q ss_pred CCCCe-EEEcCCCCCCCHHH----HHHHhhcc-CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 4 RSSRT-LYVGNLPGDTRMRE----VEDLFYKY-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 4 ~~~~~-l~V~nL~~~~t~~~----l~~~F~~~-G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
.++.| |||+|||..+++++ |+++|++| |+|.+| + .|+|||+|.++++|.+|++.|||..|.|++|.|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 46777 99999999999998 55899999 599998 3 299999999999999999999999999999999
Q ss_pred EEccCCCC
Q 023765 78 ELAHGGRR 85 (277)
Q Consensus 78 ~~a~~~~~ 85 (277)
.+|+....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99997654
No 154
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.1e-19 Score=125.50 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe-eEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI-VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v-~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 567899999999999999999999999999 7788854 567899999999999999999996 999999999999998
Q ss_pred cCC
Q 023765 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 155
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.1e-18 Score=124.90 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce-----EEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-----LRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~ 78 (277)
...++|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45689999999999999999999999999999999754 99999999999999999999999999998 7777
Q ss_pred EccCC
Q 023765 79 LAHGG 83 (277)
Q Consensus 79 ~a~~~ 83 (277)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76653
No 156
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=124.15 Aligned_cols=79 Identities=19% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCccc--------CCc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--------DGY 73 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~--------~g~ 73 (277)
.+.++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4678999999999999999999999999999999965 466789999999999999999999999999 578
Q ss_pred eEEEEEccC
Q 023765 74 RLRVELAHG 82 (277)
Q Consensus 74 ~i~v~~a~~ 82 (277)
+|.|.|+.+
T Consensus 103 ~l~v~~a~p 111 (114)
T 1x5o_A 103 PLLCKFSGP 111 (114)
T ss_dssp CBEEEECCC
T ss_pred ceeEEccCC
Confidence 899999884
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=117.29 Aligned_cols=77 Identities=26% Similarity=0.468 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|| ++|+++|+++|++||+|..|.|. ..+|||||+|.+.++|.+|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 46789999996 99999999999999999999995 46899999999999999999999999999999999999875
Q ss_pred CC
Q 023765 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 88 ~~ 89 (97)
T 1x5p_A 88 PM 89 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 158
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=121.34 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||.| .|.|+. ++.++|||||+|.++++|.+|++ +|+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999955 888854 56778999999999999999996 89999999999999987
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 91 ~~~ 93 (102)
T 1wez_A 91 TAG 93 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 159
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=1.7e-18 Score=130.07 Aligned_cols=78 Identities=45% Similarity=0.735 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.+.++|||+|||+++|+++|+++|++||.|..|.++.+ ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46789999999999999999999999999999999765 5899999999999999999999999999999999998864
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1e-18 Score=125.71 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (277)
.+.++|||+|||+++|+++|+++|+.||. |..|.|+. .+.++|||||+|.+.++|.+|++ ||+..|.|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88998864 46778999999999999999999 99999999999999
Q ss_pred EccC
Q 023765 79 LAHG 82 (277)
Q Consensus 79 ~a~~ 82 (277)
++..
T Consensus 94 ~a~~ 97 (118)
T 2db1_A 94 KSHR 97 (118)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=118.29 Aligned_cols=79 Identities=15% Similarity=0.372 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-eecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~-~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..+++|||+|||+++|+++|+++|++||.|..|. |+.+. ..+.|||+|.+.++|..|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65433 245599999999999999999999999999999999987
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.76 E-value=9.7e-19 Score=115.43 Aligned_cols=72 Identities=19% Similarity=0.461 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
+|||+|||+++|+++|+++|++||+|..+.++. ++.++|||||+|.+.++|.+|+. +++..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999964 46789999999999999999999 5899999999999875
No 163
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-19 Score=124.53 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||.|..+.+ ..++.++|||||+|.+.++|.+|++ ||+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 46789999999999999999999999998887222 2356789999999999999999999 99999999999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 164
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.2e-18 Score=131.75 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+.+++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999965 46788999999999999999999999999999999999998
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 166 ~~~ 168 (177)
T 2f3j_A 166 SQI 168 (177)
T ss_dssp SGG
T ss_pred CCC
Confidence 644
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=2.1e-18 Score=138.29 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=71.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G--~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++|||+||++++|+++|+++|++|| .|..|.|+. ++.++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999964 567899999999999999999999999999999999999
Q ss_pred ccC
Q 023765 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 874
No 166
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=125.42 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEe--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~-v~~--~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.|.. +.+ ..++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45689999999999999999999999999876 333 3467789999999999999999999 9999999999999998
Q ss_pred cC
Q 023765 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 167
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.6e-18 Score=127.18 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (277)
.+.++|||+|||+++|+++|+++|++||. |..|.|+. .+.++|||||+|.+.++|.+|++ ||+..|.|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 88888864 36778999999999999999999 99999999999999
Q ss_pred EccC
Q 023765 79 LAHG 82 (277)
Q Consensus 79 ~a~~ 82 (277)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9764
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.75 E-value=6.6e-18 Score=126.38 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEEEccCCC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGGR 84 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~a~~~~ 84 (277)
.+|||+||++.+|+++|+++|++||+|..|.|.. +..++||||+|.+.++|..|++.|||..|.| +.|.|.|++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3357899999999999999999999999965 999999999764
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=6.3e-18 Score=121.91 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=68.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcE-EEEEEcChHHHHHHHHhcCCcccCC--ceEEEEEccCC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~a~~~ 83 (277)
..|||+||++.+|+++|+++|++||+|..|.+... .+|| |||+|.+.++|..|++.|||..|.| +.|.|+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 34679999999999999999999999999988642 3688 9999999999999999999999988 89999999875
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 4
No 170
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=118.88 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
..+|||+|||+++|+++|+++|++| .|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|.|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 4689999999999999999999999 899999965 46789999999999999999995 999999999999988764
No 171
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=120.26 Aligned_cols=77 Identities=21% Similarity=0.218 Sum_probs=68.4
Q ss_pred CCCe--EEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcE-EEEEEcChHHHHHHHHhcCCcccCC--ceEEEEE
Q 023765 5 SSRT--LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (277)
Q Consensus 5 ~~~~--l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 79 (277)
++++ |||+||++.+|+++|+++|++||+|..|.|... .|| |||+|.+.++|..|++.|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 3455 579999999999999999999999999999642 386 9999999999999999999999987 6899999
Q ss_pred ccCCC
Q 023765 80 AHGGR 84 (277)
Q Consensus 80 a~~~~ 84 (277)
|++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98654
No 172
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=6.9e-18 Score=114.62 Aligned_cols=74 Identities=31% Similarity=0.587 Sum_probs=68.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhcc----C-------CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023765 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKY----G-------PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 2 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~----G-------~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (277)
..++.++|||+|||+++|+++|+++|++| | +|..+.+..+ +|||||+|.+.++|.+|+ .||+..|
T Consensus 2 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 2 PLGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp CSGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 35678999999999999999999999999 8 9999998744 899999999999999999 8999999
Q ss_pred CCceEEEEE
Q 023765 71 DGYRLRVEL 79 (277)
Q Consensus 71 ~g~~i~v~~ 79 (277)
.|+.|.|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 173
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=1.4e-17 Score=127.01 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=70.8
Q ss_pred EEEcChHHHHHHHHhcCCcccC--CceEEEEEccCCCCCCCCCCCCC-CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHH
Q 023765 50 LEFEDYRDAEDAIRGRDGYNFD--GYRLRVELAHGGRRHSSSMDRYS-SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126 (277)
Q Consensus 50 V~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l 126 (277)
.+|.+.++|..|+..|++.... |+.+.+.++.......-. .... ........+....+.++|||+|||..+++++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L 89 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYE-RVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEI 89 (165)
T ss_dssp --------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCcc-ccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 7899999999999999987665 666665553321100000 0000 00001112233455789999999999999999
Q ss_pred HHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 127 KDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 127 ~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
.++|.+||.|..|.|+.+..+ +||||+|.+.++|..||..|||..|.| ..|.|......
T Consensus 90 ~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a~~~ 152 (165)
T 1rk8_A 90 QEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTIQVDWCFVK 152 (165)
T ss_dssp HHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEEESEEC
T ss_pred HHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC----EEEEEEEecCC
Confidence 999999999999999987543 599999999999999999999999999 56666665443
No 174
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-18 Score=121.54 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCC---eeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGP---IVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~---v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
..+.++|||+|||+++|+++|+++|+.||. |..|.|+. .+.++|||||+|.+.++|.+|+. ||+..|.|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357789999999999999999999999998 89999865 36789999999999999999999 9999999999999
Q ss_pred EEccC
Q 023765 78 ELAHG 82 (277)
Q Consensus 78 ~~a~~ 82 (277)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99874
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.73 E-value=2.6e-18 Score=126.35 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.++++|.+|+ .+|+..|.|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4567999999999999999999999999 67888865 4678999999999999999999 699999999999999987
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.73 E-value=1.7e-17 Score=113.00 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcc--cCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN--FDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~a~ 81 (277)
.+.++|||+|||+++|+++|+++|++||+|.+|.|+.+ ++|||||+|.+.++|.+ |++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999763 78999999999999984 34444 569999999988
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
+..
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-18 Score=122.98 Aligned_cols=78 Identities=22% Similarity=0.216 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCe----eEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPI----VDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v----~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
.+..+|||+|||+++|+++|+++|++||+| ..|.|+. ++.++|||||+|.+.++|.+|++. |+..|.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999975 5777754 677889999999999999999995 999999999999
Q ss_pred EEccC
Q 023765 78 ELAHG 82 (277)
Q Consensus 78 ~~a~~ 82 (277)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88763
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8e-18 Score=114.59 Aligned_cols=79 Identities=24% Similarity=0.442 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~ 82 (277)
+.++++|||+|||+++|+++|+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|..|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999999754 68999999999999986543 23556899999999886
Q ss_pred CCC
Q 023765 83 GRR 85 (277)
Q Consensus 83 ~~~ 85 (277)
...
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.72 E-value=1.3e-17 Score=120.32 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCee--EEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIV--DIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~--~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
.+.++|||+|||+++|+++|+++|++| .|. .|.|+. .+.++|||||+|.++++|.+|++ +++..|.|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 576 888864 46789999999999999999999 578999999999988
Q ss_pred ccC
Q 023765 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-19 Score=127.40 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~--------v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
.++++|||+|||+++++++|+++|++||.|.. |.|+. ++.++|||||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 57899999999999999999999999999998 77754 46789999999999999999999999999999
Q ss_pred ceEEEEEccCCCC
Q 023765 73 YRLRVELAHGGRR 85 (277)
Q Consensus 73 ~~i~v~~a~~~~~ 85 (277)
+.|.|.++.....
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999986543
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=2.8e-17 Score=118.42 Aligned_cols=76 Identities=26% Similarity=0.482 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 46789999996 79999999999999999999996 56899999999999999999999999999999999999865
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 112 ~ 112 (121)
T 2bz2_A 112 P 112 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 182
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-17 Score=115.66 Aligned_cols=76 Identities=32% Similarity=0.496 Sum_probs=63.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---C---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---P---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~---~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (277)
..++++|||+|||+++|+++|+++|++||+|. +.++. + +.++|||||+|.+.++|.+|++.|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 46789999999999999999999999999999 66644 2 5789999999999999999999883 35666666
Q ss_pred EEEcc
Q 023765 77 VELAH 81 (277)
Q Consensus 77 v~~a~ 81 (277)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 65433
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=8.2e-18 Score=117.84 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
.++++|||+|||+++|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 3568999999999999999999999999999999965 55678999999999999999999 9999999999999988
Q ss_pred CCC
Q 023765 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 644
No 184
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1.7e-17 Score=122.04 Aligned_cols=119 Identities=15% Similarity=0.065 Sum_probs=71.5
Q ss_pred cEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 023765 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (277)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 125 (277)
-++|++|.++..+..|+..+++....|..- +.+ ...++......+|||+|||..+++++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~--------------------~~~~~~~~~~~~l~V~nLp~~~te~~ 63 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY--------------------GRPPPDVEGMTSLKVDNLTYRTSPDT 63 (135)
T ss_dssp -------------------------------CCS--------------------CCSCSSGGGCCCEEEECCCSSCHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc--------------------CCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 467888888888889998888765554431 000 11123344578999999999999999
Q ss_pred HHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 126 LKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 126 l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..+.| ..|.|......
T Consensus 64 L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g----~~l~V~~a~~~ 127 (135)
T 2lea_A 64 LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG----RELRVQMARYG 127 (135)
T ss_dssp HHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS----SCCEEEECCCC
T ss_pred HHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEECCCC
Confidence 999999999999999987643 4599999999999999999999999999 46666666544
No 185
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=110.80 Aligned_cols=75 Identities=21% Similarity=0.358 Sum_probs=68.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
+++|||+|||..+++++|+++|.+||.|..|.+..+..+ |||||+|.+.++|++|++.|||..+.| ..|.|.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g----r~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS----KTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC----EEEEEE
Confidence 578999999999999999999999999999999987654 499999999999999999999999999 567776
Q ss_pred ecC
Q 023765 185 EYD 187 (277)
Q Consensus 185 ~~~ 187 (277)
.++
T Consensus 95 ~Ak 97 (99)
T 4fxv_A 95 YAR 97 (99)
T ss_dssp ECC
T ss_pred Eee
Confidence 654
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=7.3e-17 Score=113.02 Aligned_cols=80 Identities=20% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCC-----CCCHHHHHHHhhccCCeeEEEeecC----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023765 3 SRSSRTLYVGNLPG-----DTRMREVEDLFYKYGPIVDIDLKIP----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 3 ~~~~~~l~V~nL~~-----~~t~~~l~~~F~~~G~v~~v~~~~~----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (277)
..++++|+|.||.. +.++++|+++|++||+|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999963 2378999999999999999999653 46799999999999999999999999999999
Q ss_pred eEEEEEccC
Q 023765 74 RLRVELAHG 82 (277)
Q Consensus 74 ~i~v~~a~~ 82 (277)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999874
No 187
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=5.9e-17 Score=114.46 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=70.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
...++|||+|||+.+++++|+++|.+|| +|..+.+......|||||+|.+.++|++|++.|||..+.| ..|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G----r~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG----SVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT----EEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 3478999999999999999999999999 9999999766677899999999999999999999999999 6777877
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 6543
No 188
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.7e-17 Score=115.77 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=67.9
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcC----hHH----HHHHHH--hcCCcc
Q 023765 7 RTLYVGNL----PGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFED----YRD----AEDAIR--GRDGYN 69 (277)
Q Consensus 7 ~~l~V~nL----~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 69 (277)
+.|||+|| |+.+++++|+++|+.||+|..+.+.. |+.++|||||+|.+ +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999954 67889999999996 433 788888 789999
Q ss_pred cCCceEEEEEccCC
Q 023765 70 FDGYRLRVELAHGG 83 (277)
Q Consensus 70 ~~g~~i~v~~a~~~ 83 (277)
|.|+.|.|.+-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999996643
No 189
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=4.8e-17 Score=129.31 Aligned_cols=79 Identities=22% Similarity=0.361 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
..++|||+|||+.+|+++|+++|+.||.|..|.|+. .+.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++...
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 467899999999999999999999999999999965 3456899999999999999999999999999999999998753
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=1e-16 Score=127.48 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3568999999999999999999999999999999965 4577899999999999999999999999999999999999
Q ss_pred cCCCC
Q 023765 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 87643
No 191
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1e-16 Score=122.03 Aligned_cols=78 Identities=22% Similarity=0.424 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.++++|||+|||+.+|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 4678999999999999999999999999999999964 5677899999999999999999999999999999999998
Q ss_pred c
Q 023765 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=111.71 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 4 RSSRTLYVGNLPGDTR-----------MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t-----------~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
.++++|+|.||....+ +++|+++|++||+|..|.| .+..++|||||+|.+.++|.+|+..|||..|.|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 5789999999944432 5899999999999999977 445689999999999999999999999999999
Q ss_pred ceEEEEEccCCC
Q 023765 73 YRLRVELAHGGR 84 (277)
Q Consensus 73 ~~i~v~~a~~~~ 84 (277)
+.|.|.++.+..
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999988644
No 193
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.67 E-value=8.2e-16 Score=110.03 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=69.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
....+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|++|+..|||..+.| ..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g----~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG----KAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS----SBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----EEEEE
Confidence 346799999999999999999999999999999999876 23699999999999999999999999999 46666
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 81 ~~a~~~ 86 (116)
T 2fy1_A 81 EQAKKP 86 (116)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 666544
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=8.5e-17 Score=128.34 Aligned_cols=78 Identities=24% Similarity=0.347 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc----
Q 023765 4 RSSRTLYVGNLPGDT---------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---- 70 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~---------t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~---- 70 (277)
.++++|||+||+..+ ++++|+++|++||+|..|.|+. .+|||||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 7999999999999999999974 489999999999999999999999999
Q ss_pred --------CCceEEEEEccCCC
Q 023765 71 --------DGYRLRVELAHGGR 84 (277)
Q Consensus 71 --------~g~~i~v~~a~~~~ 84 (277)
.|+.|.|.||....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=1.2e-16 Score=123.07 Aligned_cols=77 Identities=23% Similarity=0.341 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
+.++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.++
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 56899999999999999999999999999888 667788999999999999999999999999999999999998753
No 196
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.67 E-value=4.9e-16 Score=111.07 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
...+|||+|||..+++++|+++|.+||.|..|.|+.+..+ +||||+|.+.++|+.||..|||..+.| ..|.|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g----~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND----RKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC----EEEEEEE
Confidence 3568999999999999999999999999999999987653 599999999999999999999999999 5677776
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
...+
T Consensus 80 a~~~ 83 (115)
T 4f25_A 80 FKSR 83 (115)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 6543
No 197
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=1.5e-16 Score=122.02 Aligned_cols=77 Identities=29% Similarity=0.533 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+.+|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 468999999999999999999999999999999954 55678999999999999999999999999999999999873
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.67 E-value=2.3e-16 Score=123.76 Aligned_cols=81 Identities=30% Similarity=0.524 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a 80 (277)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 5667899999999999999999999999999999999999
Q ss_pred cCCC
Q 023765 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
.+..
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.5e-16 Score=121.32 Aligned_cols=78 Identities=19% Similarity=0.492 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
++++|||+|||+++|+++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..|.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467899999999999999999999999999999964 56789999999999999999999 99999999999999987
Q ss_pred CC
Q 023765 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
+.
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 200
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=6.3e-16 Score=102.58 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=66.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
...|+|+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+.| ..|.|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g----r~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLAN----TTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETT----EEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECC----cEEEEEEC
Confidence 67899999999999999999999999999999866 56799999999999999999999999999 67777654
No 201
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.66 E-value=3.5e-16 Score=113.79 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..|.|+.+.. .+||||+|.+.++|++|++.|||..+.|+ .|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----PI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS----BC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe----EE
Confidence 34578999999999999999999999999999999987753 35999999999999999999999999994 55
Q ss_pred EEeecCCC
Q 023765 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|..+...
T Consensus 95 ~v~~a~~~ 102 (126)
T 3ex7_B 95 SVDWCFVR 102 (126)
T ss_dssp EEEESEES
T ss_pred EEEEecCC
Confidence 56555433
No 202
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-15 Score=106.85 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=72.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.||+..+.| ..|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG----YRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 3445678999999999999999999999999999999976543 5699999999999999999999999999 6777
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|......+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 87776543
No 203
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=108.07 Aligned_cols=77 Identities=17% Similarity=0.089 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
+..+|||+||+..+++++|+++|.+||.|..|.|+.+..+ |||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g----r~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG----NIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC----eEEEE
Confidence 4679999999999999999999999999999999988663 599999999999999999999999999 56677
Q ss_pred eecCC
Q 023765 184 REYDS 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
..+..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 66643
No 204
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-15 Score=104.12 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=72.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
......+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..||+..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG----KEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC----CeEE
Confidence 3455789999999999999999999999999999999886543 699999999999999999999999999 6788
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 88776543
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=3.7e-16 Score=109.47 Aligned_cols=81 Identities=23% Similarity=0.397 Sum_probs=70.7
Q ss_pred CCCCCCeEEEcCC--CCCCC--------HHHHHHHhhccCCeeEEEeecC-----CCCCcEEEEEEcChHHHHHHHHhcC
Q 023765 2 SSRSSRTLYVGNL--PGDTR--------MREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 2 ~~~~~~~l~V~nL--~~~~t--------~~~l~~~F~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~ 66 (277)
++.|+++|.|.|+ |..+. +++|+++|++||+|..|.|+.+ +.++|+|||+|.++++|.+|++.||
T Consensus 1 ~g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 1 GGHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 4679999999999 43443 4689999999999999999653 2568999999999999999999999
Q ss_pred CcccCCceEEEEEccC
Q 023765 67 GYNFDGYRLRVELAHG 82 (277)
Q Consensus 67 ~~~~~g~~i~v~~a~~ 82 (277)
|..|.|+.|.|.++..
T Consensus 81 G~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 81 GRKFANRVVVTKYCDP 96 (105)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEeCCCEEEEEEeCH
Confidence 9999999999999763
No 206
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=4.4e-16 Score=121.46 Aligned_cols=78 Identities=15% Similarity=0.371 Sum_probs=69.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++|||+|||+++|+++|.++|++||+|..|.|+. ++.++|||||+|.+.++|..|+..+ +..|.|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 47899999999999999999999999999999965 4667899999999999999999855 45999999999998764
Q ss_pred C
Q 023765 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 207
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.5e-16 Score=107.32 Aligned_cols=77 Identities=6% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC--CeecccceeeEEEEe
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRVR 184 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~~~ 184 (277)
.+..+|||+|||+.+++++|+++|.+||.|..|.++.+ .+||||+|.+.++|..|++.|++ ..+.| ..|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G----r~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETT----EECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEEE
Confidence 44789999999999999999999999999999999876 47999999999999999998864 78888 567776
Q ss_pred ecCCC
Q 023765 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
....+
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 66543
No 208
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=106.38 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=71.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
+...+..+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..+.| .
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG----R 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT----B
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC----c
Confidence 3445678999999999999999999999999999999987654 3699999999999999999999999999 5
Q ss_pred EEEEeecCCC
Q 023765 180 YVRVREYDSR 189 (277)
Q Consensus 180 ~i~~~~~~~~ 189 (277)
.|.|......
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2dnm_A 84 ELRVQVARYG 93 (103)
T ss_dssp CCEEEECSSC
T ss_pred EEEEEECCcC
Confidence 6677766544
No 209
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=3.2e-16 Score=120.37 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC---CceEEEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRVEL 79 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~ 79 (277)
+.++|||+|||+.+|+++|+++|++||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 568999999999999999999999999999999965 4567899999999999999999999998776 48999999
Q ss_pred cc
Q 023765 80 AH 81 (277)
Q Consensus 80 a~ 81 (277)
|.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 210
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=4.9e-16 Score=121.69 Aligned_cols=81 Identities=22% Similarity=0.425 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+.++|||+|||+++|+++|+++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 467789999999999999999985 8999999999999998
Q ss_pred CCCCC
Q 023765 82 GGRRH 86 (277)
Q Consensus 82 ~~~~~ 86 (277)
+....
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 76543
No 211
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=5e-16 Score=118.52 Aligned_cols=77 Identities=32% Similarity=0.526 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVE 78 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~i~v~ 78 (277)
.+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45668999999999999999999999999988 999998
Q ss_pred Ec
Q 023765 79 LA 80 (277)
Q Consensus 79 ~a 80 (277)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 212
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-15 Score=103.63 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.......+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|++|+..|||..+.| ..|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC----EEE
Confidence 3345578999999999999999999999999999999987754 4699999999999999999999999999 677
Q ss_pred EEeecCCCC
Q 023765 182 RVREYDSRR 190 (277)
Q Consensus 182 ~~~~~~~~r 190 (277)
.|.....+.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 777776543
No 213
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-15 Score=104.22 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=71.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|..|+..|||..+.| ..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG----RMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS----CEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 347899999999999999999999999999999998775 33699999999999999999999999999 6777
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 82 V~~a~~~~ 89 (99)
T 1whw_A 82 VLPSTIKK 89 (99)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCc
Confidence 87776654
No 214
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-15 Score=105.85 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=71.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec--CCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
......+|||+|||..+++++|+++|.+||.|..|.+..+ ...+||||+|.+.++|.+|+..|||..+.| ..|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT----KPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS----SBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 3446789999999999999999999999999999999987 223599999999999999999999999999 5666
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 77665543
No 215
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.4e-15 Score=104.59 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..|||..+.| ..|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l 87 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH----LIL 87 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC----cEE
Confidence 455789999999999999999999999999999999987543 599999999999999999999999999 677
Q ss_pred EEeecCCCC
Q 023765 182 RVREYDSRR 190 (277)
Q Consensus 182 ~~~~~~~~r 190 (277)
.|.......
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 777776553
No 216
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=7e-15 Score=105.10 Aligned_cols=81 Identities=21% Similarity=0.259 Sum_probs=71.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|++.||+..+.| ..|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 97 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM----KRL 97 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 345689999999999999999999999999999999987643 499999999999999999999999999 677
Q ss_pred EEeecCCCC
Q 023765 182 RVREYDSRR 190 (277)
Q Consensus 182 ~~~~~~~~r 190 (277)
.|.....+.
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 787776543
No 217
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.8e-15 Score=101.62 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=68.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHG----VNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCC----cEEEEEE
Confidence 3457899999999999999999999999999999998 3599999999999999999999999999 5677777
Q ss_pred cCCCC
Q 023765 186 YDSRR 190 (277)
Q Consensus 186 ~~~~r 190 (277)
.....
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 65543
No 218
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=106.06 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=67.2
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCC--eecccceeeEEEE
Q 023765 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~~ 183 (277)
.+..+|||+|||+ .+++++|+++|.+||.|..|.++.++ +||||+|++.++|..|++.||+. .+.| ..|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFG----KPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECC----cEEEE
Confidence 3578999999999 99999999999999999999998764 59999999999999999999864 4888 67777
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 776543
No 219
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=103.73 Aligned_cols=80 Identities=20% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
......+|||+|||..+++++|+++|.+||.|. +.+..+...+||||+|.+.++|+.|+..|||..+.| ..|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT----DTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS----SCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 345578999999999999999999999999997 777777778899999999999999999999999999 456666
Q ss_pred ecCCC
Q 023765 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
...++
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 65443
No 220
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.63 E-value=1.5e-14 Score=103.33 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=72.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
......+|||+|||..+++++|+++|.+||.|..|.++.+..+ +||||+|.+.++|++|+..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT----EE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 3455789999999999999999999999999999999987543 599999999999999999999999999 67
Q ss_pred EEEeecCCCC
Q 023765 181 VRVREYDSRR 190 (277)
Q Consensus 181 i~~~~~~~~r 190 (277)
|.|.......
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 7777776543
No 221
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-15 Score=103.45 Aligned_cols=80 Identities=15% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|++|++ ||+..+.| ..|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG----KKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS----CBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC----eEE
Confidence 34578999999999999999999999999999999987653 4699999999999999998 99999999 566
Q ss_pred EEeecCCCC
Q 023765 182 RVREYDSRR 190 (277)
Q Consensus 182 ~~~~~~~~r 190 (277)
.|....++.
T Consensus 82 ~V~~a~~~~ 90 (99)
T 2dgs_A 82 EVKRAEPRD 90 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 777665543
No 222
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-15 Score=101.25 Aligned_cols=77 Identities=23% Similarity=0.348 Sum_probs=69.7
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
.....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|++|+..|||..+.| ..|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQG----KRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCC----cEEEEEE
Confidence 345789999999999999999999999999999999866 99999999999999999999999999 6788887
Q ss_pred cCCCC
Q 023765 186 YDSRR 190 (277)
Q Consensus 186 ~~~~r 190 (277)
...+.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 76543
No 223
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.3e-15 Score=101.58 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=70.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|++|+..|||..+.| .
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----R 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 34456789999999999999999999999999999999987553 599999999999999999999999999 5
Q ss_pred EEEEeecC
Q 023765 180 YVRVREYD 187 (277)
Q Consensus 180 ~i~~~~~~ 187 (277)
.|.|...+
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 67776553
No 224
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-15 Score=102.52 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=70.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..|||..+.| ..|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG----RPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 468999999999999999999999999999999988754 3699999999999999999999999999 56677
Q ss_pred eecCCCC
Q 023765 184 REYDSRR 190 (277)
Q Consensus 184 ~~~~~~r 190 (277)
.....+.
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 7665543
No 225
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=9.9e-16 Score=116.67 Aligned_cols=76 Identities=32% Similarity=0.588 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce--EEEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR--LRVEL 79 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--i~v~~ 79 (277)
+.++|||+|||+.+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568899999999999999999999999999999954 4567899999999999999999999999999965 88887
Q ss_pred c
Q 023765 80 A 80 (277)
Q Consensus 80 a 80 (277)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 226
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.63 E-value=2.5e-15 Score=102.01 Aligned_cols=76 Identities=11% Similarity=0.186 Sum_probs=68.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|++|+..|||..+.| ..|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG----QEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC----eEEEE
Confidence 5799999999999999999999999999999998775 45699999999999999999999999999 56666
Q ss_pred eecCC
Q 023765 184 REYDS 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
....+
T Consensus 80 ~~a~~ 84 (88)
T 4a8x_A 80 TAVLA 84 (88)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 66543
No 227
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=104.80 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=71.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|||..+.| ..|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 4578999999999999999999999999999999987643 4699999999999999999999999999 6788
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 88776554
No 228
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-15 Score=104.24 Aligned_cols=81 Identities=17% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-----CcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.+..+..+|||+|||..+++++|+++|.+|| |..|.++.+.. .+||||+|.+.++|++|| .||+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g---- 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN---- 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT----
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC----
Confidence 3445678999999999999999999999999 99999987754 359999999999999999 999999999
Q ss_pred eEEEEeecCCCC
Q 023765 179 SYVRVREYDSRR 190 (277)
Q Consensus 179 ~~i~~~~~~~~r 190 (277)
..|.|.....+.
T Consensus 84 ~~l~V~~a~~~~ 95 (104)
T 1wi8_A 84 KRIRVDVADQAQ 95 (104)
T ss_dssp EECEEEECCCCC
T ss_pred cEEEEEEccCCC
Confidence 677777776554
No 229
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.63 E-value=8.6e-15 Score=102.48 Aligned_cols=77 Identities=9% Similarity=0.160 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.+..+ ||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD----YAFIHFDERDGAVKAMEEMNGKDLEG----ENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESSHHHHHHHHHHHTTEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----EEEEEeCCHHHHHHHHHHHCCCccCC----CEEEEEE
Confidence 345789999999999999999999999999999998855 99999999999999999999999999 6777877
Q ss_pred cCCCC
Q 023765 186 YDSRR 190 (277)
Q Consensus 186 ~~~~r 190 (277)
.....
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 76543
No 230
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-15 Score=104.84 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=69.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|++.||+..+.|+ .|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~----~l 84 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR----QI 84 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC----CC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe----EE
Confidence 34578999999999999999999999999999999987653 35999999999999999999999999994 55
Q ss_pred EEeecCCC
Q 023765 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|......
T Consensus 85 ~v~~a~~~ 92 (102)
T 1x5s_A 85 RVDQAGKS 92 (102)
T ss_dssp EEEEEECC
T ss_pred EEEECCCC
Confidence 56555443
No 231
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.63 E-value=3.6e-15 Score=102.50 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCe--ecccceeeEEEEe
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE--FRNAFSRSYVRVR 184 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~--~~g~~~~~~i~~~ 184 (277)
.+..+|||+|||..+++++|.++|.+||.|..+.++.. .+||||+|++.++|.+|++.|++.. +.| ..|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~G----r~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAG----HPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETT----EEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCC----cEEEEE
Confidence 45789999999999999999999999999999988754 4699999999999999999999876 668 677777
Q ss_pred ecCC
Q 023765 185 EYDS 188 (277)
Q Consensus 185 ~~~~ 188 (277)
....
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 6643
No 232
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-15 Score=103.32 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-------CcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
+..+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..+.| ..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG----HK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT----EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC----eE
Confidence 367999999999999999999999999999999987654 3599999999999999999999999999 67
Q ss_pred EEEeecCCCC
Q 023765 181 VRVREYDSRR 190 (277)
Q Consensus 181 i~~~~~~~~r 190 (277)
|.|.......
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 7777776543
No 233
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.4e-15 Score=126.00 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~ 81 (277)
++++|||+|||..+|+++|+++|+.||.|..|.|.... +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 67899999999999999999999999999999998543 589999999999999999999999999 9999999985
No 234
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-15 Score=101.22 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
....+|||+|||..+++++|+++|.+||.|..+.+..+ ||||+|.+.++|+.|+..|||..+.| ..|.|...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKG----KRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETT----EECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECC----cEEEEEEC
Confidence 44789999999999999999999999999999999865 99999999999999999999999999 67777777
Q ss_pred CCC
Q 023765 187 DSR 189 (277)
Q Consensus 187 ~~~ 189 (277)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 235
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-14 Score=101.25 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=71.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.....+|||+|||..+++++|.++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..|||..+.| ..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE----NIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS----CEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC----EEEE
Confidence 345789999999999999999999999999999999987632 599999999999999999999999999 6777
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|....++.
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 77776543
No 236
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=5.2e-15 Score=102.83 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVC-FSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.+..+|||+|||..+++++|+++|.+||.|. .+.++.+..+ +||||+|.+.++|++|+..|||..+.|+.....|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3478999999999999999999999999999 9999988643 5999999999999999999999999997655557
Q ss_pred EEeecCCC
Q 023765 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|......
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 77776544
No 237
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5e-15 Score=102.27 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=70.6
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEecCC-CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
....+|||+|||..+++++|+ ++|.+||.|..|.++.+.. .+||||+|.+.++|++|++.|||..+.| ..|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g----r~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS----KKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT----EEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC----eEE
Confidence 346799999999999999999 9999999999999986644 4699999999999999999999999999 678
Q ss_pred EEeecCCC
Q 023765 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|..+.+.
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 88877554
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-14 Score=102.03 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=70.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.+..+..+|||+|||..+++++|+++|.+|| |..|.++.+..+ +||||+|.+.++|++|+ .|||..+.| .
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD----R 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT----E
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC----e
Confidence 3445678999999999999999999999997 999999988653 59999999999999999 899999999 6
Q ss_pred EEEEeecCCCC
Q 023765 180 YVRVREYDSRR 190 (277)
Q Consensus 180 ~i~~~~~~~~r 190 (277)
.|.|.......
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 77777776543
No 239
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=100.62 Aligned_cols=77 Identities=17% Similarity=0.205 Sum_probs=67.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG----RQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEEE
Confidence 34679999999999999999999999999999999987533 599999999999999999999999999 5666
Q ss_pred EeecC
Q 023765 183 VREYD 187 (277)
Q Consensus 183 ~~~~~ 187 (277)
|....
T Consensus 80 v~~a~ 84 (87)
T 3bs9_A 80 TNWAT 84 (87)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 66554
No 240
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.7e-15 Score=102.23 Aligned_cols=77 Identities=21% Similarity=0.234 Sum_probs=68.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec--ccceeeEEEEe
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR--NAFSRSYVRVR 184 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~--g~~~~~~i~~~ 184 (277)
.+..+|||+|||..+++++|+++|.+||.|..|.+..+ .+||||+|.+.++|++|++.|||..+. | ..|.|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g----~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPD----RRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSS----CBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCC----cEEEEE
Confidence 45689999999999999999999999999999998876 569999999999999999999999999 7 566676
Q ss_pred ecCCC
Q 023765 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
...++
T Consensus 89 ~a~~~ 93 (97)
T 1why_A 89 FAKSG 93 (97)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 66544
No 241
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=4.5e-15 Score=100.11 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----RTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC----cEEE
Confidence 3478999999999999999999999999999999987643 3599999999999999999999999999 4555
Q ss_pred Eee
Q 023765 183 VRE 185 (277)
Q Consensus 183 ~~~ 185 (277)
|..
T Consensus 81 v~~ 83 (85)
T 3mdf_A 81 VNL 83 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 242
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=9.5e-15 Score=103.71 Aligned_cols=82 Identities=10% Similarity=0.155 Sum_probs=71.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcC------CCeecc
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD------RSEFRN 174 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~------g~~~~g 174 (277)
...+..+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|.+|+..|| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 345578999999999999999999999999999999987744 4699999999999999999999 999999
Q ss_pred cceeeEEEEeecCCCC
Q 023765 175 AFSRSYVRVREYDSRR 190 (277)
Q Consensus 175 ~~~~~~i~~~~~~~~r 190 (277)
..|.|.....+.
T Consensus 91 ----~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 ----RQLKVDLAVTRD 102 (111)
T ss_dssp ----CEEEEECCCCCC
T ss_pred ----EEEEEEECCCCc
Confidence 677777776543
No 243
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.5e-14 Score=102.06 Aligned_cols=79 Identities=22% Similarity=0.320 Sum_probs=70.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..||+..+.| ..|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD----RPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC----CEEE
Confidence 345789999999999999999999999999999999987653 599999999999999999999999999 5667
Q ss_pred EeecCC
Q 023765 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
|.....
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 766544
No 244
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.3e-15 Score=102.68 Aligned_cols=81 Identities=28% Similarity=0.354 Sum_probs=71.1
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..||+..+.| ..
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG----KP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS----CB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345578999999999999999999999999999999988753 3599999999999999999999999999 56
Q ss_pred EEEeecCCC
Q 023765 181 VRVREYDSR 189 (277)
Q Consensus 181 i~~~~~~~~ 189 (277)
|.|......
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 677766554
No 245
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-15 Score=101.27 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
....+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~ 86 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG----R 86 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT----E
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC----c
Confidence 3445678999999999999999999999999999999987654 3699999999999999999999999999 5
Q ss_pred EEEEeec
Q 023765 180 YVRVREY 186 (277)
Q Consensus 180 ~i~~~~~ 186 (277)
.|.|..+
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 6666543
No 246
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=6.2e-15 Score=103.79 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=70.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCee---ccccee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEF---RNAFSR 178 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~---~g~~~~ 178 (277)
.....+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|.+|++.||+..+ .|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g---- 85 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN---- 85 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC----
Confidence 44578999999999999999999999999999999988654 46999999999999999999999987 66
Q ss_pred eEEEEeecCCCC
Q 023765 179 SYVRVREYDSRR 190 (277)
Q Consensus 179 ~~i~~~~~~~~r 190 (277)
..|.|.......
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 566676665543
No 247
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=9e-15 Score=103.10 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=71.3
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEechhHHHHHHHhc-CCCeecccce
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFS 177 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~ 177 (277)
.......+|||+|||..+++++|+++|.+||.|..|.++.+. ..+||||+|.+.++|++|+..| |+..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g--- 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG--- 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS---
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC---
Confidence 344567899999999999999999999999999999998772 2369999999999999999999 9999999
Q ss_pred eeEEEEeecCCCC
Q 023765 178 RSYVRVREYDSRR 190 (277)
Q Consensus 178 ~~~i~~~~~~~~r 190 (277)
..|.|.......
T Consensus 87 -~~l~v~~a~~~~ 98 (107)
T 2cph_A 87 -RRLVLEWADSEV 98 (107)
T ss_dssp -CBCEEEECCCCC
T ss_pred -CEEEEEeCCCCC
Confidence 566676665543
No 248
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-14 Score=101.00 Aligned_cols=78 Identities=8% Similarity=0.086 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc--CCCeecccceeeEEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL--DRSEFRNAFSRSYVRV 183 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l--~g~~~~g~~~~~~i~~ 183 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.++.+ .+||||+|.+.++|..|++.| ++..+.| ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G----r~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRN----QPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETT----EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----cEEEE
Confidence 345789999999999999999999999999999988865 579999999999999999977 4677888 67777
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
.....+
T Consensus 86 ~~a~~~ 91 (101)
T 2cq1_A 86 QYSNHK 91 (101)
T ss_dssp EECSCS
T ss_pred EEcCcc
Confidence 776543
No 249
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.6e-15 Score=102.47 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
+.++|||+|||..+++++|.++|.+||.|..+ .++.+.. .+||||+|.+.++|++|+..|||..+.| ..|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN----RPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT----EECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 46899999999999999999999999999999 8887643 3599999999999999999999999999 6777
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 77765543
No 250
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.3e-15 Score=103.39 Aligned_cols=78 Identities=14% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
...++|||+|||..+++++|+++|.+||.|..|.+..+ .+||||+|.+.++|+.|+..|||..+.| ..|.|...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEG----HVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETT----EECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECC----cEEEEEec
Confidence 45789999999999999999999999999999999877 5699999999999999999999999999 67777776
Q ss_pred CCCC
Q 023765 187 DSRR 190 (277)
Q Consensus 187 ~~~r 190 (277)
....
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 251
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.61 E-value=1.6e-15 Score=119.12 Aligned_cols=78 Identities=18% Similarity=0.266 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CceEEEEEcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAH 81 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~ 81 (277)
.++++|||+|||+.+|+++|+++|+.|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3588999999999999999999999999 9999999653 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 023765 82 GG 83 (277)
Q Consensus 82 ~~ 83 (277)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 252
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=6.1e-15 Score=101.88 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=69.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..+|||+|||..+++++|.++|.+||.|..+.+..+.. .+||||+|.+.++|++|++.|||..+.| ..|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS----RFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEE
Confidence 57999999999999999999999999999999987754 4699999999999999999999999999 677777
Q ss_pred ecCCC
Q 023765 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
.....
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 66544
No 253
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=1.4e-14 Score=101.82 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=69.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
....+|||+|||..+++++|.++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..|||..+.|. ....|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCccEEE
Confidence 45789999999999999999999999999999999987643 5999999999999999999999998871 1134566
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 666544
No 254
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2e-14 Score=99.79 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=67.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
..+..+|||+|||..+++++|+++|.+| |.|..+.+.. +||||+|.+.++|++|+..|||..+.| ..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLDG----SPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeCC----cEEEE
Confidence 3457899999999999999999999999 8999888764 399999999999999999999999998 67888
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 877654
No 255
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=9e-15 Score=98.14 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=67.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
.+|||+|||..+++++|.++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG----RPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT----EECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC----cEEEEEe
Confidence 58999999999999999999999999999999887543 599999999999999999999999999 5667766
Q ss_pred cCC
Q 023765 186 YDS 188 (277)
Q Consensus 186 ~~~ 188 (277)
..+
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 544
No 256
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.5e-15 Score=103.26 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=66.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCC--eecccceeeEEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS--EFRNAFSRSYVRV 183 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~--~~~g~~~~~~i~~ 183 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.++.+ .+||||+|.+.++|.+|++.|++. .+.| ..|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G----r~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAG----QQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSS----SBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEEE
Confidence 345789999999999999999999999999999988764 569999999999999999988764 4788 56667
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
.....+
T Consensus 86 ~~a~~~ 91 (104)
T 1wex_A 86 NYSTSK 91 (104)
T ss_dssp EECSSS
T ss_pred EEccCc
Confidence 666543
No 257
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=3.4e-15 Score=119.93 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CceEEEEEccC
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~a~~ 82 (277)
++++|||+|||+.+|+++|+++|++|| .|..|.+... .+|||||+|.+.++|.+|+..|||..|. |+.|.|.|+.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 478999999999999999999999999 9999999543 3799999999999999999999999999 99999999875
Q ss_pred C
Q 023765 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 3
No 258
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=3.5e-15 Score=104.09 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=67.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
++|||+|||..+++++|+++|.+||.|..+.+..+ ..+||||+|.+.++|++|++.|||..+.| ..|.|......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICG----SRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSS----CCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECC----cEEEEEEccCC
Confidence 47999999999999999999999999999999888 66799999999999999999999999999 45677766554
No 259
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=4.8e-15 Score=104.59 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
......+|||+|||..+++++|+++|.+||.|..+.+. .+||||+|.+.++|++|+..|||..+.| ..|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFAN----QPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETT----EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34557899999999999999999999999999999998 5699999999999999999999999998 677777
Q ss_pred ecCCC
Q 023765 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
.....
T Consensus 99 ~a~~~ 103 (108)
T 2jvo_A 99 YSKLP 103 (108)
T ss_dssp SCSCC
T ss_pred EecCC
Confidence 76554
No 260
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=1.3e-15 Score=119.98 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCe--eEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCc----eEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPI--VDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY----RLRV 77 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v--~~v~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~----~i~v 77 (277)
++++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|..|+..|||..|.|. ++.|
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~v 201 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTL 201 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEEC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEE
Confidence 56789999999999999999999999999 88888654 34569999999999999999999999999887 5777
Q ss_pred EEc
Q 023765 78 ELA 80 (277)
Q Consensus 78 ~~a 80 (277)
++|
T Consensus 202 k~~ 204 (205)
T 3tyt_A 202 KLC 204 (205)
T ss_dssp EEE
T ss_pred Eec
Confidence 765
No 261
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.4e-15 Score=105.71 Aligned_cols=78 Identities=6% Similarity=0.075 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC--CeecccceeeEEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVRV 183 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~~ 183 (277)
..+..+|||+|||+.+++++|+++|.+||.|..|.++.+ .+||||+|++.++|.+|++.|++ ..+.| ..|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G----r~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRG----QPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTT----BCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECC----eEEEE
Confidence 345789999999999999999999999999999999876 46999999999999999998874 67888 56677
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
.....+
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 766543
No 262
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=1.1e-14 Score=103.23 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 107 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
....+|||+|||.. +++++|+++|.+||.|..|.+ ..+||||+|.+.++|++|+..|||..+.| ..|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAG----QTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETT----EECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEEE
Confidence 34689999999999 999999999999999999998 34599999999999999999999999999 5677776
Q ss_pred cCC
Q 023765 186 YDS 188 (277)
Q Consensus 186 ~~~ 188 (277)
...
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 263
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=9e-15 Score=101.61 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=66.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCC----cEEEEEEechhHHHHHHHhcCCC
Q 023765 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRS 170 (277)
Q Consensus 103 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~ 170 (277)
..+..+.++|||+|||..+++++|+++|.+||.|.. +.+..+..+ |||||+|.+.++|+.|++.|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344556889999999999999999999999999999 999887543 59999999999999999999999
Q ss_pred eecccce
Q 023765 171 EFRNAFS 177 (277)
Q Consensus 171 ~~~g~~~ 177 (277)
.+.|+.+
T Consensus 87 ~~~g~~l 93 (99)
T 2la6_A 87 EFSGNPI 93 (99)
T ss_dssp BSSSSBC
T ss_pred EeCCcEE
Confidence 9999533
No 264
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.59 E-value=9.8e-15 Score=99.99 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=68.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+..|||..+.|+ .|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~----~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR----EIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB----CCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc----EEEE
Confidence 34578999999999999999999999999999999987532 36999999999999999999999999994 5555
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 555443
No 265
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=98.00 Aligned_cols=75 Identities=15% Similarity=0.240 Sum_probs=65.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc-CCCeecccceeeEEEE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVRV 183 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~~ 183 (277)
......+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|..|+..| +|..+.| ..|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g----~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNG----RRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETT----EECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECC----CEEEE
Confidence 3455789999999999999999999999999999999875 469999999999999999999 9999999 44554
Q ss_pred ee
Q 023765 184 RE 185 (277)
Q Consensus 184 ~~ 185 (277)
..
T Consensus 82 ~~ 83 (85)
T 2ytc_A 82 KW 83 (85)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 266
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=102.90 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=65.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcC-CCeecccceeeEEEE
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLD-RSEFRNAFSRSYVRV 183 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~-g~~~~g~~~~~~i~~ 183 (277)
++|||+|||+.+++++|+++|.+|| .|..|.++.++. .|||||+|.+.++|++|++.++ +..+.| ..|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g----r~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG----QKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT----EEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC----EEEEE
Confidence 5899999999999999999999999 899999887643 4699999999999999999874 567888 67888
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
....++
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 776544
No 267
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=1.3e-14 Score=99.97 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=69.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
......+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|.+|+..|||..+.| ..|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l 87 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG----RPI 87 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC----CEE
Confidence 3455789999999999999999999999999999999987653 599999999999999999999999999 566
Q ss_pred EEeec
Q 023765 182 RVREY 186 (277)
Q Consensus 182 ~~~~~ 186 (277)
.|...
T Consensus 88 ~V~~a 92 (95)
T 2ywk_A 88 NVSGP 92 (95)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 66544
No 268
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=4.7e-14 Score=104.29 Aligned_cols=82 Identities=20% Similarity=0.198 Sum_probs=72.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
+......+|||+|||..+++++|.++|..||.|..|.+..+..+ +||||+|.+.++|.+|++.|||..+.| .
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN----K 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS----C
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----e
Confidence 34456789999999999999999999999999999999987653 599999999999999999999999999 6
Q ss_pred EEEEeecCCC
Q 023765 180 YVRVREYDSR 189 (277)
Q Consensus 180 ~i~~~~~~~~ 189 (277)
.|.|..+...
T Consensus 113 ~l~v~~a~~~ 122 (139)
T 1u6f_A 113 RLKVALAASG 122 (139)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEECCCC
Confidence 7778777654
No 269
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.9e-15 Score=102.59 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=66.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+..+|||+|||..+++++|+++|.+||.|..+........+||||+|.+.++|++|+..||+..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG----RAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC----eEEEEEE
Confidence 345789999999999999999999999998832222222344699999999999999999999999999 6788887
Q ss_pred cCCCC
Q 023765 186 YDSRR 190 (277)
Q Consensus 186 ~~~~r 190 (277)
...+.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 76553
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.8e-15 Score=104.12 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=71.2
Q ss_pred CCCceEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCC-------CcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023765 107 RSDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG-------GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~-------~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
...++|||+|||+.+++++|. ++|.+||.|..|.+..+.. .+||||+|.+.++|++|++.|||..++|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g-- 90 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG-- 90 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT--
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC--
Confidence 447899999999999999999 9999999999999987754 2699999999999999999999999999
Q ss_pred eeeEEEEeecCCCC
Q 023765 177 SRSYVRVREYDSRR 190 (277)
Q Consensus 177 ~~~~i~~~~~~~~r 190 (277)
..|.|.....+.
T Consensus 91 --r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 --RTLKASLGTTKY 102 (111)
T ss_dssp --EEEEEESCCCCS
T ss_pred --EEEEEEeccccc
Confidence 678888776553
No 271
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=1.5e-14 Score=101.92 Aligned_cols=79 Identities=19% Similarity=0.245 Sum_probs=68.5
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 103 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
++...+..+|||+|||..+++++|+++|.+||.|..|.+..+..+ +||||+|.+.++|++|+..|||..+.| .
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG----R 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----E
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC----c
Confidence 344556889999999999999999999999999999999987633 499999999999999999999999999 4
Q ss_pred EEEEee
Q 023765 180 YVRVRE 185 (277)
Q Consensus 180 ~i~~~~ 185 (277)
.|.|..
T Consensus 99 ~l~V~~ 104 (107)
T 3ulh_A 99 PMNIQL 104 (107)
T ss_dssp ECEEEE
T ss_pred EEEEEE
Confidence 555544
No 272
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=103.14 Aligned_cols=81 Identities=22% Similarity=0.354 Sum_probs=70.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeec
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--------FSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (277)
....++|||+|||..+++++|+++|.+||.|. .|.++.+.. .+||||+|.+.++|++|+..|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44578999999999999999999999999998 688887743 359999999999999999999999999
Q ss_pred ccceeeEEEEeecCCCC
Q 023765 174 NAFSRSYVRVREYDSRR 190 (277)
Q Consensus 174 g~~~~~~i~~~~~~~~r 190 (277)
| ..|.|.......
T Consensus 92 g----~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 G----SKLKVSLARKKP 104 (113)
T ss_dssp T----EECEEECSSCCC
T ss_pred C----CEEEEEECCCCC
Confidence 9 677787776543
No 273
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.59 E-value=7.3e-15 Score=107.01 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=70.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
...+..+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..+.| ..
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g----~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG----RR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----EE
Confidence 345678999999999999999999999999999999987643 4699999999999999999999999999 56
Q ss_pred EEEeecCCC
Q 023765 181 VRVREYDSR 189 (277)
Q Consensus 181 i~~~~~~~~ 189 (277)
|.|......
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 677666544
No 274
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=102.32 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
...++|||+|||..+++++|.++|.+||.|..|.+..+..+ +||||+|.+.++|+.|+..|||..+.|+ .|.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 96 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ----PIS 96 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS----BCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc----EEE
Confidence 45789999999999999999999999999999999987653 5999999999999999999999999994 455
Q ss_pred EeecC
Q 023765 183 VREYD 187 (277)
Q Consensus 183 ~~~~~ 187 (277)
|....
T Consensus 97 V~~a~ 101 (106)
T 1p27_B 97 VDWCF 101 (106)
T ss_dssp EEESE
T ss_pred EEeec
Confidence 55443
No 275
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=4.3e-15 Score=124.75 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=67.9
Q ss_pred CCCCCCeEEEcC--CCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC---Cc--e
Q 023765 2 SSRSSRTLYVGN--LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD---GY--R 74 (277)
Q Consensus 2 ~~~~~~~l~V~n--L~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~--~ 74 (277)
++.++++|||+| |+..+|+++|+++|++||+|..|.|.. ++|||||+|.+.++|.+|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 467999999999 578999999999999999999998864 5899999999999999999999998883 44 5
Q ss_pred EEEEEcc
Q 023765 75 LRVELAH 81 (277)
Q Consensus 75 i~v~~a~ 81 (277)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 276
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=100.60 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=69.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
.....+|||+|||..+++++|+++|.+||.|..+ .++.+..++.|||+|.+.++|..|+..|||..+.| ..|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN----FTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS----CBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 3457899999999999999999999999999999 58888777789999999999999999999999999 455666
Q ss_pred ecCC
Q 023765 185 EYDS 188 (277)
Q Consensus 185 ~~~~ 188 (277)
...+
T Consensus 88 ~a~~ 91 (96)
T 2e44_A 88 YIPD 91 (96)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 5543
No 277
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=4.4e-15 Score=101.96 Aligned_cols=78 Identities=9% Similarity=0.082 Sum_probs=66.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCe----eccc
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSE----FRNA 175 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~----~~g~ 175 (277)
.....+|||+|||+.+|+++|.++|.+||. +..|.++.++. .|||||+|.+.++|++|++.|||.. ++|
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G- 84 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG- 84 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-
Confidence 344789999999999999999999999995 66788887654 3699999999999999999999974 788
Q ss_pred ceeeEEEEeecC
Q 023765 176 FSRSYVRVREYD 187 (277)
Q Consensus 176 ~~~~~i~~~~~~ 187 (277)
..|.|..++
T Consensus 85 ---r~i~V~~Ak 93 (95)
T 2lkz_A 85 ---KTIGVDFAK 93 (95)
T ss_dssp ---EEEEEEECC
T ss_pred ---EEEEEEEcc
Confidence 677776653
No 278
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=1.2e-14 Score=108.78 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=69.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.....|||+||++.+++++|.++|.+||+|..|.+......+||||+|.+.++|++|++.|||..|.|. ...|+|...
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~--g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS--CSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC--CcEEEEEEe
Confidence 335679999999999999999999999999999998776677999999999999999999999999652 146777776
Q ss_pred CCC
Q 023765 187 DSR 189 (277)
Q Consensus 187 ~~~ 189 (277)
+.+
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 544
No 279
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=1.2e-14 Score=102.92 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=70.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG----QTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----cEE
Confidence 34578999999999999999999999999999999987753 3699999999999999999999999999 566
Q ss_pred EEeecCCC
Q 023765 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|.....+
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 67665443
No 280
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1.6e-14 Score=100.40 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+..+|||+|||..+++++|+++|.+||.|..|.+..+ .+||||+|.+.++|++|++.|||..+.| ..|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g----~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRG----KQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTT----BCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCC----ceEEEEE
Confidence 345789999999999999999999999999999998865 4699999999999999999999999999 5666766
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
....
T Consensus 86 a~~~ 89 (99)
T 2cpj_A 86 ACHS 89 (99)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6544
No 281
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2e-14 Score=102.71 Aligned_cols=80 Identities=8% Similarity=0.086 Sum_probs=69.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|.++|.+||.| ..+.+......+||||+|.+.++|+.|+..|||..+.| ..|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG----KILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS----CBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC----cEEE
Confidence 457899999999999999999999999998 66777766667899999999999999999999999998 5667
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.......
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 77766543
No 282
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=1e-14 Score=101.08 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|+..|||..+.| ..|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT----EEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC----eEE
Confidence 445789999999999999999999999999987766655433 599999999999999999999999999 566
Q ss_pred EEeecCC
Q 023765 182 RVREYDS 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
.|.....
T Consensus 88 ~V~~a~~ 94 (98)
T 2cqp_A 88 KLVLGSG 94 (98)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 6666543
No 283
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=100.58 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=71.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.......+|||+|||..+++++|+++|.+||.|..|.++.+..+ +||||+|.+.++|++||.. ++..+.| .
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g----~ 85 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG----R 85 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT----E
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC----E
Confidence 34456789999999999999999999999999999999987543 5999999999999999998 9999999 6
Q ss_pred EEEEeecCCCC
Q 023765 180 YVRVREYDSRR 190 (277)
Q Consensus 180 ~i~~~~~~~~r 190 (277)
.|.|....++.
T Consensus 86 ~l~V~~a~~~~ 96 (105)
T 2dh8_A 86 NIDPKPCTPRG 96 (105)
T ss_dssp EEBCCCSCCSS
T ss_pred EEEEEEccCCC
Confidence 77777665543
No 284
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=7.6e-15 Score=100.77 Aligned_cols=77 Identities=16% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC-CeecccceeeEEEEe
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR-SEFRNAFSRSYVRVR 184 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g-~~~~g~~~~~~i~~~ 184 (277)
.+..+|||+|||..+++++|+++|.+||. |..+.+. ..+||||+|.+.++|++|+..||| ..+.| ..|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g----~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHG----KIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETT----EECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECC----EEEEEE
Confidence 34679999999999999999999999999 6656554 246999999999999999999999 99999 677777
Q ss_pred ecCCCC
Q 023765 185 EYDSRR 190 (277)
Q Consensus 185 ~~~~~r 190 (277)
....+.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 776543
No 285
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=2.2e-14 Score=101.20 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=69.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
...+..+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|+..|||..+.| ..
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g----~~ 97 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG----RP 97 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS----SC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----EE
Confidence 3455789999999999999999999999999999999987543 599999999999999999999999999 45
Q ss_pred EEEeecCC
Q 023765 181 VRVREYDS 188 (277)
Q Consensus 181 i~~~~~~~ 188 (277)
|.|....+
T Consensus 98 l~V~~a~~ 105 (108)
T 2jrs_A 98 MKVGHVTE 105 (108)
T ss_dssp CEEECSCS
T ss_pred EEEEEccc
Confidence 66665543
No 286
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=103.00 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=70.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG--GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
......+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|++|+..|||..+.| ..|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG----RKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC----EEEE
Confidence 344578999999999999999999999999999999987643 4699999999999999999999999999 5666
Q ss_pred EeecCC
Q 023765 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
|.....
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 666543
No 287
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.57 E-value=3.3e-14 Score=107.21 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=70.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+..+|||+|||..+++++|+++|.+||.|..|.|+.+..+ +||||+|.+.++|++||..||+..|.| ..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD----RIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC----eEEE
Confidence 45789999999999999999999999999999999988653 599999999999999999999999999 6777
Q ss_pred EeecCCC
Q 023765 183 VREYDSR 189 (277)
Q Consensus 183 ~~~~~~~ 189 (277)
|..+...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 7777654
No 288
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.9e-14 Score=98.56 Aligned_cols=76 Identities=24% Similarity=0.360 Sum_probs=65.2
Q ss_pred CCCeEEEcCCC-------CCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 5 SSRTLYVGNLP-------GDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 5 ~~~~l~V~nL~-------~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
..+.|.|.-.. ..+|+++|+++|++||+|..|.|+ +.++|||||+|.+.++|..|++.+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45677777654 458999999999999999999997 46799999999999999999997654 67999999
Q ss_pred EEccCCC
Q 023765 78 ELAHGGR 84 (277)
Q Consensus 78 ~~a~~~~ 84 (277)
.|+....
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9988654
No 289
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.7e-14 Score=100.89 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=69.7
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.......+|||+|||..+++++|+++|.+||.|..|.|+.+.. .+||||+|.+.++|++|+..|++ .+.| .
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g----~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG----R 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT----E
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC----E
Confidence 3345678999999999999999999999999999999987753 36999999999999999999998 8988 6
Q ss_pred EEEEeecCC
Q 023765 180 YVRVREYDS 188 (277)
Q Consensus 180 ~i~~~~~~~ 188 (277)
.|.|.....
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 777777654
No 290
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.7e-14 Score=100.09 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=68.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCe-ecccceeeE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSE-FRNAFSRSY 180 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~-~~g~~~~~~ 180 (277)
..+..+|||+|||..+++++|+++|.+ ||.|..|.++.+..+ +||||+|.+.++|.+|+..|||.. +.|+ .
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~----~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK----P 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS----C
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE----e
Confidence 345789999999999999999999999 999999999987632 499999999999999999999999 9994 5
Q ss_pred EEEeecCCC
Q 023765 181 VRVREYDSR 189 (277)
Q Consensus 181 i~~~~~~~~ 189 (277)
|.|......
T Consensus 82 l~v~~a~~~ 90 (104)
T 2dhg_A 82 VRLSVAIPK 90 (104)
T ss_dssp CCCCBCCCC
T ss_pred EEEEEccCC
Confidence 556555433
No 291
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=3e-14 Score=102.29 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
.....++|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|+.|++.|||..+.|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 345678999999999999999999999999999999987643 46999999999999999999999999994
No 292
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.5e-14 Score=100.92 Aligned_cols=74 Identities=14% Similarity=0.096 Sum_probs=65.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
...++|||+|||..+++++|+++|.+||.|..+.+. ...+||||+|.+.++|..|+..|||..+.| ..|.|...
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQG----RNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETT----EECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEec
Confidence 346899999999999999999999999999999988 445799999999999999999999999999 45555544
No 293
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2e-14 Score=100.33 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
...+|||+|||..+++++|.++|.+||.|..|.++.+.. .|||||+|.+.++|..|+. +++..+.|+.+.+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 467999999999999999999999999999999998654 4699999999999999999 99999999655443
No 294
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.56 E-value=2.8e-14 Score=98.60 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=66.3
Q ss_pred CCCCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 105 SRRSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
...+..+|||+|||. .+++++|+++|.+||.|..+.+. .+||||+|.+.++|.+|+..|||..+.| ..|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFG----KKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETT----EECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECC----EEEEE
Confidence 345678999999998 99999999999999999999985 4699999999999999999999999998 56666
Q ss_pred eecC
Q 023765 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
....
T Consensus 90 ~~a~ 93 (97)
T 2xnq_A 90 EVSS 93 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 6654
No 295
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.56 E-value=5.4e-15 Score=100.85 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=63.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
.+|||+|||..+++++|+++|.+|| .|..+.++.+..+ |||||+|.+.++|++|++.|||..+.| ..|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g----r~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG----QNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS----CCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC----EEEEE
Confidence 4799999999999999999999999 9999999987543 599999999999999999999999999 45666
Q ss_pred eecCC
Q 023765 184 REYDS 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
....+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 65543
No 296
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.56 E-value=5e-14 Score=101.99 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=70.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
......++|||+|||..+++++|+++|.+||.|..|.+..+. ..+||||+|.+.++|.+|+..|||..+.| ..
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g----~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG----RP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS----CE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC----cE
Confidence 345667899999999999999999999999999999998875 33699999999999999999999999999 56
Q ss_pred EEEeecCC
Q 023765 181 VRVREYDS 188 (277)
Q Consensus 181 i~~~~~~~ 188 (277)
|.|.....
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 66665543
No 297
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=5.4e-14 Score=95.60 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=67.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|++|+ .|||..+.| ..|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g----~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG----RQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT----EECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC----cEEEEE
Confidence 56899999999999999999999999999999987753 359999999999999999 999999999 677777
Q ss_pred ecCC
Q 023765 185 EYDS 188 (277)
Q Consensus 185 ~~~~ 188 (277)
....
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 6644
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=2.8e-14 Score=103.26 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=66.3
Q ss_pred CCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.+..+|||+|||+.+++++|+ ++|.+||.|..|.+... ...|||||+|.+.++|..|+..|||..+.|+ .|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr----~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN----PL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS----CC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC----EE
Confidence 447899999999999998876 69999999999888653 4457999999999999999999999999994 56
Q ss_pred EEeecCC
Q 023765 182 RVREYDS 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
.|.....
T Consensus 103 ~V~~a~~ 109 (127)
T 2a3j_A 103 VITFSET 109 (127)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 6665543
No 299
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=8.6e-14 Score=95.02 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=68.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.....+|||+|||..+++++|+++|.+| .|..|.++.+.. .+||||+|.+.++|.+|+. |||..+.| ..|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g----r~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG----RYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT----EEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC----cEEE
Confidence 3457899999999999999999999999 999999998743 3599999999999999999 99999999 5777
Q ss_pred EeecCCC
Q 023765 183 VREYDSR 189 (277)
Q Consensus 183 ~~~~~~~ 189 (277)
|.....+
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 7766543
No 300
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-13 Score=94.84 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.+.++|||+|| .+++++|+++|.+||.|..|.+. ...+||||+|.+.++|++|+..|||..+.| ..|.|...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETT----EEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECC----eEEEEEEC
Confidence 45789999996 89999999999999999999885 455799999999999999999999999998 67888877
Q ss_pred CCCC
Q 023765 187 DSRR 190 (277)
Q Consensus 187 ~~~r 190 (277)
....
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 301
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.55 E-value=3.4e-14 Score=101.51 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..+..+|||+|||..+++++|.++|.+||.|..|.+..+.. .+||||+|.+.++|..|+..|||..+.| ..|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN----RYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS----CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC----eEEEEE
Confidence 34478999999999999999999999999999999987644 4699999999999999999999999999 455665
Q ss_pred ecCC
Q 023765 185 EYDS 188 (277)
Q Consensus 185 ~~~~ 188 (277)
....
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 5543
No 302
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=99.73 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=62.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+..|||..+.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 478999999999999999999999999999999987754 46999999999999999999999999984
No 303
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=7.8e-14 Score=100.08 Aligned_cols=77 Identities=10% Similarity=0.053 Sum_probs=65.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE-EEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
...|||+||++.+++++|.++|.+||.|..|.+... .|| |||+|.+.++|..|+..|||..|.|.. ..|+|..++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~--~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGC--CTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB--SEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCC--eEEEEEEec
Confidence 345789999999999999999999999999998764 375 999999999999999999999998731 367777765
Q ss_pred CC
Q 023765 188 SR 189 (277)
Q Consensus 188 ~~ 189 (277)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 304
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=1.4e-14 Score=100.78 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=64.0
Q ss_pred CceEEEeCCCC------CCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecc-cce
Q 023765 109 DYRVLVTGLPS------SASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN-AFS 177 (277)
Q Consensus 109 ~~~l~v~~l~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g-~~~ 177 (277)
.++|||+|||. .+++++|.++|.+||.|..|.++.+..+ |||||+|.+.++|++|+..|||..+.| +.+
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 67999999999 9999999999999999999999987753 699999999999999999999999998 544
Q ss_pred e
Q 023765 178 R 178 (277)
Q Consensus 178 ~ 178 (277)
.
T Consensus 86 ~ 86 (100)
T 3ns6_A 86 F 86 (100)
T ss_dssp E
T ss_pred E
Confidence 3
No 305
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.4e-14 Score=98.06 Aligned_cols=69 Identities=14% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCCceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 107 RSDYRVLVTGLPS-SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 107 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.+..+|||+|||. .+++++|.++|.+||.|..+.+. .+||||+|.+.++|..|+..|||..+.|+.+.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 4578999999998 99999999999999999999996 459999999999999999999999999954443
No 306
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-14 Score=100.95 Aligned_cols=77 Identities=13% Similarity=0.115 Sum_probs=65.4
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC--CeecccceeeEEE
Q 023765 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR--SEFRNAFSRSYVR 182 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g--~~~~g~~~~~~i~ 182 (277)
..+..+|||+|||+. +++++|+++|.+||.|..|.+... .+||||+|.+.++|..|++.|++ ..+.| ..|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G----r~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQG----RCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSSS----SCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceECC----EEEE
Confidence 456889999999998 999999999999999999999754 56999999999999999998864 56888 4566
Q ss_pred EeecCC
Q 023765 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
|.....
T Consensus 96 V~~a~~ 101 (112)
T 1x4f_A 96 VDLSEK 101 (112)
T ss_dssp EEEECS
T ss_pred EEECcc
Confidence 665543
No 307
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=8.4e-14 Score=94.23 Aligned_cols=74 Identities=16% Similarity=0.238 Sum_probs=64.4
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|++|++ +++..++| ..|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g----~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG----RVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT----EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC----EEE
Confidence 34578999999999999999999999999999999998765 3599999999999999996 58888998 455
Q ss_pred EEe
Q 023765 182 RVR 184 (277)
Q Consensus 182 ~~~ 184 (277)
.|.
T Consensus 83 ~v~ 85 (87)
T 3s7r_A 83 DPK 85 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=101.30 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=65.1
Q ss_pred CCCceEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCee-cccceeeEEEE
Q 023765 107 RSDYRVLV--TGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF-RNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~-~g~~~~~~i~~ 183 (277)
.+..+||| +||+..+++++|+++|.+||.|..|.+..+ .+||||+|.+.++|++|++.|||.++ ..-..+..+.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34678999 779999999999999999999999888653 56999999999999999999999988 21111356666
Q ss_pred eecC
Q 023765 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
....
T Consensus 101 ~~a~ 104 (114)
T 2cq2_A 101 NFVE 104 (114)
T ss_dssp EEES
T ss_pred Eecc
Confidence 6654
No 309
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.54 E-value=1.9e-15 Score=105.65 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=58.6
Q ss_pred cCCCCCCCHHHHHHHh------------hccCCeeEEEeecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 12 GNLPGDTRMREVEDLF------------YKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 12 ~nL~~~~t~~~l~~~F------------~~~G~v~~v~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
.||++.+++++|+++| ++||+|..|.|+.+ +.++|||||+|.++++|.+|+..|||..|.|+.|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444555666666665 99999999999653 467899999999999999999999999999999999
Q ss_pred EEc
Q 023765 78 ELA 80 (277)
Q Consensus 78 ~~a 80 (277)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 310
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-14 Score=96.42 Aligned_cols=66 Identities=11% Similarity=0.123 Sum_probs=59.6
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEec--CCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 110 YRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 110 ~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
++|||+|||..+ ++++|+++|.+||.|..+.+... ...|||||+|.+.++|.+|+..|||..+.|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 589999999999 77999999999999999998743 2346999999999999999999999999995
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.8e-14 Score=102.17 Aligned_cols=73 Identities=22% Similarity=0.325 Sum_probs=64.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
..++|||+|||..+++++|+++|.+||.|..|.+.. ..+||||+|.+.++|..|+..|||..+.|+ .|.|...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~----~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHV----PLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSS----BCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCe----EEEEEEC
Confidence 467999999999999999999999999999998874 446999999999999999999999999995 4555444
No 312
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=105.71 Aligned_cols=76 Identities=20% Similarity=0.119 Sum_probs=67.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
...+|||+|||..+++++|+++|.+|| .|..|.++.+..+ |||||+|.+.++|++||..|||..+.| ..|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G----r~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG----EKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT----EEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC----eEe
Confidence 457999999999999999999999999 9999999988544 599999999999999999999999999 566
Q ss_pred EEeecC
Q 023765 182 RVREYD 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 666554
No 313
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=5.4e-14 Score=100.25 Aligned_cols=77 Identities=19% Similarity=0.256 Sum_probs=68.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
....+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|++|| .|||..+.| ..|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG----VPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC----eEEE
Confidence 3467999999999999999999999999999999987654 369999999999999999 999999999 6777
Q ss_pred EeecCC
Q 023765 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
|.....
T Consensus 98 V~~a~~ 103 (114)
T 2cq4_A 98 VQASQA 103 (114)
T ss_dssp EEEHHH
T ss_pred EEecCC
Confidence 776544
No 314
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=1.3e-14 Score=99.97 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=65.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
++..+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|+..||+..+.| ..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----r~l~ 88 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS----RKVK 88 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT----EECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC----cEEE
Confidence 34689999999999999999999999999988777765443 599999999999999999999999999 5666
Q ss_pred Eeec
Q 023765 183 VREY 186 (277)
Q Consensus 183 ~~~~ 186 (277)
|...
T Consensus 89 v~~a 92 (95)
T 2ek1_A 89 LSGP 92 (95)
T ss_dssp EECC
T ss_pred EEec
Confidence 6543
No 315
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=6.8e-14 Score=101.31 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=68.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
...+|||+|||..+++++|+++|.+||.|..|.+..+.. .+||||+|.+.++|..|+ .|||..+.| ..|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g----~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG----RTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT----EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 367999999999999999999999999999999987743 359999999999999999 899999999 67777
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 110 ~~a~~~ 115 (124)
T 2jwn_A 110 LPKRTN 115 (124)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 766543
No 316
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=2e-14 Score=102.57 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCC--CC---CHHHHHHHhhccCCeeEEEeecC-------CCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 023765 4 RSSRTLYVGNLPG--DT---RMREVEDLFYKYGPIVDIDLKIP-------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 4 ~~~~~l~V~nL~~--~~---t~~~l~~~F~~~G~v~~v~~~~~-------~~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 71 (277)
.++++|+|.||-. ++ -+++|+++|++||+|..|.|+.+ +.++|+|||+|.+.++|.+|++.|||..|.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 4789999999932 22 37899999999999999999643 235699999999999999999999999999
Q ss_pred CceEEEEEccC
Q 023765 72 GYRLRVELAHG 82 (277)
Q Consensus 72 g~~i~v~~a~~ 82 (277)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999764
No 317
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.8e-14 Score=95.58 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=61.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc-EEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM-TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~-~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
...+|||+|||..+++++|+++|.+||.|..| +.+..++ ||||+|.+.++|.+|+. |||..+.| ..|.|...
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g----~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG----HRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT----EECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC----EEEEEEEC
Confidence 35799999999999999999999999999987 3333222 99999999999999999 99999999 56666544
Q ss_pred C
Q 023765 187 D 187 (277)
Q Consensus 187 ~ 187 (277)
.
T Consensus 80 ~ 80 (94)
T 2e5g_A 80 E 80 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 318
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=7.6e-14 Score=100.56 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=68.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE-EEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT-GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
.....|||+||++.+++++|.++|.+||.|..|.+..... +| |||+|.+.++|..|++.|||..+.|. ...|+++.
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~-gfqAFVef~~~~~A~~Ai~~LnG~~i~g~--~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN-QFQALLQYADPVSAQHAKLSLDGQNIYNA--CCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETT-EEEEEEEESCHHHHHHHHHHHTTCEEETT--EEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCC-CcEEEEEECCHHHHHHHHHHcCCCeecCC--CcEEEEEe
Confidence 3456788999999999999999999999999998887653 55 99999999999999999999999873 24677777
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
.+..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 6543
No 319
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.5e-13 Score=94.18 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=67.9
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
......+|||+|||..+++++|+++|.+||.|..|.++.+..+ +||||+|.+.++|++|+. ++..++| ..
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g----~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG----RW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT----EE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC----eE
Confidence 3445789999999999999999999999999999999987653 599999999999999998 4678888 67
Q ss_pred EEEeecCCC
Q 023765 181 VRVREYDSR 189 (277)
Q Consensus 181 i~~~~~~~~ 189 (277)
|.|.....+
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 777776554
No 320
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.1e-14 Score=100.65 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=68.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
...+|||+|||..+++++|+++|.+||.|..+.+..+..+ +||||+|.+.++|+.|++.|||..+.| ..|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG----RALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS----SCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC----cEEEE
Confidence 4679999999999999999999999999999999987543 599999999999999999999999999 46666
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
......
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 666543
No 321
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=99.05 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEEec--CCCcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 108 SDYRVLVTGLPSSA------SWQDLKDHMRRAGDVCFSQVFRD--RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 108 ~~~~l~v~~l~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
..++|||+|||..+ ++++|.++|.+||.|..|.+... ...|||||+|.+.++|..|+..|||..+.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~---~ 90 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ---H 90 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT---C
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC---c
Confidence 36799999999999 78999999999999999998833 2346999999999999999999999999993 1
Q ss_pred EEEEeecC
Q 023765 180 YVRVREYD 187 (277)
Q Consensus 180 ~i~~~~~~ 187 (277)
.|.|....
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 56666543
No 322
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.6e-14 Score=99.54 Aligned_cols=79 Identities=16% Similarity=0.240 Sum_probs=70.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
....+|||+|||..+++++|+++|.+||.|..|.++.+.. .+||||+|.+.++|+.||.. ++..+.| ..|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g----~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG----RVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC----EEEE
Confidence 3468999999999999999999999999999999998754 36999999999999999997 9999999 6788
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.....+.
T Consensus 100 V~~a~~~~ 107 (116)
T 1x4b_A 100 PKRAVARE 107 (116)
T ss_dssp EECCSSCC
T ss_pred EEECCCCc
Confidence 88776553
No 323
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.53 E-value=2.8e-14 Score=98.68 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCCCceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEec-CCCcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLK----DHMRRAGDVCFSQVFRD-RGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
..+..+|||+|||..+++++|+ ++|.+||.|..|.+... ...+||||+|.+.++|..|+..|||..+.| ..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD----KP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC----cE
Confidence 3457899999999999999999 99999999999988742 234699999999999999999999999998 66
Q ss_pred EEEeecCCC
Q 023765 181 VRVREYDSR 189 (277)
Q Consensus 181 i~~~~~~~~ 189 (277)
|.|......
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 777766543
No 324
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=2.8e-14 Score=98.51 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=67.3
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+..+|||+|||..+++++|+++|.+||.|..+ .......+||||+|.+.++|.+|+..|||..+.| ..|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG----RSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT----EEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 3457899999999999999999999999998877 3333345699999999999999999999999999 6778877
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
...+
T Consensus 88 a~~~ 91 (96)
T 1fjc_A 88 TGEK 91 (96)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 6544
No 325
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=102.40 Aligned_cols=77 Identities=22% Similarity=0.206 Sum_probs=67.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.......+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++.|||..+.| .
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g----~ 133 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG----R 133 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT----E
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC----E
Confidence 3445688999999999999999999999999999999987643 4699999999999999999999999999 4
Q ss_pred EEEEe
Q 023765 180 YVRVR 184 (277)
Q Consensus 180 ~i~~~ 184 (277)
.|.|.
T Consensus 134 ~l~v~ 138 (140)
T 2ku7_A 134 TIRVN 138 (140)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 326
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.4e-14 Score=98.16 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=62.9
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
+......+|||+|||+.+++++|+++|.+||.|.. |.|..+. ..|||||+|.+.++|++||.. |+..+.|+.+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i 86 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYI 86 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEE
Confidence 34456789999999999999999999999999987 7777653 246999999999999999997 9999999533
No 327
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=98.94 Aligned_cols=75 Identities=28% Similarity=0.331 Sum_probs=65.1
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
....+|||+|||+.+++++|+++|..| .|..|.|+.+.. .|||||+|.+.++|++|| .+|+..+.| ..|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g----r~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ----RYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT----EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC----eEEEE
Confidence 346799999999999999999999999 899999987654 469999999999999999 699999999 56666
Q ss_pred eecC
Q 023765 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
....
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 5543
No 328
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=5.8e-14 Score=99.44 Aligned_cols=77 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCC----------CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023765 4 RSSRTLYVGNLPGDT----------RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~----------t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 73 (277)
.++++|.|.||=... -+++|+++|++||.|..|.|..+ .++|+|||+|.+.++|.+|++.|||..|.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 478999999993322 24578999999999999999654 3589999999999999999999999999999
Q ss_pred eEEEEEcc
Q 023765 74 RLRVELAH 81 (277)
Q Consensus 74 ~i~v~~a~ 81 (277)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 329
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=5.7e-14 Score=102.67 Aligned_cols=79 Identities=6% Similarity=0.130 Sum_probs=67.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEEecCC----CcEEEEEEechhHHHHHHHhcCCC----eeccc
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRS----EFRNA 175 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~----~~~g~ 175 (277)
..+..+|||+|||+.+++++|+++|.+||.|.. |.|+.+.. .|||||+|.+. +|.+|+..|||. .++|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g- 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG- 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC-
Confidence 345789999999999999999999999999976 88887763 36999999999 999999999999 9999
Q ss_pred ceeeEEEEeecCCC
Q 023765 176 FSRSYVRVREYDSR 189 (277)
Q Consensus 176 ~~~~~i~~~~~~~~ 189 (277)
..|.|....+.
T Consensus 98 ---r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 ---KTINVEFAKGS 108 (131)
T ss_dssp ---CCCCCEECCCS
T ss_pred ---EEEEEEECCCC
Confidence 45556655443
No 330
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.5e-13 Score=96.80 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccc----ee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF----SR 178 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~----~~ 178 (277)
....++|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|++|+..|||..+.+.. ..
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999987632 59999999999999999999999997654 23
Q ss_pred eEEEEeecC
Q 023765 179 SYVRVREYD 187 (277)
Q Consensus 179 ~~i~~~~~~ 187 (277)
..|.|...+
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 556666654
No 331
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=3.7e-14 Score=116.10 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCC-cccC---CceEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFD---GYRLRV 77 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~afV~f~~~~~a~~a~~~l~~-~~~~---g~~i~v 77 (277)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|..|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999964 566789999999999999999999955 4444 999999
Q ss_pred EEccCCC
Q 023765 78 ELAHGGR 84 (277)
Q Consensus 78 ~~a~~~~ 84 (277)
.++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9988653
No 332
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=7.4e-14 Score=100.10 Aligned_cols=78 Identities=27% Similarity=0.384 Sum_probs=67.5
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
......+|||+|||+.+++++|+++|..||. |..|.++.+..+ +||||+|.+.++|++||. ||+..+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g---- 87 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH---- 87 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT----
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC----
Confidence 3455789999999999999999999999998 889999877553 599999999999999999 99999999
Q ss_pred eEEEEeecC
Q 023765 179 SYVRVREYD 187 (277)
Q Consensus 179 ~~i~~~~~~ 187 (277)
..|.|....
T Consensus 88 r~i~V~~a~ 96 (118)
T 2db1_A 88 RYIEVFKSH 96 (118)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 566665543
No 333
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=101.26 Aligned_cols=78 Identities=18% Similarity=0.331 Sum_probs=63.6
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
......++|||+|||..+++++|+++|.+|| |..|.+..+. ..|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~--- 88 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR--- 88 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB---
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe---
Confidence 3445678999999999999999999999999 9999998765 2469999999999999999 8999999994
Q ss_pred eEEEEeecC
Q 023765 179 SYVRVREYD 187 (277)
Q Consensus 179 ~~i~~~~~~ 187 (277)
.|.|....
T Consensus 89 -~l~V~~a~ 96 (100)
T 2j76_E 89 -RIRVDVAD 96 (100)
T ss_dssp -CCCCEECC
T ss_pred -EEEEEecc
Confidence 45555443
No 334
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=1.4e-13 Score=97.25 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=66.8
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
...++|||+|||..+++++|+++|.+||.|..|.+..+.. .|||||+|.+.++|.+|+..+ +..+.| ..|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g----~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS----KTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT----EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC----EEEE
Confidence 4578999999999999999999999999999999988754 369999999999999999976 588888 6777
Q ss_pred EeecCCCC
Q 023765 183 VREYDSRR 190 (277)
Q Consensus 183 ~~~~~~~r 190 (277)
|.....+.
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 77765543
No 335
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.50 E-value=1.3e-14 Score=106.66 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=60.6
Q ss_pred cEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHH
Q 023765 46 GYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQD 125 (277)
Q Consensus 46 g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 125 (277)
++||.+|..++.+..++..+..+ +.|...--.. .............+|||+|||+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~------------------g~~~~~~~~~~~~~lfV~nLp~~~te~d 62 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGS------------------GDSEFTVQSTTGHCVHMRGLPYKATEND 62 (139)
T ss_dssp --------------------------------------------------------------CCCCEECCSCCTTCCHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCC------------------CCcccCCCCCCCCEEEEeCCCCCCCHHH
Confidence 67888888888777776654432 2222110000 0001112234467999999999999999
Q ss_pred HHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 126 LKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 126 l~~~f~~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
|+++|.+|| |..|.|+.+.. .+||||+|.+.++|++|| .+|+..+.|+.+
T Consensus 63 L~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i 115 (139)
T 2hgn_A 63 IYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYI 115 (139)
T ss_dssp HHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCC
T ss_pred HHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEE
Confidence 999999999 67898887654 469999999999999999 799999999533
No 336
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.3e-13 Score=96.10 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=61.3
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
......+|||+|||+.+++++|+++|.+||.+ .|.|+.+..+ +||||+|.+.++|++|| .+|+..+.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEE
Confidence 34457899999999999999999999999954 8999887643 49999999999999999 479999999533
No 337
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=92.40 Aligned_cols=71 Identities=15% Similarity=0.233 Sum_probs=60.9
Q ss_pred CceEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 109 DYRVLVTGLPSSASWQD----LKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
.+.|||.|||..+++++ |.++|.+|| +|..|. +|+|||.|.+.++|..|++.|||..+.| ..|++
T Consensus 9 ~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~g----r~i~v 78 (96)
T 2diu_A 9 HTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFG----NRIIV 78 (96)
T ss_dssp SEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSS----SCCEE
T ss_pred ceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCC----ceEEE
Confidence 33499999999999887 568999995 998882 3799999999999999999999999999 57777
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
..+...
T Consensus 79 ~~A~~~ 84 (96)
T 2diu_A 79 SFTPKN 84 (96)
T ss_dssp ESSCCS
T ss_pred EecCCC
Confidence 776554
No 338
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-13 Score=94.13 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
...+..+|||+|||..+++++|+++|..|+ .+.++.+.. .+||||+|.+.++|++||..|||..+.| ..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g----~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG----NK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT----EE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC----eE
Confidence 345678999999999999999999999875 455555543 3599999999999999999999999999 67
Q ss_pred EEEeecCCCC
Q 023765 181 VRVREYDSRR 190 (277)
Q Consensus 181 i~~~~~~~~r 190 (277)
|.|....++.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 7787776554
No 339
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8e-14 Score=99.34 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDV-CFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+|||..+++++|+++|.+||.| ..|.|+.+. ..+||||+|.+.++|++||.. |+..+.| ..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g----r~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG----REA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT----EEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC----eEE
Confidence 3457899999999999999999999999999 888888765 346999999999999999987 9999999 566
Q ss_pred EEeecCC
Q 023765 182 RVREYDS 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
.|.....
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 6665543
No 340
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.49 E-value=5.7e-14 Score=102.82 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
++.....+|||+|||+.+++++|+++|.+||. |..|.|+.+..+ |||||+|.+.++|++||. ||+..+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g--- 114 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH--- 114 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS---
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC---
Confidence 34455789999999999999999999999999 888999877653 599999999999999999 99999999
Q ss_pred eeEEEEeec
Q 023765 178 RSYVRVREY 186 (277)
Q Consensus 178 ~~~i~~~~~ 186 (277)
..|.|...
T Consensus 115 -r~i~V~~a 122 (136)
T 2hgl_A 115 -RYIEVFKS 122 (136)
T ss_dssp -SEEEEEEC
T ss_pred -EEEEEEEC
Confidence 46666544
No 341
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=4.3e-14 Score=92.86 Aligned_cols=66 Identities=21% Similarity=0.301 Sum_probs=59.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
+|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|++ ||+..++|+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l 70 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMV 70 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEE
Confidence 489999999999999999999999999999987653 3699999999999999997 99999999543
No 342
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.9e-14 Score=100.66 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=61.5
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-CC---CcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-RG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.+.....+|||+|||+.+++++|+++|..||.|..+.++.+ .. .+||||+|.+.++|.+||. |||..|.|+.+.
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 34456789999999999999999999999999987444333 22 3599999999999999999 999999995443
No 343
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.49 E-value=2.1e-13 Score=104.73 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=67.0
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
...+.++|||+|||..+++++|+++|.+||.|..|.|..+. ..+||||+|.+.++|++|++.|||..+.|+.+.+.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999998765 33699999999999999999999999999544433
No 344
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=1.6e-13 Score=92.82 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=60.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhc----C-------CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRA----G-------DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
...+|||+|||..+++++|+++|.+| | .|..+.+..+ .+||||+|.+.++|.+|+ .|||..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 46899999999999999999999999 8 8988888765 579999999999999999 9999999994
No 345
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=9e-14 Score=94.29 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=65.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
..+|||+|||..+++++|+++|.+| .|..+.+. ...+||||+|.+.++|++|++.|||..+.| ..|.|.....
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g----~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG----KDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETT----EEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECC----cEEEEEEcCC
Confidence 6789999999999999999999999 99999885 556799999999999999999999999999 5677766543
No 346
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.6e-13 Score=95.86 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=67.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEE-ecC----CCcEEEEEEechhHHHHHHHhcC--CCeecccceee
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVF-RDR----GGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAFSRS 179 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~----~~~~~fv~f~~~~~a~~a~~~l~--g~~~~g~~~~~ 179 (277)
+.++|||+|||..+++++|.++|.+||. |..+.++ .+. ..+||||+|.+.++|..|+..|| +..+.| .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g----~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG----H 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT----B
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC----C
Confidence 4689999999999999999999999998 9999887 443 34699999999999999999996 589998 5
Q ss_pred EEEEeecCCC
Q 023765 180 YVRVREYDSR 189 (277)
Q Consensus 180 ~i~~~~~~~~ 189 (277)
.|.|....+.
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 6677766554
No 347
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=9.4e-14 Score=91.67 Aligned_cols=68 Identities=16% Similarity=0.235 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
++|||+|||..+++++|+++|.+||.|..+.+..++. .+||||+|.+.++|++|+..++ ..+.|+.+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~ 72 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTID 72 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEE
Confidence 3799999999999999999999999999999987754 4699999999999999999999 999985443
No 348
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=2e-13 Score=109.29 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=66.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAG--DVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
..++|||+||+..+++++|+++|.+|| .|..|.|+.+..+ +||||+|.+.++|++||+.||+..|.|+ .|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr----~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ----NP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB----CC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE----Ee
Confidence 467899999999999999999999999 9999999988644 4999999999999999999999999994 55
Q ss_pred EEeecC
Q 023765 182 RVREYD 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 565443
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.46 E-value=3.4e-13 Score=91.55 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=59.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+.++|||+|||.++++++|+++|.+||.|..|.++.+ ..|||||+|.+.++|.+ +++..+.+. +..|.+..
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~--g~~v~v~~ 80 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIK--GISVHISN 80 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEET--TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccC--CEEEEEEE
Confidence 345789999999999999999999999999999999876 56799999999999883 566665421 15666666
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 5443
No 350
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=94.31 Aligned_cols=78 Identities=17% Similarity=0.205 Sum_probs=64.4
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE---EEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS---QVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~---~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
....+|||+|||..+++++|+++|.+||.|..+ ........+||||+|.+.++|++|++ |||..+.| ..|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g----~~l~V 89 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG----NEIKL 89 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT----BCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC----cEEEE
Confidence 357899999999999999999999999987661 12234456799999999999999998 99999999 56677
Q ss_pred eecCCC
Q 023765 184 REYDSR 189 (277)
Q Consensus 184 ~~~~~~ 189 (277)
.....+
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 766543
No 351
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.46 E-value=9.4e-14 Score=94.62 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=61.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.+ |..|+..|||..+.|+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~ 73 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIR 73 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEE
Confidence 4799999999999999999999999999999987654 469999999999 9999999999999995443
No 352
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=97.36 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGD---VCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
.....+|||+|||+.+++++|+++|..||. |..|.+..+.. .|||||+|.+.++|.+||. +|+..+.|+.+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 345789999999999999999999999988 88999887654 4699999999999999999 99999999543
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=3.3e-13 Score=97.00 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023765 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
.....+|||+|| .+++++|+++|.+||.|..|.+. ...+||||+|.+.++|+.|+..|||..+.| ..|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g----~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVES----VQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSS----CBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECC----eEEEEEE
Confidence 345789999996 69999999999999999999886 455799999999999999999999999998 5666666
Q ss_pred cCCC
Q 023765 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
....
T Consensus 108 a~~~ 111 (121)
T 2bz2_A 108 ARKQ 111 (121)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 6544
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=4e-13 Score=99.73 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=66.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEE-ecCCCcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVF-RDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
.+..+|||+|||..+++++|.++|.+||.|.. +.+. .+...+||||+|.+.++|..|+..|||..+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g--- 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG--- 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC---
Confidence 34689999999999999999999999998865 3333 34556799999999999999999999999999
Q ss_pred eeEEEEeecCCC
Q 023765 178 RSYVRVREYDSR 189 (277)
Q Consensus 178 ~~~i~~~~~~~~ 189 (277)
..|.|..+...
T Consensus 120 -~~l~V~~a~~~ 130 (143)
T 3egn_A 120 -KPMVVQFARSA 130 (143)
T ss_dssp -EECEEEECCCS
T ss_pred -cEEEEEECCCC
Confidence 67777776544
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=97.14 Aligned_cols=68 Identities=15% Similarity=0.152 Sum_probs=59.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDV----CFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
....+|||+|||+.+++++|+++|.+||.| ..|.|+.+..+ |||||+|.+.++|++||.. |+..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 446899999999999999999999999975 57888876433 5999999999999999986 99999885
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=2.2e-13 Score=89.44 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=59.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
+|||+|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|..|+. +++..+.|+.+.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 589999999999999999999999999999987643 4699999999999999998 588999995443
No 357
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.42 E-value=5.5e-13 Score=96.04 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=61.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023765 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC--FSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
......+|||+|||+.+++++|+++|.+| .|. .|.|+.+.. .|||||+|.+.++|++||. +++..+.|+.+.+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 34457899999999999999999999999 666 788887654 4699999999999999998 5779999964433
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.3e-13 Score=91.46 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=60.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCee--cccceeeEEEEee
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF--RNAFSRSYVRVRE 185 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~--~g~~~~~~i~~~~ 185 (277)
...+|||+|||..+++++|+++|.+||.|..|.+..+ ..+||||+|.+.++|++| ++..+ .| ..|.+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~~~g----~~l~v~~ 74 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLIIKG----ISVHISN 74 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEEETT----EEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCceeCC----EEEEEEe
Confidence 3689999999999999999999999999999999876 557999999999999753 44444 44 5677776
Q ss_pred cCCCC
Q 023765 186 YDSRR 190 (277)
Q Consensus 186 ~~~~r 190 (277)
..++.
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 65543
No 359
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.40 E-value=8.8e-13 Score=91.96 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=60.7
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccc
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
...++|||+|||..+++++|.++|.+||.|..|.++.+..+ +||||+|.+.++|++|+. ++..++|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 34689999999999999999999999999999999987632 599999999999999998 888888843
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.1e-12 Score=91.48 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=64.2
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEec----hhH----HHHHHH--hcCCCe
Q 023765 110 YRVLVTGL----PSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTS----YDD----MKYAIR--KLDRSE 171 (277)
Q Consensus 110 ~~l~v~~l----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fv~f~~----~~~----a~~a~~--~l~g~~ 171 (277)
..|+|+|| |+.+++++|+++|..||+|..+.++.++.++ ||||+|.+ +++ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999998874 99999996 433 788988 789999
Q ss_pred ecccceeeEEEEeecC
Q 023765 172 FRNAFSRSYVRVREYD 187 (277)
Q Consensus 172 ~~g~~~~~~i~~~~~~ 187 (277)
|+| ..|+|..++
T Consensus 83 I~G----r~irV~ln~ 94 (136)
T 2j8a_A 83 IMG----FKFEVILNK 94 (136)
T ss_dssp ETT----EEEEEEECC
T ss_pred ecC----cEEEEEECc
Confidence 999 667776554
No 361
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.09 E-value=3.2e-14 Score=101.81 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=67.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
+..+|||+|||..+++++|+++|.+||.|.. |.++.+.. .+||||+|.+.++|.+|+..|||..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g- 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG- 84 (116)
Confidence 4679999999999999999999999999988 77876643 4699999999999999999999999999
Q ss_pred ceeeEEEEeecCCC
Q 023765 176 FSRSYVRVREYDSR 189 (277)
Q Consensus 176 ~~~~~i~~~~~~~~ 189 (277)
..|.|.....+
T Consensus 85 ---~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 ---NPIKVSFATRR 95 (116)
Confidence 56667666544
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.37 E-value=1.5e-11 Score=95.67 Aligned_cols=117 Identities=13% Similarity=0.170 Sum_probs=80.9
Q ss_pred ChHHHHHHHHhc--CCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHH
Q 023765 54 DYRDAEDAIRGR--DGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR 131 (277)
Q Consensus 54 ~~~~a~~a~~~l--~~~~~~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 131 (277)
+.+.+..|+... ....+.+....|....... .+... ..........+|||+|||..+++++|+++|.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p-~p~~~----------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~ 131 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKP-LPEVT----------DEYKNDVKNRSVYIKGFPTDATLDDIKEWLE 131 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSC-CCCCC----------HHHHHHHHHTEEEEECCCTTCCHHHHHHHHT
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCC-Ccccc----------hhhhhccccCEEEecCCCCcCCHHHHHHHHh
Confidence 566777777766 5555555555555442111 00000 0000112357999999999999999999999
Q ss_pred hcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023765 132 RAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 132 ~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
+||.|..|.+..+.. .|||||+|.+.++|.+|+..++ ..+.|+ .|.|...
T Consensus 132 ~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr----~l~V~~~ 184 (193)
T 2voo_A 132 DKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKET----DLLILFK 184 (193)
T ss_dssp TSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE----ECEEEET
T ss_pred cCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCE----EEEEEEh
Confidence 999999999987654 3699999999999999998665 589984 5555443
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=9.6e-12 Score=88.16 Aligned_cols=80 Identities=16% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCCCceEEEeCCCCCCC-----------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecc
Q 023765 106 RRSDYRVLVTGLPSSAS-----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (277)
+.+..+|+|.||..... +++|+++|.+||.|..|.|......|||||+|.+.++|++|+..|||..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34578999999944432 5799999999999999977544456899999999999999999999999999
Q ss_pred cceeeEEEEeecCCC
Q 023765 175 AFSRSYVRVREYDSR 189 (277)
Q Consensus 175 ~~~~~~i~~~~~~~~ 189 (277)
..|.|....+.
T Consensus 92 ----r~l~v~~a~~~ 102 (112)
T 2dit_A 92 ----RQITAQAWDGT 102 (112)
T ss_dssp ----EECEEEECCSC
T ss_pred ----cEEEEEEeCCC
Confidence 57777776554
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=8.4e-13 Score=94.00 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=52.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec-------CCCcEEEEEEechhHHHHHHHhc
Q 023765 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD-------RGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-------~~~~~~fv~f~~~~~a~~a~~~l 167 (277)
...+|||+|||..+++++|+++|.+||.|. +.++.+ ...+||||+|.+.++|++|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 467999999999999999999999999999 766654 33569999999999999999998
No 365
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=5.8e-12 Score=87.98 Aligned_cols=77 Identities=14% Similarity=0.174 Sum_probs=64.1
Q ss_pred CCCceEEEeCCCC-----CCCHHHHHHHHHhcCCeeEEEEEecC-----CCcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023765 107 RSDYRVLVTGLPS-----SASWQDLKDHMRRAGDVCFSQVFRDR-----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 107 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
.+..+|+|.||.. +.++++|+++|.+||.|..|.|+.++ ..|||||+|.+.++|.+|+..|||..++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-- 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-- 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT--
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC--
Confidence 3467999999963 23689999999999999999998764 34799999999999999999999999999
Q ss_pred eeeEEEEeecC
Q 023765 177 SRSYVRVREYD 187 (277)
Q Consensus 177 ~~~~i~~~~~~ 187 (277)
..|.+....
T Consensus 84 --r~i~v~~a~ 92 (105)
T 2pe8_A 84 --RVVKACFYN 92 (105)
T ss_dssp --EECEEEECC
T ss_pred --cEEEEEEcC
Confidence 556665543
No 366
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.4e-12 Score=88.12 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcC-hHHHHHHHHhcC--CcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED-YRDAEDAIRGRD--GYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~ 79 (277)
.+.+.|+|+||++. ++.++|+++|++||+|..|.+.... ..|||.|.+ +++|..|+..|| +..|.|..+.++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46789999999999 9999999999999999999997643 379999999 899999999994 7889999899887
Q ss_pred ccC
Q 023765 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
...
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 653
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.27 E-value=1.1e-11 Score=98.88 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=59.8
Q ss_pred CCCCceEEEeCCCCCC---------CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCee
Q 023765 106 RRSDYRVLVTGLPSSA---------SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (277)
.....+|||+||+..+ ++++|.++|.+||+|..|.|+.. .+||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3457899999999998 79999999999999999999864 46999999999999999999999999
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.1e-11 Score=80.08 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=62.0
Q ss_pred CCCeEEEcCCC----CCCCH----HHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023765 5 SSRTLYVGNLP----GDTRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 5 ~~~~l~V~nL~----~~~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~ 76 (277)
+--||+|.-++ .++-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|+. |||..+.|+.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeEEE
Confidence 45577777766 23434 678999999999999999853 49999999999999999 999999999999
Q ss_pred EEEccCCC
Q 023765 77 VELAHGGR 84 (277)
Q Consensus 77 v~~a~~~~ 84 (277)
|.++.+.-
T Consensus 80 V~lkt~dW 87 (91)
T 2dnr_A 80 IALKSPSG 87 (91)
T ss_dssp EEECCCSS
T ss_pred EEeCCCCc
Confidence 99988643
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.24 E-value=2.9e-11 Score=84.41 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=61.5
Q ss_pred CCceEEEeCC--CCCCC--------HHHHHHHHHhcCCeeEEEEEecC------CCcEEEEEEechhHHHHHHHhcCCCe
Q 023765 108 SDYRVLVTGL--PSSAS--------WQDLKDHMRRAGDVCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSE 171 (277)
Q Consensus 108 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~------~~~~~fv~f~~~~~a~~a~~~l~g~~ 171 (277)
+..+|.|.|+ |..+. +++|+++|.+||.|..|.|+.+. ..|+|||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3678999998 33332 47899999999999999998764 34799999999999999999999999
Q ss_pred ecccceeeEEEEeec
Q 023765 172 FRNAFSRSYVRVREY 186 (277)
Q Consensus 172 ~~g~~~~~~i~~~~~ 186 (277)
++| ..|.+...
T Consensus 84 f~G----R~i~v~~~ 94 (105)
T 3v4m_A 84 FAN----RVVVTKYC 94 (105)
T ss_dssp ETT----EECEEEEE
T ss_pred eCC----CEEEEEEe
Confidence 999 45555543
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.23 E-value=1.6e-11 Score=103.04 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=59.0
Q ss_pred CCCCceEEEeC--CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023765 106 RRSDYRVLVTG--LPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 106 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~ 173 (277)
..+..+|||+| |+..+++++|+++|.+||+|..|.+.. ..+||||+|.+.++|++|++.|||.++.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 34578999999 578999999999999999999887754 4579999999999999999999999994
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=6.2e-11 Score=83.79 Aligned_cols=76 Identities=12% Similarity=0.068 Sum_probs=62.5
Q ss_pred CCCceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023765 107 RSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
.+..+|.+.|+-.... +++|+++|.+||.|..|.|..+...|++||+|.+.++|.+|+..|||.+++|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR- 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK- 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE-
Confidence 3467888998733221 46899999999999999998877778999999999999999999999999994
Q ss_pred eeeEEEEeec
Q 023765 177 SRSYVRVREY 186 (277)
Q Consensus 177 ~~~~i~~~~~ 186 (277)
.|.+...
T Consensus 84 ---~i~v~~~ 90 (114)
T 3s6e_A 84 ---MITAAYV 90 (114)
T ss_dssp ---ECEEEEE
T ss_pred ---EEEEEEE
Confidence 5555443
No 372
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.21 E-value=5.5e-11 Score=84.63 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCceEEEeCCCC--CC---CHHHHHHHHHhcCCeeEEEEEecCCC--------cEEEEEEechhHHHHHHHhcCCCeecc
Q 023765 108 SDYRVLVTGLPS--SA---SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 108 ~~~~l~v~~l~~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g 174 (277)
+..+|+|.|+-. ++ -+++|+++|.+||.|..|.|+.+..+ |++||+|.+.++|.+|+..|||.+++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 22 37899999999999999999877532 699999999999999999999999999
Q ss_pred cceeeEEEEeec
Q 023765 175 AFSRSYVRVREY 186 (277)
Q Consensus 175 ~~~~~~i~~~~~ 186 (277)
+ .|.+...
T Consensus 99 R----~i~v~~~ 106 (118)
T 3ue2_A 99 R----KVVAEVY 106 (118)
T ss_dssp E----ECEEEEE
T ss_pred c----EEEEEEc
Confidence 4 4555443
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.9e-10 Score=81.36 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=63.5
Q ss_pred CCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEec-hhHHHHHHHhcC--CCeeccccee
Q 023765 104 VSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTS-YDDMKYAIRKLD--RSEFRNAFSR 178 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~-~~~a~~a~~~l~--g~~~~g~~~~ 178 (277)
...+.+..|+|+||+.. ++.++|+++|.+||+|.+|.+..+.. .|||.|.+ .++|..|+..|+ +..|.|....
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34566899999999999 99999999999999999999988876 69999999 899999999994 6777774333
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.11 E-value=2.7e-11 Score=84.49 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=52.9
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023765 114 VTGLPSSASWQDLKDHM------------RRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 114 v~~l~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~---~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
+.||+..+++++|+++| .+||.|..|.|+.+.. .|||||+|.+.++|.+|+..|||..++|+.+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666677777666555 9999999999987653 4699999999999999999999999999533
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.7e-09 Score=74.51 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023765 119 SSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 119 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
..+++++|+++|.+||.|..|.|+ ....|||||+|.+.++|+.|+..+++ +.| ..|.|......
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g----~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVD----NPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSS----SBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCC----CeEEEEEccCC
Confidence 468999999999999999999988 35567999999999999999998655 445 45666665443
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.7e-10 Score=75.87 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCC-----CCH----HHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceE
Q 023765 5 SSRTLYVGNLPGD-----TRM----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (277)
Q Consensus 5 ~~~~l~V~nL~~~-----~t~----~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i 75 (277)
+--||+|.-++.. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeEE
Confidence 5568888888643 323 568899999999999999854 39999999999999999 99999999999
Q ss_pred EEEEcc
Q 023765 76 RVELAH 81 (277)
Q Consensus 76 ~v~~a~ 81 (277)
.|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 998743
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.6e-09 Score=86.24 Aligned_cols=78 Identities=21% Similarity=0.247 Sum_probs=64.3
Q ss_pred CCCeEEEcCCC-----CCCCHHHHHHHhhccCCeeEEEeec-------CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC
Q 023765 5 SSRTLYVGNLP-----GDTRMREVEDLFYKYGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 5 ~~~~l~V~nL~-----~~~t~~~l~~~F~~~G~v~~v~~~~-------~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g 72 (277)
.+..+.+.|+- ..-.+++|.+.|++||+|..+.+.. ++.++|++||+|.+.++|.+|+..|||..|.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34555555552 2345788999999999999999952 23678999999999999999999999999999
Q ss_pred ceEEEEEccC
Q 023765 73 YRLRVELAHG 82 (277)
Q Consensus 73 ~~i~v~~a~~ 82 (277)
+.|.|.++..
T Consensus 203 r~i~~~~~~~ 212 (222)
T 3dxb_A 203 RKVVAEVYDQ 212 (222)
T ss_dssp SBCEEEECCH
T ss_pred eEEEEEEcCH
Confidence 9999999763
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.6e-09 Score=70.15 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=56.4
Q ss_pred CceEEEeCCCC----CC-C---HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023765 109 DYRVLVTGLPS----SA-S---WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 109 ~~~l~v~~l~~----~~-~---~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
..+|+|.-.+. +. . ..+|.+.|.+||+|..+.+..+. +||+|.+.++|.+|+. |||..++| ..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~G----r~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLN----RT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETT----EE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCC----eE
Confidence 55666666552 22 2 36799999999999999999884 9999999999999998 99999999 56
Q ss_pred EEEeecC
Q 023765 181 VRVREYD 187 (277)
Q Consensus 181 i~~~~~~ 187 (277)
|+|..+.
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 6666554
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.86 E-value=1.4e-08 Score=68.89 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-----CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKY-----GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~-----G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
..++|-|-|||-.+++..|+.|++++ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|+.|.|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 47899999999999999999999999 99999999754 46799999999999999988999999999999865
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=1.2e-08 Score=67.88 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=57.8
Q ss_pred CCceEEEeCCCCC-----C-C---HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 108 SDYRVLVTGLPSS-----A-S---WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 108 ~~~~l~v~~l~~~-----~-~---~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
+..+|+|.-++.. + . ..+|.+.|.+||+|..+.+..+. +||+|.+.++|.+||. |||.+++|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G---- 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG---- 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT----
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC----
Confidence 3678888877632 2 2 25699999999999999999884 9999999999999998 99999999
Q ss_pred eEEEEeec
Q 023765 179 SYVRVREY 186 (277)
Q Consensus 179 ~~i~~~~~ 186 (277)
..|+|...
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 56666554
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=2e-07 Score=62.80 Aligned_cols=90 Identities=23% Similarity=0.277 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc----c-CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 3 SRSSRTLYVGNLPGDTRMREVEDLFYK----Y-GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~t~~~l~~~F~~----~-G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
+....+|.|.|||+.+.++.|.-+|++ . |+|..|.... +-|+|+|.+.+.|+..++ -....|.+..|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEE
Confidence 346789999999999999999999987 2 5999998862 789999999999999998 3367888999999
Q ss_pred EEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCC
Q 023765 78 ELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSAS 122 (277)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 122 (277)
....... ..+|.+.+|++.++
T Consensus 79 ~P~~~~~------------------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPPRA------------------------PARLLLQGLPPGTS 99 (104)
T ss_dssp EECCCCC------------------------CCCCCCCSCCCCCC
T ss_pred EcCCCCC------------------------cceEeeecCCCCCC
Confidence 7754322 45677778877664
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.44 E-value=4.4e-07 Score=72.01 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=49.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCC--------cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 122 SWQDLKDHMRRAGDVCFSQVFRDRGG--------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 122 ~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.+++|.+.|.+||.|..+.|..+..+ |++||+|.+.++|.+|+..|||.+++|+.+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 46889999999999999999855332 6999999999999999999999999995443
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=9.4e-07 Score=59.88 Aligned_cols=78 Identities=19% Similarity=0.126 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCC-C----HHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023765 3 SRSSRTLYVGNLPGDT-R----MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 3 ~~~~~~l~V~nL~~~~-t----~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v 77 (277)
+.-.++|+|+||+..+ + .+.++++|..|+++....+... -.=..|.|.++++|.+|-..|++..|.|..|.|
T Consensus 2 s~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CSCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CCCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3456899999998865 3 2577899999999888888643 346799999999999999999999999999999
Q ss_pred EEccCC
Q 023765 78 ELAHGG 83 (277)
Q Consensus 78 ~~a~~~ 83 (277)
.++++.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.22 E-value=9.2e-06 Score=55.23 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=61.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhc-----CCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRA-----GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
..+|-+-|||..++...|+.++.++ |.+..+.+..+.. -|+|+|.+...|-+|.-.|+|.+|.| ..|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~g----r~Lr~ 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQG----KVIRS 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETT----EEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecC----eEEEe
Confidence 5689999999999999999999999 9999988887765 49999999999999999999999998 45554
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.18 E-value=1.6e-05 Score=52.91 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-----CCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-----eEE
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-----RLR 76 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~-----~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-----~i~ 76 (277)
++|.|.+||+.+|++++.+.+..+..+....+... ...-.-|||.|.+.+++....+.++|..|.+. ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 58999999999999999999999988877766331 12235799999999999999999999888543 234
Q ss_pred EEEcc
Q 023765 77 VELAH 81 (277)
Q Consensus 77 v~~a~ 81 (277)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 55554
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=9.8e-06 Score=53.92 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (277)
.+.++| ++|+.+...||.++|+.||.|.--.+. -..|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid-----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID-----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE-----TTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc-----CCeEEEEecCHHHHHHHHHhcc
Confidence 456777 999999999999999999954444443 3589999999999999998663
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.96 E-value=5.3e-05 Score=52.81 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC-ceEEEEEcc
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG-YRLRVELAH 81 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~a~ 81 (277)
+.+.|.|-+.|+. ..+.|...|++||+|.+.... ...++..|.|.+..+|.+|+. .||..|.| ..|-|....
T Consensus 23 ~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3567999999988 478888999999999998873 336899999999999999999 89999985 667777754
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=53.53 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=44.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 66 (277)
+.++| ++|+.+...||.++|+.||.| .|.+.. -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 45667 999999999999999999933 333433 3589999999999999999764
No 389
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.67 E-value=0.00015 Score=48.50 Aligned_cols=77 Identities=18% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CC--CCCcEEEEEEcChHHHHHHHHhcCCcccCCc-----e
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-----R 74 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~---~~--~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-----~ 74 (277)
.+-+|.|..|||.+|++++.+.+..+=++....+.. +. ..-.-|||.|.+.+++....+.++|..|.+. +
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 466899999999999999988887765544333321 11 1224589999999999999999999888543 2
Q ss_pred EEEEEcc
Q 023765 75 LRVELAH 81 (277)
Q Consensus 75 i~v~~a~ 81 (277)
..|++|.
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4455554
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.58 E-value=0.00092 Score=44.42 Aligned_cols=67 Identities=13% Similarity=0.325 Sum_probs=57.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC------cEEEEEEechhHHHHHHHhcCCCeecccc
Q 023765 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
.+|.|.+||+.+|++++.+.+....++....+..+... .-|+|.|.+.+++..-.+.++|..+-+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~k 74 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNK 74 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCC
Confidence 47899999999999999999999988877777655432 27999999999999999999999886644
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.49 E-value=0.00077 Score=44.87 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=45.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (277)
...++| ++|+.+...||.++|..||.|. |.++.+. .|||.|.+.+.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 556777 9999999999999999999543 4444443 69999999999999998653
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.38 E-value=0.00042 Score=48.95 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEE-eec---------------CC-CCCcEEEEEEcChHHHHHHHHhcC
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDID-LKI---------------PP-RPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~-~~~---------------~~-~~~g~afV~f~~~~~a~~a~~~l~ 66 (277)
....-|.|-+.|+. ....|...|++||.|.+-. +.. .. ...++..|+|.+..+|.+|+. .|
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 45677889999655 5667788999999987722 110 00 135678999999999999999 99
Q ss_pred CcccCCceEEEEEcc
Q 023765 67 GYNFDGYRLRVELAH 81 (277)
Q Consensus 67 ~~~~~g~~i~v~~a~ 81 (277)
|..|.|..|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988888765
No 393
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.37 E-value=0.00081 Score=45.52 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=58.2
Q ss_pred CceEEEeCCCCCC-C----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 109 DYRVLVTGLPSSA-S----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 109 ~~~l~v~~l~~~~-~----~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
.++|+|.||+..+ . .+.++++|..|+++........-. -..|.|.+.++|.+|-..||+..+.|. .+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~----~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK----EMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE----ECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc----eeEE
Confidence 5689999998755 2 367899999999988766655432 478999999999999999999999994 5566
Q ss_pred eecC
Q 023765 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
....
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 5544
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0013 Score=44.37 Aligned_cols=70 Identities=19% Similarity=0.227 Sum_probs=53.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHh-----cCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRR-----AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
..+|.|.|||+.+.++.|+-+|+. -|+|..+.... .-|+|+|.+.+.|+..|+. ....+.+ ..+.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~----~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHG----AQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSS----SBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecC----eEEEE
Confidence 579999999999999999999997 24787777655 3699999999999999974 2334444 34445
Q ss_pred eecC
Q 023765 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
..+.
T Consensus 79 ~P~~ 82 (104)
T 2dhx_A 79 RPAP 82 (104)
T ss_dssp EECC
T ss_pred EcCC
Confidence 4443
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.0007 Score=45.20 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=44.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (277)
...++| ++|+.+...||.++|..|| -..|.++.+. .|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 345666 9999999999999999999 3345555443 69999999999999998764
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.25 E-value=0.0015 Score=45.52 Aligned_cols=65 Identities=18% Similarity=0.179 Sum_probs=53.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023765 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
.....|.|-++|+.. ...|..+|.+||+|..... ......-.|.|.+..+|++||. .||..++|.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 346789999998885 6678899999999988776 3334589999999999999997 799999863
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.11 E-value=0.00028 Score=61.37 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 5 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
+.++|+|. .|..+++.+|.++|++||+|..+.+..+. .-||.|||.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 45789997 79999999999999999999999997543 4799999999999998876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.59 E-value=0.0045 Score=41.37 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=52.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC------cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~~fv~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.-+|.|..||+.+|++++.+.+...-++....+..+... .-|+|.|.+.+++..-.+.++|..+-+....
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~ 84 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGL 84 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCC
Confidence 568999999999999998888876655433333222211 1689999999999999999999998665433
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.47 E-value=0.0097 Score=51.75 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=42.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHH
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~ 165 (277)
...|+|. .|..+++.+|.++|++||.|..+.+..+.. .||.|||.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 4689997 688999999999999999999998887543 599999999999987764
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.93 E-value=0.045 Score=38.64 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=47.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEe--------------cC---CCcEEEEEEechhHHHHHHHhcCCC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFR--------------DR---GGMTGIVDYTSYDDMKYAIRKLDRS 170 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~--------------~~---~~~~~fv~f~~~~~a~~a~~~l~g~ 170 (277)
...|.|-+.|+..+. .+.+.|.+||.|.. +.+.. -+ ......|.|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 457888888766554 46788999999866 21111 01 12377899999999999996 8999
Q ss_pred eecccc
Q 023765 171 EFRNAF 176 (277)
Q Consensus 171 ~~~g~~ 176 (277)
.++|..
T Consensus 85 ii~G~m 90 (132)
T 3p3d_A 85 VFNGVL 90 (132)
T ss_dssp EETTEE
T ss_pred EeCcEE
Confidence 999943
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.18 E-value=0.1 Score=46.15 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~ 67 (277)
.+.++|+ +|+.+...+|.++|+.||.|. |.+.. ...|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wid----dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWID----DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECS----SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEc----CCeEEEEECCHHHHHHHHHHHHh
Confidence 3466776 899999999999999999653 33332 45799999999999999987753
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.80 E-value=3.4 Score=26.70 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=53.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
+.++-|.|-|||..+-..++.-.....|---.+... .|.|+|.|.+.++-..|+..|-+. ....|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 567889999999999999988888888866666665 578999999999999888765321 234555555
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.94 E-value=1.5 Score=38.67 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=44.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcC
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD 168 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~ 168 (277)
...++|+ +|..+...+|.+.|..||.+ .|.++.+. .|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHH
Confidence 4567776 89999999999999999954 34443332 69999999999999998875
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.82 E-value=5.4 Score=24.81 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=43.0
Q ss_pred eEEEcCC-CCCCCHHHHHHHhhccC-----CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023765 8 TLYVGNL-PGDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 8 ~l~V~nL-~~~~t~~~l~~~F~~~G-----~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~ 81 (277)
+|+|..= ...+...+|..++..-+ .|-.|.+. ..|.||+... +.|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 4555311 33577888888887543 45566665 4688998864 55778888899999999999988754
No 405
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.77 E-value=10 Score=24.49 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=41.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
-|+-.+...++..+|++.++. || .|..|+.+..+....-|||.+....+|.....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 344556779999999999986 66 78888776654445569999998888776543
No 406
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.73 E-value=11 Score=24.55 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=27.4
Q ss_pred CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 023765 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (277)
+|..+.++. ...||.||++...+++..++..+.|.
T Consensus 39 ~i~~v~vP~--~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASE--SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECT--TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEec--ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 466666553 46899999999999999999877763
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=76.61 E-value=4.1 Score=30.08 Aligned_cols=56 Identities=18% Similarity=0.178 Sum_probs=39.5
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCeeEEEeecCCCCCcEEEEEEcChHH-HHHHHH
Q 023765 8 TLYVGNLPG-D--------TRMREVEDLF--YKYGPIVDIDLKIPPRPPGYAFLEFEDYRD-AEDAIR 63 (277)
Q Consensus 8 ~l~V~nL~~-~--------~t~~~l~~~F--~~~G~v~~v~~~~~~~~~g~afV~f~~~~~-a~~a~~ 63 (277)
++.|-|+|. . ....+|.+.| ..|.++.-..+.....+.|+|.|+|..--. -..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 467888887 2 3457899977 899988876665555668999999985443 333443
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=70.94 E-value=13 Score=23.85 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHH
Q 023765 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (277)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (277)
-|+-.+.+.++..||++.++. || .|..|+.........-|||.+...++|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHH
Confidence 345556789999999999986 67 8888877665444556999998877765544
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=65.82 E-value=1 Score=32.62 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=19.9
Q ss_pred HHHHHHhhccCCeeEEEeecCCCCCcEEEEEEc
Q 023765 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (277)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (277)
+|+.+||...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5667788888888887664 899999976
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.85 E-value=29 Score=22.32 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=42.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHhc
Q 023765 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 167 (277)
..++......++..+|++.+++ |+ .|..|..+.-+.+ ..|+|.+....+|.+....+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3445556778999999999886 66 6777776655444 37999999988888776544
No 411
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=57.78 E-value=42 Score=23.82 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHhc
Q 023765 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 167 (277)
..++..+...++..+|++.+++ |+ .|..|..+.-+.+ ..|+|.+....+|.+....+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 4555667788999999988886 56 6777777655544 37999998888887765543
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=57.69 E-value=46 Score=23.83 Aligned_cols=57 Identities=11% Similarity=0.110 Sum_probs=41.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHhc
Q 023765 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~l 167 (277)
..++..+...++..+|++.++. |+ .|..|..+.-+.+ ..|+|.+....+|.+....+
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 4555556778999999988886 56 6777776665544 37999998888887765543
No 413
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=57.64 E-value=26 Score=25.16 Aligned_cols=53 Identities=11% Similarity=0.125 Sum_probs=38.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHH
Q 023765 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (277)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (277)
|+--+...++..||.+.++. || .|..|+.+......--|||.+....+|....
T Consensus 90 ~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvA 144 (150)
T 4a17_R 90 MVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLA 144 (150)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHH
Confidence 44445678999999998886 56 7888877654444556999998777776643
No 414
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=56.48 E-value=28 Score=25.16 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.2
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
|+-.+...++-.||.+.++. || .|..|+.+......--|||.+....+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 44455779999999999985 66 88888776544345569999988777655544
No 415
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=55.48 E-value=26 Score=24.88 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=38.7
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHH
Q 023765 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (277)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~ 62 (277)
|+--+...++..||.+.++. || .|..|+.+......--|||.+....+|....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 44445678999999998886 56 7888877654444556999998777766543
No 416
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=53.42 E-value=23 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=39.3
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 10 YVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 10 ~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
|+--+...++..||.+.++. || .|..|+.+......--|||.+....+|.....
T Consensus 92 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 92 LVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34445678899999988885 56 78888776654445569999998877776543
No 417
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=52.15 E-value=57 Score=22.74 Aligned_cols=49 Identities=6% Similarity=0.173 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCee
Q 023765 123 WQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEF 172 (277)
Q Consensus 123 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g~~~ 172 (277)
...+.+.+.+.| .|..+..........+.+.+++.+.|.++|.. .|..+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 345666666766 46454433222223556778888888888765 45544
No 418
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=50.67 E-value=47 Score=21.35 Aligned_cols=55 Identities=15% Similarity=0.328 Sum_probs=45.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc
Q 023765 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l 167 (277)
.+-+.|-|+|..+-..++.-...-.|--.+|....+ .|.|.|.+.++..-|+.+|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidg----qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDG----QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSS----CEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecC----eeEEEecCChHHHHHHHHH
Confidence 567889999999988888777778887777776655 5999999999998888776
No 419
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=48.78 E-value=46 Score=23.93 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHh
Q 023765 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 166 (277)
+.++..+...++..+|++.++. |+ .|..|..+.-+.+ ..|+|.+....+|.+....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 4555556778888888888875 56 6777776655444 3799999988888776543
No 420
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=46.15 E-value=32 Score=23.10 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=28.0
Q ss_pred CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 023765 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (277)
Q Consensus 32 ~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~ 69 (277)
.|..+..+ ...+||.|||=..+.++..|+..+.+..
T Consensus 40 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAP--EHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEEC--TTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEec--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 46666554 3469999999999999999998776643
No 421
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.07 E-value=11 Score=22.88 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.6
Q ss_pred CcEEEEEEcChH
Q 023765 45 PGYAFLEFEDYR 56 (277)
Q Consensus 45 ~g~afV~f~~~~ 56 (277)
+..|||.|.+..
T Consensus 37 ~~~ClV~FeD~s 48 (68)
T 2e5p_A 37 REVCLVQFEDDS 48 (68)
T ss_dssp TTEEEEEETTTE
T ss_pred CcEEEEEEccCC
Confidence 679999998643
No 422
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=42.40 E-value=12 Score=23.31 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.6
Q ss_pred CcEEEEEEcChH
Q 023765 45 PGYAFLEFEDYR 56 (277)
Q Consensus 45 ~g~afV~f~~~~ 56 (277)
+..|||.|.+..
T Consensus 54 ~e~ClV~F~D~S 65 (79)
T 2m0o_A 54 REVCLVQFEDDS 65 (79)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 678999998654
No 423
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.05 E-value=22 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=25.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
..+.|+|||++++..-|..++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46799999999999999999987 55554433
No 424
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=41.94 E-value=66 Score=20.55 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=39.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHH
Q 023765 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIR 165 (277)
Q Consensus 112 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~ 165 (277)
.++-..+..++..+|++.+++ |+ .|..|....-+.+ ..|+|.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 445556778999999998886 67 6777777665544 379999988777665543
No 425
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=41.91 E-value=68 Score=22.84 Aligned_cols=34 Identities=32% Similarity=0.370 Sum_probs=27.3
Q ss_pred eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 023765 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~ 68 (277)
|..+.++. ...||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 66666653 36899999999999999999888874
No 426
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=41.90 E-value=13 Score=22.50 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=9.6
Q ss_pred CCcEEEEEEcCh
Q 023765 44 PPGYAFLEFEDY 55 (277)
Q Consensus 44 ~~g~afV~f~~~ 55 (277)
..+.|+|.|.+.
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 378999999864
No 427
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=41.83 E-value=96 Score=22.37 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=40.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHh
Q 023765 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fv~f~~~~~a~~a~~~ 166 (277)
..++..+...++..+|++.++. |+ .|..|+.+.-..+ ..|+|.+....+|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4555566788999999988886 66 6777776665444 3799999888776665543
No 428
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=39.40 E-value=87 Score=21.16 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=19.9
Q ss_pred CCcEEEEEEcChH-----HHHHHHHhcCC
Q 023765 44 PPGYAFLEFEDYR-----DAEDAIRGRDG 67 (277)
Q Consensus 44 ~~g~afV~f~~~~-----~a~~a~~~l~~ 67 (277)
..||.||++.-.+ ++...+....|
T Consensus 61 fPGYVFV~~~~~~~~~~~~~~~~vr~t~g 89 (119)
T 1nz8_A 61 FPGYLFIQMDLGDEEEPNEAWEVVRGTPG 89 (119)
T ss_dssp STTEEEEEECCCSSSSCCHHHHHHHHSTT
T ss_pred CCCEEEEEeeccccccchhHHHHHHcCCC
Confidence 6799999998877 77788887766
No 429
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=38.19 E-value=18 Score=16.59 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=10.5
Q ss_pred CHHHHHHHhhccC
Q 023765 19 RMREVEDLFYKYG 31 (277)
Q Consensus 19 t~~~l~~~F~~~G 31 (277)
...+++.+|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 4568889999987
No 430
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.50 E-value=13 Score=29.84 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=25.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
...+.|+|||+.++..-|..+++....+..+.+
T Consensus 114 ~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 114 PSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred CceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 346899999999999999999986545555444
No 431
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=35.01 E-value=24 Score=23.18 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=15.7
Q ss_pred EcCCCCCCCHHHHHHHh-hccCC
Q 023765 11 VGNLPGDTRMREVEDLF-YKYGP 32 (277)
Q Consensus 11 V~nL~~~~t~~~l~~~F-~~~G~ 32 (277)
|.+|.+.+|..||...+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 45778899999988854 44454
No 432
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=34.67 E-value=72 Score=18.82 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l 65 (277)
..++.|.++.-.--...|.+.+.. ..|..+.+... .+-+.|+|.+.++...++..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 357889999888888999999998 77888888532 456778887566666677643
No 433
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=34.40 E-value=58 Score=25.26 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=41.2
Q ss_pred CCeEEEcCCCCCCC--HHHHHHHhh-----ccCCe---eEEEe-----ec----CC-CCCcEEEEEEcCh---HHHHHHH
Q 023765 6 SRTLYVGNLPGDTR--MREVEDLFY-----KYGPI---VDIDL-----KI----PP-RPPGYAFLEFEDY---RDAEDAI 62 (277)
Q Consensus 6 ~~~l~V~nL~~~~t--~~~l~~~F~-----~~G~v---~~v~~-----~~----~~-~~~g~afV~f~~~---~~a~~a~ 62 (277)
-+.|.|-+||.... +.-+..+|. .|..+ .++.| .. .+ .......|.|... |-...|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999999876 433444442 23222 22222 10 11 1234566666654 4555555
Q ss_pred HhcCCcccCCceEEEEE
Q 023765 63 RGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 63 ~~l~~~~~~g~~i~v~~ 79 (277)
.......+.|.+|.+..
T Consensus 132 R~k~~vtykG~pIrlsa 148 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTV 148 (233)
T ss_dssp HTTSCEEETTEEEEEEE
T ss_pred HHhcccccCCCceEEeC
Confidence 55667888999988755
No 434
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=32.44 E-value=43 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=22.4
Q ss_pred CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEE
Q 023765 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFL 50 (277)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV 50 (277)
.+++.|.++|+.+|+|..-.|. -||||-
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF-----Gg~~l~ 31 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF-----GGFGLF 31 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET-----TEEEEE
T ss_pred hHHHHHHHHHhccCCceEeecc-----CcEEEE
Confidence 4677899999999999998886 566654
No 435
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=31.21 E-value=26 Score=20.58 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=9.4
Q ss_pred CcEEEEEEcChH
Q 023765 45 PGYAFLEFEDYR 56 (277)
Q Consensus 45 ~g~afV~f~~~~ 56 (277)
...|+|.|.+..
T Consensus 31 ~~~clV~F~D~s 42 (58)
T 4hcz_A 31 REVCLVQFEDDS 42 (58)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEEcCCC
Confidence 568999998654
No 436
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=30.96 E-value=52 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 023765 8 TLYVGNLPGDTRMREVEDLFYK 29 (277)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~ 29 (277)
.+.|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999998875
No 437
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=30.68 E-value=54 Score=24.80 Aligned_cols=36 Identities=17% Similarity=0.141 Sum_probs=28.1
Q ss_pred eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023765 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 33 v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~ 70 (277)
|..+... ...+||.|||=..+.++..|++.+.+...
T Consensus 139 I~Si~~~--d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 139 ILSIFQR--DNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp CCEEECC--TTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred EEEEEec--CCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 5555443 34689999999999999999998887633
No 438
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.98 E-value=1.5e+02 Score=21.84 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=32.6
Q ss_pred ceEEEeCCCC-C--------CCHHHHHHHH--HhcCCeeEEEEEecCCC--cEEEEEEechh
Q 023765 110 YRVLVTGLPS-S--------ASWQDLKDHM--RRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (277)
Q Consensus 110 ~~l~v~~l~~-~--------~~~~~l~~~f--~~~g~v~~~~~~~~~~~--~~~fv~f~~~~ 158 (277)
+.+.|-|+|. . ...++|.+.| ..|.++. |....+..+ +++.|+|...-
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw 73 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDW 73 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCCh
Confidence 4677777776 1 3457899977 7888766 444444443 58999997644
No 439
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=29.04 E-value=36 Score=26.74 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=22.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDI 36 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v 36 (277)
..+.|+|||+.++...|..++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358999999999999998888754334333
No 440
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=28.99 E-value=1.4e+02 Score=20.57 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC
Q 023765 123 WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (277)
Q Consensus 123 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~fv~f~~~~~a~~a~~~l~g 169 (277)
.+++.+.+..+.+|..|....+....++.|.+.+.++....+..+.+
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~tG~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEESSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeeeCCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 67788888999999999988877666888999999999998887765
No 441
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=28.98 E-value=18 Score=22.53 Aligned_cols=38 Identities=11% Similarity=-0.008 Sum_probs=21.6
Q ss_pred CcEEEEEEcChHHHHHHHHhcC-C----cccCCceEEEEEccC
Q 023765 45 PGYAFLEFEDYRDAEDAIRGRD-G----YNFDGYRLRVELAHG 82 (277)
Q Consensus 45 ~g~afV~f~~~~~a~~a~~~l~-~----~~~~g~~i~v~~a~~ 82 (277)
+||+||+-.+-+++-.=+..|. + ..-.|..+.......
T Consensus 12 KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~g 54 (74)
T 2kcm_A 12 KKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPT 54 (74)
T ss_dssp TTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEECT
T ss_pred CCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEEC
Confidence 8999998765433322223333 2 233577777776554
No 442
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=28.83 E-value=1.3e+02 Score=19.89 Aligned_cols=65 Identities=14% Similarity=0.253 Sum_probs=44.4
Q ss_pred CCCCCCCHHHHHHHh-hccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 13 NLPGDTRMREVEDLF-YKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 13 nL~~~~t~~~l~~~F-~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
.++..+.-++|..-. ..||.-.++.... .-..|-..+++|.++|++.|+-. ..-+.|.|-+..+.
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n-----~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTN-----NELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECS-----SSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEec-----ceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 456778888887655 4689877776652 23578889999999999977643 33345555554443
No 443
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.39 E-value=32 Score=26.96 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=23.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEE
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDI 36 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v 36 (277)
..+.|+|||++++..-|..+++....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 458999999999999999999865444433
No 444
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.84 E-value=83 Score=20.54 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=42.5
Q ss_pred cCCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 12 GNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 12 ~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
--++..+.-++|+.-.. .||.-.++.+..+ --.|-..++++.++|++.|+- ...-+.|.|-.
T Consensus 34 i~f~RPv~f~el~~kv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLDr-s~~~kSLrIlL 96 (100)
T 2npt_B 34 LQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-----ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILL 96 (100)
T ss_dssp EEECSSCCHHHHHHHHHHHHTSCEEEEEEET-----TEEEECCCHHHHHHHHHHHHH-CSSCCSEEEEE
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEecccHHHHHHHHHHhcc-CccccceEEEE
Confidence 34567788889887665 6898888777632 256888999999999996653 23333444433
No 445
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=27.80 E-value=75 Score=21.03 Aligned_cols=61 Identities=18% Similarity=0.186 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023765 13 NLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 79 (277)
-++..+.-++|++-.. .||.-.++.+..+ --.|-..++++.++|++.|+- ...-+.|.|-.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~IPL~~Q~DLDkAvelLDr-s~~mkSLRIlL 107 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILDR-SSSMKSLRILL 107 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS-----SCEEECCSHHHHHHHHHHHHH-CSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eEEEecccHHHHHHHHHHhcc-CccccceEEEE
Confidence 4566788888887665 6898888777632 246788899999999997653 22333444433
No 446
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.34 E-value=16 Score=28.81 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=24.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023765 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 8 ~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
...|+|||+.++...|..+++..+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987655555444
No 447
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=26.96 E-value=26 Score=21.78 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=8.1
Q ss_pred CcEEEEEEcC
Q 023765 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~afV~f~~ 54 (277)
+||+||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998754
No 448
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=26.91 E-value=1e+02 Score=26.27 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=40.1
Q ss_pred EEEcCCCCCC----CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce
Q 023765 9 LYVGNLPGDT----RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (277)
Q Consensus 9 l~V~nL~~~~----t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (277)
-+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|..++. -++..|.++.
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4788876432 235677888899999888773 344677789999998886 3444454443
No 449
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=26.84 E-value=1.1e+02 Score=22.82 Aligned_cols=44 Identities=9% Similarity=-0.052 Sum_probs=28.2
Q ss_pred EEcCCCCCCCHHHH--------HHHhhccCCeeEEEeecCCCCCcEEEEEEc
Q 023765 10 YVGNLPGDTRMREV--------EDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (277)
Q Consensus 10 ~V~nL~~~~t~~~l--------~~~F~~~G~v~~v~~~~~~~~~g~afV~f~ 53 (277)
++--||..++.++- +++|..+|-|.++.+..++.....|-|-|.
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t 125 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMIS 125 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEEC
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEe
Confidence 55678999988774 445566677777777653333445555554
No 450
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=26.68 E-value=43 Score=30.53 Aligned_cols=53 Identities=17% Similarity=0.348 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHhh----ccCCeeEEEeecCC--CCCcEEEEEEcChHHHHHHHHhc
Q 023765 13 NLPGDTRMREVEDLFY----KYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 13 nL~~~~t~~~l~~~F~----~~G~v~~v~~~~~~--~~~g~afV~f~~~~~a~~a~~~l 65 (277)
..+.+.+--||..+|- .+|-|..+.|...+ ....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 4455566668888883 67899999995533 33567889999999999988655
No 451
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=25.54 E-value=17 Score=24.11 Aligned_cols=72 Identities=15% Similarity=0.225 Sum_probs=40.0
Q ss_pred CeEEEcCCCCCCCHHH--HHHHhh--------ccC-----CeeEEEeec----CC-CCCcEEEEEEcChH---HHHHHHH
Q 023765 7 RTLYVGNLPGDTRMRE--VEDLFY--------KYG-----PIVDIDLKI----PP-RPPGYAFLEFEDYR---DAEDAIR 63 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~--l~~~F~--------~~G-----~v~~v~~~~----~~-~~~g~afV~f~~~~---~a~~a~~ 63 (277)
+.|.|-+||....+.. +..||. ..+ .|..+.=.. .+ .......|.|.... -...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6789999998743222 333332 222 233333311 11 12346677776544 4555555
Q ss_pred hcCCcccCCceEEEE
Q 023765 64 GRDGYNFDGYRLRVE 78 (277)
Q Consensus 64 ~l~~~~~~g~~i~v~ 78 (277)
......+.|.+|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 566688899998875
No 452
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=24.47 E-value=29 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.0
Q ss_pred CHHHHHHHhhccCCeeE
Q 023765 19 RMREVEDLFYKYGPIVD 35 (277)
Q Consensus 19 t~~~l~~~F~~~G~v~~ 35 (277)
|--||++++.+||.|..
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 56689999999998765
No 453
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=23.91 E-value=54 Score=20.74 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=17.7
Q ss_pred cCCCCCCCHHHHHHHhhccC
Q 023765 12 GNLPGDTRMREVEDLFYKYG 31 (277)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~~G 31 (277)
|.|+..+|+++|.+++++..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999999863
No 454
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=23.27 E-value=33 Score=20.70 Aligned_cols=9 Identities=22% Similarity=0.748 Sum_probs=7.5
Q ss_pred CcEEEEEEc
Q 023765 45 PGYAFLEFE 53 (277)
Q Consensus 45 ~g~afV~f~ 53 (277)
+||+||+=.
T Consensus 13 kGfGFI~~~ 21 (67)
T 3cam_A 13 KGFGFITPD 21 (67)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEecC
Confidence 899999854
No 455
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=23.21 E-value=32 Score=22.28 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=7.3
Q ss_pred CcEEEEEEc
Q 023765 45 PGYAFLEFE 53 (277)
Q Consensus 45 ~g~afV~f~ 53 (277)
+||+||+-.
T Consensus 20 KGfGFI~~~ 28 (90)
T 3ulj_A 20 MGFGFISMT 28 (90)
T ss_dssp TTEEEEEEE
T ss_pred CCeEEeEec
Confidence 899999753
No 456
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.87 E-value=34 Score=20.52 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=8.0
Q ss_pred CcEEEEEEcC
Q 023765 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~afV~f~~ 54 (277)
+||+||+-.+
T Consensus 13 kGfGFI~~~~ 22 (66)
T 1c9o_A 13 KGYGFIEVEG 22 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEecCC
Confidence 8999998653
No 457
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=22.82 E-value=64 Score=27.33 Aligned_cols=48 Identities=15% Similarity=0.229 Sum_probs=31.6
Q ss_pred EEcCCCC---CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 10 YVGNLPG---DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 10 ~V~nL~~---~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
+||||.. .-....+.++..+||+|..+.+- +.-+|...+++.+..++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 4566542 22344577888999999888763 223455678888887764
No 458
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=22.51 E-value=1.2e+02 Score=17.31 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=38.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcC---hHHHHHHHH
Q 023765 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFED---YRDAEDAIR 63 (277)
Q Consensus 7 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~afV~f~~---~~~a~~a~~ 63 (277)
.++.|.++.-..-...|...+....-|..+.+... .+-+.|.|.. .++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46788888777778889999998877888887543 4567888843 334444554
No 459
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=22.14 E-value=36 Score=20.96 Aligned_cols=10 Identities=50% Similarity=0.939 Sum_probs=7.9
Q ss_pred CcEEEEEEcC
Q 023765 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~afV~f~~ 54 (277)
+||+||+-.+
T Consensus 13 kGfGFI~~~~ 22 (73)
T 3a0j_A 13 KGYGFIEREG 22 (73)
T ss_dssp TTEEEEECTT
T ss_pred CCEEEEecCC
Confidence 8999997653
No 460
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=21.90 E-value=76 Score=22.24 Aligned_cols=45 Identities=4% Similarity=0.032 Sum_probs=30.4
Q ss_pred EcCCCCCCCHHHHHHHhh-ccC--CeeEEEe-ec-----------C-CCCCcEEEEEEcCh
Q 023765 11 VGNLPGDTRMREVEDLFY-KYG--PIVDIDL-KI-----------P-PRPPGYAFLEFEDY 55 (277)
Q Consensus 11 V~nL~~~~t~~~l~~~F~-~~G--~v~~v~~-~~-----------~-~~~~g~afV~f~~~ 55 (277)
|-++..-++++++.+++. .++ +|..+.+ +. + ....+|.|+.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 666777899999999995 444 6677666 11 1 23356777888653
No 461
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=21.07 E-value=2.5e+02 Score=20.71 Aligned_cols=49 Identities=6% Similarity=-0.028 Sum_probs=32.9
Q ss_pred CceEEEeCCCCCCCHHH--------HHHHHHhcCCeeEEEEEecCCC-cEEEEEEech
Q 023765 109 DYRVLVTGLPSSASWQD--------LKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSY 157 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~--------l~~~f~~~g~v~~~~~~~~~~~-~~~fv~f~~~ 157 (277)
...=++-.||..++.++ +++.|..+|.+..+.|..+... .-|.|.|.+.
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t~R 127 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMISER 127 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEECCB
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEeec
Confidence 34566777999998654 4556667888888888764333 3677777553
No 462
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=20.99 E-value=81 Score=20.13 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc
Q 023765 4 RSSRTLYVGNLPGDTRMREVEDLFYKY 30 (277)
Q Consensus 4 ~~~~~l~V~nL~~~~t~~~l~~~F~~~ 30 (277)
+...+|.|.+.+.+++.++..+++..|
T Consensus 17 NtPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 17 NTPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCCeEEEeecCCccCCHHHHHHHHHHH
Confidence 456788999999999999999999887
No 463
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.83 E-value=40 Score=20.23 Aligned_cols=10 Identities=30% Similarity=0.870 Sum_probs=8.2
Q ss_pred CcEEEEEEcC
Q 023765 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~afV~f~~ 54 (277)
+||+||+-.+
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998654
No 464
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=20.65 E-value=72 Score=19.90 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=30.2
Q ss_pred CCHHHHHHHhhccCC-eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce
Q 023765 18 TRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (277)
Q Consensus 18 ~t~~~l~~~F~~~G~-v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 74 (277)
-|+++|+.+++.|-. -..+ -.+|...+.+..++|.+..+.+.|+-+.
T Consensus 33 ktedelkkyleefrkesqni----------kvlilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNI----------KVLILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSE----------EEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred ccHHHHHHHHHHHHhhccCe----------EEEEEEcChHHHHHHHHHHHhhceeeee
Confidence 488999998888742 1112 2345566778888888766666655443
No 465
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=20.53 E-value=26 Score=26.09 Aligned_cols=55 Identities=9% Similarity=0.200 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023765 9 LYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 9 l~V~nL~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~ 63 (277)
.|+-.+...++..||++.++. || .|..|+.+.......-|||.+....+|.....
T Consensus 133 kyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~gg~KKAyVtLaeG~~AID~an 189 (198)
T 3bbo_V 133 SLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPDGTKKAYIMLNKEYNASELAK 189 (198)
T ss_dssp EECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETTTEEECCEEECTTTCTTTHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCeEEEEEEeCCCCchHHHHH
Confidence 455566789999999999986 56 66666554322223458899887766544433
No 466
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.27 E-value=75 Score=16.62 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=13.1
Q ss_pred CCCCCHHHHHHHhhcc
Q 023765 15 PGDTRMREVEDLFYKY 30 (277)
Q Consensus 15 ~~~~t~~~l~~~F~~~ 30 (277)
..+++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 3468999999999865
No 467
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=20.07 E-value=1.9e+02 Score=25.46 Aligned_cols=94 Identities=11% Similarity=0.174 Sum_probs=48.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc---CCe---eEEEeecCCCCCcEEE-EEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023765 6 SRTLYVGNLPGDTRMREVEDLFYKY---GPI---VDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 6 ~~~l~V~nL~~~~t~~~l~~~F~~~---G~v---~~v~~~~~~~~~g~af-V~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 78 (277)
.++|.|+-||+.++.+.|.+..... +.| .++.=..+ -.|.-| |++.....++..+..|-. -..|+..
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd--~~gvrivIelk~~~~~e~vl~~L~k----~t~Lq~s 348 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETD--RTGLRIAIELKKDVNSESIKNYLYK----NSDLQIS 348 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCB--TTBCCEEEEC------CHHHHHHTT----SSTTEEE
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCC--CCceEEEEEECCCcCHHHHHHHHHH----hcCceee
Confidence 3689999999999998887655432 333 33322212 134444 456555555555543322 2234444
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHh
Q 023765 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR 132 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 132 (277)
+.. +..+++.+.|...+..+|.+.|-.
T Consensus 349 ~~~---------------------------Nm~al~~g~p~~~~l~~iL~~f~~ 375 (514)
T 2inr_A 349 YNF---------------------------NMVAISDGRPKLMGIRQIIDSYLN 375 (514)
T ss_dssp EEE---------------------------ECEEEETTEEEECCHHHHHHHHHH
T ss_pred eee---------------------------eEEEeeCCEEEECCHHHHHHHHHH
Confidence 432 224557777777776666665554
No 468
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.04 E-value=1.8e+02 Score=18.64 Aligned_cols=66 Identities=17% Similarity=0.137 Sum_probs=46.4
Q ss_pred cCCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023765 12 GNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 12 ~nL~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~i~v~~a~~~ 83 (277)
--++..+.-++|.+-.. .||.-.++.+..+ --.|-..++++.++|++.|+- ...-+.|.|-...+.
T Consensus 18 i~f~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 18 IAFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQD 84 (94)
T ss_dssp EEECSSCCHHHHHHHHHHHHCSSEEEEEECS-----SCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEECS
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcCC
Confidence 34567788889887665 6898888877632 246888999999999996653 344456666665543
Done!