Query 023767
Match_columns 277
No_of_seqs 281 out of 2576
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:30:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.2E-32 2.6E-37 232.9 21.0 162 4-187 105-273 (346)
2 KOG0105 Alternative splicing f 100.0 1.7E-29 3.8E-34 186.0 21.6 187 1-190 1-193 (241)
3 TIGR01645 half-pint poly-U bin 100.0 1.3E-29 2.9E-34 225.1 21.4 170 5-187 106-282 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-29 3.1E-34 218.4 20.8 161 5-187 2-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 9.6E-29 2.1E-33 220.3 22.0 171 3-186 86-263 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-27 3.3E-32 205.8 24.3 180 5-188 88-348 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.8E-28 1.3E-32 215.2 21.6 170 5-187 1-172 (481)
8 KOG0148 Apoptosis-promoting RN 100.0 5.6E-28 1.2E-32 188.2 14.5 169 8-182 64-235 (321)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.6E-27 1.9E-31 207.7 22.6 182 4-187 273-478 (481)
10 KOG0109 RNA-binding protein LA 100.0 3.1E-28 6.8E-33 191.4 11.5 145 7-182 3-147 (346)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.5E-27 7.5E-32 215.0 20.1 156 8-185 2-163 (562)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-26 2.3E-31 206.4 21.1 176 6-189 58-307 (578)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.8E-26 3.9E-31 208.4 22.6 176 3-186 172-372 (509)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.1E-26 6.8E-31 206.9 22.1 179 4-186 293-499 (509)
15 KOG0131 Splicing factor 3b, su 99.9 2E-26 4.3E-31 169.7 13.2 160 4-182 7-174 (203)
16 KOG0144 RNA-binding protein CU 99.9 1.6E-26 3.4E-31 190.8 13.2 166 5-191 33-208 (510)
17 KOG0117 Heterogeneous nuclear 99.9 7.8E-26 1.7E-30 187.5 17.1 169 7-179 84-325 (506)
18 TIGR01628 PABP-1234 polyadenyl 99.9 1.7E-25 3.7E-30 204.0 20.6 177 5-187 177-362 (562)
19 TIGR01622 SF-CC1 splicing fact 99.9 4.6E-25 9.9E-30 196.7 21.6 174 6-179 186-442 (457)
20 KOG0145 RNA-binding protein EL 99.9 9.5E-26 2.1E-30 174.9 14.0 162 4-187 39-207 (360)
21 KOG0127 Nucleolar protein fibr 99.9 5.6E-25 1.2E-29 186.5 16.2 178 6-183 5-194 (678)
22 KOG0145 RNA-binding protein EL 99.9 4.2E-24 9.1E-29 165.8 15.5 170 6-175 127-348 (360)
23 KOG0127 Nucleolar protein fibr 99.9 3.3E-23 7.1E-28 175.9 18.7 178 6-183 117-376 (678)
24 KOG0106 Alternative splicing f 99.9 7.6E-24 1.6E-28 163.9 11.5 160 7-176 2-162 (216)
25 KOG0124 Polypyrimidine tract-b 99.9 1.4E-23 2.9E-28 170.3 8.2 165 7-184 114-285 (544)
26 KOG0107 Alternative splicing f 99.9 1.5E-21 3.2E-26 143.2 16.7 75 109-188 10-84 (195)
27 KOG4676 Splicing factor, argin 99.9 1.5E-23 3.3E-28 171.1 6.5 169 3-173 4-214 (479)
28 KOG0123 Polyadenylate-binding 99.9 1.2E-21 2.6E-26 166.9 16.9 147 7-186 2-150 (369)
29 KOG0110 RNA-binding protein (R 99.9 1.1E-21 2.4E-26 171.6 13.7 159 7-176 516-684 (725)
30 KOG0107 Alternative splicing f 99.9 7.6E-21 1.6E-25 139.4 15.3 79 5-85 9-87 (195)
31 KOG4206 Spliceosomal protein s 99.9 2.5E-20 5.5E-25 142.9 16.7 172 1-173 4-209 (221)
32 KOG4207 Predicted splicing fac 99.9 1.7E-20 3.7E-25 141.1 13.9 75 103-177 7-85 (256)
33 KOG4207 Predicted splicing fac 99.9 1.9E-20 4.1E-25 140.9 13.8 82 4-85 11-95 (256)
34 TIGR01645 half-pint poly-U bin 99.8 2.8E-19 6.1E-24 159.5 22.4 78 5-82 203-283 (612)
35 KOG0147 Transcriptional coacti 99.8 5.6E-20 1.2E-24 156.9 13.0 174 8-182 280-525 (549)
36 KOG0123 Polyadenylate-binding 99.8 1.2E-19 2.5E-24 154.8 14.9 167 4-187 74-244 (369)
37 KOG1457 RNA binding protein (c 99.8 2E-19 4.4E-24 136.9 14.5 170 5-174 33-275 (284)
38 KOG0147 Transcriptional coacti 99.8 6.3E-21 1.4E-25 162.6 6.4 172 3-181 176-354 (549)
39 KOG4205 RNA-binding protein mu 99.8 5.3E-20 1.1E-24 151.6 11.5 164 2-181 2-172 (311)
40 KOG0148 Apoptosis-promoting RN 99.8 1.6E-19 3.4E-24 141.2 10.7 135 1-186 1-139 (321)
41 KOG0144 RNA-binding protein CU 99.8 4.7E-19 1E-23 146.9 13.9 181 5-185 123-504 (510)
42 PLN03134 glycine-rich RNA-bind 99.8 6.6E-19 1.4E-23 131.2 11.6 83 4-86 32-117 (144)
43 KOG1548 Transcription elongati 99.8 2.7E-17 5.8E-22 133.0 17.3 178 4-181 132-348 (382)
44 KOG0121 Nuclear cap-binding pr 99.8 7.9E-19 1.7E-23 122.1 7.1 79 4-82 34-115 (153)
45 KOG0146 RNA-binding protein ET 99.8 5E-18 1.1E-22 132.7 11.7 171 5-175 18-355 (371)
46 KOG0113 U1 small nuclear ribon 99.8 5.4E-17 1.2E-21 128.8 15.3 83 3-85 98-183 (335)
47 KOG0110 RNA-binding protein (R 99.7 6.5E-17 1.4E-21 142.0 14.4 177 4-183 383-596 (725)
48 PLN03120 nucleic acid binding 99.7 5.9E-17 1.3E-21 129.0 11.3 80 5-85 3-82 (260)
49 KOG1190 Polypyrimidine tract-b 99.7 6E-16 1.3E-20 127.8 16.8 176 6-186 297-488 (492)
50 PF00076 RRM_1: RNA recognitio 99.7 3E-17 6.5E-22 107.7 7.1 68 9-76 1-70 (70)
51 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-16 2.5E-21 142.8 12.2 128 5-137 232-369 (578)
52 KOG4211 Splicing factor hnRNP- 99.7 6E-16 1.3E-20 130.8 15.8 164 5-184 9-177 (510)
53 KOG4212 RNA-binding protein hn 99.7 1.8E-15 3.8E-20 126.1 18.1 170 5-174 43-283 (608)
54 KOG0124 Polypyrimidine tract-b 99.7 2.4E-15 5.2E-20 122.7 16.4 78 6-83 210-290 (544)
55 KOG0126 Predicted RNA-binding 99.7 7.5E-18 1.6E-22 124.4 0.8 83 4-86 33-118 (219)
56 PLN03121 nucleic acid binding 99.7 6.2E-16 1.3E-20 121.2 11.2 80 5-85 4-83 (243)
57 KOG0114 Predicted RNA-binding 99.7 1E-15 2.2E-20 102.7 8.8 80 5-84 17-96 (124)
58 KOG0120 Splicing factor U2AF, 99.7 1.2E-15 2.6E-20 132.0 11.8 171 5-175 288-482 (500)
59 COG0724 RNA-binding proteins ( 99.6 5.7E-15 1.2E-19 123.1 14.8 141 6-146 115-262 (306)
60 KOG1190 Polypyrimidine tract-b 99.6 1.1E-15 2.4E-20 126.2 10.0 176 3-181 25-222 (492)
61 KOG0122 Translation initiation 99.6 1.5E-15 3.2E-20 117.6 9.3 80 4-83 187-269 (270)
62 PF14259 RRM_6: RNA recognitio 99.6 1.3E-15 2.8E-20 99.8 7.2 68 9-76 1-70 (70)
63 TIGR01659 sex-lethal sex-letha 99.6 4.2E-15 9.2E-20 126.3 10.7 81 5-85 192-277 (346)
64 KOG1456 Heterogeneous nuclear 99.6 7.7E-14 1.7E-18 114.2 17.1 176 4-181 285-481 (494)
65 KOG0149 Predicted RNA-binding 99.6 1.8E-15 3.9E-20 116.6 7.2 76 6-82 12-90 (247)
66 KOG0130 RNA-binding protein RB 99.6 2.5E-15 5.5E-20 105.7 6.6 79 7-85 73-154 (170)
67 KOG0125 Ataxin 2-binding prote 99.6 3.3E-15 7E-20 120.3 7.8 80 4-83 94-174 (376)
68 PLN03134 glycine-rich RNA-bind 99.6 7.8E-14 1.7E-18 104.0 14.7 80 106-189 31-114 (144)
69 KOG0113 U1 small nuclear ribon 99.6 1.3E-13 2.7E-18 109.9 16.1 75 107-185 99-177 (335)
70 PLN03213 repressor of silencin 99.6 9.9E-15 2.2E-19 123.5 9.7 79 3-82 7-87 (759)
71 smart00362 RRM_2 RNA recogniti 99.6 2.1E-14 4.6E-19 94.0 9.1 70 8-77 1-71 (72)
72 KOG0111 Cyclophilin-type pepti 99.5 1.3E-14 2.9E-19 110.6 5.4 84 4-87 8-94 (298)
73 cd00590 RRM RRM (RNA recogniti 99.5 2.4E-13 5.2E-18 89.5 9.3 72 8-79 1-74 (74)
74 PF00076 RRM_1: RNA recognitio 99.5 2E-13 4.2E-18 89.3 8.7 64 112-175 1-67 (70)
75 smart00360 RRM RNA recognition 99.5 1.9E-13 4.1E-18 89.1 8.1 68 11-78 1-71 (71)
76 PF13893 RRM_5: RNA recognitio 99.5 2.4E-13 5.1E-18 84.8 7.8 56 23-80 1-56 (56)
77 KOG0108 mRNA cleavage and poly 99.4 4.8E-13 1E-17 115.4 9.2 79 7-85 19-100 (435)
78 KOG0117 Heterogeneous nuclear 99.4 3.3E-13 7.1E-18 113.0 7.3 77 5-86 258-334 (506)
79 KOG1456 Heterogeneous nuclear 99.4 5.3E-12 1.1E-16 103.6 14.0 167 4-189 29-199 (494)
80 KOG0130 RNA-binding protein RB 99.4 8.3E-13 1.8E-17 93.1 7.9 76 107-186 70-149 (170)
81 KOG0129 Predicted RNA-binding 99.4 6.9E-12 1.5E-16 107.2 14.4 163 5-173 258-443 (520)
82 KOG4212 RNA-binding protein hn 99.4 1.9E-11 4.2E-16 102.3 16.2 74 6-79 215-290 (608)
83 KOG0415 Predicted peptidyl pro 99.4 4.6E-13 9.9E-18 109.0 5.9 79 4-82 237-318 (479)
84 PLN03120 nucleic acid binding 99.4 4.2E-12 9.2E-17 101.4 10.8 73 109-186 4-77 (260)
85 KOG0109 RNA-binding protein LA 99.4 8.7E-13 1.9E-17 104.8 6.6 77 3-84 75-151 (346)
86 KOG0105 Alternative splicing f 99.4 4.9E-12 1.1E-16 94.2 10.1 78 109-190 6-84 (241)
87 KOG0125 Ataxin 2-binding prote 99.4 1.9E-12 4.2E-17 104.5 8.6 74 105-178 92-167 (376)
88 KOG0120 Splicing factor U2AF, 99.3 5.1E-12 1.1E-16 109.8 10.0 172 4-179 173-363 (500)
89 PF14259 RRM_6: RNA recognitio 99.3 5.5E-12 1.2E-16 82.5 7.5 64 112-175 1-67 (70)
90 KOG0132 RNA polymerase II C-te 99.3 6.1E-12 1.3E-16 112.0 9.3 80 5-87 420-499 (894)
91 KOG1365 RNA-binding protein Fu 99.3 1.1E-11 2.3E-16 102.2 9.5 174 7-185 162-358 (508)
92 smart00361 RRM_1 RNA recogniti 99.3 1E-11 2.2E-16 81.0 7.5 58 20-77 2-69 (70)
93 KOG0121 Nuclear cap-binding pr 99.3 9.2E-12 2E-16 87.1 7.4 77 108-188 35-115 (153)
94 KOG0114 Predicted RNA-binding 99.3 2.8E-11 6E-16 81.5 9.1 79 105-187 14-93 (124)
95 KOG0112 Large RNA-binding prot 99.3 2.2E-12 4.9E-17 116.4 4.9 158 4-187 370-529 (975)
96 KOG0122 Translation initiation 99.3 2.5E-11 5.5E-16 94.4 9.9 79 106-188 186-268 (270)
97 PLN03121 nucleic acid binding 99.3 3.5E-11 7.6E-16 94.7 10.6 74 108-186 4-78 (243)
98 KOG4454 RNA binding protein (R 99.3 9.4E-13 2E-17 100.5 1.6 140 4-173 7-151 (267)
99 PLN03213 repressor of silencin 99.3 2.2E-11 4.8E-16 103.5 9.6 76 109-188 10-87 (759)
100 smart00362 RRM_2 RNA recogniti 99.3 7.7E-11 1.7E-15 76.8 9.4 65 111-175 1-67 (72)
101 KOG0415 Predicted peptidyl pro 99.2 4.7E-11 1E-15 97.5 7.7 76 105-184 235-314 (479)
102 KOG4208 Nucleolar RNA-binding 99.2 7.1E-11 1.5E-15 89.7 7.7 79 5-83 48-130 (214)
103 KOG0149 Predicted RNA-binding 99.1 1.5E-10 3.3E-15 89.7 7.7 77 109-186 12-92 (247)
104 smart00360 RRM RNA recognition 99.1 4.8E-10 1E-14 72.7 8.4 62 114-175 1-66 (71)
105 cd00590 RRM RRM (RNA recogniti 99.1 9.6E-10 2.1E-14 72.0 9.9 65 111-175 1-68 (74)
106 KOG0131 Splicing factor 3b, su 99.1 1.6E-10 3.5E-15 86.0 6.3 78 106-187 6-87 (203)
107 KOG0126 Predicted RNA-binding 99.1 1.6E-11 3.4E-16 91.3 0.2 75 109-187 35-113 (219)
108 KOG4660 Protein Mei2, essentia 99.1 6.9E-11 1.5E-15 102.1 3.9 166 4-174 73-239 (549)
109 KOG0146 RNA-binding protein ET 99.1 2.6E-10 5.6E-15 89.9 5.5 81 4-84 283-366 (371)
110 KOG0533 RRM motif-containing p 99.0 8.9E-10 1.9E-14 87.9 8.3 80 5-84 82-163 (243)
111 PF13893 RRM_5: RNA recognitio 99.0 1.7E-09 3.6E-14 67.2 7.7 54 126-184 1-54 (56)
112 KOG4205 RNA-binding protein mu 99.0 5.4E-10 1.2E-14 92.7 6.3 84 5-89 96-182 (311)
113 KOG0153 Predicted RNA-binding 99.0 1.2E-09 2.6E-14 89.3 7.7 76 4-82 226-302 (377)
114 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.8E-09 3.8E-14 93.6 8.2 82 6-87 405-489 (940)
115 KOG2193 IGF-II mRNA-binding pr 99.0 5.9E-11 1.3E-15 99.0 -0.9 142 7-175 2-147 (584)
116 KOG0111 Cyclophilin-type pepti 98.9 1.2E-09 2.5E-14 83.8 4.9 79 108-190 9-91 (298)
117 KOG4211 Splicing factor hnRNP- 98.9 3.2E-08 6.9E-13 84.6 13.6 167 5-174 102-347 (510)
118 KOG0128 RNA-binding protein SA 98.9 1.1E-10 2.3E-15 105.4 -1.5 134 5-175 666-805 (881)
119 COG0724 RNA-binding proteins ( 98.9 1.1E-08 2.3E-13 85.1 9.9 74 109-186 115-192 (306)
120 KOG4210 Nuclear localization s 98.9 3.9E-09 8.5E-14 87.3 6.5 171 5-190 87-265 (285)
121 KOG0108 mRNA cleavage and poly 98.9 6E-09 1.3E-13 90.3 7.5 76 110-189 19-98 (435)
122 smart00361 RRM_1 RNA recogniti 98.8 2.7E-08 5.8E-13 64.8 8.0 54 123-176 2-66 (70)
123 KOG0116 RasGAP SH3 binding pro 98.8 1.1E-08 2.4E-13 88.1 7.1 75 7-82 289-366 (419)
124 PF04059 RRM_2: RNA recognitio 98.8 4.5E-08 9.8E-13 67.0 8.4 75 7-81 2-85 (97)
125 PF11608 Limkain-b1: Limkain b 98.8 3.6E-08 7.7E-13 64.2 7.4 71 7-84 3-78 (90)
126 KOG4209 Splicing factor RNPS1, 98.8 1.5E-08 3.2E-13 81.1 6.8 81 4-85 99-182 (231)
127 KOG0151 Predicted splicing reg 98.8 2.3E-08 5E-13 88.8 8.0 78 5-82 173-256 (877)
128 KOG4676 Splicing factor, argin 98.7 1.6E-09 3.4E-14 89.8 -0.8 63 7-71 152-214 (479)
129 KOG1365 RNA-binding protein Fu 98.7 3.9E-07 8.5E-12 75.7 12.0 159 3-166 57-225 (508)
130 KOG1457 RNA binding protein (c 98.6 3.4E-08 7.3E-13 76.1 4.1 66 4-70 208-273 (284)
131 KOG4307 RNA binding protein RB 98.6 3.7E-07 7.9E-12 81.3 9.3 174 5-184 310-509 (944)
132 KOG0533 RRM motif-containing p 98.6 3.5E-07 7.7E-12 73.2 8.2 71 108-178 82-155 (243)
133 KOG0106 Alternative splicing f 98.6 1E-07 2.2E-12 74.6 5.0 70 110-187 2-71 (216)
134 KOG4454 RNA binding protein (R 98.5 5.2E-08 1.1E-12 74.9 2.6 77 106-182 6-84 (267)
135 KOG4661 Hsp27-ERE-TATA-binding 98.5 3.5E-07 7.5E-12 79.7 7.4 76 108-187 404-483 (940)
136 KOG0132 RNA polymerase II C-te 98.5 4.2E-07 9.1E-12 81.9 7.4 72 108-181 420-491 (894)
137 KOG0226 RNA-binding proteins [ 98.5 3.6E-07 7.7E-12 72.0 5.9 154 9-176 99-261 (290)
138 KOG4206 Spliceosomal protein s 98.4 1.2E-06 2.6E-11 68.1 8.0 68 109-176 9-81 (221)
139 KOG0153 Predicted RNA-binding 98.4 1.3E-06 2.9E-11 71.8 8.5 79 104-188 223-302 (377)
140 KOG4208 Nucleolar RNA-binding 98.4 1.3E-06 2.8E-11 66.8 7.4 75 107-181 47-126 (214)
141 KOG2202 U2 snRNP splicing fact 98.4 3.9E-07 8.4E-12 72.0 4.2 62 21-82 83-147 (260)
142 KOG0116 RasGAP SH3 binding pro 98.3 5.9E-06 1.3E-10 71.6 10.6 76 109-189 288-367 (419)
143 PF08777 RRM_3: RNA binding mo 98.3 2E-06 4.3E-11 60.4 5.8 70 7-79 2-76 (105)
144 KOG1548 Transcription elongati 98.2 6.7E-06 1.5E-10 67.7 8.6 78 106-187 131-219 (382)
145 KOG4660 Protein Mei2, essentia 98.2 1.8E-06 3.8E-11 75.3 5.2 71 107-178 73-143 (549)
146 KOG3152 TBP-binding protein, a 98.2 9.3E-07 2E-11 69.7 2.8 70 5-74 73-157 (278)
147 KOG0226 RNA-binding proteins [ 98.2 2E-06 4.4E-11 67.8 4.4 75 6-80 190-267 (290)
148 KOG1995 Conserved Zn-finger pr 98.1 2.3E-06 5.1E-11 70.8 4.2 80 5-84 65-155 (351)
149 KOG0151 Predicted splicing reg 98.1 1.2E-05 2.6E-10 72.1 8.4 70 105-174 170-246 (877)
150 COG5175 MOT2 Transcriptional r 98.1 8.7E-06 1.9E-10 66.8 6.9 76 6-81 114-201 (480)
151 PF14605 Nup35_RRM_2: Nup53/35 98.1 1.2E-05 2.6E-10 48.9 5.4 53 6-62 1-53 (53)
152 KOG2416 Acinus (induces apopto 98.1 3.5E-06 7.6E-11 73.9 3.8 76 4-82 442-521 (718)
153 PF08777 RRM_3: RNA binding mo 98.1 9.5E-06 2E-10 56.9 5.3 59 110-170 2-60 (105)
154 KOG4849 mRNA cleavage factor I 98.0 4.9E-06 1.1E-10 68.5 3.9 75 7-81 81-160 (498)
155 PF11608 Limkain-b1: Limkain b 98.0 6.9E-05 1.5E-09 49.1 7.9 68 110-187 3-75 (90)
156 PF04059 RRM_2: RNA recognitio 98.0 8.8E-05 1.9E-09 50.9 8.8 66 110-175 2-73 (97)
157 PF05172 Nup35_RRM: Nup53/35/4 98.0 5.1E-05 1.1E-09 52.4 7.4 75 5-81 5-90 (100)
158 KOG4210 Nuclear localization s 98.0 6.8E-06 1.5E-10 68.2 3.6 81 3-84 181-265 (285)
159 KOG4307 RNA binding protein RB 97.9 4.5E-05 9.7E-10 68.4 7.3 73 7-79 868-943 (944)
160 KOG2314 Translation initiation 97.8 6.3E-05 1.4E-09 65.9 6.7 76 6-81 58-142 (698)
161 KOG4209 Splicing factor RNPS1, 97.8 4.4E-05 9.5E-10 61.3 5.3 71 107-178 99-173 (231)
162 KOG0115 RNA-binding protein p5 97.7 9.6E-05 2.1E-09 58.6 6.3 100 57-183 6-108 (275)
163 KOG1855 Predicted RNA-binding 97.7 4.2E-05 9.2E-10 64.8 3.8 64 5-68 230-309 (484)
164 PF08675 RNA_bind: RNA binding 97.6 0.00033 7.1E-09 45.9 6.8 55 7-67 10-64 (87)
165 PF08952 DUF1866: Domain of un 97.6 0.00034 7.4E-09 51.3 7.2 56 22-83 52-107 (146)
166 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00027 5.8E-09 42.9 5.1 52 110-164 2-53 (53)
167 KOG0129 Predicted RNA-binding 97.5 0.00055 1.2E-08 59.7 8.3 61 3-63 367-431 (520)
168 PF07576 BRAP2: BRCA1-associat 97.5 0.0012 2.5E-08 46.6 8.2 68 4-71 11-80 (110)
169 KOG3152 TBP-binding protein, a 97.4 9.7E-05 2.1E-09 58.6 2.5 67 109-175 74-156 (278)
170 KOG0128 RNA-binding protein SA 97.4 0.00031 6.7E-09 64.6 5.5 79 6-84 736-816 (881)
171 KOG1996 mRNA splicing factor [ 97.3 0.00063 1.4E-08 55.1 6.3 62 20-81 300-365 (378)
172 KOG1995 Conserved Zn-finger pr 97.3 0.00043 9.4E-09 57.7 5.4 70 106-175 63-144 (351)
173 KOG0112 Large RNA-binding prot 97.3 0.00044 9.5E-09 64.0 5.4 81 4-87 453-535 (975)
174 KOG2314 Translation initiation 97.2 0.0013 2.7E-08 58.1 7.0 66 109-174 58-132 (698)
175 PF15023 DUF4523: Protein of u 97.1 0.0018 3.9E-08 47.0 6.2 72 5-81 85-160 (166)
176 COG5175 MOT2 Transcriptional r 97.1 0.0015 3.3E-08 54.0 6.5 74 106-179 111-197 (480)
177 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0021 4.5E-08 44.5 6.2 65 109-175 6-81 (100)
178 KOG1855 Predicted RNA-binding 97.0 0.0012 2.6E-08 56.3 4.8 63 107-169 229-308 (484)
179 KOG1996 mRNA splicing factor [ 96.9 0.0033 7.2E-08 51.0 6.8 55 123-177 300-359 (378)
180 KOG0804 Cytoplasmic Zn-finger 96.9 0.0058 1.3E-07 52.6 8.6 67 5-71 73-141 (493)
181 KOG2202 U2 snRNP splicing fact 96.9 0.00054 1.2E-08 54.6 2.1 58 124-181 83-144 (260)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0014 3E-08 50.7 3.9 82 3-84 4-99 (176)
183 PF08952 DUF1866: Domain of un 96.7 0.0083 1.8E-07 44.2 6.7 53 124-181 51-103 (146)
184 PF08675 RNA_bind: RNA binding 96.5 0.013 2.9E-07 38.5 6.0 56 109-169 9-64 (87)
185 PF10309 DUF2414: Protein of u 96.4 0.032 6.9E-07 34.8 7.0 54 7-65 6-62 (62)
186 PF10309 DUF2414: Protein of u 96.4 0.036 7.9E-07 34.5 7.1 55 109-167 5-62 (62)
187 PF10567 Nab6_mRNP_bdg: RNA-re 96.3 0.13 2.8E-06 42.2 11.7 162 6-168 15-212 (309)
188 KOG2068 MOT2 transcription fac 96.3 0.002 4.2E-08 53.5 1.4 76 7-82 78-162 (327)
189 KOG4285 Mitotic phosphoprotein 96.2 0.019 4.2E-07 47.0 6.9 72 7-83 198-270 (350)
190 KOG2135 Proteins containing th 96.2 0.0032 6.9E-08 54.5 2.5 75 5-83 371-446 (526)
191 KOG2591 c-Mpl binding protein, 96.1 0.0078 1.7E-07 53.2 4.4 71 5-79 174-248 (684)
192 KOG2591 c-Mpl binding protein, 96.0 0.027 5.9E-07 49.9 7.1 56 109-167 175-232 (684)
193 PF04847 Calcipressin: Calcipr 95.9 0.038 8.2E-07 42.9 7.1 63 19-84 8-72 (184)
194 KOG2416 Acinus (induces apopto 95.8 0.0065 1.4E-07 54.1 2.6 67 105-173 440-507 (718)
195 KOG0115 RNA-binding protein p5 95.6 0.013 2.9E-07 46.8 3.6 75 7-81 32-112 (275)
196 PF03880 DbpA: DbpA RNA bindin 95.4 0.09 1.9E-06 34.3 6.4 59 16-80 11-74 (74)
197 KOG2253 U1 snRNP complex, subu 95.2 0.011 2.4E-07 53.4 2.1 71 5-81 39-109 (668)
198 KOG0835 Cyclin L [General func 95.2 0.025 5.5E-07 46.9 4.0 19 45-63 173-191 (367)
199 KOG0835 Cyclin L [General func 95.1 0.042 9.2E-07 45.7 5.0 12 120-131 212-223 (367)
200 KOG2318 Uncharacterized conser 95.0 0.11 2.3E-06 46.6 7.5 79 3-81 171-306 (650)
201 KOG2135 Proteins containing th 94.9 0.053 1.1E-06 47.2 5.2 65 111-178 374-439 (526)
202 KOG2193 IGF-II mRNA-binding pr 94.8 0.0011 2.3E-08 56.5 -5.0 78 6-83 80-157 (584)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.096 2.1E-06 40.5 5.9 69 109-177 7-85 (176)
204 PF07576 BRAP2: BRCA1-associat 94.3 0.55 1.2E-05 33.2 8.4 65 110-174 14-81 (110)
205 PF07292 NID: Nmi/IFP 35 domai 94.3 0.088 1.9E-06 35.4 4.2 73 48-131 1-74 (88)
206 PF14111 DUF4283: Domain of un 94.2 0.064 1.4E-06 40.3 3.8 120 9-145 18-141 (153)
207 PF11767 SET_assoc: Histone ly 93.8 0.31 6.8E-06 30.9 5.7 55 17-77 11-65 (66)
208 KOG4849 mRNA cleavage factor I 93.6 0.089 1.9E-06 44.1 3.7 68 109-176 80-153 (498)
209 KOG4285 Mitotic phosphoprotein 93.6 0.5 1.1E-05 39.0 7.8 70 109-185 197-266 (350)
210 KOG0804 Cytoplasmic Zn-finger 93.4 0.42 9.1E-06 41.7 7.6 66 109-174 74-142 (493)
211 KOG4574 RNA-binding protein (c 93.2 0.065 1.4E-06 50.0 2.6 67 14-83 306-374 (1007)
212 PF15023 DUF4523: Protein of u 93.1 0.47 1E-05 34.8 6.4 62 107-171 84-149 (166)
213 KOG2888 Putative RNA binding p 91.6 0.091 2E-06 43.7 1.3 8 75-82 163-170 (453)
214 KOG2068 MOT2 transcription fac 90.2 0.16 3.4E-06 42.5 1.6 69 108-176 76-154 (327)
215 PF03880 DbpA: DbpA RNA bindin 90.0 2.3 5.1E-05 27.5 6.7 56 118-178 10-70 (74)
216 KOG4019 Calcineurin-mediated s 89.5 2.2 4.7E-05 32.7 6.9 76 7-85 11-92 (193)
217 KOG2253 U1 snRNP complex, subu 88.3 0.46 9.9E-06 43.4 3.1 69 104-177 35-103 (668)
218 KOG2891 Surface glycoprotein [ 88.2 0.19 4.1E-06 40.9 0.7 66 5-70 148-247 (445)
219 KOG4483 Uncharacterized conser 87.9 1.2 2.7E-05 38.2 5.2 54 6-63 391-445 (528)
220 KOG4574 RNA-binding protein (c 87.9 0.27 5.8E-06 46.2 1.5 59 113-173 302-360 (1007)
221 PF04847 Calcipressin: Calcipr 87.7 2.7 5.8E-05 32.7 6.7 53 122-176 8-62 (184)
222 PRK14548 50S ribosomal protein 87.7 2.7 5.8E-05 28.1 5.7 58 8-65 22-81 (84)
223 TIGR03636 L23_arch archaeal ri 87.3 3.2 6.9E-05 27.2 5.8 56 8-63 15-72 (77)
224 KOG4410 5-formyltetrahydrofola 86.9 2.2 4.8E-05 35.1 5.9 58 6-66 330-395 (396)
225 KOG2888 Putative RNA binding p 86.1 0.35 7.5E-06 40.4 1.1 7 126-132 229-235 (453)
226 PF03468 XS: XS domain; Inter 85.0 0.78 1.7E-05 32.8 2.3 56 8-63 10-75 (116)
227 PF14893 PNMA: PNMA 82.4 1.7 3.7E-05 37.1 3.7 78 1-81 13-95 (331)
228 KOG2146 Splicing coactivator S 80.6 9.8 0.00021 31.4 7.1 17 49-65 56-72 (354)
229 PRK14548 50S ribosomal protein 80.5 14 0.00029 24.7 6.7 56 112-167 23-81 (84)
230 TIGR03636 L23_arch archaeal ri 78.7 16 0.00034 24.0 6.8 57 111-167 15-74 (77)
231 KOG1295 Nonsense-mediated deca 77.3 2.6 5.6E-05 36.2 3.1 66 6-71 7-78 (376)
232 PF11767 SET_assoc: Histone ly 77.0 16 0.00035 23.1 6.4 50 120-174 11-60 (66)
233 KOG3580 Tight junction protein 75.8 20 0.00043 33.1 8.3 40 106-145 58-98 (1027)
234 KOG2295 C2H2 Zn-finger protein 73.9 0.41 8.9E-06 42.8 -2.4 69 5-73 230-301 (648)
235 KOG4410 5-formyltetrahydrofola 73.5 34 0.00074 28.4 8.4 50 108-158 329-378 (396)
236 KOG2318 Uncharacterized conser 73.3 32 0.0007 31.5 8.9 76 107-182 172-303 (650)
237 COG5638 Uncharacterized conser 73.1 21 0.00046 31.1 7.5 38 3-40 143-185 (622)
238 PTZ00191 60S ribosomal protein 72.0 16 0.00034 27.2 5.7 54 8-61 83-138 (145)
239 KOG4213 RNA-binding protein La 70.7 6 0.00013 30.3 3.4 46 18-63 118-168 (205)
240 PF15513 DUF4651: Domain of un 70.1 12 0.00026 23.3 4.0 19 21-39 9-27 (62)
241 PF09707 Cas_Cas2CT1978: CRISP 68.5 13 0.00028 25.0 4.2 49 5-53 24-72 (86)
242 PF02714 DUF221: Domain of unk 67.9 11 0.00024 32.1 5.0 57 48-132 1-57 (325)
243 KOG1295 Nonsense-mediated deca 67.1 7.4 0.00016 33.5 3.6 66 109-174 7-79 (376)
244 PTZ00191 60S ribosomal protein 66.9 37 0.0008 25.2 6.7 57 110-166 82-141 (145)
245 PF07530 PRE_C2HC: Associated 66.4 24 0.00052 22.4 5.1 59 21-82 2-64 (68)
246 smart00596 PRE_C2HC PRE_C2HC d 64.5 16 0.00036 23.2 3.9 58 21-81 2-63 (69)
247 KOG4008 rRNA processing protei 63.2 6.3 0.00014 31.6 2.3 35 4-38 38-72 (261)
248 PRK08559 nusG transcription an 62.5 34 0.00074 25.7 6.2 33 33-67 36-68 (153)
249 PF02829 3H: 3H domain; Inter 60.0 30 0.00064 23.9 4.9 51 17-67 8-58 (98)
250 cd04889 ACT_PDH-BS-like C-term 59.7 34 0.00074 20.2 5.6 44 19-62 11-55 (56)
251 KOG4483 Uncharacterized conser 59.5 44 0.00095 29.2 6.8 56 108-166 390-446 (528)
252 PRK11558 putative ssRNA endonu 58.7 19 0.00041 24.7 3.7 50 6-55 27-76 (97)
253 PRK09631 DNA topoisomerase IV 57.5 89 0.0019 29.6 9.0 96 6-133 220-319 (635)
254 PF07292 NID: Nmi/IFP 35 domai 57.0 6.2 0.00013 26.6 1.1 25 4-28 50-74 (88)
255 COG0018 ArgS Arginyl-tRNA synt 55.5 82 0.0018 29.5 8.4 100 19-146 59-167 (577)
256 PF03439 Spt5-NGN: Early trans 55.4 33 0.00071 22.8 4.5 36 32-69 33-68 (84)
257 PF08734 GYD: GYD domain; Int 54.9 60 0.0013 21.9 5.8 45 123-167 22-67 (91)
258 PRK10629 EnvZ/OmpR regulon mod 54.5 81 0.0018 22.9 7.9 72 5-81 34-109 (127)
259 PRK05738 rplW 50S ribosomal pr 52.1 39 0.00085 22.9 4.5 33 8-40 21-55 (92)
260 CHL00123 rps6 ribosomal protei 51.8 56 0.0012 22.4 5.3 49 15-63 15-80 (97)
261 cd04908 ACT_Bt0572_1 N-termina 51.4 56 0.0012 20.1 6.5 44 19-63 14-58 (66)
262 PF09902 DUF2129: Uncharacteri 50.8 42 0.00091 21.6 4.2 39 26-70 16-54 (71)
263 PF13689 DUF4154: Domain of un 50.3 91 0.002 23.0 6.7 46 35-81 16-61 (145)
264 PF03468 XS: XS domain; Inter 50.3 36 0.00078 24.3 4.3 48 110-158 9-67 (116)
265 PF00276 Ribosomal_L23: Riboso 47.4 47 0.001 22.5 4.3 50 8-57 21-85 (91)
266 TIGR01873 cas_CT1978 CRISPR-as 46.8 40 0.00086 22.7 3.7 50 5-54 24-74 (87)
267 cd00187 TOP4c DNA Topoisomeras 46.6 98 0.0021 27.9 7.3 55 7-63 226-287 (445)
268 KOG2891 Surface glycoprotein [ 45.8 11 0.00024 31.0 1.1 66 121-186 173-265 (445)
269 PF11411 DNA_ligase_IV: DNA li 44.8 18 0.0004 19.7 1.5 17 16-32 19-35 (36)
270 KOG2854 Possible pfkB family c 44.2 1.1E+02 0.0025 26.2 6.8 49 4-53 79-127 (343)
271 PF08734 GYD: GYD domain; Int 43.5 1E+02 0.0022 20.8 5.7 45 20-65 22-67 (91)
272 COG0030 KsgA Dimethyladenosine 43.3 36 0.00079 28.1 3.8 32 7-38 96-127 (259)
273 PRK09630 DNA topoisomerase IV 42.1 1.3E+02 0.0029 27.1 7.2 59 6-65 220-282 (479)
274 PRK02886 hypothetical protein; 40.9 67 0.0015 21.6 4.1 38 27-70 21-58 (87)
275 PF10567 Nab6_mRNP_bdg: RNA-re 40.8 62 0.0013 27.1 4.7 54 109-162 15-79 (309)
276 PRK02302 hypothetical protein; 40.6 68 0.0015 21.7 4.1 38 27-70 23-60 (89)
277 KOG4019 Calcineurin-mediated s 39.0 25 0.00054 27.1 2.1 64 110-175 11-79 (193)
278 PRK12758 DNA topoisomerase IV 39.0 2.7E+02 0.006 27.5 9.2 97 5-133 240-340 (869)
279 KOG4365 Uncharacterized conser 38.9 5.3 0.00011 35.0 -1.7 75 6-81 3-80 (572)
280 PF12829 Mhr1: Transcriptional 38.8 70 0.0015 21.7 4.0 54 12-66 18-72 (91)
281 PF11823 DUF3343: Protein of u 38.6 39 0.00084 21.6 2.7 27 46-72 2-28 (73)
282 PF08544 GHMP_kinases_C: GHMP 36.7 1.2E+02 0.0025 19.6 5.8 43 124-167 37-79 (85)
283 cd04903 ACT_LSD C-terminal ACT 36.6 98 0.0021 18.7 5.4 46 19-65 12-59 (71)
284 cd04879 ACT_3PGDH-like ACT_3PG 36.5 98 0.0021 18.6 5.1 39 16-54 9-49 (71)
285 COG3254 Uncharacterized conser 36.3 1.5E+02 0.0032 20.7 5.5 42 124-165 27-69 (105)
286 PF14026 DUF4242: Protein of u 36.2 1.2E+02 0.0027 19.7 7.9 62 8-70 2-71 (77)
287 KOG0156 Cytochrome P450 CYP2 s 36.1 80 0.0017 28.9 5.2 59 10-75 36-97 (489)
288 PF01037 AsnC_trans_reg: AsnC 34.9 1.1E+02 0.0025 18.9 6.5 45 122-166 11-55 (74)
289 COG0150 PurM Phosphoribosylami 34.7 19 0.0004 30.8 0.9 50 18-68 273-322 (345)
290 KOG0862 Synaptobrevin/VAMP-lik 34.5 42 0.00091 26.7 2.7 31 21-56 89-120 (216)
291 PF01071 GARS_A: Phosphoribosy 33.8 1.2E+02 0.0025 24.0 5.1 47 19-66 25-71 (194)
292 PRK00911 dihydroxy-acid dehydr 33.2 2E+02 0.0043 26.8 7.1 36 44-82 397-432 (552)
293 KOG4246 Predicted DNA-binding 33.0 22 0.00047 34.1 1.1 18 43-60 57-74 (1194)
294 KOG2295 C2H2 Zn-finger protein 33.0 8.2 0.00018 35.0 -1.5 68 107-174 229-300 (648)
295 KOG2187 tRNA uracil-5-methyltr 32.8 1.4E+02 0.0031 27.3 6.0 71 11-83 30-101 (534)
296 TIGR00405 L26e_arch ribosomal 32.8 1.9E+02 0.0042 21.2 6.1 26 42-67 35-60 (145)
297 cd04909 ACT_PDH-BS C-terminal 32.1 1.2E+02 0.0027 18.5 5.4 47 19-65 14-62 (69)
298 cd06405 PB1_Mekk2_3 The PB1 do 31.9 1.5E+02 0.0032 19.3 7.4 63 11-79 13-76 (79)
299 PF05189 RTC_insert: RNA 3'-te 31.9 97 0.0021 21.3 4.1 46 8-53 12-65 (103)
300 COG3254 Uncharacterized conser 31.9 1.8E+02 0.0039 20.3 5.5 44 20-63 26-69 (105)
301 PF15063 TC1: Thyroid cancer p 31.8 32 0.00069 22.3 1.4 24 10-33 29-52 (79)
302 PF08442 ATP-grasp_2: ATP-gras 31.7 1.2E+02 0.0026 24.0 5.0 54 18-71 25-81 (202)
303 PF14111 DUF4283: Domain of un 31.7 37 0.00081 25.1 2.1 33 9-41 107-140 (153)
304 CHL00030 rpl23 ribosomal prote 31.6 1.5E+02 0.0032 20.2 4.7 33 8-40 20-54 (93)
305 KOG4008 rRNA processing protei 31.5 33 0.00071 27.7 1.7 33 109-141 40-72 (261)
306 PF05036 SPOR: Sporulation rel 31.0 72 0.0016 19.9 3.1 60 109-168 4-65 (76)
307 TIGR02542 B_forsyth_147 Bacter 30.2 1.9E+02 0.0042 20.5 5.1 24 14-39 11-34 (145)
308 KOG1888 Putative phosphoinosit 30.1 1.3E+02 0.0029 29.1 5.6 66 9-78 312-381 (868)
309 PF00398 RrnaAD: Ribosomal RNA 29.5 42 0.00092 27.6 2.2 44 6-63 97-142 (262)
310 PF00403 HMA: Heavy-metal-asso 29.3 1.3E+02 0.0029 18.0 6.2 54 8-64 1-58 (62)
311 COG5507 Uncharacterized conser 29.0 51 0.0011 22.6 2.1 20 46-65 67-86 (117)
312 PRK11901 hypothetical protein; 29.0 3.7E+02 0.0081 23.1 7.9 58 109-170 245-307 (327)
313 COG5353 Uncharacterized protei 29.0 2.5E+02 0.0054 21.0 6.0 54 4-57 85-154 (161)
314 PRK11230 glycolate oxidase sub 28.9 1.4E+02 0.0031 27.3 5.7 49 18-66 201-255 (499)
315 COG5193 LHP1 La protein, small 28.4 30 0.00065 30.2 1.1 57 7-63 175-244 (438)
316 PRK11634 ATP-dependent RNA hel 28.3 93 0.002 29.5 4.4 60 16-81 497-561 (629)
317 PF09869 DUF2096: Uncharacteri 27.7 1.7E+02 0.0037 22.3 4.8 47 13-66 118-164 (169)
318 TIGR00110 ilvD dihydroxy-acid 27.6 2.2E+02 0.0047 26.4 6.4 36 45-83 383-418 (535)
319 TIGR00755 ksgA dimethyladenosi 27.5 70 0.0015 26.1 3.2 24 8-31 96-119 (253)
320 cd04874 ACT_Af1403 N-terminal 27.3 1.5E+02 0.0032 17.9 6.6 48 19-66 13-61 (72)
321 PF06804 Lipoprotein_18: NlpB/ 27.3 3.5E+02 0.0076 22.9 7.4 48 6-58 198-246 (303)
322 COG3227 LasB Zinc metalloprote 27.0 4.8E+02 0.01 23.8 8.1 60 15-83 48-108 (507)
323 PF15407 Spo7_2_N: Sporulation 26.8 20 0.00043 22.8 -0.1 25 4-28 25-49 (67)
324 PTZ00338 dimethyladenosine tra 26.7 74 0.0016 26.9 3.2 26 8-33 103-128 (294)
325 PRK08559 nusG transcription an 25.5 2.9E+02 0.0063 20.6 6.3 44 125-169 24-68 (153)
326 KOG4246 Predicted DNA-binding 25.5 38 0.00083 32.6 1.3 26 109-134 145-176 (1194)
327 PF14893 PNMA: PNMA 25.4 53 0.0012 28.2 2.1 50 108-157 17-72 (331)
328 cd04878 ACT_AHAS N-terminal AC 25.3 1.6E+02 0.0035 17.7 7.0 59 8-66 2-63 (72)
329 PHA01632 hypothetical protein 25.2 84 0.0018 19.0 2.3 21 9-29 19-39 (64)
330 PF06014 DUF910: Bacterial pro 25.1 60 0.0013 20.2 1.7 18 19-36 3-20 (62)
331 PF11061 DUF2862: Protein of u 24.5 1.8E+02 0.0039 18.3 3.8 39 12-54 10-51 (64)
332 smart00195 DSPc Dual specifici 24.5 2.5E+02 0.0054 20.1 5.4 29 8-38 7-35 (138)
333 KOG3424 40S ribosomal protein 24.4 2E+02 0.0044 20.5 4.4 44 16-60 33-84 (132)
334 cd00027 BRCT Breast Cancer Sup 24.3 1.1E+02 0.0024 18.1 3.1 26 7-32 2-27 (72)
335 COG5584 Predicted small secret 24.3 75 0.0016 21.7 2.2 28 12-39 28-55 (103)
336 cd04905 ACT_CM-PDT C-terminal 23.4 2.1E+02 0.0046 18.3 5.9 49 19-67 14-68 (80)
337 KOG2603 Oligosaccharyltransfer 23.1 2.4E+02 0.0053 24.0 5.4 58 10-68 66-127 (331)
338 PF08206 OB_RNB: Ribonuclease 22.7 36 0.00078 20.7 0.5 37 44-81 7-44 (58)
339 PF12623 Hen1_L: RNA repair, l 22.6 2.4E+02 0.0051 22.9 5.0 58 8-65 120-183 (245)
340 smart00434 TOP4c DNA Topoisome 22.5 3.7E+02 0.0079 24.3 6.9 56 7-62 233-294 (445)
341 PRK15464 cold shock-like prote 22.4 61 0.0013 20.7 1.5 11 44-54 15-25 (70)
342 PF14191 YodL: YodL-like 22.4 2.6E+02 0.0056 19.5 4.7 23 7-29 39-61 (103)
343 PHA02592 52 DNA topisomerase I 22.3 5E+02 0.011 23.5 7.6 52 6-60 227-282 (439)
344 smart00650 rADc Ribosomal RNA 22.3 1.3E+02 0.0028 22.7 3.6 23 7-29 78-100 (169)
345 PF01782 RimM: RimM N-terminal 21.9 1.9E+02 0.0041 18.8 3.9 22 45-67 54-75 (84)
346 PF15585 Imm46: Immunity prote 21.8 3.3E+02 0.0071 19.9 5.7 44 109-160 51-96 (129)
347 cd04904 ACT_AAAH ACT domain of 21.8 2.2E+02 0.0049 18.0 7.0 50 18-67 12-65 (74)
348 PRK09937 stationary phase/star 21.7 72 0.0016 20.6 1.7 9 45-53 13-21 (74)
349 TIGR02381 cspD cold shock doma 21.5 71 0.0015 20.2 1.7 39 45-83 13-56 (68)
350 PRK00274 ksgA 16S ribosomal RN 21.4 1.1E+02 0.0025 25.3 3.3 22 8-29 107-128 (272)
351 PF07521 RMMBL: RNA-metabolisi 21.3 1.7E+02 0.0037 16.4 3.5 31 8-39 8-38 (43)
352 cd04882 ACT_Bt0572_2 C-termina 21.0 2E+02 0.0043 17.1 5.3 44 20-63 13-58 (65)
353 PF00521 DNA_topoisoIV: DNA gy 21.0 1.2E+02 0.0026 27.2 3.6 56 7-65 217-278 (426)
354 cd04931 ACT_PAH ACT domain of 20.9 2.7E+02 0.0059 18.7 7.6 48 19-66 27-79 (90)
355 PRK14998 cold shock-like prote 20.9 77 0.0017 20.4 1.8 10 45-54 13-22 (73)
356 PF03389 MobA_MobL: MobA/MobL 20.4 1.8E+02 0.0039 23.2 4.2 45 10-54 71-123 (216)
357 PRK12280 rplW 50S ribosomal pr 20.4 3.2E+02 0.0069 20.7 5.1 33 8-40 23-57 (158)
358 PF08156 NOP5NT: NOP5NT (NUC12 20.4 28 0.00062 22.0 -0.3 38 21-65 27-64 (67)
359 PRK11901 hypothetical protein; 20.2 4.7E+02 0.01 22.5 6.6 58 6-68 245-307 (327)
360 PRK09507 cspE cold shock prote 20.1 74 0.0016 20.2 1.5 10 45-54 15-24 (69)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.2e-32 Score=232.89 Aligned_cols=162 Identities=26% Similarity=0.366 Sum_probs=140.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
...++|||+|||+++|+++|+++|+.||+|+.|.|+. ++.++|||||+|.++++|..|++.||+..|.++.|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3578999999999999999999999999999999954 5678899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEec
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~ 156 (277)
.+.... ...++|||.|||..+++++|+++|.+||+|..+.|+.+..+ +||||+|.+
T Consensus 185 ~p~~~~--------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~ 244 (346)
T TIGR01659 185 RPGGES--------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNK 244 (346)
T ss_pred cccccc--------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECC
Confidence 643211 12468999999999999999999999999999999877543 599999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
.++|++||+.||+..+.+.. ..|.|..++
T Consensus 245 ~e~A~~Ai~~lng~~~~g~~--~~l~V~~a~ 273 (346)
T TIGR01659 245 REEAQEAISALNNVIPEGGS--QPLTVRLAE 273 (346)
T ss_pred HHHHHHHHHHhCCCccCCCc--eeEEEEECC
Confidence 99999999999999997743 344444443
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1.7e-29 Score=186.04 Aligned_cols=187 Identities=60% Similarity=1.020 Sum_probs=160.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 1 ~~~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
|+++.+++|||+|||.++.+.+|..||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78999999999999999999999999999999999999887778899999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCC------CCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEE
Q 023767 81 HGGRRHSSSMDRYSS------YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDY 154 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f 154 (277)
............+.. -......++.......|.|.+||+..+++||++++.+.|+|.+..+.++. ++.|+|
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg---~GvV~~ 157 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG---VGVVEY 157 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc---ceeeee
Confidence 987633222111111 11112235566778999999999999999999999999999999999885 789999
Q ss_pred echhHHHHHHHhcCCCeecccceeeEEEEeecCCCC
Q 023767 155 TSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (277)
Q Consensus 155 ~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~r 190 (277)
...++++.|+.+|+...+.....+..|++...+...
T Consensus 158 ~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred eehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 999999999999999998877778888888776553
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.3e-29 Score=225.08 Aligned_cols=170 Identities=20% Similarity=0.317 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
..++|||+|||+.+++++|+++|.+||+|..|.|+. +++++|||||+|.+.++|..|++.|||..|.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 467999999999999999999999999999999954 57889999999999999999999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEech
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSY 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~ 157 (277)
......... ...........+|||+||+..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.
T Consensus 186 ~~p~a~~~~---------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 186 NMPQAQPII---------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ccccccccc---------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 322111000 00011122357999999999999999999999999999999998754 36999999999
Q ss_pred hHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
++|.+|+..||+..++| ..|+|...-
T Consensus 257 e~A~kAI~amNg~elgG----r~LrV~kAi 282 (612)
T TIGR01645 257 QSQSEAIASMNLFDLGG----QYLRVGKCV 282 (612)
T ss_pred HHHHHHHHHhCCCeeCC----eEEEEEecC
Confidence 99999999999999999 566665443
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-29 Score=218.43 Aligned_cols=161 Identities=22% Similarity=0.363 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+.++|||+|||+.+|+++|+++|+.||+|.+|.|+. ++.++|||||+|.++++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 578999999999999999999999999999999964 56789999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEech
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSY 157 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~ 157 (277)
+.... ....+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.
T Consensus 82 ~~~~~--------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~ 141 (352)
T TIGR01661 82 PSSDS--------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKR 141 (352)
T ss_pred ccccc--------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCH
Confidence 53321 124689999999999999999999999999999988764 346999999999
Q ss_pred hHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 158 DDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
++|+.|+..|||..+.|... .|.+....
T Consensus 142 ~~A~~ai~~l~g~~~~g~~~--~i~v~~a~ 169 (352)
T TIGR01661 142 DEADRAIKTLNGTTPSGCTE--PITVKFAN 169 (352)
T ss_pred HHHHHHHHHhCCCccCCCce--eEEEEECC
Confidence 99999999999999987433 45555443
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=9.6e-29 Score=220.31 Aligned_cols=171 Identities=20% Similarity=0.282 Sum_probs=142.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
+++.++|||+|||+.+++++|+++|+.||+|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 35688999999999999999999999999999999965 46789999999999999999998 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEe
Q 023767 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYT 155 (277)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~ 155 (277)
+............ ......+...+|||+|||..+++++|.++|.+||.|..|.+..+..+ +||||+|.
T Consensus 165 ~~~~~~~~~~~~~--------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~ 236 (457)
T TIGR01622 165 SQAEKNRAAKAAT--------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFH 236 (457)
T ss_pred cchhhhhhhhccc--------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEEC
Confidence 7643221110000 00001122689999999999999999999999999999999977654 69999999
Q ss_pred chhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
+.++|..|+..|||..+.| ..|.|...
T Consensus 237 ~~e~A~~A~~~l~g~~i~g----~~i~v~~a 263 (457)
T TIGR01622 237 DAEEAKEALEVMNGFELAG----RPIKVGYA 263 (457)
T ss_pred CHHHHHHHHHhcCCcEECC----EEEEEEEc
Confidence 9999999999999999999 45666554
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=1.5e-27 Score=205.80 Aligned_cols=180 Identities=24% Similarity=0.318 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (277)
..++|||+|||+.+++++|.++|++||.|..+.++. ++.++|||||+|.+.++|..|++.|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 456899999999999999999999999999999865 45678999999999999999999999999887 5688888
Q ss_pred ccCCCCCCCC-------------CCC-CCC----------------------------------------------CCCC
Q 023767 80 AHGGRRHSSS-------------MDR-YSS----------------------------------------------YSSG 99 (277)
Q Consensus 80 a~~~~~~~~~-------------~~~-~~~----------------------------------------------~~~~ 99 (277)
+......... ... ... ....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 8644311000 000 000 0000
Q ss_pred C------------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHH
Q 023767 100 G------------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYA 163 (277)
Q Consensus 100 ~------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a 163 (277)
. ........+.+|||+|||..+++++|.++|.+||.|..|.|+.+. ..|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0 000001223479999999999999999999999999999999876 346999999999999999
Q ss_pred HHhcCCCeecccceeeEEEEeecCC
Q 023767 164 IRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 164 ~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
+..|||..++| ..|.|.....
T Consensus 328 i~~lnG~~~~g----r~i~V~~~~~ 348 (352)
T TIGR01661 328 ILSLNGYTLGN----RVLQVSFKTN 348 (352)
T ss_pred HHHhCCCEECC----eEEEEEEccC
Confidence 99999999999 5777766544
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=5.8e-28 Score=215.20 Aligned_cols=170 Identities=16% Similarity=0.183 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc--CCcccCCceEEEEEccC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR--DGYNFDGYRLRVELAHG 82 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~a~~ 82 (277)
|+++|||+|||+.+++++|+++|++||+|..|.|+. .++||||+|.+.++|..|++.| ++..|.|+.|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999974 3689999999999999999864 77899999999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHH
Q 023767 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~ 162 (277)
........ . ...........+|+|.||++.+++++|.++|..||.|..|.++.+...++|||+|.+.++|.+
T Consensus 78 ~~~~~~~~---~-----~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~ 149 (481)
T TIGR01649 78 QEIKRDGN---S-----DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQH 149 (481)
T ss_pred cccccCCC---C-----cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHH
Confidence 43221110 0 000111223457999999999999999999999999999999887776799999999999999
Q ss_pred HHHhcCCCeecccceeeEEEEeecC
Q 023767 163 AIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 163 a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
|+..|||..+.+.. ..|.+...+
T Consensus 150 A~~~Lng~~i~~~~--~~l~v~~sk 172 (481)
T TIGR01649 150 AKAALNGADIYNGC--CTLKIEYAK 172 (481)
T ss_pred HHHHhcCCcccCCc--eEEEEEEec
Confidence 99999999997642 345555544
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.6e-28 Score=188.22 Aligned_cols=169 Identities=18% Similarity=0.296 Sum_probs=143.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
-|||+.|.+.++-+.|++.|.+||+|.++++. .+++++||+||.|.+.++|+.||..|||..|.++.|...||..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 48999999999999999999999999999994 478999999999999999999999999999999999999998655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHH
Q 023767 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~ 164 (277)
....... ..=..-.....+..++|||+|++..+++++|++.|..||.|..|.+..+. +|+||.|++.|.|..||
T Consensus 144 ~e~n~~~----ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAI 217 (321)
T KOG0148|consen 144 SEMNGKP----LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAI 217 (321)
T ss_pred cccCCCC----ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHH
Confidence 2111000 00001123345568999999999999999999999999999999999886 49999999999999999
Q ss_pred HhcCCCeecccceeeEEE
Q 023767 165 RKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 165 ~~l~g~~~~g~~~~~~i~ 182 (277)
..+|+.+|.|..+++...
T Consensus 218 v~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 218 VQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred HHhcCceeCceEEEEecc
Confidence 999999999976655443
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=8.6e-27 Score=207.74 Aligned_cols=182 Identities=20% Similarity=0.261 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 4 RSSRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~s~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
.++++|||+||++ .+|+++|+++|+.||.|..|.++.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 3678999999998 69999999999999999999997653 69999999999999999999999999999999999876
Q ss_pred CCCCCCCC----CC---CCCCCCC--CC--------CCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEe
Q 023767 83 GRRHSSSM----DR---YSSYSSG--GS--------RGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFR 143 (277)
Q Consensus 83 ~~~~~~~~----~~---~~~~~~~--~~--------~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~ 143 (277)
........ +. ...+... .. .....++..+|||.|||..+++++|+++|..||. |..+.+..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~ 430 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP 430 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec
Confidence 43211110 00 0001100 00 0111245779999999999999999999999998 77777764
Q ss_pred cC--CCcEEEEEEechhHHHHHHHhcCCCeeccccee--eEEEEeecC
Q 023767 144 DR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR--SYVRVREYD 187 (277)
Q Consensus 144 ~~--~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~--~~i~~~~~~ 187 (277)
.. ..++|||+|.+.++|.+||..|||..+.+.... ..|++...+
T Consensus 431 ~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 431 KDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred CCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 33 236999999999999999999999999985422 245555543
No 10
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=3.1e-28 Score=191.42 Aligned_cols=145 Identities=28% Similarity=0.528 Sum_probs=135.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 86 (277)
-+|||||||..+++.+|+.||++||+|.+|.|+ |+||||..++...|..|+.+|+|.+|+|..|.|+.++.+...
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 379999999999999999999999999999998 789999999999999999999999999999999999876321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHh
Q 023767 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~ 166 (277)
.++|+|+||.+.++.++|+..|++||.|+.++|.++ |+||.|+..++|..|+..
T Consensus 78 ----------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~ 131 (346)
T KOG0109|consen 78 ----------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRG 131 (346)
T ss_pred ----------------------ccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhc
Confidence 568999999999999999999999999999999999 999999999999999999
Q ss_pred cCCCeecccceeeEEE
Q 023767 167 LDRSEFRNAFSRSYVR 182 (277)
Q Consensus 167 l~g~~~~g~~~~~~i~ 182 (277)
||+.++.|+...+.+.
T Consensus 132 l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 132 LDNTEFQGKRMHVQLS 147 (346)
T ss_pred ccccccccceeeeeee
Confidence 9999999976655543
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=3.5e-27 Score=215.03 Aligned_cols=156 Identities=24% Similarity=0.383 Sum_probs=136.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
+|||+|||+++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 46788999999999999999999999999999999999976322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHH
Q 023767 85 RHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMK 161 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~a~ 161 (277)
.. ......+|||+||+.++++++|.++|..||.|..|.+..+.. .+||||+|.+.++|.
T Consensus 82 ~~------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~ 143 (562)
T TIGR01628 82 SL------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAK 143 (562)
T ss_pred cc------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHH
Confidence 11 011245899999999999999999999999999999987753 469999999999999
Q ss_pred HHHHhcCCCeecccceeeEEEEee
Q 023767 162 YAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
.|++.|||..+.|+ .|.+..
T Consensus 144 ~Ai~~lng~~~~~~----~i~v~~ 163 (562)
T TIGR01628 144 AAIQKVNGMLLNDK----EVYVGR 163 (562)
T ss_pred HHHHHhcccEecCc----eEEEec
Confidence 99999999999984 555543
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=1.1e-26 Score=206.38 Aligned_cols=176 Identities=22% Similarity=0.309 Sum_probs=136.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~a~~ 82 (277)
.++|||+|||+++++++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|.++..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 48999999999999999999999999999999865 5788999999999999999999999998885 77766655431
Q ss_pred CCC-------CCCC------------------------CCCCC--C------------------CC-------CC-----
Q 023767 83 GRR-------HSSS------------------------MDRYS--S------------------YS-------SG----- 99 (277)
Q Consensus 83 ~~~-------~~~~------------------------~~~~~--~------------------~~-------~~----- 99 (277)
... .... ..... . +. +.
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 100 0000 00000 0 00 00
Q ss_pred ----C--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCe
Q 023767 100 ----G--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (277)
Q Consensus 100 ----~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~ 171 (277)
. ..........+|||+||+..+++++|+++|.+| |.|..|.+..+ ||||+|.+.++|++|++.||+.+
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~~ 293 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGKE 293 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCCE
Confidence 0 000012235689999999999999999999999 99999988765 99999999999999999999999
Q ss_pred ecccceeeEEEEeecCCC
Q 023767 172 FRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 172 ~~g~~~~~~i~~~~~~~~ 189 (277)
|+| ..|.|....+.
T Consensus 294 i~G----r~I~V~~Akp~ 307 (578)
T TIGR01648 294 LEG----SEIEVTLAKPV 307 (578)
T ss_pred ECC----EEEEEEEccCC
Confidence 999 67777766543
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.8e-26 Score=208.41 Aligned_cols=176 Identities=19% Similarity=0.274 Sum_probs=134.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhcc------------CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKY------------GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~------------G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
+...++|||+|||+.+|+++|+++|.+| +.|..+.+. ..+|||||+|.+.++|..||+ |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 345555443 458999999999999999996 999999
Q ss_pred CCceEEEEEccCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 023767 71 DGYRLRVELAHGGRRHSSSMDRYS---------SYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (277)
Q Consensus 71 ~g~~l~v~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 141 (277)
.|..|.|.........+....... ................+|||+|||..+++++|.++|..||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 999999976554332111000000 00000011112345679999999999999999999999999999998
Q ss_pred EecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 142 FRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 142 ~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
+.+. ..|||||+|.+.++|..|+..|||..+.|. .|.|...
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~----~l~v~~a 372 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN----KLHVQRA 372 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEC
Confidence 8764 346999999999999999999999999994 5555554
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=3.1e-26 Score=206.86 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=137.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
.+.++|||+|||+.+|+++|+++|+.||.|..+.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999999854 5778999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCC--CCCC---CC---CCCCCCCCCCceEEEeCCCCCC----------CHHHHHHHHHhcCCeeEEEEE
Q 023767 81 HGGRRHSSSMDRY--SSYS---SG---GSRGVSRRSDYRVLVTGLPSSA----------SWQDLKDHMRRAGDVCFSQVF 142 (277)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~---~~---~~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~v~~~~~~ 142 (277)
............. .... .. ........+..+|+|.||...- ..++|+++|.+||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 7544322111100 0000 00 0001112356789999986421 236799999999999999998
Q ss_pred ecC-------CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 143 RDR-------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 143 ~~~-------~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.+. ..|+|||+|.+.++|++|+..|||.+|+|+ .|.+...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr----~v~~~~~ 499 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDR----VVVAAFY 499 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCe----EEEEEEe
Confidence 652 136899999999999999999999999994 5544443
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=2e-26 Score=169.66 Aligned_cols=160 Identities=24% Similarity=0.342 Sum_probs=137.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+...||||+||+..++++.|++||-+.|+|.++.++. +...+|||||+|.++|+|+-|++.||...+.|++|.|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5568999999999999999999999999999999965 4578999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEEecCC----CcEEEEEEe
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFS-QVFRDRG----GMTGIVDYT 155 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~~~~fV~f~ 155 (277)
...... ...+.++||+||.+.+++..|.+.|..||.+... .++.+.. .+||||.|.
T Consensus 87 s~~~~n-------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~ 147 (203)
T KOG0131|consen 87 SAHQKN-------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYA 147 (203)
T ss_pred cccccc-------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEech
Confidence 732211 1225799999999999999999999999988763 5665554 359999999
Q ss_pred chhHHHHHHHhcCCCeecccceeeEEE
Q 023767 156 SYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
..+.+.+|+..+||..++++.+++.+.
T Consensus 148 sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 148 SFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred hHHHHHHHHHHhccchhcCCceEEEEE
Confidence 999999999999999999954444433
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-26 Score=190.80 Aligned_cols=166 Identities=21% Similarity=0.405 Sum_probs=141.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCc-ccCC--ceEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGY-NFDG--YRLRVE 78 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~-~~~g--~~l~v~ 78 (277)
+.-+|||+-||..++|.||+++|++||.|.+|.|+. ++.++|+|||.|.+.++|++|+..|++. +|.| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 345799999999999999999999999999999965 5788999999999999999999999984 4544 468999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEe
Q 023767 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYT 155 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~ 155 (277)
+|....... ....+|||+-|+..+++.+|+++|.+||.|++|.|+++..+ |||||.|.
T Consensus 113 ~Ad~E~er~-------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fs 173 (510)
T KOG0144|consen 113 YADGERERI-------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFS 173 (510)
T ss_pred ccchhhhcc-------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEe
Confidence 988654321 22579999999999999999999999999999999988654 79999999
Q ss_pred chhHHHHHHHhcCCCee-cccceeeEEEEeecCCCCc
Q 023767 156 SYDDMKYAIRKLDRSEF-RNAFSRSYVRVREYDSRRS 191 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~-~g~~~~~~i~~~~~~~~r~ 191 (277)
+.+.|..||+.|||..- .| +...+-|..++..+.
T Consensus 174 tke~A~~Aika~ng~~tmeG--cs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 174 TKEMAVAAIKALNGTQTMEG--CSQPLVVKFADTQKD 208 (510)
T ss_pred hHHHHHHHHHhhccceeecc--CCCceEEEecccCCC
Confidence 99999999999999764 44 345777877776553
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=7.8e-26 Score=187.50 Aligned_cols=169 Identities=22% Similarity=0.297 Sum_probs=134.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCccc-CCceEEEEEccC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF-DGYRLRVELAHG 82 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~a~~ 82 (277)
+-||||.||.++.|++|.-||+..|+|-++.|+. ++.++|||||.|.+.+.|+.|++.||+..| .|+.|.|..+..
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 5699999999999999999999999999999966 578999999999999999999999999988 588888877663
Q ss_pred CC-------CCCCC------------------------CC----CC-----------------CC-------CCCC----
Q 023767 83 GR-------RHSSS------------------------MD----RY-----------------SS-------YSSG---- 99 (277)
Q Consensus 83 ~~-------~~~~~------------------------~~----~~-----------------~~-------~~~~---- 99 (277)
+. +..+. .+ +. .. .+..
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 31 10000 00 00 00 0000
Q ss_pred C------CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 100 G------SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 100 ~------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
+ .....+.....|||.||+..+|++.|+++|.+||.|+.|..++| ||||.|.+.++|.+|++.+||++|+
T Consensus 244 WAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 244 WAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred ccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceec
Confidence 0 00012234568999999999999999999999999999999988 9999999999999999999999999
Q ss_pred ccceee
Q 023767 174 NAFSRS 179 (277)
Q Consensus 174 g~~~~~ 179 (277)
|..+.+
T Consensus 320 G~~iEv 325 (506)
T KOG0117|consen 320 GSPIEV 325 (506)
T ss_pred CceEEE
Confidence 954433
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=1.7e-25 Score=203.99 Aligned_cols=177 Identities=19% Similarity=0.303 Sum_probs=141.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC----CceEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRVE 78 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~----g~~l~v~ 78 (277)
..++|||+|||+++|+++|+++|+.||+|..+.+.. ++..+|||||+|.+.++|.+|++.||+..|. |..|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 457899999999999999999999999999999965 4567899999999999999999999999999 9999998
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEe
Q 023767 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYT 155 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~ 155 (277)
++......... ....+..............+|||+||+..+++++|+++|.+||.|..|.++.+.. .+||||+|.
T Consensus 257 ~a~~k~er~~~--~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 257 RAQKRAEREAE--LRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred cccChhhhHHH--HHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 87654321100 0000000000111223467899999999999999999999999999999988743 369999999
Q ss_pred chhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 156 SYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
+.++|.+|+..|||..+.|+ .|.|..+.
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk----~l~V~~a~ 362 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGK----PLYVALAQ 362 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCc----eeEEEecc
Confidence 99999999999999999995 55555444
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=4.6e-25 Score=196.71 Aligned_cols=174 Identities=21% Similarity=0.320 Sum_probs=135.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
+++|||+|||+.+|+++|+++|++||.|..|.|+. ++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999965 457789999999999999999999999999999999999763
Q ss_pred CCCCCCC------------CC------------------C---CCCCCCCC-----------------------------
Q 023767 83 GRRHSSS------------MD------------------R---YSSYSSGG----------------------------- 100 (277)
Q Consensus 83 ~~~~~~~------------~~------------------~---~~~~~~~~----------------------------- 100 (277)
....... .. . .....+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 2111000 00 0 00000000
Q ss_pred ----C-CCC---CCCCCceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHH
Q 023767 101 ----S-RGV---SRRSDYRVLVTGLPSSAS----------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (277)
Q Consensus 101 ----~-~~~---~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~ 162 (277)
. ..+ ...+..+|+|.||....+ .+||.+.|.+||.|+.|.|......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 000 113457888999855433 3689999999999999999877777899999999999999
Q ss_pred HHHhcCCCeecccceee
Q 023767 163 AIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 163 a~~~l~g~~~~g~~~~~ 179 (277)
|+..|||..++|+.+..
T Consensus 426 A~~~lnGr~f~gr~i~~ 442 (457)
T TIGR01622 426 AFQALNGRYFGGKMITA 442 (457)
T ss_pred HHHHhcCcccCCeEEEE
Confidence 99999999999954443
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=9.5e-26 Score=174.92 Aligned_cols=162 Identities=22% Similarity=0.342 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
...+.|.|.-||..+|++||+.||...|+|+.|+|.. ++++.||+||-|.+++||++|+..|||..+..+.|.|.+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 3456799999999999999999999999999999954 6899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEec
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~ 156 (277)
.+....-. ..+|||.+||..++..+|+++|.+||.|....|..+..+ |.+||.|+.
T Consensus 119 RPSs~~Ik--------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDK 178 (360)
T KOG0145|consen 119 RPSSDSIK--------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDK 178 (360)
T ss_pred cCChhhhc--------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecc
Confidence 86543222 578999999999999999999999999988777766544 599999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
..+|+.||..|||..-.|.. ..|.|..+.
T Consensus 179 r~EAe~AIk~lNG~~P~g~t--epItVKFan 207 (360)
T KOG0145|consen 179 RIEAEEAIKGLNGQKPSGCT--EPITVKFAN 207 (360)
T ss_pred hhHHHHHHHhccCCCCCCCC--CCeEEEecC
Confidence 99999999999999998853 456666554
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.6e-25 Score=186.51 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=144.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
..||||++||+.++.++|.++|+.+|+|..+.+.. ++..+||+||.|.-++|++.|++.+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999965 346789999999999999999999999999999999999987
Q ss_pred CCCCCCCC-CCC----CCCCCCCCC-CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEE
Q 023767 83 GRRHSSSM-DRY----SSYSSGGSR-GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVD 153 (277)
Q Consensus 83 ~~~~~~~~-~~~----~~~~~~~~~-~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~ 153 (277)
........ ... ....+..+. .-...+.+.|+|.|||+.+...+|+.+|..||.|..|.|+....+ |||||+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 65443210 000 001110000 111234789999999999999999999999999999999977665 599999
Q ss_pred EechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 154 YTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 154 f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
|.+..+|..|++.+|+.+|+|+.+-+-+.|
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 999999999999999999999544443333
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=4.2e-24 Score=165.82 Aligned_cols=170 Identities=24% Similarity=0.348 Sum_probs=138.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc--eEEEEEc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY--RLRVELA 80 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~--~l~v~~a 80 (277)
...|||.+||..+|..||.++|++||.|+.-.+.. ++.++|.+||.|...++|+.|++.|||..-.|. +|.|+|+
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 35699999999999999999999999888877643 678899999999999999999999999888776 5999999
Q ss_pred cCCCCCCCCCCCCC-------CCCCC------------------------------------CCCCCCCCCCceEEEeCC
Q 023767 81 HGGRRHSSSMDRYS-------SYSSG------------------------------------GSRGVSRRSDYRVLVTGL 117 (277)
Q Consensus 81 ~~~~~~~~~~~~~~-------~~~~~------------------------------------~~~~~~~~~~~~l~v~~l 117 (277)
+.+........... .+.++ ...+......++|||=||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 97643322110000 00000 001122345899999999
Q ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 118 PSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 118 ~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
.+++++..|.++|.+||.|..|.+.++.. .||+||.|.+.++|..||..|||..++++
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r 348 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR 348 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce
Confidence 99999999999999999999999998865 36999999999999999999999999984
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.3e-23 Score=175.86 Aligned_cols=178 Identities=21% Similarity=0.370 Sum_probs=137.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
.-.|+|.|||+.+...+|+.+|++||.|.+|.|+. ++...|||||+|.+..+|..|++.||+..|+|++|-|.||-+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45799999999999999999999999999999965 5666799999999999999999999999999999999999855
Q ss_pred CCCCCCC---------------------C----------------CC--C-----------------CCCCC---C----
Q 023767 84 RRHSSSM---------------------D----------------RY--S-----------------SYSSG---G---- 100 (277)
Q Consensus 84 ~~~~~~~---------------------~----------------~~--~-----------------~~~~~---~---- 100 (277)
....... + .. . ..... +
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3321100 0 00 0 00000 0
Q ss_pred -CC------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhc--
Q 023767 101 -SR------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKL-- 167 (277)
Q Consensus 101 -~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l-- 167 (277)
.. ........+|||.|||+++++++|.++|.+||+|.++.++.++.+ |.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 00 001112479999999999999999999999999999998877655 59999999999999999876
Q ss_pred ---CC-CeecccceeeEEEE
Q 023767 168 ---DR-SEFRNAFSRSYVRV 183 (277)
Q Consensus 168 ---~g-~~~~g~~~~~~i~~ 183 (277)
.| ..++|+.+.+.+.|
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av 376 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAV 376 (678)
T ss_pred cCCCceEEEeccEEeeeecc
Confidence 33 56677555444443
No 24
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=7.6e-24 Score=163.86 Aligned_cols=160 Identities=38% Similarity=0.625 Sum_probs=132.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 86 (277)
..|||++||+.+.+.+|..||..||.|.++.|+ .+|+||+|.++.+|+.|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 368999999999999999999999999999998 689999999999999999999999999999999998864322
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHH
Q 023767 87 SSSMDRYSSYS-SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIR 165 (277)
Q Consensus 87 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~ 165 (277)
..... ..... .......+....+.+.|.+++..+.+++|.++|+++|.+....+..+ ++||+|.+.++|..|+.
T Consensus 77 ~g~~~-~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~~----~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 77 RGRPR-GGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARRN----FAFVEFSEQEDAKRALE 151 (216)
T ss_pred cCCCC-CCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhcc----ccceeehhhhhhhhcch
Confidence 21000 00000 12233455667889999999999999999999999999966555333 89999999999999999
Q ss_pred hcCCCeecccc
Q 023767 166 KLDRSEFRNAF 176 (277)
Q Consensus 166 ~l~g~~~~g~~ 176 (277)
.|++..+.++.
T Consensus 152 ~l~~~~~~~~~ 162 (216)
T KOG0106|consen 152 KLDGKKLNGRR 162 (216)
T ss_pred hccchhhcCce
Confidence 99999999943
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.4e-23 Score=170.27 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=137.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
+.||||.|.+.+.|+.|+..|..||+|+.|+|-+ +++++|||||+|+-+|.|..|++.|||..++|+.|.|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 5799999999999999999999999999999954 6799999999999999999999999999999999999854322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhH
Q 023767 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~ 159 (277)
....+..+ ........-+.|||..+.++++++||+..|..||+|..|.+.+.+.+ ||+||+|.+...
T Consensus 194 pQAQpiID---------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 194 PQAQPIID---------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred cccchHHH---------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 11110000 00001123568999999999999999999999999999999988754 599999999999
Q ss_pred HHHHHHhcCCCeecccceeeEEEEe
Q 023767 160 MKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..+|+..||-..++| ..++|.
T Consensus 265 ~~eAiasMNlFDLGG----QyLRVG 285 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGG----QYLRVG 285 (544)
T ss_pred hHHHhhhcchhhccc----ceEecc
Confidence 999999999999999 455554
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.5e-21 Score=143.19 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=67.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecCC
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYDS 188 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~ 188 (277)
.++|||+||+..+++.||+.+|..||.|..|+|..+ +.+||||||+++.+|+.|+..|+|..|+| ..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~cG----~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDICG----SRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccccC----ceEEEEeecC
Confidence 689999999999999999999999999999999995 44699999999999999999999999999 5666665543
No 27
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.89 E-value=1.5e-23 Score=171.15 Aligned_cols=169 Identities=16% Similarity=0.151 Sum_probs=123.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (277)
+.....|.|.||.+++|.++|+.||..+|+|.++.|+.+ +.....|||.|.+...+..|.+ |.+++|-++.|.
T Consensus 4 g~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdrali 82 (479)
T KOG4676|consen 4 GSSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALI 82 (479)
T ss_pred CCCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEE
Confidence 445669999999999999999999999999999999542 2345689999999999999998 777777777777
Q ss_pred EEEccCCCCCCC---------C-CCCC----CCCCCCCC------------CCCCCC----------CCceEEEeCCCCC
Q 023767 77 VELAHGGRRHSS---------S-MDRY----SSYSSGGS------------RGVSRR----------SDYRVLVTGLPSS 120 (277)
Q Consensus 77 v~~a~~~~~~~~---------~-~~~~----~~~~~~~~------------~~~~~~----------~~~~l~v~~l~~~ 120 (277)
|........+.. + .... ..+.+..+ .+|+.+ ...+++|++|+..
T Consensus 83 v~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 83 VRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISA 162 (479)
T ss_pred EEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhh
Confidence 766543322111 0 0000 00000000 001111 1357999999999
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 121 ASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 121 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
+-..++.+.|..+|+|.+..+.......+|.|+|........|+. ++|.++.
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999999999999887777788999999999999886 6665554
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.2e-21 Score=166.85 Aligned_cols=147 Identities=25% Similarity=0.351 Sum_probs=131.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRH 86 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~ 86 (277)
..|||| +++|+..|.++|+++|+|..+.+..+-.+.|||||.|.++++|.+||..||...+.|++|.|.|+.....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS- 77 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc-
Confidence 468999 9999999999999999999999944223899999999999999999999999999999999999885331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechhHHHHHH
Q 023767 87 SSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAI 164 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fV~f~~~~~a~~a~ 164 (277)
.+||.||++.++..+|.++|..||.|+.|.+..+..+ +| ||+|+++++|.+|+
T Consensus 78 ------------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 78 ------------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAI 132 (369)
T ss_pred ------------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHH
Confidence 2999999999999999999999999999999988765 58 99999999999999
Q ss_pred HhcCCCeecccceeeEEEEeec
Q 023767 165 RKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 165 ~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
..+||..+.|+ .|.+...
T Consensus 133 ~~~ng~ll~~k----ki~vg~~ 150 (369)
T KOG0123|consen 133 EKLNGMLLNGK----KIYVGLF 150 (369)
T ss_pred HHhcCcccCCC----eeEEeec
Confidence 99999999994 5555433
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=171.57 Aligned_cols=159 Identities=23% Similarity=0.412 Sum_probs=133.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--C----CCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--P----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~--~----~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
++|||.||++.+|.++|..+|...|.|..+.|..- + .+.|||||+|.++++|..|++.|+|..|+|..|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 33999999999999999999999999999988442 2 23499999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEec
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~ 156 (277)
........ +..-+.....++|+|.|||+.++..+|+++|..||.+..|.|+... ..|||||+|.+
T Consensus 596 ~~k~~~~~-----------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 596 ENKPASTV-----------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred cCcccccc-----------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 82221111 1112222337899999999999999999999999999999998662 23699999999
Q ss_pred hhHHHHHHHhcCCCeecccc
Q 023767 157 YDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~ 176 (277)
+.+|..|++.|....+-|+.
T Consensus 665 ~~ea~nA~~al~STHlyGRr 684 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRR 684 (725)
T ss_pred cHHHHHHHHhhcccceechh
Confidence 99999999999999999843
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=7.6e-21 Score=139.44 Aligned_cols=79 Identities=49% Similarity=0.812 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
-.++|||+||+..+++.||..+|..||+|..|+|.. .+.|||||||+++.+|+.|+..|+|..|.|..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 468999999999999999999999999999999965 458999999999999999999999999999999999988654
Q ss_pred C
Q 023767 85 R 85 (277)
Q Consensus 85 ~ 85 (277)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 3
No 31
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.86 E-value=2.5e-20 Score=142.86 Aligned_cols=172 Identities=23% Similarity=0.354 Sum_probs=139.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHH----HhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023767 1 MSSRSSRTLYVGNLPGDTRMREVED----LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 1 ~~~~~s~~l~V~nl~~~~t~~~l~~----~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (277)
|+..++.||||.||+..+..++|+. ||++||.|.+|.+..+.+.+|.|||.|.+.+.|-.|+..|+|..|.|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3456777999999999999999888 999999999999998999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCC-----------------------CCCCCCCCC---C---CC-CCCCCCCCceEEEeCCCCCCCHHHH
Q 023767 77 VELAHGGRRHSSS-----------------------MDRYSSYSS---G---GS-RGVSRRSDYRVLVTGLPSSASWQDL 126 (277)
Q Consensus 77 v~~a~~~~~~~~~-----------------------~~~~~~~~~---~---~~-~~~~~~~~~~l~v~~l~~~~~~~~l 126 (277)
|.+|..+...-.. .+....+.. . .. .....++...+++.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999854221100 000000000 0 00 0223466789999999999999999
Q ss_pred HHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 127 KDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 127 ~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
..+|.+|.....+.+...... .|||+|.+...|..|...++|..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~~-iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSG-IAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCCc-eeEEecchhhhhHHHhhhhccceec
Confidence 999999999888887765543 7999999999999999999998886
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=141.10 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccce
Q 023767 103 GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 103 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
++...+...|.|.||.+.++.++|..+|++||.|.+|.|.++..+ +||||.|....+|++|++.|+|.+++|+++
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 445567889999999999999999999999999999999988755 599999999999999999999999999544
No 33
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.85 E-value=1.9e-20 Score=140.86 Aligned_cols=82 Identities=38% Similarity=0.583 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
....+|.|.||.+.++.++|+.+|++||.|-+|.|+. +++++|||||.|.+..+|+.|++.|+|.+|+|+.|.|++|
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3467899999999999999999999999999999965 6789999999999999999999999999999999999998
Q ss_pred cCCCC
Q 023767 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.....
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 86543
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=2.8e-19 Score=159.54 Aligned_cols=78 Identities=23% Similarity=0.444 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
..++|||+||++++++++|+++|+.||+|..+.|.. ++.++|||||+|.+.++|..|+..||+..|.|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 45789999999999999999999999999999999999987
Q ss_pred C
Q 023767 82 G 82 (277)
Q Consensus 82 ~ 82 (277)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 4
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=5.6e-20 Score=156.86 Aligned_cols=174 Identities=21% Similarity=0.326 Sum_probs=132.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
.|||+||.+++++++|+.+|++||.|..|.++. ++.++||+||+|.+.++|.+|+..|||..|.|+.|.|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 389999999999999999999999999999954 68999999999999999999999999999999999998766443
Q ss_pred CCCCC------CC----CCCCCCCCC------------------------------------------CCCCCC------
Q 023767 85 RHSSS------MD----RYSSYSSGG------------------------------------------SRGVSR------ 106 (277)
Q Consensus 85 ~~~~~------~~----~~~~~~~~~------------------------------------------~~~~~~------ 106 (277)
..... .+ .+..+...+ ....+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 32211 00 000000000 000011
Q ss_pred -CCCceEEEeCCC--CCCC--------HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 107 -RSDYRVLVTGLP--SSAS--------WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 107 -~~~~~l~v~~l~--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
.+..++.+.|+= ...| .++|.+.+.++|.|+.|.|..+.. |+.||.|.+.+.|..|+..|||.|+.|+
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~gr 518 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFAGR 518 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhccc
Confidence 334456666652 1122 468889999999998888877765 7999999999999999999999999998
Q ss_pred ceeeEEE
Q 023767 176 FSRSYVR 182 (277)
Q Consensus 176 ~~~~~i~ 182 (277)
.++..+-
T Consensus 519 ~Ita~~~ 525 (549)
T KOG0147|consen 519 MITAKYL 525 (549)
T ss_pred eeEEEEe
Confidence 7766543
No 36
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.2e-19 Score=154.77 Aligned_cols=167 Identities=22% Similarity=0.354 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
++...|||.||+++++..+|..+|+.||+|..|++..+ ..++|| ||+|.+++.|.+|+..|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45566999999999999999999999999999999653 347899 9999999999999999999999999999999886
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhH
Q 023767 83 GRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDD 159 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~ 159 (277)
........ .. .......++|.+++.+++++.|.++|..+|.|..+.++.+.. .+|+||+|++.++
T Consensus 153 ~~er~~~~-----------~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~ 220 (369)
T KOG0123|consen 153 KEEREAPL-----------GE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPED 220 (369)
T ss_pred hhhhcccc-----------cc-hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhH
Confidence 54322110 01 223356899999999999999999999999999999987654 3699999999999
Q ss_pred HHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 160 MKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
|..|+..|++..+.+ ..+.|..+.
T Consensus 221 a~~av~~l~~~~~~~----~~~~V~~aq 244 (369)
T KOG0123|consen 221 AKKAVETLNGKIFGD----KELYVGRAQ 244 (369)
T ss_pred HHHHHHhccCCcCCc----cceeecccc
Confidence 999999999999987 445554443
No 37
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.83 E-value=2e-19 Score=136.88 Aligned_cols=170 Identities=21% Similarity=0.317 Sum_probs=129.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCC----CcEEEEEEcChHHHHHHHHhcCCcccC---CceEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRP----PGYAFLEFEDYRDAEDAIRGRDGYNFD---GYRLRV 77 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~----~g~~fV~f~~~~~a~~A~~~l~~~~~~---g~~l~v 77 (277)
.-+||||.+||.++...+|+.||..|--.+...|+.+.+. +.+|||.|.+..+|.+|+..|||+.|+ +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4689999999999999999999999976777777665433 489999999999999999999999996 788999
Q ss_pred EEccCCCCCCCCCCCC-----CCCC---------------------------CCCC-CC---------------------
Q 023767 78 ELAHGGRRHSSSMDRY-----SSYS---------------------------SGGS-RG--------------------- 103 (277)
Q Consensus 78 ~~a~~~~~~~~~~~~~-----~~~~---------------------------~~~~-~~--------------------- 103 (277)
++++............ ..+. ..+. ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 9998653322110000 0000 0000 00
Q ss_pred ------------CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCe
Q 023767 104 ------------VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (277)
Q Consensus 104 ------------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~ 171 (277)
.......+|||.||.+++++++|+++|+.|.....+.|.....--.||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 00012348999999999999999999999998877777655444489999999999999999999988
Q ss_pred ecc
Q 023767 172 FRN 174 (277)
Q Consensus 172 ~~g 174 (277)
+..
T Consensus 273 ~s~ 275 (284)
T KOG1457|consen 273 LSS 275 (284)
T ss_pred ecc
Confidence 854
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=6.3e-21 Score=162.57 Aligned_cols=172 Identities=20% Similarity=0.278 Sum_probs=139.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
+++.+|||+.-|+..+++.+|.++|+.+|.|.+|.++. ++.++|.|||+|.+.+.+-.|+. |.|..+.|.+|.|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 36778899999999999999999999999999999965 56789999999999999999997 999999999999998
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEe
Q 023767 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYT 155 (277)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~ 155 (277)
....+..... ....+.+ .....+...|||+||..++++++|..+|..||.|..|.+..+. ..||+||+|.
T Consensus 255 sEaeknr~a~--~s~a~~~----k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~ 328 (549)
T KOG0147|consen 255 SEAEKNRAAN--ASPALQG----KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFV 328 (549)
T ss_pred cHHHHHHHHh--ccccccc----cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEe
Confidence 7754322110 0000110 1111122339999999999999999999999999999998775 3369999999
Q ss_pred chhHHHHHHHhcCCCeecccceeeEE
Q 023767 156 SYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 156 ~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
+.++|.+|+..|||.++.|+.+.+-+
T Consensus 329 ~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 329 NKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred cHHHHHHHHHHhccceecCceEEEEE
Confidence 99999999999999999997665433
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.83 E-value=5.3e-20 Score=151.59 Aligned_cols=164 Identities=19% Similarity=0.304 Sum_probs=137.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023767 2 SSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 2 ~~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (277)
...+.++|||++|+++++++.|++.|.+||+|.++.++. ++.+++|+||+|.+++.+.+++. .....|+|+.|.+.
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccce
Confidence 445789999999999999999999999999999999965 56889999999999999999988 55678999999999
Q ss_pred EccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEE
Q 023767 79 LAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDY 154 (277)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f 154 (277)
.|.+......... .....+|||++||.++++++|++.|.+||.|..+.++.+... +|+||.|
T Consensus 81 ~av~r~~~~~~~~--------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~ 146 (311)
T KOG4205|consen 81 RAVSREDQTKVGR--------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTF 146 (311)
T ss_pred eccCccccccccc--------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEe
Confidence 9887654333211 114679999999999999999999999999999888877654 5999999
Q ss_pred echhHHHHHHHhcCCCeecccceeeEE
Q 023767 155 TSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 155 ~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
++.+.+.+++. ..-..++|+.+.+..
T Consensus 147 ~~e~sVdkv~~-~~f~~~~gk~vevkr 172 (311)
T KOG4205|consen 147 DSEDSVDKVTL-QKFHDFNGKKVEVKR 172 (311)
T ss_pred ccccccceecc-cceeeecCceeeEee
Confidence 99999998885 677777775444433
No 40
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.6e-19 Score=141.23 Aligned_cols=135 Identities=23% Similarity=0.349 Sum_probs=111.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 1 ~~~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
|++...+||||+||...+||+-|..||.+.|.|..++|..+ .|.|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788999999999999999999999999999999988743 4556665
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEec
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~ 156 (277)
..+...+ .+.......+||+.|...++-++|++.|.+||+|..+.|++|.++ ||+||.|.+
T Consensus 49 ~~p~nQs---------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~ 113 (321)
T KOG0148|consen 49 TAPGNQS---------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPN 113 (321)
T ss_pred cCcccCC---------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccc
Confidence 5431111 111222568999999999999999999999999999999988765 599999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.++|+.||..|||.+|++ +.|+.-.+
T Consensus 114 k~dAEnAI~~MnGqWlG~----R~IRTNWA 139 (321)
T KOG0148|consen 114 KEDAENAIQQMNGQWLGR----RTIRTNWA 139 (321)
T ss_pred hHHHHHHHHHhCCeeecc----ceeecccc
Confidence 999999999999999998 45555444
No 41
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=146.90 Aligned_cols=181 Identities=22% Similarity=0.314 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCc--eEEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGY--RLRVEL 79 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~-~~~~g~--~l~v~~ 79 (277)
+.++|||+-|++.+||.+|+++|.+||.|++|.|+. ++.++|+|||+|.+.|.|..||+.||| .++.|+ +|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999976 568899999999999999999999999 456665 699999
Q ss_pred ccCCCCCCCC-----------------------------------------CC---------------------------
Q 023767 80 AHGGRRHSSS-----------------------------------------MD--------------------------- 91 (277)
Q Consensus 80 a~~~~~~~~~-----------------------------------------~~--------------------------- 91 (277)
|...+..... ..
T Consensus 203 ADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~ 282 (510)
T KOG0144|consen 203 ADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAA 282 (510)
T ss_pred cccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhh
Confidence 9844321100 00
Q ss_pred ------------CC------CCCCCC--C--------------------------------CCC----------------
Q 023767 92 ------------RY------SSYSSG--G--------------------------------SRG---------------- 103 (277)
Q Consensus 92 ------------~~------~~~~~~--~--------------------------------~~~---------------- 103 (277)
.. .++.+. . ...
T Consensus 283 ~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa 362 (510)
T KOG0144|consen 283 AATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAA 362 (510)
T ss_pred hcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccc
Confidence 00 000000 0 000
Q ss_pred -----------C---------------------------------------------CCCCCceEEEeCCCCCCCHHHHH
Q 023767 104 -----------V---------------------------------------------SRRSDYRVLVTGLPSSASWQDLK 127 (277)
Q Consensus 104 -----------~---------------------------------------------~~~~~~~l~v~~l~~~~~~~~l~ 127 (277)
+ .-+.+..+||.+||.+.-+.+|-
T Consensus 363 ~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~ 442 (510)
T KOG0144|consen 363 SLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLI 442 (510)
T ss_pred cccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHH
Confidence 0 00124589999999999999999
Q ss_pred HHHHhcCCeeEEEEEecCCCc----EEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023767 128 DHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 128 ~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..|..||.|+..++..++.++ |+||.|++..+|..||..|||..++.+...+.+.++.
T Consensus 443 ~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 443 ATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred HHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999998876 8999999999999999999999999976666555443
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.80 E-value=6.6e-19 Score=131.23 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
..+++|||+|||+++|+++|+++|++||+|..|.|+. ++.+++||||+|.+.++|+.|++.||+..|.|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999964 5678999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023767 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
......
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 865543
No 43
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=2.7e-17 Score=133.04 Aligned_cols=178 Identities=19% Similarity=0.232 Sum_probs=136.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEee--cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDLK--IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~~~--~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~ 73 (277)
.-++.|||.|||.++|.+++.++|++||-|.. |+|. ..|..+|=|++.|...+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34667999999999999999999999997765 4442 3578899999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCCCC----------------CCCCCCCC--CCCCCCCCceEEEeCCCC----CCC-------HH
Q 023767 74 RLRVELAHGGRRHSSSMDRY----------------SSYSSGGS--RGVSRRSDYRVLVTGLPS----SAS-------WQ 124 (277)
Q Consensus 74 ~l~v~~a~~~~~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~l~v~~l~~----~~~-------~~ 124 (277)
.|+|+.|+-.....-....- ..+.-.+. .+.......+|.+.|+-. ..+ .+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 99999998543222111000 00000011 122233467888888732 122 56
Q ss_pred HHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 125 DLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 125 ~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
+|.+.+.+||.|..|.|....+.|.+.|.|.+.++|..+|..|+|..++|+.+...|
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 788889999999999999888889999999999999999999999999996555444
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=7.9e-19 Score=122.15 Aligned_cols=79 Identities=37% Similarity=0.565 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+.++||||+||+..++|++|.+||+.+|+|..|.| ..+..+.|||||+|...++|..|+..+++..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 67899999999999999999999999999999999 335678999999999999999999999999999999999996
Q ss_pred cC
Q 023767 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
.+
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 64
No 45
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=5e-18 Score=132.70 Aligned_cols=171 Identities=21% Similarity=0.328 Sum_probs=134.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCc--eEEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGY--RLRVEL 79 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~-~~~~g~--~l~v~~ 79 (277)
+.++||||-|...-.|||++.+|..||+|.+|.+.. ++.++|+|||+|.+..+|..||..|+| ..+.|. .|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568899999999999999999999999999999965 678899999999999999999999999 455554 599999
Q ss_pred ccCCCCCC------------------------------------------------------------------------
Q 023767 80 AHGGRRHS------------------------------------------------------------------------ 87 (277)
Q Consensus 80 a~~~~~~~------------------------------------------------------------------------ 87 (277)
+...+...
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 88221000
Q ss_pred ----CCCCCC------------------CCCC------CC------------CCC-------------------------
Q 023767 88 ----SSMDRY------------------SSYS------SG------------GSR------------------------- 102 (277)
Q Consensus 88 ----~~~~~~------------------~~~~------~~------------~~~------------------------- 102 (277)
...... ..+. .+ ..+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 000000 0000 00 000
Q ss_pred ------------CC---------CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEech
Q 023767 103 ------------GV---------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSY 157 (277)
Q Consensus 103 ------------~~---------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~ 157 (277)
.+ .-+.+++|||=.||.+..+.+|.++|-.||.|+..++..|..+. |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00 01247899999999999999999999999999999988877654 999999999
Q ss_pred hHHHHHHHhcCCCeeccc
Q 023767 158 DDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 158 ~~a~~a~~~l~g~~~~g~ 175 (277)
..|+.||..|||..|+=+
T Consensus 338 ~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhHHHHHHHhcchhhhhh
Confidence 999999999999999764
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=5.4e-17 Score=128.84 Aligned_cols=83 Identities=36% Similarity=0.589 Sum_probs=77.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
++|=+||||+-|+.+++|..|+..|+.||+|+.|.|+. +++++|||||+|.++.+...|++..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999999999954 789999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023767 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
-.....
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 776543
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=6.5e-17 Score=141.96 Aligned_cols=177 Identities=19% Similarity=0.240 Sum_probs=137.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
...+.|+|+|||..+..++|..+|..||+|..|.|+.. -.-++|+|.++.+|..|+..|....+...+|.+.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 45688999999999999999999999999999976632 235899999999999999999999999999999998754
Q ss_pred CCC--CCCCCC-----CC----------CCCCC---CCC----------CCCCCCCceEEEeCCCCCCCHHHHHHHHHhc
Q 023767 84 RRH--SSSMDR-----YS----------SYSSG---GSR----------GVSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (277)
Q Consensus 84 ~~~--~~~~~~-----~~----------~~~~~---~~~----------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (277)
.-. +...+. .. ...+. ... .......++|||.||++.++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 332 111000 00 00000 000 0011223449999999999999999999999
Q ss_pred CCeeEEEEEecCCC-------cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 134 GDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 134 g~v~~~~~~~~~~~-------~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
|.|..+.|...... |||||+|.+.++|+.|+..|+|..++|+.+.+.|..
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99999988765443 799999999999999999999999999766665544
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.72 E-value=5.9e-17 Score=129.01 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..|+. |||..|.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999998877678999999999999999996 99999999999999988654
Q ss_pred C
Q 023767 85 R 85 (277)
Q Consensus 85 ~ 85 (277)
.
T Consensus 82 ~ 82 (260)
T PLN03120 82 L 82 (260)
T ss_pred C
Confidence 4
No 49
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.71 E-value=6e-16 Score=127.80 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=140.2
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 6 SRTLYVGNLPG-DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 6 s~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
+.+|.|.||.. .+|.+-|..+|.-||+|..|+|...+ +..|+|+|.+..+|..|++.|+|..|.|+.|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 68899999965 58999999999999999999997655 4789999999999999999999999999999999999765
Q ss_pred CCCCCCC-----CCCCCCCC----------CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcE
Q 023767 85 RHSSSMD-----RYSSYSSG----------GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMT 149 (277)
Q Consensus 85 ~~~~~~~-----~~~~~~~~----------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 149 (277)
...+... ....+... ..+..-.++..++++.|+|..+++++|+++|..-|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 4433211 11111111 11122335678999999999999999999999999887777666666669
Q ss_pred EEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 150 GIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 150 ~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
|++++++.++|..|+-.++...+++. -.++|...
T Consensus 455 al~q~~sveeA~~ali~~hnh~lgen---~hlRvSFS 488 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLGEN---HHLRVSFS 488 (492)
T ss_pred eecccCChhHhhhhccccccccCCCC---ceEEEEee
Confidence 99999999999999999999888763 34555443
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=3e-17 Score=107.66 Aligned_cols=68 Identities=41% Similarity=0.748 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023767 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 9 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (277)
|||+|||+++|+++|+++|++||.|..+.+.. ++..+++|||+|.+.++|..|++.|||..|.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467789999999999999999999999999999874
No 51
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.70 E-value=1.1e-16 Score=142.76 Aligned_cols=128 Identities=22% Similarity=0.271 Sum_probs=99.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
..++|||+||++++++++|+++|+.| |+|+.|.+. ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999986
Q ss_pred CCCCCCCC-CCCCCC-------CCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCee
Q 023767 83 GRRHSSSM-DRYSSY-------SSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVC 137 (277)
Q Consensus 83 ~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 137 (277)
.....-.. .+.... ..........+...++++.|+++.++++.+.++|...|.|.
T Consensus 307 ~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 54321100 000000 00000111223578999999999999999999999988754
No 52
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.70 E-value=6e-16 Score=130.80 Aligned_cols=164 Identities=24% Similarity=0.323 Sum_probs=126.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
....|.+.+|||++|++||.++|+.++ |+.+.+.. +++..|-|||+|.++|++++|++ .+...+..+-|.|-.+...
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCc
Confidence 456788999999999999999999995 78877765 58999999999999999999999 8888999999999888765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEE---ecCCCcEEEEEEechhH
Q 023767 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVF---RDRGGMTGIVDYTSYDD 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~---~~~~~~~~fV~f~~~~~ 159 (277)
.....-. ..+. ........|.+.+||+.++++||.++|.-.-.|.. +.+. ..+.++-|||+|++++.
T Consensus 87 e~d~~~~-------~~g~--~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ 157 (510)
T KOG4211|consen 87 EADWVMR-------PGGP--NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQES 157 (510)
T ss_pred ccccccc-------CCCC--CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHH
Confidence 4322110 0000 00134678999999999999999999997655544 2232 33456789999999999
Q ss_pred HHHHHHhcCCCeecccceeeEEEEe
Q 023767 160 MKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
|+.|+. -|...|.. +.|.|.
T Consensus 158 ae~Al~-rhre~iGh----RYIEvF 177 (510)
T KOG4211|consen 158 AEIALG-RHRENIGH----RYIEVF 177 (510)
T ss_pred HHHHHH-HHHHhhcc----ceEEee
Confidence 999996 56666655 455554
No 53
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.70 E-value=1.8e-15 Score=126.08 Aligned_cols=170 Identities=24% Similarity=0.349 Sum_probs=132.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
-.+.+||+|||+++.+.+|+.||. +.|+|+.|.|.. .++++|+|.|||+++|.+++|++.||...+.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 345699999999999999999998 569999999976 57889999999999999999999999999999999998765
Q ss_pred CCCCCC-----------------------------------------CCCCCCC-------------------CCCCC--
Q 023767 82 GGRRHS-----------------------------------------SSMDRYS-------------------SYSSG-- 99 (277)
Q Consensus 82 ~~~~~~-----------------------------------------~~~~~~~-------------------~~~~~-- 99 (277)
...... ...++.. .|...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 321000 0000000 00000
Q ss_pred ---CCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 100 ---GSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 100 ---~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
......++-..++||.||.+.+....|.+.|.-.|.|+.+.+-.++. .++|.++|.++-+|.+||..|++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00111234467899999999999999999999999999998876654 369999999999999999999975544
Q ss_pred c
Q 023767 174 N 174 (277)
Q Consensus 174 g 174 (277)
.
T Consensus 283 ~ 283 (608)
T KOG4212|consen 283 D 283 (608)
T ss_pred c
Confidence 4
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=2.4e-15 Score=122.66 Aligned_cols=78 Identities=23% Similarity=0.437 Sum_probs=71.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
=+.|||..+.++++++||+.+|+.||+|..|.|.. ...++||+||+|.+..+...|+..||-..++|+.|.|..+..
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 46799999999999999999999999999999943 457899999999999999999999999999999999987763
Q ss_pred C
Q 023767 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
+
T Consensus 290 P 290 (544)
T KOG0124|consen 290 P 290 (544)
T ss_pred C
Confidence 3
No 55
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=7.5e-18 Score=124.44 Aligned_cols=83 Identities=30% Similarity=0.522 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+++..|||||||+.+||.||.-+|++||+|.+|.|. .||+++||||+.|+++.+...|+..|||..|.|+.|.|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 578889999999999999999999999999999994 47899999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 023767 81 HGGRRH 86 (277)
Q Consensus 81 ~~~~~~ 86 (277)
.....+
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 876654
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.67 E-value=6.2e-16 Score=121.19 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
...+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |+|..|.++.|.|..+....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcccc
Confidence 45799999999999999999999999999999999888888999999999999999997 99999999999999988654
Q ss_pred C
Q 023767 85 R 85 (277)
Q Consensus 85 ~ 85 (277)
.
T Consensus 83 ~ 83 (243)
T PLN03121 83 D 83 (243)
T ss_pred c
Confidence 3
No 57
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1e-15 Score=102.75 Aligned_cols=80 Identities=36% Similarity=0.468 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
-+..|||.|||+++|.+++.+||..||.|..|.+-.++..+|.|||.|++..+|.+|+..|+|..+.++.|.|-+.++..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 35679999999999999999999999999999997778889999999999999999999999999999999999987543
No 58
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.2e-15 Score=132.01 Aligned_cols=171 Identities=20% Similarity=0.289 Sum_probs=128.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
..+.|||++||..++++++.++...||+++.+.+.. ++.++||||.+|.++..+..|++.|||+.+.+..|.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 467899999999999999999999999999998844 56889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCC-CC-CCCCCCCC--CCCCCCCceEEEeCCC--CCC-C-------HHHHHHHHHhcCCeeEEEEEec-C-
Q 023767 82 GGRRHSSSMDR-YS-SYSSGGSR--GVSRRSDYRVLVTGLP--SSA-S-------WQDLKDHMRRAGDVCFSQVFRD-R- 145 (277)
Q Consensus 82 ~~~~~~~~~~~-~~-~~~~~~~~--~~~~~~~~~l~v~~l~--~~~-~-------~~~l~~~f~~~g~v~~~~~~~~-~- 145 (277)
........... .. ....-... ...-.+...|.+.|+- .++ . .++|+..|.+||.|..|.+..+ .
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65443322111 00 01110010 1122233444444431 111 1 2456667779999999999877 2
Q ss_pred -----CCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 146 -----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 146 -----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
..|..||+|.+.++++.|+..|+|.+++|+
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 235899999999999999999999999995
No 59
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.64 E-value=5.7e-15 Score=123.13 Aligned_cols=141 Identities=28% Similarity=0.459 Sum_probs=109.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
..+|||+|||+.+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..|++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 48999999999999999999999999999999855 468899999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCC-CCC--CCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC
Q 023767 83 -GRRHSSSMDR-YSS--YSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG 146 (277)
Q Consensus 83 -~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 146 (277)
.......... ... ................+++.+++..+...++...|..+|.+..+.+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1111110000 000 000111223345678899999999999999999999999996666654443
No 60
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.64 E-value=1.1e-15 Score=126.21 Aligned_cols=176 Identities=17% Similarity=0.184 Sum_probs=134.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCceEEEEEc
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~a 80 (277)
..+++.|.+.|||++++|++|..++.+||.|..+.+.. .+..|||+|.++++|...+..+.. -.+.|++|.|+++
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lk---GknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLK---GKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeec---cchhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 35899999999999999999999999999999998863 356899999999999986654444 3567999999987
Q ss_pred cCCCCCCCCCC-----------------CCCCCCC-CC--CCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Q 023767 81 HGGRRHSSSMD-----------------RYSSYSS-GG--SRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 140 (277)
Q Consensus 81 ~~~~~~~~~~~-----------------~~~~~~~-~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~ 140 (277)
....-...... ....... .. .....+.+.-.++|+++-+.++.+.|.++|.+||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 74322211100 0000000 00 0112223345788899999999999999999999999999
Q ss_pred EEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 141 VFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 141 ~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....++..|.|+|.+.+.|..|...|+|..|-+..++..|
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrI 222 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRI 222 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEe
Confidence 88888888899999999999999999999999765444433
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.5e-15 Score=117.58 Aligned_cols=80 Identities=38% Similarity=0.602 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
.++++|-|.||+.++++++|++||.+||.|..|.| +.++.++|||||.|.+.++|.+||..|||.-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 57899999999999999999999999999999999 447899999999999999999999999999999999999999
Q ss_pred cCC
Q 023767 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 863
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=1.3e-15 Score=99.83 Aligned_cols=68 Identities=32% Similarity=0.664 Sum_probs=60.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEE
Q 023767 9 LYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLR 76 (277)
Q Consensus 9 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (277)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 45689999999999999999999999999999874
No 63
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=4.2e-15 Score=126.26 Aligned_cols=81 Identities=31% Similarity=0.495 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVEL 79 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (277)
..++|||+|||+.+|+++|+++|++||+|+.|.|+. ++.+++||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56778999999999999999999999998876 6899999
Q ss_pred ccCCCC
Q 023767 80 AHGGRR 85 (277)
Q Consensus 80 a~~~~~ 85 (277)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886543
No 64
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.60 E-value=7.7e-14 Score=114.24 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=137.8
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 4 RSSRTLYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~s~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
-+...+.|.+|... ++.+.|.++|..||.|+.|+++.++ .|.|+|++.+...++.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 35688999999775 6888999999999999999998776 68899999999999999999999999999999999886
Q ss_pred CCCCCCC---------------CCCCCCCCCCCCC--CCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEec
Q 023767 83 GRRHSSS---------------MDRYSSYSSGGSR--GVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRD 144 (277)
Q Consensus 83 ~~~~~~~---------------~~~~~~~~~~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~ 144 (277)
.-..+.. ......|..+... ..-..+.+.|+.-|.|..+||+.|.++|..-+. ...+.+...
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~ 442 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPL 442 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecc
Confidence 6443321 0111122222221 223457889999999999999999999998774 455666654
Q ss_pred CCC--cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 145 RGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 145 ~~~--~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
+.. ..+.+||++..+|.+||..+|...+.+.......
T Consensus 443 kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~Pf 481 (494)
T KOG1456|consen 443 KSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPF 481 (494)
T ss_pred cccccccceeeeehHHHHHHHHHHhccccccCCCCCCCe
Confidence 433 3789999999999999999999999875443333
No 65
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=1.8e-15 Score=116.64 Aligned_cols=76 Identities=26% Similarity=0.413 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
-++||||+|+|.++.+.|+++|++||+|++..|. .+++++||+||+|.+.++|..|++.- +-.|+|+...|.+|-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 3689999999999999999999999999998884 46899999999999999999999944 4689999999999875
No 66
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=2.5e-15 Score=105.71 Aligned_cols=79 Identities=24% Similarity=0.452 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
-.|||+++.+.+|+++|.+.|..||+|+.|.|.. ++..+|||+|+|++.++|++|+..|||..|.|+.|.|.|+-..
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 3699999999999999999999999999999965 6788999999999999999999999999999999999998854
Q ss_pred CC
Q 023767 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
.+
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=120.27 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
...+.|+|.|||+..-+-||+.+|++||.|.+|.|+. +..+||||||+|++.+||++|-++|||..+.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4567899999999999999999999999999999976 457899999999999999999999999999999999999885
Q ss_pred C
Q 023767 83 G 83 (277)
Q Consensus 83 ~ 83 (277)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 68
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.59 E-value=7.8e-14 Score=103.99 Aligned_cols=80 Identities=25% Similarity=0.365 Sum_probs=70.1
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
....++|||+|||..+++++|+++|.+||.|..+.++.+.. .+||||+|.+.++|+.|++.||+..|+| ..|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G----r~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG----RHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC----EEE
Confidence 34577999999999999999999999999999999987754 3699999999999999999999999999 566
Q ss_pred EEeecCCC
Q 023767 182 RVREYDSR 189 (277)
Q Consensus 182 ~~~~~~~~ 189 (277)
.|.....+
T Consensus 107 ~V~~a~~~ 114 (144)
T PLN03134 107 RVNPANDR 114 (144)
T ss_pred EEEeCCcC
Confidence 67665443
No 69
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=1.3e-13 Score=109.86 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=66.9
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+-.+|||.-|++++++..|+..|..||+|..|.|+.+.- .|||||+|++..++..|.+..+|.+|+|+ .|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr----ri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR----RIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc----EEE
Confidence 5678999999999999999999999999999999987744 46999999999999999999999999995 444
Q ss_pred Eee
Q 023767 183 VRE 185 (277)
Q Consensus 183 ~~~ 185 (277)
|+.
T Consensus 175 VDv 177 (335)
T KOG0113|consen 175 VDV 177 (335)
T ss_pred EEe
Confidence 543
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=9.9e-15 Score=123.48 Aligned_cols=79 Identities=19% Similarity=0.328 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcCh--HHHHHHHHhcCCcccCCceEEEEEc
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY--RDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~--~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+....+||||||++.+|+++|..+|..||.|..|.|+... .+|||||+|... .++.+||..|||..+.|+.|.|..|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3467889999999999999999999999999999998532 399999999987 7899999999999999999999999
Q ss_pred cC
Q 023767 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 84
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.57 E-value=2.1e-14 Score=94.05 Aligned_cols=70 Identities=43% Similarity=0.772 Sum_probs=64.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~-~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (277)
+|+|+|||+.+++++|+++|.+||+|..+.+..+ +.+.++|||+|.+.++|..|+..|++..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 5899999999999999999999999999988654 456799999999999999999999999999999886
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-14 Score=110.56 Aligned_cols=84 Identities=31% Similarity=0.551 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
...++||||+|...+|+.-|...|=+||.|.+|.++. +++++|||||+|...|+|.+||..||+..|.|+.|.|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4578999999999999999999999999999999976 5688999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023767 81 HGGRRHS 87 (277)
Q Consensus 81 ~~~~~~~ 87 (277)
.+.+...
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 9876544
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=2.4e-13 Score=89.47 Aligned_cols=72 Identities=40% Similarity=0.739 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC--CCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~--~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
+|+|+|||+.+++++|.++|+.||.|..+.+.... .+.++|||+|.+.++|..|+..+++..+.|..|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999997543 4589999999999999999999999999999998864
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=2e-13 Score=89.32 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=59.1
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 112 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
|||+|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|+.|+..|||..+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 79999999999999999999999999999988622 25999999999999999999999999994
No 75
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.9e-13 Score=89.14 Aligned_cols=68 Identities=41% Similarity=0.710 Sum_probs=62.2
Q ss_pred EcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023767 11 VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 11 V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (277)
|+|||..+++++|+++|++||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999965 35678999999999999999999999999999998873
No 76
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.48 E-value=2.4e-13 Score=84.79 Aligned_cols=56 Identities=36% Similarity=0.622 Sum_probs=51.2
Q ss_pred HHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 23 VEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 23 l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
|+++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 699999999999999999999999999999999985
No 77
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=4.8e-13 Score=115.38 Aligned_cols=79 Identities=33% Similarity=0.644 Sum_probs=74.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
..|||||||+++++++|..+|+..|.|..++++. +|.++||||++|.++++|..|++.|||..+.|+.|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 6799999999999999999999999999999999999998865
Q ss_pred CC
Q 023767 84 RR 85 (277)
Q Consensus 84 ~~ 85 (277)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 78
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.3e-13 Score=113.03 Aligned_cols=77 Identities=29% Similarity=0.511 Sum_probs=71.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
.-+.|||.||+.++|++.|+++|++||.|+.|+.+ +.||||.|.+-++|.+||+.|||..|+|..|.|.+|++..
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 35789999999999999999999999999999877 5699999999999999999999999999999999999765
Q ss_pred CC
Q 023767 85 RH 86 (277)
Q Consensus 85 ~~ 86 (277)
..
T Consensus 333 k~ 334 (506)
T KOG0117|consen 333 KK 334 (506)
T ss_pred hh
Confidence 43
No 79
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=5.3e-12 Score=103.62 Aligned_cols=167 Identities=15% Similarity=0.215 Sum_probs=126.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH--hcCCcccCCceEEEEEcc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR--GRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~--~l~~~~~~g~~l~v~~a~ 81 (277)
.++-.|.|.+|-..+++.+|.+-++.||+|..|.++.. +..|.|+|++.+.|+.++. .-+...+.|+.--+.++.
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NySt 105 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYST 105 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccchhhheehhccCcccccCchhhcccch
Confidence 46678999999999999999999999999999988642 5689999999999999875 234466778887777765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhH
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL--VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDD 159 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~ 159 (277)
....... + .....+...|. |-|--+.+|.+.|-.++...|+|..|.|++. ++-.|.|||++.+.
T Consensus 106 sq~i~R~-----------g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~ 171 (494)
T KOG1456|consen 106 SQCIERP-----------G--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEV 171 (494)
T ss_pred hhhhccC-----------C--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHH
Confidence 4332111 0 01111233333 4455667899999999999999999998887 44589999999999
Q ss_pred HHHHHHhcCCCeecccceeeEEEEeecCCC
Q 023767 160 MKYAIRKLDRSEFRNAFSRSYVRVREYDSR 189 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~ 189 (277)
|++|...|||..|-... +.+.++.+++.
T Consensus 172 AqrAk~alNGADIYsGC--CTLKIeyAkP~ 199 (494)
T KOG1456|consen 172 AQRAKAALNGADIYSGC--CTLKIEYAKPT 199 (494)
T ss_pred HHHHHhhcccccccccc--eeEEEEecCcc
Confidence 99999999999985543 44555666553
No 80
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=8.3e-13 Score=93.14 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=69.0
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
..++.|||.++...+++++|.+.|..||+|.++++..+..+| ||+|+|++.++|++|+..+||..+.| ..|.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~----q~v~ 145 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG----QNVS 145 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC----Ccee
Confidence 458999999999999999999999999999999999887664 99999999999999999999999999 5666
Q ss_pred Eeec
Q 023767 183 VREY 186 (277)
Q Consensus 183 ~~~~ 186 (277)
|+..
T Consensus 146 VDw~ 149 (170)
T KOG0130|consen 146 VDWC 149 (170)
T ss_pred EEEE
Confidence 6654
No 81
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=6.9e-12 Score=107.24 Aligned_cols=163 Identities=23% Similarity=0.323 Sum_probs=114.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee--c----CCCCCc---EEEEEEcChHHHHHHHHhcCCcccCCceE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK--I----PPRPPG---YAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~--~----~~~~~g---~~fV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (277)
=+++||||+||++++|++|...|..||.+.- .++ . --.++| |+|+.|+++.++...+....- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 4678999999999999999999999997543 332 1 113356 999999999998887654322 33344
Q ss_pred EEEEccCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCC---
Q 023767 76 RVELAHGGRRHSSSMDRY-----SSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMR-RAGDVCFSQVFRDRG--- 146 (277)
Q Consensus 76 ~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~~~--- 146 (277)
.+..+.+.........+. ..|... ...+..+..+|||++||-.++.++|..+|. -||.|..+.|..|+.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d--~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLD--HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhc--cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 444433332222111100 011111 234456788999999999999999999999 799999999988843
Q ss_pred -CcEEEEEEechhHHHHHHHh----cCCCeec
Q 023767 147 -GMTGIVDYTSYDDMKYAIRK----LDRSEFR 173 (277)
Q Consensus 147 -~~~~fV~f~~~~~a~~a~~~----l~g~~~~ 173 (277)
.|-|-|.|.+...-.+||.+ |+..+++
T Consensus 412 PkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred CCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 35788999999999999875 4444444
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.40 E-value=1.9e-11 Score=102.33 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
...+||+||...+..+.|++.|.-.|.|+.|.+-. .+.++|||.|+|.++-.|..||..|++.-++.++..+.+
T Consensus 215 ~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 215 HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred cceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 35799999999999999999999999999988844 457889999999999999999999997776666666655
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=4.6e-13 Score=109.04 Aligned_cols=79 Identities=27% Similarity=0.412 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
-|.++|||..|.|-+|+++|..+|+.||.|..|.+.. ++.+..||||+|.+.++|.+|+-.|++..|+++.|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 3789999999999999999999999999999999954 7788899999999999999999999999999999999998
Q ss_pred cC
Q 023767 81 HG 82 (277)
Q Consensus 81 ~~ 82 (277)
+.
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 85
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=4.2e-12 Score=101.44 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=65.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
..+|||+||++.+++++|+++|..||+|..|.|..+. ..+||||+|.+.++|..||. |+|..|.|+ .|.|...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr----~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQ----SVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc----eEEEEec
Confidence 5699999999999999999999999999999998876 35799999999999999995 999999994 5555544
No 85
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=8.7e-13 Score=104.81 Aligned_cols=77 Identities=38% Similarity=0.658 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
++++++|+|+||.+.++-.||++.|++||+|+++.+. ++|+||.|.-.++|..|+..|||.+|.|+.|+|+++..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3588999999999999999999999999999999998 78999999999999999999999999999999999886
Q ss_pred CC
Q 023767 83 GR 84 (277)
Q Consensus 83 ~~ 84 (277)
.-
T Consensus 150 rl 151 (346)
T KOG0109|consen 150 RL 151 (346)
T ss_pred cc
Confidence 54
No 86
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=4.9e-12 Score=94.18 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=70.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC-CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
...|||+|||.++.+.+|+++|-+||.|..|.+...+. ..||||+|+++.+|+.||..-+|..++| ..++|+...
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg----~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG----CRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc----ceEEEEecc
Confidence 67899999999999999999999999999999886654 3599999999999999999999999999 688888776
Q ss_pred CCC
Q 023767 188 SRR 190 (277)
Q Consensus 188 ~~r 190 (277)
..+
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 654
No 87
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.9e-12 Score=104.47 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=66.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.......|+|.|||+...+.||..+|.+||.|.+|.|+.+..+ |||||+|++.+||++|-.+|||..+.|+.+.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 3456789999999999999999999999999999999987544 7999999999999999999999999995443
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5.1e-12 Score=109.77 Aligned_cols=172 Identities=21% Similarity=0.297 Sum_probs=133.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-----------C-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKY-----------G-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~-----------G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
.....++|++||+.++++.+..+|..- | .|..+.+. ..++||||+|.+.+.|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 345679999999999999999999753 3 35556554 347899999999999999999 9999999
Q ss_pred CceEEEEEccCCCCCCCCCCCC---CCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC--
Q 023767 72 GYRLRVELAHGGRRHSSSMDRY---SSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG-- 146 (277)
Q Consensus 72 g~~l~v~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-- 146 (277)
|.++.+.-.....+.+...... ..+...............++|++||..+++.++.|+...||.+....+..+..
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9998887655444333221111 11222333344556778999999999999999999999999998887776654
Q ss_pred --CcEEEEEEechhHHHHHHHhcCCCeecccceee
Q 023767 147 --GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRS 179 (277)
Q Consensus 147 --~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~ 179 (277)
.+|||.+|.+......|+..|||..+.+..+.+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 359999999999999999999999999854433
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.34 E-value=5.5e-12 Score=82.46 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=57.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 112 VLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 112 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
|+|+|||+.+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 78999999999999999999999999999998764 35999999999999999999999999984
No 90
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.33 E-value=6.1e-12 Score=112.03 Aligned_cols=80 Identities=30% Similarity=0.507 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 84 (277)
-++|||||.|+..+++.||.++|+.||+|..|+|.. ++++|||.+..-.+|.+|+.+|++..+.++.|+|.|+.+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 478999999999999999999999999999999974 48999999999999999999999999999999999998765
Q ss_pred CCC
Q 023767 85 RHS 87 (277)
Q Consensus 85 ~~~ 87 (277)
...
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 443
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.31 E-value=1.1e-11 Score=102.17 Aligned_cols=174 Identities=18% Similarity=0.203 Sum_probs=117.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc---c-CCeeEEEe-ec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYK---Y-GPIVDIDL-KI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~---~-G~v~~v~~-~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
-.|.+.+||+++|+.|+.++|.+ . |.++.|.+ .. +++..|-|||.|..+++|+.|+. -|...|+-+.|.+-.+
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELFRS 240 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHHHH
Confidence 35678899999999999999963 2 23444444 33 78889999999999999999997 3334444443433222
Q ss_pred cC--------CCCCCC-CCCCCCCCC--CCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCC-eeE--EEEEecC-
Q 023767 81 HG--------GRRHSS-SMDRYSSYS--SGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGD-VCF--SQVFRDR- 145 (277)
Q Consensus 81 ~~--------~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~--~~~~~~~- 145 (277)
.. ...... ......... .+....++.....+|.+.+||+.++.++|.++|..|.. |.. |++..+.
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 10 000000 000011111 12223344455789999999999999999999999984 544 6776554
Q ss_pred --CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023767 146 --GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 146 --~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..|-|||+|.+.++|..|..+.+++.+.. ++|.|..
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~----RYiEvfp 358 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKS----RYIEVFP 358 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhccc----ceEEEee
Confidence 34689999999999999999998888866 4555543
No 92
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=1e-11 Score=81.03 Aligned_cols=58 Identities=28% Similarity=0.462 Sum_probs=51.5
Q ss_pred HHHHHHHhh----ccCCeeEEE-eec---C--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023767 20 MREVEDLFY----KYGPIVDID-LKI---P--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 20 ~~~l~~~F~----~~G~v~~v~-~~~---~--~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (277)
+++|+++|+ .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999985 322 3 678999999999999999999999999999999976
No 93
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=9.2e-12 Score=87.14 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
.+++|||+||..-+++++|-++|.++|+|..|.+-.+..+ |||||+|-..++|+.|+..++|..++. ..|++
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd----r~ir~ 110 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD----RPIRI 110 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc----cceee
Confidence 4789999999999999999999999999999887666544 599999999999999999999999998 67777
Q ss_pred eecCC
Q 023767 184 REYDS 188 (277)
Q Consensus 184 ~~~~~ 188 (277)
+.+..
T Consensus 111 D~D~G 115 (153)
T KOG0121|consen 111 DWDAG 115 (153)
T ss_pred ecccc
Confidence 76653
No 94
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=2.8e-11 Score=81.54 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=68.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
++.-...|||.|||..+|.+++-++|.+||.|..|.|-..+.+ |.|||.|++..+|.+|++.|+|..+++ ..+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~----ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN----RYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC----ceEEE
Confidence 3444678999999999999999999999999999998766555 699999999999999999999999999 56666
Q ss_pred eecC
Q 023767 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
..+.
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 5544
No 95
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.2e-12 Score=116.43 Aligned_cols=158 Identities=20% Similarity=0.278 Sum_probs=132.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~--~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
.++.|||++||+..+++.+|+..|..+|.|..|.|+.+ +....|+||.|.+.+.+-.|...+.+..|..-.+.+.+.+
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999999653 4556799999999999999999999887766666665554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHH
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMK 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~ 161 (277)
+. ....+.++|++|+..+....|..+|..||.|..|.+-.... ||+|+|++...|+
T Consensus 450 ~k----------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~--yayi~yes~~~aq 505 (975)
T KOG0112|consen 450 PK----------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP--YAYIQYESPPAAQ 505 (975)
T ss_pred cc----------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc--ceeeecccCccch
Confidence 31 12256899999999999999999999999999987765544 9999999999999
Q ss_pred HHHHhcCCCeecccceeeEEEEeecC
Q 023767 162 YAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 162 ~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
.|+..|-|..+++.... ++|+.+.
T Consensus 506 ~a~~~~rgap~G~P~~r--~rvdla~ 529 (975)
T KOG0112|consen 506 AATHDMRGAPLGGPPRR--LRVDLAS 529 (975)
T ss_pred hhHHHHhcCcCCCCCcc--ccccccc
Confidence 99999999999885443 6665544
No 96
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=2.5e-11 Score=94.35 Aligned_cols=79 Identities=27% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
....++|.|.||+.++++.+|+++|.+||.|..+.+..++.+| ||||.|...++|++||+.|||.-+++ .-+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~----LIL 261 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN----LIL 261 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce----EEE
Confidence 3456789999999999999999999999999999999998774 99999999999999999999999988 777
Q ss_pred EEeecCC
Q 023767 182 RVREYDS 188 (277)
Q Consensus 182 ~~~~~~~ 188 (277)
+|+..++
T Consensus 262 rvEwskP 268 (270)
T KOG0122|consen 262 RVEWSKP 268 (270)
T ss_pred EEEecCC
Confidence 7777654
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.29 E-value=3.5e-11 Score=94.69 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=65.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
.+++|+|+||++.+++++|+++|..||+|..|.|..+... ++|||+|+++++|+.|+ .|+|..|.+. .|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~----~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ----RVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc----eEEEEeC
Confidence 3689999999999999999999999999999999988644 59999999999999999 5999999994 4555443
No 98
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=9.4e-13 Score=100.52 Aligned_cols=140 Identities=19% Similarity=0.264 Sum_probs=112.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
...+||||+||...|+++-|.+||-+.|+|..|.|+. ++..+ ||||.|.++..+..|+..|||..+.+..|+|.+-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3468999999999999999999999999999999965 34445 99999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechh
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYD 158 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~~~~ 158 (277)
+..-.+ |...++++.+.+.|...|.+..+.+..+..+ .++|+.+.-..
T Consensus 86 G~shap-----------------------------ld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 86 GNSHAP-----------------------------LDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLC 136 (267)
T ss_pred CCCcch-----------------------------hhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhh
Confidence 432111 4456777888888999998888877765542 37888888777
Q ss_pred HHHHHHHhcCCCeec
Q 023767 159 DMKYAIRKLDRSEFR 173 (277)
Q Consensus 159 ~a~~a~~~l~g~~~~ 173 (277)
..-.++...++....
T Consensus 137 ~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 137 AVPFALDLYQGLELF 151 (267)
T ss_pred cCcHHhhhhcccCcC
Confidence 777777766665443
No 99
>PLN03213 repressor of silencing 3; Provisional
Probab=99.28 E-value=2.2e-11 Score=103.50 Aligned_cols=76 Identities=17% Similarity=0.289 Sum_probs=69.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEech--hHHHHHHHhcCCCeecccceeeEEEEeec
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSY--DDMKYAIRKLDRSEFRNAFSRSYVRVREY 186 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~--~~a~~a~~~l~g~~~~g~~~~~~i~~~~~ 186 (277)
...|||+||++.+++++|..+|..||.|..|.|++....+||||+|.+. .++.+||..|||..+.| ..|+|..+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG----R~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG----GRLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC----ceeEEeec
Confidence 5799999999999999999999999999999999777778999999987 68999999999999999 67777766
Q ss_pred CC
Q 023767 187 DS 188 (277)
Q Consensus 187 ~~ 188 (277)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 54
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.25 E-value=7.7e-11 Score=76.83 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=59.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC--CCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR--GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
+|+|.|||..++.++|.++|.+||.+..+.+..+. ..++|||+|.+.++|..|+..+++..+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~ 67 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR 67 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE
Confidence 48999999999999999999999999999888765 346999999999999999999999999883
No 101
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.7e-11 Score=97.51 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=69.7
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEechhHHHHHHHhcCCCeecccceeeE
Q 023767 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSY 180 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~ 180 (277)
..++.+.|||..|.+.++.++|+-+|+.||.|..|.|+.+..+| ||||+|++.+++++|.-+|++..|+.+ .
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr----R 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR----R 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc----e
Confidence 45678999999999999999999999999999999999998876 999999999999999999999999994 5
Q ss_pred EEEe
Q 023767 181 VRVR 184 (277)
Q Consensus 181 i~~~ 184 (277)
|.|+
T Consensus 311 IHVD 314 (479)
T KOG0415|consen 311 IHVD 314 (479)
T ss_pred EEee
Confidence 5554
No 102
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.19 E-value=7.1e-11 Score=89.74 Aligned_cols=79 Identities=24% Similarity=0.349 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEe---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~~---~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
....++|..||.-+-+.+|..+|.+| |.|..+.| ..||.++|||||+|++++.|.-|.+.||+..|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 78888888 458999999999999999999999999999999999999997
Q ss_pred cCC
Q 023767 81 HGG 83 (277)
Q Consensus 81 ~~~ 83 (277)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 103
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=89.68 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=65.7
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
-++|||++|++.+..++|+++|++||+|+.+.|+.|+.+ ||+||+|.+.+.|..|++. -.-.|+|+...+.|...
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 579999999999999999999999999999999988765 5999999999999999974 44567887666666555
Q ss_pred ec
Q 023767 185 EY 186 (277)
Q Consensus 185 ~~ 186 (277)
-.
T Consensus 91 g~ 92 (247)
T KOG0149|consen 91 GG 92 (247)
T ss_pred cC
Confidence 33
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.12 E-value=4.8e-10 Score=72.75 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=56.5
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 114 VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 114 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
|.|||..+++++|.++|.+||.|..+.+..+.. .++|||+|.+.++|..|+..|++..+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~ 66 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR 66 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc
Confidence 578999999999999999999999999987754 46999999999999999999999999884
No 105
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=9.6e-10 Score=71.97 Aligned_cols=65 Identities=22% Similarity=0.395 Sum_probs=59.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 111 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
+|+|.|||..+++++|.++|..+|.|..+.+..... .++|||+|.+.++|..|+..+++..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~ 68 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR 68 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 478999999999999999999999999999987764 56999999999999999999999999884
No 106
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.11 E-value=1.6e-10 Score=86.01 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=67.8
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....+|||+||+..++++.|.++|-+.|+|..+++.++. ..|||||+|.++++|+.|++.||...+-|+ .|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr----pI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR----PI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc----ee
Confidence 3457899999999999999999999999999999998764 447999999999999999999999999995 55
Q ss_pred EEeecC
Q 023767 182 RVREYD 187 (277)
Q Consensus 182 ~~~~~~ 187 (277)
+|....
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 554443
No 107
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.6e-11 Score=91.28 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=69.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCc----EEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGM----TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..-|||+|||+++|+.||.-+|++||+|..|.++++..+| |||+.|++.....-|+..|||..|.| +.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g----RtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG----RTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc----eeEEee
Confidence 6689999999999999999999999999999999998764 99999999999999999999999999 678877
Q ss_pred ecC
Q 023767 185 EYD 187 (277)
Q Consensus 185 ~~~ 187 (277)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 543
No 108
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=6.9e-11 Score=102.05 Aligned_cols=166 Identities=20% Similarity=0.156 Sum_probs=102.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
-++.+|+|.|||..|+.++|..+|+.||+|+.|.+ +....+.+||+|.|..+|+.|++.|++..|.|+.|........
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36789999999999999999999999999999666 3345799999999999999999999999999999882111110
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHH
Q 023767 84 RRHSSSM-DRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKY 162 (277)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~ 162 (277)
....... .-...+..+....++-....--.++.|++..+...++.++.-+|.+..-....... .-|++|.+..++..
T Consensus 151 ~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~h--q~~~~~~~~~s~a~ 228 (549)
T KOG4660|consen 151 AMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGMLSPTRSSILLEHISSVDGSSPGRETPLLNH--QRFVEFADNRSYAF 228 (549)
T ss_pred cchhcccchhhhhccchhhcCCCCCCcCCcceeeeccchhhhhhhcchhccCccccccccchhh--hhhhhhccccchhh
Confidence 0000000 00001111111111110011111222888888777777777777665411111111 46778888888755
Q ss_pred HHHhcCCCeecc
Q 023767 163 AIRKLDRSEFRN 174 (277)
Q Consensus 163 a~~~l~g~~~~g 174 (277)
++..+ |..+.+
T Consensus 229 ~~~~~-G~~~s~ 239 (549)
T KOG4660|consen 229 SEPRG-GFLISN 239 (549)
T ss_pred cccCC-ceecCC
Confidence 55423 444444
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=2.6e-10 Score=89.86 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
-+.|+|||..||....+.||.++|-.||.|...++.. +.+++-|+||.|.++.+|..||..|||..|+=+.|+|.+.
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3578999999999999999999999999999988844 6788999999999999999999999999999999999886
Q ss_pred cCCC
Q 023767 81 HGGR 84 (277)
Q Consensus 81 ~~~~ 84 (277)
.++.
T Consensus 363 RPkd 366 (371)
T KOG0146|consen 363 RPKD 366 (371)
T ss_pred Cccc
Confidence 6543
No 110
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.05 E-value=8.9e-10 Score=87.86 Aligned_cols=80 Identities=25% Similarity=0.436 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
-+.+|+|.|||..|+++||++||+.||.++.+.|.. .+.+.|.|-|.|...++|..||+.||+..++|..|.+.....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 357899999999999999999999999999888865 568889999999999999999999999999999999988775
Q ss_pred CC
Q 023767 83 GR 84 (277)
Q Consensus 83 ~~ 84 (277)
+.
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 54
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=1.7e-09 Score=67.23 Aligned_cols=54 Identities=22% Similarity=0.405 Sum_probs=46.6
Q ss_pred HHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 126 LKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 126 l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|+..|||..+.| ..|.|.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g----~~l~V~ 54 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNG----RPLKVS 54 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETT----EEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECC----cEEEEE
Confidence 67899999999999998776 5699999999999999999999999999 455554
No 112
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=5.4e-10 Score=92.67 Aligned_cols=84 Identities=24% Similarity=0.515 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
.+.+|||++||.++++++|++.|++||.|..+.++. +...++|+||.|.+++.+++++. ..-..|.|+.+.|..|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 467999999999999999999999999999988866 35778999999999999999998 77889999999999999
Q ss_pred CCCCCCCC
Q 023767 82 GGRRHSSS 89 (277)
Q Consensus 82 ~~~~~~~~ 89 (277)
+.......
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 87655443
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=1.2e-09 Score=89.28 Aligned_cols=76 Identities=30% Similarity=0.566 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH-hcCCcccCCceEEEEEccC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR-GRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~-~l~~~~~~g~~l~v~~a~~ 82 (277)
+..++|||++|...+++.+|++.|.+||+|..|.+... ++.|||+|.+-+.|+.|.. .+|...|.|..|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45679999999999999999999999999999999643 6799999999999999774 4555788999999999887
No 114
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.8e-09 Score=93.60 Aligned_cols=82 Identities=26% Similarity=0.431 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~---~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
.+.|||.+|...+-..+|++||++||.|+..+|+.+ +..+-|+||+|.+.++|.+||..|+.+.|+|+.|.|+.+++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 467999999999999999999999999999999653 34466999999999999999999999999999999999997
Q ss_pred CCCCC
Q 023767 83 GRRHS 87 (277)
Q Consensus 83 ~~~~~ 87 (277)
.....
T Consensus 485 Ep~Gk 489 (940)
T KOG4661|consen 485 EPGGK 489 (940)
T ss_pred Ccccc
Confidence 65443
No 115
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.97 E-value=5.9e-11 Score=99.02 Aligned_cols=142 Identities=24% Similarity=0.374 Sum_probs=116.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC-cccCCceEEEEEccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~a~~~ 83 (277)
+.+||+||.+.++..+|..+|... +--..+.|. .||+||.+.++..|.+|++.|+| ..+.|..+.|.+.-+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 479999999999999999999754 222333333 68999999999999999999999 5789999999987754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-EecCCCcEEEEEEechhHHHH
Q 023767 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV-FRDRGGMTGIVDYTSYDDMKY 162 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~~~~fV~f~~~~~a~~ 162 (277)
... .+.+.|.|+|+...++.|..++.+||.+..|.. +.+..+...-|+|...+.+..
T Consensus 77 kqr----------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQR----------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHH----------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 421 456889999999999999999999999998854 444444455678899999999
Q ss_pred HHHhcCCCeeccc
Q 023767 163 AIRKLDRSEFRNA 175 (277)
Q Consensus 163 a~~~l~g~~~~g~ 175 (277)
||.+|+|..+.+.
T Consensus 135 ai~kl~g~Q~en~ 147 (584)
T KOG2193|consen 135 AIHKLNGPQLENQ 147 (584)
T ss_pred HHHhhcchHhhhh
Confidence 9999999998873
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.2e-09 Score=83.83 Aligned_cols=79 Identities=22% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
...+|||++|..++++..|...|-.||.|..|.++.+- ..+||||+|+..++|.+||..||+.++.| ..|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G----rtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG----RTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc----eeEEE
Confidence 36799999999999999999999999999999998764 34699999999999999999999999999 67777
Q ss_pred eecCCCC
Q 023767 184 REYDSRR 190 (277)
Q Consensus 184 ~~~~~~r 190 (277)
-.+.+-+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 7776644
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.93 E-value=3.2e-08 Score=84.63 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=112.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE-EEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD-IDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+..+|-+.+||+.||++||.++|+..-.|.. |.|+. .+.+.|-|||.|+++++|+.|+. -|...|..+-|.|-.+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 4568999999999999999999998766665 33433 34678999999999999999998 56667777777776544
Q ss_pred CCC------------CCCCCCCC-----C---------------------------------C---CCC---CC--CCCC
Q 023767 82 GGR------------RHSSSMDR-----Y---------------------------------S---SYS---SG--GSRG 103 (277)
Q Consensus 82 ~~~------------~~~~~~~~-----~---------------------------------~---~~~---~~--~~~~ 103 (277)
... ..+.+.+. . . .+. .. ....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 100 00000000 0 0 000 00 0000
Q ss_pred C---------------CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEEEEechhHHHHHHH
Q 023767 104 V---------------SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIVDYTSYDDMKYAIR 165 (277)
Q Consensus 104 ~---------------~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV~f~~~~~a~~a~~ 165 (277)
. .......++..+||+..++.+|..+|...-.+ .|+|...+ .++-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0 01123678889999999999999999976554 55555443 44689999999999999985
Q ss_pred hcCCCeecc
Q 023767 166 KLDRSEFRN 174 (277)
Q Consensus 166 ~l~g~~~~g 174 (277)
-++..+..
T Consensus 340 -kd~anm~h 347 (510)
T KOG4211|consen 340 -KDGANMGH 347 (510)
T ss_pred -cCCcccCc
Confidence 45555554
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=1.1e-10 Score=105.38 Aligned_cols=134 Identities=21% Similarity=0.269 Sum_probs=112.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+..++||.||++.+.+.+|...|..+|.+..+++. ..+..+|+|||+|..++++.+|+. ++-..+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh--------
Confidence 34578999999999999999999999988887773 467889999999999999999999 555555551
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCCcEEEEEEechh
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGGMTGIVDYTSYD 158 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~~fV~f~~~~ 158 (277)
..|+|.|+|+..|.++|+.++..+|.+..+.+... .+.|.|+|.|.+..
T Consensus 737 ----------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea 788 (881)
T KOG0128|consen 737 ----------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEA 788 (881)
T ss_pred ----------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcc
Confidence 26789999999999999999999999988766544 44579999999999
Q ss_pred HHHHHHHhcCCCeeccc
Q 023767 159 DMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 159 ~a~~a~~~l~g~~~~g~ 175 (277)
++..++...+...+.-.
T Consensus 789 ~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 789 DASRKVASVDVAGKREN 805 (881)
T ss_pred hhhhhcccchhhhhhhc
Confidence 99999988877666554
No 119
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=85.12 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=66.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..+|||+|||..+++++|.++|.+||.|..+.+..+. ..+||||+|.+.++|..|+..++|..+.| ..|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~----~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG----RPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC----ceeEee
Confidence 6899999999999999999999999999999988775 33699999999999999999999999999 455555
Q ss_pred ec
Q 023767 185 EY 186 (277)
Q Consensus 185 ~~ 186 (277)
..
T Consensus 191 ~~ 192 (306)
T COG0724 191 KA 192 (306)
T ss_pred cc
Confidence 53
No 120
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.88 E-value=3.9e-09 Score=87.30 Aligned_cols=171 Identities=19% Similarity=0.221 Sum_probs=128.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
...++|++++...+.+.++..+|..+|.+....+- .....+++++|.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46789999999999999999999999977776662 245678999999999999999999444456666666655544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEec
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVL-VTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTS 156 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~ 156 (277)
........ ........+..+++ |.+|+..++.++|..+|..+|.|..+.+...... +||+|.|.+
T Consensus 167 ~~~~~~~n----------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~ 236 (285)
T KOG4210|consen 167 RRGLRPKN----------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSA 236 (285)
T ss_pred cccccccc----------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhh
Confidence 33311110 00011122234455 9999999999999999999999999999877665 489999999
Q ss_pred hhHHHHHHHhcCCCeecccceeeEEEEeecCCCC
Q 023767 157 YDDMKYAIRKLDRSEFRNAFSRSYVRVREYDSRR 190 (277)
Q Consensus 157 ~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~~~r 190 (277)
...+..++.. +...+.+ ..+.+++.+++.
T Consensus 237 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 237 GNSKKLALND-QTRSIGG----RPLRLEEDEPRP 265 (285)
T ss_pred chhHHHHhhc-ccCcccC----cccccccCCCCc
Confidence 9999999987 7777777 566666666553
No 121
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.87 E-value=6e-09 Score=90.30 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=69.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..+||+|+|+++++++|.++|..+|.|..+.++.|..+ ||||++|.+.++|..|++.|||.++.| +.|+|..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g----r~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG----RKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC----ceEEeec
Confidence 79999999999999999999999999999999988765 499999999999999999999999999 6777776
Q ss_pred cCCC
Q 023767 186 YDSR 189 (277)
Q Consensus 186 ~~~~ 189 (277)
....
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 6544
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=98.83 E-value=2.7e-08 Score=64.78 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=45.2
Q ss_pred HHHHHHHHH----hcCCeeEEE-EEecC------CCcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023767 123 WQDLKDHMR----RAGDVCFSQ-VFRDR------GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 123 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
+++|.++|. +||.|..+. +..++ ..|+|||+|.+.++|.+|+..|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 467888888 999999985 54433 3469999999999999999999999999943
No 123
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=1.1e-08 Score=88.13 Aligned_cols=75 Identities=29% Similarity=0.568 Sum_probs=65.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
.+|||.|||+++++++|.++|..||+|+...|.. .+....||||+|.+.+.+..|+. .+-..|+++.|.|+.-..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 4599999999999999999999999999988732 23334899999999999999999 568899999999998664
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=4.5e-08 Score=67.02 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=63.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc--CCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccC----CceEEE
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY--GPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD----GYRLRV 77 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (277)
+||.|.|||...|.++|.+++... |...-+.|+. ++...|||||-|.+++.|...++.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999998753 6777777765 4567899999999999999999999998875 455666
Q ss_pred EEcc
Q 023767 78 ELAH 81 (277)
Q Consensus 78 ~~a~ 81 (277)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6665
No 125
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.79 E-value=3.6e-08 Score=64.23 Aligned_cols=71 Identities=27% Similarity=0.426 Sum_probs=50.1
Q ss_pred CeEEEcCCCCCCCHHHH----HHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 7 RTLYVGNLPGDTRMREV----EDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l----~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
..|+|.|||.+.+...| ++|+..|| .|..|. .+.|+|.|.+++.|..|.+.|+|-.+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999999987764 67777885 888762 5789999999999999999999999999999999976
Q ss_pred CCC
Q 023767 82 GGR 84 (277)
Q Consensus 82 ~~~ 84 (277)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 433
No 126
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=1.5e-08 Score=81.14 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
.+...|||+|+.+.+|.++|...|+.||.|..+.|+. .++++||+||+|.+.+.+..|+. ||+..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 5778999999999999999999999999998877754 45789999999999999999999 9999999999999998
Q ss_pred cCCCC
Q 023767 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
.-..+
T Consensus 178 r~~~p 182 (231)
T KOG4209|consen 178 RTNVP 182 (231)
T ss_pred eeecC
Confidence 76543
No 127
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.77 E-value=2.3e-08 Score=88.84 Aligned_cols=78 Identities=24% Similarity=0.462 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC------CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP------PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~------~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (277)
.++.|||+||++.++++.|...|..||+|..|+++.. .....++||.|.+-.+|++|++.|+|..+.+..+.+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 3678999999999999999999999999999999763 2556899999999999999999999999999999999
Q ss_pred EccC
Q 023767 79 LAHG 82 (277)
Q Consensus 79 ~a~~ 82 (277)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9853
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.72 E-value=1.6e-09 Score=89.79 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=54.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
+||+|++|+..+...++.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998877743 2335689999999999999999 7777666
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.68 E-value=3.9e-07 Score=75.73 Aligned_cols=159 Identities=19% Similarity=0.235 Sum_probs=107.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhccCCeeE---EEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYKYGPIVD---IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~---v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
.+++..|...+|||..++.+|-.+|.-.-...- +-+...+.-.|.|.|.|.++|.-+.|++ -+...+.++.|.|.-
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeec
Confidence 357778889999999999999999975421111 1122244556889999999999999998 566777888898877
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHh-----cC--CeeEEEEEecCCCcEEEE
Q 023767 80 AHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRR-----AG--DVCFSQVFRDRGGMTGIV 152 (277)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~-----~g--~v~~~~~~~~~~~~~~fV 152 (277)
+....-..-. ...........+....-.|.+.+||+++++.++.++|.. -| .|.+|.-..+..+|-|||
T Consensus 136 a~ge~f~~ia----gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 136 ATGEEFLKIA----GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred cCchhheEec----CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 6643221100 000000111112222445667899999999999999962 22 234444445566789999
Q ss_pred EEechhHHHHHHHh
Q 023767 153 DYTSYDDMKYAIRK 166 (277)
Q Consensus 153 ~f~~~~~a~~a~~~ 166 (277)
.|..+++|+.|+.+
T Consensus 212 lfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 212 LFACEEDAQFALRK 225 (508)
T ss_pred EecCHHHHHHHHHH
Confidence 99999999999963
No 130
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.63 E-value=3.4e-08 Score=76.15 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
....||||.||.++|||++|+++|+.|--...++|... .....|||+|.+.+.|..||..|+|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45678999999999999999999999965666666432 2356899999999999999999998765
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.57 E-value=3.7e-07 Score=81.28 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=118.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+.+.|-+.++++++...+++++|... .|..+.|.+ .+...|.++|+|..+.++.+|++ -|...+..+.++|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45677788999999999999998643 344444432 23347899999999999999998 66677778888887655
Q ss_pred CCCCC--CC------CCCCCCCCCC-----------CCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEE
Q 023767 82 GGRRH--SS------SMDRYSSYSS-----------GGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQV 141 (277)
Q Consensus 82 ~~~~~--~~------~~~~~~~~~~-----------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~ 141 (277)
..... .+ ........+. +.....+.....+|||..||..+++.++..+|.....|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 32211 00 0000000000 0111123445789999999999999999999998887776 555
Q ss_pred EecCC---CcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 142 FRDRG---GMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 142 ~~~~~---~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
...+. ...|||+|..++++..|+..-+...++. ..|+|+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~----r~irv~ 509 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH----RIIRVD 509 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCc----eEEEee
Confidence 54433 3589999999999998886555544443 455554
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.55 E-value=3.5e-07 Score=73.15 Aligned_cols=71 Identities=25% Similarity=0.309 Sum_probs=64.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
...+|+|.|||+.+..+||+++|.+||.+..+.+..+..+ +.|-|.|...++|..|++.+||..++|....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 3578999999999999999999999999999988888766 6999999999999999999999999996543
No 133
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.55 E-value=1e-07 Score=74.56 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEeecC
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVREYD 187 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~~~ 187 (277)
..+||++||+.+.+.+|+.+|..||.+..+.+... |+||+|++..+|..|+..||+..|.|- .+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e----~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE----RLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce----eeeeeccc
Confidence 36899999999999999999999999999988777 899999999999999999999999994 35555544
No 134
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=5.2e-08 Score=74.91 Aligned_cols=77 Identities=16% Similarity=0.125 Sum_probs=67.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
.+...+|+|.|+...++++.|.|+|-+.|.|..|.|..+... .||||+|+++..+.-|++.+||..+.+.++.+.++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 344789999999999999999999999999999999866543 49999999999999999999999998876665444
No 135
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.50 E-value=3.5e-07 Score=79.71 Aligned_cols=76 Identities=22% Similarity=0.330 Sum_probs=66.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-c---EEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-M---TGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~---~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
...+|||.+|...+...+|+.+|.+||+|+-+.|+++... + |+||+|.+.++|.++|..||..++.| .-|.|
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG----rmISV 479 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG----RMISV 479 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc----eeeee
Confidence 3568999999999999999999999999999999887543 2 99999999999999999999999999 45666
Q ss_pred eecC
Q 023767 184 REYD 187 (277)
Q Consensus 184 ~~~~ 187 (277)
+..+
T Consensus 480 EkaK 483 (940)
T KOG4661|consen 480 EKAK 483 (940)
T ss_pred eecc
Confidence 5443
No 136
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.47 E-value=4.2e-07 Score=81.88 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=63.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
..++|||++|+..++++||..+|+.||+|..|.++... ++|||.|....+|.+|+.+|+...+.++.++..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 46899999999999999999999999999998876554 5999999999999999999999999886554433
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.46 E-value=3.6e-07 Score=71.97 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=108.8
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 9 LYVGNLPGDTRMRE-V--EDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 9 l~V~nl~~~~t~~~-l--~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
++++|+-..+..+- | ...|+.+-.+....+.. .+.-.+++|+.|.....-.++...-++..+.-.+|.+--....
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45556555555444 3 56666665544444433 3455789999999888888888777777766665443322221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhH
Q 023767 84 RRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDD 159 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~ 159 (277)
.... ...-......||-+.|..+++.+.|...|.+|-......+.++..+ +|+||.|.+..+
T Consensus 179 edPs--------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 179 EDPS--------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred CCcc--------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 1111 0111234679999999999999999999999998888888877544 599999999999
Q ss_pred HHHHHHhcCCCeecccc
Q 023767 160 MKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 160 a~~a~~~l~g~~~~g~~ 176 (277)
+..|+..|+|..++.+.
T Consensus 245 ~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 245 YVRAMREMNGKYVGSRP 261 (290)
T ss_pred HHHHHHhhcccccccch
Confidence 99999999999998843
No 138
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.43 E-value=1.2e-06 Score=68.09 Aligned_cols=68 Identities=15% Similarity=0.175 Sum_probs=60.3
Q ss_pred CceEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEEe-cCCCcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023767 109 DYRVLVTGLPSSASWQDLKD----HMRRAGDVCFSQVFR-DRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~-~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
..+|||.||+..+..++|+. +|++||.|..|.... .+-.|.|||.|.+.+.|-.|+..|+|.-+-|+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 44999999999999999888 999999999987764 444578999999999999999999999999953
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1.3e-06 Score=71.79 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=63.8
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc-CCCeecccceeeEEE
Q 023767 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL-DRSEFRNAFSRSYVR 182 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l-~g~~~~g~~~~~~i~ 182 (277)
+......+|||++|...+++++|.++|.+||+|..+.+..... +|||+|.+.+.|+.|..++ +...|+| ..|.
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G----~Rl~ 296 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVING----FRLK 296 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecc----eEEE
Confidence 3445578999999999999999999999999999998876653 9999999999999877664 6566677 5566
Q ss_pred EeecCC
Q 023767 183 VREYDS 188 (277)
Q Consensus 183 ~~~~~~ 188 (277)
+....+
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 664443
No 140
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.40 E-value=1.3e-06 Score=66.84 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRA-GDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.....++|..+|..+-+.+|..+|.++ |.|..+.+.++..+ +||||+|++++.|+-|.+.||+..+.++.+.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445689999999999999999999998 57777777666544 5999999999999999999999999997665543
No 141
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.37 E-value=3.9e-07 Score=72.02 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=52.1
Q ss_pred HHHHHHhh-ccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 21 REVEDLFY-KYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 21 ~~l~~~F~-~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
++|...|+ +||+|+.+++-. .....|.+||.|..+++|.+|+..||+..|.|++|.+++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 44555555 899999998833 345689999999999999999999999999999999998764
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.32 E-value=5.9e-06 Score=71.56 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=61.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
...|||.|||.+++..+|+++|..||.|....|.... ...||||+|++.+.++.||..- -..+++ ..+.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~----~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG----RKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC----eeEEEE
Confidence 3459999999999999999999999999997666432 2259999999999999999754 556666 677788
Q ss_pred ecCCC
Q 023767 185 EYDSR 189 (277)
Q Consensus 185 ~~~~~ 189 (277)
++...
T Consensus 363 ek~~~ 367 (419)
T KOG0116|consen 363 EKRPG 367 (419)
T ss_pred ecccc
Confidence 77654
No 143
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.29 E-value=2e-06 Score=60.38 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=43.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCc-----ccCCceEEEEE
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY-----NFDGYRLRVEL 79 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~-----~~~g~~l~v~~ 79 (277)
..|+|.+++..++.++|+++|++||+|..|.+.. ....|||-|.+++.|..|+..+... .|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~---G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR---GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--T---T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecC---CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 4689999999999999999999999999999864 2458999999999999998766433 44555554444
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.24 E-value=6.7e-06 Score=67.68 Aligned_cols=78 Identities=24% Similarity=0.445 Sum_probs=66.0
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
+..++.|||.|||.++|.+++.++|.++|.|.. |.+..+..+ |-|.+.|...+++.-|+..|++..+.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344677999999999999999999999997754 677776654 479999999999999999999999998
Q ss_pred cceeeEEEEeecC
Q 023767 175 AFSRSYVRVREYD 187 (277)
Q Consensus 175 ~~~~~~i~~~~~~ 187 (277)
..|+|..+.
T Consensus 211 ----~~~rVerAk 219 (382)
T KOG1548|consen 211 ----KKLRVERAK 219 (382)
T ss_pred ----cEEEEehhh
Confidence 677776554
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.8e-06 Score=75.33 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
....+|+|.|||..++.++|.++|..||+|..|..-.. ..+.+||+|-+..+|+.|++.|++.++.|+.+.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 44679999999999999999999999999998554333 335899999999999999999999999996544
No 146
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.20 E-value=9.3e-07 Score=69.74 Aligned_cols=70 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC-----------CCC----cEEEEEEcChHHHHHHHHhcCCcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP-----------RPP----GYAFLEFEDYRDAEDAIRGRDGYN 69 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~-----------~~~----g~~fV~f~~~~~a~~A~~~l~~~~ 69 (277)
.+-+|||+||||.+...-|+++|++||+|-.|.|.... ... .-|+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 35689999999999999999999999999999994321 111 127899999999999999999999
Q ss_pred cCCce
Q 023767 70 FDGYR 74 (277)
Q Consensus 70 ~~g~~ 74 (277)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.18 E-value=2e-06 Score=67.78 Aligned_cols=75 Identities=19% Similarity=0.355 Sum_probs=64.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~---~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
.-.||.|.|...++++.|-..|.+|-.....++ ..+++++||+||-|.+++++..|+..|||..++.+.|.+.-+
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 457999999999999999999999865555555 447899999999999999999999999999999998876543
No 148
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.15 E-value=2.3e-06 Score=70.82 Aligned_cols=80 Identities=29% Similarity=0.403 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeE--------EEe---ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVD--------IDL---KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~~---~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~ 73 (277)
...+|||.+||..+++++|..+|.+||.|.. |+| ++|+.+++-|.|.|.+...|+.|+..+++..|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4578999999999999999999999998764 222 34778899999999999999999999999999999
Q ss_pred eEEEEEccCCC
Q 023767 74 RLRVELAHGGR 84 (277)
Q Consensus 74 ~l~v~~a~~~~ 84 (277)
+|.|-+|....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998887544
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.12 E-value=1.2e-05 Score=72.07 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=63.4
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC-------cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 105 SRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG-------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
..+..++|||+||++.++++.|...|..||+|..+.|++.... .++||.|-+..+|+.|++.|+|..+.+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3456789999999999999999999999999999999976432 499999999999999999999999987
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=8.7e-06 Score=66.78 Aligned_cols=76 Identities=24% Similarity=0.387 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHhhccCCeeEEEeec-CC---CCCcE--EEEEEcChHHHHHHHHhcCCcccCCc
Q 023767 6 SRTLYVGNLPGDTRMREV------EDLFYKYGPIVDIDLKI-PP---RPPGY--AFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l------~~~F~~~G~v~~v~~~~-~~---~~~g~--~fV~f~~~~~a~~A~~~l~~~~~~g~ 73 (277)
.+-+||-+||+.+..+++ .++|.+||.|..|.+.. +. ...+. .||+|...|+|..||+..+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 355899999999988873 47999999999998843 21 11222 49999999999999999999999999
Q ss_pred eEEEEEcc
Q 023767 74 RLRVELAH 81 (277)
Q Consensus 74 ~l~v~~a~ 81 (277)
.|.+.+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998855
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.08 E-value=1.2e-05 Score=48.85 Aligned_cols=53 Identities=32% Similarity=0.548 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHH
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~ 62 (277)
++.|-|.+.+++..+ +|...|.+||+|..+.+. ....+.||+|.+..+|+.|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 367899999988664 455588899999999886 23679999999999999985
No 152
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.06 E-value=3.5e-06 Score=73.94 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc---CCceEEEEE
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF---DGYRLRVEL 79 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (277)
..++.|+|.||-..+|.-+|++|+. .+|.|.+++|-. -+..|||.|.+.++|.+..+.|||..+ +++-|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 678999986621 267899999999999999999999877 467788888
Q ss_pred ccC
Q 023767 80 AHG 82 (277)
Q Consensus 80 a~~ 82 (277)
...
T Consensus 519 ~~~ 521 (718)
T KOG2416|consen 519 VRA 521 (718)
T ss_pred cch
Confidence 763
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.06 E-value=9.5e-06 Score=56.94 Aligned_cols=59 Identities=22% Similarity=0.405 Sum_probs=39.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCC
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRS 170 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~ 170 (277)
..|+|.+++..++.++|++.|.+||.|.+|++..+.. .|+|.|.+.+.|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 4688999999999999999999999999998877654 6999999999999999877544
No 154
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.03 E-value=4.9e-06 Score=68.50 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=63.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccC--CeeEEEee---cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYG--PIVDIDLK---IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~~~---~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
-.+|||||-|.+|++||.+.+...| .+.++++. .+++++|||+|...+...+++.|+.|....|+|+.-.|...+
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 4589999999999999999988777 45555553 368999999999999999999999999999999987666544
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.99 E-value=6.9e-05 Score=49.11 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=45.9
Q ss_pred ceEEEeCCCCCCCHH----HHHHHHHhcC-CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEe
Q 023767 110 YRVLVTGLPSSASWQ----DLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVR 184 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~----~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~ 184 (277)
..|+|.|||.+.+.. -|++++..+| .|..|. ++.|.|.|.+.+.|..|.+.|+|..+-| ..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG----~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFG----NKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSS----S--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhccccccc----ceEEEE
Confidence 579999999998855 4666777776 676552 2479999999999999999999999999 567766
Q ss_pred ecC
Q 023767 185 EYD 187 (277)
Q Consensus 185 ~~~ 187 (277)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 553
No 156
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.98 E-value=8.8e-05 Score=50.91 Aligned_cols=66 Identities=15% Similarity=0.141 Sum_probs=55.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEEecC----CCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRA--GDVCFSQVFRDR----GGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~----~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
++|.|.|+|...+.++|.+++... |....+.++.|- +.|||||.|.+++.|..-.+.++|.....-
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 589999999999999999988864 566667776554 347999999999999999999999988653
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.96 E-value=5.1e-05 Score=52.42 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEee----------cCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK----------IPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR 74 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~----------~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (277)
..+.|.|-+.|+. ....|.+.|++||+|.+..-. ......+...|.|.++.+|.+|+. -||..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 5677999999988 778889999999999887510 112346789999999999999999 9999998865
Q ss_pred -EEEEEcc
Q 023767 75 -LRVELAH 81 (277)
Q Consensus 75 -l~v~~a~ 81 (277)
+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 5577764
No 158
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.95 E-value=6.8e-06 Score=68.19 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=71.6
Q ss_pred CCCCCeEE-EcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023767 3 SRSSRTLY-VGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 3 ~~~s~~l~-V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (277)
..++.++| |+||+..+++++|+..|..+|.|..+.++. ++..++||||+|.....+..|+.. +...+.+.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34566777 999999999999999999999999999955 568899999999999999999986 8899999999999
Q ss_pred EccCCC
Q 023767 79 LAHGGR 84 (277)
Q Consensus 79 ~a~~~~ 84 (277)
...+..
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 877643
No 159
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.87 E-value=4.5e-05 Score=68.42 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=63.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCee-EEEe--ecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIV-DIDL--KIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v~~--~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
++|-+.|+|++++.+||.++|.-|-.+- +|.+ ..++...|-|.|.|++.++|..|...|++..|..+.|.+.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3889999999999999999999996443 3444 34678899999999999999999999999999999988764
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=6.3e-05 Score=65.94 Aligned_cols=76 Identities=26% Similarity=0.437 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCC--H----HHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccC-CceEE
Q 023767 6 SRTLYVGNLPGDTR--M----REVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD-GYRLR 76 (277)
Q Consensus 6 s~~l~V~nl~~~~t--~----~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~-g~~l~ 76 (277)
...|+|.|+|---. . .-|..+|+++|+|..+.++. .+..+||.|++|.+..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45789999875322 2 23567999999999999975 4568999999999999999999999998775 55666
Q ss_pred EEEcc
Q 023767 77 VELAH 81 (277)
Q Consensus 77 v~~a~ 81 (277)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 66544
No 161
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.78 E-value=4.4e-05 Score=61.35 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=62.2
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.....+||+|+...++.++++.+|..||.|..+.+..+... +|+||+|.+.+.++.|+. |||..+.|..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 34678999999999999999999999999998888766544 599999999999999998 999999995443
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.73 E-value=9.6e-05 Score=58.65 Aligned_cols=100 Identities=28% Similarity=0.244 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCe
Q 023767 57 DAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDV 136 (277)
Q Consensus 57 ~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 136 (277)
-|..|...|++....|+.|.|.|+.. ..|+|.||...++.+.|.+.|..||+|
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 35667777999999999999999874 479999999999999999999999999
Q ss_pred eEEEEEecC---CCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEE
Q 023767 137 CFSQVFRDR---GGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRV 183 (277)
Q Consensus 137 ~~~~~~~~~---~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~ 183 (277)
....++.+. .++-++|+|.....|.+|+..+...-+.+........|
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~V 108 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGV 108 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCC
Confidence 886665543 33588999999999999999886666655444444333
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.67 E-value=4.2e-05 Score=64.83 Aligned_cols=64 Identities=27% Similarity=0.324 Sum_probs=55.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecC--------CC--------CCcEEEEEEcChHHHHHHHHhcCCc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIP--------PR--------PPGYAFLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~--------~~--------~~g~~fV~f~~~~~a~~A~~~l~~~ 68 (277)
++++|.+.|||.+-.-+.|.+||..+|.|..|.+... +. .+-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999443 11 2456999999999999999977553
No 164
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.65 E-value=0.00033 Score=45.94 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=43.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~ 67 (277)
+..+|+ +|..+...||.+||+.||.|.--.|. -.-|||...+.++|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-----dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-----DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-----TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-----CCcEEEEeecHHHHHHHHHHhcc
Confidence 455666 99999999999999999998776665 35899999999999999987753
No 165
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.60 E-value=0.00034 Score=51.30 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=46.4
Q ss_pred HHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 22 EVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 22 ~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
+|.+.|..||+|.-+++. .+--+|+|.+-++|.+|+. |+|..+.|+.|.|.+-.+.
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 678889999999988887 3467999999999999999 9999999999999986653
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.00027 Score=42.90 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHH
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAI 164 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~ 164 (277)
+.|.|.+.++...+. +..+|..||+|..+.+... ....+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 467888888766644 5569999999999888722 238999999999999985
No 167
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00055 Score=59.71 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=55.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhh-ccCCeeEEEeecC---CCCCcEEEEEEcChHHHHHHHH
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFY-KYGPIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~---~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
-++.+|||||+||--++.++|..+|+ -||-|..+-|-.+ +-++|.|=|.|.+..+-.+||.
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 36889999999999999999999999 7999999999554 4678999999999999999997
No 168
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.46 E-value=0.0012 Score=46.59 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEeecCCCCCc-EEEEEEcChHHHHHHHHhcCCcccC
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPG-YAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~~g-~~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
..+..+.+...|..++.++|..+.+.+ ..|..+.+..++.+.. .++|+|.++++|+..+..+||..|.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 345556666666667777787777776 4677888877765444 5789999999999999999998875
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.42 E-value=9.7e-05 Score=58.60 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=59.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---------c-------EEEEEEechhHHHHHHHhcCCCee
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG---------M-------TGIVDYTSYDDMKYAIRKLDRSEF 172 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------~-------~~fV~f~~~~~a~~a~~~l~g~~~ 172 (277)
...||++++|+.+...-|+++|..||+|-.|.+...... + -|+|+|.....|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 568999999999999999999999999999988744221 1 489999999999999999999999
Q ss_pred ccc
Q 023767 173 RNA 175 (277)
Q Consensus 173 ~g~ 175 (277)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 995
No 170
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.37 E-value=0.00031 Score=64.64 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
...|+|.|+|+..|.++|+.+|..+|.+.++.++. .++++|.|||.|.++.+|..++...+...+....+.|..+++.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 34689999999999999999999999999998744 6789999999999999999999989988888888888886654
Q ss_pred C
Q 023767 84 R 84 (277)
Q Consensus 84 ~ 84 (277)
.
T Consensus 816 ~ 816 (881)
T KOG0128|consen 816 R 816 (881)
T ss_pred c
Confidence 3
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.34 E-value=0.00063 Score=55.10 Aligned_cols=62 Identities=23% Similarity=0.281 Sum_probs=51.3
Q ss_pred HHHHHHHhhccCCeeEEEeecCC----CCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 20 MREVEDLFYKYGPIVDIDLKIPP----RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 20 ~~~l~~~F~~~G~v~~v~~~~~~----~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
++++.+..++||.|..|.+.... .-.--.||+|...++|.+|+-.|||..|+|+.+...|-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56678899999999999885422 123457999999999999999999999999998887755
No 172
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.32 E-value=0.00043 Score=57.70 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=59.2
Q ss_pred CCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeec
Q 023767 106 RRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCF--------SQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
.....+|||.+||..+++++|.++|.++|.|.. |+|.++..+ +-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345679999999999999999999999998743 445544433 58999999999999999999999999
Q ss_pred cc
Q 023767 174 NA 175 (277)
Q Consensus 174 g~ 175 (277)
+.
T Consensus 143 gn 144 (351)
T KOG1995|consen 143 GN 144 (351)
T ss_pred CC
Confidence 94
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.27 E-value=0.00044 Score=64.05 Aligned_cols=81 Identities=27% Similarity=0.404 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEEEcc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAH 81 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~a~ 81 (277)
..++.++|++|.+.+....|...|..||.|..|.+-. ...||||.|++...|..|++.|-|..|.| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4788999999999999999999999999999988853 36799999999999999999999999975 459999988
Q ss_pred CCCCCC
Q 023767 82 GGRRHS 87 (277)
Q Consensus 82 ~~~~~~ 87 (277)
.....+
T Consensus 530 ~~~~~P 535 (975)
T KOG0112|consen 530 PPGATP 535 (975)
T ss_pred CCCCCh
Confidence 655443
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.0013 Score=58.08 Aligned_cols=66 Identities=26% Similarity=0.315 Sum_probs=55.0
Q ss_pred CceEEEeCCCCCCC------HHHHHHHHHhcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 109 DYRVLVTGLPSSAS------WQDLKDHMRRAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 109 ~~~l~v~~l~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~---~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
...|+|.|+|---. ...|..+|.++|++..+.++.+..+ ||.|++|.++.+|+.|++.|||+.++-
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 56888899886433 3457789999999999988866554 599999999999999999999999975
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.13 E-value=0.0018 Score=46.96 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=55.6
Q ss_pred CCCeEEEcCCCCCC----CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 5 SSRTLYVGNLPGDT----RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 5 ~s~~l~V~nl~~~~----t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+-.||.|.=|..++ +...|...++.||+|..|.+. ++..|.|.|.+..+|.+|+.+++. ...|..+++.|-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34567776554444 444566777899999999885 367899999999999999998876 667888888875
Q ss_pred c
Q 023767 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.0015 Score=53.96 Aligned_cols=74 Identities=15% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCCceEEEeCCCCCCCHHH------HHHHHHhcCCeeEEEEEecCCC-----c--EEEEEEechhHHHHHHHhcCCCee
Q 023767 106 RRSDYRVLVTGLPSSASWQD------LKDHMRRAGDVCFSQVFRDRGG-----M--TGIVDYTSYDDMKYAIRKLDRSEF 172 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~~~~~~------l~~~f~~~g~v~~~~~~~~~~~-----~--~~fV~f~~~~~a~~a~~~l~g~~~ 172 (277)
....+-+||-+|++.+..++ -.++|.+||.|..|.|.+.... + -.+|.|.+.++|..+|...+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 34567899999998876555 3579999999999888755321 1 248999999999999999999999
Q ss_pred cccceee
Q 023767 173 RNAFSRS 179 (277)
Q Consensus 173 ~g~~~~~ 179 (277)
+|+.+..
T Consensus 191 DGr~lka 197 (480)
T COG5175 191 DGRVLKA 197 (480)
T ss_pred cCceEee
Confidence 9965443
No 177
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.11 E-value=0.0021 Score=44.49 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=47.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-E----------EecCCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ-V----------FRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
...|.|-+.|+. ....|.++|++||.|.... + ..........|.|.+..+|.+||. .||..+.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 457889999888 5566889999999987764 1 112233489999999999999996 899999885
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.96 E-value=0.0012 Score=56.26 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=54.5
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEec---CCC--------------cEEEEEEechhHHHHHHHhcCC
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRD---RGG--------------MTGIVDYTSYDDMKYAIRKLDR 169 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------~~~fV~f~~~~~a~~a~~~l~g 169 (277)
.+..+|.+.|||.+-..+-|.++|..+|.|..|.|... +.. -+|+|+|++.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45789999999999999999999999999999999876 211 1799999999999999987754
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.94 E-value=0.0033 Score=51.05 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCeeEEEEEecCCC-----cEEEEEEechhHHHHHHHhcCCCeecccce
Q 023767 123 WQDLKDHMRRAGDVCFSQVFRDRGG-----MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 123 ~~~l~~~f~~~g~v~~~~~~~~~~~-----~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
++++.+.+.+||.|..|.|...++. .-.||+|...++|.+|+-.|||..|+|+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 5578899999999999988877543 268999999999999999999999999544
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.94 E-value=0.0058 Score=52.64 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhcc-CCeeEEEeecCCCCCcE-EEEEEcChHHHHHHHHhcCCcccC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKY-GPIVDIDLKIPPRPPGY-AFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~~~~~~~~~g~-~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
+++.|+|-.+|..+|..||..|...| -.|.++.+..++.+..| ++|+|.+.++|...+..+||..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 37889999999999999999999876 48899999877766555 789999999999999999998885
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.90 E-value=0.00054 Score=54.56 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=45.8
Q ss_pred HHHHHHHH-hcCCeeEEEEEecCCC---cEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 124 QDLKDHMR-RAGDVCFSQVFRDRGG---MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 124 ~~l~~~f~-~~g~v~~~~~~~~~~~---~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
++|...|. +||+|..+.|..+-.. |-++|.|...++|++|+..||+.++.|+.+...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 45555555 8999999877665432 4689999999999999999999999997665543
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.85 E-value=0.0014 Score=50.66 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=51.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCe---eEEEeec-----CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023767 3 SRSSRTLYVGNLPGDTRMREVEDLFYK-YGPI---VDIDLKI-----PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~l~~~F~~-~G~v---~~v~~~~-----~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~ 73 (277)
.+...+|.|.+|||.+|++++.+.+.. ++.. ..+.-.. ......-|||.|.+.+++...+..++|..|.+.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 356679999999999999999998887 6655 3333211 112235699999999999999999999777432
Q ss_pred -----eEEEEEccCCC
Q 023767 74 -----RLRVELAHGGR 84 (277)
Q Consensus 74 -----~l~v~~a~~~~ 84 (277)
...|++|....
T Consensus 84 kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQK 99 (176)
T ss_dssp TS-EEEEEEEE-SS--
T ss_pred CCCCcceeEEEcchhc
Confidence 45677776533
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.69 E-value=0.0083 Score=44.16 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEE
Q 023767 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYV 181 (277)
Q Consensus 124 ~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i 181 (277)
.+|.+.|..||++.-+.+..+ .-+|+|.+-+.|.+|+. ++|.+++|..+...+
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 478888999999998888776 58999999999999996 999999995444333
No 184
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.51 E-value=0.013 Score=38.50 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=41.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g 169 (277)
...++|. +|..+...||.++|..||.|..-.|... .|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 4566666 9999999999999999999864444322 699999999999999887754
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.38 E-value=0.032 Score=34.77 Aligned_cols=54 Identities=13% Similarity=0.175 Sum_probs=42.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
..|+|.++. +++.++|+.+|..| .....|.+..+ .-|-|.|.+.+.|..|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 578999985 68999999999988 13445666543 36889999999999999765
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.35 E-value=0.036 Score=34.51 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=44.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRA---GDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l 167 (277)
...|+|.|+. +++.++|+.+|..| .....|.+..+. .|-|.|.+.+.|..||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 4589999985 57888999999998 235567777665 4889999999999999764
No 187
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.27 E-value=0.13 Score=42.23 Aligned_cols=162 Identities=11% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCC----------CCCcEEEEEEcChHHHHHHH----HhcCC--cc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPP----------RPPGYAFLEFEDYRDAEDAI----RGRDG--YN 69 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~----------~~~g~~fV~f~~~~~a~~A~----~~l~~--~~ 69 (277)
++.|.+.||..+++...+...|-+||+|+.|.|.... .....+.+-|-+.+.|...+ +.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999995432 33457899999999998765 22332 34
Q ss_pred cCCceEEEEEccCCCCCCCC-CCCCCCC----CCCCC-CCCCCCCCceEEEeCCCCCC-CHHHHHHH---HHhcC----C
Q 023767 70 FDGYRLRVELAHGGRRHSSS-MDRYSSY----SSGGS-RGVSRRSDYRVLVTGLPSSA-SWQDLKDH---MRRAG----D 135 (277)
Q Consensus 70 ~~g~~l~v~~a~~~~~~~~~-~~~~~~~----~~~~~-~~~~~~~~~~l~v~~l~~~~-~~~~l~~~---f~~~g----~ 135 (277)
+.-..|.|.+..-....... .+....+ ...-. .-........|.|.=- ..+ .++.+.+. +..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 45667777776532211110 1111111 00000 1122334556666532 344 33333332 22333 2
Q ss_pred eeEEEEEecC------CCcEEEEEEechhHHHHHHHhcC
Q 023767 136 VCFSQVFRDR------GGMTGIVDYTSYDDMKYAIRKLD 168 (277)
Q Consensus 136 v~~~~~~~~~------~~~~~fV~f~~~~~a~~a~~~l~ 168 (277)
++.|+++... +..||.+.|-+...|.+.++.+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 4556665332 22499999999999999998876
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.26 E-value=0.002 Score=53.54 Aligned_cols=76 Identities=29% Similarity=0.423 Sum_probs=59.5
Q ss_pred CeEEEcCCCCCCCHHHHH---HHhhccCCeeEEEeecCC------CCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023767 7 RTLYVGNLPGDTRMREVE---DLFYKYGPIVDIDLKIPP------RPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v~~~~~~------~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (277)
+-+||-+|++.+..+.+. +.|.+||.|..|.+..+. ...--+||+|...++|..||...+|+.++|+.|.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888899888766664 588999999999885422 11123899999999999999999999999999776
Q ss_pred EEccC
Q 023767 78 ELAHG 82 (277)
Q Consensus 78 ~~a~~ 82 (277)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 66553
No 189
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.019 Score=46.95 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCce-EEEEEccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYR-LRVELAHGG 83 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~a~~~ 83 (277)
.=|.|-++|+. ....|..+|++||+|...... ..-.+-+|.|.+.-+|.+|+. .||+.|+|-. |-|..+..+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45777788766 556788899999999987665 235689999999999999998 8999988765 556665544
No 190
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.21 E-value=0.0032 Score=54.49 Aligned_cols=75 Identities=15% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCCeEEEcCCCCCC-CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 5 SSRTLYVGNLPGDT-RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 5 ~s~~l~V~nl~~~~-t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
+.+.|-+--+|+.+ |.++|...|.+||+|..|.+-.. .-.|.|+|.+..+|-.|+. .++..|+++.|.|-|.++.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 44555555566655 67889999999999999999543 4578999999999999988 8999999999999998864
No 191
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.0078 Score=53.20 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc--cCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC--cccCCceEEEEE
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG--YNFDGYRLRVEL 79 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~ 79 (277)
.-+.|+|.-||..+..++|+.||.. |-++++|.+..+ .-=||+|++..||..|++.|.. ..|-|++|...+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3467899999999999999999974 778999988542 2349999999999999987765 566777665443
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.99 E-value=0.027 Score=49.92 Aligned_cols=56 Identities=14% Similarity=0.206 Sum_probs=47.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHh--cCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRR--AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l 167 (277)
-+.|++..||..+..++|+.+|+- +-+++.|.+..+.+ =||+|++..||+.|.+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHH
Confidence 456788999999999999999995 56788888877653 689999999999998765
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.95 E-value=0.038 Score=42.89 Aligned_cols=63 Identities=29% Similarity=0.355 Sum_probs=46.7
Q ss_pred CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC--CcccCCceEEEEEccCCC
Q 023767 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNFDGYRLRVELAHGGR 84 (277)
Q Consensus 19 t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~a~~~~ 84 (277)
..+.|.++|..|+.+..+.+.. +-+-..|.|.+.++|..|...|+ +..|.|..|.|.++....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999999999888877763 24568999999999999999999 999999999999986443
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.79 E-value=0.0065 Score=54.09 Aligned_cols=67 Identities=15% Similarity=0.192 Sum_probs=54.8
Q ss_pred CCCCCceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 105 SRRSDYRVLVTGLPSSASWQDLKDHMRR-AGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 105 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
.....+.|||.||--..|.-+|++++.. .|.|...+|-..+. .|||.|.+.++|.+....|||....
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccC
Confidence 3456789999999999999999999995 55666664443333 6999999999999999999997763
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.64 E-value=0.013 Score=46.78 Aligned_cols=75 Identities=28% Similarity=0.366 Sum_probs=59.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec--CCCCCcEEEEEEcChHHHHHHHHhcCCccc----CCceEEEEEc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI--PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF----DGYRLRVELA 80 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~--~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~----~g~~l~v~~a 80 (277)
..|+|.||..-+.-+.|.+-|+.||+|....++. .+++.+-++|+|...-.|.+|+..+..-.| .+.+..|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 6799999999999999999999999998866644 357778899999999999999987754333 3455555544
Q ss_pred c
Q 023767 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 196
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.41 E-value=0.09 Score=34.26 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHhhccC-----CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 16 GDTRMREVEDLFYKYG-----PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 16 ~~~t~~~l~~~F~~~G-----~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
..++..+|..++...+ .|-.|.+. ..|+||+.. .+.|..++..|++..+.|+.|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3578899999888663 56667776 569999986 45888999999999999999999875
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.24 E-value=0.011 Score=53.38 Aligned_cols=71 Identities=20% Similarity=0.183 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+.-+|||+||...+..+-+..+...||-|..+.... |||.+|.....+..|+..++...++|+.+.+..-.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 457899999999999999999999999988876542 99999999999999999999999999998877643
No 198
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.23 E-value=0.025 Score=46.94 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.9
Q ss_pred CcEEEEEEcChHHHHHHHH
Q 023767 45 PGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 45 ~g~~fV~f~~~~~a~~A~~ 63 (277)
+.-.||-|..+.-|.+++.
T Consensus 173 RT~v~vry~pe~iACaciy 191 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACACIY 191 (367)
T ss_pred ccceeeecCHHHHHHHHHH
Confidence 4457888877766666665
No 199
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.12 E-value=0.042 Score=45.67 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHH
Q 023767 120 SASWQDLKDHMR 131 (277)
Q Consensus 120 ~~~~~~l~~~f~ 131 (277)
++++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 456666666554
No 200
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.04 E-value=0.11 Score=46.57 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=61.8
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEeecC-------------CC---------------------
Q 023767 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKIP-------------PR--------------------- 43 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~v~~~~~-------------~~--------------------- 43 (277)
+..++.|-|.||.|+ +...+|..+|..| |.|..|.|..+ |.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 457899999999996 7999999999877 58999988221 11
Q ss_pred ----------------CCcEEEEEEcChHHHHHHHHhcCCcccCC--ceEEEEEcc
Q 023767 44 ----------------PPGYAFLEFEDYRDAEDAIRGRDGYNFDG--YRLRVELAH 81 (277)
Q Consensus 44 ----------------~~g~~fV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~a~ 81 (277)
.--||.|+|.+.+.|.+.+..++|+.|.. ..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 01378999999999999999999999864 445555544
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.94 E-value=0.053 Score=47.25 Aligned_cols=65 Identities=17% Similarity=0.230 Sum_probs=49.1
Q ss_pred eEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 111 RVLVTGLPSSA-SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 111 ~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
.|.+.-.+..+ +..+|..+|.+||+|..|.+-... .-|.|+|.+..+|-.|.. .++..|+++.+.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnnr~iK 439 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIK 439 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecCceeE
Confidence 34444445553 578999999999999999886652 258999999999977764 889999985443
No 202
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.83 E-value=0.0011 Score=56.49 Aligned_cols=78 Identities=15% Similarity=0.296 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
++.|.|.|||+...++.|-.|+.+||.|+.|....+....-..-|+|...+.+..|++.|+|..+....+.|.|....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 567899999999999999999999999999988655433445568899999999999999999999999998886644
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.096 Score=40.46 Aligned_cols=69 Identities=12% Similarity=0.204 Sum_probs=46.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCCe---eEEEEEecCCC------cEEEEEEechhHHHHHHHhcCCCeecccce
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRR-AGDV---CFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~~------~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
..+|.|.+||+.+|++++.+.+.. ++.. .++.-...... .-|+|.|.+.+++..-...++|..+-+...
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 569999999999999999997776 6655 23321122111 169999999999999999999988765443
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.34 E-value=0.55 Score=33.15 Aligned_cols=65 Identities=9% Similarity=0.047 Sum_probs=47.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
..+.+...|..++.++|..+...+- .|..+.|.++... ..+.+.|.+.+.|.+-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444555566667766666655 4666788777544 378999999999999999999999976
No 205
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.33 E-value=0.088 Score=35.40 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=45.5
Q ss_pred EEEEEcChHHHHHHHHhcCC-cccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHH
Q 023767 48 AFLEFEDYRDAEDAIRGRDG-YNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDL 126 (277)
Q Consensus 48 ~fV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l 126 (277)
|+|+|.++.-|+..++.-.. ..+.+..+.|............. .--......+|.|.|||..+.+++|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~-----------qv~~~vs~rtVlvsgip~~l~ee~l 69 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKF-----------QVFSGVSKRTVLVSGIPDVLDEEEL 69 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEE-----------EEEEcccCCEEEEeCCCCCCChhhh
Confidence 68999999999998873322 44566666665544222111000 0001123678999999999999988
Q ss_pred HHHHH
Q 023767 127 KDHMR 131 (277)
Q Consensus 127 ~~~f~ 131 (277)
++.+.
T Consensus 70 ~D~Le 74 (88)
T PF07292_consen 70 RDKLE 74 (88)
T ss_pred eeeEE
Confidence 76543
No 206
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=94.19 E-value=0.064 Score=40.29 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=80.0
Q ss_pred EEEcCCC--CCCCHHHHHHHhhc-cCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCC
Q 023767 9 LYVGNLP--GDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRR 85 (277)
Q Consensus 9 l~V~nl~--~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 85 (277)
..|+.+. ...+...|.+.+.. ++....+.+..- ..++..+.|.+++++..++. .....+.|..|.+....+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4455552 34667777776664 454444444321 26899999999999999988 555667787787777664322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecC
Q 023767 86 HSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (277)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 145 (277)
.... .......-|.|-|||.. .+++.|..+...+|++..++.....
T Consensus 95 ~~~~--------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV--------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc--------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 1110 00111345777899988 6788899999999999888876554
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.84 E-value=0.31 Score=30.86 Aligned_cols=55 Identities=25% Similarity=0.467 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEE
Q 023767 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRV 77 (277)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (277)
.++.++|+..+..|+- ..|.... .|| ||.|.+..+|.+++...++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5789999999999963 4444432 344 89999999999999999999888877765
No 208
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.57 E-value=0.089 Score=44.08 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=55.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEEecCC----CcEEEEEEechhHHHHHHHhcCCCeecccc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGD--VCFSQVFRDRG----GMTGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~----~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
..++||+||-+.+|.+||.+.+...|- +..++++.+.. .|||+|.........+.++.|-.+.|.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 568999999999999999999988773 44445554433 359999999999999999999999999853
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.55 E-value=0.5 Score=39.02 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccceeeEEEEee
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVRVRE 185 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~~~~ 185 (277)
..-|.|-++++... .-|..+|.+||+|+..... .++.+-+|.|.+.-+|.+||. .||..|+|. .-|.|..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~g~---vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIIDGD---VMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeeccc---eEEeeee
Confidence 45677888877654 3467899999999766555 455589999999999999997 799999885 4445544
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.43 E-value=0.42 Score=41.65 Aligned_cols=66 Identities=11% Similarity=0.155 Sum_probs=58.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCCC--cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRGG--MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~--~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
...|+|-.+|..++..||..++..+- .|..+.++++... ..+.|.|.+.++|..-...+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 77899999999999999999999876 5778888887544 378999999999999999999999976
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.22 E-value=0.065 Score=49.99 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc--CCceEEEEEccCC
Q 023767 14 LPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF--DGYRLRVELAHGG 83 (277)
Q Consensus 14 l~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~a~~~ 83 (277)
.+-.++-.-|..+|..||.|.+.+...+ -..|.|+|...+.|..|+..|+|+.+ -|-+.+|.+|+.-
T Consensus 306 n~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 306 NAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred ccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445777889999999999999988643 56899999999999999999999765 5888999998854
No 212
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.15 E-value=0.47 Score=34.75 Aligned_cols=62 Identities=8% Similarity=0.110 Sum_probs=46.0
Q ss_pred CCCceEEEeCCCCCCC----HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCe
Q 023767 107 RSDYRVLVTGLPSSAS----WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSE 171 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~----~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~ 171 (277)
++..+|.|.=|..++. ...+...+..||+|..|.+.-.. .|.|.|.+...|..|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 4466777776655542 33455566789999998876443 69999999999999999988743
No 213
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=91.61 E-value=0.091 Score=43.69 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=3.6
Q ss_pred EEEEEccC
Q 023767 75 LRVELAHG 82 (277)
Q Consensus 75 l~v~~a~~ 82 (277)
|.+.+..+
T Consensus 163 mYiRYtqp 170 (453)
T KOG2888|consen 163 MYIRYTQP 170 (453)
T ss_pred eEEeecCC
Confidence 44444443
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.23 E-value=0.16 Score=42.53 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCceEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEEecCC----C-c--EEEEEEechhHHHHHHHhcCCCeecccc
Q 023767 108 SDYRVLVTGLPSSASWQDLK---DHMRRAGDVCFSQVFRDRG----G-M--TGIVDYTSYDDMKYAIRKLDRSEFRNAF 176 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~----~-~--~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 176 (277)
..+-+||-+|+..+..+.+. +.|.+||.|..|.+..+.. . + -++|.|...++|..||...+|..++|+.
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34567888888776544443 4788999999988887652 1 1 5899999999999999999999999865
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.02 E-value=2.3 Score=27.52 Aligned_cols=56 Identities=11% Similarity=0.200 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHhcC-----CeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccccee
Q 023767 118 PSSASWQDLKDHMRRAG-----DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFSR 178 (277)
Q Consensus 118 ~~~~~~~~l~~~f~~~g-----~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~ 178 (277)
-..++..+|..++...+ .|-.+.+... |+||+-.. +.|..++..|++..+.|+.+.
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS----
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCeeEE
Confidence 34678888999998765 4555666666 78888654 478899999999999995443
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=89.50 E-value=2.2 Score=32.68 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=57.2
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc-eEEEEEc
Q 023767 7 RTLYVGNLPGDTRM-----REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY-RLRVELA 80 (277)
Q Consensus 7 ~~l~V~nl~~~~t~-----~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~-~l~v~~a 80 (277)
++|++.+|+..+-. ....++|.+|-+..-+.+. .+.+..-|-|.+++.|..|...++...|.|. .+...++
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfa 87 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFA 87 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEc
Confidence 45788888776432 2345677777766666665 2356778999999999999999999999988 8888888
Q ss_pred cCCCC
Q 023767 81 HGGRR 85 (277)
Q Consensus 81 ~~~~~ 85 (277)
+....
T Consensus 88 Q~~~~ 92 (193)
T KOG4019|consen 88 QPGHP 92 (193)
T ss_pred cCCCc
Confidence 86544
No 217
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=88.27 E-value=0.46 Score=43.43 Aligned_cols=69 Identities=14% Similarity=0.006 Sum_probs=58.4
Q ss_pred CCCCCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecccce
Q 023767 104 VSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNAFS 177 (277)
Q Consensus 104 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~ 177 (277)
.+.++..++||+|+-..+..+-+..+...+|.|..+.... |||..|.....+..|+..++-..++|..+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 3455678999999999999999999999999887665443 89999999999999999988888877544
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=88.23 E-value=0.19 Score=40.87 Aligned_cols=66 Identities=20% Similarity=0.476 Sum_probs=45.2
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhhccCCeeEEEeec--------CCC-----CCcE---------EEE
Q 023767 5 SSRTLYVGNLPGD------------TRMREVEDLFYKYGPIVDIDLKI--------PPR-----PPGY---------AFL 50 (277)
Q Consensus 5 ~s~~l~V~nl~~~------------~t~~~l~~~F~~~G~v~~v~~~~--------~~~-----~~g~---------~fV 50 (277)
-..||++.+||-. -+++.|...|+.||.|..|.++. ++. ..|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3468899998764 35778999999999999999843 221 2344 345
Q ss_pred EEcChHHHHHHHHhcCCccc
Q 023767 51 EFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 51 ~f~~~~~a~~A~~~l~~~~~ 70 (277)
+|...---..||..|.|+.+
T Consensus 228 qfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHhHHHHHHHHhcchH
Confidence 66555556667777777554
No 219
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.94 E-value=1.2 Score=38.24 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
.++|-|.++|.....+||..+|+.|+ .--+|.++. ...||..|.....|..|+.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD----dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD----DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee----cceeEEeecchHHHHHHhh
Confidence 46899999999999999999999996 444455543 3489999999999999998
No 220
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.92 E-value=0.27 Score=46.16 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=48.8
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeec
Q 023767 113 LVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFR 173 (277)
Q Consensus 113 ~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~ 173 (277)
.+.|.+-..+-.-|..+|.+||.|..++..++-+ .|.|+|...+.|..|++.|+|+++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccc
Confidence 3334444556677999999999999999877754 7999999999999999999999874
No 221
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=87.69 E-value=2.7 Score=32.71 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=40.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcC--CCeecccc
Q 023767 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLD--RSEFRNAF 176 (277)
Q Consensus 122 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~--g~~~~g~~ 176 (277)
..+.|+++|..++.+....+...-. -..|.|.+.+.|..|...|+ +..+.|..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~ 62 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGKR 62 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTEE
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCCc
Confidence 4578999999999887766654432 47899999999999999999 99999943
No 222
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=87.69 E-value=2.7 Score=28.09 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=44.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
.-|+--+++.++..+|++.++. || .|..|..........=|||.+...+.|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3455567889999999999997 66 8888888665555667999999998888765433
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=87.28 E-value=3.2 Score=27.22 Aligned_cols=56 Identities=13% Similarity=0.191 Sum_probs=43.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
.-|+-.+++.++..+|++.++. || .|..|..........=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 4566677899999999999997 56 78888876555455679999998888877544
No 224
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.89 E-value=2.2 Score=35.06 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcCh-------HHHHHHHHhcC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDY-------RDAEDAIRGRD 66 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~-------~~a~~A~~~l~ 66 (277)
.+-|+++||+.++...||+..+...| ....+.+. .+.+-||+.|.+. +++.+++..+|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 34599999999999999999988776 33344443 3478899999753 45555555443
No 225
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.11 E-value=0.35 Score=40.37 Aligned_cols=7 Identities=0% Similarity=0.472 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 023767 126 LKDHMRR 132 (277)
Q Consensus 126 l~~~f~~ 132 (277)
|.+-|.+
T Consensus 229 Id~~ie~ 235 (453)
T KOG2888|consen 229 IDEKIEE 235 (453)
T ss_pred HHHHHHh
Confidence 3344443
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.00 E-value=0.78 Score=32.76 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHH-HHHHH
Q 023767 8 TLYVGNLPGD---------TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDA-EDAIR 63 (277)
Q Consensus 8 ~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a-~~A~~ 63 (277)
++.|-|++.. ++.++|.+.|..|.+++-..+.....+.|+++|+|..--.. ..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 4667777553 45678999999998876555544445689999999754443 34554
No 227
>PF14893 PNMA: PNMA
Probab=82.41 E-value=1.7 Score=37.12 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=46.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEe---ec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceE
Q 023767 1 MSSRSSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDL---KI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (277)
Q Consensus 1 ~~~~~s~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v~~---~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (277)
|+-++.+.|.|.+||.++++++|++.+.. +-+.-...| +. .......|+|+|...- +.++- =..+.-.|-..
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~--n~~~i-P~~i~g~gg~W 89 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV--NYSLI-PREIPGKGGPW 89 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc--chhhC-chhcCCCCCce
Confidence 66788899999999999999999988764 223333333 11 1223567899987432 22221 00112235567
Q ss_pred EEEEcc
Q 023767 76 RVELAH 81 (277)
Q Consensus 76 ~v~~a~ 81 (277)
.|.+-.
T Consensus 90 ~Vv~~p 95 (331)
T PF14893_consen 90 RVVFKP 95 (331)
T ss_pred EEEecC
Confidence 766644
No 228
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=80.58 E-value=9.8 Score=31.42 Aligned_cols=17 Identities=29% Similarity=0.131 Sum_probs=7.1
Q ss_pred EEEEcChHHHHHHHHhc
Q 023767 49 FLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 49 fV~f~~~~~a~~A~~~l 65 (277)
+|-|++...++-.+..|
T Consensus 56 ilgfEDdVViefvynqL 72 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQL 72 (354)
T ss_pred hhccccchhHHHHHHHH
Confidence 34444444444444333
No 229
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=80.53 E-value=14 Score=24.73 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=42.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHhc
Q 023767 112 VLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 112 l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~a~~a~~~l 167 (277)
-|+-..+..++..+|++.+.. || .|..|....-+.+ ..|+|.+..-.+|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 444456778999999999987 66 6777877666554 38999999999998876544
No 230
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=78.75 E-value=16 Score=23.97 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHhc
Q 023767 111 RVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 111 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~a~~a~~~l 167 (277)
.-|+..++..++..+|+..+.. |+ .|..|....-+.+ ..|+|.+..-+.|.+....+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3455667889999999999987 56 6777776655544 38999999988888776544
No 231
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=77.28 E-value=2.6 Score=36.23 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=50.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecC-----CCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIP-----PRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~-----~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
-..|.|.+||+.+++.+|.+-...|- .|....+... ..-.+.|||.|..+++.......++|..|.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 45788999999999999999888864 4444444311 122467999999999999999989986553
No 232
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=77.01 E-value=16 Score=23.13 Aligned_cols=50 Identities=16% Similarity=0.182 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 120 SASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 120 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
.++.++|+..+..|+-. .|..+.. | -||.|.+..+|+++....+|..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC-E-EEEEECChHHHHHHHHhcCCCEEEE
Confidence 57789999999998743 3333333 2 4699999999999999999998876
No 233
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=75.81 E-value=20 Score=33.07 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=29.3
Q ss_pred CCCCceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEEecC
Q 023767 106 RRSDYRVLVTGLPSS-ASWQDLKDHMRRAGDVCFSQVFRDR 145 (277)
Q Consensus 106 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 145 (277)
......+.|.+++.+ ++..--.+++.+.|++..|.|.+..
T Consensus 58 QenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 58 QENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred ccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 345678889888875 5555566778889999888777654
No 234
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=73.94 E-value=0.41 Score=42.78 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGY 73 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~ 73 (277)
-+++||+.|++|+++-.+|..++..+--+..+.+-. .+....+++|.|.---....|+.+||+.-+.-.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 357899999999999999999999886666666632 234456789999877777778777888766443
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.53 E-value=34 Score=28.38 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=38.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechh
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYD 158 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~ 158 (277)
..+-|+++||+.++...||+..+.+.+.+- +.+.+...-+.||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 356799999999999999999999877432 34455555567999997643
No 236
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.28 E-value=32 Score=31.52 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCCceEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEEec--------------C-------------C--------
Q 023767 107 RSDYRVLVTGLPSS-ASWQDLKDHMRRA----GDVCFSQVFRD--------------R-------------G-------- 146 (277)
Q Consensus 107 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~~~--------------~-------------~-------- 146 (277)
.....|-|.||.+. +...+|..+|..| |.|+.|.|+.. + .
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45778999999987 7889999988854 58888887621 2 0
Q ss_pred -------C---------cEEEEEEechhHHHHHHHhcCCCeecccceeeEEE
Q 023767 147 -------G---------MTGIVDYTSYDDMKYAIRKLDRSEFRNAFSRSYVR 182 (277)
Q Consensus 147 -------~---------~~~fV~f~~~~~a~~a~~~l~g~~~~g~~~~~~i~ 182 (277)
. .||.|+|.+.+.|.+....++|.++..-....-++
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLR 303 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLR 303 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeee
Confidence 0 18999999999999999999999997643333333
No 237
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=73.11 E-value=21 Score=31.10 Aligned_cols=38 Identities=16% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhhcc----CCeeEEEeec
Q 023767 3 SRSSRTLYVGNLPGD-TRMREVEDLFYKY----GPIVDIDLKI 40 (277)
Q Consensus 3 ~~~s~~l~V~nl~~~-~t~~~l~~~F~~~----G~v~~v~~~~ 40 (277)
+.+++.|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 568899999999986 7889999999876 5777777653
No 238
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=71.96 E-value=16 Score=27.15 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=39.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCCCCCcEEEEEEcChHHHHHH
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDA 61 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A 61 (277)
.-|+--+...++-.+|.+.++. |+ .|..|+.........=|||.+....+|...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 3455556779999999999986 65 777777765544455799999877775543
No 239
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=70.72 E-value=6 Score=30.29 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=32.8
Q ss_pred CCHHHHHHHhhc-cCCeeEEEeec--CC--CCCcEEEEEEcChHHHHHHHH
Q 023767 18 TRMREVEDLFYK-YGPIVDIDLKI--PP--RPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 18 ~t~~~l~~~F~~-~G~v~~v~~~~--~~--~~~g~~fV~f~~~~~a~~A~~ 63 (277)
.|+++|..+..- -|.+..|.|.. ++ ..+|-.||.|.+.++|.++++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 455555444331 17999999843 23 557899999999999999876
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.13 E-value=12 Score=23.27 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=16.5
Q ss_pred HHHHHHhhccCCeeEEEee
Q 023767 21 REVEDLFYKYGPIVDIDLK 39 (277)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~ 39 (277)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999888774
No 241
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=68.54 E-value=13 Score=24.97 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~ 53 (277)
...-|||+|++..+-+.-...+.+..++-.-+.+..+....||+|-.+-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 3456999999988877766666666655555555445557899988773
No 242
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=67.91 E-value=11 Score=32.15 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=38.7
Q ss_pred EEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHH
Q 023767 48 AFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLK 127 (277)
Q Consensus 48 ~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 127 (277)
|||.|.++.+|..|.+.+.... +..+.|..|.. ...|...||.....+..++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe--------------------------P~DI~W~NL~~~~~~r~~R 52 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE--------------------------PDDIIWENLSISSKQRFLR 52 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC--------------------------cccccccccCCChHHHHHH
Confidence 7999999999999999554432 34456666554 3357778886666666665
Q ss_pred HHHHh
Q 023767 128 DHMRR 132 (277)
Q Consensus 128 ~~f~~ 132 (277)
..+..
T Consensus 53 ~~~~~ 57 (325)
T PF02714_consen 53 RIIVN 57 (325)
T ss_pred HHHHH
Confidence 55443
No 243
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=67.07 E-value=7.4 Score=33.53 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=50.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCC------cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGG------MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
...+.|.+||+..++++|.+....+-. +....+...... ..|+|.|..+++.+.-...++|..+-.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 467889999999999999999888764 433444322111 268999999999999999999988754
No 244
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=66.93 E-value=37 Score=25.23 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=41.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEEecCCC-cEEEEEEechhHHHHHHHh
Q 023767 110 YRVLVTGLPSSASWQDLKDHMRR-AG-DVCFSQVFRDRGG-MTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 110 ~~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~~fV~f~~~~~a~~a~~~ 166 (277)
.+.++..+...++..+|.+.++. |+ .|..|..+.-+.+ ..|||.+....+|.+....
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 35666667889999999999997 66 5777766655544 3899999888877665543
No 245
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=66.45 E-value=24 Score=22.44 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=41.2
Q ss_pred HHHHHHhhccC-CeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 21 REVEDLFYKYG-PIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
++|.+-|...| +|..|.-+. ++.+....||+.....+...+ |+=..+.++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCC
Confidence 57888888888 777776654 345567888988877663333 445677888888887553
No 246
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.49 E-value=16 Score=23.23 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=41.7
Q ss_pred HHHHHHhhccC-CeeEEEeecC---CCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 21 REVEDLFYKYG-PIVDIDLKIP---PRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 21 ~~l~~~F~~~G-~v~~v~~~~~---~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
++|.+-|...| +|..+.-+.. +.+...-||+.....+... .|+=..+.|+.+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 57888888888 8888777553 3456778888876655444 355567889998888754
No 247
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=63.17 E-value=6.3 Score=31.58 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
....+||+-|||..+|++.|..+..++|-++.+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35678999999999999999999999997776655
No 248
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=62.53 E-value=34 Score=25.68 Aligned_cols=33 Identities=33% Similarity=0.361 Sum_probs=25.9
Q ss_pred eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 023767 33 IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 33 v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~ 67 (277)
|.++.++. ..+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~--~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPP--ELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccC--CCCcEEEEEEEChHHHHHHHhcCCC
Confidence 55655543 4689999999988999999987765
No 249
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=60.05 E-value=30 Score=23.88 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=38.8
Q ss_pred CCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCC
Q 023767 17 DTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~ 67 (277)
+-++++|..+...-|.|.+|.+..+.-+.--+.+...+..+++.+++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 446788888888778999999966544345678889999999999987764
No 250
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=59.74 E-value=34 Score=20.20 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=30.4
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHH
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAI 62 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~ 62 (277)
.-.+|-.+|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 11 ~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 11 RLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred hHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 3456667777776 8888887554445667777888877777664
No 251
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.51 E-value=44 Score=29.22 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=46.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEEecCCCcEEEEEEechhHHHHHHHh
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~ 166 (277)
-...|-|-++|.....+||...|+.|+. -..|.++.+. .||..|.....|..||..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 4568899999999988999999999984 4456666664 589999999999999973
No 252
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=58.68 E-value=19 Score=24.72 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=31.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcCh
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY 55 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~ 55 (277)
..-|||++++..+-+.--..+-+.++.-.-+-+..+....||+|-.+.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 45699999888776655555555555433333334445569998887643
No 253
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=57.51 E-value=89 Score=29.58 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---cCCeeEEEeecCCCCCcEEE-EEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~---~G~v~~v~~~~~~~~~g~~f-V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
.++|.|..||+.++.+.|.+.... -|.+. |.=..+-...+..| |++.....++..+..|-. -..|++.++.
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Lyk----~t~lq~s~~~ 294 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEALYA----YTDCEVSISV 294 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHHHH----hcCceeEeee
Confidence 468999999999999998876543 24543 21111111234554 556655566655543322 1234444432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhc
Q 023767 82 GGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (277)
...+.+.+.|..++..+|.+.|-.+
T Consensus 295 ---------------------------n~~~i~~~~p~~~~l~~il~~~~~~ 319 (635)
T PRK09631 295 ---------------------------NLLVIKDRYPVIYTVTDIIKFHAEH 319 (635)
T ss_pred ---------------------------eEEEEECCcCcCCCHHHHHHHHHHH
Confidence 3355566777777776666665533
No 254
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.00 E-value=6.2 Score=26.60 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFY 28 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~ 28 (277)
-..++|.|.|||..+.+++|+..++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4678999999999999999986543
No 255
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.47 E-value=82 Score=29.47 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=65.0
Q ss_pred CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC--Cccc------CCceEEEEEccCCCCCCCCC
Q 023767 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD--GYNF------DGYRLRVELAHGGRRHSSSM 90 (277)
Q Consensus 19 t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~--~~~~------~g~~l~v~~a~~~~~~~~~~ 90 (277)
-.++|.+.|..-+-|..|.+.. .||-++.+....-+......+. +..+ .|+.|.|+|..++.
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------ 128 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------ 128 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC------
Confidence 3455566665545567777752 4566665554444444433333 2222 57899999987654
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEEecCC
Q 023767 91 DRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAG-DVCFSQVFRDRG 146 (277)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 146 (277)
..-++|+.+-..+=-+-|..++...| .|+......|.+
T Consensus 129 ------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G 167 (577)
T COG0018 129 ------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWG 167 (577)
T ss_pred ------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHH
Confidence 34578888888888899999999999 677766666643
No 256
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=55.39 E-value=33 Score=22.78 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=25.0
Q ss_pred CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcc
Q 023767 32 PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYN 69 (277)
Q Consensus 32 ~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~ 69 (277)
.|..+..+ +..+||.|||=.+++++..|+..+.+..
T Consensus 33 ~I~Si~~~--~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP--DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE---TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe--CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45554443 3469999999999999999999887643
No 257
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=54.90 E-value=60 Score=21.92 Aligned_cols=45 Identities=9% Similarity=-0.043 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcC-CeeEEEEEecCCCcEEEEEEechhHHHHHHHhc
Q 023767 123 WQDLKDHMRRAG-DVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 123 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l 167 (277)
.+.+++++..+| ++..+.+..+.......+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456777888777 788888888877767888898888887766444
No 258
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=54.50 E-value=81 Score=22.90 Aligned_cols=72 Identities=15% Similarity=0.082 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCC---CCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 5 SSRTLYVGNLPGD---TRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 5 ~s~~l~V~nl~~~---~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+...|.|...... .+...|.+.+..-| .++.+... .+...|.|.+.++-.+|.+.|....-++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4456777776444 57788889998887 66666554 347889999999999999888765545555555544
Q ss_pred c
Q 023767 81 H 81 (277)
Q Consensus 81 ~ 81 (277)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 259
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=52.11 E-value=39 Score=22.94 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=25.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeec
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI 40 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~ 40 (277)
..|+-.++..++-.||++.|+. || .|..|....
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 4566667889999999999997 66 777777643
No 260
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=51.79 E-value=56 Score=22.39 Aligned_cols=49 Identities=14% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHh-------hcc-CCeeEEEe--------ecCCCCCc-EEEEEEcChHHHHHHHH
Q 023767 15 PGDTRMREVEDLF-------YKY-GPIVDIDL--------KIPPRPPG-YAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 15 ~~~~t~~~l~~~F-------~~~-G~v~~v~~--------~~~~~~~g-~~fV~f~~~~~a~~A~~ 63 (277)
.++++++++..+. ... |+|..+.. +..+...| |.++.|.-..++.+.++
T Consensus 15 ~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 15 KPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 5677777766554 443 47766654 22344455 67889987777777665
No 261
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=51.44 E-value=56 Score=20.14 Aligned_cols=44 Identities=20% Similarity=0.307 Sum_probs=30.3
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
.-.+|-++|.+.| .|..+....... +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 5677888898877 788887754433 4555566767667777665
No 262
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.76 E-value=42 Score=21.60 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=27.6
Q ss_pred HhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 26 LFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 26 ~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
-+..||.|..+-=. ..|+. -|.+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYvv-lYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYVV-LYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEEE-EEECHHHHHHHHHHHhcCCC
Confidence 34589998886443 34554 47899999999988876543
No 263
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=50.33 E-value=91 Score=23.00 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=30.0
Q ss_pred EEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 35 DIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 35 ~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
.+.++.......+-+..+.+.. ...++..|.+..+.|++|.|....
T Consensus 16 f~~WP~~~~~~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 16 FIEWPDSAPSSPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred hccCCCCCCCCCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 3344433123445555665555 445677789999999999998764
No 264
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=50.26 E-value=36 Score=24.27 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=25.0
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHHHhcCCeeEEEEEecCCC--cEEEEEEechh
Q 023767 110 YRVLVTGLPSS---------ASWQDLKDHMRRAGDVCFSQVFRDRGG--MTGIVDYTSYD 158 (277)
Q Consensus 110 ~~l~v~~l~~~---------~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~~fV~f~~~~ 158 (277)
.++.|.|++.. .+.++|.+.|..|..+. +....+..+ +++.|+|...-
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 35666666432 35688999999998875 444455443 58999997754
No 265
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=47.38 E-value=47 Score=22.47 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=33.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeecCC-----CCC--------cEEEEEEcChHH
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKIPP-----RPP--------GYAFLEFEDYRD 57 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~~~-----~~~--------g~~fV~f~~~~~ 57 (277)
..|+-.+++.+|-.||++.++. || .|..|...... ... .-|+|++...+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 3455667889999999999996 66 77777763311 111 358888876643
No 266
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=46.82 E-value=40 Score=22.68 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc-cCCeeEEEeecCCCCCcEEEEEEcC
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFED 54 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~~fV~f~~ 54 (277)
...-|||++++..+-+.--..+-+. .++-.-+.+..+....||.|-.+.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 3456899999887765544444444 3443333333445567888877654
No 267
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=46.60 E-value=98 Score=27.92 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=32.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CC---eeEEEeecCCCCCcEEE-EEEcChHHHHHHHH
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY---GP---IVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIR 63 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~---G~---v~~v~~~~~~~~~g~~f-V~f~~~~~a~~A~~ 63 (277)
++|.|+.||+.++.+.+.+..... +. |.++.=..+ ..+..| |++.....++..+.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~--~~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESD--REGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccC--CCceEEEEEECCCccHHHHHH
Confidence 689999999999999988766532 32 223221212 236666 45555555544433
No 268
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.83 E-value=11 Score=31.01 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhcCCeeEEEEEec---------CCC-----cE---------EEEEEechhHHHHHHHhcCCCeec----
Q 023767 121 ASWQDLKDHMRRAGDVCFSQVFRD---------RGG-----MT---------GIVDYTSYDDMKYAIRKLDRSEFR---- 173 (277)
Q Consensus 121 ~~~~~l~~~f~~~g~v~~~~~~~~---------~~~-----~~---------~fV~f~~~~~a~~a~~~l~g~~~~---- 173 (277)
.+++.|...|..||.|..|+|+.- ... +| |||+|-..-....|+..|.|..+.
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 467889999999999999887621 111 12 345555555556666666665543
Q ss_pred ccceeeEEEEeec
Q 023767 174 NAFSRSYVRVREY 186 (277)
Q Consensus 174 g~~~~~~i~~~~~ 186 (277)
+......+.|+.+
T Consensus 253 ~~ffqanvkvdfd 265 (445)
T KOG2891|consen 253 DGFFQANVKVDFD 265 (445)
T ss_pred Ccccccccccccc
Confidence 3333345555544
No 269
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.77 E-value=18 Score=19.72 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhccCC
Q 023767 16 GDTRMREVEDLFYKYGP 32 (277)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (277)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46889999999987653
No 270
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=44.21 E-value=1.1e+02 Score=26.18 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=30.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEc
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFE 53 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~ 53 (277)
.+..++|+|-+-.+---+.|.+....-|--....+.++ .+.|.|-|-..
T Consensus 79 ~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d-~~TGtCavli~ 127 (343)
T KOG2854|consen 79 QPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKED-GPTGTCAVLIT 127 (343)
T ss_pred CCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccC-CCCceEEEEEe
Confidence 46689999988877667777777776663333333333 34555554443
No 271
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=43.54 E-value=1e+02 Score=20.81 Aligned_cols=45 Identities=16% Similarity=0.050 Sum_probs=32.2
Q ss_pred HHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc
Q 023767 20 MREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 20 ~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
.+.+.++++.+| +++++.+.. |.---.+.+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~-G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL-GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec-CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 455788888875 888888753 334457788999998888765434
No 272
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=43.27 E-value=36 Score=28.10 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=25.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
....|+|||++++..-|..++...-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 46789999999999999999987655544433
No 273
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=42.05 E-value=1.3e+02 Score=27.13 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhc---cCCeeEEEeecCCCCCcEEE-EEEcChHHHHHHHHhc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGR 65 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~---~G~v~~v~~~~~~~~~g~~f-V~f~~~~~a~~A~~~l 65 (277)
.++|.|..||+.++.+.|.+.... -|.|.-..+. +....+..| |++....+++..+..|
T Consensus 220 ~~~ivItEIPy~~~t~~lie~I~~l~~~gki~I~~i~-D~s~~~v~i~I~Lk~~~~~~~vl~~L 282 (479)
T PRK09630 220 DKTLLIKEICPSTTTETLIRSIENAAKRGIIKIDSIQ-DFSTDLPHIEIKLPKGIYAKDLLRPL 282 (479)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCCccceee-ccCCCCceEEEEECCCCCHHHHHHHH
Confidence 468999999999999998876543 2555311121 111123444 5666666666666544
No 274
>PRK02886 hypothetical protein; Provisional
Probab=40.89 E-value=67 Score=21.57 Aligned_cols=38 Identities=21% Similarity=0.391 Sum_probs=27.0
Q ss_pred hhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 27 FYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 27 F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
+..||.|..+.=. ..|+ |-|.+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4589998886432 3454 457899999999988876543
No 275
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.85 E-value=62 Score=27.11 Aligned_cols=54 Identities=7% Similarity=0.092 Sum_probs=43.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------CCcEEEEEEechhHHHH
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR-----------GGMTGIVDYTSYDDMKY 162 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----------~~~~~fV~f~~~~~a~~ 162 (277)
...|.+.|+...++-..+...|.+||.|+.|.++.+. ......+.|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 4578889999999999999999999999999998765 11267788888876643
No 276
>PRK02302 hypothetical protein; Provisional
Probab=40.57 E-value=68 Score=21.66 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.9
Q ss_pred hhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 27 FYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 27 F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
+..||.|..+.=. ..|+ |-|.+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4589998886432 3455 457899999999988876543
No 277
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.02 E-value=25 Score=27.14 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=43.4
Q ss_pred ceEEEeCCCCCC-----CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhcCCCeeccc
Q 023767 110 YRVLVTGLPSSA-----SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDRSEFRNA 175 (277)
Q Consensus 110 ~~l~v~~l~~~~-----~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g~~~~g~ 175 (277)
+.+.+.+++..+ .......+|.+|.+.....+.+.. +..-|.|.+++.|..|..++++..+.|+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~ 79 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK 79 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC
Confidence 456677776553 233455666666655444433331 2466889999999999999999999986
No 278
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=38.95 E-value=2.7e+02 Score=27.45 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=55.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhhc---cCCeeEEEeecCCCCCcEEE-EEEcChHHHHHHHHhcCCcccCCceEEEEEc
Q 023767 5 SSRTLYVGNLPGDTRMREVEDLFYK---YGPIVDIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGRDGYNFDGYRLRVELA 80 (277)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~l~~~F~~---~G~v~~v~~~~~~~~~g~~f-V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 80 (277)
+.++|.|.-||+.++.+.|.+-... =|.|. |.-..+-...+.-| |++....+++..+..|- .-..|++.++
T Consensus 240 ~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~Ly----~~T~lq~s~s 314 (869)
T PRK12758 240 DKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDALY----AFTDCEVSIS 314 (869)
T ss_pred CCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHHH----hhcCceeEee
Confidence 3568999999999988887665543 25544 22222211234544 56666666666555442 1123444443
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeCCCCCCCHHHHHHHHHhc
Q 023767 81 HGGRRHSSSMDRYSSYSSGGSRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRA 133 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 133 (277)
. ..++.+.+.|..++..+|...|-.+
T Consensus 315 ~---------------------------n~~vi~d~~P~~~~l~eiL~~~~~~ 340 (869)
T PRK12758 315 P---------------------------NACVIIDNKPHFLGVSDILRRSTDH 340 (869)
T ss_pred e---------------------------eEEEEECCeeeECCHHHHHHHHHHH
Confidence 3 3456667778777766666555543
No 279
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=5.3 Score=35.03 Aligned_cols=75 Identities=8% Similarity=-0.127 Sum_probs=54.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
+...++..||..++++++.-+|+-||.|..+.+.. .+...-.+||.... ++|..+|..+.-..++|..+.|.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 35567889999999999999999999999888832 33445566776543 44555665565667778777777766
No 280
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=38.81 E-value=70 Score=21.73 Aligned_cols=54 Identities=11% Similarity=0.012 Sum_probs=34.6
Q ss_pred cCCCCCCCHHHHHHHhhccCC-eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023767 12 GNLPGDTRMREVEDLFYKYGP-IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G~-v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~ 66 (277)
..+.+.++...|..-|-.-|. -.-..+. ...=+.+|.|.|.+.+.+..|++.|-
T Consensus 18 YS~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 18 YSQTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred EecCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHHH
Confidence 345677888888877765552 1111111 01114689999999999999988664
No 281
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.58 E-value=39 Score=21.61 Aligned_cols=27 Identities=19% Similarity=0.147 Sum_probs=21.9
Q ss_pred cEEEEEEcChHHHHHHHHhcCCcccCC
Q 023767 46 GYAFLEFEDYRDAEDAIRGRDGYNFDG 72 (277)
Q Consensus 46 g~~fV~f~~~~~a~~A~~~l~~~~~~g 72 (277)
.+++|.|.+..+|.+|-+.|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 478999999999999999887654433
No 282
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=36.73 E-value=1.2e+02 Score=19.55 Aligned_cols=43 Identities=21% Similarity=0.221 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHhc
Q 023767 124 QDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKL 167 (277)
Q Consensus 124 ~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l 167 (277)
.+|.+.+.++| +.-+.+.-...+++.|+.+.+.+.+..+++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 45677777888 33344433323458888888888888877765
No 283
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.64 E-value=98 Score=18.70 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=25.9
Q ss_pred CHHHHHHHhhccC-CeeEEEeecC-CCCCcEEEEEEcChHHHHHHHHhc
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIP-PRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~-~~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
...+|-.+|..+| .|..+.+... +....+..|...+. +...+++.|
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 5677888888886 7777766432 22233444555543 444444433
No 284
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=36.49 E-value=98 Score=18.63 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhhccC-CeeEEEeecCC-CCCcEEEEEEcC
Q 023767 16 GDTRMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFED 54 (277)
Q Consensus 16 ~~~t~~~l~~~F~~~G-~v~~v~~~~~~-~~~g~~fV~f~~ 54 (277)
..-.-.+|-++|..+| .|..+...... .......+.+.+
T Consensus 9 ~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 9 VPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred CCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 3345678889999887 78888775432 223334444444
No 285
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=36.34 E-value=1.5e+02 Score=20.69 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCeeEEEEEecC-CCcEEEEEEechhHHHHHHH
Q 023767 124 QDLKDHMRRAGDVCFSQVFRDR-GGMTGIVDYTSYDDMKYAIR 165 (277)
Q Consensus 124 ~~l~~~f~~~g~v~~~~~~~~~-~~~~~fV~f~~~~~a~~a~~ 165 (277)
.+|..+.++.|.-.+..+.... +.-||++++.+.+....++.
T Consensus 27 PE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 3677888888865554333332 33599999996666555553
No 286
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.19 E-value=1.2e+02 Score=19.69 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=41.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc-------CCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCccc
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKY-------GPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNF 70 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~-------G~v~~v~~~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~ 70 (277)
-|...+||..+|.++|....... ..|..+.-.. ....+-||+.+=.+++.+.++-+.- |..+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 35677899989999988766443 2344444322 2345778888888998888877633 5443
No 287
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=36.05 E-value=80 Score=28.88 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=42.8
Q ss_pred EEcCCCCCCC---HHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceE
Q 023767 10 YVGNLPGDTR---MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRL 75 (277)
Q Consensus 10 ~V~nl~~~~t---~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (277)
+||||+.-.. ...|..+-.+||+|-.++|=. .=.|...+.+.|..|+. -++..|.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 5677755433 345666667899999887731 23677788999999998 67888888875
No 288
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=34.91 E-value=1.1e+02 Score=18.92 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=38.8
Q ss_pred CHHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHHHHHHHh
Q 023767 122 SWQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDMKYAIRK 166 (277)
Q Consensus 122 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~ 166 (277)
..+++.+.+.....|..|....+.......|.+.+.++....+..
T Consensus 11 ~~~~~~~~l~~~p~V~~~~~vtG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 11 AYDEFAEALAEIPEVVECYSVTGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHHTSTTEEEEEEESSSSSEEEEEEESSHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCEEEEEEEeCCCCEEEEEEECCHHHHHHHHHH
Confidence 467888999999999999999988777889999999999888554
No 289
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=34.66 E-value=19 Score=30.83 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=39.8
Q ss_pred CCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCc
Q 023767 18 TRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~ 68 (277)
++...|.+++.+.|.|..-.|..+ .+.|.+||-+..+++++++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rt-FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRT-FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHH-hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 446778888889998887666433 33788999999999999999988864
No 290
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.52 E-value=42 Score=26.70 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=18.5
Q ss_pred HHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChH
Q 023767 21 REVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYR 56 (277)
Q Consensus 21 ~~l~~~F~-~~G~v~~v~~~~~~~~~g~~fV~f~~~~ 56 (277)
++|.+.|. .||. ...++..+.||||+|.+.=
T Consensus 89 edL~~EF~~~~~~-----~~~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 89 EDLAQEFDKSYGK-----NIIQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHhccc-----ccCCccCCCeeEEehhHHH
Confidence 45555554 4553 1223356889999998643
No 291
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=33.77 E-value=1.2e+02 Score=23.95 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=33.3
Q ss_pred CHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023767 19 RMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 19 t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~ 66 (277)
+.++..+++..++.-. +.++.++...|-+.+...+.++|..|+..+-
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 6778888888776433 5566666555555666799999999987664
No 292
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=33.15 E-value=2e+02 Score=26.79 Aligned_cols=36 Identities=22% Similarity=0.140 Sum_probs=25.7
Q ss_pred CCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccC
Q 023767 44 PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHG 82 (277)
Q Consensus 44 ~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 82 (277)
..|-|. .|.++++|.+|+. ++..-.|..|.|.+.-+
T Consensus 397 ~~GpA~-VF~see~a~~ai~--~g~I~~gdVvViRyeGP 432 (552)
T PRK00911 397 FTGPAR-VFDSEEEAMEAIL--AGKIKAGDVVVIRYEGP 432 (552)
T ss_pred eeeeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCC
Confidence 344454 4999999999998 46666677777766554
No 293
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=33.03 E-value=22 Score=34.12 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=9.7
Q ss_pred CCCcEEEEEEcChHHHHH
Q 023767 43 RPPGYAFLEFEDYRDAED 60 (277)
Q Consensus 43 ~~~g~~fV~f~~~~~a~~ 60 (277)
.+..|+.+.+....++..
T Consensus 57 ~~~~y~~t~~~~~qq~a~ 74 (1194)
T KOG4246|consen 57 YGSVYGSTSLSSSQQLAT 74 (1194)
T ss_pred ccccccccchhhhhhhHH
Confidence 445566666655544443
No 294
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=32.97 E-value=8.2 Score=34.96 Aligned_cols=68 Identities=12% Similarity=0.089 Sum_probs=49.6
Q ss_pred CCCceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC----cEEEEEEechhHHHHHHHhcCCCeecc
Q 023767 107 RSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDRGG----MTGIVDYTSYDDMKYAIRKLDRSEFRN 174 (277)
Q Consensus 107 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~~fV~f~~~~~a~~a~~~l~g~~~~g 174 (277)
...+.++|.|++++++..+|..+|..+.-+..+.+..+... .+++|.|.---....|+..||+..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 34568999999999999999999999887766655544322 268888876666666666666655543
No 295
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=32.82 E-value=1.4e+02 Score=27.32 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=47.3
Q ss_pred EcCCCCCCCHHHHHHHhhc-cCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 11 VGNLPGDTRMREVEDLFYK-YGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 11 V~nl~~~~t~~~l~~~F~~-~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
+-++|+..-..++...+.. ++..... ..-.....|+++.|.++..+.+|+..++|..+.+..+.+..+...
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~--tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSK--TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred eeccCchhhhhHHHhhhhhhccccccc--CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3445555555555544433 3322221 111233579999999999999999999999999888888877654
No 296
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=32.75 E-value=1.9e+02 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCCCcEEEEEEcChHHHHHHHHhcCC
Q 023767 42 PRPPGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 42 ~~~~g~~fV~f~~~~~a~~A~~~l~~ 67 (277)
...+||.||++...++...++..+.|
T Consensus 35 ~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 35 ESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred CCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 45799999999988888888887766
No 297
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.09 E-value=1.2e+02 Score=18.53 Aligned_cols=47 Identities=21% Similarity=0.194 Sum_probs=29.3
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCC-CCCcEEEEEEcChHHHHHHHHhc
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~-~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
...+|-++|..+| .|..+...... ...+...+.+...++...+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4667888998887 77777653321 12455567776555656555544
No 298
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=31.93 E-value=1.5e+02 Score=19.32 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=44.6
Q ss_pred EcCCCCCCCHHHHHHHhh-ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEE
Q 023767 11 VGNLPGDTRMREVEDLFY-KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVEL 79 (277)
Q Consensus 11 V~nl~~~~t~~~l~~~F~-~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (277)
|--+|..+.-+||.+-.. .||.-.++.+... --.|-..++++-++|++.++. ...-+.|.+-.
T Consensus 13 Ii~f~RPvkf~dl~~kv~~afGq~mdl~ytn~-----eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 13 IIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN-----ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeEEEecc-----cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 345677788888876665 7998888777532 257888999999999997776 33444455443
No 299
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=31.92 E-value=97 Score=21.30 Aligned_cols=46 Identities=24% Similarity=0.349 Sum_probs=27.6
Q ss_pred eEEEcCCCCCCCHHHHH---HHhhccCCeeEEEe-----ecCCCCCcEEEEEEc
Q 023767 8 TLYVGNLPGDTRMREVE---DLFYKYGPIVDIDL-----KIPPRPPGYAFLEFE 53 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v~~-----~~~~~~~g~~fV~f~ 53 (277)
..|+.|||.++.+.++. .+|..+++-..|.. .....+.|++.+-+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 35889999999888765 45555554455544 223455666655443
No 300
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.87 E-value=1.8e+02 Score=20.29 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023767 20 MREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 20 ~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
..+|..++..+|.-..-.+.......-||++++.|.+..-+++.
T Consensus 26 WPE~~a~lk~agi~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAGIRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcCCceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 34678888888843333333333456799999996666555554
No 301
>PF15063 TC1: Thyroid cancer protein 1
Probab=31.79 E-value=32 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCe
Q 023767 10 YVGNLPGDTRMREVEDLFYKYGPI 33 (277)
Q Consensus 10 ~V~nl~~~~t~~~l~~~F~~~G~v 33 (277)
-+.||=.+++.++|+.||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 456788899999999999998864
No 302
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=31.69 E-value=1.2e+02 Score=24.05 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=36.8
Q ss_pred CCHHHHHHHhhccCC---eeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccC
Q 023767 18 TRMREVEDLFYKYGP---IVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFD 71 (277)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~ 71 (277)
.+.+++.+....+|. |...+++.-+..++=+...-.++++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 467888888877763 555555555666663333445789999988888887775
No 303
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.68 E-value=37 Score=25.05 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.1
Q ss_pred EEEcCCCCC-CCHHHHHHHhhccCCeeEEEeecC
Q 023767 9 LYVGNLPGD-TRMREVEDLFYKYGPIVDIDLKIP 41 (277)
Q Consensus 9 l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~~~~~ 41 (277)
|.|.|||.. .+++-|.++.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 678899998 577888999999999999988643
No 304
>CHL00030 rpl23 ribosomal protein L23
Probab=31.61 E-value=1.5e+02 Score=20.23 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=25.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeec
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI 40 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~ 40 (277)
..|+--++.+++..+|++.++. || .|..|+...
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 4566677889999999999997 66 777777743
No 305
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=31.47 E-value=33 Score=27.69 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=28.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQV 141 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 141 (277)
..++|+-|+|...+++.|..+..+.|.+..+.+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 458999999999999999999999997665443
No 306
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=31.03 E-value=72 Score=19.93 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=32.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEEecCCCcEEE-EEEechhHHHHHHHhcC
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCF-SQVFRDRGGMTGI-VDYTSYDDMKYAIRKLD 168 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~f-V~f~~~~~a~~a~~~l~ 168 (277)
.+.|.|+.+...-..+.+...+...|.-.. +.+.....-...+ -.|.+.++|..++..|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 456677766554454555555555564333 2222222222223 36899999999998887
No 307
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=30.18 E-value=1.9e+02 Score=20.54 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHhhccCCeeEEEee
Q 023767 14 LPGDTRMREVEDLFYKYGPIVDIDLK 39 (277)
Q Consensus 14 l~~~~t~~~l~~~F~~~G~v~~v~~~ 39 (277)
||+-+ +.|-.+|+.=|+|..|...
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItv 34 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITV 34 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEE
Confidence 56654 3578899999999998664
No 308
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=30.13 E-value=1.3e+02 Score=29.06 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=41.3
Q ss_pred EEEcCCC--CCCCHHHHHHHhhccC-CeeEEEeecCCC-CCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEE
Q 023767 9 LYVGNLP--GDTRMREVEDLFYKYG-PIVDIDLKIPPR-PPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVE 78 (277)
Q Consensus 9 l~V~nl~--~~~t~~~l~~~F~~~G-~v~~v~~~~~~~-~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (277)
|+|.+-. ..++...+.+||..|| +|+-++|..++. .+.-+. =.++-..||..||.....-..|...
T Consensus 312 I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~I----L~~eF~~ai~yLNqflp~e~rl~~i 381 (868)
T KOG1888|consen 312 IVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESI----LREEFENAIDYLNQFLPPENRLKYI 381 (868)
T ss_pred eEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHH----HHHHHHHHHHHHhccCCCcceeeee
Confidence 5555554 4678889999999998 888888876552 221111 2355567777777544444444433
No 309
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=29.50 E-value=42 Score=27.65 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=31.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhh--ccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHH
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFY--KYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~--~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
...++|+|||+.++..-|.+++. .||.+.-+ -+-..|.|++.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~--------------l~vq~e~a~rl~a 142 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV--------------LMVQKEVAERLLA 142 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE--------------EEEEHHHHHHHHT
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE--------------EEEehhhhhhccC
Confidence 56789999999999999999987 34433332 2234567777665
No 310
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=29.31 E-value=1.3e+02 Score=17.99 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcCh----HHHHHHHHh
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDY----RDAEDAIRG 64 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~----~~a~~A~~~ 64 (277)
|+.|.||.-.-....|.+.+...-.|..+.+... .+-+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888889999998877888888543 46788888744 455555553
No 311
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=29.04 E-value=51 Score=22.56 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=17.3
Q ss_pred cEEEEEEcChHHHHHHHHhc
Q 023767 46 GYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 46 g~~fV~f~~~~~a~~A~~~l 65 (277)
-|.+++|.+.+..++|++.+
T Consensus 67 vFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 67 VFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEcCchhHHHHHHHHh
Confidence 57899999999999998755
No 312
>PRK11901 hypothetical protein; Reviewed
Probab=29.02 E-value=3.7e+02 Score=23.07 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=36.0
Q ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC---CCcEEEE--EEechhHHHHHHHhcCCC
Q 023767 109 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDR---GGMTGIV--DYTSYDDMKYAIRKLDRS 170 (277)
Q Consensus 109 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~fV--~f~~~~~a~~a~~~l~g~ 170 (277)
.++|.|-.+ ..++.|..+..+.+ +..++++... ...|..| .|.+.++|..|+..|-..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 445555443 45777888887776 3334444332 2235444 489999999999987543
No 313
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.01 E-value=2.5e+02 Score=21.04 Aligned_cols=54 Identities=11% Similarity=0.217 Sum_probs=39.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEeec------------CCCCCc-EEEEEEcChHH
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKI------------PPRPPG-YAFLEFEDYRD 57 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v~~~~------------~~~~~g-~~fV~f~~~~~ 57 (277)
++...|++..+..-+++++..++.+.= +++..|.|-. +...+. |-+|.|++-..
T Consensus 85 kd~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 85 KDDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 344789999999999999999888753 5777777711 233344 88899987654
No 314
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=28.91 E-value=1.4e+02 Score=27.32 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=35.6
Q ss_pred CCHHHHHHHhh----ccCCeeEEEeecCC--CCCcEEEEEEcChHHHHHHHHhcC
Q 023767 18 TRMREVEDLFY----KYGPIVDIDLKIPP--RPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 18 ~t~~~l~~~F~----~~G~v~~v~~~~~~--~~~g~~fV~f~~~~~a~~A~~~l~ 66 (277)
.+.-+|..+|- .+|-|..+.|...+ ......++.|.+.++|..|+..+.
T Consensus 201 ~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 201 SPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 33456777775 67899998885533 334677889999999999987653
No 315
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=28.38 E-value=30 Score=30.21 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.9
Q ss_pred CeEEEcCCCCCCC--------HHHHHHHhhc--cCCeeEEEeec---CCCCCcEEEEEEcChHHHHHHHH
Q 023767 7 RTLYVGNLPGDTR--------MREVEDLFYK--YGPIVDIDLKI---PPRPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 7 ~~l~V~nl~~~~t--------~~~l~~~F~~--~G~v~~v~~~~---~~~~~g~~fV~f~~~~~a~~A~~ 63 (277)
+.+|+.++..... .+++...|.. .+++..+.+.. ...+.|..|++|...+.|+++..
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3456666655544 4489999998 56777777733 45678889999999999999874
No 316
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.27 E-value=93 Score=29.50 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHhhccCCeeE-----EEeecCCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 16 GDTRMREVEDLFYKYGPIVD-----IDLKIPPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 16 ~~~t~~~l~~~F~~~G~v~~-----v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
..++..+|..++..-+.|.. |.|. ..|.||+.. .+.|...+..|++..+.|+.|.|+.+.
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcC-hhhHHHHHHHhccccccCCceEEEECC
Confidence 45888999988876654443 4444 568999986 556888888899999999999999875
No 317
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.70 E-value=1.7e+02 Score=22.33 Aligned_cols=47 Identities=11% Similarity=0.064 Sum_probs=38.4
Q ss_pred CCCCCCCHHHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023767 13 NLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 13 nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~ 66 (277)
+|+..+.++-|.++-+.+|-|... .+ ..-.+.|.+.+...+|++.|-
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef---ee----~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF---EE----DDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe---cC----CcEEEEeccHHHHHHHHHHHH
Confidence 678889999999999999988876 21 234788999999999998663
No 318
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=27.61 E-value=2.2e+02 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=26.1
Q ss_pred CcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 45 PGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 45 ~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
.|-|. .|.++++|..|+. ++..-.|..|.|.+.-++
T Consensus 383 ~G~A~-VF~see~a~~ai~--~g~i~~gdVvViRyeGPk 418 (535)
T TIGR00110 383 EGPAK-VFESEEEALEAIL--GGKIKEGDVVVIRYEGPK 418 (535)
T ss_pred EEeEE-EECCHHHHHHHHh--cCCCCCCeEEEEeCCCCC
Confidence 45554 4999999999997 466667777777775543
No 319
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=27.54 E-value=70 Score=26.13 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=20.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYG 31 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G 31 (277)
.+.|+|||++++...|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999997444
No 320
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.28 E-value=1.5e+02 Score=17.92 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=28.5
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhcC
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGRD 66 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l~ 66 (277)
.-.+|-.+|+.++ .|..+..........+..|.+.+......+++.|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 13 VLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEeccccHHHHHHHHh
Confidence 4567888888876 77777765432223445566665544445555444
No 321
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=27.26 E-value=3.5e+02 Score=22.92 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=33.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCCCCCcEEEEEEcChHHH
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPPRPPGYAFLEFEDYRDA 58 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~~~~~g~~fV~f~~~~~a 58 (277)
...++|-+.|++..+..|-..+...| .|.+.. .+.|.-||.|..+++-
T Consensus 198 g~~~l~~~~~fd~aW~rl~~aL~~~gf~V~d~d-----rs~G~~~v~y~~~~~~ 246 (303)
T PF06804_consen 198 GQPALILRAPFDRAWRRLGLALDRLGFTVEDRD-----RSQGVYYVRYKPPDSE 246 (303)
T ss_dssp S-EEEEEES-HHHHHHHHHHHHHHTTEEEEEEE-----TTTTEEEEEE----HH
T ss_pred CceEEEECCcHHHHHHHHHHHHHhCCCEEEecc-----cccEEEEEEEcCCChh
Confidence 34577778899999999999999998 666543 4589999999887654
No 322
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=27.00 E-value=4.8e+02 Score=23.82 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHhhccCCeeEEEeec-CCCCCcEEEEEEcChHHHHHHHHhcCCcccCCceEEEEEccCC
Q 023767 15 PGDTRMREVEDLFYKYGPIVDIDLKI-PPRPPGYAFLEFEDYRDAEDAIRGRDGYNFDGYRLRVELAHGG 83 (277)
Q Consensus 15 ~~~~t~~~l~~~F~~~G~v~~v~~~~-~~~~~g~~fV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 83 (277)
+...++.+|.++|.+-+.-.++++.. +..+.|+-+|.|. +..||..+.|..|.|...+..
T Consensus 48 ~~a~~~Kei~~~l~~~n~~~nlk~~~~~td~~G~t~vr~~---------q~vnGvpv~g~~v~vh~dk~g 108 (507)
T COG3227 48 KSAPNEKEILQFLENVNADNNLKAISTDTDPNGFTHVRYQ---------QVVNGVPVKGSEVIVHLDKNG 108 (507)
T ss_pred cccCChHHHHHHHhcCChhhceeeEEeeccCCCceEEEEE---------eeECCeeccCceEEEEECCCC
Confidence 34578888988888655555566543 3455888899886 348999999999999987643
No 323
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.84 E-value=20 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=18.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhh
Q 023767 4 RSSRTLYVGNLPGDTRMREVEDLFY 28 (277)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~l~~~F~ 28 (277)
..+++||||+||..+-.++=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 4578999999998876665444443
No 324
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=26.70 E-value=74 Score=26.86 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCe
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPI 33 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v 33 (277)
.+.|+|||+.++...|..+++....+
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~ 128 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLF 128 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCC
Confidence 47899999999999999998653333
No 325
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=25.53 E-value=2.9e+02 Score=20.64 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=27.7
Q ss_pred HHHHHHHhcCC-eeEEEEEecCCCcEEEEEEechhHHHHHHHhcCC
Q 023767 125 DLKDHMRRAGD-VCFSQVFRDRGGMTGIVDYTSYDDMKYAIRKLDR 169 (277)
Q Consensus 125 ~l~~~f~~~g~-v~~~~~~~~~~~~~~fV~f~~~~~a~~a~~~l~g 169 (277)
.|.......+. |..+.++.. -.||.||++...+++..++..+.+
T Consensus 24 ~L~~~~~~~~~~i~~i~vp~~-fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 24 MLAMRAKKENLPIYAILAPPE-LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHhCCCcEEEEEccCC-CCcEEEEEEEChHHHHHHHhcCCC
Confidence 34444433332 444444333 457999999988888899887765
No 326
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=25.52 E-value=38 Score=32.59 Aligned_cols=26 Identities=8% Similarity=0.000 Sum_probs=13.0
Q ss_pred CceEEEeCCCCC------CCHHHHHHHHHhcC
Q 023767 109 DYRVLVTGLPSS------ASWQDLKDHMRRAG 134 (277)
Q Consensus 109 ~~~l~v~~l~~~------~~~~~l~~~f~~~g 134 (277)
....|++++... +.++.+.++..--|
T Consensus 145 ~qR~f~gvvtk~~DtygfVD~dvffQls~~~g 176 (1194)
T KOG4246|consen 145 PQRRFAGVVTKQTDTYGFVDQDVFFQLSKMQG 176 (1194)
T ss_pred cceeeehhhhhhccccccccHHHHHHHHHHhc
Confidence 456777765432 33444554444333
No 327
>PF14893 PNMA: PNMA
Probab=25.44 E-value=53 Score=28.23 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=31.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHHHh----cCCeeEEE--EEecCCCcEEEEEEech
Q 023767 108 SDYRVLVTGLPSSASWQDLKDHMRR----AGDVCFSQ--VFRDRGGMTGIVDYTSY 157 (277)
Q Consensus 108 ~~~~l~v~~l~~~~~~~~l~~~f~~----~g~v~~~~--~~~~~~~~~~fV~f~~~ 157 (277)
....|.|.++|.++++.+|++.+.. .|...-+. +....+..-|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 3567899999999999999988774 34322221 11222233577777543
No 328
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=25.34 E-value=1.6e+02 Score=17.67 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=30.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecC-CCCCcEEEEEEcCh-HHHHHHHHhcC
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIP-PRPPGYAFLEFEDY-RDAEDAIRGRD 66 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~-~~~~g~~fV~f~~~-~~a~~A~~~l~ 66 (277)
+|.|.--...-...+|..+|..+| .|..+..... +......++.+... ++...+++.|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 344433333334668888898886 7777776432 22222233334322 45555555554
No 329
>PHA01632 hypothetical protein
Probab=25.16 E-value=84 Score=18.98 Aligned_cols=21 Identities=14% Similarity=0.369 Sum_probs=17.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q 023767 9 LYVGNLPGDTRMREVEDLFYK 29 (277)
Q Consensus 9 l~V~nl~~~~t~~~l~~~F~~ 29 (277)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 556788999999999887654
No 330
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=25.07 E-value=60 Score=20.25 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=10.8
Q ss_pred CHHHHHHHhhccCCeeEE
Q 023767 19 RMREVEDLFYKYGPIVDI 36 (277)
Q Consensus 19 t~~~l~~~F~~~G~v~~v 36 (277)
|--|+++++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456889999999976553
No 331
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=24.48 E-value=1.8e+02 Score=18.29 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=22.2
Q ss_pred cCCCCCCCHHHHHHHhhc--cCCeeEEEeecCCCCCcEE-EEEEcC
Q 023767 12 GNLPGDTRMREVEDLFYK--YGPIVDIDLKIPPRPPGYA-FLEFED 54 (277)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~--~G~v~~v~~~~~~~~~g~~-fV~f~~ 54 (277)
.-+--.+.. +|.+.+.. .|.|...+|.. ..|.+ +|+|.+
T Consensus 10 ~~irDRi~~-~l~~~l~~~~~g~I~~fKmtD---G~giG~vv~~~n 51 (64)
T PF11061_consen 10 SRIRDRIPK-ELVDKLGKNPIGTIKGFKMTD---GSGIGVVVEFSN 51 (64)
T ss_pred hhhhhhccH-HHHHHhccCCcEEEEEEEEec---CCcEEEEEEecC
Confidence 333333443 44455555 78899988862 25655 467764
No 332
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=24.46 E-value=2.5e+02 Score=20.08 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=18.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEe
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDL 38 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~ 38 (277)
.||||++|.....+.|++. .+..|.++.-
T Consensus 7 ~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~ 35 (138)
T smart00195 7 HLYLGSYSSALNLALLKKL--GITHVINVTN 35 (138)
T ss_pred CeEECChhHcCCHHHHHHc--CCCEEEEccC
Confidence 5999999877655444432 3445555543
No 333
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.43 E-value=2e+02 Score=20.53 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhhc-cCCeeEEEeec-------CCCCCcEEEEEEcChHHHHH
Q 023767 16 GDTRMREVEDLFYK-YGPIVDIDLKI-------PPRPPGYAFLEFEDYRDAED 60 (277)
Q Consensus 16 ~~~t~~~l~~~F~~-~G~v~~v~~~~-------~~~~~g~~fV~f~~~~~a~~ 60 (277)
+.++.+||++-+.. |-.-.++.+.. .+.+.|||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 36788899876664 44323322211 3566778877 666666554
No 334
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.34 E-value=1.1e+02 Score=18.13 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhccCC
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKYGP 32 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~G~ 32 (277)
..++|.+.....+.++|.+++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35778887778899999999999875
No 335
>COG5584 Predicted small secreted protein [Function unknown]
Probab=24.30 E-value=75 Score=21.71 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=21.8
Q ss_pred cCCCCCCCHHHHHHHhhccCCeeEEEee
Q 023767 12 GNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (277)
Q Consensus 12 ~nl~~~~t~~~l~~~F~~~G~v~~v~~~ 39 (277)
.||.......-+++.|.++|+|+.-++.
T Consensus 28 ~~is~e~alk~vk~afk~~mnI~GSwI~ 55 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMNIKGSWIV 55 (103)
T ss_pred cccChhHHHHHHHHHhcccCCcceeEEE
Confidence 3567777777888999999998887664
No 336
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=23.38 E-value=2.1e+02 Score=18.29 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=30.9
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCCC-CCc-EEEEEEcC---hHHHHHHHHhcCC
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPPR-PPG-YAFLEFED---YRDAEDAIRGRDG 67 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~~-~~g-~~fV~f~~---~~~a~~A~~~l~~ 67 (277)
...+|.++|.++| .|..+....... ... ..||++.. .+....+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 4677888999886 777776644322 222 34567763 5666677776654
No 337
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.14 E-value=2.4e+02 Score=24.03 Aligned_cols=58 Identities=3% Similarity=0.031 Sum_probs=34.7
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCeeEEEeecCCCCC----cEEEEEEcChHHHHHHHHhcCCc
Q 023767 10 YVGNLPGDTRMREVEDLFYKYGPIVDIDLKIPPRPP----GYAFLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 10 ~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~~~~----g~~fV~f~~~~~a~~A~~~l~~~ 68 (277)
+.+-+.++....-=.+.++.|+.|..........+. =||.|+|.+..++-..+. ||+.
T Consensus 66 mftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq~l~-ln~~ 127 (331)
T KOG2603|consen 66 MFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQQLN-LNNV 127 (331)
T ss_pred EccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHHHhc-ccCC
Confidence 334444444444444555667666665553322222 488999999888888887 6654
No 338
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.71 E-value=36 Score=20.69 Aligned_cols=37 Identities=27% Similarity=0.426 Sum_probs=18.9
Q ss_pred CCcEEEEEEcC-hHHHHHHHHhcCCcccCCceEEEEEcc
Q 023767 44 PPGYAFLEFED-YRDAEDAIRGRDGYNFDGYRLRVELAH 81 (277)
Q Consensus 44 ~~g~~fV~f~~-~~~a~~A~~~l~~~~~~g~~l~v~~a~ 81 (277)
.+|||||...+ .++.--.-..|++. ++|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A-~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGA-MDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCC-CCCCEEEEEEec
Confidence 48999999987 33333333445443 344455555544
No 339
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=22.60 E-value=2.4e+02 Score=22.93 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=39.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccC-CeeEEEeecCC-----CCCcEEEEEEcChHHHHHHHHhc
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYG-PIVDIDLKIPP-----RPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~~~~~~-----~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
+|-|.-||-.-.++-++.+|++.| .|.--.+..+. ....|..|.....--...|+..|
T Consensus 120 ~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~y~~l~L~g~~rl~daL~HL 183 (245)
T PF12623_consen 120 EVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSRYVDLTLTGTVRLADALNHL 183 (245)
T ss_pred EEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCcceEEEEeeeEEHHHHHhhh
Confidence 577888888889999999999999 44443333222 12457788887766666666533
No 340
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=22.50 E-value=3.7e+02 Score=24.34 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=33.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEeec--CCCCCcEEE-EEEcChHHHHHHH
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKI--PPRPPGYAF-LEFEDYRDAEDAI 62 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v~~~~--~~~~~g~~f-V~f~~~~~a~~A~ 62 (277)
++|.|+.||+.++.+.+.+..... +.|..+.-.. +....+..| |++.....++..+
T Consensus 233 ~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~ 294 (445)
T smart00434 233 NTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVL 294 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCCCceEEEEEECCCcCHHHHH
Confidence 689999999999999988765542 3443332221 112255666 4555544444443
No 341
>PRK15464 cold shock-like protein CspH; Provisional
Probab=22.40 E-value=61 Score=20.74 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=8.2
Q ss_pred CCcEEEEEEcC
Q 023767 44 PPGYAFLEFED 54 (277)
Q Consensus 44 ~~g~~fV~f~~ 54 (277)
.+||+||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 38999997654
No 342
>PF14191 YodL: YodL-like
Probab=22.35 E-value=2.6e+02 Score=19.47 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=18.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYK 29 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~ 29 (277)
..||.+.|....+.++|...|..
T Consensus 39 ~~VY~~~l~~~~~Le~iy~~FN~ 61 (103)
T PF14191_consen 39 RLVYDGELDHTETLEDIYERFNV 61 (103)
T ss_pred eEEEEEecCCCCCHHHHHHHhCc
Confidence 45899999988888888888865
No 343
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=22.31 E-value=5e+02 Score=23.47 Aligned_cols=52 Identities=17% Similarity=0.278 Sum_probs=32.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhcc---CCeeEEEeecCCCCCcEEE-EEEcChHHHHH
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKY---GPIVDIDLKIPPRPPGYAF-LEFEDYRDAED 60 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~---G~v~~v~~~~~~~~~g~~f-V~f~~~~~a~~ 60 (277)
.++|.|+-||..++.+.+.+..... |.|..+.= . ...+..| |++.....+..
T Consensus 227 ~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~d-s--~~~~v~i~I~lk~~~~~~~ 282 (439)
T PHA02592 227 KTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDD-C--TEDGFRFKVTLKREENEEA 282 (439)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCccc-C--CCCceEEEEEECCCCCHHH
Confidence 4579999999999988887766533 45555432 2 2245666 45555444443
No 344
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=22.29 E-value=1.3e+02 Score=22.70 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=18.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYK 29 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~ 29 (277)
..+.|+|+|++++.+.|..++..
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhc
Confidence 35778999999988888888764
No 345
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=21.87 E-value=1.9e+02 Score=18.80 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.0
Q ss_pred CcEEEEEEcChHHHHHHHHhcCC
Q 023767 45 PGYAFLEFEDYRDAEDAIRGRDG 67 (277)
Q Consensus 45 ~g~~fV~f~~~~~a~~A~~~l~~ 67 (277)
.+..+|.|+..++-+.|.. |.|
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g 75 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRG 75 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT
T ss_pred CCEEEEEEcCCCCHHHHHh-hCC
Confidence 6789999999999999987 554
No 346
>PF15585 Imm46: Immunity protein 46
Probab=21.80 E-value=3.3e+02 Score=19.89 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=32.2
Q ss_pred CceEEEeCCCCCCC--HHHHHHHHHhcCCeeEEEEEecCCCcEEEEEEechhHH
Q 023767 109 DYRVLVTGLPSSAS--WQDLKDHMRRAGDVCFSQVFRDRGGMTGIVDYTSYDDM 160 (277)
Q Consensus 109 ~~~l~v~~l~~~~~--~~~l~~~f~~~g~v~~~~~~~~~~~~~~fV~f~~~~~a 160 (277)
...|++.+++..-+ .++|.++|+..|++. ++.||.+...+.++.
T Consensus 51 ~~~l~~~g~~NHr~~~~~eii~lf~~i~e~a--------PGSYGlLy~rDDEd~ 96 (129)
T PF15585_consen 51 SYFLHFGGLSNHRGQEAPEIIELFERIAEIA--------PGSYGLLYIRDDEDP 96 (129)
T ss_pred cEEEEEccccCCCccchHHHHHHHHHHHHhC--------CCceeEEEEecCCCC
Confidence 56889999988765 678999999888762 334777776666643
No 347
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.80 E-value=2.2e+02 Score=18.01 Aligned_cols=50 Identities=18% Similarity=0.285 Sum_probs=30.4
Q ss_pred CCHHHHHHHhhccC-CeeEEEeecC-CCCCc-EEEEEEc-ChHHHHHHHHhcCC
Q 023767 18 TRMREVEDLFYKYG-PIVDIDLKIP-PRPPG-YAFLEFE-DYRDAEDAIRGRDG 67 (277)
Q Consensus 18 ~t~~~l~~~F~~~G-~v~~v~~~~~-~~~~g-~~fV~f~-~~~~a~~A~~~l~~ 67 (277)
-...++.+.|+.+| .+..|.-... +.... +-||++. ..+...+|++.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34677888888887 6666555332 22223 4568887 45556667776654
No 348
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.66 E-value=72 Score=20.64 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=7.1
Q ss_pred CcEEEEEEc
Q 023767 45 PGYAFLEFE 53 (277)
Q Consensus 45 ~g~~fV~f~ 53 (277)
+||+||+=.
T Consensus 13 KGfGFI~~~ 21 (74)
T PRK09937 13 KGFGFICPE 21 (74)
T ss_pred CCeEEEeeC
Confidence 899999654
No 349
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=21.46 E-value=71 Score=20.15 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=19.8
Q ss_pred CcEEEEEEcC-hHHHHHHHHhc--CC--cccCCceEEEEEccCC
Q 023767 45 PGYAFLEFED-YRDAEDAIRGR--DG--YNFDGYRLRVELAHGG 83 (277)
Q Consensus 45 ~g~~fV~f~~-~~~a~~A~~~l--~~--~~~~g~~l~v~~a~~~ 83 (277)
+||+||+=.+ .+++-.=+..+ .+ ..-.|..+........
T Consensus 13 kGfGFI~~~~g~~dvfvH~s~~~~~g~~~l~~G~~V~f~~~~~~ 56 (68)
T TIGR02381 13 KGFGFICPEGVDGDIFAHYSTIQMDGYRTLKAGQKVQFEVVQGP 56 (68)
T ss_pred CCeEEEecCCCCccEEEEHHHhhhcCCCCCCCCCEEEEEEEECC
Confidence 8999997765 23322211112 12 2335666666665543
No 350
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=21.44 E-value=1.1e+02 Score=25.30 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK 29 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~ 29 (277)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999998888888864
No 351
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.27 E-value=1.7e+02 Score=16.42 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=22.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCeeEEEee
Q 023767 8 TLYVGNLPGDTRMREVEDLFYKYGPIVDIDLK 39 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~ 39 (277)
.|..-+++.+++.++|.++++.+.+ ..+.+.
T Consensus 8 ~v~~~~fSgHad~~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 8 RVEQIDFSGHADREELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp EEEESGCSSS-BHHHHHHHHHHHCS-SEEEEE
T ss_pred EEEEEeecCCCCHHHHHHHHHhcCC-CEEEEe
Confidence 4555558999999999999999865 655553
No 352
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.03 E-value=2e+02 Score=17.09 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=24.8
Q ss_pred HHHHHHHhhccC-CeeEEEeecCC-CCCcEEEEEEcChHHHHHHHH
Q 023767 20 MREVEDLFYKYG-PIVDIDLKIPP-RPPGYAFLEFEDYRDAEDAIR 63 (277)
Q Consensus 20 ~~~l~~~F~~~G-~v~~v~~~~~~-~~~g~~fV~f~~~~~a~~A~~ 63 (277)
-.+|-++|..+| .|..+...... .......+...+.+.+..+++
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 456777788776 77766653322 123334455556565555555
No 353
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=20.97 E-value=1.2e+02 Score=27.17 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=31.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhhcc---CCee--EEEeecCCCCCcEEE-EEEcChHHHHHHHHhc
Q 023767 7 RTLYVGNLPGDTRMREVEDLFYKY---GPIV--DIDLKIPPRPPGYAF-LEFEDYRDAEDAIRGR 65 (277)
Q Consensus 7 ~~l~V~nl~~~~t~~~l~~~F~~~---G~v~--~v~~~~~~~~~g~~f-V~f~~~~~a~~A~~~l 65 (277)
++|.|+-||+.++.+++.+..... |.|. ++.=. +. .+..| |++....+++..+..|
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~I~d~~D~-Sd--~~v~ivI~lk~~~~~~~~~~~L 278 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIKISDYRDE-SD--RGVRIVIELKRGADPEKILEGL 278 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSSTEEEEEE--BB--TBS-EEEEESTTSHHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcchhhHHHhc-CC--CceeEEEEecCCccHHHHHHHH
Confidence 689999999999988887766543 5555 43333 33 36666 5566554555555433
No 354
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.94 E-value=2.7e+02 Score=18.69 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=28.3
Q ss_pred CHHHHHHHhhccC-CeeEEEeecCC-CCCc-EEEEEEcC--hHHHHHHHHhcC
Q 023767 19 RMREVEDLFYKYG-PIVDIDLKIPP-RPPG-YAFLEFED--YRDAEDAIRGRD 66 (277)
Q Consensus 19 t~~~l~~~F~~~G-~v~~v~~~~~~-~~~g-~~fV~f~~--~~~a~~A~~~l~ 66 (277)
...++.+.|+.+| .+..|.-.... .... +-||++.- .+....|++.|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 4666778888887 66666553332 2223 45688874 344456666553
No 355
>PRK14998 cold shock-like protein CspD; Provisional
Probab=20.88 E-value=77 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=7.6
Q ss_pred CcEEEEEEcC
Q 023767 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~~fV~f~~ 54 (277)
+||+||.=.+
T Consensus 13 kGfGFI~~~~ 22 (73)
T PRK14998 13 KGFGFICPEG 22 (73)
T ss_pred CceEEEecCC
Confidence 8999996543
No 356
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=20.43 E-value=1.8e+02 Score=23.24 Aligned_cols=45 Identities=18% Similarity=0.300 Sum_probs=24.4
Q ss_pred EEcCCCCCCCHHHH--------HHHhhccCCeeEEEeecCCCCCcEEEEEEcC
Q 023767 10 YVGNLPGDTRMREV--------EDLFYKYGPIVDIDLKIPPRPPGYAFLEFED 54 (277)
Q Consensus 10 ~V~nl~~~~t~~~l--------~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~ 54 (277)
+|-.||..++.++- .++|..+|-+.++-|+.++.....|-|-|.+
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~ 123 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTT 123 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeec
Confidence 66779999888773 3345566778888776543344566666653
No 357
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=20.38 E-value=3.2e+02 Score=20.74 Aligned_cols=33 Identities=6% Similarity=0.150 Sum_probs=26.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CeeEEEeec
Q 023767 8 TLYVGNLPGDTRMREVEDLFYK-YG-PIVDIDLKI 40 (277)
Q Consensus 8 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~~~~ 40 (277)
..|+-.+++.++-.+|.+.|+. || .|..|+...
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 4677788999999999999997 66 777877743
No 358
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.36 E-value=28 Score=22.02 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=24.9
Q ss_pred HHHHHHhhccCCeeEEEeecCCCCCcEEEEEEcChHHHHHHHHhc
Q 023767 21 REVEDLFYKYGPIVDIDLKIPPRPPGYAFLEFEDYRDAEDAIRGR 65 (277)
Q Consensus 21 ~~l~~~F~~~G~v~~v~~~~~~~~~g~~fV~f~~~~~a~~A~~~l 65 (277)
++|++.|..++....+. +-.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHh
Confidence 57777776654333221 225799999999988877654
No 359
>PRK11901 hypothetical protein; Reviewed
Probab=20.18 E-value=4.7e+02 Score=22.47 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhhccCCeeEEEeec---CCCCCcEE--EEEEcChHHHHHHHHhcCCc
Q 023767 6 SRTLYVGNLPGDTRMREVEDLFYKYGPIVDIDLKI---PPRPPGYA--FLEFEDYRDAEDAIRGRDGY 68 (277)
Q Consensus 6 s~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~---~~~~~g~~--fV~f~~~~~a~~A~~~l~~~ 68 (277)
..+|.|..+ -.++.|..|..+++ +..+++.. .++ ..|. |-.|.+.++|..|+..|...
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 345666554 45788888888775 34455533 222 2343 34689999999999988753
No 360
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.15 E-value=74 Score=20.19 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=7.7
Q ss_pred CcEEEEEEcC
Q 023767 45 PGYAFLEFED 54 (277)
Q Consensus 45 ~g~~fV~f~~ 54 (277)
+||+||+=.+
T Consensus 15 kGyGFI~~~~ 24 (69)
T PRK09507 15 KGFGFITPED 24 (69)
T ss_pred CCcEEEecCC
Confidence 8999997644
Done!