BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023768
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QNU|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
           Atlastin-1 In Complex With Gdp, Hexagonal Form
 pdb|3QOF|A Chain A, Crystal Structure Of The Cytosolic Domain Of Human
           Atlastin-1 In Complex With Gdp, Orthorhombic Form
 pdb|3QOF|B Chain B, Crystal Structure Of The Cytosolic Domain Of Human
           Atlastin-1 In Complex With Gdp, Orthorhombic Form
 pdb|3QOF|C Chain C, Crystal Structure Of The Cytosolic Domain Of Human
           Atlastin-1 In Complex With Gdp, Orthorhombic Form
 pdb|3QOF|D Chain D, Crystal Structure Of The Cytosolic Domain Of Human
           Atlastin-1 In Complex With Gdp, Orthorhombic Form
          Length = 459

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207
           Q  +E V + RG  K+ G+EF   R  +Q LES++ E+
Sbjct: 405 QLKEESVKLFRGVKKMGGEEFS--RRYLQQLESEIDEL 440


>pdb|3Q5E|A Chain A, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
           Bound To Gdp, Crystal Form 2
 pdb|3Q5E|C Chain C, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
           Bound To Gdp, Crystal Form 2
 pdb|3Q5E|E Chain E, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
           Bound To Gdp, Crystal Form 2
 pdb|3Q5E|G Chain G, Crystal Structure Of Human Atlastin-1 (Residues 1-447)
           Bound To Gdp, Crystal Form 2
          Length = 447

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207
           Q  +E V + RG  K+ G+EF   R  +Q LES++ E+
Sbjct: 393 QLKEESVKLFRGVKKMGGEEFS--RRYLQQLESEIDEL 428


>pdb|4IDQ|A Chain A, Human Atlastin-1 1-446, N440t, Gdpalf4-
 pdb|4IDQ|B Chain B, Human Atlastin-1 1-446, N440t, Gdpalf4-
 pdb|4IDQ|C Chain C, Human Atlastin-1 1-446, N440t, Gdpalf4-
 pdb|4IDQ|D Chain D, Human Atlastin-1 1-446, N440t, Gdpalf4-
          Length = 447

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207
           Q  +E V + RG  K+ G+EF   R  +Q LES++ E+
Sbjct: 394 QLKEESVKLFRGVKKMGGEEFS--RRYLQQLESEIDEL 429


>pdb|4IDN|A Chain A, Human Atlastin-1 1-446, C-his6, Gppnhp
 pdb|4IDN|B Chain B, Human Atlastin-1 1-446, C-his6, Gppnhp
 pdb|4IDO|A Chain A, Human Atlastin-1 1-446, C-his6, Gdpalf4-
 pdb|4IDO|B Chain B, Human Atlastin-1 1-446, C-his6, Gdpalf4-
          Length = 457

 Score = 27.7 bits (60), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207
           Q  +E V + RG  K+ G+EF   R  +Q LES++ E+
Sbjct: 393 QLKEESVKLFRGVKKMGGEEFS--RRYLQQLESEIDEL 428


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,388,328
Number of Sequences: 62578
Number of extensions: 211285
Number of successful extensions: 663
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 662
Number of HSP's gapped (non-prelim): 11
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)