Query 023768
Match_columns 277
No_of_seqs 69 out of 71
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 06:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 2.8E-56 6.1E-61 372.2 14.1 115 97-211 12-126 (126)
2 PF07889 DUF1664: Protein of u 97.9 3.9E-05 8.4E-10 64.9 7.2 94 107-204 33-126 (126)
3 PF10805 DUF2730: Protein of u 97.2 0.0011 2.3E-08 54.1 6.7 87 94-206 9-97 (106)
4 PF04375 HemX: HemX; InterPro 95.9 0.042 9.2E-07 53.3 9.2 11 100-110 40-50 (372)
5 PRK10884 SH3 domain-containing 95.2 0.63 1.4E-05 42.3 13.4 98 104-209 66-167 (206)
6 PRK15048 methyl-accepting chem 95.1 0.8 1.7E-05 45.6 15.0 30 237-266 520-549 (553)
7 PF01519 DUF16: Protein of unk 94.4 0.38 8.3E-06 39.7 8.9 82 119-209 21-102 (102)
8 PRK14011 prefoldin subunit alp 94.2 0.32 6.9E-06 42.0 8.4 53 99-182 72-124 (144)
9 PF07798 DUF1640: Protein of u 93.9 2.8 6.1E-05 36.7 14.0 83 120-205 43-137 (177)
10 TIGR00293 prefoldin, archaeal 93.1 0.49 1.1E-05 38.6 7.5 54 99-183 70-123 (126)
11 PF11932 DUF3450: Protein of u 92.9 2.6 5.7E-05 38.5 12.8 93 134-226 23-119 (251)
12 PF10146 zf-C4H2: Zinc finger- 92.8 4.7 0.0001 37.4 14.2 64 162-225 34-97 (230)
13 PF04582 Reo_sigmaC: Reovirus 92.8 0.15 3.3E-06 49.4 4.7 87 125-211 67-156 (326)
14 PHA02562 46 endonuclease subun 92.6 1.5 3.3E-05 43.5 11.6 84 134-217 194-277 (562)
15 PRK11637 AmiB activator; Provi 92.4 1.9 4.2E-05 42.3 11.8 80 126-205 45-127 (428)
16 PF00038 Filament: Intermediat 92.2 6.4 0.00014 36.5 14.5 90 126-215 167-257 (312)
17 PRK11637 AmiB activator; Provi 92.0 1.8 3.9E-05 42.4 11.1 77 131-207 43-122 (428)
18 PF13747 DUF4164: Domain of un 91.9 2.4 5.1E-05 33.8 9.7 81 141-225 3-83 (89)
19 PF10805 DUF2730: Protein of u 91.3 1.4 3.1E-05 35.8 8.0 65 152-223 34-100 (106)
20 PF12718 Tropomyosin_1: Tropom 91.0 4.4 9.6E-05 34.7 11.2 62 150-211 77-138 (143)
21 PF00015 MCPsignal: Methyl-acc 90.6 9.7 0.00021 32.4 13.0 15 61-75 45-59 (213)
22 cd00584 Prefoldin_alpha Prefol 89.7 2 4.4E-05 35.1 7.7 55 99-184 71-125 (129)
23 COG3883 Uncharacterized protei 89.7 4.5 9.9E-05 38.4 11.0 68 138-205 37-104 (265)
24 PRK03947 prefoldin subunit alp 89.6 2.2 4.8E-05 35.5 8.0 52 99-181 78-129 (140)
25 PF10158 LOH1CR12: Tumour supp 89.3 9.6 0.00021 32.5 11.7 51 124-174 27-77 (131)
26 PF05597 Phasin: Poly(hydroxya 88.8 3.7 8E-05 35.1 8.9 59 142-210 72-131 (132)
27 PF06103 DUF948: Bacterial pro 88.7 6.1 0.00013 30.6 9.4 31 134-164 25-55 (90)
28 PRK10920 putative uroporphyrin 88.7 2 4.4E-05 42.7 8.2 62 90-159 35-98 (390)
29 PF06103 DUF948: Bacterial pro 88.6 4.6 9.9E-05 31.3 8.6 45 120-164 18-62 (90)
30 PF14712 Snapin_Pallidin: Snap 88.6 9 0.0002 29.6 10.3 73 135-208 14-91 (92)
31 PF02996 Prefoldin: Prefoldin 88.4 1.3 2.9E-05 35.4 5.7 53 99-182 61-113 (120)
32 KOG2629 Peroxisomal membrane a 88.4 1.2 2.6E-05 42.9 6.2 32 93-125 85-118 (300)
33 PRK11166 chemotaxis regulator 87.7 9.7 0.00021 35.1 11.4 108 124-231 26-162 (214)
34 PF04380 BMFP: Membrane fusoge 87.0 2.3 5E-05 33.0 6.1 78 119-209 1-78 (79)
35 PF10498 IFT57: Intra-flagella 86.9 9.7 0.00021 37.4 11.7 78 117-194 223-300 (359)
36 PF10241 KxDL: Uncharacterized 86.5 10 0.00023 29.8 9.6 62 138-206 21-82 (88)
37 PF04513 Baculo_PEP_C: Baculov 86.2 13 0.00029 32.3 10.9 81 125-205 35-116 (140)
38 PHA02562 46 endonuclease subun 86.2 13 0.00028 37.0 12.3 33 173-205 350-382 (562)
39 PRK06975 bifunctional uroporph 86.1 4.8 0.0001 42.2 9.6 47 135-181 367-413 (656)
40 smart00806 AIP3 Actin interact 85.6 24 0.00053 35.8 13.8 98 126-223 178-307 (426)
41 PRK10884 SH3 domain-containing 85.4 11 0.00024 34.3 10.5 60 125-184 97-156 (206)
42 PF09177 Syntaxin-6_N: Syntaxi 85.2 3.8 8.3E-05 32.4 6.6 29 122-150 40-68 (97)
43 PF05816 TelA: Toxic anion res 85.1 15 0.00031 35.3 11.7 97 122-218 85-199 (333)
44 KOG0250 DNA repair protein RAD 84.9 15 0.00032 41.1 12.9 109 121-230 278-386 (1074)
45 PRK15048 methyl-accepting chem 84.7 29 0.00064 34.7 14.1 17 249-266 520-536 (553)
46 PRK09039 hypothetical protein; 84.7 31 0.00067 33.5 13.8 61 144-204 107-167 (343)
47 PRK04778 septation ring format 84.6 21 0.00045 36.7 13.3 14 61-74 254-267 (569)
48 PF00261 Tropomyosin: Tropomyo 84.5 17 0.00037 33.1 11.4 68 152-219 91-158 (237)
49 PF10498 IFT57: Intra-flagella 84.3 6.2 0.00013 38.8 8.9 83 114-200 231-320 (359)
50 PF05531 NPV_P10: Nucleopolyhe 83.2 4.8 0.00011 31.6 6.2 19 187-205 41-59 (75)
51 PF05478 Prominin: Prominin; 82.8 17 0.00037 39.0 12.1 34 129-162 188-222 (806)
52 PF08317 Spc7: Spc7 kinetochor 81.4 45 0.00097 31.9 13.4 104 106-209 139-251 (325)
53 PF10828 DUF2570: Protein of u 81.3 4.1 9E-05 33.2 5.5 15 99-113 11-25 (110)
54 TIGR01837 PHA_granule_1 poly(h 80.8 12 0.00026 31.1 8.2 44 166-209 73-117 (118)
55 PRK10803 tol-pal system protei 80.8 5.6 0.00012 37.1 6.9 54 152-205 39-92 (263)
56 PF10046 BLOC1_2: Biogenesis o 80.7 16 0.00034 29.3 8.5 22 189-210 74-95 (99)
57 PF08700 Vps51: Vps51/Vps67; 80.3 16 0.00035 27.5 8.2 64 143-209 23-86 (87)
58 PRK04778 septation ring format 80.3 19 0.00042 36.9 11.1 119 104-222 238-410 (569)
59 PF09403 FadA: Adhesion protei 80.3 36 0.00078 29.0 13.0 103 98-213 10-115 (126)
60 KOG0972 Huntingtin interacting 80.2 15 0.00033 36.0 9.7 100 111-210 223-327 (384)
61 PF10168 Nup88: Nuclear pore c 79.8 35 0.00076 36.6 13.1 67 147-213 587-664 (717)
62 PRK04406 hypothetical protein; 79.6 9.7 0.00021 29.5 6.8 37 147-183 5-41 (75)
63 PF11932 DUF3450: Protein of u 79.6 37 0.00081 31.0 11.8 71 132-202 35-105 (251)
64 PF06120 Phage_HK97_TLTM: Tail 79.5 26 0.00055 34.0 11.0 111 91-216 23-152 (301)
65 PF04582 Reo_sigmaC: Reovirus 79.4 1.2 2.5E-05 43.5 1.9 57 175-231 99-155 (326)
66 COG4942 Membrane-bound metallo 79.4 41 0.00088 34.1 12.7 80 135-219 38-117 (420)
67 PF10046 BLOC1_2: Biogenesis o 79.2 31 0.00067 27.6 10.8 11 218-228 82-92 (99)
68 PF03915 AIP3: Actin interacti 79.2 17 0.00036 36.8 10.0 88 141-228 201-308 (424)
69 PF04129 Vps52: Vps52 / Sac2 f 78.8 26 0.00057 35.6 11.5 83 153-235 14-99 (508)
70 PF04156 IncA: IncA protein; 78.7 43 0.00092 28.9 13.2 8 219-226 175-182 (191)
71 TIGR00996 Mtu_fam_mce virulenc 78.3 45 0.00099 30.6 12.0 10 188-197 213-222 (291)
72 TIGR02132 phaR_Bmeg polyhydrox 78.0 11 0.00023 34.3 7.4 21 145-165 78-98 (189)
73 PF04799 Fzo_mitofusin: fzo-li 77.8 12 0.00026 33.5 7.7 63 139-208 102-164 (171)
74 PF04740 LXG: LXG domain of WX 77.6 47 0.001 28.8 12.0 25 124-148 64-88 (204)
75 COG1196 Smc Chromosome segrega 77.5 59 0.0013 36.3 14.5 41 178-218 867-907 (1163)
76 PF06419 COG6: Conserved oligo 77.2 26 0.00057 36.5 11.1 89 115-206 6-98 (618)
77 PF09602 PhaP_Bmeg: Polyhydrox 77.1 35 0.00076 30.5 10.3 79 128-206 22-103 (165)
78 PF04102 SlyX: SlyX; InterPro 76.7 7.8 0.00017 29.2 5.4 51 151-208 2-52 (69)
79 PF00804 Syntaxin: Syntaxin; 76.6 30 0.00064 26.1 9.2 34 126-159 5-38 (103)
80 PF06008 Laminin_I: Laminin Do 76.6 32 0.00069 31.6 10.4 17 130-146 26-42 (264)
81 PF05739 SNARE: SNARE domain; 76.2 25 0.00054 24.9 8.0 26 155-180 6-31 (63)
82 PRK13182 racA polar chromosome 76.1 14 0.00031 32.9 7.7 61 147-209 86-146 (175)
83 PF08614 ATG16: Autophagy prot 75.8 13 0.00028 32.9 7.4 96 114-209 71-172 (194)
84 PRK13729 conjugal transfer pil 75.3 19 0.00042 36.9 9.3 51 161-211 70-120 (475)
85 PRK04863 mukB cell division pr 75.0 55 0.0012 38.1 13.6 27 128-154 314-340 (1486)
86 PF03670 UPF0184: Uncharacteri 74.9 12 0.00027 29.9 6.3 46 130-179 28-73 (83)
87 COG4942 Membrane-bound metallo 74.8 49 0.0011 33.6 11.8 89 121-209 157-252 (420)
88 PF04100 Vps53_N: Vps53-like, 74.7 13 0.00029 36.5 7.9 22 202-223 71-92 (383)
89 smart00502 BBC B-Box C-termina 74.7 37 0.00081 26.3 12.8 32 211-242 84-116 (127)
90 PF02403 Seryl_tRNA_N: Seryl-t 74.6 41 0.00088 26.6 9.9 62 147-212 37-98 (108)
91 TIGR00414 serS seryl-tRNA synt 74.4 32 0.00069 34.2 10.4 71 144-218 35-106 (418)
92 PF12718 Tropomyosin_1: Tropom 74.0 56 0.0012 28.0 12.6 87 128-218 17-103 (143)
93 PF13747 DUF4164: Domain of un 74.0 43 0.00093 26.6 10.0 77 135-219 8-84 (89)
94 PF02403 Seryl_tRNA_N: Seryl-t 73.7 17 0.00037 28.8 6.9 68 155-222 31-101 (108)
95 KOG1161 Protein involved in va 73.6 9.5 0.00021 37.1 6.4 70 125-195 45-114 (310)
96 PF05008 V-SNARE: Vesicle tran 73.5 29 0.00064 25.9 7.9 72 127-201 2-74 (79)
97 PF12732 YtxH: YtxH-like prote 73.2 15 0.00033 27.6 6.2 39 101-146 13-51 (74)
98 PF08317 Spc7: Spc7 kinetochor 73.2 88 0.0019 29.9 13.8 44 175-218 210-253 (325)
99 smart00283 MA Methyl-accepting 73.2 61 0.0013 28.0 14.3 15 61-75 96-110 (262)
100 smart00283 MA Methyl-accepting 73.1 61 0.0013 28.0 14.1 30 176-205 55-84 (262)
101 PF10392 COG5: Golgi transport 73.0 54 0.0012 27.3 11.9 50 127-176 25-74 (132)
102 COG1196 Smc Chromosome segrega 72.8 84 0.0018 35.2 14.2 60 161-221 447-506 (1163)
103 PF10168 Nup88: Nuclear pore c 72.8 38 0.00082 36.3 11.1 77 126-206 541-618 (717)
104 cd00890 Prefoldin Prefoldin is 72.7 9.4 0.0002 30.6 5.3 41 144-184 85-125 (129)
105 PF07888 CALCOCO1: Calcium bin 72.6 46 0.001 34.8 11.4 50 115-164 128-182 (546)
106 PF04799 Fzo_mitofusin: fzo-li 72.3 20 0.00043 32.2 7.7 48 140-187 114-164 (171)
107 PF15450 DUF4631: Domain of un 71.9 33 0.00071 35.7 10.0 86 115-200 334-438 (531)
108 PF01442 Apolipoprotein: Apoli 71.8 55 0.0012 26.9 14.0 19 126-144 3-21 (202)
109 PF06160 EzrA: Septation ring 71.7 22 0.00049 36.5 8.9 61 138-198 371-431 (560)
110 COG3883 Uncharacterized protei 71.6 26 0.00055 33.5 8.6 34 155-188 33-66 (265)
111 PRK00846 hypothetical protein; 71.5 24 0.00052 27.8 7.1 53 147-206 7-59 (77)
112 TIGR00833 actII Transport prot 71.4 47 0.001 36.1 11.6 47 183-229 602-648 (910)
113 COG2900 SlyX Uncharacterized p 71.0 18 0.00039 28.3 6.2 35 148-182 3-37 (72)
114 PF14817 HAUS5: HAUS augmin-li 70.8 41 0.0009 35.7 10.8 82 148-229 81-162 (632)
115 PRK09793 methyl-accepting prot 70.3 1.2E+02 0.0027 30.4 14.4 22 134-155 396-417 (533)
116 PF10186 Atg14: UV radiation r 70.0 84 0.0018 28.3 13.2 46 146-191 63-108 (302)
117 PF12325 TMF_TATA_bd: TATA ele 69.8 39 0.00084 28.5 8.5 66 121-187 44-109 (120)
118 PRK02793 phi X174 lysis protei 69.5 19 0.00041 27.6 6.0 32 151-182 6-37 (72)
119 TIGR03185 DNA_S_dndD DNA sulfu 69.1 54 0.0012 34.1 11.1 31 175-205 436-466 (650)
120 KOG0250 DNA repair protein RAD 69.0 1.1E+02 0.0024 34.5 13.8 59 160-218 281-339 (1074)
121 PF05701 WEMBL: Weak chloropla 69.0 97 0.0021 31.7 12.7 83 134-216 241-330 (522)
122 PRK00295 hypothetical protein; 69.0 23 0.0005 26.8 6.4 32 151-182 3-34 (68)
123 PRK02119 hypothetical protein; 68.8 23 0.00051 27.2 6.4 32 151-182 7-38 (73)
124 TIGR00606 rad50 rad50. This fa 68.6 96 0.0021 35.2 13.6 81 119-199 879-959 (1311)
125 PRK02224 chromosome segregatio 68.3 1.4E+02 0.0031 31.7 14.3 6 8-13 25-30 (880)
126 PRK05431 seryl-tRNA synthetase 68.2 27 0.00059 34.8 8.4 67 144-214 33-99 (425)
127 TIGR02132 phaR_Bmeg polyhydrox 68.0 30 0.00066 31.5 7.9 55 151-205 77-131 (189)
128 PF05791 Bacillus_HBL: Bacillu 68.0 43 0.00094 29.5 8.9 33 178-210 139-171 (184)
129 KOG0804 Cytoplasmic Zn-finger 67.9 53 0.0012 33.8 10.4 32 135-166 364-395 (493)
130 TIGR03495 phage_LysB phage lys 67.7 31 0.00067 29.8 7.6 15 98-112 7-21 (135)
131 PF10073 DUF2312: Uncharacteri 67.4 20 0.00044 28.1 5.8 44 149-199 7-50 (74)
132 PF13805 Pil1: Eisosome compon 67.1 1.1E+02 0.0025 29.2 12.0 79 127-209 95-179 (271)
133 cd07651 F-BAR_PombeCdc15_like 66.9 98 0.0021 27.9 13.3 40 116-155 95-134 (236)
134 PF07439 DUF1515: Protein of u 66.9 32 0.00069 29.0 7.2 54 131-184 4-64 (112)
135 COG3750 Uncharacterized protei 66.4 36 0.00077 27.3 7.1 46 147-199 15-60 (85)
136 cd07628 BAR_Atg24p The Bin/Amp 66.1 40 0.00087 29.7 8.3 75 151-225 9-84 (185)
137 KOG4674 Uncharacterized conser 65.8 52 0.0011 38.9 11.0 84 134-217 804-894 (1822)
138 PF02994 Transposase_22: L1 tr 65.8 16 0.00034 35.9 6.1 33 173-205 157-189 (370)
139 PRK04325 hypothetical protein; 65.7 29 0.00063 26.7 6.4 32 151-182 7-38 (74)
140 smart00787 Spc7 Spc7 kinetocho 65.5 1.3E+02 0.0027 29.2 12.1 88 124-211 154-248 (312)
141 TIGR03513 GldL_gliding gliding 65.4 1.1E+02 0.0025 28.1 11.7 91 116-208 102-192 (202)
142 PF10158 LOH1CR12: Tumour supp 65.4 87 0.0019 26.7 10.9 34 147-180 36-69 (131)
143 PF09304 Cortex-I_coil: Cortex 65.4 51 0.0011 27.6 8.2 17 124-140 12-28 (107)
144 TIGR01000 bacteriocin_acc bact 65.0 69 0.0015 31.7 10.6 13 14-26 67-79 (457)
145 PF10883 DUF2681: Protein of u 64.9 4.9 0.00011 32.3 2.1 16 99-114 12-27 (87)
146 TIGR00996 Mtu_fam_mce virulenc 64.9 1.1E+02 0.0025 28.0 11.7 8 61-68 135-142 (291)
147 PRK00736 hypothetical protein; 64.7 29 0.00063 26.3 6.2 31 152-182 4-34 (68)
148 PF06160 EzrA: Septation ring 64.5 1.4E+02 0.003 30.8 12.9 62 170-236 454-515 (560)
149 PRK02224 chromosome segregatio 64.4 1.3E+02 0.0029 32.0 13.1 16 16-31 129-144 (880)
150 COG3074 Uncharacterized protei 64.3 69 0.0015 25.3 8.5 66 155-220 6-71 (79)
151 PF12761 End3: Actin cytoskele 64.2 62 0.0013 29.7 9.2 29 177-205 156-184 (195)
152 PF15450 DUF4631: Domain of un 64.1 75 0.0016 33.2 10.7 43 124-166 336-378 (531)
153 PLN03094 Substrate binding sub 64.1 31 0.00066 34.3 7.8 14 61-74 232-245 (370)
154 PF02520 DUF148: Domain of unk 63.9 30 0.00066 27.8 6.6 62 115-176 34-95 (113)
155 KOG0240 Kinesin (SMY1 subfamil 63.9 1.1E+02 0.0023 32.5 11.9 117 107-223 372-498 (607)
156 PF06295 DUF1043: Protein of u 63.7 37 0.0008 28.5 7.2 36 139-174 29-64 (128)
157 cd07605 I-BAR_IMD Inverse (I)- 63.6 1.2E+02 0.0027 27.9 11.3 44 155-198 96-143 (223)
158 PF11945 WASH_WAHD: WAHD domai 63.6 33 0.00071 33.0 7.7 56 127-182 17-72 (297)
159 PLN02320 seryl-tRNA synthetase 63.4 62 0.0013 33.5 10.1 96 110-213 63-162 (502)
160 PF04906 Tweety: Tweety; Inte 63.4 73 0.0016 31.6 10.4 86 100-187 74-162 (406)
161 PF03908 Sec20: Sec20; InterP 63.2 71 0.0015 25.0 8.6 60 138-201 4-63 (92)
162 COG3165 Uncharacterized protei 63.2 30 0.00065 31.9 7.0 30 181-210 172-201 (204)
163 KOG0161 Myosin class II heavy 63.0 65 0.0014 38.5 11.2 77 131-207 1364-1440(1930)
164 PRK10698 phage shock protein P 63.0 83 0.0018 28.7 10.0 26 189-214 160-185 (222)
165 PF10779 XhlA: Haemolysin XhlA 62.9 33 0.00072 25.8 6.2 15 150-164 3-17 (71)
166 PF05667 DUF812: Protein of un 62.9 90 0.0019 32.9 11.3 103 124-227 397-499 (594)
167 COG1842 PspA Phage shock prote 62.7 1.1E+02 0.0024 28.3 10.7 94 115-213 86-184 (225)
168 cd07621 BAR_SNX5_6 The Bin/Amp 62.7 43 0.00094 30.9 8.1 27 117-143 48-74 (219)
169 PF03915 AIP3: Actin interacti 62.6 1.8E+02 0.0039 29.5 13.8 67 119-185 204-271 (424)
170 cd00179 SynN Syntaxin N-termin 62.2 87 0.0019 25.7 9.4 26 128-153 6-31 (151)
171 PRK09110 flagellar motor prote 62.1 55 0.0012 31.2 8.9 92 94-187 5-105 (283)
172 PF04912 Dynamitin: Dynamitin 62.0 58 0.0013 31.8 9.3 15 61-75 130-144 (388)
173 PF12128 DUF3584: Protein of u 62.0 1.1E+02 0.0023 34.6 12.4 92 129-223 257-349 (1201)
174 PF05791 Bacillus_HBL: Bacillu 62.0 75 0.0016 28.0 9.2 11 148-158 105-115 (184)
175 PF14197 Cep57_CLD_2: Centroso 61.9 69 0.0015 24.4 8.4 64 143-206 2-65 (69)
176 TIGR03185 DNA_S_dndD DNA sulfu 61.6 2.1E+02 0.0045 29.9 13.8 30 176-205 430-459 (650)
177 PF05802 EspB: Enterobacterial 61.3 1.2E+02 0.0027 29.6 11.0 68 146-213 147-214 (317)
178 KOG2196 Nuclear porin [Nuclear 60.9 90 0.002 29.7 9.9 73 139-211 82-157 (254)
179 PLN02678 seryl-tRNA synthetase 60.9 82 0.0018 32.0 10.3 65 144-212 38-102 (448)
180 COG4768 Uncharacterized protei 60.5 1.2E+02 0.0025 26.6 11.1 78 121-205 24-104 (139)
181 PRK13694 hypothetical protein; 60.1 46 0.001 26.7 6.7 45 148-199 14-58 (83)
182 COG2959 HemX Uncharacterized e 59.9 56 0.0012 32.8 8.7 47 188-236 151-197 (391)
183 smart00787 Spc7 Spc7 kinetocho 59.9 1.7E+02 0.0037 28.3 14.2 81 138-218 164-248 (312)
184 PF15397 DUF4618: Domain of un 59.8 1.5E+02 0.0033 28.2 11.3 45 135-179 63-107 (258)
185 KOG0971 Microtubule-associated 59.3 1.5E+02 0.0032 33.5 12.2 54 215-269 1025-1084(1243)
186 KOG4117 Heat shock factor bind 59.2 60 0.0013 25.2 6.9 43 123-165 11-53 (73)
187 TIGR02231 conserved hypothetic 59.0 1.1E+02 0.0024 30.9 10.9 48 162-209 126-173 (525)
188 cd07667 BAR_SNX30 The Bin/Amph 58.9 92 0.002 29.3 9.6 75 151-225 56-130 (240)
189 KOG0972 Huntingtin interacting 58.8 55 0.0012 32.3 8.3 73 144-219 232-304 (384)
190 cd07667 BAR_SNX30 The Bin/Amph 58.8 1.6E+02 0.0035 27.7 13.8 88 124-218 103-197 (240)
191 cd00632 Prefoldin_beta Prefold 58.8 27 0.00059 27.8 5.4 15 61-75 18-32 (105)
192 PF12329 TMF_DNA_bd: TATA elem 58.5 82 0.0018 24.2 8.8 67 158-224 3-69 (74)
193 PF04344 CheZ: Chemotaxis phos 58.5 1.5E+02 0.0032 27.0 10.7 108 124-231 13-150 (214)
194 PF10475 DUF2450: Protein of u 58.3 1.6E+02 0.0035 27.5 12.4 66 130-195 30-95 (291)
195 PF07851 TMPIT: TMPIT-like pro 57.8 90 0.002 30.7 9.7 46 141-186 13-58 (330)
196 PF05384 DegS: Sensor protein 57.4 42 0.00091 29.6 6.7 36 170-205 58-94 (159)
197 COG4026 Uncharacterized protei 57.2 1.3E+02 0.0028 28.7 10.2 8 123-130 109-116 (290)
198 KOG0999 Microtubule-associated 57.1 2.8E+02 0.006 29.8 14.5 22 252-273 751-772 (772)
199 PF14257 DUF4349: Domain of un 57.0 36 0.00077 31.2 6.6 32 174-205 162-193 (262)
200 PF09769 ApoO: Apolipoprotein 57.0 5.8 0.00012 34.0 1.3 21 7-27 96-116 (158)
201 COG1283 NptA Na+/phosphate sym 56.4 1.3E+02 0.0027 31.6 10.9 94 122-226 336-449 (533)
202 PF09738 DUF2051: Double stran 56.4 30 0.00065 33.4 6.1 78 142-221 101-178 (302)
203 cd07624 BAR_SNX7_30 The Bin/Am 55.8 93 0.002 27.6 8.8 71 151-221 19-89 (200)
204 COG2433 Uncharacterized conser 55.7 1.5E+02 0.0033 31.7 11.4 68 138-205 421-491 (652)
205 PF02646 RmuC: RmuC family; I 55.7 57 0.0012 31.0 7.9 46 124-169 2-47 (304)
206 cd07912 Tweety_N N-terminal do 55.6 67 0.0015 32.4 8.7 86 99-186 93-184 (418)
207 TIGR03818 MotA1 flagellar moto 55.4 62 0.0013 30.8 8.0 92 94-187 5-105 (282)
208 PF02994 Transposase_22: L1 tr 55.4 21 0.00047 34.9 5.1 45 171-215 148-192 (370)
209 PF10779 XhlA: Haemolysin XhlA 55.4 44 0.00096 25.1 5.7 41 172-212 4-51 (71)
210 PF07106 TBPIP: Tat binding pr 55.3 75 0.0016 27.2 7.9 23 186-208 114-136 (169)
211 cd07622 BAR_SNX4 The Bin/Amphi 55.2 1.5E+02 0.0033 26.7 10.1 104 110-228 58-163 (201)
212 PRK10499 PTS system N,N'-diace 55.0 6 0.00013 32.1 1.0 74 7-85 5-82 (106)
213 PF05739 SNARE: SNARE domain; 54.9 73 0.0016 22.5 8.5 45 171-215 8-52 (63)
214 PRK15041 methyl-accepting chem 54.6 2.5E+02 0.0054 28.5 14.2 39 133-171 399-437 (554)
215 cd07630 BAR_SNX_like The Bin/A 54.6 85 0.0018 28.3 8.4 81 117-197 28-109 (198)
216 cd07596 BAR_SNX The Bin/Amphip 54.5 1.4E+02 0.0029 25.5 13.8 47 124-173 60-106 (218)
217 PF00509 Hemagglutinin: Haemag 54.4 18 0.0004 37.7 4.6 61 121-181 364-431 (550)
218 PF08537 NBP1: Fungal Nap bind 54.2 2.1E+02 0.0046 28.2 11.5 35 124-159 100-136 (323)
219 KOG0994 Extracellular matrix g 53.9 1.4E+02 0.0031 34.5 11.3 51 178-228 1581-1631(1758)
220 PF06005 DUF904: Protein of un 53.6 80 0.0017 24.3 7.0 24 182-205 47-70 (72)
221 PF06009 Laminin_II: Laminin D 53.6 4.4 9.4E-05 34.2 0.0 30 184-213 55-84 (138)
222 PF11559 ADIP: Afadin- and alp 53.5 1.3E+02 0.0029 25.1 13.3 87 122-209 29-115 (151)
223 COG1579 Zn-ribbon protein, pos 53.5 1.3E+02 0.0028 28.4 9.6 6 189-194 67-72 (239)
224 PF06156 DUF972: Protein of un 53.4 64 0.0014 26.6 6.8 32 123-154 3-34 (107)
225 PF07111 HCR: Alpha helical co 53.3 3.4E+02 0.0073 29.7 15.5 37 38-75 454-490 (739)
226 TIGR00634 recN DNA repair prot 53.1 1.1E+02 0.0023 31.4 9.9 91 115-209 249-343 (563)
227 PF04012 PspA_IM30: PspA/IM30 52.9 1.7E+02 0.0036 26.0 12.0 41 172-212 96-136 (221)
228 PHA01750 hypothetical protein 52.8 59 0.0013 25.4 6.0 32 117-148 23-55 (75)
229 COG5185 HEC1 Protein involved 52.3 97 0.0021 32.4 9.2 62 109-170 361-424 (622)
230 PF09177 Syntaxin-6_N: Syntaxi 52.0 1.2E+02 0.0025 23.9 10.8 21 145-165 38-58 (97)
231 PF03114 BAR: BAR domain; Int 51.9 1.1E+02 0.0025 25.7 8.4 15 61-75 31-45 (229)
232 COG1340 Uncharacterized archae 51.8 1.5E+02 0.0033 28.8 10.0 66 141-206 57-125 (294)
233 PF05266 DUF724: Protein of un 51.7 1.8E+02 0.004 26.2 10.7 56 148-203 126-181 (190)
234 PF13514 AAA_27: AAA domain 51.7 69 0.0015 35.6 8.7 45 190-234 935-979 (1111)
235 KOG3433 Protein involved in me 51.7 2E+02 0.0043 26.6 11.5 76 113-195 69-144 (203)
236 TIGR00634 recN DNA repair prot 51.5 1.2E+02 0.0025 31.2 9.8 10 61-70 214-223 (563)
237 PF04513 Baculo_PEP_C: Baculov 51.3 1.7E+02 0.0036 25.6 13.1 83 117-205 20-102 (140)
238 PF04100 Vps53_N: Vps53-like, 51.3 2.5E+02 0.0054 27.8 11.7 67 127-193 24-104 (383)
239 KOG3067 Translin family protei 51.2 83 0.0018 29.2 7.7 100 132-231 6-110 (226)
240 PF04375 HemX: HemX; InterPro 51.0 45 0.00098 32.5 6.5 79 97-179 40-119 (372)
241 PF09730 BicD: Microtubule-ass 51.0 3.6E+02 0.0078 29.3 14.5 101 127-235 372-472 (717)
242 PF08702 Fib_alpha: Fibrinogen 51.0 1.6E+02 0.0035 25.3 12.3 96 115-210 23-126 (146)
243 PLN03184 chloroplast Hsp70; Pr 51.0 1.5E+02 0.0032 31.4 10.7 25 139-163 559-583 (673)
244 PF07888 CALCOCO1: Calcium bin 50.9 2.3E+02 0.0049 29.9 11.7 48 171-218 280-327 (546)
245 PRK04098 sec-independent trans 50.7 1.7E+02 0.0037 26.0 9.4 57 124-181 23-79 (158)
246 PF04124 Dor1: Dor1-like famil 50.7 2.3E+02 0.005 27.1 11.2 67 143-209 18-88 (338)
247 cd07666 BAR_SNX7 The Bin/Amphi 50.6 2.2E+02 0.0048 26.7 13.3 37 171-207 160-196 (243)
248 PF02646 RmuC: RmuC family; I 50.3 91 0.002 29.6 8.3 16 183-198 50-65 (304)
249 TIGR01916 F420_cofE F420-0:gam 50.2 13 0.00029 34.9 2.7 72 63-135 126-202 (243)
250 COG1256 FlgK Flagellar hook-as 50.2 1.3E+02 0.0028 31.5 9.9 82 121-206 131-212 (552)
251 PF12777 MT: Microtubule-bindi 50.1 65 0.0014 31.0 7.4 27 126-152 219-245 (344)
252 KOG3385 V-SNARE [Intracellular 50.1 51 0.0011 28.0 5.8 68 150-222 33-100 (118)
253 PF06148 COG2: COG (conserved 50.0 27 0.00059 28.8 4.2 44 125-168 66-109 (133)
254 TIGR00606 rad50 rad50. This fa 49.9 3.2E+02 0.0069 31.2 13.6 15 61-75 797-811 (1311)
255 KOG0812 SNARE protein SED5/Syn 49.8 93 0.002 30.4 8.2 70 162-231 215-288 (311)
256 KOG4593 Mitotic checkpoint pro 49.6 3.8E+02 0.0082 29.2 13.6 97 124-220 115-211 (716)
257 KOG2391 Vacuolar sorting prote 49.6 2.4E+02 0.0052 28.2 11.1 68 117-185 218-285 (365)
258 PF05266 DUF724: Protein of un 49.5 2E+02 0.0043 25.9 10.1 77 150-226 90-169 (190)
259 PHA00276 phage lambda Rz-like 49.4 69 0.0015 28.1 6.7 37 156-192 45-81 (144)
260 PF04111 APG6: Autophagy prote 49.0 1.4E+02 0.0031 28.7 9.4 66 143-208 68-133 (314)
261 PF05478 Prominin: Prominin; 48.9 1.9E+02 0.004 31.3 11.2 38 118-155 159-200 (806)
262 KOG3091 Nuclear pore complex, 48.9 90 0.002 32.4 8.4 66 149-214 337-402 (508)
263 KOG1298 Squalene monooxygenase 48.9 6.9 0.00015 39.8 0.6 18 9-26 48-69 (509)
264 cd09237 V_ScBro1_like Protein- 48.4 1.8E+02 0.0038 28.1 10.1 40 130-169 68-107 (356)
265 PF00957 Synaptobrevin: Synapt 48.4 1.2E+02 0.0026 23.1 8.0 56 137-196 5-60 (89)
266 COG2096 cob(I)alamin adenosylt 48.2 46 0.001 30.2 5.6 68 137-213 38-106 (184)
267 PF03233 Cauli_AT: Aphid trans 48.1 42 0.0009 30.0 5.2 19 193-211 140-158 (163)
268 PF06730 FAM92: FAM92 protein; 47.9 2.4E+02 0.0051 26.4 11.0 75 124-205 14-96 (219)
269 PF10241 KxDL: Uncharacterized 47.9 1.4E+02 0.0029 23.5 8.1 39 137-175 27-65 (88)
270 cd07662 BAR_SNX6 The Bin/Amphi 47.8 98 0.0021 28.8 7.8 27 117-143 47-73 (218)
271 PF10018 Med4: Vitamin-D-recep 47.8 1.1E+02 0.0023 27.1 7.8 11 218-228 83-93 (188)
272 COG3352 FlaC Putative archaeal 47.0 1.2E+02 0.0026 27.1 7.8 87 128-218 51-138 (157)
273 COG5173 SEC6 Exocyst complex s 46.7 2.7E+02 0.0058 29.9 11.5 71 154-227 37-109 (742)
274 PF04380 BMFP: Membrane fusoge 46.7 1.3E+02 0.0029 23.2 8.5 26 187-212 49-74 (79)
275 PRK01919 tatB sec-independent 46.7 1.7E+02 0.0038 26.3 8.9 32 124-155 23-54 (169)
276 TIGR00414 serS seryl-tRNA synt 46.6 92 0.002 31.0 8.0 70 154-223 31-104 (418)
277 PRK10807 paraquat-inducible pr 46.5 59 0.0013 33.6 6.8 22 141-162 438-459 (547)
278 PRK04098 sec-independent trans 46.4 90 0.0019 27.7 7.0 55 114-168 24-89 (158)
279 PF10174 Cast: RIM-binding pro 46.3 2.3E+02 0.0051 30.9 11.4 83 126-208 313-405 (775)
280 PF12128 DUF3584: Protein of u 46.3 1.6E+02 0.0035 33.2 10.6 28 189-216 772-799 (1201)
281 KOG2180 Late Golgi protein sor 46.3 87 0.0019 34.1 8.0 15 150-164 44-58 (793)
282 PF04108 APG17: Autophagy prot 46.2 2.2E+02 0.0048 28.3 10.6 30 118-147 200-229 (412)
283 TIGR01843 type_I_hlyD type I s 46.1 2.6E+02 0.0057 26.4 13.1 15 61-75 86-100 (423)
284 PF13166 AAA_13: AAA domain 46.1 3.6E+02 0.0078 27.9 12.9 55 174-228 417-471 (712)
285 KOG0994 Extracellular matrix g 46.1 1.1E+02 0.0023 35.5 8.9 70 124-195 1228-1307(1758)
286 PF05278 PEARLI-4: Arabidopsis 46.0 2.8E+02 0.0061 26.7 11.6 61 169-229 202-262 (269)
287 cd07627 BAR_Vps5p The Bin/Amph 45.9 2.2E+02 0.0048 25.4 13.6 15 61-75 16-30 (216)
288 PRK15422 septal ring assembly 45.9 1.5E+02 0.0033 23.6 8.4 63 156-218 7-69 (79)
289 PF15290 Syntaphilin: Golgi-lo 45.8 71 0.0015 31.1 6.7 28 179-206 115-142 (305)
290 KOG0995 Centromere-associated 45.8 3.9E+02 0.0084 28.5 12.4 27 115-141 215-241 (581)
291 PF04102 SlyX: SlyX; InterPro 45.7 50 0.0011 24.8 4.7 45 150-194 8-52 (69)
292 PF04791 LMBR1: LMBR1-like mem 45.7 90 0.0019 30.7 7.7 17 92-108 166-182 (471)
293 COG0172 SerS Seryl-tRNA synthe 45.6 2E+02 0.0043 29.3 10.2 66 144-212 34-99 (429)
294 KOG2629 Peroxisomal membrane a 45.5 1.9E+02 0.0041 28.3 9.5 15 61-75 39-56 (300)
295 PF06320 GCN5L1: GCN5-like pro 45.5 1.8E+02 0.0039 24.3 10.3 14 193-206 73-86 (121)
296 PRK04406 hypothetical protein; 45.4 1.1E+02 0.0024 23.6 6.7 39 146-184 11-49 (75)
297 PF11460 DUF3007: Protein of u 45.4 28 0.00061 29.0 3.5 56 92-160 36-92 (104)
298 PF09763 Sec3_C: Exocyst compl 45.3 1.1E+02 0.0024 32.1 8.7 69 137-205 7-75 (701)
299 PF10267 Tmemb_cc2: Predicted 45.1 2.8E+02 0.006 28.0 11.0 78 128-208 219-318 (395)
300 COG4026 Uncharacterized protei 44.9 1.7E+02 0.0038 27.9 9.0 45 178-222 153-197 (290)
301 COG1463 Ttg2C ABC-type transpo 44.9 2.8E+02 0.0062 26.8 10.9 94 125-218 208-301 (359)
302 COG1511 Predicted membrane pro 44.9 2.6E+02 0.0056 30.2 11.5 19 125-143 148-166 (780)
303 PF07295 DUF1451: Protein of u 44.9 2E+02 0.0044 24.9 8.9 89 130-221 6-104 (146)
304 KOG0996 Structural maintenance 44.7 3.8E+02 0.0081 31.1 12.8 78 126-207 512-589 (1293)
305 PRK12482 flagellar motor prote 44.4 1.3E+02 0.0027 29.0 8.2 92 94-187 5-105 (287)
306 PRK10869 recombination and rep 44.3 1.8E+02 0.0039 30.1 9.9 89 114-206 241-335 (553)
307 PF06156 DUF972: Protein of un 44.3 52 0.0011 27.1 5.0 55 148-202 3-57 (107)
308 COG4980 GvpP Gas vesicle prote 44.3 1.6E+02 0.0034 24.9 7.8 20 183-202 92-111 (115)
309 KOG0804 Cytoplasmic Zn-finger 44.0 2.8E+02 0.0061 28.8 10.9 11 15-25 247-257 (493)
310 TIGR02338 gimC_beta prefoldin, 44.0 54 0.0012 26.5 5.0 21 119-140 59-79 (110)
311 KOG2180 Late Golgi protein sor 44.0 3.1E+02 0.0067 30.1 11.6 84 148-231 74-171 (793)
312 KOG0976 Rho/Rac1-interacting s 43.9 3.9E+02 0.0084 30.1 12.4 96 130-225 279-374 (1265)
313 PF06936 Selenoprotein_S: Sele 43.9 75 0.0016 28.8 6.3 62 94-156 36-97 (190)
314 PF05508 Ran-binding: RanGTP-b 43.7 2.3E+02 0.005 27.7 9.9 47 119-165 14-68 (302)
315 PRK10803 tol-pal system protei 43.7 1.1E+02 0.0024 28.5 7.6 38 169-206 63-100 (263)
316 KOG1853 LIS1-interacting prote 43.6 3.2E+02 0.0069 26.6 13.8 84 132-218 49-146 (333)
317 TIGR01843 type_I_hlyD type I s 43.6 2.9E+02 0.0062 26.1 11.6 15 61-75 93-107 (423)
318 PF03962 Mnd1: Mnd1 family; I 43.6 2.4E+02 0.0052 25.2 13.3 118 113-237 57-177 (188)
319 KOG1760 Molecular chaperone Pr 43.3 42 0.00091 29.0 4.3 86 60-155 34-122 (131)
320 cd07623 BAR_SNX1_2 The Bin/Amp 43.3 1.9E+02 0.0042 26.1 8.9 139 61-218 17-172 (224)
321 COG0598 CorA Mg2+ and Co2+ tra 43.2 3E+02 0.0064 26.1 10.6 90 117-206 143-245 (322)
322 TIGR02680 conserved hypothetic 43.1 4.3E+02 0.0092 30.5 13.3 43 169-211 923-965 (1353)
323 PF08580 KAR9: Yeast cortical 43.0 1E+02 0.0022 33.0 8.1 113 113-228 12-135 (683)
324 PF13949 ALIX_LYPXL_bnd: ALIX 42.9 2.6E+02 0.0057 25.5 10.3 37 129-165 23-59 (296)
325 PF03148 Tektin: Tektin family 42.9 3.4E+02 0.0073 26.7 14.0 11 120-130 204-214 (384)
326 PF10224 DUF2205: Predicted co 42.8 1E+02 0.0022 24.4 6.2 42 187-228 22-63 (80)
327 TIGR03007 pepcterm_ChnLen poly 42.7 2E+02 0.0042 28.6 9.6 15 61-75 166-180 (498)
328 PF14257 DUF4349: Domain of un 42.7 92 0.002 28.5 6.9 29 170-198 165-193 (262)
329 PF04111 APG6: Autophagy prote 42.7 3.2E+02 0.0069 26.3 11.2 75 144-218 55-129 (314)
330 PRK10361 DNA recombination pro 42.6 3.2E+02 0.0069 28.3 11.2 15 138-152 39-53 (475)
331 KOG4559 Uncharacterized conser 42.5 82 0.0018 26.5 5.8 49 124-172 57-105 (120)
332 KOG0978 E3 ubiquitin ligase in 42.5 2.8E+02 0.0061 30.1 11.1 83 125-207 535-620 (698)
333 PRK06743 flagellar motor prote 42.4 2.6E+02 0.0057 26.3 9.9 92 95-188 2-102 (254)
334 PHA03395 p10 fibrous body prot 42.4 94 0.002 25.2 5.9 24 184-207 38-61 (87)
335 PF10602 RPN7: 26S proteasome 42.3 78 0.0017 27.6 6.1 58 143-202 4-61 (177)
336 PF10234 Cluap1: Clusterin-ass 42.2 2.8E+02 0.006 26.6 10.1 75 130-205 126-200 (267)
337 PF05377 FlaC_arch: Flagella a 42.1 73 0.0016 23.7 4.9 8 154-161 8-15 (55)
338 COG5283 Phage-related tail pro 42.0 2.1E+02 0.0045 32.9 10.4 89 126-214 27-118 (1213)
339 PHA02414 hypothetical protein 42.0 1.1E+02 0.0024 25.5 6.5 71 150-230 8-78 (111)
340 PF05508 Ran-binding: RanGTP-b 41.6 2.7E+02 0.0058 27.2 10.0 33 137-169 29-61 (302)
341 TIGR03752 conj_TIGR03752 integ 41.6 2.6E+02 0.0056 29.0 10.3 52 149-206 90-141 (472)
342 PF05700 BCAS2: Breast carcino 41.5 2.7E+02 0.0059 25.2 10.9 71 135-208 139-209 (221)
343 COG4717 Uncharacterized conser 41.3 5.7E+02 0.012 28.8 13.3 49 190-238 813-861 (984)
344 cd05564 PTS_IIB_chitobiose_lic 41.2 7.2 0.00016 30.8 -0.5 73 7-84 1-79 (96)
345 KOG0018 Structural maintenance 41.2 2.1E+02 0.0046 32.5 10.2 77 129-209 677-753 (1141)
346 PRK10698 phage shock protein P 41.1 2.8E+02 0.0061 25.3 12.0 42 172-213 97-138 (222)
347 KOG0996 Structural maintenance 40.7 1.6E+02 0.0035 33.8 9.3 78 141-218 400-477 (1293)
348 COG5665 NOT5 CCR4-NOT transcri 40.7 65 0.0014 32.8 5.8 53 126-184 117-175 (548)
349 PF03233 Cauli_AT: Aphid trans 40.6 2.2E+02 0.0048 25.5 8.6 21 120-140 78-99 (163)
350 PRK04654 sec-independent trans 40.5 2.9E+02 0.0063 25.8 9.6 33 124-156 23-55 (214)
351 COG2433 Uncharacterized conser 40.5 3.3E+02 0.0072 29.3 11.1 44 169-212 469-512 (652)
352 PRK13169 DNA replication intia 40.2 65 0.0014 26.9 4.9 33 123-155 3-35 (110)
353 KOG4460 Nuclear pore complex, 40.0 2.8E+02 0.0061 29.7 10.4 68 155-222 576-643 (741)
354 TIGR02492 flgK_ends flagellar 39.9 3E+02 0.0065 26.2 10.0 45 121-165 127-171 (322)
355 PHA03386 P10 fibrous body prot 39.8 1.7E+02 0.0037 24.0 7.2 23 186-208 10-32 (94)
356 PRK02119 hypothetical protein; 39.7 1.3E+02 0.0029 23.0 6.3 38 147-184 10-47 (73)
357 KOG4797 Transcriptional regula 39.5 2.4E+02 0.0052 24.0 8.8 24 187-210 66-89 (123)
358 KOG3758 Uncharacterized conser 39.5 3.8E+02 0.0083 28.8 11.4 86 123-218 51-136 (655)
359 PF07464 ApoLp-III: Apolipopho 39.4 2.3E+02 0.005 24.8 8.5 15 191-205 102-116 (155)
360 TIGR00985 3a0801s04tom mitocho 39.4 2E+02 0.0043 25.2 8.0 21 98-118 16-37 (148)
361 PF02520 DUF148: Domain of unk 39.3 1.5E+02 0.0033 23.7 6.9 9 175-183 69-77 (113)
362 PRK09303 adaptive-response sen 39.1 75 0.0016 30.2 5.9 12 64-75 30-41 (380)
363 PHA03332 membrane glycoprotein 39.0 2.7E+02 0.0059 31.9 10.6 36 168-203 924-963 (1328)
364 PF08172 CASP_C: CASP C termin 38.6 1E+02 0.0022 28.9 6.5 43 140-182 80-122 (248)
365 COG3352 FlaC Putative archaeal 38.5 2.1E+02 0.0046 25.5 8.1 80 114-194 62-142 (157)
366 PF06825 HSBP1: Heat shock fac 38.5 96 0.0021 22.9 5.0 34 132-165 7-40 (54)
367 PLN02320 seryl-tRNA synthetase 38.4 1.2E+02 0.0026 31.5 7.5 15 190-204 146-160 (502)
368 TIGR01000 bacteriocin_acc bact 38.3 3.5E+02 0.0075 26.8 10.6 30 141-170 167-196 (457)
369 PF12761 End3: Actin cytoskele 38.0 1.2E+02 0.0026 27.8 6.7 18 99-117 73-90 (195)
370 PF13094 CENP-Q: CENP-Q, a CEN 38.0 2E+02 0.0043 24.4 7.8 63 142-211 23-85 (160)
371 KOG1029 Endocytic adaptor prot 38.0 94 0.002 34.4 6.8 65 133-197 438-502 (1118)
372 COG5143 SNC1 Synaptobrevin/VAM 37.8 1.3E+02 0.0027 27.6 6.8 53 132-184 126-181 (190)
373 PF07957 DUF3294: Protein of u 37.8 1.4E+02 0.0031 27.8 7.2 34 147-180 5-38 (216)
374 PF05278 PEARLI-4: Arabidopsis 37.6 3.8E+02 0.0083 25.8 12.4 8 71-78 77-85 (269)
375 PRK01156 chromosome segregatio 37.6 4E+02 0.0086 28.7 11.5 18 139-156 166-183 (895)
376 PRK11091 aerobic respiration c 37.6 4.9E+02 0.011 27.1 16.2 32 133-164 90-121 (779)
377 PF12732 YtxH: YtxH-like prote 37.5 1E+02 0.0022 23.1 5.2 16 131-146 29-44 (74)
378 PF05701 WEMBL: Weak chloropla 37.3 4.8E+02 0.01 26.8 13.3 74 155-228 367-440 (522)
379 PF07295 DUF1451: Protein of u 37.2 1.9E+02 0.0042 25.1 7.6 53 137-192 2-58 (146)
380 cd00024 CHROMO Chromatin organ 37.2 28 0.00061 23.6 2.0 24 106-129 22-45 (55)
381 PF01442 Apolipoprotein: Apoli 37.2 2.3E+02 0.0051 23.2 14.0 12 151-162 87-98 (202)
382 PRK04863 mukB cell division pr 37.2 6.2E+02 0.013 29.9 13.5 15 61-75 235-249 (1486)
383 smart00298 CHROMO Chromatin or 37.1 36 0.00078 22.9 2.6 24 106-129 20-43 (55)
384 TIGR02231 conserved hypothetic 37.1 2.6E+02 0.0055 28.3 9.6 89 126-214 69-164 (525)
385 COG4477 EzrA Negative regulato 37.0 3.5E+02 0.0076 28.6 10.5 56 141-196 377-432 (570)
386 PRK02793 phi X174 lysis protei 37.0 1.6E+02 0.0035 22.5 6.3 36 149-184 11-46 (72)
387 PTZ00446 vacuolar sorting prot 36.9 2.6E+02 0.0056 25.4 8.7 30 136-167 112-141 (191)
388 PF12352 V-SNARE_C: Snare regi 36.9 1.6E+02 0.0034 21.2 7.7 9 142-150 8-16 (66)
389 PF14712 Snapin_Pallidin: Snap 36.8 1.9E+02 0.0042 22.1 10.1 34 143-176 11-44 (92)
390 KOG0396 Uncharacterized conser 36.8 3.3E+02 0.0072 27.5 10.0 15 204-218 108-122 (389)
391 KOG0976 Rho/Rac1-interacting s 36.8 4.2E+02 0.0092 29.8 11.4 88 124-218 109-199 (1265)
392 PF13166 AAA_13: AAA domain 36.6 5E+02 0.011 26.9 13.9 51 171-221 421-471 (712)
393 KOG2211 Predicted Golgi transp 36.6 2.1E+02 0.0046 31.2 9.1 82 111-197 54-144 (797)
394 PF10191 COG7: Golgi complex c 36.6 2.3E+02 0.0051 30.5 9.6 50 136-185 46-95 (766)
395 PF05549 Allexi_40kDa: Allexiv 36.6 4E+02 0.0087 25.7 10.4 28 137-164 36-63 (271)
396 COG4372 Uncharacterized protei 36.4 5E+02 0.011 26.8 14.5 148 119-267 170-348 (499)
397 PF12329 TMF_DNA_bd: TATA elem 36.4 1.8E+02 0.004 22.2 6.6 51 155-205 21-71 (74)
398 PRK13169 DNA replication intia 36.3 1.5E+02 0.0033 24.7 6.6 53 148-200 3-55 (110)
399 TIGR00383 corA magnesium Mg(2+ 36.2 2.9E+02 0.0063 25.5 9.2 83 125-207 146-242 (318)
400 KOG0161 Myosin class II heavy 36.1 7.8E+02 0.017 30.0 14.2 49 117-165 897-948 (1930)
401 KOG1029 Endocytic adaptor prot 35.9 3.7E+02 0.008 30.1 10.7 102 114-219 479-590 (1118)
402 PF00038 Filament: Intermediat 35.9 3.6E+02 0.0077 24.9 12.5 68 146-213 68-135 (312)
403 PRK06975 bifunctional uroporph 35.8 3E+02 0.0064 29.2 10.1 54 165-218 376-434 (656)
404 PF02302 PTS_IIB: PTS system, 35.8 10 0.00022 28.4 -0.4 18 7-24 1-18 (90)
405 COG5124 Protein predicted to b 35.5 3.6E+02 0.0078 24.9 11.3 42 113-157 70-111 (209)
406 PRK15422 septal ring assembly 35.3 1.7E+02 0.0036 23.4 6.2 45 162-206 27-78 (79)
407 smart00502 BBC B-Box C-termina 35.2 2.1E+02 0.0045 22.0 11.0 36 127-162 20-55 (127)
408 PF14182 YgaB: YgaB-like prote 35.2 2.3E+02 0.005 22.6 7.6 44 155-198 16-64 (79)
409 PF06008 Laminin_I: Laminin Do 34.8 3.6E+02 0.0079 24.7 13.7 69 135-203 167-235 (264)
410 COG0497 RecN ATPase involved i 34.7 2E+02 0.0044 30.3 8.5 112 114-225 242-365 (557)
411 PLN02279 ent-kaur-16-ene synth 34.6 4.5E+02 0.0098 28.8 11.4 109 106-217 477-595 (784)
412 KOG0964 Structural maintenance 34.6 6.2E+02 0.013 29.0 12.3 109 101-218 653-764 (1200)
413 COG1392 Phosphate transport re 34.5 3.3E+02 0.0071 25.0 9.1 32 115-146 114-145 (217)
414 KOG0811 SNARE protein PEP12/VA 34.5 2.1E+02 0.0046 27.3 8.0 54 165-218 171-224 (269)
415 KOG3595 Dyneins, heavy chain [ 34.5 4.3E+02 0.0093 30.6 11.7 89 114-202 893-997 (1395)
416 TIGR01010 BexC_CtrB_KpsE polys 34.5 4.1E+02 0.009 25.3 11.2 85 122-206 164-260 (362)
417 PF04108 APG17: Autophagy prot 34.3 4.8E+02 0.01 25.9 13.6 74 125-202 241-318 (412)
418 KOG2196 Nuclear porin [Nuclear 34.3 4.2E+02 0.0092 25.3 9.9 59 124-182 144-207 (254)
419 PF04065 Not3: Not1 N-terminal 34.2 4E+02 0.0086 25.0 9.9 111 123-233 73-194 (233)
420 PF06009 Laminin_II: Laminin D 34.1 13 0.00029 31.2 0.0 67 154-220 18-84 (138)
421 COG5185 HEC1 Protein involved 34.1 5E+02 0.011 27.4 11.0 36 11-51 117-153 (622)
422 PF04012 PspA_IM30: PspA/IM30 33.9 3.3E+02 0.0073 24.0 10.1 15 61-75 28-42 (221)
423 PF15456 Uds1: Up-regulated Du 33.9 2.9E+02 0.0063 23.3 9.8 27 130-156 24-50 (124)
424 PRK07191 flgK flagellar hook-a 33.8 3.4E+02 0.0074 27.2 9.8 41 121-161 127-167 (456)
425 PRK00295 hypothetical protein; 33.8 1.9E+02 0.0041 21.8 6.2 37 149-185 8-44 (68)
426 COG3937 Uncharacterized conser 33.8 2.9E+02 0.0063 23.3 9.0 42 170-211 64-106 (108)
427 PF12777 MT: Microtubule-bindi 33.6 1.4E+02 0.0031 28.7 6.8 17 134-150 234-250 (344)
428 TIGR01834 PHA_synth_III_E poly 33.6 3.3E+02 0.0072 26.7 9.3 95 115-209 195-310 (320)
429 cd00193 t_SNARE Soluble NSF (N 33.2 1.5E+02 0.0034 20.0 6.7 17 158-174 11-27 (60)
430 PF11887 DUF3407: Protein of u 32.9 4.1E+02 0.009 24.8 9.9 16 207-222 114-129 (267)
431 smart00503 SynN Syntaxin N-ter 32.5 1.8E+02 0.0038 22.6 6.2 55 174-228 8-65 (117)
432 PF10191 COG7: Golgi complex c 32.4 4E+02 0.0087 28.8 10.6 83 120-205 10-94 (766)
433 KOG0809 SNARE protein TLG2/Syn 32.4 4E+02 0.0086 26.2 9.5 96 123-218 134-262 (305)
434 PRK07739 flgK flagellar hook-a 32.3 3.6E+02 0.0077 27.5 9.8 44 121-164 139-182 (507)
435 PF10280 Med11: Mediator compl 32.3 2.9E+02 0.0062 22.8 8.0 62 154-225 7-75 (117)
436 PHA03386 P10 fibrous body prot 32.3 1.4E+02 0.0031 24.5 5.6 11 196-206 44-54 (94)
437 PRK03947 prefoldin subunit alp 32.3 2.9E+02 0.0063 22.8 10.4 15 150-164 24-38 (140)
438 PF08702 Fib_alpha: Fibrinogen 32.3 3.3E+02 0.0071 23.5 12.2 43 140-182 23-65 (146)
439 cd07595 BAR_RhoGAP_Rich-like T 32.3 4.2E+02 0.0091 24.7 10.7 34 132-165 111-144 (244)
440 KOG1961 Vacuolar sorting prote 32.2 2.1E+02 0.0045 30.8 8.1 55 151-205 73-127 (683)
441 KOG2391 Vacuolar sorting prote 32.2 3.1E+02 0.0066 27.5 8.8 14 28-41 122-135 (365)
442 PRK08124 flagellar motor prote 32.2 3.7E+02 0.0079 25.2 9.1 79 93-173 6-90 (263)
443 PF01920 Prefoldin_2: Prefoldi 32.1 2.3E+02 0.005 21.7 9.7 87 124-211 1-106 (106)
444 cd07647 F-BAR_PSTPIP The F-BAR 32.1 3.9E+02 0.0084 24.2 13.6 42 118-159 96-137 (239)
445 PRK06569 F0F1 ATP synthase sub 32.0 3.6E+02 0.0077 23.8 10.9 49 141-189 36-84 (155)
446 COG4768 Uncharacterized protei 31.9 3.5E+02 0.0076 23.7 8.8 34 175-208 60-93 (139)
447 PF06825 HSBP1: Heat shock fac 31.9 1.3E+02 0.0029 22.1 4.9 38 128-165 10-47 (54)
448 PRK00736 hypothetical protein; 31.9 1.9E+02 0.0041 21.8 5.9 34 149-182 8-41 (68)
449 PLN03094 Substrate binding sub 31.8 1.4E+02 0.0031 29.7 6.6 25 176-200 339-366 (370)
450 PF08010 Phage_30_3: Bacteriop 31.8 48 0.001 29.2 3.0 43 107-150 72-114 (146)
451 PRK09343 prefoldin subunit bet 31.7 1.2E+02 0.0026 25.1 5.3 47 140-186 65-111 (121)
452 TIGR02894 DNA_bind_RsfA transc 31.7 3.8E+02 0.0082 24.0 11.7 65 161-225 81-148 (161)
453 PF07851 TMPIT: TMPIT-like pro 31.7 2.6E+02 0.0057 27.5 8.4 32 122-153 19-50 (330)
454 PRK06665 flgK flagellar hook-a 31.7 3.6E+02 0.0077 28.4 9.9 58 121-178 139-196 (627)
455 PF07544 Med9: RNA polymerase 31.6 1.4E+02 0.003 23.3 5.3 56 131-187 24-79 (83)
456 PRK10920 putative uroporphyrin 31.5 1.2E+02 0.0027 30.3 6.2 120 86-209 34-174 (390)
457 PF00732 GMC_oxred_N: GMC oxid 31.5 15 0.00032 33.1 -0.2 15 9-23 3-17 (296)
458 PRK01203 prefoldin subunit alp 31.5 3E+02 0.0064 23.7 7.7 40 99-151 71-110 (130)
459 PF01494 FAD_binding_3: FAD bi 31.4 15 0.00032 32.9 -0.2 14 9-22 4-17 (356)
460 PRK01026 tetrahydromethanopter 31.3 53 0.0011 26.1 2.9 22 188-216 15-36 (77)
461 TIGR02976 phageshock_pspB phag 31.2 34 0.00074 26.7 1.8 43 119-164 25-67 (75)
462 PF00429 TLV_coat: ENV polypro 30.9 1.3E+02 0.0028 31.4 6.4 64 162-225 423-486 (561)
463 PF05055 DUF677: Protein of un 30.9 5.2E+02 0.011 25.4 10.5 27 185-211 292-318 (336)
464 PF06248 Zw10: Centromere/kine 30.8 6.1E+02 0.013 26.1 11.4 107 122-229 8-132 (593)
465 cd07655 F-BAR_PACSIN The F-BAR 30.7 4.3E+02 0.0094 24.3 13.0 33 122-154 113-145 (258)
466 KOG2577 Transcription factor E 30.7 1.2E+02 0.0025 30.3 5.8 19 99-117 114-138 (354)
467 PRK13729 conjugal transfer pil 30.6 1.3E+02 0.0028 31.1 6.2 37 173-209 75-111 (475)
468 PF13874 Nup54: Nucleoporin co 30.6 1.9E+02 0.0041 24.4 6.4 80 124-207 54-136 (141)
469 PF07160 DUF1395: Protein of u 30.5 2.4E+02 0.0052 26.3 7.6 27 179-205 20-46 (243)
470 PF08340 DUF1732: Domain of un 30.4 80 0.0017 25.5 3.8 23 157-182 37-59 (87)
471 PF10428 SOG2: RAM signalling 30.2 5.2E+02 0.011 26.2 10.4 144 123-271 55-203 (445)
472 PF07106 TBPIP: Tat binding pr 30.2 2E+02 0.0044 24.6 6.6 60 124-187 75-136 (169)
473 PRK09039 hypothetical protein; 30.1 5.2E+02 0.011 25.1 13.2 13 27-39 16-28 (343)
474 PRK10778 dksA RNA polymerase-b 30.0 1.2E+02 0.0027 26.3 5.3 47 110-156 7-56 (151)
475 TIGR01834 PHA_synth_III_E poly 29.8 5.5E+02 0.012 25.3 10.3 16 175-190 290-305 (320)
476 TIGR02338 gimC_beta prefoldin, 29.6 3E+02 0.0065 22.1 10.8 39 189-227 68-106 (110)
477 PRK05683 flgK flagellar hook-a 29.6 4.1E+02 0.0089 28.5 10.0 59 121-179 127-185 (676)
478 COG0172 SerS Seryl-tRNA synthe 29.6 2.2E+02 0.0047 29.1 7.6 65 143-207 33-101 (429)
479 KOG4674 Uncharacterized conser 29.5 9.5E+02 0.021 29.2 13.4 104 123-229 775-878 (1822)
480 KOG4603 TBP-1 interacting prot 29.5 2.9E+02 0.0063 25.4 7.6 61 150-210 83-145 (201)
481 KOG0219 Mismatch repair ATPase 29.5 3.7E+02 0.008 30.0 9.6 94 112-211 370-482 (902)
482 PRK04325 hypothetical protein; 29.4 2.5E+02 0.0055 21.5 6.3 53 142-194 5-57 (74)
483 KOG4677 Golgi integral membran 29.4 6E+02 0.013 26.6 10.6 89 123-211 247-346 (554)
484 COG1730 GIM5 Predicted prefold 29.4 91 0.002 27.2 4.3 110 61-175 25-141 (145)
485 TIGR01554 major_cap_HK97 phage 29.4 2.2E+02 0.0048 27.3 7.4 68 149-216 2-69 (378)
486 PF04124 Dor1: Dor1-like famil 29.3 5.1E+02 0.011 24.7 10.3 80 141-223 9-88 (338)
487 cd07663 BAR_SNX5 The Bin/Amphi 29.2 2.7E+02 0.0059 25.8 7.6 79 117-197 47-125 (218)
488 PF04977 DivIC: Septum formati 29.1 1.6E+02 0.0034 21.5 5.0 40 147-186 18-57 (80)
489 TIGR02350 prok_dnaK chaperone 29.0 4.4E+02 0.0095 27.0 9.9 83 122-204 499-593 (595)
490 KOG0933 Structural maintenance 28.8 8.8E+02 0.019 27.9 12.4 103 124-230 776-878 (1174)
491 COG4064 MtrG Tetrahydromethano 28.7 82 0.0018 24.8 3.5 25 188-219 15-39 (75)
492 TIGR01149 mtrG N5-methyltetrah 28.6 64 0.0014 25.2 2.9 21 188-215 12-32 (70)
493 COG0598 CorA Mg2+ and Co2+ tra 28.4 4.6E+02 0.0099 24.8 9.3 105 115-225 166-271 (322)
494 cd07606 BAR_SFC_plant The Bin/ 28.4 4.5E+02 0.0098 23.8 10.7 97 126-227 83-184 (202)
495 PRK11020 hypothetical protein; 28.3 2.7E+02 0.006 23.7 6.8 55 132-213 2-56 (118)
496 PHA03332 membrane glycoprotein 28.3 1.6E+02 0.0036 33.5 6.9 80 114-196 909-988 (1328)
497 TIGR02977 phageshock_pspA phag 28.2 4.4E+02 0.0096 23.7 10.7 87 123-209 94-180 (219)
498 COG0562 Glf UDP-galactopyranos 28.2 19 0.00041 35.8 -0.1 15 9-23 4-18 (374)
499 PF02388 FemAB: FemAB family; 28.2 77 0.0017 31.2 4.1 71 119-190 233-303 (406)
500 PTZ00400 DnaK-type molecular c 28.2 5.1E+02 0.011 27.3 10.3 91 122-212 542-644 (663)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=2.8e-56 Score=372.21 Aligned_cols=115 Identities=49% Similarity=0.811 Sum_probs=113.6
Q ss_pred hHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 97 IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 97 iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
++++||+|||||||||||||||||||||||+|||++|+|||+|||++|++|||||+||||+||+|||+|.|++++|++||
T Consensus 12 aa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 12 AAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
+++++|+++|++|++.||.+|++||+||++||+||
T Consensus 92 ~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 92 TEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998
No 2
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=97.90 E-value=3.9e-05 Score=64.89 Aligned_cols=94 Identities=10% Similarity=0.188 Sum_probs=85.9
Q ss_pred eEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768 107 YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (277)
Q Consensus 107 YmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i 186 (277)
.||=-..+++|.|-.--++|.+..++++..-+|++.+|....++|.+..+......|+ ...++++++.++.|+..+
T Consensus 33 ~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~e----V~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 33 LMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDE----VTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHH
Confidence 3666788999999999999999999999999999999999999998888888877777 467799999999999999
Q ss_pred hhHHHHHHHHHHhHHHHH
Q 023768 187 GDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki 204 (277)
+..|..++.++..||+|+
T Consensus 109 ~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 109 QQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999999874
No 3
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=97.22 E-value=0.0011 Score=54.09 Aligned_cols=87 Identities=17% Similarity=0.322 Sum_probs=43.4
Q ss_pred hhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 023768 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT- 172 (277)
Q Consensus 94 ~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~i- 172 (277)
++.|.++.+++|++.||+ ++- =||+|..+.. |.+|++..|.++++...-.+.+
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 555666677788888886 222 3566554433 2233333333333322222223
Q ss_pred -HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 173 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 173 -q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
++|+..++..+++++++++.+...+++++-.++.
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555544443
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.95 E-value=0.042 Score=53.33 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.0
Q ss_pred hhhhheeeEEe
Q 023768 100 IVAVGYGYVWW 110 (277)
Q Consensus 100 iGavGYgYmwW 110 (277)
+.++|+||.||
T Consensus 40 ~~alg~~~~~~ 50 (372)
T PF04375_consen 40 ALALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHHH
Confidence 36778888777
No 5
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.22 E-value=0.63 Score=42.32 Aligned_cols=98 Identities=13% Similarity=0.235 Sum_probs=72.4
Q ss_pred heeeEEe----cccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 104 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 104 GYgYmwW----KG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
||.++.- .|| +.+=+-.....+..-+..+.++++++.+.|+.++..+.+|-+.+..++++....+..++++-.++
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888873 378 55555666778899999999999999999999999999999999888888665555555555444
Q ss_pred hhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 180 ~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
...+..++..+..|+.+++.+..
T Consensus 145 -------~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 145 -------KNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666665544
No 6
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=95.08 E-value=0.8 Score=45.65 Aligned_cols=30 Identities=23% Similarity=0.175 Sum_probs=24.0
Q ss_pred hhhcccccccccccCCCCCCCCccccCCcc
Q 023768 237 VQASRYTLSRTTLELPGITPSSRVTFSPIL 266 (277)
Q Consensus 237 ~q~~~s~ssrpalE~p~~tpssr~~s~pp~ 266 (277)
.+..+-.|+||+=|+||--|--|..--.|.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (553)
T PRK15048 520 LTNKPQTPSRPASEQPPAQPRLRIAEQDPN 549 (553)
T ss_pred ccccccccccccccCCccCccCCcCCCCCC
Confidence 455667789999999999998888776664
No 7
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.41 E-value=0.38 Score=39.69 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=44.3
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
=|||++.+...=.+--.-|..+-..+... -...+|+.+..+.+.|-|-++..+.++. ..+.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 38999999866544444455555544432 3344444444555555444444444443 44555666777777
Q ss_pred hHHHHHHHHhh
Q 023768 199 TLESKLIEIEG 209 (277)
Q Consensus 199 ~Le~Ki~~ie~ 209 (277)
.+..+++.||.
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77788888763
No 8
>PRK14011 prefoldin subunit alpha; Provisional
Probab=94.16 E-value=0.32 Score=42.03 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=45.5
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++..||.||.-=| .+..|+++|..||+.++.++++..+..+.+.+++.+
T Consensus 72 VlVdIGtGy~VEk-------------------------------~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~ 120 (144)
T PRK14011 72 AILGVGSDIYLEK-------------------------------DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITK 120 (144)
T ss_pred EEEEccCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998655 567889999999999999999998888888888877
Q ss_pred hhhc
Q 023768 179 LRGR 182 (277)
Q Consensus 179 i~~d 182 (277)
++..
T Consensus 121 l~~~ 124 (144)
T PRK14011 121 LRKE 124 (144)
T ss_pred HHHH
Confidence 7765
No 9
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.90 E-value=2.8 Score=36.66 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=52.7
Q ss_pred HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh--------hhh
Q 023768 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK--------LIG 187 (277)
Q Consensus 120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkh----LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~--------~i~ 187 (277)
+|||..+.+..-.....+.++-..+...+|+ |....+.+...+|+ +-..+++|+..++.++. +++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~---l~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEK---LRQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6889988887777777777777777665554 33444444444444 34455556655555443 466
Q ss_pred hHHHHHHHHHHhHHHHHH
Q 023768 188 DEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~ 205 (277)
++....+..+..++.||+
T Consensus 120 ~e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKID 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677766766666665
No 10
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=93.08 E-value=0.49 Score=38.61 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=45.8
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++.-+|.|||=.+ .+..|+++|..|++.++..+++..+.....+++++.
T Consensus 70 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEK-------------------------------DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999988 458899999999999999999988888888888877
Q ss_pred hhhch
Q 023768 179 LRGRS 183 (277)
Q Consensus 179 i~~dv 183 (277)
+...+
T Consensus 119 i~~~l 123 (126)
T TIGR00293 119 LEQEA 123 (126)
T ss_pred HHHHH
Confidence 66543
No 11
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.93 E-value=2.6 Score=38.49 Aligned_cols=93 Identities=15% Similarity=0.151 Sum_probs=73.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
-+++.++......+..+..+||+..++.-++..+-.++.++++..++.-.++...-+.+.+..+..|+.+++.++.....
T Consensus 23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677788889999999999999998888888899999888888889999999999999999999988876555
Q ss_pred HhHHH----HHHHHHHH
Q 023768 214 TTLGV----KKLCDRAR 226 (277)
Q Consensus 214 tn~GV----~~Lc~~~~ 226 (277)
..--+ ..|-+|++
T Consensus 103 l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 103 LVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44433 44555554
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.81 E-value=4.7 Score=37.36 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 162 lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
|.|...-...+..|=...-+.+.+|+.|+..++..|...+.--......-...-.-+.-|=+.|
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~i 97 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEI 97 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555556677777777777777766555544444444444333333333
No 13
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.80 E-value=0.15 Score=49.45 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
+|+.++.++...|..++..|...+- +|+..|..+...+.+....+-.++..|..+..|+.+.+.||-..-..|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 4445555555555555555544443 3455566666666666666777778888888888888888888888888888
Q ss_pred HHHHHHhhhh
Q 023768 202 SKLIEIEGKQ 211 (277)
Q Consensus 202 ~Ki~~ie~kQ 211 (277)
.|+..+|...
T Consensus 147 ~RV~~LEs~~ 156 (326)
T PF04582_consen 147 SRVKALESGS 156 (326)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHhcCC
Confidence 8888777653
No 14
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.58 E-value=1.5 Score=43.52 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=59.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
..+++++...+...++.+...++.+...+++...-...++.++..++..+.+++.+++.+...+..++.++..++.+.+.
T Consensus 194 ~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~ 273 (562)
T PHA02562 194 QQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQ 273 (562)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666666777777888888888888888888888888888888888777777777777766665544
Q ss_pred HhHH
Q 023768 214 TTLG 217 (277)
Q Consensus 214 tn~G 217 (277)
....
T Consensus 274 ~~~~ 277 (562)
T PHA02562 274 FQKV 277 (562)
T ss_pred HHHH
Confidence 4433
No 15
>PRK11637 AmiB activator; Provisional
Probab=92.40 E-value=1.9 Score=42.28 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhhhHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 126 LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~---~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
..+=...+-+++++....|. .-++++.+.|+.++.++++..+-+..++.++.++..+++....+|...+..+...+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444 333445566666666666666666666666666666666666666666666666555
Q ss_pred HHH
Q 023768 203 KLI 205 (277)
Q Consensus 203 Ki~ 205 (277)
.+.
T Consensus 125 ~l~ 127 (428)
T PRK11637 125 LLA 127 (428)
T ss_pred HHH
Confidence 554
No 16
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.20 E-value=6.4 Score=36.49 Aligned_cols=90 Identities=24% Similarity=0.297 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhhh-HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 126 LSDACNSVARQLED-VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 126 m~~Av~sv~kqLeq-Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
|++|...|-.+-+. +...-..+......+++.+........+-....+.++.+++..+.....++..++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 88888888888774 44555688889999999999999888888999999999999999999999999999999999999
Q ss_pred HHHhhhhHHHh
Q 023768 205 IEIEGKQDITT 215 (277)
Q Consensus 205 ~~ie~kQd~tn 215 (277)
..++.......
T Consensus 247 ~~le~~~~~~~ 257 (312)
T PF00038_consen 247 RELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88876544433
No 17
>PRK11637 AmiB activator; Provisional
Probab=92.02 E-value=1.8 Score=42.44 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 131 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLs---qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
+.+-++|+++-..|...++.+. .++..+..++++...=...+++++.+++.+++.+..++..++..+..++.++...
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555 4444444444444444444444555555555555555555555444444444433
No 18
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=91.87 E-value=2.4 Score=33.81 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (277)
..+|.++-++|.+.|++|+..++.-.+..... .++..++..++.|-..+.+.+...+.+...++..|.-.-..+..
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666665543332222 44445555556666666666666666666666655555555555
Q ss_pred HHHHH
Q 023768 221 LCDRA 225 (277)
Q Consensus 221 Lc~~~ 225 (277)
..+-|
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 44444
No 19
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.26 E-value=1.4 Score=35.82 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=53.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i--~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
..+++.+++++++ ..+.++.+...+.+. ++|++.++..+..++|++..+++.-+..++-+.+|-+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544 477788889999998 9999999999999999999999999888888888865
No 20
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.02 E-value=4.4 Score=34.69 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=47.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
.|+.||+-|...+|+...--+.+...+.++.....++..-|..+..--..+|.|++.++.+-
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 36678888888888877777777777777777777777778888877777888887777654
No 21
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=90.64 E-value=9.7 Score=32.41 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+...++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777788888888877
No 22
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=89.68 E-value=2 Score=35.13 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=41.9
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++.-+|.||+=.+ ++..|++.+..||+.++..+++..+....++++++.
T Consensus 71 v~v~iG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~ 119 (129)
T cd00584 71 VLVDLGTGYYVEK-------------------------------DLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINT 119 (129)
T ss_pred EEEEcCCCEEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999877 456777888888888888888877777777777766
Q ss_pred hhhchh
Q 023768 179 LRGRSK 184 (277)
Q Consensus 179 i~~dv~ 184 (277)
+...+.
T Consensus 120 ~~~~l~ 125 (129)
T cd00584 120 LEAELQ 125 (129)
T ss_pred HHHHHH
Confidence 665543
No 23
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.67 E-value=4.5 Score=38.44 Aligned_cols=68 Identities=15% Similarity=0.275 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
|.-...+...++.+...|+.+|.++++...=+...++++++.+.++..+..+|+.++.-|..-...+.
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777888888888888888877777777777777777777777777777666655554444
No 24
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=89.58 E-value=2.2 Score=35.51 Aligned_cols=52 Identities=25% Similarity=0.351 Sum_probs=35.5
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
|+.-+|+||+=.+- +..|.+.|..|++.++..+++..+....+++++..
T Consensus 78 V~v~lG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~ 126 (140)
T PRK03947 78 VIVSLGAGYSAEKD-------------------------------LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ 126 (140)
T ss_pred EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999883 46777777777777777776665555555554444
Q ss_pred hhh
Q 023768 179 LRG 181 (277)
Q Consensus 179 i~~ 181 (277)
+..
T Consensus 127 ~~~ 129 (140)
T PRK03947 127 LAQ 129 (140)
T ss_pred HHH
Confidence 433
No 25
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=89.28 E-value=9.6 Score=32.51 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~ 174 (277)
|.+-+.|.....||.+-.+.|+.-..+|.+||-.+|..+....+...+-|+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk 77 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQK 77 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999998776444444343
No 26
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=88.85 E-value=3.7 Score=35.09 Aligned_cols=59 Identities=8% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~-i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.....++.+.....++++...|+ .|..+-..+.- .+.||+.|+..|..|+.++..+..+
T Consensus 72 ~~~~~~~~~~~~~~dklE~~fd~----------rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~~ 131 (132)
T PF05597_consen 72 SRVDDVKERATGQWDKLEQAFDE----------RVARALNRLGVPSRKDVEALSARIDQLTAQVERLANK 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555555555555555554444 23333222221 3689999999999999998887764
No 27
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=88.74 E-value=6.1 Score=30.57 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=12.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
++-++++...+....+++..-...+++.+.+
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444444444444444443333333344444
No 28
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=88.69 E-value=2 Score=42.65 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=28.9
Q ss_pred CCcchhhh--HHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768 90 GAKKYGVI--VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (277)
Q Consensus 90 g~~~~~~i--v~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD 159 (277)
+|...+++ +++-++|+||-|| |. --.......-..+..+|+.+.......+..|.+.+..++
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~ 98 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQA 98 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444543 2345777777666 22 112223444455555555554444444444444444333
No 29
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=88.61 E-value=4.6 Score=31.27 Aligned_cols=45 Identities=4% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+.+-+++......+.+.++++.+.+....++..+-+.++..-+++
T Consensus 18 ~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~d 62 (90)
T PF06103_consen 18 IKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLED 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554444444444444
No 30
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=88.57 E-value=9 Score=29.59 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=52.9
Q ss_pred HhhhhHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 135 RQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 135 kqLeqVs~sL~---~tKkhLsqRId~vD~klde~~ei~~~i--q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
-.|+.+.+.|. .....|.++|+.+..+++++.++.... -+.+. -...+.+|+..|..++..+..|..|+..++
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444 456789999999999998887755544 22333 777788899999999999999999888664
No 31
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=88.40 E-value=1.3 Score=35.39 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=38.8
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++.-+|.||+=++ ++..|.+.|..|++.+..++++..+-.+.+++++..
T Consensus 61 vlV~lG~~~~vE~-------------------------------s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~ 109 (120)
T PF02996_consen 61 VLVSLGAGYYVEM-------------------------------SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQ 109 (120)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999988 457788888888888888887776655555555544
Q ss_pred hhhc
Q 023768 179 LRGR 182 (277)
Q Consensus 179 i~~d 182 (277)
+...
T Consensus 110 ~~~~ 113 (120)
T PF02996_consen 110 LEQT 113 (120)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 32
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=1.2 Score=42.86 Aligned_cols=32 Identities=19% Similarity=0.481 Sum_probs=18.4
Q ss_pred chhh-hHHhhhhhe-eeEEecccCCCchHHHhhhh
Q 023768 93 KYGV-IVVIVAVGY-GYVWWKGWKLPDMMFATRRS 125 (277)
Q Consensus 93 ~~~~-iv~iGavGY-gYmwWKG~s~SDlM~VTkr~ 125 (277)
.|+. .++.+++-| +|-.||-| +-=+||.-.++
T Consensus 85 dy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~~ 118 (300)
T KOG2629|consen 85 DYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESKD 118 (300)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccch
Confidence 4443 234455666 47889999 44455555544
No 33
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=87.67 E-value=9.7 Score=35.13 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=58.4
Q ss_pred hhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhhhhhh-------HHHHHHHHHHHHHHHHHhhhchhhhhhH---HH
Q 023768 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRD-------VNKIVEISQATQEEVTILRGRSKLIGDE---FQ 191 (277)
Q Consensus 124 r~m~~Av~sv~--kqLeqVs~sL~~tKkhLsqRId~vD~k-------lde~~ei~~~iq~eV~~i~~dv~~i~~d---v~ 191 (277)
|.|-+|...++ +.|++..+.|-.|+..|+--|+....- .|.+..++..+.++...+.....++... ..
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777664 677788888888888887766655433 2333333333444444444432221110 22
Q ss_pred HHHHHHHh--------------HHHHHHH---HhhhhHHHhHHHHHHHHHHHhhcCC
Q 023768 192 SVRDIVQT--------------LESKLIE---IEGKQDITTLGVKKLCDRARELENG 231 (277)
Q Consensus 192 ~v~~~V~~--------------Le~Ki~~---ie~kQd~tn~GV~~Lc~~~~~~~~~ 231 (277)
.++..+.. +...+-+ -..-||.|-+=|....+-++.+|..
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~ 162 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQ 162 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHH
Confidence 22222222 2223322 3447888888887777777666544
No 34
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=86.99 E-value=2.3 Score=33.01 Aligned_cols=78 Identities=15% Similarity=0.320 Sum_probs=43.7
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
|+-+++-+.+...-++..+......-...++++.++++..=.+||=+ +++|....+.= +...+..+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~~~-------L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQKAV-------LARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHHHH-------HHHHHHHHH
Confidence 34445566666666666666666666667777777777766666553 33343333333 334444555
Q ss_pred hHHHHHHHHhh
Q 023768 199 TLESKLIEIEG 209 (277)
Q Consensus 199 ~Le~Ki~~ie~ 209 (277)
.||.|+..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 35
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=86.92 E-value=9.7 Score=37.45 Aligned_cols=78 Identities=14% Similarity=0.270 Sum_probs=45.1
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
|=|=-=+.+++++...+..+|+.++..|..+-..+..|-..+-..++...+-=+..+++++++++...+...-|....
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345555566666666666666666666666666666666666666555555555555555555555444444444444
No 36
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=86.53 E-value=10 Score=29.84 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
.+.+..|+++-+.|....+-...++.+ ++.+..+=-..+..+..|++.++..|+.|..|+..
T Consensus 21 ~~~l~~ln~tn~~L~~~n~~s~~rl~~-------~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 21 AQTLGRLNKTNEELLNLNDLSQQRLAE-------ARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555444 34455555566677888999999999999988863
No 37
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=86.21 E-value=13 Score=32.26 Aligned_cols=81 Identities=12% Similarity=0.238 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~-~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
.++..++.+..+|..+.+.|...-..++.|++.+-..+++. ..+++.++.|.+.+..++...-..|-.+......|-..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46677777778888888888877777777766666665543 23445556666666666655555555555544444444
Q ss_pred HH
Q 023768 204 LI 205 (277)
Q Consensus 204 i~ 205 (277)
+.
T Consensus 115 ln 116 (140)
T PF04513_consen 115 LN 116 (140)
T ss_pred HH
Confidence 43
No 38
>PHA02562 46 endonuclease subunit; Provisional
Probab=86.15 E-value=13 Score=37.04 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=14.3
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
++++..+......+..++..++..+..++.++.
T Consensus 350 ~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~ 382 (562)
T PHA02562 350 KQSLITLVDKAKKVKAAIEELQAEFVDNAEELA 382 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence 333434444444444444444444444444443
No 39
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=86.11 E-value=4.8 Score=42.22 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=29.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~ 181 (277)
..+.+.......+.+.+++|++.++.++.+...-+.+++..+.++.+
T Consensus 367 ~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 367 AELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444455566778888888888777766666666666555543
No 40
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=85.65 E-value=24 Score=35.75 Aligned_cols=98 Identities=16% Similarity=0.320 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhhhhHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------Hhhh
Q 023768 126 LSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRG 181 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~s------------L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~ 181 (277)
+..-+++|..++.+|.+. +..-|++|+..-|+|-.+.|+.+.+++.+|+||- .+..
T Consensus 178 ~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~k 257 (426)
T smart00806 178 IKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQK 257 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344445555555555443 6677999999999999999999999999999874 3444
Q ss_pred chhhhhhHHHHHHHHHH--------hHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 182 RSKLIGDEFQSVRDIVQ--------TLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 182 dv~~i~~dv~~v~~~V~--------~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
|++....+++.++.-+. .+|.-++.+.+-|+|.+.=-.++..
T Consensus 258 di~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~D 307 (426)
T smart00806 258 ELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIAD 307 (426)
T ss_pred HHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555443 3667888888899888765544333
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.44 E-value=11 Score=34.32 Aligned_cols=60 Identities=12% Similarity=0.292 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
.|++-++.+..+|.++-......+..+.++++..+....+.++=-++.++++..++..+.
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666666666666666665555555566666655554433
No 42
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=85.16 E-value=3.8 Score=32.37 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=15.1
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkh 150 (277)
+++.|.++|.++..+|+.+..+|..+.++
T Consensus 40 ~~~eL~~~l~~ie~~L~DL~~aV~ive~n 68 (97)
T PF09177_consen 40 LKRELRNALQSIEWDLEDLEEAVRIVEKN 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555555555555555555554444
No 43
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=85.07 E-value=15 Score=35.34 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=72.3
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh--------------
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG-------------- 187 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~-------------- 187 (277)
.-+.+-.=+.++..|+|.+...|...+.+|...+..+|.-.++..+..+++..-+.....-...+.
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 445555568999999999999999999999999999998877776666665554332222222222
Q ss_pred ----hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 188 ----DEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 188 ----~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
..+..+.+.+..||.|+..++--+..+.++.
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~ 199 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTA 199 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2456678888999999999888888888777
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.94 E-value=15 Score=41.05 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=74.8
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
--.|.|.+.-..+-+ .++.-..+...=+...+++...+.++-+..+-.+.++++++.-...+..++.|++.....+..+
T Consensus 278 ~~~~ql~~~~~~i~~-~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~ 356 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKK-KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDL 356 (1074)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334455444444332 2223333344444455666666767777777777788888888888888889999999988889
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHhhcC
Q 023768 201 ESKLIEIEGKQDITTLGVKKLCDRARELEN 230 (277)
Q Consensus 201 e~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~ 230 (277)
+.++...+..-+..-.-+.+||.-|..++.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~ 386 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEK 386 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877777888888887765543
No 45
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=84.67 E-value=29 Score=34.65 Aligned_cols=17 Identities=24% Similarity=-0.042 Sum_probs=9.8
Q ss_pred ccCCCCCCCCccccCCcc
Q 023768 249 LELPGITPSSRVTFSPIL 266 (277)
Q Consensus 249 lE~p~~tpssr~~s~pp~ 266 (277)
+-.|+++ |+|+.+=||.
T Consensus 520 ~~~~~~~-~~~~~~~~~~ 536 (553)
T PRK15048 520 LTNKPQT-PSRPASEQPP 536 (553)
T ss_pred ccccccc-cccccccCCc
Confidence 3344444 3677777774
No 46
>PRK09039 hypothetical protein; Validated
Probab=84.65 E-value=31 Score=33.48 Aligned_cols=61 Identities=8% Similarity=0.199 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
.......+..|+..+.++|++.+..+...+.+|..++..++.++.-+..++..+...|.+.
T Consensus 107 ~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 107 LAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred hhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457888888888899988888887777777777777776666666666666555443
No 47
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.58 E-value=21 Score=36.68 Aligned_cols=14 Identities=7% Similarity=0.415 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhc
Q 023768 61 LLAEVSSVQQELSH 74 (277)
Q Consensus 61 l~aQV~~L~~El~~ 74 (277)
+..+|..|+++|.+
T Consensus 254 i~~~i~~l~~~i~~ 267 (569)
T PRK04778 254 IEKEIQDLKEQIDE 267 (569)
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555555555
No 48
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.48 E-value=17 Score=33.11 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=49.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
..||+.+..++++...+.........++...+..+..++......+..+|.|+..++..-.....-+.
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777888888888888888888888888777777765555544443
No 49
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.25 E-value=6.2 Score=38.79 Aligned_cols=83 Identities=13% Similarity=0.260 Sum_probs=53.8
Q ss_pred CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhh-------hHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-------DVNKIVEISQATQEEVTILRGRSKLI 186 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~-------klde~~ei~~~iq~eV~~i~~dv~~i 186 (277)
++...+-.||..|...-+.+++.||++..+ .|||+++++.+-. ++.+..+--++...-|++....+.+|
T Consensus 231 ~I~~~~~~~~~~L~kl~~~i~~~lekI~sR----Ek~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 231 SIESALPETKSQLDKLQQDISKTLEKIESR----EKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467888999999999888888888876654 5566665555433 34444444444444566666666666
Q ss_pred hhHHHHHHHHHHhH
Q 023768 187 GDEFQSVRDIVQTL 200 (277)
Q Consensus 187 ~~dv~~v~~~V~~L 200 (277)
.++++.++..+..=
T Consensus 307 seeLe~vK~emeer 320 (359)
T PF10498_consen 307 SEELEQVKQEMEER 320 (359)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666444433
No 50
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=83.18 E-value=4.8 Score=31.58 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHhHHHHHH
Q 023768 187 GDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~ 205 (277)
..-++.+...+..|+.++.
T Consensus 41 ~~klDa~~~~l~~l~~~V~ 59 (75)
T PF05531_consen 41 NKKLDAQSAQLTTLNTKVN 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333434444444333
No 51
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.79 E-value=17 Score=39.00 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=22.7
Q ss_pred HHHHHHHhhhhHHHH-HHHHHHHHHHhHhhhhhhH
Q 023768 129 ACNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 129 Av~sv~kqLeqVs~s-L~~tKkhLsqRId~vD~kl 162 (277)
..+++.+|+++|-.. ...++.|+...+++++..+
T Consensus 188 ~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 188 FLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 345566677777666 6777777777777776554
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.44 E-value=45 Score=31.88 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=46.2
Q ss_pred eeEEeccc--CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHH---HHHHHHhHhhhhhhHHHHH----HHHHHHHHHH
Q 023768 106 GYVWWKGW--KLPDMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIV----EISQATQEEV 176 (277)
Q Consensus 106 gYmwWKG~--s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~t---KkhLsqRId~vD~klde~~----ei~~~iq~eV 176 (277)
-|-|+.-+ .+-+-+--....|.+-.+.+.++++.+.+.+... +..|..++.++....++.. +-....+.++
T Consensus 139 WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL 218 (325)
T PF08317_consen 139 WYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQEL 218 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 45554333 1233444455556666666666666665554444 3444455555444433211 1122333333
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.....++...+.++..++..+..++.++..++.
T Consensus 219 ~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~ 251 (325)
T PF08317_consen 219 AEQKEEIEAKKKELAELQEELEELEEKIEELEE 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333444444444444444444333
No 53
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=81.29 E-value=4.1 Score=33.19 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=9.5
Q ss_pred HhhhhheeeEEeccc
Q 023768 99 VIVAVGYGYVWWKGW 113 (277)
Q Consensus 99 ~iGavGYgYmwWKG~ 113 (277)
++.+.-+||+||-.+
T Consensus 11 ~lvl~L~~~l~~qs~ 25 (110)
T PF10828_consen 11 VLVLGLGGWLWYQSQ 25 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444556677888654
No 54
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=80.83 E-value=12 Score=31.06 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 166 VEISQATQEEVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 166 ~ei~~~iq~eV~~i~~dv~~-i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.++-+.+++.|..+-.++.- .+.||+.|+..|..||.++..++.
T Consensus 73 ~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 73 DKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777766666543 468999999999999999987754
No 55
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=80.83 E-value=5.6 Score=37.07 Aligned_cols=54 Identities=9% Similarity=0.121 Sum_probs=33.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.+|++.+...++......-+++.++..++.|+.+++++|+....-++.+..+..
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 466666666666555555566666766666666666666666655555555444
No 56
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=80.65 E-value=16 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 023768 189 EFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.|..+..+|..|+.-..++|.|
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444554444444444443
No 57
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=80.33 E-value=16 Score=27.51 Aligned_cols=64 Identities=11% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.|....+.|.+.|+..+..|.+ +...=-.+.-++.+.+..+..++..|+..+..|...+..+..
T Consensus 23 ~i~~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~~ 86 (87)
T PF08700_consen 23 EIRQLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQE 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555566666666655544 355545566677777777777888888777777777776543
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.26 E-value=19 Score=36.95 Aligned_cols=119 Identities=13% Similarity=0.273 Sum_probs=70.8
Q ss_pred heeeEEecccCCCchHHHhh--------------------hhHHHHHHHHHHhhhhHHHHHH---HHHHHHHHhHhhhhh
Q 023768 104 GYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDR 160 (277)
Q Consensus 104 GYgYmwWKG~s~SDlM~VTk--------------------r~m~~Av~sv~kqLeqVs~sL~---~tKkhLsqRId~vD~ 160 (277)
||-=|-=+|..|.++-.-.+ ......+..+.++++++|+.|. .||+...+....+.+
T Consensus 238 gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~ 317 (569)
T PRK04778 238 GYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD 317 (569)
T ss_pred HHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 55557777888887633222 1234456667778888887775 366666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHhhhc----------hhhhhhHHHHHH---------------------HHHHhHHHHHHHHhh
Q 023768 161 DVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVR---------------------DIVQTLESKLIEIEG 209 (277)
Q Consensus 161 klde~~ei~~~iq~eV~~i~~d----------v~~i~~dv~~v~---------------------~~V~~Le~Ki~~ie~ 209 (277)
.++...+-...++.++..++.. +..+..+++.+. .....+..++..++.
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~ 397 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK 397 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555 333333333333 334445555666666
Q ss_pred hhHHHhHHHHHHH
Q 023768 210 KQDITTLGVKKLC 222 (277)
Q Consensus 210 kQd~tn~GV~~Lc 222 (277)
.|.--..-+..|+
T Consensus 398 eq~ei~e~l~~Lr 410 (569)
T PRK04778 398 EQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 59
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=80.26 E-value=36 Score=28.99 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=67.0
Q ss_pred HHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 023768 98 VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (277)
Q Consensus 98 v~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~ 177 (277)
+++++++|++=- -.++..=.+++..+++++-..=..-+....++.+.++..+.++.+.-..+.+...
T Consensus 10 lllss~sfaA~~-------------~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~ 76 (126)
T PF09403_consen 10 LLLSSISFAATA-------------TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIE 76 (126)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356666665432 2566667888899999888888889999999999999999999999999999877
Q ss_pred Hhhhc--hhhhhhHHHHHHHHHHhHHHHHH-HHhhhhHH
Q 023768 178 ILRGR--SKLIGDEFQSVRDIVQTLESKLI-EIEGKQDI 213 (277)
Q Consensus 178 ~i~~d--v~~i~~dv~~v~~~V~~Le~Ki~-~ie~kQd~ 213 (277)
.+..+ ++-++++.+.|=..-.++=.+|+ +|..+|..
T Consensus 77 kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~i 115 (126)
T PF09403_consen 77 KLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQI 115 (126)
T ss_dssp HHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 44566666665555554444444 34444433
No 60
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=80.19 E-value=15 Score=35.98 Aligned_cols=100 Identities=16% Similarity=0.335 Sum_probs=71.4
Q ss_pred cccCC-CchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 023768 111 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (277)
Q Consensus 111 KG~s~-SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~d 189 (277)
|-|.+ -|-|-.-|+|...++..++-+|++++..|..+-..+..|--.+...|.-...--+...++.++++..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788999999999999999999999999999888888888888777665544455555666776666655555
Q ss_pred HH----HHHHHHHhHHHHHHHHhhh
Q 023768 190 FQ----SVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 190 v~----~v~~~V~~Le~Ki~~ie~k 210 (277)
|. .+..++..+|.+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 53 3555555555555555543
No 61
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=79.79 E-value=35 Score=36.58 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch-----------hhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS-----------KLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv-----------~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
-++.|+.+-+.+.+|+++..+-++.+.+.+..+..-+ .++..+++.++..++.|..+++.+..+.+.
T Consensus 587 ~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 587 ERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666665555555554443322 225556666666666666666655444433
No 62
>PRK04406 hypothetical protein; Provisional
Probab=79.63 E-value=9.7 Score=29.50 Aligned_cols=37 Identities=8% Similarity=0.070 Sum_probs=22.8
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv 183 (277)
+...+.+||+.|..++--|...+....+-|.+-+..+
T Consensus 5 ~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I 41 (75)
T PRK04406 5 TIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLI 41 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445777777777777666555555555555554443
No 63
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=79.62 E-value=37 Score=30.99 Aligned_cols=71 Identities=10% Similarity=0.206 Sum_probs=45.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
...++..+--+.+...+..|.++++.+...++....-.+..++.|...+..+..+..+++.+..+=..|..
T Consensus 35 ~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 35 QAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566677777777777777777777766666666666666666666666666666644444443
No 64
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=79.46 E-value=26 Score=33.97 Aligned_cols=111 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcchhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHH---HHHhhhhHHHHHHHH-HHHHHHhHhhhhhhHHHHH
Q 023768 91 AKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNS---VARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 91 ~~~~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~s---v~kqLeqVs~sL~~t-KkhLsqRId~vD~klde~~ 166 (277)
|++.|++ .+||-+. |.|| .+++.|-.+ ....||+|.+.+... -..|...|..+.+.+++|+
T Consensus 23 GGp~Gl~-ml~AgA~-Y~~y-------------Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~ 87 (301)
T PF06120_consen 23 GGPPGLV-MLGAGAW-YYFY-------------QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQK 87 (301)
T ss_pred cchHHHH-HHHHHHH-HHHH-------------HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhch---------------hhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhH
Q 023768 167 EISQATQEEVTILRGRS---------------KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (277)
Q Consensus 167 ei~~~iq~eV~~i~~dv---------------~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (277)
.-+...++++..++..+ ..+...+.++.+..+.+...-..+...|...+.
T Consensus 88 ~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 88 RAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 65
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=79.44 E-value=1.2 Score=43.53 Aligned_cols=57 Identities=18% Similarity=0.302 Sum_probs=17.0
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCC
Q 023768 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 231 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~ 231 (277)
+|+.+..++......|..++..|.+++..+.-+...+.-.--=|..|-+-+..+|.+
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 344444444444444444555555555555444333322222234555555555444
No 66
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.37 E-value=41 Score=34.12 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=57.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 214 (277)
++|++....|+...+.+ ....++..+...-.+..+.++..+..-+.++..|++.++..+..++.++..++..+ +.
T Consensus 38 ~~l~q~q~ei~~~~~~i----~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALEKKI----REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 77777777776655444 34444555555557777778888888888888889999999999998888877654 66
Q ss_pred hHHHH
Q 023768 215 TLGVK 219 (277)
Q Consensus 215 n~GV~ 219 (277)
..++.
T Consensus 113 qr~~L 117 (420)
T COG4942 113 QRRRL 117 (420)
T ss_pred HHHHH
Confidence 66663
No 67
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.21 E-value=31 Score=27.62 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=4.3
Q ss_pred HHHHHHHHHhh
Q 023768 218 VKKLCDRAREL 228 (277)
Q Consensus 218 V~~Lc~~~~~~ 228 (277)
|+.|=+|+..+
T Consensus 82 v~~LD~ysk~L 92 (99)
T PF10046_consen 82 VYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 68
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=79.19 E-value=17 Score=36.75 Aligned_cols=88 Identities=16% Similarity=0.283 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHHh--------H
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQT--------L 200 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~dv~~i~~dv~~v~~~V~~--------L 200 (277)
-..|..-|++|..+-++|-.++|+.+.+++.+++||. .+..|+.....++..++.-+.. |
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 4457777888888888888888888888888888764 3445555555555555555543 5
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 201 ESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 201 e~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
|.-+..|..-|+|-+.=-.++-+.-+.+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888887766554544444
No 69
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=78.78 E-value=26 Score=35.58 Aligned_cols=83 Identities=14% Similarity=0.224 Sum_probs=65.1
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH---HHHHhhc
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC---DRARELE 229 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc---~~~~~~~ 229 (277)
.++..+-.++.+|.++-+.+++-+..-+.|++.+..||+.||+.-..|..|+.--.......+..|..+. +.+..+-
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~ 93 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSIC 93 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHh
Confidence 5677788888889999999999999999999999999999999999999999966666666666664432 4444555
Q ss_pred CCCcch
Q 023768 230 NGRPTE 235 (277)
Q Consensus 230 ~~~~~~ 235 (277)
+++.-+
T Consensus 94 ~~~v~e 99 (508)
T PF04129_consen 94 EGPVNE 99 (508)
T ss_pred cCCCCH
Confidence 555444
No 70
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=78.66 E-value=43 Score=28.92 Aligned_cols=8 Identities=13% Similarity=0.422 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 023768 219 KKLCDRAR 226 (277)
Q Consensus 219 ~~Lc~~~~ 226 (277)
.++++.++
T Consensus 175 ~~l~~~~~ 182 (191)
T PF04156_consen 175 QQLEEKIQ 182 (191)
T ss_pred HHHHHHHH
Confidence 33444443
No 71
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=78.30 E-value=45 Score=30.58 Aligned_cols=10 Identities=0% Similarity=0.159 Sum_probs=3.6
Q ss_pred hHHHHHHHHH
Q 023768 188 DEFQSVRDIV 197 (277)
Q Consensus 188 ~dv~~v~~~V 197 (277)
.-+++++..+
T Consensus 213 ~~v~~l~~~~ 222 (291)
T TIGR00996 213 RLLDNLATLT 222 (291)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 72
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=78.03 E-value=11 Score=34.35 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=11.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHH
Q 023768 145 SAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 145 ~~tKkhLsqRId~vD~klde~ 165 (277)
+.-=-.|.-|||+++..+|+.
T Consensus 78 A~lvinlE~kvD~lee~fdd~ 98 (189)
T TIGR02132 78 ASLVINLEEKVDLIEEFFDDK 98 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333345556666666665553
No 73
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=77.78 E-value=12 Score=33.54 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
||...|+.+-.+|.+.+|.+...|++. ++++.+++.. ++.+....+.++.+..-|+..++..+
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~e---I~~L~~~i~~----le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDE---IKQLEKEIQR----LEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766666655442 3333333322 24455667777777888888777554
No 74
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=77.61 E-value=47 Score=28.84 Aligned_cols=25 Identities=12% Similarity=-0.023 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQ 148 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tK 148 (277)
+++-.+++.+...++.+......+.
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~vd 88 (204)
T PF04740_consen 64 QGLILLLEEYQEALKFIKDFQSEVD 88 (204)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHc
Confidence 4455666666666655555554443
No 75
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=77.46 E-value=59 Score=36.33 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=16.5
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+.+........++...+.....++..+..++.+.+-....+
T Consensus 867 ~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 907 (1163)
T COG1196 867 ELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEI 907 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333333333
No 76
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=77.22 E-value=26 Score=36.52 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=69.1
Q ss_pred CCchHHH----hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768 115 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 115 ~SDlM~V----Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
|++..|. +||+|.. .+.+.+=.....+-..=+.+.++|+++...+++..++...+++.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~---~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRS---DIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 7888865 45566777777777788888899999999999999999999999988888888877777
Q ss_pred HHHHHHHHhHHHHHHH
Q 023768 191 QSVRDIVQTLESKLIE 206 (277)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ 206 (277)
..++..-..+|.|...
T Consensus 83 ~~L~~~~~~~~~k~~l 98 (618)
T PF06419_consen 83 SELREQKEELELKKKL 98 (618)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666655443
No 77
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.08 E-value=35 Score=30.52 Aligned_cols=79 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhhHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHh-hhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEE-VTIL-RGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~t-KkhLsqRId~vD~klde~~ei~~~iq~e-V~~i-~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
.+|++-+|++++.+...-.. +.-++.-++.+.....+...-...+..+ |..+ ..+.+.+.+-+.......+.|..+|
T Consensus 22 s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i 101 (165)
T PF09602_consen 22 SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKI 101 (165)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877655433 2334444444444444433333333322 3333 2233344555555555555555555
Q ss_pred HH
Q 023768 205 IE 206 (277)
Q Consensus 205 ~~ 206 (277)
..
T Consensus 102 ~e 103 (165)
T PF09602_consen 102 QE 103 (165)
T ss_pred HH
Confidence 44
No 78
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.75 E-value=7.8 Score=29.21 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=26.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
+.+||+.|..++--+...+....+.|.+-+.. |+.++..+..|..|+..++
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhc
Confidence 45667777666666655555555556555444 4445555555555555544
No 79
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=76.63 E-value=30 Score=26.05 Aligned_cols=34 Identities=9% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD 159 (277)
+-+-|..|...++++...+...++--...+...+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~ 38 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD 38 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3466888889999999999888887777777777
No 80
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.57 E-value=32 Score=31.65 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=7.3
Q ss_pred HHHHHHhhhhHHHHHHH
Q 023768 130 CNSVARQLEDVYSSISA 146 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~ 146 (277)
++.++++|......+..
T Consensus 26 ~e~~~~~L~~~~~~~~~ 42 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNP 42 (264)
T ss_pred HHHHHHHHHHHhccchh
Confidence 34444444444444443
No 81
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=76.17 E-value=25 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=11.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILR 180 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~ 180 (277)
|+.+..++.+.+++...|.++|.+=.
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~ 31 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQN 31 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCH
Confidence 34444444444444444444443333
No 82
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=76.12 E-value=14 Score=32.85 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=40.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
-..-|..+.+.|+.++++..+..+...++|- .=.+=+=+.+|+.+-..+..||.+|..+|.
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vv--sYqll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVV--SYQLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555666665555556666663 333456688899999999999999997553
No 83
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=75.77 E-value=13 Score=32.89 Aligned_cols=96 Identities=20% Similarity=0.342 Sum_probs=42.2
Q ss_pred CCCchHHHhhhhHHHH---HHHHHHhhhhHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 114 KLPDMMFATRRSLSDA---CNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 114 s~SDlM~VTkr~m~~A---v~sv~kqLeqVs~sL~~tKkhLsqR---Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
++.+..+..+.-|+.+ +..+..+|-.....+...++.+..+ |..+........+-.....+++.+....+..+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777655 4567777777777777777766654 444444444444445555667888888889999
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh
Q 023768 188 DEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+++.+++.-...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.28 E-value=19 Score=36.90 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 161 klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
++.++++-..++++++..++.++..+....+..+.+++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556655555555444445555666666666666555554
No 85
>PRK04863 mukB cell division protein MukB; Provisional
Probab=74.96 E-value=55 Score=38.05 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSK 154 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqR 154 (277)
+-.+.+.++++.+......+++++...
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777776643
No 86
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=74.89 E-value=12 Score=29.87 Aligned_cols=46 Identities=11% Similarity=0.236 Sum_probs=36.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
++.|..+|+++...| .||.+|-+++-.+|.+..+-.++|+.+..+-
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888766555 6888999999999999888888888876543
No 87
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=74.83 E-value=49 Score=33.59 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=65.8
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLs-------qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
=-++.+-++.....++|..|...|++-+++|. .+.++++.++.|++..-.++..+...-+..++..+-.=..+
T Consensus 157 ~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 157 PARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34677888888888899999999999888887 56677777777777777777777777777766666666667
Q ss_pred HHHHHhHHHHHHHHhh
Q 023768 194 RDIVQTLESKLIEIEG 209 (277)
Q Consensus 194 ~~~V~~Le~Ki~~ie~ 209 (277)
...+..+|....+..+
T Consensus 237 ~~~Ias~e~~aA~~re 252 (420)
T COG4942 237 KNEIASAEAAAAKARE 252 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7666666655554333
No 88
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=74.75 E-value=13 Score=36.51 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=7.9
Q ss_pred HHHHHHhhhhHHHhHHHHHHHH
Q 023768 202 SKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 202 ~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
.||..|..+=..+-.=|..+|.
T Consensus 71 ~~i~~ik~kA~~sE~~V~~it~ 92 (383)
T PF04100_consen 71 EKISEIKSKAEESEQMVQEITR 92 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 89
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=74.72 E-value=37 Score=26.28 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=18.8
Q ss_pred hHHHhHHHHHHHHHHHhhc-CCCcchhhhhccc
Q 023768 211 QDITTLGVKKLCDRARELE-NGRPTELVQASRY 242 (277)
Q Consensus 211 Qd~tn~GV~~Lc~~~~~~~-~~~~~~~~q~~~s 242 (277)
-......+..+|.|++..= .+...++++..++
T Consensus 84 l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~ 116 (127)
T smart00502 84 LTQKQEKLSHAINFTEEALNSGDPTELLLSKKL 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 3345566677888887543 3455566665443
No 90
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.61 E-value=41 Score=26.63 Aligned_cols=62 Identities=16% Similarity=0.291 Sum_probs=33.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
.++.+..+++.+-. +.++++++|..-... +.+.+.+..++..+...+..+|.++..++..-+
T Consensus 37 ~~r~l~~~~e~lr~---~rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 37 ERRELQQELEELRA---ERNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 445566666553211 145666666666666666666666666655443
No 91
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=74.38 E-value=32 Score=34.22 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-hhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d-v~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+...+|.+..+++.+. .+.++++++|..... -.++ .+.+...++.+...+..||.++..++.+.+.....+
T Consensus 35 ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 35 LDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555555555554 556667888876332 2234 566777777788788888888887777665544443
No 92
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.01 E-value=56 Score=27.97 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
+++..--|+|++=...+..-=+.|+.|++.+...+|+..+-....+..+.+.... ....++++..|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 3444555666666666666666677777777777766655444444444333222 223446666777777666666
Q ss_pred hhhhHHHhHHH
Q 023768 208 EGKQDITTLGV 218 (277)
Q Consensus 208 e~kQd~tn~GV 218 (277)
+.+-.-|+.-+
T Consensus 93 e~~L~e~~ekl 103 (143)
T PF12718_consen 93 EKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHH
Confidence 66555555544
No 93
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=73.95 E-value=43 Score=26.63 Aligned_cols=77 Identities=13% Similarity=0.224 Sum_probs=48.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 214 (277)
..++.+..+|..-.+-+.+|+++.+.. .....++..+..|-+++-.+++....-...||.--.++...=+.+
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~--------~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKR--------DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh--------hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555666655544 445666777777777777778777777777777777777666666
Q ss_pred hHHHH
Q 023768 215 TLGVK 219 (277)
Q Consensus 215 n~GV~ 219 (277)
...|.
T Consensus 80 ~e~Ir 84 (89)
T PF13747_consen 80 IETIR 84 (89)
T ss_pred HHHHH
Confidence 66654
No 94
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.65 E-value=17 Score=28.82 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=35.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh---hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~---~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 222 (277)
|-.+|.+.-+...-....+.+-+.+...+.... .|.+.+..-+..|-.++..++........-+..++
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443334444444444444443332 35666666666666666666666666555555544
No 95
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=73.62 E-value=9.5 Score=37.09 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
..++.|..+-++||+|+.=--.-...|..|++.|.++.|+ -..-.--+.+..+++.++..|++|+..+..
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~ 114 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLEN 114 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988863 111111233556667777777777766653
No 96
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=73.47 E-value=29 Score=25.88 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-hchhhhhhHHHHHHHHHHhHH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-GRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~-~dv~~i~~dv~~v~~~V~~Le 201 (277)
...++++.+.++++...-...| .+.|..++..+++..++..++.-||..+- .+-..+...|...+.-+..|.
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r---~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQR---KSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccChHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777877775443333 34566677788889999999998887774 222234444444444443333
No 97
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=73.18 E-value=15 Score=27.58 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=23.4
Q ss_pred hhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHH
Q 023768 101 VAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA 146 (277)
Q Consensus 101 GavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~ 146 (277)
+++||-|-==+|- =||+.|.+....+..++++..+.+..
T Consensus 13 a~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 13 AAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554444554 46777777777777666666555444
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=73.17 E-value=88 Score=29.88 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=24.9
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
++..++..+.....++...+..+..|+.++.+++.+-+-.+.=.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k 253 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQK 253 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666666666666666665555444444
No 99
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=73.16 E-value=61 Score=27.99 Aligned_cols=15 Identities=0% Similarity=0.288 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
...+|+.+.+++..|
T Consensus 96 ~~~~i~~~a~~~~~l 110 (262)
T smart00283 96 IVSVIDDIADQTNLL 110 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555554
No 100
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=73.07 E-value=61 Score=27.98 Aligned_cols=30 Identities=13% Similarity=0.071 Sum_probs=10.6
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 176 V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+.++...+.+....+......+..+..++.
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 84 (262)
T smart00283 55 AEEGREAVEDAITAMDQIREVVEEAVSAVE 84 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 101
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=72.97 E-value=54 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
.+...+++..|.++...|....++|..-+-.=-..|-++..-++..++.+
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l 74 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVL 74 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHH
Confidence 45566788888888888888888888776555444444433333333333
No 102
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=72.85 E-value=84 Score=35.17 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 161 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 161 klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
.++.+.+.-+..++++.++..++......+..+...++.++.+++.++..+.. ..|+...
T Consensus 447 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~ 506 (1163)
T COG1196 447 ELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRA-SQGVRAV 506 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHH
Confidence 33334444444455556666666666666667777777777777777776665 5555433
No 103
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=72.76 E-value=38 Score=36.33 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHHHHh-hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 126 LSDACNSVARQ-LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 126 m~~Av~sv~kq-LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
+..|++.+.++ ++ ....++.+|..|+..+-...++|.+-...++++...++..-+.+.+-++.+.++=+.|..|+
T Consensus 541 L~~a~~vlreeYi~----~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYIE----KQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666553 33 34578889999999888888888776666666665555555555555555555544555444
Q ss_pred HH
Q 023768 205 IE 206 (277)
Q Consensus 205 ~~ 206 (277)
+.
T Consensus 617 ~~ 618 (717)
T PF10168_consen 617 DR 618 (717)
T ss_pred HH
Confidence 43
No 104
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=72.71 E-value=9.4 Score=30.62 Aligned_cols=41 Identities=15% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
+..|.++|..|++.++..+++..+....++++.+.++..+.
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888888887777776666666666655555433
No 105
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=72.62 E-value=46 Score=34.79 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=23.6
Q ss_pred CCchHHHhhhh--HHHHHHHHHHh---hhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 115 LPDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 115 ~SDlM~VTkr~--m~~Av~sv~kq---LeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
-+||+.||-|. |.+-+.-+-+. |.+....|......|..+++.+...|..
T Consensus 128 ~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 128 NSDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred CcceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888887554 33333333333 3333334444444445555555544443
No 106
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=72.30 E-value=20 Score=32.15 Aligned_cols=48 Identities=13% Similarity=0.361 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHH---HHHHHHHHHHhhhchhhhh
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEI---SQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei---~~~iq~eV~~i~~dv~~i~ 187 (277)
+-..+..++++|...|+.+..+++....+ ++.++++++.+..+++.|.
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666554442222 3344445544444444443
No 107
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=71.87 E-value=33 Score=35.72 Aligned_cols=86 Identities=8% Similarity=0.149 Sum_probs=51.2
Q ss_pred CCchHHHhhhhHHHHH----HHHHHh-------hhhHHHHHHHHHHHHHHhHhhhhhh--------HHHHHHHHHHHHHH
Q 023768 115 LPDMMFATRRSLSDAC----NSVARQ-------LEDVYSSISAAQRQLSSKITSVDRD--------VNKIVEISQATQEE 175 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av----~sv~kq-------LeqVs~sL~~tKkhLsqRId~vD~k--------lde~~ei~~~iq~e 175 (277)
-++.+.-+-+.|+++. +...++ +..|+..+.-..+.|..||..+... +++.....+.+...
T Consensus 334 e~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~ 413 (531)
T PF15450_consen 334 ETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKH 413 (531)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777654 333444 4444445555566666666665443 34444455566666
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 176 VTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 176 V~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
..+|++.++.+..||..|.++...+
T Consensus 414 l~~v~eKVd~LpqqI~~vs~Kc~~~ 438 (531)
T PF15450_consen 414 LKEVQEKVDSLPQQIEEVSDKCDLH 438 (531)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6667777777777777776665443
No 108
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=71.80 E-value=55 Score=26.95 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSI 144 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL 144 (277)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 109
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.68 E-value=22 Score=36.54 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
..+|+.|..--+++.++++.++..+++..+....++++-.+++..+..+..++..++..|+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888889999999999999888888888888888888888888887777664
No 110
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.59 E-value=26 Score=33.48 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=14.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 188 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~ 188 (277)
|++-|.++.+..+-.+.+++|+..+...++.+..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~ 66 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQS 66 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544444444444444444333333333
No 111
>PRK00846 hypothetical protein; Provisional
Probab=71.50 E-value=24 Score=27.77 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
-...+.+||+.|..++--|...+....+.|++-+.. |+.++..+..|-.|+..
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGK 59 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 345678888888888777666666666666554443 34444444444444443
No 112
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=71.39 E-value=47 Score=36.11 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=29.5
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhc
Q 023768 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~ 229 (277)
+.+-..++..+.+.+..+.+++.++.......-.+...+-+|.+.+.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (910)
T TIGR00833 602 VASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMG 648 (910)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666666777777777777666666666666666665554
No 113
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.03 E-value=18 Score=28.29 Aligned_cols=35 Identities=6% Similarity=0.050 Sum_probs=24.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
...|.+||..+.+++--|...+..+-+-|.+-+-.
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~ 37 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLV 37 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688999999999888766666666666554444
No 114
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=70.84 E-value=41 Score=35.66 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=68.3
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
|+.|.+.|++|...+.++..-++.+..|+..-....+++-+++...+++--.|+..=...+..+..-.+.+..|+.|++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888888888888888888888888888888888889999999888888888777888888888888888877765
Q ss_pred hc
Q 023768 228 LE 229 (277)
Q Consensus 228 ~~ 229 (277)
++
T Consensus 161 ~q 162 (632)
T PF14817_consen 161 LQ 162 (632)
T ss_pred HH
Confidence 43
No 115
>PRK09793 methyl-accepting protein IV; Provisional
Probab=70.35 E-value=1.2e+02 Score=30.39 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=8.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRI 155 (277)
+.-..++.+.-..+=+++..-|
T Consensus 396 A~EVR~LAe~t~~a~~~I~~~i 417 (533)
T PRK09793 396 AGEVRNLASRSAQAAKEIKGLI 417 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 116
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.01 E-value=84 Score=28.33 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=30.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 023768 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (277)
Q Consensus 146 ~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~ 191 (277)
....++..|++.+..+++++.+-.+.-++++.+.+..+..-+.++.
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677777777776677777777777766666666555
No 117
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.76 E-value=39 Score=28.48 Aligned_cols=66 Identities=17% Similarity=0.260 Sum_probs=48.6
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
.+|..+++=+-.+.+..+.+.+..... .+|...++.+..+.+..-++-+.--++|.+++.|+..++
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~~~~-~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALKKEV-EELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 467777777777777777775444444 478888888888888888888888888888887765443
No 118
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.53 E-value=19 Score=27.60 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=19.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+.+||..|..++--|...+...-+-|++-+..
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~ 37 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEME 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777666555555555555444444
No 119
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.09 E-value=54 Score=34.15 Aligned_cols=31 Identities=10% Similarity=0.198 Sum_probs=12.9
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
++.+++.++......++.++..+..++.++.
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 436 ELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 120
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=69.03 E-value=1.1e+02 Score=34.52 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 160 ~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
..+++|.+-++-+++.+.++++.++..-.-+...++.....|.++..+-..++..-.-+
T Consensus 281 ~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei 339 (1074)
T KOG0250|consen 281 RQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEI 339 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHH
Confidence 33555555555556666666666666666666666666666666665555554444333
No 121
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.97 E-value=97 Score=31.73 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHh-hhhh------hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKIT-SVDR------DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId-~vD~------klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
-.+|+.-+.-|...+..|.+..+ .++. +..........+..++.+++.++..+..|+..++..|..|...|..
T Consensus 241 e~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 241 ESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555444 1111 1222333456677778888888888888888888888888877775
Q ss_pred HhhhhHHHhH
Q 023768 207 IEGKQDITTL 216 (277)
Q Consensus 207 ie~kQd~tn~ 216 (277)
.-.....+..
T Consensus 321 ~K~el~~lke 330 (522)
T PF05701_consen 321 EKEELERLKE 330 (522)
T ss_pred HHHHHHHHHH
Confidence 5444443333
No 122
>PRK00295 hypothetical protein; Provisional
Probab=68.95 E-value=23 Score=26.79 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=15.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+.+||..|..++--|...+....+.|.+-+..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~ 34 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRV 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444444444444444433
No 123
>PRK02119 hypothetical protein; Provisional
Probab=68.78 E-value=23 Score=27.17 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=16.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+.+||+.|..++--|...+....+-|++-+..
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~ 38 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFV 38 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666555544444444444444333
No 124
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.63 E-value=96 Score=35.16 Aligned_cols=81 Identities=11% Similarity=0.196 Sum_probs=45.1
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
-..-|.++......+...++++-+.+..++..|.---..++..+.+..++...-+.+..+++..+..+..+++.|.....
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMK 958 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777777766666554444444444444444444444455555555555544444444333
Q ss_pred h
Q 023768 199 T 199 (277)
Q Consensus 199 ~ 199 (277)
.
T Consensus 959 ~ 959 (1311)
T TIGR00606 959 D 959 (1311)
T ss_pred H
Confidence 3
No 125
>PRK02224 chromosome segregation protein; Provisional
Probab=68.31 E-value=1.4e+02 Score=31.72 Aligned_cols=6 Identities=33% Similarity=0.656 Sum_probs=2.4
Q ss_pred eeeeEc
Q 023768 8 LTFLVG 13 (277)
Q Consensus 8 v~iLvG 13 (277)
+++|+|
T Consensus 25 ~~~i~G 30 (880)
T PRK02224 25 VTVIHG 30 (880)
T ss_pred eEEEEC
Confidence 344443
No 126
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.22 E-value=27 Score=34.77 Aligned_cols=67 Identities=13% Similarity=0.265 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 214 (277)
+..-+|.+..+++.+..+. ++++++|.... .-++|.+.+..++..+...+..||.++..++.+-+..
T Consensus 33 ld~~~r~l~~~~~~lr~~r---n~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 33 LDEERRELQTELEELQAER---NALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666654 55677776522 1123455566667777777777777777776665443
No 127
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=68.02 E-value=30 Score=31.47 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=22.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+..++-++..|+|...|.-..+-+.+.+-.+--...+.||..+++-+..||.|++
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D 131 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLD 131 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHH
Confidence 3444444555555543333333333332222223333444444444444444444
No 128
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=68.01 E-value=43 Score=29.54 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=18.7
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.+..|...|..++..++.++.+-.+.|..++..
T Consensus 139 ~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 139 KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHH
Confidence 344455666666666666666666666655543
No 129
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.88 E-value=53 Score=33.81 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=21.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ 166 (277)
++|++-+.-+.++|+-+.+|...++.|++++.
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666677777777777777777776653
No 130
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=67.69 E-value=31 Score=29.78 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.9
Q ss_pred HHhhhhheeeEEecc
Q 023768 98 VVIVAVGYGYVWWKG 112 (277)
Q Consensus 98 v~iGavGYgYmwWKG 112 (277)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556667888875
No 131
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=67.42 E-value=20 Score=28.12 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=28.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~ 199 (277)
|.+-.||++|+.. -++|...|++=-.++ +--|+|++.+++.|..
T Consensus 7 r~~ieRiErLEeE---k~~i~~dikdVyaEA----K~~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLEEE---KKAISDDIKDVYAEA----KGNGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHH----HhCCCCHHHHHHHHHH
Confidence 4555666666654 334455555544444 4459999999999876
No 132
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=67.11 E-value=1.1e+02 Score=29.23 Aligned_cols=79 Identities=16% Similarity=0.284 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH------HHHhH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 200 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~------~V~~L 200 (277)
.+++.+|+..|.-+...+..+..++.++++..-..|.. +..+.+.|...+..=..+.++|..++. ++..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~----IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKS----IRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 67888999999999999999999999888877777765 455556677777777777788877764 45667
Q ss_pred HHHHHHHhh
Q 023768 201 ESKLIEIEG 209 (277)
Q Consensus 201 e~Ki~~ie~ 209 (277)
|..|.+.|.
T Consensus 171 eqELvraEa 179 (271)
T PF13805_consen 171 EQELVRAEA 179 (271)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666554
No 133
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=66.95 E-value=98 Score=27.90 Aligned_cols=40 Identities=8% Similarity=0.164 Sum_probs=29.6
Q ss_pred CchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhH
Q 023768 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 116 SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRI 155 (277)
.+-|--.|+.+.+....+-+.+.+....+..+|+...+.-
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 134 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888887765443
No 134
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=66.89 E-value=32 Score=29.01 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh-------HHHHHHHHHHHHHHHHHhhhchh
Q 023768 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRD-------VNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k-------lde~~ei~~~iq~eV~~i~~dv~ 184 (277)
+.+..|++.+...|...|.++.+=.|+.|.. +||..+-...+...+..+++|++
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVs 64 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVS 64 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4677889999999999999998777776654 55554444444444444444443
No 135
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.39 E-value=36 Score=27.32 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=29.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~ 199 (277)
.-|.+-.||++|... - +.|.+|+.+|=.+.+-.|+|++.++..|.-
T Consensus 15 QLrafIerIERlEeE---k----~~i~~dikdvy~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 15 QLRAFIERIERLEEE---K----KTIADDIKDVYAEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 345555666666543 3 344555556666666679999999988764
No 136
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.13 E-value=40 Score=29.73 Aligned_cols=75 Identities=12% Similarity=0.126 Sum_probs=52.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh-HHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~-Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
+...++.++..|.....+...+.+.-.++..|...++.-+..+-..-.+ |+..+..+...-+....+...|-+.+
T Consensus 9 i~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~ 84 (185)
T cd07628 9 IREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYT 84 (185)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666677777777788888888888887777777777 77777777666666666665555543
No 137
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=65.85 E-value=52 Score=38.94 Aligned_cols=84 Identities=8% Similarity=0.139 Sum_probs=52.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhh-------hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDR-------DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~-------klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
..+++++...|+..|+||....+.+-. .+..-.-.......+...+..+++....++..+...+..|+.+|..
T Consensus 804 e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~ 883 (1822)
T KOG4674|consen 804 ESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKS 883 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888888888777665432 3333333344444455556666666666667777777777777776
Q ss_pred HhhhhHHHhHH
Q 023768 207 IEGKQDITTLG 217 (277)
Q Consensus 207 ie~kQd~tn~G 217 (277)
.....-..+.+
T Consensus 884 ~~~~~~~l~~~ 894 (1822)
T KOG4674|consen 884 AKTQLLNLDSK 894 (1822)
T ss_pred hHHHHhhcccc
Confidence 65544444433
No 138
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=65.84 E-value=16 Score=35.88 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=15.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.+.+.++...+......+..+.+.+..||.+.-
T Consensus 157 Ed~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsR 189 (370)
T PF02994_consen 157 EDRIEEIEQAIKELEKRIKKLEDKLDDLENRSR 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333333333333334445555555555555544
No 139
>PRK04325 hypothetical protein; Provisional
Probab=65.67 E-value=29 Score=26.70 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=16.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+..||+.|..|+--|...+...-+.|++-+..
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~ 38 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQT 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666555544444444445444433
No 140
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.54 E-value=1.3e+02 Score=29.18 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHH---HHHHHhHhhhhhhHHHH----HHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tK---khLsqRId~vD~klde~----~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
-.|.+-.+.+.++++.+.+.+...+ ..|...+..+..-.++. .+.-..+++++.+...++...+.++..++.-
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~ 233 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEE 233 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544433322 23333333333322221 1123334444444444444455555555555
Q ss_pred HHhHHHHHHHHhhhh
Q 023768 197 VQTLESKLIEIEGKQ 211 (277)
Q Consensus 197 V~~Le~Ki~~ie~kQ 211 (277)
+..++.+|.....+.
T Consensus 234 l~~l~~~I~~~~~~k 248 (312)
T smart00787 234 LQELESKIEDLTNKK 248 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555444433
No 141
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=65.42 E-value=1.1e+02 Score=28.11 Aligned_cols=91 Identities=11% Similarity=0.212 Sum_probs=58.1
Q ss_pred CchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 116 SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
+++|=.-..++.+ .+..++.+..+.++..+++ +-.+.++.+...++..+.+=+.--++.+.--.-.+.|-.|-+.+|+
T Consensus 102 ~~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fke 179 (202)
T TIGR03513 102 ATLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKE 179 (202)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445455555555 6777788888888888887 6778888888888877665443333232222333445666677777
Q ss_pred HHHhHHHHHHHHh
Q 023768 196 IVQTLESKLIEIE 208 (277)
Q Consensus 196 ~V~~Le~Ki~~ie 208 (277)
=++.|-..|.++.
T Consensus 180 Q~~kLa~NL~sLN 192 (202)
T TIGR03513 180 EMEKMAANLTSLN 192 (202)
T ss_pred HHHHHHHHHHHHH
Confidence 7777767776553
No 142
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=65.39 E-value=87 Score=26.73 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=17.7
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~ 180 (277)
-..||.+..+.|..+++....-++++..++..+-
T Consensus 36 ~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~ 69 (131)
T PF10158_consen 36 YQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLL 69 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666665554444444444444433
No 143
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=65.38 E-value=51 Score=27.58 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHhhhhH
Q 023768 124 RSLSDACNSVARQLEDV 140 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqV 140 (277)
-.+++=.+++...|+..
T Consensus 12 ~el~n~La~Le~slE~~ 28 (107)
T PF09304_consen 12 NELQNRLASLERSLEDE 28 (107)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 144
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=64.98 E-value=69 Score=31.74 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=9.4
Q ss_pred cCccceeeccCCC
Q 023768 14 AGILTSVLAKEGR 26 (277)
Q Consensus 14 AG~~GSvl~k~gk 26 (277)
+|++..|++++|.
T Consensus 67 ~G~v~~i~V~eG~ 79 (457)
T TIGR01000 67 NNAIKENYLKENK 79 (457)
T ss_pred CcEEEEEEcCCCC
Confidence 4777777788775
No 145
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=64.94 E-value=4.9 Score=32.31 Aligned_cols=16 Identities=44% Similarity=0.925 Sum_probs=11.5
Q ss_pred HhhhhheeeEEecccC
Q 023768 99 VIVAVGYGYVWWKGWK 114 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s 114 (277)
++.++=++|.|||-|+
T Consensus 12 ~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 12 AVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555567899999773
No 146
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=64.90 E-value=1.1e+02 Score=27.95 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 023768 61 LLAEVSSV 68 (277)
Q Consensus 61 l~aQV~~L 68 (277)
|++++..+
T Consensus 135 ll~~~~~l 142 (291)
T TIGR00996 135 LLGSLTRL 142 (291)
T ss_pred HHHHHHHH
Confidence 44444433
No 147
>PRK00736 hypothetical protein; Provisional
Probab=64.74 E-value=29 Score=26.26 Aligned_cols=31 Identities=6% Similarity=0.109 Sum_probs=15.6
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
.+||+.|..|+--|...+...-+.|.+-+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~ 34 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKT 34 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666655555544444444444444333
No 148
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=64.55 E-value=1.4e+02 Score=30.85 Aligned_cols=62 Identities=18% Similarity=0.249 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchh
Q 023768 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTEL 236 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~ 236 (277)
..+.++++.++-|+..+...+..+...|..|..+...+-..-.. +-.+.+|.... -+..|+.
T Consensus 454 ~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L----~E~~iQYaNRY-R~~~~~v 515 (560)
T PF06160_consen 454 EELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATL----AEQLIQYANRY-RSDNPEV 515 (560)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcc-cCCCHHH
Confidence 33334444444444444444444444444444444433322222 24455565443 3344444
No 149
>PRK02224 chromosome segregation protein; Provisional
Probab=64.41 E-value=1.3e+02 Score=31.96 Aligned_cols=16 Identities=6% Similarity=0.372 Sum_probs=8.9
Q ss_pred ccceeeccCCCccchh
Q 023768 16 ILTSVLAKEGRLSSVS 31 (277)
Q Consensus 16 ~~GSvl~k~gkL~d~~ 31 (277)
|..+|++.-|.+..|+
T Consensus 129 f~~~~~i~Qge~~~~l 144 (880)
T PRK02224 129 FVNCAYVRQGEVNKLI 144 (880)
T ss_pred hcceeEeeccChHHHH
Confidence 4555556666555554
No 150
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.34 E-value=69 Score=25.25 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=51.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (277)
++.+..|+.+..+.+...|-+|.++++.=..+..++...+...+.|+..=..+..-|..-..-+..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888999999999999988888889988888888887776665555444444433
No 151
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=64.24 E-value=62 Score=29.67 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.....|+..|++||+.|++-|.+||.=+.
T Consensus 156 ~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 156 SKSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999999999999999997654
No 152
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=64.07 E-value=75 Score=33.17 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ 166 (277)
.+..++...+..-|+.=-..+...=+.|+.+|.+|-+++|-+.
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qE 378 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQE 378 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4556677777777766556666666888999999988887763
No 153
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=64.06 E-value=31 Score=34.28 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhc
Q 023768 61 LLAEVSSVQQELSH 74 (277)
Q Consensus 61 l~aQV~~L~~El~~ 74 (277)
|..+..+|.+++..
T Consensus 232 L~~~ltrL~~~~~~ 245 (370)
T PLN03094 232 LVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHhhh
Confidence 66666666666544
No 154
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=63.90 E-value=30 Score=27.77 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=44.3
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
+.|.+-.=++.+...++.+.+....+-+.|..+...|+.-.++-+-+..++.+-+..+.+..
T Consensus 34 v~~~~~~f~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~ 95 (113)
T PF02520_consen 34 VQDQYNEFKAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQY 95 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHC
Confidence 56666666677777777777777777788888888888888877777777655555555443
No 155
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=63.89 E-value=1.1e+02 Score=32.50 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=71.3
Q ss_pred eEEecccCCC---chHHHhhhhHHH----HHHHHHHhh---hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 107 YVWWKGWKLP---DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 107 YmwWKG~s~S---DlM~VTkr~m~~----Av~sv~kqL---eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
|-|--|-..+ |+|+.--..|+. +-.++++-. +...+.+...-.||.|.+|--|..++++..+...++.++
T Consensus 372 ~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 372 KRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred hhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454454444 445444445553 333444444 477888888899999999999999999988888888877
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
-.=.+-++.-+.+.+.++.-...+-.-....+..+..+..-..-||.
T Consensus 452 ~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 452 LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555555555555544444444333333334444444455554
No 156
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.68 E-value=37 Score=28.47 Aligned_cols=36 Identities=11% Similarity=0.207 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~ 174 (277)
++...|..+|.+|.+-=+.|.+..++..++-..+.+
T Consensus 29 ~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~ 64 (128)
T PF06295_consen 29 KLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ 64 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555545555555554444433333
No 157
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=63.60 E-value=1.2e+02 Score=27.92 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=25.2
Q ss_pred HhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~----eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
|.-++.++++-...+..+++ |.-..+.++++...|...++.+..
T Consensus 96 i~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~ 143 (223)
T cd07605 96 ILPLEKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQ 143 (223)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56666666655444444443 455555666666666666665533
No 158
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=63.60 E-value=33 Score=33.05 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+.++..+...|+++-.....+=.++++||++-..+++...+=+...|.+|..+++-
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34666777778888888888888888888887777777666666666666666553
No 159
>PLN02320 seryl-tRNA synthetase
Probab=63.45 E-value=62 Score=33.47 Aligned_cols=96 Identities=10% Similarity=0.196 Sum_probs=53.7
Q ss_pred ecccCCCchHHHhhhhHHHHHHHHHHhhhhH-HHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 023768 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDV-YSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (277)
Q Consensus 110 WKG~s~SDlM~VTkr~m~~Av~sv~kqLeqV-s~sL~---~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~ 185 (277)
||-. =|+=|. |.|-....+++.+---.+ -+.|. ..+|.+..+++. -..+.++++++|... .-..+.+.
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~---lr~ern~~sk~i~~~--~~~~~~~~ 134 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVLELYENMLALQKEVER---LRAERNAVANKMKGK--LEPSERQA 134 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhh--hCCCCHHH
Confidence 6643 455554 556666666655432111 23333 334445555544 445556678888762 22345666
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+..+++.|.+.+..||.++..++.+.+.
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777777766665443
No 160
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=63.43 E-value=73 Score=31.65 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=52.0
Q ss_pred hhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhH---HHHHHHHHHHHHHH
Q 023768 100 IVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV---NKIVEISQATQEEV 176 (277)
Q Consensus 100 iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kl---de~~ei~~~iq~eV 176 (277)
.+++|-|+ +---..+|=|+.--.++.||-..++.--.+|++.....+..+.+.++++++-. .+..+..+.+++.+
T Consensus 74 ~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PF04906_consen 74 CAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQA 151 (406)
T ss_pred HHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 46666543 34455788888888888888777775556666665555555666655555544 23444455555555
Q ss_pred HHhhhchhhhh
Q 023768 177 TILRGRSKLIG 187 (277)
Q Consensus 177 ~~i~~dv~~i~ 187 (277)
+.+-..+..|.
T Consensus 152 ~~v~~~l~~l~ 162 (406)
T PF04906_consen 152 ENVVQQLDELP 162 (406)
T ss_pred HHHHHHHhcCc
Confidence 55555554443
No 161
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=63.22 E-value=71 Score=24.95 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
.+|.++|..+++.+.+-+++-+..++...+-++.+++-- .....+++-+..=+..+..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~----~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTN----DEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999998888777655555544322 222334555555555555554
No 162
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.17 E-value=30 Score=31.90 Aligned_cols=30 Identities=30% Similarity=0.406 Sum_probs=26.2
Q ss_pred hchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 181 GRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 181 ~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
..+..|-+||+.+++.+..||.|++++|.|
T Consensus 172 ~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 172 LELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999998876
No 163
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.04 E-value=65 Score=38.49 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=58.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
.-+-..+.+.-+.+..+||.+.+|++.....++....-...+.+--..++.+++....|++..+.++..||.|+...
T Consensus 1364 ~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f 1440 (1930)
T KOG0161|consen 1364 KKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRF 1440 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555788889999999999988888887777777766677777888888888888888888888777653
No 164
>PRK10698 phage shock protein PspA; Provisional
Probab=63.02 E-value=83 Score=28.72 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhHHH
Q 023768 189 EFQSVRDIVQTLESKLIEIEGKQDIT 214 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~kQd~t 214 (277)
|...--..+..+|.||.++|..-+..
T Consensus 160 ~~~~a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 160 KLDEAMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhHh
Confidence 34444456666777777777766654
No 165
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.91 E-value=33 Score=25.81 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=8.7
Q ss_pred HHHHhHhhhhhhHHH
Q 023768 150 QLSSKITSVDRDVNK 164 (277)
Q Consensus 150 hLsqRId~vD~klde 164 (277)
++.+|+.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666555
No 166
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.86 E-value=90 Score=32.89 Aligned_cols=103 Identities=12% Similarity=0.177 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
.-|...|.+-...|.++..--...++-|...+..+..+.+....=++.-.+++-+++..+..+-.+++.=++....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688899999999999999999999999999999888776665566666788888888888888888888888888888
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 204 LIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 204 i~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
+..+....++ ..++..+-++|..
T Consensus 477 ~e~~~k~~~R-s~Yt~RIlEIv~N 499 (594)
T PF05667_consen 477 LEKLPKDVNR-SAYTRRILEIVKN 499 (594)
T ss_pred HHhCCCCCCH-HHHHHHHHHHHHh
Confidence 8877766443 3445555555543
No 167
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=62.75 E-value=1.1e+02 Score=28.32 Aligned_cols=94 Identities=18% Similarity=0.285 Sum_probs=63.7
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHH---HHHhHhhhhhhHHHHHHH--HHHHHHHHHHhhhchhhhhhH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEI--SQATQEEVTILRGRSKLIGDE 189 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkh---LsqRId~vD~klde~~ei--~~~iq~eV~~i~~dv~~i~~d 189 (277)
|....---+.++.+.++....++.++.+.+...|+. |.++|..+..+++....- +...+..|...-++.+. .+.
T Consensus 86 LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa 164 (225)
T COG1842 86 LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSA 164 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhh
Confidence 334444557789999999999999999988888875 567888888887765443 34455577777777765 444
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+..++ .+|.|+.++|..=+.
T Consensus 165 ~~~fe----r~e~kiee~ea~a~~ 184 (225)
T COG1842 165 MAAFE----RMEEKIEEREARAEA 184 (225)
T ss_pred HHHHH----HHHHHHHHHHHHHHH
Confidence 44443 455666665554443
No 168
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=62.71 E-value=43 Score=30.92 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=18.3
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSS 143 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~s 143 (277)
|-|...||.|++++..+++.|..++..
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~ 74 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATS 74 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445566777777777777777766654
No 169
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=62.65 E-value=1.8e+02 Score=29.49 Aligned_cols=67 Identities=9% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh-HHHHHHHHHHHHHHHHHhhhchhh
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-VNKIVEISQATQEEVTILRGRSKL 185 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k-lde~~ei~~~iq~eV~~i~~dv~~ 185 (277)
|=.-|+.|+.-+..+-+.++.+.+.|...|+...+|=-+...+ ++.+..-......++.+++.-+..
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999999998885444433 333333333333444444444433
No 170
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=62.20 E-value=87 Score=25.67 Aligned_cols=26 Identities=8% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSS 153 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsq 153 (277)
+-|.+|...+.++...+...++-..+
T Consensus 6 ~~v~~I~~~i~~i~~~v~~l~~l~~~ 31 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEELQKLHSQ 31 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777666555444433
No 171
>PRK09110 flagellar motor protein MotA; Validated
Probab=62.07 E-value=55 Score=31.19 Aligned_cols=92 Identities=15% Similarity=0.171 Sum_probs=68.6
Q ss_pred hhhhHHhhhhheeeEEecc-----cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 023768 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (277)
Q Consensus 94 ~~~iv~iGavGYgYmwWKG-----~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR---Id~vD~klde~ 165 (277)
.++++++|++.+||++=.| |.++-+|-|.--.+.-+ -++--++.+-..+...++-+..+ -....+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtlga~--lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAALGAF--IVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHHHHH--HHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4667788999999998666 78899999998766544 45667888888888888888643 56667778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhh
Q 023768 166 VEISQATQEE-VTILRGRSKLIG 187 (277)
Q Consensus 166 ~ei~~~iq~e-V~~i~~dv~~i~ 187 (277)
.+++...|++ +-.+..+++++.
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~ 105 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPE 105 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCcc
Confidence 8888888876 445555555554
No 172
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=61.98 E-value=58 Score=31.79 Aligned_cols=15 Identities=13% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+..||..|.++|..|
T Consensus 130 l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 130 LAQQLEELSKQLDSL 144 (388)
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666666666665
No 173
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=61.96 E-value=1.1e+02 Score=34.56 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
.....-++|.++...+..+...+.++++.+..++++..+-.....++..+.+ ..+..+...++..+..++.+|+.++
T Consensus 257 ~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~---~~~~~~~~~~~~~l~~~~~~L~~i~ 333 (1201)
T PF12128_consen 257 QLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELR---DELNKELSALNADLARIKSELDEIE 333 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777888888888888888888888877665555555544443 3345556666666666666666665
Q ss_pred h-hhHHHhHHHHHHHH
Q 023768 209 G-KQDITTLGVKKLCD 223 (277)
Q Consensus 209 ~-kQd~tn~GV~~Lc~ 223 (277)
. +..+-..+|--+.+
T Consensus 334 ~~~~~ye~~~i~~~~~ 349 (1201)
T PF12128_consen 334 QQKKDYEDADIEQLIA 349 (1201)
T ss_pred HHHHHHHHCCHHHHHH
Confidence 5 34555556655544
No 174
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=61.96 E-value=75 Score=28.03 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.4
Q ss_pred HHHHHHhHhhh
Q 023768 148 QRQLSSKITSV 158 (277)
Q Consensus 148 KkhLsqRId~v 158 (277)
|..|.+.|..|
T Consensus 105 ~~~~~~~i~~L 115 (184)
T PF05791_consen 105 KEDLKEIIEDL 115 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 175
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=61.87 E-value=69 Score=24.43 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
+|.+...-|..|++.++.+........+.+..|=...-.-+..-..++..++.-+..|...+++
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777788888888888887777777777665444444444555566666666666666554
No 176
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.59 E-value=2.1e+02 Score=29.86 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 176 V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
..+++.++..+..+++.++..+..++.++.
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~ 459 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIE 459 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 177
>PF05802 EspB: Enterobacterial EspB protein
Probab=61.35 E-value=1.2e+02 Score=29.57 Aligned_cols=68 Identities=16% Similarity=0.148 Sum_probs=56.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 146 ~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
-+-+.+...-+.+++.+++..++-++|-.-.+++.+.++.+.+||...-++...|-..+..-..|-.+
T Consensus 147 Lq~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~k~~~ 214 (317)
T PF05802_consen 147 LQQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQKASR 214 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34577888899999999999999999999999999999999999998888877777666654444433
No 178
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=60.94 E-value=90 Score=29.73 Aligned_cols=73 Identities=21% Similarity=0.152 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHhHh---hhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 139 DVYSSISAAQRQLSSKIT---SVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId---~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
+=+..|....||+.+... .-|..|=+.-|.+-..-+||.+++.|-.++.+.++.|-.--..||.-++.+|.+-
T Consensus 82 kWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 82 KWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888887654 4477888888889999999999999999999999999888888888888877654
No 179
>PLN02678 seryl-tRNA synthetase
Probab=60.90 E-value=82 Score=31.99 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
+..-+|.+.++++.+..+. ++++++|... ..-.++.+.+...++.|...+..||.++..++.+-+
T Consensus 38 ld~~~r~l~~~~e~lr~er---N~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEF---NKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666554 5567777641 222344455555566666666666666665555444
No 180
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=60.52 E-value=1.2e+02 Score=26.59 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=43.8
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh---hchhhhhhHHHHHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR---GRSKLIGDEFQSVRDIV 197 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~---~dv~~i~~dv~~v~~~V 197 (277)
-|.+..+.+...+.+.++.+..-+.+...|-++- +.+++-+.+.++-+|..+. .-+..++.-+..+.+.+
T Consensus 24 ~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~L-------l~K~N~L~eDvq~Kv~tld~vf~aV~dl~~SV~~ln~s~ 96 (139)
T COG4768 24 ITLKKVSKTLDEVAKTLKGLTSQVDGITHETEEL-------LHKTNTLAEDVQGKVATLDPVFDAVKDLGQSVSDLNQSV 96 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666555444 4444444444444443332 22344556666666666
Q ss_pred HhHHHHHH
Q 023768 198 QTLESKLI 205 (277)
Q Consensus 198 ~~Le~Ki~ 205 (277)
+-+-.+..
T Consensus 97 r~~~~~~t 104 (139)
T COG4768 97 RHLATRAT 104 (139)
T ss_pred HHHHHHHh
Confidence 66666665
No 181
>PRK13694 hypothetical protein; Provisional
Probab=60.15 E-value=46 Score=26.72 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=30.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~ 199 (277)
-|.+-.||++|+.. -++|+..|++=-.++++. |+|++.+++.|.-
T Consensus 14 Lr~fIERIERLEeE---kk~i~~dikdVyaEAK~~----GfD~K~~r~ii~l 58 (83)
T PRK13694 14 LRAFIERIERLEEE---KKTISDDIKDVYAEAKGN----GFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc----CCcHHHHHHHHHH
Confidence 34455566666544 455666666666666554 9999999998865
No 182
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=59.89 E-value=56 Score=32.84 Aligned_cols=47 Identities=6% Similarity=0.198 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchh
Q 023768 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTEL 236 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~ 236 (277)
.||..=-..++..+.++..+..-+-++.+ ..+.+=+..+++-+..++
T Consensus 151 ~DV~TAv~lLk~aD~~La~~NdP~l~~~R--~Aia~Dia~Lka~p~VD~ 197 (391)
T COG2959 151 QDVTTAVALLKSADARLAAMNDPSLIAVR--RAIANDIAALKAVPQVDR 197 (391)
T ss_pred cchHHHHHHHHHHHHHHHhccCchHHHHH--HHHHHHHHHHhcCCccCh
Confidence 45555555666666666665554433322 122233444555444444
No 183
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.87 E-value=1.7e+02 Score=28.28 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~----eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
.+.-+.+...+-.|..|-+.+..++++..+....+++ +...++..+.....++...+..+..++..+..++..-+-
T Consensus 164 ~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~ 243 (312)
T smart00787 164 MKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555432 555555555555555555555555555555555554444
Q ss_pred HhHHH
Q 023768 214 TTLGV 218 (277)
Q Consensus 214 tn~GV 218 (277)
.+.-.
T Consensus 244 ~~~~k 248 (312)
T smart00787 244 LTNKK 248 (312)
T ss_pred HHHHH
Confidence 43333
No 184
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=59.81 E-value=1.5e+02 Score=28.19 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=26.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
++|++.-+.|...+.....++..|...+++..+-+..+++||.-+
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666655555556655443
No 185
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.29 E-value=1.5e+02 Score=33.52 Aligned_cols=54 Identities=15% Similarity=0.024 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhhcCCCcchhhhhccccccc--ccccCCCCCCC----CccccCCccccc
Q 023768 215 TLGVKKLCDRARELENGRPTELVQASRYTLSR--TTLELPGITPS----SRVTFSPILEFT 269 (277)
Q Consensus 215 n~GV~~Lc~~~~~~~~~~~~~~~q~~~s~ssr--palE~p~~tps----sr~~s~pp~~~~ 269 (277)
-+-...|-.=+..++ +...++-|-..+++-+ |-.+-|+.+.. |..+|.||-.++
T Consensus 1025 eetmdaLq~di~~lE-sek~elKqrl~~~~~k~q~~s~~~~~~~ist~~sG~~s~~~~~s~ 1084 (1243)
T KOG0971|consen 1025 EETMDALQADIDQLE-SEKAELKQRLNSQSKKTQEGSRGPPPSGISTLVSGIASEEQQRSA 1084 (1243)
T ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHhhhcccccCccccCCCCcceeccccCCCCCcccccc
Confidence 333344544444553 3344555555555444 33333443333 466777776654
No 186
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=59.21 E-value=60 Score=25.23 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
-+||.+--.-|-+-|.|+.+...-.-..+..|||.+....|+.
T Consensus 11 pkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDL 53 (73)
T KOG4117|consen 11 PKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDL 53 (73)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 4799999999999999999999999999999999999988885
No 187
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.05 E-value=1.1e+02 Score=30.92 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 162 lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+.+..++...+.++..+++.........++.++..+..|+.++..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345556666666677777776666777777777777777777666654
No 188
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.90 E-value=92 Score=29.26 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=55.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
+..++|.++.++-....+...+.++..++..|....+--+..+-..=.+|+..+..+....+.++.++..|-++.
T Consensus 56 ~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 56 IGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788888888888888888888888888777666666666655556677777777777777777776666544
No 189
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=58.77 E-value=55 Score=32.26 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
+...++.+.+..+++..-||+ +.+.|-..+..|..--+.+...+..+-+..+.+-..+.++.++++.++.||.
T Consensus 232 M~s~~~nIe~~~~~~~~~Ldk---lh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~ 304 (384)
T KOG0972|consen 232 MNSMHKNIEQKVGNVGPYLDK---LHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVS 304 (384)
T ss_pred HHHHHHHHHHhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 456788888888889888888 4788888888888888889999999999999999999999999999999993
No 190
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.77 E-value=1.6e+02 Score=27.66 Aligned_cols=88 Identities=6% Similarity=0.145 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhH-hhhh------hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI-TSVD------RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRI-d~vD------~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
..|++..+.++..+++.+.+|...++++++.. +.|- +.+....-.-.++|-|+.+.-+.+.. =+..
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~-------rre~ 175 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVAL-------RKEE 175 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 68999999999999999999999999987732 2221 12222222233344444444444322 3344
Q ss_pred HHhHHHHHHHHhhhhHHHhHHH
Q 023768 197 VQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 197 V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
++.||.+++..+...+..|.=+
T Consensus 176 ~~kLe~~ie~~~~~ve~f~~~~ 197 (240)
T cd07667 176 RPKVPTDVEKCQDRVECFNADL 197 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444444
No 191
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.76 E-value=27 Score=27.84 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|+.|.+.|..+++++
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 192
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=58.54 E-value=82 Score=24.17 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHH
Q 023768 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDR 224 (277)
Q Consensus 158 vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~ 224 (277)
+..++.+-.+.+.+.+++-..+...--....-|..++..+..+|..+..+..+.+-...-+..|-++
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666666666666666666666655555555544444433
No 193
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=58.46 E-value=1.5e+02 Score=27.04 Aligned_cols=108 Identities=27% Similarity=0.369 Sum_probs=61.4
Q ss_pred hhHHHHHHHHH--Hhh-hhHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchh---------
Q 023768 124 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSK--------- 184 (277)
Q Consensus 124 r~m~~Av~sv~--kqL-eqVs~sL~~tKkhLsqRId~vD-------~klde~~ei~~~iq~eV~~i~~dv~--------- 184 (277)
|.|-++...++ +.+ +...+.|-.|+.+|.--++... +..|....++..+++.+.++.....
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 45555555543 334 6667777777777766655443 3345555555556665555543222
Q ss_pred -hhhhH-------HHHHHHHHHhHHHHHHH---HhhhhHHHhHHHHHHHHHHHhhcCC
Q 023768 185 -LIGDE-------FQSVRDIVQTLESKLIE---IEGKQDITTLGVKKLCDRARELENG 231 (277)
Q Consensus 185 -~i~~d-------v~~v~~~V~~Le~Ki~~---ie~kQd~tn~GV~~Lc~~~~~~~~~ 231 (277)
.|+.- +..+......++.++-+ -..-||.|-+=|......++.+|..
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~ 150 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEER 150 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 12222 23333333334444443 2458999999999998888877654
No 194
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=58.27 E-value=1.6e+02 Score=27.51 Aligned_cols=66 Identities=14% Similarity=0.160 Sum_probs=33.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
++++.+..++++.-+..+.+||.+.|-.=-+..-+-..-...+++++...-..+.+.|..++.++.
T Consensus 30 ~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~~ 95 (291)
T PF10475_consen 30 LEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSADE 95 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777776654433333333333334444444444444444444444433
No 195
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.81 E-value=90 Score=30.69 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i 186 (277)
...|+++-+...++++.+..-+++|...+..=++.+.++...+.+.
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555433333333344444443333
No 196
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.42 E-value=42 Score=29.59 Aligned_cols=36 Identities=6% Similarity=0.171 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhchhhh-hhHHHHHHHHHHhHHHHHH
Q 023768 170 QATQEEVTILRGRSKLI-GDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i-~~dv~~v~~~V~~Le~Ki~ 205 (277)
..-+..+.++..+..++ ..||...=.....+--++.
T Consensus 58 r~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~ 94 (159)
T PF05384_consen 58 RQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLA 94 (159)
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444321 3344444444444444443
No 197
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.20 E-value=1.3e+02 Score=28.73 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=4.9
Q ss_pred hhhHHHHH
Q 023768 123 RRSLSDAC 130 (277)
Q Consensus 123 kr~m~~Av 130 (277)
|+-+.||.
T Consensus 109 rkEl~nAl 116 (290)
T COG4026 109 RKELKNAL 116 (290)
T ss_pred HHHHHHHH
Confidence 56666664
No 198
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.09 E-value=2.8e+02 Score=29.83 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=18.7
Q ss_pred CCCCCCCccccCCccccccccc
Q 023768 252 PGITPSSRVTFSPILEFTANTY 273 (277)
Q Consensus 252 p~~tpssr~~s~pp~~~~~~~~ 273 (277)
-|.|||+|..|--|.-++||+|
T Consensus 751 gpaT~s~r~Ss~n~~ss~aspf 772 (772)
T KOG0999|consen 751 GPATPSSRLSSFNNNSSTASPF 772 (772)
T ss_pred CCCCCccCccCCCCCcccCCCC
Confidence 4778999999999999999875
No 199
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=57.04 E-value=36 Score=31.15 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=20.5
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 174 ~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+|+-++...+++++.+|+.++.-...|+.+++
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44666666666666777777766666665554
No 200
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=56.95 E-value=5.8 Score=33.95 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=0.0
Q ss_pred ceeeeEccCccceeeccCCCc
Q 023768 7 KLTFLVGAGILTSVLAKEGRL 27 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k~gkL 27 (277)
++..++.||++|+|+.++|.+
T Consensus 96 ~~~~I~vaglaGsIlar~r~~ 116 (158)
T PF09769_consen 96 GLGYIGVAGLAGSILARRRGI 116 (158)
T ss_pred ceeeeehhhhheeeeeccCcc
No 201
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=56.44 E-value=1.3e+02 Score=31.58 Aligned_cols=94 Identities=16% Similarity=0.189 Sum_probs=60.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-------------------HHHhhhc
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-------------------VTILRGR 182 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~e-------------------V~~i~~d 182 (277)
++|-.-.-++.+.+-++.+++.+.. +......|.++|+..|.. .++|+.= .-+.-.|
T Consensus 336 A~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~---~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~ 411 (533)
T COG1283 336 AAREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRL---YEEIKLYLARLSKEGLSEEESRRWAEIIDAAIN 411 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHHh
Confidence 4566666777888888889999988 888888888888888875 3444332 2233344
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHH-HHhhhhHHHhHHHHHHHHHHH
Q 023768 183 SKLIGDEFQSVRDIVQTLESKLI-EIEGKQDITTLGVKKLCDRAR 226 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~~Le~Ki~-~ie~kQd~tn~GV~~Lc~~~~ 226 (277)
+++|+|-++. |...++ .++.+-+++-.|..-||++.+
T Consensus 412 lE~IgDiie~-------l~~~~~kk~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 412 LEHIGDIIER-------LLELADKKIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHHHHH-------HHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4445444443 333333 355667777777777776554
No 202
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=56.39 E-value=30 Score=33.43 Aligned_cols=78 Identities=13% Similarity=0.147 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
+-|..=|..|...+|.|-++|+++.|...+.+++..+-.++++.....++.++.-+..|-..|.. -.+-+.-+|+-..
T Consensus 101 aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~--rdeli~khGlVlv 178 (302)
T PF09738_consen 101 AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ--RDELIEKHGLVLV 178 (302)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCeeeC
Confidence 44556688999999999999999999999999998777777777666666666666666555532 2233344555443
No 203
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.83 E-value=93 Score=27.62 Aligned_cols=71 Identities=18% Similarity=0.112 Sum_probs=38.4
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
+...|+.++.+|.....+...+-+.-.++..|...++.-+..+=..=.+|+..+..+-...+....+...|
T Consensus 19 ~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l 89 (200)
T cd07624 19 MNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVL 89 (200)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666665555443333334444444444444444444333
No 204
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=55.75 E-value=1.5e+02 Score=31.67 Aligned_cols=68 Identities=13% Similarity=0.218 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhHHHHHHHHHHhHHHHHH
Q 023768 138 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 138 eqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~---i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+..-..+..+-+.|...+..|+..+++++..+...++++..++..+.. ++.++...+..+..|+.++.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334445566666777777777777777777777777777666655432 44445555555555544443
No 205
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=55.66 E-value=57 Score=30.96 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~ 169 (277)
++|.....-+..+|+.+...|....+...+....|...+....+..
T Consensus 2 ~~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 2 EQLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666666666666665554433333
No 206
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=55.59 E-value=67 Score=32.40 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=45.1
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhH---HHHHHHHHHhhhhHHHHHHHHHH-HHHHhHhhhhhh--HHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSL---SDACNSVARQLEDVYSSISAAQR-QLSSKITSVDRD--VNKIVEISQAT 172 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m---~~Av~sv~kqLeqVs~sL~~tKk-hLsqRId~vD~k--lde~~ei~~~i 172 (277)
..+++++||. ---.|.|=+.-|+..+ ...++++.+|.+.+.++++.+++ +|++-=+.++.. .-+-..+.+.+
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~~~L~~L~~il~~~~~~~~~~~~~~~~ 170 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVEPQLTNLEDIFDARVNKTDYLQIVQGL 170 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHhCCCcchhhHHHHHHHH
Confidence 3455555553 2334555444444444 77778888888888888877775 333211222222 01223344455
Q ss_pred HHHHHHhhhchhhh
Q 023768 173 QEEVTILRGRSKLI 186 (277)
Q Consensus 173 q~eV~~i~~dv~~i 186 (277)
+..++.+..++..+
T Consensus 171 q~~~~n~~~~~~~~ 184 (418)
T cd07912 171 QQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHhcc
Confidence 55555555554444
No 207
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=55.40 E-value=62 Score=30.81 Aligned_cols=92 Identities=12% Similarity=0.213 Sum_probs=69.4
Q ss_pred hhhhHHhhhhheeeEEecc-----cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 023768 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 165 (277)
Q Consensus 94 ~~~iv~iGavGYgYmwWKG-----~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR---Id~vD~klde~ 165 (277)
.++++++|++-.||+|=.| |.++-+|-|.--.+.-+ -++.-++.+...+...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtlga~--lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAIGAF--IIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4667788888888888555 77888898888766544 46677888888898899888776 44667778888
Q ss_pred HHHHHHHHHH-HHHhhhchhhhh
Q 023768 166 VEISQATQEE-VTILRGRSKLIG 187 (277)
Q Consensus 166 ~ei~~~iq~e-V~~i~~dv~~i~ 187 (277)
.+++...|++ +-.+..+++++.
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~ 105 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPE 105 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCcc
Confidence 8888888887 656666666655
No 208
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=55.40 E-value=21 Score=34.92 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHh
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (277)
.+.+.++++...+..+...+..+...+..|+.+++.+|..-.+.|
T Consensus 148 e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnN 192 (370)
T PF02994_consen 148 ELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNN 192 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE
T ss_pred HHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 344556677777777777777777777777777777777544444
No 209
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.37 E-value=44 Score=25.12 Aligned_cols=41 Identities=10% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHH-------HHhHHHHHHHHhhhhH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDI-------VQTLESKLIEIEGKQD 212 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~-------V~~Le~Ki~~ie~kQd 212 (277)
|++++..+..++.++..+++.++.. +..+..+++.++.++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333 3334444444554444
No 210
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=55.34 E-value=75 Score=27.24 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHh
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
+...|..+..-+..|+.|+..+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555444
No 211
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=55.15 E-value=1.5e+02 Score=26.66 Aligned_cols=104 Identities=11% Similarity=0.135 Sum_probs=63.5
Q ss_pred ecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 023768 110 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (277)
Q Consensus 110 WKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~d 189 (277)
+.+|+.+. ..|.++.+.++..++..+.++..+-.. .+..-+-|.+....+..++.=+ . ++|+.+...+
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vl-k-~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVC-K-KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHH
Confidence 56788888 699999999999999988888875544 3667777778777777777733 3 5555544433
Q ss_pred H--HHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 190 F--QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 190 v--~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
. +.+..+...++.. +|..++..+.++..+++=+...
T Consensus 126 ~~~~~L~~k~~~l~~~---ve~a~~~~e~f~~~~~~E~~rF 163 (201)
T cd07622 126 KAEDALANKKQQGEEA---VKEAKDELNEFVKKALEDVERF 163 (201)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222222222222 3334445555554444333333
No 212
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=55.03 E-value=6 Score=32.09 Aligned_cols=74 Identities=14% Similarity=0.228 Sum_probs=39.8
Q ss_pred ceeeeEccCccceeeccCCCccchhHhhhhHHHHHHHhhhcCCCCCCCcchhhH--HHHHHHHHHHHHhcC--CCceEEE
Q 023768 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV--PRSVIIE 82 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k~gkL~d~~~~l~g~~k~~~k~~k~~d~~~~~~~~~~~--l~aQV~~L~~El~~L--sr~iTvv 82 (277)
||+++.|+|+..|++++. +....... |. .+-..+.-.+..+. ...+.+- +.-||+..-.++++. ..||.++
T Consensus 5 kIllvC~~G~sTSll~~k--m~~~~~~~-gi-~~~V~A~~~~~~~~-~~~~~DviLl~Pqi~~~~~~i~~~~~~~pV~~I 79 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSK--MRAQAEKY-EV-PVIIEAFPETLAGE-KGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVI 79 (106)
T ss_pred EEEEECCCCccHHHHHHH--HHHHHHHC-CC-CEEEEEeecchhhc-cccCCCEEEECHHHHHHHHHHHhhcCCCCEEEE
Confidence 799999999999999854 11111100 00 00000000101000 1122223 445999999999987 4688888
Q ss_pred eCC
Q 023768 83 TSS 85 (277)
Q Consensus 83 n~~ 85 (277)
+.-
T Consensus 80 ~~~ 82 (106)
T PRK10499 80 DSL 82 (106)
T ss_pred ChH
Confidence 753
No 213
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=54.89 E-value=73 Score=22.47 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHh
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (277)
.|...+.+++.=...|+..|+.=..++..||.+++....+...++
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~ 52 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGN 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444333333
No 214
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=54.59 E-value=2.5e+02 Score=28.52 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=16.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH
Q 023768 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA 171 (277)
Q Consensus 133 v~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~ 171 (277)
|+....++.+.=..+=+++...|+..-.+.++..+....
T Consensus 399 VA~EVR~LA~~s~~at~~I~~~i~~~~~~v~~~~~~~~~ 437 (554)
T PRK15041 399 VAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVES 437 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433333333333
No 215
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.55 E-value=85 Score=28.29 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=44.7
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~-~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
|-|--.|+.|++++..+++.+..++..=..+-+-|+.=+..+.+-.++..++. .+-.++...+..-+...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999987766432222122222222222222222221 22344566666666666666666655
Q ss_pred HH
Q 023768 196 IV 197 (277)
Q Consensus 196 ~V 197 (277)
+.
T Consensus 108 ~l 109 (198)
T cd07630 108 ML 109 (198)
T ss_pred HH
Confidence 43
No 216
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=54.52 E-value=1.4e+02 Score=25.46 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq 173 (277)
..|++++..+++..+.+++.....-++.. ..+-+.|++.......++
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~e~L~~y~~~~~s~k 106 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQEL---VKLLEPLKEYLRYCQAVK 106 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 36777777777777777776665444432 233444444444333333
No 217
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=54.35 E-value=18 Score=37.65 Aligned_cols=61 Identities=11% Similarity=0.272 Sum_probs=45.3
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~-------~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~ 181 (277)
|-+++=.+|++.+++++..+.+... ..=.+|++||+++++++|+...=.-.-+.|+-.+-+
T Consensus 364 AD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlle 431 (550)
T PF00509_consen 364 ADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLE 431 (550)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhc
Confidence 5689999999999999988887653 333568899999999999876655555555444433
No 218
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=54.16 E-value=2.1e+02 Score=28.19 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHH--HHHHHHhHhhhh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAA--QRQLSSKITSVD 159 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~t--KkhLsqRId~vD 159 (277)
..|.+||+.++.-|-. ...+..- ++-|..||.+=+
T Consensus 100 ~~Mk~a~~ni~~~lp~-~~~~~~~e~r~~lk~RI~rSE 136 (323)
T PF08537_consen 100 TRMKNACTNINSRLPN-RERKSGREERRLLKDRILRSE 136 (323)
T ss_pred HHHHHHhhhhhhhcCC-CcccccHHHHHHHHHHHHHHH
Confidence 6699999998887766 2222222 235666665433
No 219
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=53.95 E-value=1.4e+02 Score=34.55 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=24.6
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
++++-+..+..|+...++.+..++......|..-.-+++-+.-|-.-++++
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~l 1631 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEEL 1631 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444455555555555555555555555554444444433
No 220
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.57 E-value=80 Score=24.31 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=12.2
Q ss_pred chhhhhhHHHHHHHHHHhHHHHHH
Q 023768 182 RSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 182 dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
...+.+.|=...+..+.+|=+||+
T Consensus 47 en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 47 ENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444555555555555555554
No 221
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=53.57 E-value=4.4 Score=34.18 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
...+.-+..|...+..|..|+..++..++.
T Consensus 55 ~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 55 DDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333344444444555555555555555544
No 222
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=53.52 E-value=1.3e+02 Score=25.14 Aligned_cols=87 Identities=14% Similarity=0.177 Sum_probs=52.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
+..++.+.|+.|-.=| +-.+.=...+..|..++..++..++....-....++++.+....+.....+...++..+..++
T Consensus 29 ~~~~~~~vin~i~~Ll-~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 29 SEDNDVRVINCIYDLL-QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred ccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444433 223344455666667777777777776666666666776666666666666666666666666
Q ss_pred HHHHHHhh
Q 023768 202 SKLIEIEG 209 (277)
Q Consensus 202 ~Ki~~ie~ 209 (277)
.++....+
T Consensus 108 ~~~k~~ke 115 (151)
T PF11559_consen 108 AKLKQEKE 115 (151)
T ss_pred HHHHHHHH
Confidence 66664444
No 223
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=53.45 E-value=1.3e+02 Score=28.35 Aligned_cols=6 Identities=50% Similarity=0.850 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023768 189 EFQSVR 194 (277)
Q Consensus 189 dv~~v~ 194 (277)
|++.++
T Consensus 67 ei~~~r 72 (239)
T COG1579 67 EIQEIR 72 (239)
T ss_pred HHHHHH
Confidence 333333
No 224
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.38 E-value=64 Score=26.60 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR 154 (277)
||++-++++.+.+|+.++++.|...|+++..=
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777777777776666666665543
No 225
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.33 E-value=3.4e+02 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=18.8
Q ss_pred HHHHHHhhhcCCCCCCCcchhhHHHHHHHHHHHHHhcC
Q 023768 38 LKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELSHV 75 (277)
Q Consensus 38 ~k~~~k~~k~~d~~~~~~~~~~~l~aQV~~L~~El~~L 75 (277)
-|+++-++.+...+|. ..++.||-..+.+|+.|=..|
T Consensus 454 rk~Alaqlrqe~~~~~-pp~~~dL~~ELqqLReERdRl 490 (739)
T PF07111_consen 454 RKLALAQLRQEQCPPS-PPSVTDLSLELQQLREERDRL 490 (739)
T ss_pred HHHHHHHHHhccCCCC-CCchhhHHHHHHHHHHHHHHH
Confidence 3555555544332221 124556777777776664444
No 226
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.14 E-value=1.1e+02 Score=31.40 Aligned_cols=91 Identities=13% Similarity=0.281 Sum_probs=58.1
Q ss_pred CCchHHHhhhhHHH----HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768 115 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 115 ~SDlM~VTkr~m~~----Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
.-|......+.|.. .+..+...|++++..|..+...|....+.++-.=++ ...+++....++.-..+.+.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~----L~ele~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPER----LNEIEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHHHhCCCH
Confidence 45566666677644 667778888888888888888888887777533222 2334555555555555555566
Q ss_pred HHHHHHHHhHHHHHHHHhh
Q 023768 191 QSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 191 ~~v~~~V~~Le~Ki~~ie~ 209 (277)
+.+......++.++..++.
T Consensus 325 e~l~~~~~~l~~eL~~l~~ 343 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDD 343 (563)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 6666666666666555444
No 227
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=52.88 E-value=1.7e+02 Score=25.98 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=25.8
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
..+++..++..+......+..++..+..|+.|+..+..+.+
T Consensus 96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666665554
No 228
>PHA01750 hypothetical protein
Probab=52.81 E-value=59 Score=25.38 Aligned_cols=32 Identities=16% Similarity=0.433 Sum_probs=22.1
Q ss_pred chHHHhhhhHHHHHHHHH-HhhhhHHHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 148 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~-kqLeqVs~sL~~tK 148 (277)
.+-|-.|..+.||+..+- +-|+++-..|+++|
T Consensus 23 qlYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 23 QLYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667889999998764 44666666666665
No 229
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=52.33 E-value=97 Score=32.40 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred EecccCCCch--HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 023768 109 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (277)
Q Consensus 109 wWKG~s~SDl--M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~ 170 (277)
.=+|+|.+|+ |-.-|-.|..-.+-|+-+.+.+-.++-.++.....+++.|.+++.+-+-++.
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~ 424 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQ 424 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888885 8899999999999999999999999999999999999999988776554443
No 230
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=51.98 E-value=1.2e+02 Score=23.92 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHH
Q 023768 145 SAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 145 ~~tKkhLsqRId~vD~klde~ 165 (277)
..+++.|..-++.+.+.|++.
T Consensus 38 ~~~~~eL~~~l~~ie~~L~DL 58 (97)
T PF09177_consen 38 KWLKRELRNALQSIEWDLEDL 58 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444
No 231
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=51.85 E-value=1.1e+02 Score=25.67 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 778888888888887
No 232
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=51.77 E-value=1.5e+02 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh---hhhhHHHHHHHHHHhHHHHHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~---~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
-.++..-++.|..+|.-+-.+.++..+-...+.+++.++..+.. .-+.++..++..+..||.++-.
T Consensus 57 ~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T 125 (294)
T COG1340 57 AQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 34566667788888888888888888888888888888888877 4577888888888887766553
No 233
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.74 E-value=1.8e+02 Score=26.15 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=24.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
++++...|..++.|+-+.++-.+.+..+..+....+.+...+++.+++.+...|-+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433344333333344444444444444444444433
No 234
>PF13514 AAA_27: AAA domain
Probab=51.73 E-value=69 Score=35.55 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcc
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPT 234 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~ 234 (277)
+..+......++.+|......=-....+...|-+.++.......|
T Consensus 935 ~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL~~a~~~~r~~~~p 979 (1111)
T PF13514_consen 935 AAELEQEREEAEAELEELAEEWAALRLAAELLEEAIERYREERQP 979 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334444444444444443333333344445555555555444443
No 235
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=51.69 E-value=2e+02 Score=26.56 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=40.1
Q ss_pred cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 023768 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (277)
Q Consensus 113 ~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~ 192 (277)
||||.=--. ...-.|..+-++|+..+..+. .|.+.|++...-.++..|.+.++..+.+.++.+++.++-++..
T Consensus 69 wsfps~a~~---~~ks~~qeLe~~L~~~~qk~~----tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 69 WSFPSEAIC---DRKSVLQELESQLATGSQKKA----TLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred cccchHHHH---HHHHHHHHHHHHHHHhhhhHh----HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578754333 333344555555554443333 2333555555555566666666666666666655666665555
Q ss_pred HHH
Q 023768 193 VRD 195 (277)
Q Consensus 193 v~~ 195 (277)
+++
T Consensus 142 ~~e 144 (203)
T KOG3433|consen 142 IQE 144 (203)
T ss_pred Hhh
Confidence 543
No 236
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=51.47 E-value=1.2e+02 Score=31.17 Aligned_cols=10 Identities=30% Similarity=0.282 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q 023768 61 LLAEVSSVQQ 70 (277)
Q Consensus 61 l~aQV~~L~~ 70 (277)
|.++.++|.+
T Consensus 214 L~~e~~~L~n 223 (563)
T TIGR00634 214 LEAEQQRLSN 223 (563)
T ss_pred HHHHHHHHhC
Confidence 7777777653
No 237
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=51.32 E-value=1.7e+02 Score=25.58 Aligned_cols=83 Identities=13% Similarity=0.297 Sum_probs=41.2
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
-++-+.|-....-.+.++.-++.+-..|...-.+|+..+..+|.+++.. ....-+.+..++ +.++.++..++..
T Consensus 20 nvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l---~~~L~~aln~Lq---~~~rneLtnlnsi 93 (140)
T PF04513_consen 20 NVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTL---LTNLNDALNQLQ---DTLRNELTNLNSI 93 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3344444444444455555555555555555555555555566665553 444555554444 2334444444444
Q ss_pred HHhHHHHHH
Q 023768 197 VQTLESKLI 205 (277)
Q Consensus 197 V~~Le~Ki~ 205 (277)
+..|-..+-
T Consensus 94 l~nL~ssvT 102 (140)
T PF04513_consen 94 LNNLTSSVT 102 (140)
T ss_pred HHHHHHHHh
Confidence 444444433
No 238
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=51.31 E-value=2.5e+02 Score=27.75 Aligned_cols=67 Identities=10% Similarity=0.207 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH--------------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLS--------------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLs--------------qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~ 192 (277)
.+..+.+.+.+.++.+.|..+.+... ..|..|-.++.+.++-++.++.-|.++=.|+++....=.+
T Consensus 24 d~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrN 103 (383)
T PF04100_consen 24 DELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRN 103 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665544332 3344444445555555555555555555555554444333
Q ss_pred H
Q 023768 193 V 193 (277)
Q Consensus 193 v 193 (277)
|
T Consensus 104 L 104 (383)
T PF04100_consen 104 L 104 (383)
T ss_pred H
Confidence 3
No 239
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=51.17 E-value=83 Score=29.21 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=58.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH-----H
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----E 206 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~-----~ 206 (277)
++-+|++..-+.=++.+.++..-.+.++.+..+.+..-+.+-..-+-+-.....-+.|+..+.++-.+|-.... +
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 56666666666666666666666665555554443333333222222222233345556666666666654433 3
Q ss_pred HhhhhHHHhHHHHHHHHHHHhhcCC
Q 023768 207 IEGKQDITTLGVKKLCDRARELENG 231 (277)
Q Consensus 207 ie~kQd~tn~GV~~Lc~~~~~~~~~ 231 (277)
..++=.+..+++-+|..|+..++-+
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~ 110 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETG 110 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhc
Confidence 4556678889999999999888777
No 240
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=51.04 E-value=45 Score=32.54 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=39.1
Q ss_pred hHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 023768 97 IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (277)
Q Consensus 97 iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLe-qVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~e 175 (277)
++++|+.||.|.++-...+. .+-..++.-.+....+++ +....+....+.....+..+..+++....-...+++.
T Consensus 40 ~~alg~~~~~~~~~q~~~~~----~~~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~ 115 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQQLQ----QQLQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQ 115 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999988643211 111223333333333333 3444444444455555555555555444444444444
Q ss_pred HHHh
Q 023768 176 VTIL 179 (277)
Q Consensus 176 V~~i 179 (277)
+..+
T Consensus 116 ~~~l 119 (372)
T PF04375_consen 116 LAAL 119 (372)
T ss_pred HHHH
Confidence 4433
No 241
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=51.03 E-value=3.6e+02 Score=29.35 Aligned_cols=101 Identities=10% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
.+-+..+...+..........+..+..+++.+..++.......+.-++.+ ..+..|++.+...+..-.+++..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444444444455555666666667777777777666544444444444 44444555566555555555554
Q ss_pred HhhhhHHHhHHHHHHHHHHHhhcCCCcch
Q 023768 207 IEGKQDITTLGVKKLCDRARELENGRPTE 235 (277)
Q Consensus 207 ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~ 235 (277)
..+-=..--+.+.-|+.++ ++-|+-.|.
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPn 472 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPN 472 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCc
Confidence 4333333334444444444 333443333
No 242
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=51.01 E-value=1.6e+02 Score=25.35 Aligned_cols=96 Identities=11% Similarity=0.165 Sum_probs=58.8
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHHHHHh-----hhchhhh
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEVTIL-----RGRSKLI 186 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~---ei~~~iq~eV~~i-----~~dv~~i 186 (277)
+.|+|.=.-++..+-++.+...|++++..=..++.....--+.+...+.... .+-.++++++... ..-+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5678888888888888888888888888777777666665555555543311 3333334433222 2333334
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
-.-|..|+.+++....||.++|..
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666543
No 243
>PLN03184 chloroplast Hsp70; Provisional
Probab=51.01 E-value=1.5e+02 Score=31.35 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHH
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVN 163 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~kld 163 (277)
........+|.+|..-|..+.++++
T Consensus 559 ~~~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 559 KEKRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344455566666666666666664
No 244
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=50.91 E-value=2.3e+02 Score=29.88 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
..+.+...+++.+.....-++.-++.+..|..-+..+-..+|+|..=.
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeL 327 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAEL 327 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666677777777777777777777766666664433
No 245
>PRK04098 sec-independent translocase; Provisional
Probab=50.75 E-value=1.7e+02 Score=25.99 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~ 181 (277)
.-|-.+...+++-+..+-..+..+|.++.+-+.. ++-.++....-+.+.+.+..++.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~-~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEINI-EEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466667778888888888888888888876642 22222223334444444544544
No 246
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=50.67 E-value=2.3e+02 Score=27.05 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 143 SISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~k----lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+|.....++.+.|+.+..+ .=+..+....+.+++..+...+..+..++..+.........+-..+..
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISE 88 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333 333345555555555555555555665555555555555544444333
No 247
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.56 E-value=2.2e+02 Score=26.72 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
++|-++....+.+..-+.|=+.+..-|+.+|.|+..-
T Consensus 160 ~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 160 QIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666677666643
No 248
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=50.30 E-value=91 Score=29.60 Aligned_cols=16 Identities=6% Similarity=0.194 Sum_probs=7.3
Q ss_pred hhhhhhHHHHHHHHHH
Q 023768 183 SKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~ 198 (277)
+.++..++..|..+..
T Consensus 50 ~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 50 IQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 249
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=50.24 E-value=13 Score=34.86 Aligned_cols=72 Identities=21% Similarity=0.258 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhh-hHHhhhhheeeEE-ecccC--CCchHHHhhhhHHHHHHHHHH
Q 023768 63 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 135 (277)
Q Consensus 63 aQV~~L~~El~~L-sr~iTvvn~~~sg~g~~~~~~-iv~iGavGYgYmw-WKG~s--~SDlM~VTkr~m~~Av~sv~k 135 (277)
+--++|+++|++. ...+.|+-+++-|+--+ .+. -+++|+.|.-++| |.|-+ |..-+.+|.+..+|-.++.+.
T Consensus 126 ~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R-~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 126 ASAEKIRRGLRELTGVDVGVIITDTNGRPFR-EGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCccc-cCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 4468899999998 77888887774443212 222 3589999999998 77764 334568899888887766543
No 250
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=50.23 E-value=1.3e+02 Score=31.47 Aligned_cols=82 Identities=15% Similarity=0.342 Sum_probs=58.2
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
+.|..+-..-..+..++.+.++.|...++.+...|...-+++....+=+..+.+++..+ ...+.+...+.+.=..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 67888888889999999999999999999999888877777666544444455555554 44555555565555555
Q ss_pred HHHHHH
Q 023768 201 ESKLIE 206 (277)
Q Consensus 201 e~Ki~~ 206 (277)
..+|..
T Consensus 207 v~eLs~ 212 (552)
T COG1256 207 VDELSQ 212 (552)
T ss_pred HHHHHh
Confidence 555554
No 251
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.15 E-value=65 Score=31.00 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLS 152 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLs 152 (277)
+.++++.....|+...+.|...+.+|.
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~ 245 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELA 245 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556666666666555554443
No 252
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.09 E-value=51 Score=28.03 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=32.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 222 (277)
+=.++++.+.+|.--.+.++-.|-+||..=-.-+..+++|+++-.-...+==+|+..+... .|+..+|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 3344444444454444555555555554444444445555554444444333444433322 5666666
No 253
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=49.98 E-value=27 Score=28.84 Aligned_cols=44 Identities=7% Similarity=0.280 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 168 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei 168 (277)
++.+++..+..-|.++...+..++..+..+.+.+.+++++..++
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKEL 109 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577888899999999999999999999999999888884433
No 254
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.88 E-value=3.2e+02 Score=31.16 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+..++..|..+|..|
T Consensus 797 ~~~ei~~l~~qie~l 811 (1311)
T TIGR00606 797 FQMELKDVERKIAQQ 811 (1311)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555555
No 255
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.80 E-value=93 Score=30.41 Aligned_cols=70 Identities=16% Similarity=0.248 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH----HHHHHHHHhhcCC
Q 023768 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV----KKLCDRARELENG 231 (277)
Q Consensus 162 lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV----~~Lc~~~~~~~~~ 231 (277)
+|++.+-+++=-+.+..|...++++|+.+..|-.+|..=|.-+.+|..+.+-+-.-| ..|.+|.+.+...
T Consensus 215 l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN 288 (311)
T KOG0812|consen 215 LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN 288 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence 334444455555567788889999999999999999999999999999988776655 5566666665443
No 256
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=49.60 E-value=3.8e+02 Score=29.19 Aligned_cols=97 Identities=10% Similarity=0.082 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
..+.+.|..+.++++-+-....+..+...++.....+++-+...+.+.-.....++...+-.+..++..+|.-+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999988888888888888888888899988888999999999999988888
Q ss_pred HHHHhhhhHHHhHHHHH
Q 023768 204 LIEIEGKQDITTLGVKK 220 (277)
Q Consensus 204 i~~ie~kQd~tn~GV~~ 220 (277)
+++....=+-.|.-+..
T Consensus 195 ~~~~~~ql~~~~q~~~~ 211 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQE 211 (716)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88766555555554433
No 257
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.59 E-value=2.4e+02 Score=28.23 Aligned_cols=68 Identities=4% Similarity=0.084 Sum_probs=33.2
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~ 185 (277)
+++++-+.-|.+.-+-+ ..|..-++.|..-++||..-++.++-++-+.++-+.-..+.+.|..+|.++
T Consensus 218 klR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 218 KLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34444444444333222 234445555555555555555555555555555555555555555554443
No 258
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=49.52 E-value=2e+02 Score=25.92 Aligned_cols=77 Identities=10% Similarity=0.161 Sum_probs=38.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHH
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 226 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq---~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~ 226 (277)
+|..||..+=.-.+++..+.+..+ .++.+......+....+..++.+|..|......+..+......-|..|=-++.
T Consensus 90 ~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 90 FLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666555555444443333 23433333344455555566666665555544444455555555555433333
No 259
>PHA00276 phage lambda Rz-like lysis protein
Probab=49.38 E-value=69 Score=28.11 Aligned_cols=37 Identities=19% Similarity=0.297 Sum_probs=25.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 023768 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (277)
Q Consensus 156 d~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~ 192 (277)
.....++..+.++....++|+..++.....+..|+..
T Consensus 45 ~a~~~~QqaVaal~~~yqkEladaK~~~DrLiadlRs 81 (144)
T PHA00276 45 EATADTQAAINAVSKEYQEDLAALEGSTDRVIADLRS 81 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 3333456677777888888888777776666666543
No 260
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.99 E-value=1.4e+02 Score=28.66 Aligned_cols=66 Identities=11% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
.+...+.+|.+.|..+....++..+--...-++.+..+.++.++.++.+++...+.-...+++++.
T Consensus 68 ~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554444455555666666666666666666666666665555543
No 261
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=48.90 E-value=1.9e+02 Score=31.27 Aligned_cols=38 Identities=18% Similarity=0.381 Sum_probs=23.8
Q ss_pred hHHHhhhhHHHHHH----HHHHhhhhHHHHHHHHHHHHHHhH
Q 023768 118 MMFATRRSLSDACN----SVARQLEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 118 lM~VTkr~m~~Av~----sv~kqLeqVs~sL~~tKkhLsqRI 155 (277)
.||+|.+.|...+. .+...++.+..-+..+..|+..-+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~ 200 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLL 200 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 47999888877766 445555555555555555554433
No 262
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.89 E-value=90 Score=32.44 Aligned_cols=66 Identities=18% Similarity=0.205 Sum_probs=44.6
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 214 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~t 214 (277)
+.|.+|+.-=|...+.-...++.|.++|++++..-...---|...+.+-..|+.||-++--+|...
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeil 402 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEIL 402 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777777777888877775444455556666777777777776666655543
No 263
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=48.88 E-value=6.9 Score=39.84 Aligned_cols=18 Identities=56% Similarity=0.916 Sum_probs=15.2
Q ss_pred eeeEccCccceeec----cCCC
Q 023768 9 TFLVGAGILTSVLA----KEGR 26 (277)
Q Consensus 9 ~iLvGAG~~GSvl~----k~gk 26 (277)
+|+||||++|+-|+ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 79999999998654 7887
No 264
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=48.41 E-value=1.8e+02 Score=28.07 Aligned_cols=40 Identities=20% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~ 169 (277)
++.+...++.+..-....+.-|...-..+|....++..+-
T Consensus 68 ~~~~~~~~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R 107 (356)
T cd09237 68 SSSVDSQLELLRPQSASWVNEIDSSYNDLDEEMKEIEKMR 107 (356)
T ss_pred CCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555544433
No 265
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=48.41 E-value=1.2e+02 Score=23.14 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=24.9
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
++++.+.+..++.-+.+-|+.+=+.-|. .+.+.++..++..+...|...-..++..
T Consensus 5 l~~i~~~v~~v~~im~~Ni~~ll~Rge~----L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 5 LEQIQEQVEEVKNIMRENIDKLLERGEK----LEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444555555555554444444333322 2222333444444445555555555443
No 266
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=48.18 E-value=46 Score=30.20 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-HHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD-EFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~-dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+|.+.+.|.-++.|+.. +++.++-..||+++..+..|+..-+. -..--+..|.-||..+++.+..-.-
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~~~~~~i~~e~v~~LE~~id~y~~~l~~ 106 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPEEKPLRITEEDVKRLEKRIDAYNAELPP 106 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCCccccccCHHHHHHHHHHHHHHHhcCCC
Confidence 56677777777766654 67778889999999999999987761 1224466777788888776665443
No 267
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=48.14 E-value=42 Score=30.02 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=8.0
Q ss_pred HHHHHHhHHHHHHHHhhhh
Q 023768 193 VRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 193 v~~~V~~Le~Ki~~ie~kQ 211 (277)
++..|..++.++.+|++++
T Consensus 140 i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 140 IEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 268
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=47.94 E-value=2.4e+02 Score=26.36 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHH----
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRD---- 195 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~----eV~~i~~dv~~i~~dv~~v~~---- 195 (277)
|-|.+.++.+.||+.++-..+++ ++.+..++-+|-|+. ++.+.+ |-..++..+..|.+++..|++
T Consensus 14 K~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~l---ak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa 86 (219)
T PF06730_consen 14 KFIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDEL---AKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQA 86 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHH---HHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777765 455667777777764 555544 444667788888888887764
Q ss_pred HHHhHHHHHH
Q 023768 196 IVQTLESKLI 205 (277)
Q Consensus 196 ~V~~Le~Ki~ 205 (277)
-|..||.|+.
T Consensus 87 ~v~RlE~KVv 96 (219)
T PF06730_consen 87 EVERLEAKVV 96 (219)
T ss_pred HHHHHHHHhh
Confidence 4666776665
No 269
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=47.91 E-value=1.4e+02 Score=23.54 Aligned_cols=39 Identities=3% Similarity=0.134 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~e 175 (277)
|+.=++.|...-....+|++.+.....+-.++.+.++.|
T Consensus 27 ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~D 65 (88)
T PF10241_consen 27 LNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKD 65 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444433333333333
No 270
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=47.80 E-value=98 Score=28.80 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=20.0
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSS 143 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~s 143 (277)
|-|..-||.|+++...+++.+-.++..
T Consensus 47 e~l~~~rk~la~~~~~~s~sl~~L~~~ 73 (218)
T cd07662 47 DRMTRSHKSAADDYNRIGSSLYTLGTQ 73 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 556677778888888777777777665
No 271
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.77 E-value=1.1e+02 Score=27.11 Aligned_cols=11 Identities=18% Similarity=0.265 Sum_probs=8.0
Q ss_pred HHHHHHHHHhh
Q 023768 218 VKKLCDRAREL 228 (277)
Q Consensus 218 V~~Lc~~~~~~ 228 (277)
+.-|..|++.+
T Consensus 83 ~~eLL~YA~rI 93 (188)
T PF10018_consen 83 YEELLSYAHRI 93 (188)
T ss_pred HHHHHHHHHHH
Confidence 56677788776
No 272
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=46.96 E-value=1.2e+02 Score=27.06 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=41.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH-HHhHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIE 206 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~-V~~Le~Ki~~ 206 (277)
+-.+.+..+|..|...+.+.||.+.. .+.+++...+-++.+...+..+..|+.-|++.-...-+. |..|+..+..
T Consensus 51 er~~~ieNdlg~~~~~~~g~kk~~~~----~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~e 126 (157)
T COG3352 51 ERMTDIENDLGKVKIEIEGQKKQLQD----IKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNE 126 (157)
T ss_pred HHHHHHHhhcccccccccchhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHH
Confidence 44555555666565555555554432 233334444445555555555555555555443332222 4555554444
Q ss_pred HhhhhHHHhHHH
Q 023768 207 IEGKQDITTLGV 218 (277)
Q Consensus 207 ie~kQd~tn~GV 218 (277)
+..=....-.++
T Consensus 127 l~~i~emv~~d~ 138 (157)
T COG3352 127 LKMIVEMVIKDL 138 (157)
T ss_pred HHHHHHHHhccc
Confidence 433333333333
No 273
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=46.74 E-value=2.7e+02 Score=29.93 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=42.4
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH--HHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 154 RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le--~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
-++++...+.+| -..+.+-+.++.+-..+...=++.=+.+|..+. -++..+-.+.+.||.-...||.|++-
T Consensus 37 h~~~~~~e~~~~---ln~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~ 109 (742)
T COG5173 37 HDGNLSAEISKC---LNNILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEF 109 (742)
T ss_pred hhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 334444444444444444444444455555554 46677778999999999999999873
No 274
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=46.73 E-value=1.3e+02 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 187 GDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
++|++....++..+..|+..+|.+..
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~ 74 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLA 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999987653
No 275
>PRK01919 tatB sec-independent translocase; Provisional
Probab=46.72 E-value=1.7e+02 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRI 155 (277)
+.|-.+...+++-+.++-..++..|..+..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888888888888877654
No 276
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=46.60 E-value=92 Score=31.00 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=39.9
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhH-HHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 154 RId~vD~klde~~ei~~~iq~eV~~i~~dv~~---i~~d-v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
+|-.+|.+..++..-....+.+-+.+...+.. -+.| .+.+...+..|-.++..++...+....-+..++.
T Consensus 31 ~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 104 (418)
T TIGR00414 31 KLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLL 104 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444433 1234 6677777777888888888877777766665544
No 277
>PRK10807 paraquat-inducible protein B; Provisional
Probab=46.46 E-value=59 Score=33.64 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhH
Q 023768 141 YSSISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~kl 162 (277)
-+.+.++-+++.+-++.++..+
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l 459 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTL 459 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 278
>PRK04098 sec-independent translocase; Provisional
Probab=46.41 E-value=90 Score=27.74 Aligned_cols=55 Identities=16% Similarity=0.435 Sum_probs=27.7
Q ss_pred CCCchHHHhh-------hhHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhHhhhhh--hHHHHHHH
Q 023768 114 KLPDMMFATR-------RSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEI 168 (277)
Q Consensus 114 s~SDlM~VTk-------r~m~~Av~sv~kq--LeqVs~sL~~tKkhLsqRId~vD~--klde~~ei 168 (277)
+||.+|---. |.++++-+.+... ++.+-+.....|+.|.+-.+.|.. .+|+..++
T Consensus 24 KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~ 89 (158)
T PRK04098 24 KLPQAMVDIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDL 89 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 4666654443 4444444443332 233444445666667666666665 44454333
No 279
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=46.33 E-value=2.3e+02 Score=30.94 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH----------HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQ----------LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkh----------LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
+.+.-..+-.|++-+-++|.+...| |..|++.-...+++..+-+..++++.+.....++.+++-.+.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677777777777766544 445555556666666666666777777777777777776666666
Q ss_pred HHHhHHHHHHHHh
Q 023768 196 IVQTLESKLIEIE 208 (277)
Q Consensus 196 ~V~~Le~Ki~~ie 208 (277)
.|..|-+||+.++
T Consensus 393 ki~~Lq~kie~Le 405 (775)
T PF10174_consen 393 KINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665544
No 280
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=46.30 E-value=1.6e+02 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhHHHhH
Q 023768 189 EFQSVRDIVQTLESKLIEIEGKQDITTL 216 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (277)
.|..++..+..|+.+|..++..+.....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~e 799 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIE 799 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3556677777777777777766655443
No 281
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.28 E-value=87 Score=34.08 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=7.4
Q ss_pred HHHHhHhhhhhhHHH
Q 023768 150 QLSSKITSVDRDVNK 164 (277)
Q Consensus 150 hLsqRId~vD~klde 164 (277)
.+..+|.++|++++.
T Consensus 44 ki~~eir~~d~~l~~ 58 (793)
T KOG2180|consen 44 KIQGEIRRVDKNLLA 58 (793)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 282
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=46.22 E-value=2.2e+02 Score=28.26 Aligned_cols=30 Identities=3% Similarity=0.236 Sum_probs=21.0
Q ss_pred hHHHhhhhHHHHHHHHHHhhhhHHHHHHHH
Q 023768 118 MMFATRRSLSDACNSVARQLEDVYSSISAA 147 (277)
Q Consensus 118 lM~VTkr~m~~Av~sv~kqLeqVs~sL~~t 147 (277)
.+-.-=..|++..+|++.|-|+=..++.-+
T Consensus 200 ~l~~le~ema~lL~sLt~HfDqC~~a~~~~ 229 (412)
T PF04108_consen 200 ELHSLEQEMASLLESLTNHFDQCVTAVRHT 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334788888888888888877766643
No 283
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=46.15 E-value=2.6e+02 Score=26.36 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777665
No 284
>PF13166 AAA_13: AAA domain
Probab=46.08 E-value=3.6e+02 Score=27.92 Aligned_cols=55 Identities=13% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 174 ~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
+++..+...+..+...+..++..+..++.++.+++....-+..++..+=+..+.+
T Consensus 417 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 417 KEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444444455555555666666666666666666655554555554444444444
No 285
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=46.06 E-value=1.1e+02 Score=35.50 Aligned_cols=70 Identities=23% Similarity=0.376 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHH----------HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLS----------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLs----------qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
.+|.++.+++.+||..+.+.|......|+ .-++.|+...+......++.+++...|++ ++|.+.++.+
T Consensus 1228 ~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~--sdi~GA~~~~ 1305 (1758)
T KOG0994|consen 1228 AQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKE--SDILGAFNST 1305 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCchhHHHHH
Confidence 46666777777777666666666555555 33444444444444455555555544444 3444444444
Q ss_pred HH
Q 023768 194 RD 195 (277)
Q Consensus 194 ~~ 195 (277)
++
T Consensus 1306 r~ 1307 (1758)
T KOG0994|consen 1306 RH 1307 (1758)
T ss_pred HH
Confidence 43
No 286
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=46.01 E-value=2.8e+02 Score=26.67 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhc
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~ 229 (277)
....+.++....+++.+...++..+++.|..+-+|+.+++.+--....-+.++--=++.+.
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666667777777777777777777777777777766666666655554454443
No 287
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=45.89 E-value=2.2e+02 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|-.|+++|.+-+..|
T Consensus 16 Le~~Lk~l~~~~~~l 30 (216)
T cd07627 16 LESQLKQLYKSLELV 30 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666665
No 288
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.88 E-value=1.5e+02 Score=23.59 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=36.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 156 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 156 d~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+.+..|+.+..+.+...|.+|.+++++=.....+++.++.-=..|+.+-..+..-|..=..-+
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566677777777777776666666666655555555555555544444433333
No 289
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=45.80 E-value=71 Score=31.07 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=21.8
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 179 LRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 179 i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
++--++.-+.+|++++++|+++-..+..
T Consensus 115 AQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 115 AQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 4444677889999999999998777663
No 290
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.77 E-value=3.9e+02 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=14.7
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVY 141 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs 141 (277)
++++|==+++.+.+-++++.++++.+-
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~ 241 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLK 241 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666655555554433
No 291
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=45.70 E-value=50 Score=24.83 Aligned_cols=45 Identities=11% Similarity=0.344 Sum_probs=24.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
.|.-|+...++.+++.+++...=++++..++..+..+..-++.+.
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666666666666555544444443
No 292
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=45.69 E-value=90 Score=30.68 Aligned_cols=17 Identities=35% Similarity=0.882 Sum_probs=11.5
Q ss_pred cchhhhHHhhhhheeeE
Q 023768 92 KKYGVIVVIVAVGYGYV 108 (277)
Q Consensus 92 ~~~~~iv~iGavGYgYm 108 (277)
+.+|++.++.-+|||-+
T Consensus 166 ~~~Gl~l~i~~~g~Glv 182 (471)
T PF04791_consen 166 NFWGLFLFIILLGYGLV 182 (471)
T ss_pred HHHHHHHHHHHHhccHH
Confidence 34666666778888864
No 293
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.60 E-value=2e+02 Score=29.32 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
|...+|.+..+.+.+-. +.++++++|.+....-..+...+..+++.+...+..+|.+++.++..-+
T Consensus 34 ld~~~r~~~~~~e~l~~---~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~ 99 (429)
T COG0172 34 LDEERRKLLRELEELQA---ERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELD 99 (429)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455555555555554 4556788777432221225666677777777777777777776665443
No 294
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.54 E-value=1.9e+02 Score=28.29 Aligned_cols=15 Identities=13% Similarity=0.173 Sum_probs=7.5
Q ss_pred HHHHHHH---HHHHHhcC
Q 023768 61 LLAEVSS---VQQELSHV 75 (277)
Q Consensus 61 l~aQV~~---L~~El~~L 75 (277)
|.-..++ .++|++..
T Consensus 39 I~eAfk~~gi~~~d~s~~ 56 (300)
T KOG2629|consen 39 IQEAFKRDGIPAQDVSKQ 56 (300)
T ss_pred HHHHHHhcCCcccccccc
Confidence 4444444 55555554
No 295
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=45.53 E-value=1.8e+02 Score=24.32 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=5.0
Q ss_pred HHHHHHhHHHHHHH
Q 023768 193 VRDIVQTLESKLIE 206 (277)
Q Consensus 193 v~~~V~~Le~Ki~~ 206 (277)
.-..+..+..++.+
T Consensus 73 w~~~~~~~~~~LKE 86 (121)
T PF06320_consen 73 WLKLVDSFNDALKE 86 (121)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 296
>PRK04406 hypothetical protein; Provisional
Probab=45.45 E-value=1.1e+02 Score=23.64 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=24.0
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 146 ~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
.-=.+|.-||...++.+|+.+++.-.=+.++..++..+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456666666666666666666666666666665533
No 297
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=45.39 E-value=28 Score=28.99 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=33.8
Q ss_pred cchhhhHHhhhhheeeEEecccCCCchHHHh-hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhh
Q 023768 92 KKYGVIVVIVAVGYGYVWWKGWKLPDMMFAT-RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (277)
Q Consensus 92 ~~~~~iv~iGavGYgYmwWKG~s~SDlM~VT-kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~ 160 (277)
.++..+.++|.+|+-+-.--..---+|=|.+ ||.-++|++.+++ .+|..|++.+..
T Consensus 36 i~sq~~lv~glvgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~~-------------~~lqkRle~l~~ 92 (104)
T PF11460_consen 36 IWSQALLVLGLVGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLTN-------------EELQKRLEELSP 92 (104)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHhH-------------HHHHHHHHhCCH
Confidence 4555566777777554444455555666665 4555666654443 377788877754
No 298
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=45.35 E-value=1.1e+02 Score=32.11 Aligned_cols=69 Identities=23% Similarity=0.241 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.++++..|+.++...-+.|-..|.+.++..+-......|+.++..-++.+...+..+++-|..+|.+=.
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355666666666666677777777777777777777777777777777777777777766666665533
No 299
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.09 E-value=2.8e+02 Score=27.98 Aligned_cols=78 Identities=10% Similarity=0.287 Sum_probs=42.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH--------------hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhh-----
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSS--------------KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD----- 188 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsq--------------RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~----- 188 (277)
+.+..+-+...++-+.+..-|.++.. |.+++++.+++ .++.=++|+..++.++..+..
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd---~~elHq~Ei~~LKqeLa~~EEK~~Yq 295 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLND---LTELHQNEIYNLKQELASMEEKMAYQ 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33455555555566666665554443 44555555444 455556666666666543332
Q ss_pred ---HHHHHHHHHHhHHHHHHHHh
Q 023768 189 ---EFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 189 ---dv~~v~~~V~~Le~Ki~~ie 208 (277)
=.+.|++.++..-.||..||
T Consensus 296 s~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 296 SYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Confidence 23345555666666666666
No 300
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=44.95 E-value=1.7e+02 Score=27.88 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=17.6
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 222 (277)
++...++....+++.++.-+..||....+++++-+....-++.|-
T Consensus 153 eL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 333333333333444444444444444444443333333333333
No 301
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.94 E-value=2.8e+02 Score=26.75 Aligned_cols=94 Identities=9% Similarity=0.140 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
.+.+....-+.+++.+-..+...-+++.++-+.+++.+++....+..+..-+.+.+..+...-.+++.+......-...+
T Consensus 208 ~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~ 287 (359)
T COG1463 208 QLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGL 287 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHhhhhHHHhHHH
Q 023768 205 IEIEGKQDITTLGV 218 (277)
Q Consensus 205 ~~ie~kQd~tn~GV 218 (277)
..+-..+.......
T Consensus 288 ~~ll~~~p~~~~~~ 301 (359)
T COG1463 288 EQLLHGLPTYAANL 301 (359)
T ss_pred HHHHHhcchhhhhh
No 302
>COG1511 Predicted membrane protein [Function unknown]
Probab=44.91 E-value=2.6e+02 Score=30.17 Aligned_cols=19 Identities=16% Similarity=0.471 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHhhhhHHHH
Q 023768 125 SLSDACNSVARQLEDVYSS 143 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~s 143 (277)
.++++.+.+++++-..+.+
T Consensus 148 ~~~~l~~~is~~~t~t~~~ 166 (780)
T COG1511 148 AADKLLNEISKELTETYTK 166 (780)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 303
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=44.88 E-value=2e+02 Score=24.95 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=42.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh----hhhHHHHHHHHHHh----HH
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL----IGDEFQSVRDIVQT----LE 201 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~----i~~dv~~v~~~V~~----Le 201 (277)
.+...+..+.+...|..+|.++..-=+-..+. ...+..-+++|+.+....... .+.|+..|...+.. +.
T Consensus 6 ~e~~~~~~~~L~~~le~a~e~~~~~~elT~eE---l~lv~~ylkRDl~~~a~~~~~~~~~~~~~~~lie~slw~~L~~It 82 (146)
T PF07295_consen 6 EEALEHSEEELQEALEKAKEYLVAAGELTREE---LALVSAYLKRDLEEFARYYEELREWLSPDLQLIEESLWDELSSIT 82 (146)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHH---HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhhh
Confidence 34445555666666666666655443333333 333455555555555444433 23333434433322 11
Q ss_pred --HHHHHHhhhhHHHhHHHHHH
Q 023768 202 --SKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 202 --~Ki~~ie~kQd~tn~GV~~L 221 (277)
.+++-.+-.|++-++|+|.-
T Consensus 83 DkTqvEw~el~~d~~h~g~Y~s 104 (146)
T PF07295_consen 83 DKTQVEWAELAQDLEHHGVYHS 104 (146)
T ss_pred chhHHHHHHHHHHHHhcCCeec
Confidence 23344455677777775443
No 304
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=44.71 E-value=3.8e+02 Score=31.06 Aligned_cols=78 Identities=14% Similarity=0.182 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
|...-+...+.++.+.++|.+.+.++..+-+.+++.-.+ ....+.+..++..++.+.+...+.+......+..|+.
T Consensus 512 L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~----l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrve 587 (1293)
T KOG0996|consen 512 LLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEE----LPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVE 587 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777888888888888888887777666665444 4455556666666666666666666665555555555
Q ss_pred HH
Q 023768 206 EI 207 (277)
Q Consensus 206 ~i 207 (277)
+.
T Consensus 588 E~ 589 (1293)
T KOG0996|consen 588 EA 589 (1293)
T ss_pred HH
Confidence 43
No 305
>PRK12482 flagellar motor protein MotA; Provisional
Probab=44.43 E-value=1.3e+02 Score=28.99 Aligned_cols=92 Identities=15% Similarity=0.208 Sum_probs=66.7
Q ss_pred hhhhHHhhhhheeeEEecc-----cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhh---hhhHHHH
Q 023768 94 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 165 (277)
Q Consensus 94 ~~~iv~iGavGYgYmwWKG-----~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~v---D~klde~ 165 (277)
.++++++|++..||+.=.| |.++-++-|.--.+.-. -++..++.+-..+...++-+...-.+. .+.++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~ga~--lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGIGAM--ILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4566778888888877555 77788888888777554 457788888888888888886655555 4777788
Q ss_pred HHHHHHHHHH-HHHhhhchhhhh
Q 023768 166 VEISQATQEE-VTILRGRSKLIG 187 (277)
Q Consensus 166 ~ei~~~iq~e-V~~i~~dv~~i~ 187 (277)
.++++.-|+| +-.+..+++++.
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~ 105 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPE 105 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCcc
Confidence 8888888876 555555555544
No 306
>PRK10869 recombination and repair protein; Provisional
Probab=44.34 E-value=1.8e+02 Score=30.06 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=49.0
Q ss_pred CCCchHHHhhhhHHHH------HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 114 s~SDlM~VTkr~m~~A------v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
+.-|.+.-..+.|..+ ...+...|++++..|..+...|..-.+.++-.=++ -..+++.+..++.=-.+.|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~----l~~ie~Rl~~l~~L~rKyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNR----LAELEQRLSKQISLARKHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHH----HHHHHHHHHHHHHHHHHhC
Confidence 4455566666776554 34566777777777777777777777665433222 2333444444444444444
Q ss_pred hHHHHHHHHHHhHHHHHHH
Q 023768 188 DEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ 206 (277)
.+++.|-..-..++.++..
T Consensus 317 ~~~~~~~~~~~~l~~eL~~ 335 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQ 335 (553)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4555544444444444444
No 307
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=44.33 E-value=52 Score=27.13 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
|++|-.+++.+..++.+..+=...+++++.++-+.=..++-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788888888888888888888888888888888778888888888888777765
No 308
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=44.31 E-value=1.6e+02 Score=24.94 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=9.8
Q ss_pred hhhhhhHHHHHHHHHHhHHH
Q 023768 183 SKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~~Le~ 202 (277)
.++...|++..+..++.++.
T Consensus 92 ~~~l~~ei~~~~~~~sd~~k 111 (115)
T COG4980 92 IERLKSEIEDLQEAISDETK 111 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555444443
No 309
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=44.05 E-value=2.8e+02 Score=28.78 Aligned_cols=11 Identities=36% Similarity=0.314 Sum_probs=4.8
Q ss_pred CccceeeccCC
Q 023768 15 GILTSVLAKEG 25 (277)
Q Consensus 15 G~~GSvl~k~g 25 (277)
|++|--.+++|
T Consensus 247 g~vgcgrY~eg 257 (493)
T KOG0804|consen 247 GNVGCGRYKEG 257 (493)
T ss_pred cceecccccch
Confidence 44444444443
No 310
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.03 E-value=54 Score=26.45 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHhhhhHHHHHHHHHHhhhhH
Q 023768 119 MFATRRSLSDACNSVARQLEDV 140 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqV 140 (277)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 5654 56677766666666655
No 311
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=3.1e+02 Score=30.08 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=55.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH---------HHHHHHhhhhHH-----
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE---------SKLIEIEGKQDI----- 213 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le---------~Ki~~ie~kQd~----- 213 (277)
-.|.+.-|..|-.++.+.+..+++++.-|.++-+|+++....=++|-..+..|- .++..+-.++.+
T Consensus 74 l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~ 153 (793)
T KOG2180|consen 74 LADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAAS 153 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHh
Confidence 344555566666777777888888888888888888888887777666655543 233333333333
Q ss_pred HhHHHHHHHHHHHhhcCC
Q 023768 214 TTLGVKKLCDRARELENG 231 (277)
Q Consensus 214 tn~GV~~Lc~~~~~~~~~ 231 (277)
-.++|.-||+|.+..++-
T Consensus 154 ~lqai~~ll~~F~~Yk~v 171 (793)
T KOG2180|consen 154 PLQAILQLLNHFIAYKSV 171 (793)
T ss_pred HHHHHHHHHHHHHHhcch
Confidence 346778888887766543
No 312
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=43.93 E-value=3.9e+02 Score=30.13 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=63.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
-+.+++-|-+.-+.+...++.|.--=+....-+-+..+..+-...++-+.......|+.++..-+.++++++.|+..+|.
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34455555555555555555544333333333333334455555567777777778899999999999999999999999
Q ss_pred hhHHHhHHHHHHHHHH
Q 023768 210 KQDITTLGVKKLCDRA 225 (277)
Q Consensus 210 kQd~tn~GV~~Lc~~~ 225 (277)
+-+.+.+-+..|-+--
T Consensus 359 krd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 9999988887665533
No 313
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=43.86 E-value=75 Score=28.81 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=20.9
Q ss_pred hhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Q 023768 94 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 94 ~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId 156 (277)
|+-++++++|++-|+|=| .+-+.=.+-.++...++...=...+..-.+++.++++.+.+..+
T Consensus 36 yGWyil~~~I~ly~l~qk-l~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 36 YGWYILFGCILLYLLWQK-LSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666555533 32222222223444444333344455667777777777665543
No 314
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=43.71 E-value=2.3e+02 Score=27.66 Aligned_cols=47 Identities=32% Similarity=0.413 Sum_probs=33.2
Q ss_pred HHHhhhhHHH----HHHHHHHhhhhHHH----HHHHHHHHHHHhHhhhhhhHHHH
Q 023768 119 MFATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 119 M~VTkr~m~~----Av~sv~kqLeqVs~----sL~~tKkhLsqRId~vD~klde~ 165 (277)
=||.|.+.+= |+..+++=|++|-+ .|...|+.|..||+.+.-.+|=+
T Consensus 14 tfAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLI 68 (302)
T PF05508_consen 14 TFAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLI 68 (302)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 3667776653 45566666666544 68899999999999888766544
No 315
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.66 E-value=1.1e+02 Score=28.51 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
....+.||.++|+.++....+++.+++.-..+=..|++
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999988888888875
No 316
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=43.64 E-value=3.2e+02 Score=26.62 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=52.7
Q ss_pred HHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH------
Q 023768 132 SVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES------ 202 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~------ 202 (277)
-+..||+|+-.....+.. .|+--.++..+|+|.|. .+--..++.+.+|+++.+..-+++|.-|+.||.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~---~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQR---VQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 355666666655544432 33334455556666652 233456788889999999999999999998884
Q ss_pred -----HHHHHhhhhHHHhHHH
Q 023768 203 -----KLIEIEGKQDITTLGV 218 (277)
Q Consensus 203 -----Ki~~ie~kQd~tn~GV 218 (277)
++.+++.--...|+.|
T Consensus 126 rakRati~sleDfeqrLnqAI 146 (333)
T KOG1853|consen 126 RAKRATIYSLEDFEQRLNQAI 146 (333)
T ss_pred HhhhhhhhhHHHHHHHHHHHH
Confidence 4444555455555555
No 317
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=43.57 E-value=2.9e+02 Score=26.09 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+.+++.+|..++..+
T Consensus 93 l~a~~~~l~~~~~~~ 107 (423)
T TIGR01843 93 LEAEVARLRAEADSQ 107 (423)
T ss_pred HHHHHHHHHHHHcCC
Confidence 555555555555443
No 318
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.56 E-value=2.4e+02 Score=25.16 Aligned_cols=118 Identities=8% Similarity=0.156 Sum_probs=57.9
Q ss_pred cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh--HHHHHHHHHHHHHHHHHhhhchhhh-hhH
Q 023768 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD--VNKIVEISQATQEEVTILRGRSKLI-GDE 189 (277)
Q Consensus 113 ~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k--lde~~ei~~~iq~eV~~i~~dv~~i-~~d 189 (277)
|+||.-... .+.+.++.+.+.++.+-..+...+..|..--..-..+ ..+..+--+..+.+...++..+... ..|
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~D 133 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSEND 133 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567766554 4556777777788777777777777766543222222 1111111222333333333333321 123
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchhh
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELV 237 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~~ 237 (277)
-+.|+ .+...+...-..-++-..-|+.|-.|+...-+....++.
T Consensus 134 p~~i~----~~~~~~~~~~~~anrwTDNI~~l~~~~~~k~~~~~~~i~ 177 (188)
T PF03962_consen 134 PEKIE----KLKEEIKIAKEAANRWTDNIFSLKSYLKKKFGMDEEDIR 177 (188)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCHHHHH
Confidence 33333 233333333334455555667777777765555444443
No 319
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=43.33 E-value=42 Score=28.96 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhcC---CCceEEEeCCCCCCCCcchhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHh
Q 023768 60 DLLAEVSSVQQELSHV---PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQ 136 (277)
Q Consensus 60 ~l~aQV~~L~~El~~L---sr~iTvvn~~~sg~g~~~~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kq 136 (277)
+|.+.|...+.|+..| +..|-...-. - -.-. =-||=+|+-.|+=++-|+.=-+|.++.+-++.+...
T Consensus 34 ~lk~dik~~k~~~enledA~~EieL~Ded--d-~~Ip-------~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~ 103 (131)
T KOG1760|consen 34 DLKADIKEAKTEIENLEDASNEIELLDED--D-EDIP-------FKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESE 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhcCcc--c-cccc-------eehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888899999999999 6666666654 1 1111 135788999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHhH
Q 023768 137 LEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRI 155 (277)
++.++..+..-|++|=+|-
T Consensus 104 ~e~I~~~m~~LK~~LYaKF 122 (131)
T KOG1760|consen 104 LESISARMDELKKVLYAKF 122 (131)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999887764
No 320
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=43.29 E-value=1.9e+02 Score=26.10 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeCCCCCCC-Ccchhhh-HHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhh
Q 023768 61 LLAEVSSVQQELSHVPRSVIIETSSGSGTG-AKKYGVI-VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLE 138 (277)
Q Consensus 61 l~aQV~~L~~El~~Lsr~iTvvn~~~sg~g-~~~~~~i-v~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLe 138 (277)
...+|..|.+.|+.|.+.+..+... ... +..++-+ .++..+|=|= -..+|++|...++..-+
T Consensus 17 ~k~~i~~Le~~Lk~l~~~~e~lv~~--r~ela~~~~~f~~s~~~L~~~E--------------~~~~Ls~al~~la~~~~ 80 (224)
T cd07623 17 KQQQIENLDQQLRKLHASVESLVNH--RKELALNTGSFAKSAAMLSNCE--------------EHTSLSRALSQLAEVEE 80 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc--------------cchhHHHHHHHHHHHHH
Confidence 6777888888888884443333322 111 0111111 1333333222 12456777766666666
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH---HHhhhchhhhhhHHHHHHHH------------HHhHHHH
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV---TILRGRSKLIGDEFQSVRDI------------VQTLESK 203 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV---~~i~~dv~~i~~dv~~v~~~------------V~~Le~K 203 (277)
+++..... +-.+=...+.+.|++-..++..+++-. ..+-........++...+.. +..++.-
T Consensus 81 ki~~~~~~---qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~e 157 (224)
T cd07623 81 KIEQLHGE---QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQE 157 (224)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 65555433 333444556666777666666666532 23333334444555555554 3334444
Q ss_pred HHHHhhhhHHHhHHH
Q 023768 204 LIEIEGKQDITTLGV 218 (277)
Q Consensus 204 i~~ie~kQd~tn~GV 218 (277)
+...|.++..++.-.
T Consensus 158 v~~~e~~~~~a~~~f 172 (224)
T cd07623 158 IKEWEAKVDRGQKEF 172 (224)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555444
No 321
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=43.22 E-value=3e+02 Score=26.11 Aligned_cols=90 Identities=10% Similarity=0.139 Sum_probs=51.3
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------Hhhhch
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRS 183 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~t-KkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~dv 183 (277)
.+|...=.+..+.++.+.++++++.+.|-.. +++.-.+|-.+.+.+=.........++-+. +.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 3666777888899999999999999776653 334666666666654433333333222221 222223
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
..+.+++.++-+.+..+..++..
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~ 245 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSS 245 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554
No 322
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.10 E-value=4.3e+02 Score=30.54 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
..+++.++.+++..+.....++..++.....++.++...+.+.
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555544444
No 323
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.02 E-value=1e+02 Score=33.03 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=57.0
Q ss_pred cCCCchHHHhhh--hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhhchh--h
Q 023768 113 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSK--L 185 (277)
Q Consensus 113 ~s~SDlM~VTkr--~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~v---D~klde~~ei~~~iq~eV~~i~~dv~--~ 185 (277)
|.++|.-|...+ ..-+|+..+..+++|+-+-+..+|.-|.+=.+.+ |.-+-+. -..|...|..+.++.. .
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~---l~lIe~~v~~ie~~q~r~d 88 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRF---LDLIEVYVSAIEDLQLRED 88 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHhhcccccccccccc
Confidence 445555555554 2234445555688888888888888776653333 3333222 2223333333322221 1
Q ss_pred hhhHHHHHHHHHHhHHHH----HHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 186 IGDEFQSVRDIVQTLESK----LIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~K----i~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
|..-+..+.+.|..||.+ +..+-...|.+.+.-...-..++.+
T Consensus 89 i~~~~~dl~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l 135 (683)
T PF08580_consen 89 IANSLFDLIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDL 135 (683)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111244455555555553 3345556666666654444455544
No 324
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=42.93 E-value=2.6e+02 Score=25.46 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
.+..+...++.+.+....++..|...-+.+|....+.
T Consensus 23 g~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed 59 (296)
T PF13949_consen 23 GIEKLEESLQELPELSQEVRSILDEIEEMLDEEERED 59 (296)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666655555555554444
No 325
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=42.86 E-value=3.4e+02 Score=26.70 Aligned_cols=11 Identities=9% Similarity=-0.028 Sum_probs=4.8
Q ss_pred HHhhhhHHHHH
Q 023768 120 FATRRSLSDAC 130 (277)
Q Consensus 120 ~VTkr~m~~Av 130 (277)
-.|..|+..|=
T Consensus 204 ~~s~~ni~~a~ 214 (384)
T PF03148_consen 204 EFSNENIQRAE 214 (384)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 326
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.79 E-value=1e+02 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 187 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
..++..+++.+..|=.|++.+..--+-.-..=.+|++||..+
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666676655544333334446889999887
No 327
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.73 E-value=2e+02 Score=28.56 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|..|+..+++++++.
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777777654
No 328
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=42.68 E-value=92 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
-.+++++++++.+++.+...++.+.+.|.
T Consensus 165 l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 165 LEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556666666666666666666666654
No 329
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=42.67 E-value=3.2e+02 Score=26.30 Aligned_cols=75 Identities=7% Similarity=0.163 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+..-++.+.+.+..++..-++..+-....+++..++...-.++-.+...++.-...++...++++..-+.+..=+
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666555555555666666555555555555555555555555555555444444433
No 330
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=42.57 E-value=3.2e+02 Score=28.29 Aligned_cols=15 Identities=33% Similarity=0.620 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHH
Q 023768 138 EDVYSSISAAQRQLS 152 (277)
Q Consensus 138 eqVs~sL~~tKkhLs 152 (277)
+++.+.+...+..+.
T Consensus 39 ~~~~~~~~~~~~~~~ 53 (475)
T PRK10361 39 EEMVAELSAAKQQIT 53 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555544
No 331
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.54 E-value=82 Score=26.49 Aligned_cols=49 Identities=12% Similarity=0.251 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 172 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~i 172 (277)
.-|.+|-+.==|-+.+|-+.++.--.+|+++-+++.--|.+..+|...+
T Consensus 57 EeMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst 105 (120)
T KOG4559|consen 57 EEMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDST 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3466777777777888888888888888888777777666654444443
No 332
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=42.52 E-value=2.8e+02 Score=30.09 Aligned_cols=83 Identities=12% Similarity=0.175 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhL---sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
.+.+-...+.+.+.+...++...|++. .++.+.+-.++++....-.+|+.++.+.+..++.+++-...++.-.+.|-
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~ 614 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLK 614 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777653 34555555666666666666666666666666655555555555555555
Q ss_pred HHHHHH
Q 023768 202 SKLIEI 207 (277)
Q Consensus 202 ~Ki~~i 207 (277)
.|+.++
T Consensus 615 ~kle~~ 620 (698)
T KOG0978|consen 615 RKLERL 620 (698)
T ss_pred HHHHHh
Confidence 555543
No 333
>PRK06743 flagellar motor protein MotP; Reviewed
Probab=42.39 E-value=2.6e+02 Score=26.30 Aligned_cols=92 Identities=12% Similarity=0.183 Sum_probs=63.3
Q ss_pred hhhHHhhhhheeeEEecc--------cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 023768 95 GVIVVIVAVGYGYVWWKG--------WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 95 ~~iv~iGavGYgYmwWKG--------~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ 166 (277)
++++++|++..||++=.| |.++-+|-|---.+.-+ -++-.+..+-..+...++-+..+-....+-++...
T Consensus 2 Giv~~~~~v~~g~~l~Gg~~~~l~~~~~~~~~lIV~GGt~ga~--li~~p~~~i~~~~k~~~~~f~~~~~~~~~~i~~l~ 79 (254)
T PRK06743 2 GIIVGFAIVIAAIMLGGGGIKAFKNFLDVSSILIVIGGTTATI--VVAYRFGEIKKYTKSIFTVLHRREEDLEQLTDLFV 79 (254)
T ss_pred hHHHHHHHHHHHHHHcCCChhHHHHHhCHHHHHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 455667777777766444 66777888877766544 45667777888888888877766667777788888
Q ss_pred HHHHHHHHH-HHHhhhchhhhhh
Q 023768 167 EISQATQEE-VTILRGRSKLIGD 188 (277)
Q Consensus 167 ei~~~iq~e-V~~i~~dv~~i~~ 188 (277)
+++.--|++ +-.+..|++++.+
T Consensus 80 ~la~~aRr~GlLaLE~~~~~~~d 102 (254)
T PRK06743 80 DFSKKSKKHGLLSLEVDGEQVDN 102 (254)
T ss_pred HHHHHHHhcCHHHHHhhccCCcc
Confidence 888877775 5555555555443
No 334
>PHA03395 p10 fibrous body protein; Provisional
Probab=42.35 E-value=94 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.262 Sum_probs=12.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
+.+..-++..-..+..+..|+..|
T Consensus 38 ~~l~~kLdaq~~~Ltti~tkv~~I 61 (87)
T PHA03395 38 TEINEKLDAQSASLDTISSAVDNI 61 (87)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444555555555555555544
No 335
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=42.30 E-value=78 Score=27.63 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
-+..++++-..+++.+|.++++-+ ...+++++-....|+..+...+..++..++-.+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467788888888999999887754 6677778878888888877777777777776653
No 336
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.19 E-value=2.8e+02 Score=26.55 Aligned_cols=75 Identities=12% Similarity=0.241 Sum_probs=43.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
++.|+..=-.+++-|..=-..=..|-..+...+ ++.++-+.++.-+..+...+.++...+.++..--..||.||.
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~r~~-e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIe 200 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALARPL-ELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIE 200 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHcCCc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433322222333333333 445677777777777777777777777777777777777775
No 337
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=42.14 E-value=73 Score=23.70 Aligned_cols=8 Identities=0% Similarity=0.418 Sum_probs=2.9
Q ss_pred hHhhhhhh
Q 023768 154 KITSVDRD 161 (277)
Q Consensus 154 RId~vD~k 161 (277)
++.+++.+
T Consensus 8 ~~~~~~~~ 15 (55)
T PF05377_consen 8 ELPRIESS 15 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 338
>COG5283 Phage-related tail protein [Function unknown]
Probab=42.05 E-value=2.1e+02 Score=32.90 Aligned_cols=89 Identities=13% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLs---qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
|-+++...++--...-+....+|+-|+ .|.+.+-+.+|+++..-+..++++.|+-+-+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333333334444444443 57788888999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhHHH
Q 023768 203 KLIEIEGKQDIT 214 (277)
Q Consensus 203 Ki~~ie~kQd~t 214 (277)
++.++...++.+
T Consensus 107 ~~~sas~q~~~a 118 (1213)
T COG5283 107 KLRSLSGQFGVA 118 (1213)
T ss_pred HHHHHHhhhchh
Confidence 999888888866
No 339
>PHA02414 hypothetical protein
Probab=42.03 E-value=1.1e+02 Score=25.52 Aligned_cols=71 Identities=21% Similarity=0.331 Sum_probs=41.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhc
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 229 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~ 229 (277)
.|-.|++++.+|+.+= +.+ =++|-......|..++++|-.|+..+.-=++||-.--.-+..|-+-+..+.
T Consensus 8 ~Lv~~v~~ledKiQ~G---------elt-~kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~aL~ 77 (111)
T PHA02414 8 NLVSQVETLEDKIQEG---------ELT-DKGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKISALA 77 (111)
T ss_pred HHHHHHHHHHHHHhcC---------ccc-cCCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445666666665431 111 133555566667777777777777777666677665555555555555443
Q ss_pred C
Q 023768 230 N 230 (277)
Q Consensus 230 ~ 230 (277)
.
T Consensus 78 ~ 78 (111)
T PHA02414 78 E 78 (111)
T ss_pred h
Confidence 3
No 340
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=41.57 E-value=2.7e+02 Score=27.25 Aligned_cols=33 Identities=6% Similarity=0.181 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 169 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~ 169 (277)
+.|++.=|...-+.=..||+.+-.+||.-.+|.
T Consensus 29 ikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~Iv 61 (302)
T PF05508_consen 29 IKQCSRFLKKIPDKDRKELEKLQRRLESKIKIV 61 (302)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhcc
Confidence 445555554444333377777777777655544
No 341
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.56 E-value=2.6e+02 Score=28.98 Aligned_cols=52 Identities=21% Similarity=0.369 Sum_probs=27.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
+.|.+|-+++|.++++ .++.+-.++..+.++...+...++..+..|..+++.
T Consensus 90 ~~L~~r~~~id~~i~~------av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 90 ERLQKREQSIDQQIQQ------AVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHhhhhHHHHHHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444332 333333444455555666666666666666666653
No 342
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.50 E-value=2.7e+02 Score=25.20 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=33.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
.+|++.-..+....+++.+.|+.|..+.... +.....++..+...-...-.-.-.++..+..||..|.++.
T Consensus 139 ~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~---Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~ 209 (221)
T PF05700_consen 139 EQLEAMLKRLEKELAKLKKEIEEVNRERKRR---QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLK 209 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666543332 1222233333333333333333344444455554444433
No 343
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=41.33 E-value=5.7e+02 Score=28.84 Aligned_cols=49 Identities=22% Similarity=0.244 Sum_probs=31.3
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchhhh
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 238 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~~q 238 (277)
+..+++.-..|=.++.++.-+=-.+-.++..+-+.++..+..+.|..++
T Consensus 813 ~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~ 861 (984)
T COG4717 813 VAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQ 861 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 3344444444445555555555566667777778888888888887754
No 344
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.24 E-value=7.2 Score=30.80 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=39.1
Q ss_pred ceeeeEccCccceeeccCCCccchhHhhhhHHHHHHHhhhcCCCCCCCcchhhH--HHHHHHHHHHHHhcC----CCceE
Q 023768 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND--LLAEVSSVQQELSHV----PRSVI 80 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k~gkL~d~~~~l~g~~k~~~k~~k~~d~~~~~~~~~~~--l~aQV~~L~~El~~L----sr~iT 80 (277)
||+++.|+|++.|++++ ++-+++.+..=-..+-.-...+.+ .....++- ++-|++..-.++++. .-||.
T Consensus 1 kIl~~Cg~G~sTS~~~~--ki~~~~~~~~~~~~v~~~~~~~~~---~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~ 75 (96)
T cd05564 1 KILLVCSAGMSTSILVK--KMKKAAEKRGIDAEIEAVPESELE---EYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVA 75 (96)
T ss_pred CEEEEcCCCchHHHHHH--HHHHHHHHCCCceEEEEecHHHHH---HhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEE
Confidence 78999999999998776 565555421100000000000000 00111222 566999999999974 45666
Q ss_pred EEeC
Q 023768 81 IETS 84 (277)
Q Consensus 81 vvn~ 84 (277)
++..
T Consensus 76 ~I~~ 79 (96)
T cd05564 76 VIDM 79 (96)
T ss_pred EcCh
Confidence 6554
No 345
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.21 E-value=2.1e+02 Score=32.52 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
-+++|..++.-+-..|+-.+..+++-=..++....| .+.+.++..+++-.++.+..+++.....+..|+.++..++
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~E----l~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ve 752 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELE----LQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVE 752 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555433333333322 2333333444444444444444444444444444444444
Q ss_pred h
Q 023768 209 G 209 (277)
Q Consensus 209 ~ 209 (277)
.
T Consensus 753 d 753 (1141)
T KOG0018|consen 753 D 753 (1141)
T ss_pred H
Confidence 3
No 346
>PRK10698 phage shock protein PspA; Provisional
Probab=41.07 E-value=2.8e+02 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=22.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
..+.+..++..+......+..++..+..|+.|+.....+++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~ 138 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA 138 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555543
No 347
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.74 E-value=1.6e+02 Score=33.79 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
...+....||+.+.|..+.+++++-..-...+.......+.++.+...++..+...-...+.+++.+..+=+....|+
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~ 477 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGI 477 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 334555556666666666666666554444555555555666666666666666666666666665555544444554
No 348
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=40.73 E-value=65 Score=32.84 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH------HHHHhhhchh
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE------EVTILRGRSK 184 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~------eV~~i~~dv~ 184 (277)
..||+..+.+|+|+.-.. ++..||++-...+++..-|-+..++ -|+++++|+.
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n~~~~pe~v~~~q~di~ 175 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQNNEMDPEPVEEFQDDIK 175 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence 678999999999987654 8889999999888887767666665 2555555543
No 349
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=40.63 E-value=2.2e+02 Score=25.50 Aligned_cols=21 Identities=5% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHhhhhH-HHHHHHHHHhhhhH
Q 023768 120 FATRRSL-SDACNSVARQLEDV 140 (277)
Q Consensus 120 ~VTkr~m-~~Av~sv~kqLeqV 140 (277)
|.+++++ ........+-+.+.
T Consensus 78 ~S~~K~Pf~~~~k~~~~ifkeg 99 (163)
T PF03233_consen 78 LSKSKSPFESFFKDLSKIFKEG 99 (163)
T ss_pred cccCCCcHHHHHHHHHHHHHhc
Confidence 3444444 33444444444444
No 350
>PRK04654 sec-independent translocase; Provisional
Probab=40.55 E-value=2.9e+02 Score=25.81 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId 156 (277)
+.|=.+...+++-+.++-..+..+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445666777777777777777777777766544
No 351
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=40.51 E-value=3.3e+02 Score=29.27 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
-..+..++......+....-.+..=..+|+.|+.|+.++...+.
T Consensus 469 ~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 469 KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455567777777888888888888889999999998885444
No 352
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=40.18 E-value=65 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.381 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKI 155 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRI 155 (277)
|+++=++++.+.+|+.+++..+.+.|.++..=+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~ 35 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELL 35 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888887776543
No 353
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.97 E-value=2.8e+02 Score=29.74 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=49.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 222 (277)
|..-|.=-.+.+-=+.+++++...-.-++...+.+.+.|+.+-+.|+.+++++.++|+..-+-...|-
T Consensus 576 i~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~ 643 (741)
T KOG4460|consen 576 ILKQDLVKEEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLL 643 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333344445666677666667778888899999999999999999999999998766665553
No 354
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=39.85 E-value=3e+02 Score=26.19 Aligned_cols=45 Identities=13% Similarity=0.360 Sum_probs=32.3
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
+.|..+-.+-+.++.++.++++.|...++.....|+..-+++...
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l 171 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSL 171 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777778888888888888888888777777665554444443
No 355
>PHA03386 P10 fibrous body protein; Provisional
Probab=39.83 E-value=1.7e+02 Score=24.01 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHh
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
|+.||+.+..+|.-|-..++.++
T Consensus 10 Ir~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 10 ILDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 356
>PRK02119 hypothetical protein; Provisional
Probab=39.75 E-value=1.3e+02 Score=23.00 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=23.8
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
-=.+|.-|+...++.+|+.+++...-++++..++..+.
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~ 47 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456666666667776666666666666666655433
No 357
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=39.51 E-value=2.4e+02 Score=24.02 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
|.+|+.++..|..||.|...+|..
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777788887777653
No 358
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.46 E-value=3.8e+02 Score=28.84 Aligned_cols=86 Identities=12% Similarity=0.267 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
||||.. .+.+++=+..+.+-..=+.+..++++++..+++++-....+..+.+....+...+-...+.++ .
T Consensus 51 RRnLr~---~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~-------~ 120 (655)
T KOG3758|consen 51 RRNLRS---DIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLK-------E 120 (655)
T ss_pred Hhhhhh---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH-------H
Confidence 777654 556677777888888888999999999999999988888888888777777665555555555 4
Q ss_pred HHHHHhhhhHHHhHHH
Q 023768 203 KLIEIEGKQDITTLGV 218 (277)
Q Consensus 203 Ki~~ie~kQd~tn~GV 218 (277)
+-+.+|.+++..|.+.
T Consensus 121 e~~~le~r~kii~~Fl 136 (655)
T KOG3758|consen 121 EAAQLELRKKIINAFL 136 (655)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 359
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=39.43 E-value=2.3e+02 Score=24.84 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=5.7
Q ss_pred HHHHHHHHhHHHHHH
Q 023768 191 QSVRDIVQTLESKLI 205 (277)
Q Consensus 191 ~~v~~~V~~Le~Ki~ 205 (277)
+.+-.=+..+...+.
T Consensus 102 q~l~~E~qk~~k~v~ 116 (155)
T PF07464_consen 102 QSLVQESQKLAKEVS 116 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333334443
No 360
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=39.36 E-value=2e+02 Score=25.24 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.1
Q ss_pred HHhhhhhee-eEEecccCCCch
Q 023768 98 VVIVAVGYG-YVWWKGWKLPDM 118 (277)
Q Consensus 98 v~iGavGYg-YmwWKG~s~SDl 118 (277)
+++|.+||| |.=+|..+=||+
T Consensus 16 a~~~flgYciYFD~KRR~dPdF 37 (148)
T TIGR00985 16 AAAAFLGYAIYFDYKRRNDPDF 37 (148)
T ss_pred HHHHHHHHHHhhhhhhccCHHH
Confidence 357889998 677899988887
No 361
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=39.30 E-value=1.5e+02 Score=23.70 Aligned_cols=9 Identities=0% Similarity=0.180 Sum_probs=3.8
Q ss_pred HHHHhhhch
Q 023768 175 EVTILRGRS 183 (277)
Q Consensus 175 eV~~i~~dv 183 (277)
++++|..|-
T Consensus 69 ~l~~I~~n~ 77 (113)
T PF02520_consen 69 KLSAILDNK 77 (113)
T ss_pred HHHHHHcCc
Confidence 344444443
No 362
>PRK09303 adaptive-response sensory kinase; Validated
Probab=39.14 E-value=75 Score=30.22 Aligned_cols=12 Identities=8% Similarity=0.277 Sum_probs=6.6
Q ss_pred HHHHHHHHHhcC
Q 023768 64 EVSSVQQELSHV 75 (277)
Q Consensus 64 QV~~L~~El~~L 75 (277)
|++++.+-++.+
T Consensus 30 ~~~~~~~~~~~~ 41 (380)
T PRK09303 30 DIQRIIAYLESL 41 (380)
T ss_pred HHHHHHHHHHhC
Confidence 455555555555
No 363
>PHA03332 membrane glycoprotein; Provisional
Probab=39.03 E-value=2.7e+02 Score=31.92 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhchhhhhhHH----HHHHHHHHhHHHH
Q 023768 168 ISQATQEEVTILRGRSKLIGDEF----QSVRDIVQTLESK 203 (277)
Q Consensus 168 i~~~iq~eV~~i~~dv~~i~~dv----~~v~~~V~~Le~K 203 (277)
++..+++.+.++.+-++...++| ..+..-+..|..+
T Consensus 924 isatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 924 ISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443333 3444455555555
No 364
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.62 E-value=1e+02 Score=28.90 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+=.-|.+.+.++-+|...|+..+.++.......+.||..++.|
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999999999888877777777777666665
No 365
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=38.52 E-value=2.1e+02 Score=25.48 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=47.8
Q ss_pred CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhhchhhhhhHHHH
Q 023768 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQS 192 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei-~~~iq~eV~~i~~dv~~i~~dv~~ 192 (277)
+|.|.+-.-|+.++++-+.+. -|+.=...|-..=..+++.+--+-++..++-++ .+.+.++|.+++.-++....|++.
T Consensus 62 ~~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 62 KVKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred cccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 477777778888877777664 244444444444455555566666655555555 555566666666666666655554
Q ss_pred HH
Q 023768 193 VR 194 (277)
Q Consensus 193 v~ 194 (277)
+-
T Consensus 141 l~ 142 (157)
T COG3352 141 LY 142 (157)
T ss_pred hc
Confidence 43
No 366
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=38.51 E-value=96 Score=22.89 Aligned_cols=34 Identities=12% Similarity=0.277 Sum_probs=22.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
-|-+-|+|+.+.....-..+..|||.+..++|+.
T Consensus 7 ~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdL 40 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDL 40 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444566666777777777777777777777764
No 367
>PLN02320 seryl-tRNA synthetase
Probab=38.39 E-value=1.2e+02 Score=31.47 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=5.5
Q ss_pred HHHHHHHHHhHHHHH
Q 023768 190 FQSVRDIVQTLESKL 204 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki 204 (277)
+..++..+..+|.++
T Consensus 146 i~~le~~~~~~~~~l 160 (502)
T PLN02320 146 LVTLEEDLVKLTDEL 160 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 368
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.33 E-value=3.5e+02 Score=26.84 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQ 170 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~ 170 (277)
.+.+.+.+..+.++|+.++..+.......+
T Consensus 167 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 196 (457)
T TIGR01000 167 NEAAEKTKAQLDQQISKTDQKLQDYQALKN 196 (457)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444444333333
No 369
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=37.99 E-value=1.2e+02 Score=27.80 Aligned_cols=18 Identities=22% Similarity=0.173 Sum_probs=10.0
Q ss_pred HhhhhheeeEEecccCCCc
Q 023768 99 VIVAVGYGYVWWKGWKLPD 117 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SD 117 (277)
-+|.-|-+|- =+|-.||.
T Consensus 73 rlG~~~~s~~-~~gTdfS~ 90 (195)
T PF12761_consen 73 RLGRGGKSYK-EKGTDFSA 90 (195)
T ss_pred HhccccCCCC-CCCCCCCC
Confidence 4666555442 35666765
No 370
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.98 E-value=2e+02 Score=24.43 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
+.+...++.|.+.++-.-..+ ...++++..+...++.-...++.++..+..++..+.+-+.+-
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l-------~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQL-------ELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444445555555544333333 334455555555555556667777777777777777665553
No 371
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.97 E-value=94 Score=34.40 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 023768 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (277)
Q Consensus 133 v~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V 197 (277)
=-|||++=-++|+.-++.|++||..+.+++-.+++.+..+.....-....+++....|+..+.+.
T Consensus 438 k~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 438 KKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666677777777777777777777766655555555444333334444444444444443
No 372
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=37.82 E-value=1.3e+02 Score=27.60 Aligned_cols=53 Identities=19% Similarity=0.359 Sum_probs=37.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~v---D~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
++...++|+...+.++|+=++.-|+.+ |+|||.+..++..+.-.+..++.-..
T Consensus 126 s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~ak 181 (190)
T COG5143 126 SIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAK 181 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355668888888888888888888877 66777777777777666655444433
No 373
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=37.75 E-value=1.4e+02 Score=27.79 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=27.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~ 180 (277)
+-.+|.++|+.+....++|..++..|.+.|-+++
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQ 38 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQ 38 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888889888888888776655
No 374
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=37.64 E-value=3.8e+02 Score=25.79 Aligned_cols=8 Identities=50% Similarity=0.617 Sum_probs=3.5
Q ss_pred HHhcC-CCc
Q 023768 71 ELSHV-PRS 78 (277)
Q Consensus 71 El~~L-sr~ 78 (277)
|++.. +.+
T Consensus 77 e~~Sv~ses 85 (269)
T PF05278_consen 77 EMSSVISES 85 (269)
T ss_pred hhhhccccc
Confidence 44443 444
No 375
>PRK01156 chromosome segregation protein; Provisional
Probab=37.60 E-value=4e+02 Score=28.68 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHHHhHh
Q 023768 139 DVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId 156 (277)
+.++.+..+.+.+..++.
T Consensus 166 ~~~~~~~~~~~~~~~ei~ 183 (895)
T PRK01156 166 RNYDKLKDVIDMLRAEIS 183 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 376
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=37.59 E-value=4.9e+02 Score=27.06 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=16.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 133 v~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+...++.+.+......++|.+.++.+...+.+
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 121 (779)
T PRK11091 90 LVAKLEEMRERDLELNVQLKDNIAQLNQEIAE 121 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555444
No 377
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=37.48 E-value=1e+02 Score=23.12 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=6.0
Q ss_pred HHHHHhhhhHHHHHHH
Q 023768 131 NSVARQLEDVYSSISA 146 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~ 146 (277)
+.|....+.+.+.+..
T Consensus 29 ~~l~~~~~~~~~~~~~ 44 (74)
T PF12732_consen 29 EKLKDKAEDLKDKAKD 44 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 378
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=37.33 E-value=4.8e+02 Score=26.81 Aligned_cols=74 Identities=8% Similarity=0.153 Sum_probs=50.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
.+.+-..|++...=....+.+...++..+...+.+++..+..+.+.|.|+.....--+.+...--.--.-+..+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l 440 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKAL 440 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555565555666677788888888888899999999999999998876655555555443333334444
No 379
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=37.23 E-value=1.9e+02 Score=25.06 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH----hhhchhhhhhHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEFQS 192 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~----i~~dv~~i~~dv~~ 192 (277)
++.|.++...+-+.|.+-|+....++.+. ...+++|+.. +++|++.+...++.
T Consensus 2 ~~~l~e~~~~~~~~L~~~le~a~e~~~~~---~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 2 VESLEEALEHSEEELQEALEKAKEYLVAA---GELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hhHHHHHHhcCHHHHHHHHHHHHHHHHHH---hhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888899998888888887665 4455555444 45666666665555
No 380
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=37.20 E-value=28 Score=23.63 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=21.5
Q ss_pred eeEEecccCCCchHHHhhhhHHHH
Q 023768 106 GYVWWKGWKLPDMMFATRRSLSDA 129 (277)
Q Consensus 106 gYmwWKG~s~SDlM~VTkr~m~~A 129 (277)
-++.|+|++-.|-.+++..+|.++
T Consensus 22 y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 22 YLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEECCCCCccCccccHHHhCch
Confidence 478999999999999999998876
No 381
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=37.19 E-value=2.3e+02 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.351 Sum_probs=4.7
Q ss_pred HHHhHhhhhhhH
Q 023768 151 LSSKITSVDRDV 162 (277)
Q Consensus 151 LsqRId~vD~kl 162 (277)
|..+++.+..++
T Consensus 87 l~~~~~~~~~~l 98 (202)
T PF01442_consen 87 LSERAEELKERL 98 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333443343333
No 382
>PRK04863 mukB cell division protein MukB; Provisional
Probab=37.16 E-value=6.2e+02 Score=29.86 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655555
No 383
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=37.12 E-value=36 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.9
Q ss_pred eeEEecccCCCchHHHhhhhHHHH
Q 023768 106 GYVWWKGWKLPDMMFATRRSLSDA 129 (277)
Q Consensus 106 gYmwWKG~s~SDlM~VTkr~m~~A 129 (277)
-|+.|+|++-++-.+++..+|.++
T Consensus 20 ylVkW~g~~~~~~tW~~~~~l~~~ 43 (55)
T smart00298 20 YLVKWKGYSYSEDTWEPEENLLNC 43 (55)
T ss_pred EEEEECCCCCccCceeeHHHHHHH
Confidence 478999999999999999888863
No 384
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.08 E-value=2.6e+02 Score=28.32 Aligned_cols=89 Identities=9% Similarity=0.118 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHH---HHHHHhHhhhhhhHHHHH-HHHH---HHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIV-EISQ---ATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tK---khLsqRId~vD~klde~~-ei~~---~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
-+.++..+.++++++-..++.+. ..+.+++.-++.-..... .+.+ .-..++.++..-...++..+..++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555444332 334444443333221100 0000 0011344455555555566666666666
Q ss_pred hHHHHHHHHhhhhHHH
Q 023768 199 TLESKLIEIEGKQDIT 214 (277)
Q Consensus 199 ~Le~Ki~~ie~kQd~t 214 (277)
.++.++..++.+....
T Consensus 149 ~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 149 EAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666555554443
No 385
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=37.05 E-value=3.5e+02 Score=28.65 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
|+.+...-..+..-+..+.+++++..+--.++++|-.+++++++++...+..+.+.
T Consensus 377 yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~ 432 (570)
T COG4477 377 YSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRY 432 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666677776767777777777777777666666555443
No 386
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.03 E-value=1.6e+02 Score=22.46 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
.+|.-|+...++.+|+.+++.-.-+.++..++..+.
T Consensus 11 ~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~ 46 (72)
T PRK02793 11 AELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLR 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666555433
No 387
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.92 E-value=2.6e+02 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=14.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde~~e 167 (277)
.|.+-+.+|...-+.++ ||.||+-+|+..|
T Consensus 112 aLk~g~~aLK~~~k~~~--idkVd~lmDei~E 141 (191)
T PTZ00446 112 ALSYAANTHKKLNNEIN--TQKVEKIIDTIQE 141 (191)
T ss_pred HHHHHHHHHHHHHhcCC--HHHHHHHHHHHHH
Confidence 33333444444444442 5666666555444
No 388
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=36.91 E-value=1.6e+02 Score=21.19 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 023768 142 SSISAAQRQ 150 (277)
Q Consensus 142 ~sL~~tKkh 150 (277)
++|..+++.
T Consensus 8 ~~L~~s~~~ 16 (66)
T PF12352_consen 8 DSLQRSHRM 16 (66)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 389
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=36.82 E-value=1.9e+02 Score=22.11 Aligned_cols=34 Identities=6% Similarity=0.224 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
-+.-+=+.+.+++..+-.++++..+-......+.
T Consensus 11 ~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L 44 (92)
T PF14712_consen 11 LLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKL 44 (92)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333333333333
No 390
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.77 E-value=3.3e+02 Score=27.52 Aligned_cols=15 Identities=7% Similarity=-0.292 Sum_probs=9.0
Q ss_pred HHHHhhhhHHHhHHH
Q 023768 204 LIEIEGKQDITTLGV 218 (277)
Q Consensus 204 i~~ie~kQd~tn~GV 218 (277)
....+.+++.+|..|
T Consensus 108 ~~~~~w~r~~l~r~v 122 (389)
T KOG0396|consen 108 ANSRKWPRNKLDRFV 122 (389)
T ss_pred hHHHHhHHHHHHHHH
Confidence 344555666677666
No 391
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=36.76 E-value=4.2e+02 Score=29.83 Aligned_cols=88 Identities=13% Similarity=0.275 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsq---RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
|-|.|-|-....++..+.++++++...+.+ +|+++...+.+. .++++.-..|+-.+++|++.=...+..+
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~l-------e~eLsAk~~eIf~~~~~L~nk~~~lt~~ 181 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKL-------EDELSAKAHDIFMIGEDLHDKNEELNEF 181 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HHHHhhhhHHHHHHHHHHhhhhhHHhHH
Confidence 346788888888888888888877666554 555555555442 4456666666666777776666666666
Q ss_pred HHHHHHHhhhhHHHhHHH
Q 023768 201 ESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 201 e~Ki~~ie~kQd~tn~GV 218 (277)
+......-+--+..|.-.
T Consensus 182 ~~q~~tkl~e~~~en~~l 199 (1265)
T KOG0976|consen 182 NMEFQTKLAEANREKKAL 199 (1265)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 655554333333333333
No 392
>PF13166 AAA_13: AAA domain
Probab=36.65 E-value=5e+02 Score=26.87 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
.++.++..+...+..+...+..++..+..|+.++..++.-.+.-|.-+..+
T Consensus 421 ~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 421 ELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334455566666666666677777777777777776666666666666666
No 393
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.60 E-value=2.1e+02 Score=31.17 Aligned_cols=82 Identities=18% Similarity=0.255 Sum_probs=45.4
Q ss_pred cccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHH---------HHHHHHHHHHhhh
Q 023768 111 KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI---------SQATQEEVTILRG 181 (277)
Q Consensus 111 KG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei---------~~~iq~eV~~i~~ 181 (277)
-.-.|||-||-+ -+.+-+.++.|.+.++..|+..+++|-+.. +++..+-.+.. -...+.+|.++++
T Consensus 54 ln~~fSv~~~tS---as~~s~~ia~q~~~L~q~lr~ldrqLh~qv--~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs 128 (797)
T KOG2211|consen 54 LNTLFSVQMMTS---ASKESNRIATQCDDLTQKLRELDRQLHAQV--LKRHMALLAQATEELFEDLELRSLLVKVAELQS 128 (797)
T ss_pred ccchhhhhhHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 344577777543 234456678888888888888888876532 22222111111 1234445666666
Q ss_pred chhhhhhHHHHHHHHH
Q 023768 182 RSKLIGDEFQSVRDIV 197 (277)
Q Consensus 182 dv~~i~~dv~~v~~~V 197 (277)
.+.+|+.|+......|
T Consensus 129 ~i~riknd~~epyk~i 144 (797)
T KOG2211|consen 129 EIKRIKNDNKEPYKII 144 (797)
T ss_pred HHHHHHHhhhhHHHHH
Confidence 6666666665544433
No 394
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=36.56 E-value=2.3e+02 Score=30.55 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~ 185 (277)
..++|+.+|..+=.++.+|+=++...++.+..=+...|+++..|+++++.
T Consensus 46 ~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~ 95 (766)
T PF10191_consen 46 YSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKA 95 (766)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555555555555555444444444444444444444433
No 395
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=36.55 E-value=4e+02 Score=25.71 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
||.+|.-|-+--++.-+=+-+.+-..|+
T Consensus 36 lDELyGqLHALHqNsLEWLTHI~h~~d~ 63 (271)
T PF05549_consen 36 LDELYGQLHALHQNSLEWLTHINHNVDQ 63 (271)
T ss_pred HHHHHHHHHHHHhhhHHHHHhcCccHHH
Confidence 5666666666665554444444444443
No 396
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=36.40 E-value=5e+02 Score=26.77 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=73.4
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHH---HHHHHHHHHHHhH---hhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKI---TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 192 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~---sL~~tKkhLsqRI---d~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~ 192 (277)
.|+.++.|.-+++.+-.+...++- .|+.-.++|.-|- +..+..+-.-.+..+++..++....-.+++-...+..
T Consensus 170 l~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaa 249 (499)
T COG4372 170 LQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAA 249 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566666666666555554444432 2222222222221 1122222222223333444444444444555555555
Q ss_pred HHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchh------------------------hhhccccccccc
Q 023768 193 VRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTEL------------------------VQASRYTLSRTT 248 (277)
Q Consensus 193 v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~------------------------~q~~~s~ssrpa 248 (277)
=.+.|..=|.|+.++|..|++.-+-|-.|-.|.+..-.-+.... +-...+..-||+
T Consensus 250 r~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ~y~~lr~q~~a~~rGQvla~a~~rv~q~~a~~qa~~qll~~AnR~a 329 (499)
T COG4372 250 RAEQIRERERQLQRLETAQARLEQEVAQLEAYYQAYVRLRQQAAATQRGQVLAGAAQRVAQAQAQAQAQAQLLSSANRPA 329 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 55666666777777777777777777666555553322211111 112345568888
Q ss_pred -ccCCCCCCCCccccCCccc
Q 023768 249 -LELPGITPSSRVTFSPILE 267 (277)
Q Consensus 249 -lE~p~~tpssr~~s~pp~~ 267 (277)
||+... |.+...--|.++
T Consensus 330 al~l~~s-P~~~~~~~pv~R 348 (499)
T COG4372 330 ALRLRRS-PRRGRRQRPVTR 348 (499)
T ss_pred ceeeecC-CCCCCCCCccee
Confidence 777654 554444445444
No 397
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=36.39 E-value=1.8e+02 Score=22.23 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=31.3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
-+.+..+..+...+++..+.++.+....+......+......+..|+.++.
T Consensus 21 GekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 21 GEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555555566666666666666666666666666666666666665554
No 398
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.29 E-value=1.5e+02 Score=24.65 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=38.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
|+.|-.+++.+...+.+..+-...++.+|.++-+.=...+-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777777777777777777777776666777777777666655
No 399
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.19 E-value=2.9e+02 Score=25.51 Aligned_cols=83 Identities=16% Similarity=0.204 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHH-HHHHHHhHhhhhhhH-------HHHHHHHHHHHHH--H----HHhhhchhhhhhHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDV-------NKIVEISQATQEE--V----TILRGRSKLIGDEF 190 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~t-KkhLsqRId~vD~kl-------de~~ei~~~iq~e--V----~~i~~dv~~i~~dv 190 (277)
+..+.+..+.++++++.+.+-.. +++.-.+|-.+...+ ..+.++...+.+. . .+.+..+..+.+++
T Consensus 146 ~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~~ 225 (318)
T TIGR00383 146 SYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDHI 225 (318)
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHH
Confidence 44556667777777776665332 223333344443333 3333333333221 0 11122233344466
Q ss_pred HHHHHHHHhHHHHHHHH
Q 023768 191 QSVRDIVQTLESKLIEI 207 (277)
Q Consensus 191 ~~v~~~V~~Le~Ki~~i 207 (277)
+.+.+.+..+..++..+
T Consensus 226 ~~l~~~~~~~~e~l~~l 242 (318)
T TIGR00383 226 LSLLEMIETYRELLSSL 242 (318)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666666654
No 400
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=36.12 E-value=7.8e+02 Score=30.02 Aligned_cols=49 Identities=12% Similarity=0.340 Sum_probs=24.2
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHH---HHHHHHHHHHHhHhhhhhhHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~---sL~~tKkhLsqRId~vD~klde~ 165 (277)
+.++.-|-.+..=+..+..+++...+ .+...++.+.+.++.+.+.+++.
T Consensus 897 ~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~ 948 (1930)
T KOG0161|consen 897 ERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEEL 948 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555444 34444444445555554444443
No 401
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.93 E-value=3.7e+02 Score=30.11 Aligned_cols=102 Identities=13% Similarity=0.202 Sum_probs=67.8
Q ss_pred CCCchHHHhhhhHHHHHHHHHHhhhhH----------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768 114 KLPDMMFATRRSLSDACNSVARQLEDV----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av~sv~kqLeqV----------s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv 183 (277)
++-|+|..++..|..-....-..|.++ .-....+-+|-++|...|.....+-.+|.+.|+|++.++.-..
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~ 558 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKET 558 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999988876554443333222 2233445566778888888888888889999999998888877
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
+.--.|++.++.-.+.|-.- -.+|..+|+-.|
T Consensus 559 esk~~eidi~n~qlkelk~~----~~~q~lake~~y 590 (1118)
T KOG1029|consen 559 ESKLNEIDIFNNQLKELKED----VNSQQLAKEELY 590 (1118)
T ss_pred HHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 77777777766555444333 335555555543
No 402
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=35.88 E-value=3.6e+02 Score=24.93 Aligned_cols=68 Identities=9% Similarity=0.150 Sum_probs=33.8
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 146 ~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
.-|.+|...++++-..+++...=-..-...-..+..++..++.+++.....-..|+.++..+...-+|
T Consensus 68 ~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 68 KEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 33444444444444444443333333333444455555555566666666666666666655544333
No 403
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=35.78 E-value=3e+02 Score=29.17 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH-----HHHHHHhhhhHHHhHHH
Q 023768 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE-----SKLIEIEGKQDITTLGV 218 (277)
Q Consensus 165 ~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le-----~Ki~~ie~kQd~tn~GV 218 (277)
..+...+.+..+..+...+.........+++.+..|. =.+.++|+=...+++-+
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~Ll~lA~q~L 434 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQMLSSASQQL 434 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH
Confidence 3344455555555566666666666777777776553 33555665555555544
No 404
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=35.77 E-value=10 Score=28.43 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=16.0
Q ss_pred ceeeeEccCccceeeccC
Q 023768 7 KLTFLVGAGILTSVLAKE 24 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k~ 24 (277)
|++++.|+|++.|.++++
T Consensus 1 kIlvvC~~Gi~TS~~~~~ 18 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVAN 18 (90)
T ss_dssp EEEEEESSSSHHHHHHHH
T ss_pred CEEEECCChHHHHHHHHH
Confidence 799999999999998854
No 405
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=35.46 E-value=3.6e+02 Score=24.89 Aligned_cols=42 Identities=14% Similarity=0.407 Sum_probs=33.5
Q ss_pred cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 023768 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (277)
Q Consensus 113 ~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~ 157 (277)
|||+. =|.+.+.+.|.++-++++.|+..+..-|.+++---..
T Consensus 70 WsF~s---~~~qk~~~~~~~l~~~~~~~kqdi~t~~e~i~~ek~~ 111 (209)
T COG5124 70 WSFKS---QTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKAT 111 (209)
T ss_pred Eecch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 45553 4899999999999999999999998877777655543
No 406
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=35.26 E-value=1.7e+02 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.267 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHH-------hhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 162 VNKIVEISQATQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 162 lde~~ei~~~iq~eV~~-------i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
+++.+|=-....+++.. +...-.+.+.+-...+..+++|=|||+.
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~~ 78 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444444444444 5555666777777778888888887764
No 407
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.24 E-value=2.1e+02 Score=22.03 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kl 162 (277)
.++...+.....++.+....++.++....+.+-.-+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433333
No 408
>PF14182 YgaB: YgaB-like protein
Probab=35.22 E-value=2.3e+02 Score=22.60 Aligned_cols=44 Identities=11% Similarity=0.320 Sum_probs=29.3
Q ss_pred HhhhhhhHHHHHHHHHHHHH-----HHHHhhhchhhhhhHHHHHHHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~-----eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
+=.|-..+|-|.+|-++..+ +...|+..+.+.+.+++.||.+..
T Consensus 16 LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 16 LLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556677777777766654 466677777777777777776654
No 409
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.78 E-value=3.6e+02 Score=24.70 Aligned_cols=69 Identities=4% Similarity=0.127 Sum_probs=39.8
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
+.+..-+....+.+.++..++..-..||++..+......+.+.+..+-......-++.++.++..+...
T Consensus 167 ~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 167 KWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667777777777777777776666666666655554444444444444333333333
No 410
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.72 E-value=2e+02 Score=30.28 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=62.6
Q ss_pred CCCchHHHhhhhHHHHH------HHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh---HHHHHHHHHHHHHHHHHhhhchh
Q 023768 114 KLPDMMFATRRSLSDAC------NSVARQLEDVYSSISAAQRQLSSKITSVDRD---VNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av------~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k---lde~~ei~~~iq~eV~~i~~dv~ 184 (277)
+..|.++-..+.|++.+ ..+.+.++..+..|..+...|..-++.++-. |++..+=...++.=--+-+.++.
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45677777777776443 4667777777777777777777777777764 55543333333333333333333
Q ss_pred hhhhHHHHHHHHHHhH---HHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 185 LIGDEFQSVRDIVQTL---ESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 185 ~i~~dv~~v~~~V~~L---e~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
.+-.=.+.++.-...| |.++..++...+..-.-....|+-.
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~L 365 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEAL 365 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333 3556666666666666666666544
No 411
>PLN02279 ent-kaur-16-ene synthase
Probab=34.63 E-value=4.5e+02 Score=28.77 Aligned_cols=109 Identities=16% Similarity=0.146 Sum_probs=62.0
Q ss_pred eeEEecccCCCchHHHhhhhHHHHHHHHHHhhh--hHHHHHHHHHHHHHHhHhh------hhhhHHHHHHHHHHHHH-HH
Q 023768 106 GYVWWKGWKLPDMMFATRRSLSDACNSVARQLE--DVYSSISAAQRQLSSKITS------VDRDVNKIVEISQATQE-EV 176 (277)
Q Consensus 106 gYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLe--qVs~sL~~tKkhLsqRId~------vD~klde~~ei~~~iq~-eV 176 (277)
.=.|||-..|+++=|+=.|=+..-.-.++---| --.+++.=||- ..=+.. +..++||....++.|++ |.
T Consensus 477 l~rWwke~~L~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~--~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~ 554 (784)
T PLN02279 477 LERWIVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKN--GVLTTVVDDFFDVGGSEEELENLIQLVEKWDV 554 (784)
T ss_pred hCeeHHhcCCccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHH--HHHHHHHHHHhhccCCHHHHHHHHHHHHHhcc
Confidence 457999999998888744444433333332111 11222222221 111122 45578888888888887 54
Q ss_pred H-HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHH
Q 023768 177 T-ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (277)
Q Consensus 177 ~-~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (277)
. .+..--+.++.=...+-..++.++.+.-..++. +..+.-
T Consensus 555 ~~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr-~v~~~l 595 (784)
T PLN02279 555 NGSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGR-NVTSHI 595 (784)
T ss_pred ccchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHH
Confidence 4 222223556667778888888888886655543 444433
No 412
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=34.58 E-value=6.2e+02 Score=29.02 Aligned_cols=109 Identities=17% Similarity=0.187 Sum_probs=60.4
Q ss_pred hhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHH
Q 023768 101 VAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVT 177 (277)
Q Consensus 101 GavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR---Id~vD~klde~~ei~~~iq~eV~ 177 (277)
|++-=||.=-|. +|=-+-.-+.--.+++..+.++|+.+++++..+ |+.+-..|.+...-......+..
T Consensus 653 G~lTgGy~D~kr---------srLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~ 723 (1200)
T KOG0964|consen 653 GVLTGGYEDQKR---------SRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHE 723 (1200)
T ss_pred CCccccchhhhh---------hHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 555556654332 233344555666788888999999998877544 44444444333333333344555
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
.++..+..+......++..+.....++..+...-...-.+-
T Consensus 724 ~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~ 764 (1200)
T KOG0964|consen 724 KLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQS 764 (1200)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666666555555555555444444443333
No 413
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=34.54 E-value=3.3e+02 Score=24.96 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=18.9
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISA 146 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~ 146 (277)
|.|.|..==+.--+|+..+.+.++.+.+-+..
T Consensus 114 ~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~ 145 (217)
T COG1392 114 LDEEFLRLVDLSLKAAELLAEAIELLEDLLES 145 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33556555555556666666666666665555
No 414
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.52 E-value=2.1e+02 Score=27.33 Aligned_cols=54 Identities=11% Similarity=0.226 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 165 ~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+.++.++=.+.+..+..|+..+..-++.+-.+|..=...++.||++.+.|-.-|
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nv 224 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNV 224 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHH
Confidence 333344334445555555555555555555555555567777777776665444
No 415
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=34.51 E-value=4.3e+02 Score=30.65 Aligned_cols=89 Identities=12% Similarity=0.172 Sum_probs=40.8
Q ss_pred CCCchHHHhhhhHHHHHHHHHH----------------hhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 023768 114 KLPDMMFATRRSLSDACNSVAR----------------QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 177 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av~sv~k----------------qLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~ 177 (277)
+.+|+.+...+..+-||..+-. -+.+..+.++..-+...+.++.....+.+..+-.++.+++..
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l~~wv~a~~~~~kv~~~v~p~~~~~~~~e~~~~~~~~~l~~~~~~l~~~e~~~~~~~~~~~ 972 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGLCLWVIAIDKYSKVLKVVEPKRQELARLEAELKAAMKELEEKSAELQDLEEKLQRLKDEYE 972 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666667766532 222333333333333333344444444444444444444444
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
..-.....+..|+...+.+....+.
T Consensus 973 ~~~~~~~~~~~~~~~~~~k~~~a~~ 997 (1395)
T KOG3595|consen 973 QLIAEKQELEEDMDACELKLLRAEE 997 (1395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443333
No 416
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=34.51 E-value=4.1e+02 Score=25.28 Aligned_cols=85 Identities=9% Similarity=0.165 Sum_probs=52.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---Hhh--hhhhHHHHHHHHHHHHHHHHHhhhchhhh-------hhH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITS--VDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 189 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR---Id~--vD~klde~~ei~~~iq~eV~~i~~dv~~i-------~~d 189 (277)
.++.-.+++.-+.++++.....+..+++.|..= =.. .+.......+....++.+..+++..+... +=+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 444567899999999999999999998777541 111 12222233344555555555555554443 345
Q ss_pred HHHHHHHHHhHHHHHHH
Q 023768 190 FQSVRDIVQTLESKLIE 206 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ 206 (277)
|..++..+..|+.++..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66666666666666654
No 417
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=34.33 E-value=4.8e+02 Score=25.93 Aligned_cols=74 Identities=15% Similarity=0.249 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhh----hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITS----VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~----vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
-|=..+..=+..|+.|-..|...-..+.+..++ +..+.+...++...+.+-+ ..+..++..+...-.....+
T Consensus 241 e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~----~~l~~~~~~l~~yl~~~~~~ 316 (412)
T PF04108_consen 241 EMLEVLENDAQELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEAL----EELRKFGERLPSYLAAFHDF 316 (412)
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666666666666666666666 4444444444444444433 33444444333333333333
Q ss_pred HH
Q 023768 201 ES 202 (277)
Q Consensus 201 e~ 202 (277)
+.
T Consensus 317 ~~ 318 (412)
T PF04108_consen 317 EE 318 (412)
T ss_pred HH
Confidence 33
No 418
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=34.28 E-value=4.2e+02 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 124 RSLSDACNSVARQLEDVYS-----SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~-----sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+-|++.+..+.++++..+. +...-|.+.-++.+++|..|+...+=-++|-++++.++..
T Consensus 144 ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~ 207 (254)
T KOG2196|consen 144 QELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKT 207 (254)
T ss_pred HHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 3455555555555544221 2222233444555566666655555555555555555443
No 419
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.19 E-value=4e+02 Score=24.96 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHhhhhHHHH--HHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSS--ISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~s--L~~tKkhLsq---RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V 197 (277)
|+.|.++...|-.+|+..-.- -..+|..=.+ .-+.+|....+-.++..=+++-+.+++.-++.+..+++.+....
T Consensus 73 k~~L~e~Rk~IE~~MErFK~vEkesKtKafSkeGL~~~~k~dp~e~ek~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~ 152 (233)
T PF04065_consen 73 KKKLLENRKLIEEQMERFKVVEKESKTKAFSKEGLMAASKLDPKEKEKEEARDWLKDSIDELNRQIEQLEAEIESLSSQK 152 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 677888888888888876433 2223222111 12244666666777788888888888888888888888877654
Q ss_pred H------hHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCc
Q 023768 198 Q------TLESKLIEIEGKQDITTLGVKKLCDRARELENGRP 233 (277)
Q Consensus 198 ~------~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~ 233 (277)
. .-+.++..++....+-+-=|..|-..+..++|+.+
T Consensus 153 kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l 194 (233)
T PF04065_consen 153 KKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDNDEL 194 (233)
T ss_pred ccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3 46677777777777777777777777777777755
No 420
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=34.15 E-value=13 Score=31.23 Aligned_cols=67 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (277)
Q Consensus 154 RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (277)
+++.+..++++..+-...++.+|.+...++..+...++.....|..|+..+..+..+++....-...
T Consensus 18 ~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 18 RLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444455555555566677777777777788888888888888888888888888877666555444
No 421
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.07 E-value=5e+02 Score=27.42 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=20.6
Q ss_pred eEccCccceeeccCCCccchhHhhhhHHHHHHHhh-hcCCCC
Q 023768 11 LVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLI-KQDDPG 51 (277)
Q Consensus 11 LvGAG~~GSvl~k~gkL~d~~~~l~g~~k~~~k~~-k~~d~~ 51 (277)
|+-.||-+.|-+|+=+.|.--+ |..++|++ ..-||.
T Consensus 117 L~engfd~pis~k~l~~PS~k~-----F~~IFK~LY~~lDp~ 153 (622)
T COG5185 117 LKENGFDIPISIKFLKQPSQKG-----FIIIFKWLYLRLDPG 153 (622)
T ss_pred HHHcCCCcchhHHHhcCCcccc-----HHHHHHHHHhccCCC
Confidence 4456777777777766665544 44455555 334444
No 422
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.89 E-value=3.3e+02 Score=24.03 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666677777777766
No 423
>PF15456 Uds1: Up-regulated During Septation
Probab=33.86 E-value=2.9e+02 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=21.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHh
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId 156 (277)
|+++.|.+..++.+|..+++.|.-+.-
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~le~k 50 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLALESK 50 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888774433
No 424
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.80 E-value=3.4e+02 Score=27.19 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=29.1
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k 161 (277)
+.|..+-.+-+.+.+++.+++..|...++.+.+.|+..-++
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~ 167 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQ 167 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777888888888888877777777666443333
No 425
>PRK00295 hypothetical protein; Provisional
Probab=33.80 E-value=1.9e+02 Score=21.81 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=25.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 185 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~ 185 (277)
.+|.-|+...++.+|+.+++.-.-++++..++..+..
T Consensus 8 ~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 8 TELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766655443
No 426
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=33.78 E-value=2.9e+02 Score=23.26 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhhchhhh-hhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 170 QATQEEVTILRGRSKLI-GDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i-~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
+.+++++.++-.|..-+ +.+++.++..|..||..+..++.++
T Consensus 64 ~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 64 EKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555555422 2455556666666666665555543
No 427
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=33.60 E-value=1.4e+02 Score=28.69 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=6.6
Q ss_pred HHhhhhHHHHHHHHHHH
Q 023768 134 ARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkh 150 (277)
.++|+.....|.....+
T Consensus 234 ~~~L~~~~~~l~~l~~~ 250 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEK 250 (344)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444433333
No 428
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=33.57 E-value=3.3e+02 Score=26.75 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=48.5
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHH---HHHHHHHHHHHhHhhhh-----------------hhHHHHHHHHHHHHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYS---SISAAQRQLSSKITSVD-----------------RDVNKIVEISQATQE 174 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~---sL~~tKkhLsqRId~vD-----------------~klde~~ei~~~iq~ 174 (277)
+.+++.+...=..++++-+.+.|...-+ .+...+.-...=++.++ .-++.+.++.++-++
T Consensus 195 ~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~v~s~re~~d~W~~~ae~~~~e~~~S~efak~~G~lvna~m~lr~~~qe 274 (320)
T TIGR01834 195 MADYQLLEADIGYKSFAALMSDLLARAKSGKPVKTAKALYDLWVIAAEEAYAEVFASEENAKVHGKFINALMRLRIQQQE 274 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666555332 11212222222222222 223333344444444
Q ss_pred HHHHhhhchhh-hhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 175 EVTILRGRSKL-IGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 175 eV~~i~~dv~~-i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.+.+.-..+.- .+.||+.++..+..||.++.+++.
T Consensus 275 ~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k 310 (320)
T TIGR01834 275 IVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKK 310 (320)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 677888888888888887776654
No 429
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=33.24 E-value=1.5e+02 Score=19.96 Aligned_cols=17 Identities=6% Similarity=0.175 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHHHHHHH
Q 023768 158 VDRDVNKIVEISQATQE 174 (277)
Q Consensus 158 vD~klde~~ei~~~iq~ 174 (277)
+...+-++..+...|..
T Consensus 11 l~~~i~~l~~l~~~i~~ 27 (60)
T cd00193 11 LEASIGELKQIFLDLGT 27 (60)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 430
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=32.90 E-value=4.1e+02 Score=24.78 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=6.8
Q ss_pred HhhhhHHHhHHHHHHH
Q 023768 207 IEGKQDITTLGVKKLC 222 (277)
Q Consensus 207 ie~kQd~tn~GV~~Lc 222 (277)
++.+.+..-.-+..|-
T Consensus 114 l~~n~~~L~~~~~~L~ 129 (267)
T PF11887_consen 114 LADNRDNLIRALDDLR 129 (267)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3444444444443333
No 431
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=32.48 E-value=1.8e+02 Score=22.63 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHH---HHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKL---IEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 174 ~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki---~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
++|.+|+.++..|..++..|+.....+-... ..+..+-+....-+..++..+...
T Consensus 8 ~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 65 (117)
T smart00503 8 EKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAK 65 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
No 432
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=32.44 E-value=4e+02 Score=28.82 Aligned_cols=83 Identities=16% Similarity=0.219 Sum_probs=41.9
Q ss_pred HHhhhhHHHHHHHHHHh--hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHH
Q 023768 120 FATRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 197 (277)
Q Consensus 120 ~VTkr~m~~Av~sv~kq--LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V 197 (277)
|=.|+=...||.+..+. .+.....++..--.|.-.++.+...+|+. +.+.-.-+-.+-.|+..++.|+..++..+
T Consensus 10 FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~---~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~ 86 (766)
T PF10191_consen 10 FDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEET---SQQALQRVPRVLREVDRLRQEAASLQEQM 86 (766)
T ss_pred CCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666555 44444455555566666666666666664 33333333344444444444444444444
Q ss_pred HhHHHHHH
Q 023768 198 QTLESKLI 205 (277)
Q Consensus 198 ~~Le~Ki~ 205 (277)
..+-.++.
T Consensus 87 ~~v~~~~~ 94 (766)
T PF10191_consen 87 ASVQEEIK 94 (766)
T ss_pred HHHHHHHh
Confidence 44333333
No 433
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.37 E-value=4e+02 Score=26.16 Aligned_cols=96 Identities=18% Similarity=0.210 Sum_probs=65.0
Q ss_pred hhhHH-HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH--------------------------------HHHH
Q 023768 123 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--------------------------------VEIS 169 (277)
Q Consensus 123 kr~m~-~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~--------------------------------~ei~ 169 (277)
++.+. |+...+..+|...|....+....--.||.+-+.+-.+. .+.+
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 44555 77788889999999999888766666655443321111 1222
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 170 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
..=.+||+.+..-+.....-++.+..+|-.=+.-+++|.+|.+-|+--+
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v 262 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRV 262 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhH
Confidence 2233457777777777777777888888777788888888888777655
No 434
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.35 E-value=3.6e+02 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=31.0
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+.|..+-..-..+..++.++++.|...++.+...|+..-+++.+
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ 182 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINS 182 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777778888888888888888777777666544444433
No 435
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=32.34 E-value=2.9e+02 Score=22.76 Aligned_cols=62 Identities=10% Similarity=0.198 Sum_probs=38.3
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhh-------chhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 154 KITSVDRDVNKIVEISQATQEEVTILRG-------RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 154 RId~vD~klde~~ei~~~iq~eV~~i~~-------dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
+++.+|+++-.....+...-.+.+.-+. .-+.|..-...+...++.++..|. .=|+|||++.
T Consensus 7 ~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr----------~qI~~L~e~~ 75 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELR----------RQIKYLEEVS 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhc
Confidence 4455555655555555555555555555 456677777777777766666665 4477888764
No 436
>PHA03386 P10 fibrous body protein; Provisional
Probab=32.33 E-value=1.4e+02 Score=24.48 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=4.4
Q ss_pred HHHhHHHHHHH
Q 023768 196 IVQTLESKLIE 206 (277)
Q Consensus 196 ~V~~Le~Ki~~ 206 (277)
.+.+|..|+..
T Consensus 44 qL~~l~tkV~~ 54 (94)
T PHA03386 44 QLTELDTKVSD 54 (94)
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 437
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.32 E-value=2.9e+02 Score=22.81 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=5.9
Q ss_pred HHHHhHhhhhhhHHH
Q 023768 150 QLSSKITSVDRDVNK 164 (277)
Q Consensus 150 hLsqRId~vD~klde 164 (277)
+|.+.+..+...+.+
T Consensus 24 ~l~~~~~~l~~~~~e 38 (140)
T PRK03947 24 ALQQQLEELQASINE 38 (140)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 438
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.29 E-value=3.3e+02 Score=23.46 Aligned_cols=43 Identities=12% Similarity=0.229 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
+.+.|....+.+..||+.+...|++....+..+..-|..+++-
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~ 65 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDS 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566777888888888888888888776666666655555543
No 439
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=32.26 E-value=4.2e+02 Score=24.65 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=19.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
.+..-|+.---.|...||+|..|-=.+|...-..
T Consensus 111 pL~~~le~dik~i~k~RKkLe~~RLd~D~~k~r~ 144 (244)
T cd07595 111 PLQNILEVEIPNIQKQKKRLSKLVLDMDSARSRY 144 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3333444444566677777777766666655443
No 440
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=32.25 E-value=2.1e+02 Score=30.76 Aligned_cols=55 Identities=7% Similarity=0.178 Sum_probs=46.9
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.++.++.+-.+++.|..+..++.+=+++-+.|++.|..||+.|+..-..+.-++.
T Consensus 73 es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~ 127 (683)
T KOG1961|consen 73 ESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLE 127 (683)
T ss_pred hhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHH
Confidence 4457788888999999999999999999999999999999999987776655444
No 441
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.22 E-value=3.1e+02 Score=27.52 Aligned_cols=14 Identities=7% Similarity=0.100 Sum_probs=9.3
Q ss_pred cchhHhhhhHHHHH
Q 023768 28 SSVSDAVGGTLKIV 41 (277)
Q Consensus 28 ~d~~~~l~g~~k~~ 41 (277)
+|+++++|.++-.+
T Consensus 122 sdLv~Liq~l~a~f 135 (365)
T KOG2391|consen 122 SDLVGLIQELIAAF 135 (365)
T ss_pred chHHHHHHHHHHHh
Confidence 57887777765543
No 442
>PRK08124 flagellar motor protein MotA; Validated
Probab=32.15 E-value=3.7e+02 Score=25.20 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=47.6
Q ss_pred chhhhHHhhhhheeeEEecc-----cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-HhhhhhhHHHHH
Q 023768 93 KYGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK-ITSVDRDVNKIV 166 (277)
Q Consensus 93 ~~~~iv~iGavGYgYmwWKG-----~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR-Id~vD~klde~~ 166 (277)
..++++++|++-+||++=.| |.++-+|-|.--.+.-++ ++-.+..+...+...++-+..+ -..-.+-+++..
T Consensus 6 iiG~~~~~~~i~~g~~~~gg~~~~~~~~~~~lIV~Ggt~~a~~--i~~~~~~~~~~~k~~~~~f~~~~~~~~~~~i~~l~ 83 (263)
T PRK08124 6 IIGLILGLIAVVVGMVVKGASLAVLLNPAAILIIIVGTIAAVM--IAFPMSELKKVPKLFKVLFKEKKDPSKEELIEQFV 83 (263)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHhhHHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 34566788888889888666 778888888777766554 3444556666666666555332 222333344444
Q ss_pred HHHHHHH
Q 023768 167 EISQATQ 173 (277)
Q Consensus 167 ei~~~iq 173 (277)
++...-+
T Consensus 84 ~l~~~~r 90 (263)
T PRK08124 84 EWASESR 90 (263)
T ss_pred HHHHHhc
Confidence 4444443
No 443
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=32.12 E-value=2.3e+02 Score=21.65 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH-------------------HHHHHHHHHHHHHHhhhchh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK-------------------IVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde-------------------~~ei~~~iq~eV~~i~~dv~ 184 (277)
..+-+-+..+..++..+...+...++++. +++.+-+.|+. ..++...+.++...+..+++
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~-~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLR-ELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 185 LIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 185 ~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
.+......+...+..++.++..+-..|
T Consensus 80 ~l~~~~~~l~~~l~~~~~~l~~~~~~q 106 (106)
T PF01920_consen 80 KLEKQLKYLEKKLKELKKKLYELFGQQ 106 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
No 444
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=32.10 E-value=3.9e+02 Score=24.23 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=32.7
Q ss_pred hHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768 118 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (277)
Q Consensus 118 lM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD 159 (277)
-..-.|+.+.+.+..+.+.+......+..+|+.-.++=..++
T Consensus 96 ~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 96 KQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888888888888888989888888876644443
No 445
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=31.98 E-value=3.6e+02 Score=23.77 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 189 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~d 189 (277)
...|..=++++..-++..+...++..++-+..++++.+.+....+|+.|
T Consensus 36 ~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455555555555555555555555555554
No 446
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=31.94 E-value=3.5e+02 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=16.4
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
+++.+.+|+.-=-.-++.+.+.|.++...+..+.
T Consensus 60 K~N~L~eDvq~Kv~tld~vf~aV~dl~~SV~~ln 93 (139)
T COG4768 60 KTNTLAEDVQGKVATLDPVFDAVKDLGQSVSDLN 93 (139)
T ss_pred HHHHHHHHHhhhHHhHhHHHHHHHHHHHHHHHHH
Confidence 3444444433333334555556666665555443
No 447
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.94 E-value=1.3e+02 Score=22.14 Aligned_cols=38 Identities=11% Similarity=0.322 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
+-...+-.+.+.+|+.|-+-=..++.|||.++..+.+.
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl 47 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34455566667888888888888999999988887664
No 448
>PRK00736 hypothetical protein; Provisional
Probab=31.89 E-value=1.9e+02 Score=21.82 Aligned_cols=34 Identities=9% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
.+|.-|+...++.+|+.+++...=++++..++.-
T Consensus 8 ~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 8 TELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777766666666666666554
No 449
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=31.79 E-value=1.4e+02 Score=29.71 Aligned_cols=25 Identities=8% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHHhhhchhhhhhH---HHHHHHHHHhH
Q 023768 176 VTILRGRSKLIGDE---FQSVRDIVQTL 200 (277)
Q Consensus 176 V~~i~~dv~~i~~d---v~~v~~~V~~L 200 (277)
+..+-.|++.|=.| .+.|+..|++|
T Consensus 339 i~~vs~dv~~ft~D~~~r~~Lr~li~~L 366 (370)
T PLN03094 339 IESISSDISGFTGDEATRRNLKQLIQSL 366 (370)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33444444444333 33344444444
No 450
>PF08010 Phage_30_3: Bacteriophage protein GP30.3; InterPro: IPR012596 Proteins in this family are bacteriophage Y12G proteins. Gene Y12G encodes a 17.1kDa protein in Gp30-rIII intergenic region, which in T4 is a 75 amino acid basic peptide which has a C terminus rich in charged amino acids [][].
Probab=31.78 E-value=48 Score=29.18 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=37.0
Q ss_pred eEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768 107 YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 107 YmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkh 150 (277)
=+||||.-|+=.-=.=++=+.+|+..+. |=+....+|.+|+.+
T Consensus 72 tlYw~G~p~~R~S~~y~~Li~~Ay~~~~-QN~~F~~aL~aT~~~ 114 (146)
T PF08010_consen 72 TLYWKGEPIHRHSEAYQNLIDRAYRAMF-QNEGFRRALLATKNS 114 (146)
T ss_pred ceeECCCccccCCHHHHHHHHHHHHHHH-hCHHHHHHHHHcCCC
Confidence 3799999998777777788999999999 999999999998854
No 451
>PRK09343 prefoldin subunit beta; Provisional
Probab=31.72 E-value=1.2e+02 Score=25.10 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i 186 (277)
|-.....++..|..|++..+.+++.+..-...+++.+.+++..+..+
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 452
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.70 E-value=3.8e+02 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHH---HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 161 DVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 161 klde~~ei~~~iq~e---V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
+++++...-+..++. ...++...+....++..++..+..|+.++..++.++....+--..|...+
T Consensus 81 tl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 81 TLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555542 44555555666777777777777777777777776665555544454443
No 453
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=31.68 E-value=2.6e+02 Score=27.53 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 153 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsq 153 (277)
|.|.-..-++.+++..++-+.+|...|++|.+
T Consensus 19 thr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~ 50 (330)
T PF07851_consen 19 THRSYKQKLEELSKLQDKCSSSISHQKKRLKE 50 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666777776666543
No 454
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.68 E-value=3.6e+02 Score=28.45 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=39.6
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
+.|..+-..-.++..++.++++.|...++.+..+|+..-+++....+=+..+-+++..
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888889999999999999988888888765554444433333333334433
No 455
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=31.62 E-value=1.4e+02 Score=23.27 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
.++.+....+--.|..+|..+.. +..++.+.++|.+-++..++++..-+.=+..++
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~-lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRE-LPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555444432 444777777777766666666655555444443
No 456
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=31.55 E-value=1.2e+02 Score=30.30 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCC--CCcchhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHH
Q 023768 86 GSGT--GAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (277)
Q Consensus 86 ~sg~--g~~~~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kld 163 (277)
++|. |.-...+++++|+-||-|.+..--.. -.+...|.+-.+....+..+--..+...-+++..++..++.++.
T Consensus 34 ~~g~~l~~~aili~la~g~g~y~~~~qq~~~~----~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~ 109 (390)
T PRK10920 34 RTGLVLSAVAIAIALAAGAGLYYHGKQQAQNQ----TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQA 109 (390)
T ss_pred CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566 33567888899999999999976433 33555666666666555555555555555555556666555555
Q ss_pred HHHHHHHHHHHHHHHhhhch-------------h------hhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 164 KIVEISQATQEEVTILRGRS-------------K------LIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 164 e~~ei~~~iq~eV~~i~~dv-------------~------~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+...-....+..+.++.+.- . .+..|++.--..++.-+.++.++..
T Consensus 110 ~l~~q~~~Lq~~~~~ls~~~~~dWlLaEaeyLlrlA~qkL~l~~Dv~tA~alLksAD~rLa~~~d 174 (390)
T PRK10920 110 ALAKQLDELQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAALLKSADASLADMND 174 (390)
T ss_pred HHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCC
Confidence 55555555555555543221 1 1455666666666666677766554
No 457
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=31.48 E-value=15 Score=33.14 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=12.4
Q ss_pred eeeEccCccceeecc
Q 023768 9 TFLVGAGILTSVLAK 23 (277)
Q Consensus 9 ~iLvGAG~~GSvl~k 23 (277)
+|+||+|.+|++++.
T Consensus 3 ~iIVGsG~~G~v~A~ 17 (296)
T PF00732_consen 3 YIIVGSGAGGSVVAS 17 (296)
T ss_dssp EEEES-SHHHHHHHH
T ss_pred EEEECcCHHHHHHHH
Confidence 589999999999875
No 458
>PRK01203 prefoldin subunit alpha; Provisional
Probab=31.46 E-value=3e+02 Score=23.68 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=26.8
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQL 151 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhL 151 (277)
++.-+|=||.-=| ++.++++-+.++++++...+..-.+.+
T Consensus 71 VlVdIGTGy~VEK-------------~~e~kie~L~~~ie~Le~~i~~K~~~l 110 (130)
T PRK01203 71 LIVPIGSGVYIAE-------------ERERTIERLKENLEDLKDSIQKLNDQR 110 (130)
T ss_pred EEEEcCCCeEEEe-------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888887655 445677777777777766665544444
No 459
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=31.36 E-value=15 Score=32.85 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=9.1
Q ss_pred eeeEccCccceeec
Q 023768 9 TFLVGAGILTSVLA 22 (277)
Q Consensus 9 ~iLvGAG~~GSvl~ 22 (277)
+++||||++|..++
T Consensus 4 V~IvGaG~aGl~~A 17 (356)
T PF01494_consen 4 VAIVGAGPAGLAAA 17 (356)
T ss_dssp EEEE--SHHHHHHH
T ss_pred EEEECCCHHHHHHH
Confidence 57899999987654
No 460
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=31.28 E-value=53 Score=26.06 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhHHHhH
Q 023768 188 DEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (277)
+|++.++ .|++.+|+|.++||.
T Consensus 15 ~d~~~i~-------~rLD~iEeKVEftn~ 36 (77)
T PRK01026 15 KDFKEIQ-------KRLDEIEEKVEFTNA 36 (77)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3455555 444455555555553
No 461
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.15 E-value=34 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=28.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
=|.||++.+. .++.+-++--+.|...=++|.+||+.|++=+|+
T Consensus 25 HY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 25 HYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4777777664 244444555555666667888898888776654
No 462
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=30.90 E-value=1.3e+02 Score=31.44 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 162 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 162 lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
..+...++.++.+|+.++..-++...+++.++.++|-.=..-+|-+-.+|...|.-+.--|=|.
T Consensus 423 ~~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~a~~Gg~C~~l~~~CC~y 486 (561)
T PF00429_consen 423 TQQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLTAEQGGLCAALKEECCFY 486 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTS-----
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhhhcCCchhhhCCceEEE
Confidence 5666778888888999999999999999999999998877778888999999999997777654
No 463
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=30.89 E-value=5.2e+02 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 185 LIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 185 ~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
.++..++.++..+..+..+++++|+..
T Consensus 292 ~vk~vv~el~k~~~~f~~qleELeehv 318 (336)
T PF05055_consen 292 AVKEVVKELKKNVESFTEQLEELEEHV 318 (336)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555666666666666666666554
No 464
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=30.82 E-value=6.1e+02 Score=26.11 Aligned_cols=107 Identities=17% Similarity=0.298 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHH--------------HHHHHHHHhHhhhhhhH-HHHHH-HHHHHHHHHHHhhhchhh
Q 023768 122 TRRSLSDACNSVARQLEDVYSSIS--------------AAQRQLSSKITSVDRDV-NKIVE-ISQATQEEVTILRGRSKL 185 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~--------------~tKkhLsqRId~vD~kl-de~~e-i~~~iq~eV~~i~~dv~~ 185 (277)
.+-++..++..+.+.++.+-+.|. ..-++|..|...+.+.+ |-.+. +...++.++.+.-.++..
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~ 87 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQE 87 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH--HHHHHHHHhhc
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV--KKLCDRARELE 229 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV--~~Lc~~~~~~~ 229 (277)
+..+++..+..+..|+ ++..++.-=+-.+..+ ..++..++.++
T Consensus 88 L~~eL~~~~~~l~~L~-~L~~i~~~l~~~~~al~~~~~~~Aa~~L~ 132 (593)
T PF06248_consen 88 LKRELEENEQLLEVLE-QLQEIDELLEEVEEALKEGNYLDAADLLE 132 (593)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
No 465
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=30.74 E-value=4.3e+02 Score=24.35 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 154 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR 154 (277)
.++.+.+...-+-+++.+.+..+..+|+...++
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~ 145 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAA 145 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777778888888888776644
No 466
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=30.73 E-value=1.2e+02 Score=30.33 Aligned_cols=19 Identities=21% Similarity=0.454 Sum_probs=12.1
Q ss_pred Hhhhhhee------eEEecccCCCc
Q 023768 99 VIVAVGYG------YVWWKGWKLPD 117 (277)
Q Consensus 99 ~iGavGYg------YmwWKG~s~SD 117 (277)
|+=++|+- -+.|||-.|.-
T Consensus 114 VLEGI~LIeKksKN~IqW~G~~~~~ 138 (354)
T KOG2577|consen 114 VLEGIGLIEKKSKNNIQWIGGDFNS 138 (354)
T ss_pred hhhcccceeeccccceeeecCCCcc
Confidence 45555554 46799986653
No 467
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.58 E-value=1.3e+02 Score=31.15 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
|....++...++.++.+++.+......+|.||..+|.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4456777777777777777777777777777775444
No 468
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=30.56 E-value=1.9e+02 Score=24.43 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
..+.+-++.+.++-...+..|..+|+ +|+.|+=.|-.+++-..---..+..|-.++...++.+..++..- ..+
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~p----~~~ 129 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNAP----AQL 129 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcCc----hhH
Q ss_pred HHHHHHH
Q 023768 201 ESKLIEI 207 (277)
Q Consensus 201 e~Ki~~i 207 (277)
-+++.++
T Consensus 130 ~~rl~El 136 (141)
T PF13874_consen 130 KGRLNEL 136 (141)
T ss_dssp -------
T ss_pred HHHHHHH
No 469
>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown.; PDB: 4AJ5_G.
Probab=30.52 E-value=2.4e+02 Score=26.27 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=12.2
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 179 LRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 179 i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
++.+++.|+.++..++..+..+|..+.
T Consensus 20 ~~~~L~~i~~~~~~i~~~l~~~~~~l~ 46 (243)
T PF07160_consen 20 LKDTLSKIDQEVSAIEELLNDIEQELQ 46 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 470
>PF08340 DUF1732: Domain of unknown function (DUF1732); InterPro: IPR013551 This domain of unknown function is found at the C terminus of bacterial proteins, many of which are hypothetical and include proteins of the YicC family.
Probab=30.42 E-value=80 Score=25.49 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhc
Q 023768 157 SVDRDVNKIVEISQATQEEVTILRGR 182 (277)
Q Consensus 157 ~vD~klde~~ei~~~iq~eV~~i~~d 182 (277)
-+.+|||= +.+.+.+|++.+...
T Consensus 37 ~vGrkLdF---l~QEm~RE~NTigSK 59 (87)
T PF08340_consen 37 PVGRKLDF---LLQEMNREINTIGSK 59 (87)
T ss_pred CCCCCCcc---chhhhccHHHHHHHh
Confidence 34444444 344555555544443
No 471
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=30.20 E-value=5.2e+02 Score=26.17 Aligned_cols=144 Identities=10% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh--hhHHHHHHHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIV 197 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqR---Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i--~~dv~~v~~~V 197 (277)
+++|-....+...|+|++-++|+.....-.+- -...+.=++.|..++..-+.-++.++..+..| .+|+..++...
T Consensus 55 ~~~~~~vly~a~~hi~~L~~~Le~~d~~~~~~~~~~~~~~~v~~~c~t~i~af~~i~~~L~~n~~~~v~~~D~ryiRtll 134 (445)
T PF10428_consen 55 SRSSLEVLYNANSHIDQLVEALERFDSSSREDEPSPRVNENVIRACQTCISAFKHICSLLRKNLDVFVDNGDVRYIRTLL 134 (445)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q ss_pred HhHHHHHHHHhhhhHHHhHHHHHHHHHHHhhcCCCcchhhhhcccccccccccCCCCCCCCccccCCccccccc
Q 023768 198 QTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRVTFSPILEFTAN 271 (277)
Q Consensus 198 ~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~~~~~~~~q~~~s~ssrpalE~p~~tpssr~~s~pp~~~~~~ 271 (277)
..|=+.+.+|.. ++.-+.--++... .......-.....+.+++.+....+.+||..+-.+..+.+..-|
T Consensus 135 l~lygS~~Elrn----a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~tpt~~r~~~~~~~r~r~ 203 (445)
T PF10428_consen 135 LMLYGSIMELRN----AWSSLGPPNKASK-SPSSPKSPRSSSARQTSSSDHSRPRSRTPTRERRPSSSFRRLRS 203 (445)
T ss_pred HHHHHHHHHHHH----HHHHcCCcccccc-ccccCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 472
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.16 E-value=2e+02 Score=24.58 Aligned_cols=60 Identities=12% Similarity=0.258 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kl--de~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
..|..-...+..++..+...+...+ ..+..+...+ ++..+.+.+.+.++.++...+..++
T Consensus 75 ~~ld~ei~~L~~el~~l~~~~k~l~----~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 75 AELDAEIKELREELAELKKEVKSLE----AELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554444443333 3333343333 3333344444445544444444443
No 473
>PRK09039 hypothetical protein; Validated
Probab=30.14 E-value=5.2e+02 Score=25.11 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=8.9
Q ss_pred ccchhHhhhhHHH
Q 023768 27 LSSVSDAVGGTLK 39 (277)
Q Consensus 27 L~d~~~~l~g~~k 39 (277)
-|-|.|.++.++=
T Consensus 16 wpg~vd~~~~ll~ 28 (343)
T PRK09039 16 WPGFVDALSTLLL 28 (343)
T ss_pred CchHHHHHHHHHH
Confidence 5677777777654
No 474
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=30.04 E-value=1.2e+02 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=27.7
Q ss_pred ecccCCCchHHHhhhhH---HHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Q 023768 110 WKGWKLPDMMFATRRSL---SDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 110 WKG~s~SDlM~VTkr~m---~~Av~sv~kqLeqVs~sL~~tKkhLsqRId 156 (277)
||--|+++|--+|--+. .+..-=-.++++.+-..|..-|..|..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred cccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877776652 222211234666666666666665555544
No 475
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=29.79 E-value=5.5e+02 Score=25.27 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=5.7
Q ss_pred HHHHhhhchhhhhhHH
Q 023768 175 EVTILRGRSKLIGDEF 190 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv 190 (277)
||.+++.-+..++..+
T Consensus 290 ElDe~~krL~ELrR~v 305 (320)
T TIGR01834 290 ELDEAHQRIQQLRREV 305 (320)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 476
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.63 E-value=3e+02 Score=22.12 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
-+..|+..+..||.++..++.+.+....-+.-+.+-++.
T Consensus 68 ~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 68 AIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777888888888877777777766655543
No 477
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.62 E-value=4.1e+02 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=41.2
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
+.|..+-..-+.+..++.+++..|...++.+.++|+..-+++....+-+..+-+++..+
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778888888888888888888888888887766665555444444444455443
No 478
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=29.56 E-value=2.2e+02 Score=29.08 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~----eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
.|...+|.+..+.+.+-.+.++....++.... +..++..++..+..++..+......++.++..+
T Consensus 33 ~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ 101 (429)
T COG0172 33 ELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTL 101 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 479
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=29.55 E-value=9.5e+02 Score=29.20 Aligned_cols=104 Identities=23% Similarity=0.313 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
++.+..-+..|-.+....-.+-.++|+.+.+||+-+.+.+.+.+.= .++++..++.=......++...+..|..+..
T Consensus 775 ~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~ 851 (1822)
T KOG4674|consen 775 QESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELES 851 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHhHHHHHHHHHHHhhc
Q 023768 203 KLIEIEGKQDITTLGVKKLCDRARELE 229 (277)
Q Consensus 203 Ki~~ie~kQd~tn~GV~~Lc~~~~~~~ 229 (277)
.+..+-.--.-.-.-+.-|-.-+..++
T Consensus 852 ~~~~~~~~l~~~~~~~~~le~k~~eL~ 878 (1822)
T KOG4674|consen 852 ELKSLLTSLDSVSTNIAKLEIKLSELE 878 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.47 E-value=2.9e+02 Score=25.37 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh--hhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL--IGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~--i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.|...|.++..|+...+.....+..|+-+++..++. +...++.++..|.+.+.||..+-..
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 481
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=29.46 E-value=3.7e+02 Score=29.95 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred ccCCCchHHHhhh-------------hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 112 GWKLPDMMFATRR-------------SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 112 G~s~SDlM~VTkr-------------~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
+..++|+.=.+|| ++++..-.|.++|.++++ .-+|-|-.-+-+.-+++++-.++...+-+.-..
T Consensus 370 L~~~pdi~rl~~~l~~~~L~d~~r~yq~~~~l~~~~~~l~~~~~---~~~~ll~~~l~~~~~~~~kf~~~ve~t~D~da~ 446 (902)
T KOG0219|consen 370 LRRIPDISRLARRLMKANLQDVNRIYQAAKLLPTVVQVLISLSE---SHNRLLKSPLTEHLKKLEKFQEMVETTVDLDAE 446 (902)
T ss_pred hhcChhHHHhhhhhhhcchHHHHHHHHHHHHhHHHHHHHHhhhh---hhhhhhhhhhhhhhhhHHHHHHHHHHHhhHhHH
Q ss_pred hhhchhh------hhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 179 LRGRSKL------IGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 179 i~~dv~~------i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
-. .+ |..++..|+++...|+.||.+...+.
T Consensus 447 ee---~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~hkrv 482 (902)
T KOG0219|consen 447 EE---NEYRVRVDFDEELQELREKLDELERKMEKLHKKV 482 (902)
T ss_pred hc---CcEEEecccCHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>PRK04325 hypothetical protein; Provisional
Probab=29.41 E-value=2.5e+02 Score=21.50 Aligned_cols=53 Identities=8% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 142 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 142 ~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
.++..-=.+|.-|+...++++|+.+++.-.=++++..++.-+..+.+-++.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 483
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.40 E-value=6e+02 Score=26.64 Aligned_cols=89 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHH-hHhhhhhhHHHHHHHHHHH----------HHHHHHhhhchhhhhhHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSS-KITSVDRDVNKIVEISQAT----------QEEVTILRGRSKLIGDEFQ 191 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsq-RId~vD~klde~~ei~~~i----------q~eV~~i~~dv~~i~~dv~ 191 (277)
+|||..+..----+|-+.--.+..-|-.+.- ||..-..+|-+...-...| +.|+.+++.....-..|++
T Consensus 247 ~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~ 326 (554)
T KOG4677|consen 247 FRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSA 326 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHH
Q ss_pred HHHHHHHhHHHHHHHHhhhh
Q 023768 192 SVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 192 ~v~~~V~~Le~Ki~~ie~kQ 211 (277)
.++.-+..|+..|..||+.|
T Consensus 327 ~~q~q~~~Lrs~~~d~EAq~ 346 (554)
T KOG4677|consen 327 HIQDQYTLLRSQIIDIEAQD 346 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 484
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=29.39 E-value=91 Score=27.17 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCcchhhhHHhhhhheeeEEecccCCCchH------HHhhhhHHHHHHHH
Q 023768 61 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMM------FATRRSLSDACNSV 133 (277)
Q Consensus 61 l~aQV~~L~~El~~L-sr~iTvvn~~~sg~g~~~~~~iv~iGavGYgYmwWKG~s~SDlM------~VTkr~m~~Av~sv 133 (277)
|.+|+..|+.-+..+ .---|+=+.. +-++++ -..|=+|+=.|.|.--++- .+++ |.-.++..+|.+.+
T Consensus 25 L~~~i~~l~~~~~e~~~~~~tl~~lk--~~~~g~-E~LVpvGag~fv~~kv~~~--~kviV~iGsg~~ae~~~~eAie~l 99 (145)
T COG1730 25 LQAQIAALNAAISELQTAIETLENLK--GAGEGK-EVLVPVGAGLFVKAKVKDM--DKVIVSIGSGYYAEKSADEAIEFL 99 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCc-eEEEEcCCCceEEEEeccC--ceEEEEcCCceeeeecHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~e 175 (277)
-|..+.+..++......|..--+....-..+..+++......
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~ 141 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAA 141 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.36 E-value=2.2e+02 Score=27.33 Aligned_cols=68 Identities=10% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 216 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~ 216 (277)
++|-++++....++....+-.+...++.+.....+..+..+++.++.....++..+++++...+..+.
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTEETKR 69 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
No 486
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=29.34 E-value=5.1e+02 Score=24.74 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (277)
.++|..-...|.+-++.++.++.+ ++....+-.-+..+.+..+..++..++..+..|..++..+.+.-.........
T Consensus 9 l~~L~~Ep~~L~~~~~~l~~ql~~---La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~ 85 (338)
T PF04124_consen 9 LESLFSEPQSLSEEIASLDAQLQS---LAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQK 85 (338)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 023768 221 LCD 223 (277)
Q Consensus 221 Lc~ 223 (277)
+.+
T Consensus 86 ~~~ 88 (338)
T PF04124_consen 86 ISE 88 (338)
T ss_pred HHH
No 487
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=29.23 E-value=2.7e+02 Score=25.82 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=0.0
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
|-|.-.||.|++++..+++.|-.++..-..+-.+.=..+..+-.++++. -..+-.+|...+.+-+...-.++++++.+
T Consensus 47 ~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~lae~~Ek~~~l--~~r~A~~d~~~L~e~L~~Y~r~~~A~K~l 124 (218)
T cd07663 47 DKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKVAELFEKLRKV--EDRVASDQDLKLTELLRYYMLNIEAAKDL 124 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHH--HHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 023768 197 V 197 (277)
Q Consensus 197 V 197 (277)
+
T Consensus 125 l 125 (218)
T cd07663 125 L 125 (218)
T ss_pred H
No 488
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.08 E-value=1.6e+02 Score=21.47 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=0.0
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhh
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 186 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i 186 (277)
...++.+.++.+..++++..+-....+.++..++.|-+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~i 57 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYI 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
No 489
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=28.95 E-value=4.4e+02 Score=27.01 Aligned_cols=83 Identities=10% Similarity=0.143 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhhhhhhHHH-----HHHHHHHHHHHHHHhhh-----chhhhhhH
Q 023768 122 TRRSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRDVNK-----IVEISQATQEEVTILRG-----RSKLIGDE 189 (277)
Q Consensus 122 Tkr~m~~Av~sv~--kqLeqVs~sL~~tKkhLsqRId~vD~klde-----~~ei~~~iq~eV~~i~~-----dv~~i~~d 189 (277)
++..+..+.+... ..-|..-.....+|.+|..-|-.+.+++++ ..+--+.+++.+++..+ |...+...
T Consensus 499 s~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~d~~~i~~~ 578 (595)
T TIGR02350 499 SEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAK 578 (595)
T ss_pred CHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHHHHHHHHhHHHHH
Q 023768 190 FQSVRDIVQTLESKL 204 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki 204 (277)
.+.++..+..++.|+
T Consensus 579 ~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 579 TEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHH
No 490
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.79 E-value=8.8e+02 Score=27.93 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
++|.+|-++=..-|..+--.|..+|+.+.+--.....+.++ -+.++-+++++...++.-...+.++...++.|+.+
T Consensus 776 ~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e----~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e 851 (1174)
T KOG0933|consen 776 KKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE----YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSE 851 (1174)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhHHHhHHHHHHHHHHHhhcC
Q 023768 204 LIEIEGKQDITTLGVKKLCDRARELEN 230 (277)
Q Consensus 204 i~~ie~kQd~tn~GV~~Lc~~~~~~~~ 230 (277)
++.++++.+-.-.-+..+-+-+...+.
T Consensus 852 ~~~l~~kv~~~~~~~~~~~~el~~~k~ 878 (1174)
T KOG0933|consen 852 LGNLEAKVDKVEKDVKKAQAELKDQKA 878 (1174)
T ss_pred HHHHHHHHHhHHhHHHHHHHHHHHHHH
No 491
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.68 E-value=82 Score=24.77 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
+|+..++ .+++++|.|.+++|.-++
T Consensus 15 ~dfne~~-------kRLdeieekvef~~~Ev~ 39 (75)
T COG4064 15 DDFNEIH-------KRLDEIEEKVEFVNGEVY 39 (75)
T ss_pred HHHHHHH-------HHHHHHHHHHHhhHHHHH
No 492
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=28.56 E-value=64 Score=25.17 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhHHHh
Q 023768 188 DEFQSVRDIVQTLESKLIEIEGKQDITT 215 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (277)
.|+..++ .|++.+|+|.+++|
T Consensus 12 ~d~~~i~-------~rLd~iEeKVEf~~ 32 (70)
T TIGR01149 12 DEFNEVM-------KRLDEIEEKVEFVN 32 (70)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHH
No 493
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=28.44 E-value=4.6e+02 Score=24.83 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=0.0
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhhchhhhhhHHHHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~-ei~~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
+.|-++...++ ..-..+-.+...+...|+.|...-+.+...+.... .+.+.+++...++..++.+.-+.++..
T Consensus 166 ie~~l~~~~~~------~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~ 239 (322)
T COG0598 166 IEDQLLASTTN------EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEAL 239 (322)
T ss_pred HHHHHhcCccH------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHH
Q 023768 194 RDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 225 (277)
Q Consensus 194 ~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~ 225 (277)
+++++.|=.-..++-.++.-....+--+.-.+
T Consensus 240 ~~~l~~l~d~~~s~is~~~N~imk~LTi~s~i 271 (322)
T COG0598 240 RERLSSLLDAYLSLINNNQNEIMKILTIVSTI 271 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.42 E-value=4.5e+02 Score=23.83 Aligned_cols=97 Identities=9% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHH----HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH-HHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 126 LSDACNSVARQLEDVY----SSISAAQRQLSSKITSVDRDVNKIVEISQATQ-EEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs----~sL~~tKkhLsqRId~vD~klde~~ei~~~iq-~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
+.++-.++...|++.- ..+..+||++..--+..|.-+++...+++..+ .+|.++..++..-+.- .++.--.+
T Consensus 83 ~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~~~~~ea~~~l~~~R~~---F~~~~ldy 159 (202)
T cd07606 83 RSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKPEILAAAEEDLGTTRSA---FETARFDL 159 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_pred HHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 201 ESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 201 e~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
--+|..++++-.+ ..+..|+.|++.
T Consensus 160 v~~ln~~q~kKk~--e~le~ll~~m~A 184 (202)
T cd07606 160 MNRLHAADARKRV--EFLERLSGSMDA 184 (202)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHH
No 495
>PRK11020 hypothetical protein; Provisional
Probab=28.33 E-value=2.7e+02 Score=23.72 Aligned_cols=55 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
++-..|.++++.|...++.|..-+.+=|..+ +..+..-+..|+.+|.++-.+|
T Consensus 2 ~~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~---------------------------i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 2 VEKNEIKRLSDRLDAIRHKLAAASLRGDAEK---------------------------YAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH---------------------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH
Q 023768 212 DI 213 (277)
Q Consensus 212 d~ 213 (277)
.+
T Consensus 55 ~~ 56 (118)
T PRK11020 55 SQ 56 (118)
T ss_pred HH
No 496
>PHA03332 membrane glycoprotein; Provisional
Probab=28.28 E-value=1.6e+02 Score=33.53 Aligned_cols=80 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 023768 114 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 114 s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
+++|-.+=+...+.+--+.+-+.++.|..+|.+-..|+.+|+..+++.++. +..+.++++++...-++.-....-.-
T Consensus 909 ~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~int---LA~ql~~~~~~~N~~ie~~~aaalyY 985 (1328)
T PHA03332 909 KTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNT---LATQLKELGTTTNERIEEVMAAALYY 985 (1328)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 023768 194 RDI 196 (277)
Q Consensus 194 ~~~ 196 (277)
|++
T Consensus 986 QQl 988 (1328)
T PHA03332 986 QQL 988 (1328)
T ss_pred HHH
No 497
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=28.24 E-value=4.4e+02 Score=23.66 Aligned_cols=87 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
|.......+.+.++++++...+...+..|..==..+..--.+...+....+.--...+..-.--+.|+.+-...+..+|.
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ 173 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYER 173 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Q ss_pred HHHHHhh
Q 023768 203 KLIEIEG 209 (277)
Q Consensus 203 Ki~~ie~ 209 (277)
|+.++|.
T Consensus 174 ki~~~ea 180 (219)
T TIGR02977 174 RVDELEA 180 (219)
T ss_pred HHHHHHH
No 498
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=28.23 E-value=19 Score=35.82 Aligned_cols=15 Identities=40% Similarity=0.720 Sum_probs=0.0
Q ss_pred eeeEccCccceeecc
Q 023768 9 TFLVGAGILTSVLAK 23 (277)
Q Consensus 9 ~iLvGAG~~GSvl~k 23 (277)
.|+||||+.|+|+++
T Consensus 4 ~lIVGaGlsG~V~A~ 18 (374)
T COG0562 4 YLIVGAGLSGAVIAE 18 (374)
T ss_pred EEEECCchhHHHHHH
No 499
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=28.19 E-value=77 Score=31.21 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
+|+..=+..++.+.+.++++++...|+..+..|.++- +...++.+..+-.....+++.+++..+..-++++
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~ 303 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEI 303 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEE
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
No 500
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=28.15 E-value=5.1e+02 Score=27.34 Aligned_cols=91 Identities=10% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhhhhhhHHH-----HHHHHHHHHHHHHHhhh-----chhhhhhH
Q 023768 122 TRRSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRDVNK-----IVEISQATQEEVTILRG-----RSKLIGDE 189 (277)
Q Consensus 122 Tkr~m~~Av~sv~--kqLeqVs~sL~~tKkhLsqRId~vD~klde-----~~ei~~~iq~eV~~i~~-----dv~~i~~d 189 (277)
+...+..+.+... +.-|..-.....+|.+|..-|-.+.+++++ ..+-.+.+++.+.+.++ |.+.|...
T Consensus 542 s~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~d~~~i~~k 621 (663)
T PTZ00400 542 SDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDK 621 (663)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhH
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
.+.++.....|+.|+..-...|+
T Consensus 622 ~~eL~~~l~~l~~k~y~~~~~~~ 644 (663)
T PTZ00400 622 TKQLQEASWKISQQAYKQGNSDN 644 (663)
T ss_pred HHHHHHHHHHHHHHHHhhhcccc
Done!