Query 023768
Match_columns 277
No_of_seqs 69 out of 71
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 12:29:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 93.7 0.13 4.4E-06 40.0 5.8 77 120-208 8-84 (85)
2 3ghg_A Fibrinogen alpha chain; 91.3 2.2 7.4E-05 42.8 12.5 104 115-218 51-164 (562)
3 2no2_A HIP-I, huntingtin-inter 90.7 3.4 0.00012 32.9 11.0 79 131-209 11-96 (107)
4 1m1j_B Fibrinogen beta chain; 90.2 2.9 9.9E-05 41.1 12.1 96 115-210 87-190 (464)
5 3oja_A Leucine-rich immune mol 89.2 2.6 8.8E-05 39.8 10.7 66 158-223 412-477 (487)
6 3g67_A Methyl-accepting chemot 88.7 7.4 0.00025 34.1 12.6 39 126-164 5-43 (213)
7 3g67_A Methyl-accepting chemot 88.3 4.9 0.00017 35.3 11.1 69 132-200 4-72 (213)
8 3mq9_A Bone marrow stromal ant 87.5 8.6 0.00029 36.0 13.1 76 125-201 356-431 (471)
9 3okq_A BUD site selection prot 87.2 9.4 0.00032 32.1 11.6 80 143-222 11-110 (141)
10 1deq_A Fibrinogen (alpha chain 86.8 5.8 0.0002 38.3 11.4 95 115-209 54-155 (390)
11 1fxk_C Protein (prefoldin); ar 85.4 1.3 4.5E-05 35.3 5.4 54 99-183 72-125 (133)
12 3oja_B Anopheles plasmodium-re 84.9 8.2 0.00028 37.0 11.6 96 124-219 459-568 (597)
13 4aj5_A SKA1, spindle and kinet 84.3 9.3 0.00032 30.0 9.5 44 180-227 36-79 (91)
14 3o0z_A RHO-associated protein 83.2 19 0.00064 31.0 11.9 83 122-208 56-138 (168)
15 4dnd_A Syntaxin-10, SYN10; str 83.1 3.1 0.00011 34.1 6.8 29 122-150 68-96 (130)
16 2akf_A Coronin-1A; coiled coil 82.9 1.7 6E-05 27.7 4.0 29 184-212 2-30 (32)
17 1deq_A Fibrinogen (alpha chain 82.9 4.8 0.00016 38.9 8.9 94 61-191 65-158 (390)
18 3na7_A HP0958; flagellar bioge 82.5 6.2 0.00021 34.9 9.0 23 186-208 95-117 (256)
19 3trt_A Vimentin; cytoskeleton, 82.3 9.6 0.00033 27.7 8.6 66 125-190 6-72 (77)
20 2xdj_A Uncharacterized protein 81.8 6.3 0.00022 30.1 7.6 52 152-203 5-56 (83)
21 3onj_A T-snare VTI1; helix, HA 81.6 6.6 0.00023 30.3 7.8 53 124-179 8-60 (97)
22 2zdi_C Prefoldin subunit alpha 81.4 3.9 0.00013 33.4 6.9 53 99-182 82-134 (151)
23 2qyw_A Vesicle transport throu 81.1 4.8 0.00016 31.4 6.9 61 117-180 15-76 (102)
24 3hnw_A Uncharacterized protein 81.0 19 0.00066 29.6 10.9 63 151-213 73-135 (138)
25 1m1j_B Fibrinogen beta chain; 80.7 17 0.00058 35.7 12.1 11 65-75 23-33 (464)
26 1vcs_A Vesicle transport throu 80.1 2.2 7.7E-05 33.3 4.7 61 117-180 5-65 (102)
27 3ghg_C Fibrinogen gamma chain; 79.8 36 0.0012 32.9 13.9 33 116-148 26-58 (411)
28 1kmi_Z CHEZ, chemotaxis protei 79.8 21 0.00072 31.3 11.4 109 124-232 26-163 (214)
29 1c1g_A Tropomyosin; contractIl 79.7 23 0.00079 28.8 13.6 26 179-204 74-99 (284)
30 4abx_A DNA repair protein RECN 79.1 7.9 0.00027 32.3 8.1 92 114-209 67-164 (175)
31 2w83_C C-JUN-amino-terminal ki 78.8 10 0.00035 28.9 7.8 65 124-209 5-72 (77)
32 1m1j_A Fibrinogen alpha subuni 78.8 21 0.00071 35.3 11.9 107 111-217 48-164 (491)
33 3tnu_B Keratin, type II cytosk 78.6 5.7 0.00019 31.9 6.8 51 153-206 43-93 (129)
34 2yo3_A General control protein 78.1 4.1 0.00014 37.5 6.4 57 137-207 200-256 (268)
35 1ic2_A Tropomyosin alpha chain 78.0 16 0.00055 27.1 8.7 39 172-210 25-63 (81)
36 3mq9_A Bone marrow stromal ant 78.0 21 0.00073 33.3 11.6 40 125-164 370-415 (471)
37 3c9i_A Tail needle protein GP2 75.4 9.4 0.00032 34.3 7.8 97 113-210 36-141 (242)
38 3tnu_A Keratin, type I cytoske 75.3 6.3 0.00022 31.8 6.2 71 133-206 22-95 (131)
39 3zx6_A HAMP, methyl-accepting 74.6 50 0.0017 30.0 14.7 12 217-228 284-295 (341)
40 1m1j_C Fibrinogen gamma chain; 74.5 27 0.00093 33.6 11.4 32 117-148 27-58 (409)
41 2jee_A YIIU; FTSZ, septum, coi 74.1 26 0.00089 26.8 9.0 65 155-219 8-72 (81)
42 1l8d_A DNA double-strand break 74.0 27 0.00092 26.6 9.8 34 129-162 4-40 (112)
43 3htk_A Structural maintenance 72.2 14 0.00047 25.6 6.6 29 172-200 24-52 (60)
44 3ghg_A Fibrinogen alpha chain; 71.7 27 0.00092 35.1 10.8 48 140-187 51-102 (562)
45 1n7s_D SNAP-25A; neuronal snar 71.7 23 0.00078 25.0 7.8 55 150-218 7-61 (66)
46 3a7p_A Autophagy protein 16; c 71.0 47 0.0016 28.1 11.2 68 139-220 68-136 (152)
47 3htk_A Structural maintenance 70.6 16 0.00055 25.2 6.7 25 173-197 32-56 (60)
48 3plt_A Sphingolipid long chain 70.4 61 0.0021 29.2 12.0 83 127-213 61-149 (234)
49 1gl2_D Syntaxin 8, vesicle tra 69.8 11 0.00039 26.6 5.8 51 153-217 9-59 (65)
50 4dnd_A Syntaxin-10, SYN10; str 69.7 44 0.0015 27.2 10.3 98 108-209 18-126 (130)
51 1sfc_D Protein (SNAP-25B), pro 68.9 26 0.00089 26.3 8.0 34 186-219 48-81 (87)
52 3u59_A Tropomyosin beta chain; 68.8 37 0.0013 26.1 10.2 79 150-228 20-98 (101)
53 1m1j_A Fibrinogen alpha subuni 68.6 29 0.00099 34.3 10.1 66 125-190 90-155 (491)
54 3zx6_A HAMP, methyl-accepting 67.9 71 0.0024 29.0 14.7 9 61-69 11-19 (341)
55 3ghg_C Fibrinogen gamma chain; 67.8 52 0.0018 31.8 11.6 91 140-230 25-133 (411)
56 3u1c_A Tropomyosin alpha-1 cha 66.8 42 0.0014 25.9 10.5 69 153-221 23-91 (101)
57 3cve_A Homer protein homolog 1 66.5 28 0.00094 26.1 7.5 15 195-209 46-60 (72)
58 1m1j_C Fibrinogen gamma chain; 66.4 82 0.0028 30.3 12.8 44 185-228 88-131 (409)
59 2l5g_B Putative uncharacterize 66.2 4.5 0.00015 27.6 2.8 21 147-167 3-23 (42)
60 4ioe_A Secreted protein ESXB; 65.4 35 0.0012 24.4 9.0 30 130-159 14-43 (93)
61 1ses_A Seryl-tRNA synthetase; 65.3 25 0.00084 33.5 8.9 60 144-209 33-92 (421)
62 3efg_A Protein SLYX homolog; x 65.2 10 0.00035 28.5 5.0 54 148-208 9-62 (78)
63 2jee_A YIIU; FTSZ, septum, coi 65.2 37 0.0013 25.9 8.1 31 175-205 49-79 (81)
64 1sfc_D Protein (SNAP-25B), pro 64.8 32 0.0011 25.8 7.8 59 149-207 25-83 (87)
65 3gwk_C SAG1039, putative uncha 64.1 39 0.0013 24.6 10.5 29 136-164 12-40 (98)
66 2dq0_A Seryl-tRNA synthetase; 64.0 25 0.00086 33.9 8.7 65 144-212 36-100 (455)
67 1t3j_A Mitofusin 1; coiled coi 63.6 21 0.00073 28.1 6.7 17 146-162 47-63 (96)
68 2dfs_A Myosin-5A; myosin-V, in 63.5 58 0.002 34.9 12.1 12 124-135 924-935 (1080)
69 2v71_A Nuclear distribution pr 61.7 81 0.0028 27.4 13.5 84 135-218 45-132 (189)
70 4i0x_B ESAT-6-like protein MAB 61.6 48 0.0016 24.8 8.7 32 135-166 14-45 (103)
71 2nps_D Syntaxin-6; vesicle fus 61.4 25 0.00086 26.0 6.5 40 184-223 36-75 (82)
72 2nps_D Syntaxin-6; vesicle fus 61.2 20 0.00069 26.5 6.0 58 152-209 18-75 (82)
73 3cvf_A Homer-3, homer protein 61.1 28 0.00095 26.5 6.7 47 150-196 24-70 (79)
74 1gl2_D Syntaxin 8, vesicle tra 60.7 22 0.00074 25.1 5.8 47 134-184 8-54 (65)
75 3cvf_A Homer-3, homer protein 60.7 34 0.0012 26.0 7.2 61 146-209 6-66 (79)
76 3ci9_A Heat shock factor-bindi 59.7 18 0.00061 25.1 5.0 41 125-165 3-43 (48)
77 1wle_A Seryl-tRNA synthetase; 59.5 36 0.0012 33.5 9.0 85 123-210 47-145 (501)
78 3swy_A Cyclic nucleotide-gated 57.9 22 0.00075 24.5 5.2 36 126-161 10-45 (46)
79 3zbh_A ESXA; unknown function, 57.5 50 0.0017 23.7 11.1 29 136-164 13-41 (99)
80 3zbh_A ESXA; unknown function, 57.5 50 0.0017 23.7 10.5 32 129-160 13-44 (99)
81 2dq3_A Seryl-tRNA synthetase; 56.9 23 0.00077 33.8 7.0 65 144-212 35-99 (425)
82 3u59_A Tropomyosin beta chain; 56.5 65 0.0022 24.7 12.0 15 189-203 45-59 (101)
83 4h22_A Leucine-rich repeat fli 56.5 74 0.0025 25.3 9.0 62 144-205 21-82 (103)
84 2q6q_A Spindle POLE BODY compo 56.0 46 0.0016 25.0 7.0 57 148-204 5-61 (74)
85 3m0a_A TNF receptor-associated 55.8 50 0.0017 23.2 7.8 58 151-208 3-60 (66)
86 3swf_A CGMP-gated cation chann 55.6 35 0.0012 25.7 6.4 39 126-164 12-50 (74)
87 3kkj_A Amine oxidase, flavin-c 54.9 2.5 8.4E-05 32.7 -0.1 14 9-22 5-18 (336)
88 3cve_A Homer protein homolog 1 54.7 64 0.0022 24.1 7.7 39 126-164 19-57 (72)
89 2nps_B Syntaxin 13, vesicle-as 54.6 30 0.001 24.9 5.8 45 174-218 6-50 (71)
90 4ioe_A Secreted protein ESXB; 54.4 56 0.0019 23.3 10.0 31 135-165 12-42 (93)
91 2c5k_T Syntaxin TLG1, T-snare 53.9 45 0.0015 25.7 7.0 73 128-210 10-90 (95)
92 2c5k_T Syntaxin TLG1, T-snare 53.8 24 0.00083 27.2 5.5 29 122-150 37-65 (95)
93 3hnw_A Uncharacterized protein 53.7 78 0.0027 25.9 8.8 49 158-206 87-135 (138)
94 3vkg_A Dynein heavy chain, cyt 53.3 73 0.0025 38.3 11.5 21 128-148 2014-2034(3245)
95 3qne_A Seryl-tRNA synthetase, 53.1 66 0.0023 31.6 9.7 65 144-212 38-102 (485)
96 1jth_B Syntaxin 1A; coiled-coi 53.0 53 0.0018 23.8 7.0 53 173-225 9-65 (77)
97 3s84_A Apolipoprotein A-IV; fo 52.4 71 0.0024 28.8 9.2 24 167-190 209-232 (273)
98 3gwk_C SAG1039, putative uncha 52.2 64 0.0022 23.3 9.9 77 129-205 12-93 (98)
99 3v86_A De novo design helix; c 52.2 12 0.00041 22.9 2.7 24 170-193 3-26 (27)
100 2xzr_A Immunoglobulin-binding 51.6 91 0.0031 24.9 10.3 38 126-163 32-69 (114)
101 3b5n_B Protein SSO1; snare com 51.4 61 0.0021 23.1 7.0 46 173-218 9-54 (69)
102 1wle_A Seryl-tRNA synthetase; 51.4 1.2E+02 0.0041 29.8 11.2 33 189-221 117-149 (501)
103 1n7s_B Syntaxin 1A; neuronal s 51.3 62 0.0021 22.9 7.0 47 173-219 11-57 (68)
104 3vkg_A Dynein heavy chain, cyt 50.8 78 0.0027 38.1 11.2 15 172-186 2033-2047(3245)
105 1gl2_B Syntaxin 7; membrane pr 50.2 43 0.0015 23.7 6.0 47 174-220 9-55 (65)
106 1i84_S Smooth muscle myosin he 50.0 33 0.0011 36.7 7.5 22 24-45 652-673 (1184)
107 3ol1_A Vimentin; structural ge 50.0 93 0.0032 24.6 10.8 70 144-213 32-101 (119)
108 1l4a_D S-SNAP25 fusion protein 48.2 57 0.0019 24.6 6.7 32 188-219 51-82 (87)
109 3qne_A Seryl-tRNA synthetase, 47.7 44 0.0015 32.8 7.4 70 153-222 33-105 (485)
110 3oja_A Leucine-rich immune mol 47.2 40 0.0014 31.6 6.9 36 172-207 433-468 (487)
111 1t3j_A Mitofusin 1; coiled coi 45.4 66 0.0022 25.3 6.7 23 139-161 29-51 (96)
112 3fav_B ESAT-6, 6 kDa early sec 45.4 67 0.0023 23.1 6.6 26 137-162 10-35 (94)
113 1n7s_D SNAP-25A; neuronal snar 45.4 76 0.0026 22.2 7.6 46 134-183 9-54 (66)
114 3trt_A Vimentin; cytoskeleton, 45.3 82 0.0028 22.6 8.7 69 140-208 7-76 (77)
115 3c9i_A Tail needle protein GP2 45.3 85 0.0029 28.2 8.2 44 166-209 104-147 (242)
116 1sfc_B Protein (syntaxin 1A), 44.9 91 0.0031 23.0 7.3 50 169-218 16-65 (83)
117 2xdj_A Uncharacterized protein 44.2 90 0.0031 23.6 7.2 30 171-200 31-60 (83)
118 3nmd_A CGMP dependent protein 43.7 65 0.0022 24.1 6.2 47 131-178 16-65 (72)
119 2l3l_A Tubulin-specific chaper 43.6 1.2E+02 0.0041 23.9 9.7 73 135-209 31-105 (111)
120 1ic2_A Tropomyosin alpha chain 43.6 95 0.0032 22.8 9.5 60 150-209 17-76 (81)
121 3kpe_A Fusion glycoprotein F0; 43.3 52 0.0018 23.1 5.3 39 160-198 4-42 (51)
122 3ghg_B Fibrinogen beta chain; 42.8 1.6E+02 0.0056 28.9 10.5 37 115-151 82-118 (461)
123 3na7_A HP0958; flagellar bioge 42.0 1.7E+02 0.006 25.4 11.8 15 61-75 58-72 (256)
124 3hd7_B Syntaxin-1A; membrane p 41.6 1.1E+02 0.0036 23.8 7.5 55 164-218 11-65 (109)
125 3fav_A ESAT-6-like protein ESX 41.4 1E+02 0.0035 22.5 7.4 26 137-162 12-37 (101)
126 1d7m_A Cortexillin I; coiled-c 41.4 1.2E+02 0.0042 23.8 7.6 13 143-155 22-34 (101)
127 3pp5_A BRK1, protein brick1; t 40.5 1.1E+02 0.0037 23.0 6.9 14 193-206 57-70 (73)
128 2yo3_A General control protein 40.5 79 0.0027 29.0 7.5 65 117-181 194-258 (268)
129 2z0v_A SH3-containing GRB2-lik 40.4 72 0.0025 27.6 7.0 15 61-75 20-34 (240)
130 2b9c_A Striated-muscle alpha t 40.1 1.6E+02 0.0054 24.3 10.9 67 152-218 51-117 (147)
131 3zcc_A HAMP, osmolarity sensor 40.1 92 0.0031 21.6 8.2 18 168-185 67-84 (114)
132 2v66_B Nuclear distribution pr 39.9 1.4E+02 0.0049 23.8 9.9 42 176-217 37-78 (111)
133 3haj_A Human pacsin2 F-BAR; pa 39.8 1.6E+02 0.0054 28.1 9.9 37 121-157 129-165 (486)
134 2pnv_A Small conductance calci 39.7 53 0.0018 22.2 4.7 29 139-167 9-37 (43)
135 1l4a_D S-SNAP25 fusion protein 38.8 74 0.0025 23.9 6.0 57 148-204 25-81 (87)
136 1gl2_C VTI1B, vesicle transpor 38.6 89 0.0031 22.2 6.1 53 153-205 2-54 (65)
137 1fzc_A Fibrin; blood coagulati 38.4 31 0.0011 26.8 3.8 28 149-176 3-30 (87)
138 3lss_A Seryl-tRNA synthetase; 38.1 99 0.0034 30.3 8.3 28 144-174 42-69 (484)
139 2xz3_A Maltose ABC transporter 37.2 51 0.0017 30.6 5.9 39 183-221 381-419 (463)
140 3mts_A Histone-lysine N-methyl 37.2 16 0.00056 26.1 1.9 42 106-148 18-59 (64)
141 1i84_S Smooth muscle myosin he 36.7 1.2E+02 0.0041 32.4 9.2 8 16-23 585-592 (1184)
142 3gp4_A Transcriptional regulat 36.4 1.6E+02 0.0055 23.5 8.1 10 109-118 56-65 (142)
143 1qu7_A Methyl-accepting chemot 36.3 2.1E+02 0.0071 24.6 12.9 15 61-75 71-85 (227)
144 3ghg_B Fibrinogen beta chain; 35.8 2.4E+02 0.0083 27.7 10.5 11 65-75 19-29 (461)
145 2vs0_A Virulence factor ESXA; 35.7 1.2E+02 0.004 21.5 8.5 29 136-164 10-38 (97)
146 1fxk_C Protein (prefoldin); ar 35.7 1.5E+02 0.0053 23.0 11.7 91 136-228 5-128 (133)
147 3b5n_D Protein transport prote 34.4 1.2E+02 0.0043 21.5 7.6 30 186-215 29-58 (64)
148 2xz3_A Maltose ABC transporter 33.6 1.2E+02 0.004 28.2 7.7 54 169-222 381-436 (463)
149 2i0m_A Phosphate transport sys 33.4 2E+02 0.0067 23.5 8.6 44 122-165 12-55 (216)
150 3oz2_A Digeranylgeranylglycero 33.4 8.6 0.0003 33.3 -0.1 13 9-21 7-19 (397)
151 2dfs_A Myosin-5A; myosin-V, in 32.9 4.5E+02 0.015 28.1 12.9 53 126-179 958-1010(1080)
152 3fx7_A Putative uncharacterize 32.8 1.8E+02 0.006 22.7 9.1 73 130-202 11-84 (94)
153 4aj5_K Spindle and kinetochore 32.5 2.1E+02 0.007 23.4 9.8 94 125-226 2-95 (123)
154 3uux_B Mitochondrial division 32.5 2.7E+02 0.0093 25.1 9.5 67 124-195 152-219 (242)
155 4i0x_B ESAT-6-like protein MAB 32.3 1.5E+02 0.0052 21.9 7.7 32 121-152 11-42 (103)
156 2nrj_A HBL B protein; enteroto 32.3 3E+02 0.01 25.3 11.3 15 61-75 62-76 (346)
157 3m0d_C TNF receptor-associated 31.2 1.4E+02 0.0048 21.2 7.1 15 194-208 47-61 (65)
158 1wt6_A Myotonin-protein kinase 30.6 1.8E+02 0.0062 22.2 7.1 30 171-200 28-57 (81)
159 4hb9_A Similarities with proba 30.4 10 0.00035 33.2 -0.1 13 9-21 4-16 (412)
160 3hrn_A Transient receptor pote 30.4 1.6E+02 0.0054 21.6 6.3 48 117-164 7-56 (64)
161 2wrg_I Hemagglutinin HA2 chain 30.4 48 0.0017 29.5 4.2 46 121-166 36-88 (222)
162 3ci9_A Heat shock factor-bindi 30.4 90 0.0031 21.5 4.7 32 131-162 16-47 (48)
163 3u1c_A Tropomyosin alpha-1 cha 30.1 1.9E+02 0.0063 22.2 11.9 23 184-206 40-62 (101)
164 2v71_A Nuclear distribution pr 30.0 2.7E+02 0.0093 24.1 14.6 103 126-228 22-135 (189)
165 1lwu_A Fibrinogen alpha-1 chai 29.9 65 0.0022 26.3 4.6 28 149-176 25-52 (119)
166 1lwu_C Fibrinogen gamma chain; 29.8 78 0.0027 29.5 5.8 15 194-208 39-53 (323)
167 4fla_A Regulation of nuclear P 29.8 2.4E+02 0.0082 23.4 9.0 37 137-173 70-106 (152)
168 3hd7_A Vesicle-associated memb 29.5 1.8E+02 0.0061 21.8 8.0 27 135-161 5-31 (91)
169 1mqm_B Hemagglutinin HA2 chain 29.3 22 0.00074 31.7 1.7 46 121-166 36-88 (221)
170 3kpe_A Fusion glycoprotein F0; 29.0 88 0.003 21.9 4.5 31 126-156 16-46 (51)
171 3rkg_A Magnesium transporter M 28.7 3.2E+02 0.011 24.5 11.9 37 126-164 132-168 (261)
172 2p32_A Heat shock 70 kDa prote 28.7 1.4E+02 0.0046 23.1 6.2 14 125-138 22-35 (120)
173 2bez_C E2 glycoprotein; coiled 28.5 1.9E+02 0.0066 21.9 9.0 26 125-150 13-38 (77)
174 2nrj_A HBL B protein; enteroto 28.5 2.1E+02 0.0071 26.4 8.4 40 122-161 91-131 (346)
175 1jsd_B Haemagglutinin (HA2 cha 28.3 66 0.0022 27.7 4.5 46 121-166 36-88 (176)
176 1aq5_A Matrilin-1, CMP, cartil 28.2 1.1E+02 0.0036 21.2 4.8 6 153-158 37-42 (47)
177 1j1d_B Troponin T, TNT; THIN f 28.0 1.5E+02 0.005 23.5 6.3 14 187-200 76-89 (106)
178 2vs0_A Virulence factor ESXA; 28.0 1.6E+02 0.0055 20.8 9.5 28 131-158 12-39 (97)
179 2d4y_A HAP1, flagellar HOOK-as 27.9 3.9E+02 0.013 25.1 11.0 44 121-164 64-107 (463)
180 2fxo_A Myosin heavy chain, car 27.7 2.3E+02 0.0078 22.4 9.2 67 128-194 58-124 (129)
181 2lf0_A Uncharacterized protein 27.4 1.5E+02 0.0051 24.3 6.3 54 151-213 8-61 (123)
182 3swk_A Vimentin; cytoskeleton, 27.2 2E+02 0.0067 21.6 10.4 67 147-213 15-81 (86)
183 3he5_B Synzip2; heterodimeric 27.2 1.4E+02 0.0047 20.6 5.1 24 185-208 21-44 (52)
184 3efg_A Protein SLYX homolog; x 27.0 1.1E+02 0.0039 22.7 5.2 45 149-193 17-61 (78)
185 3edv_A Spectrin beta chain, br 26.8 3E+02 0.01 23.6 11.5 14 61-74 44-57 (323)
186 2rft_B Influenza B hemagglutin 26.4 39 0.0013 29.1 2.8 46 121-166 36-88 (176)
187 2ke4_A CDC42-interacting prote 26.3 1.4E+02 0.0049 23.1 5.9 22 189-210 56-77 (98)
188 1xwj_B Talin, metavinculin; ce 26.1 41 0.0014 20.1 2.1 23 122-144 2-24 (26)
189 2p22_A Suppressor protein STP2 26.1 1.4E+02 0.0047 25.6 6.2 107 117-227 34-140 (174)
190 1e2b_A Enzyme IIB-cellobiose; 25.8 12 0.00039 29.0 -0.6 71 7-84 5-81 (106)
191 3abi_A Putative uncharacterize 25.6 13 0.00043 33.8 -0.4 16 7-23 18-33 (365)
192 1go4_E MAD1 (mitotic arrest de 25.2 92 0.0031 24.6 4.6 36 172-207 10-45 (100)
193 3t37_A Probable dehydrogenase; 24.8 15 0.00051 34.3 -0.1 15 9-23 20-34 (526)
194 2bbh_A Divalent cation transpo 24.5 1.3E+02 0.0046 25.6 6.0 67 134-202 174-240 (269)
195 3e7k_A TRPM7 channel; coiled-c 24.3 2E+02 0.0068 20.6 6.3 42 128-173 9-50 (56)
196 1sfc_A VAMP 2, protein (synapt 24.0 2.4E+02 0.0082 21.5 8.0 22 137-158 32-53 (96)
197 3i2w_A Syndapin, LD46328P; EFC 24.0 3.5E+02 0.012 23.3 10.1 39 121-159 114-152 (290)
198 1fgj_A Hydroxylamine oxidoredu 24.0 25 0.00084 34.9 1.2 10 104-113 462-471 (546)
199 2pnv_A Small conductance calci 23.9 77 0.0026 21.4 3.4 16 193-208 21-36 (43)
200 3nvo_A Zinc transport protein 23.9 53 0.0018 28.1 3.3 66 133-201 149-214 (264)
201 3q0x_A Centriole protein; cent 23.8 1.8E+02 0.0063 25.8 6.8 25 123-147 166-190 (228)
202 3s9v_A Abietadiene synthase, c 23.5 1.9E+02 0.0064 30.0 7.7 99 107-207 486-593 (785)
203 1lwu_C Fibrinogen gamma chain; 23.4 1.6E+02 0.0054 27.4 6.6 15 190-204 42-56 (323)
204 1ud0_A HSC70, 70 kDa heat-shoc 23.3 1.7E+02 0.0057 22.0 5.7 16 123-138 6-21 (113)
205 3m00_A Aristolochene synthase; 23.2 2.5E+02 0.0087 27.8 8.4 97 107-205 250-356 (550)
206 2vrs_A Sigma-C capsid protein; 23.1 61 0.0021 28.8 3.4 37 173-209 3-39 (211)
207 4ev6_A Magnesium transport pro 23.1 3.9E+02 0.013 23.9 9.1 19 125-143 168-186 (339)
208 1zww_A SH3-containing GRB2-lik 23.0 2.5E+02 0.0086 24.2 7.5 19 57-75 32-50 (256)
209 3nmd_A CGMP dependent protein 22.9 89 0.003 23.4 3.9 36 159-194 32-67 (72)
210 1hs7_A Syntaxin VAM3; UP-and-D 22.9 2.7E+02 0.0091 21.6 7.6 55 171-225 21-81 (97)
211 3a7p_A Autophagy protein 16; c 22.9 3.4E+02 0.012 22.8 11.7 42 124-165 64-105 (152)
212 1lq7_A Alpha3W; three helix bu 22.8 1.1E+02 0.0039 21.9 4.2 40 154-205 26-65 (67)
213 3p8q_A GP5, head protein; viru 22.8 18 0.00061 33.7 0.0 33 167-206 34-66 (385)
214 1l8d_A DNA double-strand break 22.4 2.5E+02 0.0085 21.0 9.0 37 168-204 65-101 (112)
215 1yvv_A Amine oxidase, flavin-c 22.3 18 0.00061 31.0 -0.1 13 9-21 5-17 (336)
216 3lss_A Seryl-tRNA synthetase; 22.2 2.9E+02 0.0098 27.0 8.4 20 190-209 113-132 (484)
217 4ack_A TSSL; protein transport 22.2 2.9E+02 0.01 24.0 7.5 62 165-227 10-71 (185)
218 1nkp_B MAX protein, MYC proto- 22.1 1.8E+02 0.0061 21.1 5.5 69 123-209 14-82 (83)
219 4dpv_Z Protein (parvovirus coa 22.0 26 0.00087 35.2 0.9 12 102-113 521-532 (584)
220 2ocy_A RAB guanine nucleotide 21.9 3.4E+02 0.012 22.8 7.7 14 61-74 18-31 (154)
221 2z5i_A TM, general control pro 21.7 1.5E+02 0.005 20.5 4.6 30 149-178 15-44 (52)
222 4f23_A Hemagglutinin, H16; sia 21.6 77 0.0026 31.6 4.2 48 119-166 368-422 (515)
223 1q08_A Zn(II)-responsive regul 21.6 1.6E+02 0.0054 21.4 5.1 17 153-169 10-26 (99)
224 3bbp_D GRIP and coiled-coil do 21.6 1.3E+02 0.0044 22.5 4.5 31 119-149 13-43 (71)
225 4egw_A Magnesium transport pro 21.6 1.2E+02 0.0042 26.3 5.2 63 137-201 162-224 (280)
226 3c98_B Syntaxin-1A; protein co 21.5 3.5E+02 0.012 22.4 8.6 22 128-149 47-68 (279)
227 3ku3_B Hemagglutinin HA2 chain 21.4 68 0.0023 27.6 3.3 57 119-175 34-97 (174)
228 3lof_A Heat shock 70 kDa prote 21.3 2.6E+02 0.0091 21.0 7.4 23 183-205 61-83 (113)
229 2pjw_V Vacuolar protein sortin 21.3 2.8E+02 0.0096 21.2 7.2 33 135-167 33-65 (91)
230 4gip_D Fusion glycoprotein F1; 21.2 71 0.0024 30.9 3.7 45 132-176 346-393 (409)
231 1wyy_A E2 glycoprotein; membra 21.1 3.7E+02 0.013 22.6 9.1 29 184-212 64-92 (149)
232 2j69_A Bacterial dynamin-like 21.1 3.4E+02 0.012 27.1 8.9 18 66-83 220-238 (695)
233 3m5g_B Hemagglutinin; influenz 21.0 39 0.0013 29.3 1.7 61 119-179 34-101 (182)
234 4gde_A UDP-galactopyranose mut 20.9 26 0.0009 32.0 0.7 14 9-22 13-26 (513)
235 2fyz_B Fusion protein, fusion 20.9 89 0.0031 21.6 3.3 23 132-154 11-33 (48)
236 3okq_A BUD site selection prot 20.8 3.7E+02 0.013 22.4 8.1 40 119-158 12-51 (141)
237 3g4d_A (+)-delta-cadinene synt 20.6 2.4E+02 0.0082 28.0 7.6 98 106-205 253-360 (554)
238 2qyw_A Vesicle transport throu 20.5 2.9E+02 0.0099 21.1 7.1 60 135-194 15-76 (102)
239 3i00_A HIP-I, huntingtin-inter 20.5 1.6E+02 0.0056 23.6 5.3 44 163-209 11-54 (120)
240 3u06_A Protein claret segregat 20.5 1.4E+02 0.0048 28.3 5.7 18 148-165 12-29 (412)
241 3u5c_K 40S ribosomal protein S 20.3 35 0.0012 27.3 1.2 13 214-226 69-81 (105)
242 3gpv_A Transcriptional regulat 20.2 2.4E+02 0.0082 22.5 6.4 14 192-205 113-126 (148)
243 1dip_A Delta-sleep-inducing pe 20.2 54 0.0018 24.9 2.2 24 186-209 13-36 (78)
244 3f6n_A Virion-associated prote 20.1 3.6E+02 0.012 22.1 7.3 43 163-205 5-50 (129)
245 1nog_A Conserved hypothetical 20.1 2.8E+02 0.0096 23.5 7.0 48 164-211 50-97 (177)
246 1woz_A 177AA long conserved hy 20.1 2.8E+02 0.0096 23.4 7.0 47 164-210 49-95 (177)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=93.67 E-value=0.13 Score=39.98 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=47.0
Q ss_pred HHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768 120 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (277)
Q Consensus 120 ~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~ 199 (277)
|||+|.+..-.... .++..|.+|...+..++.-|-|-+..=-+++.+++.....-|.-++.|-..+..
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88998887642221 245555556555555555554445444445555555555556666777777777
Q ss_pred HHHHHHHHh
Q 023768 200 LESKLIEIE 208 (277)
Q Consensus 200 Le~Ki~~ie 208 (277)
+..+++.+|
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 778888775
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.33 E-value=2.2 Score=42.81 Aligned_cols=104 Identities=9% Similarity=0.111 Sum_probs=68.4
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH-------HHHHHHHHHHHHHhhhchhhhh
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-------VEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~-------~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
+-++|-=+-|.+.+-++.|..+|++++..=..+-....+..+.+..++.+. .|++.++++.+..|++.|..--
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788999999999999999997776666666666666555554443 3444455555555555555544
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh---hhHHHhHHH
Q 023768 188 DEFQSVRDIVQTLESKLIEIEG---KQDITTLGV 218 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~---kQd~tn~GV 218 (277)
.-|+.|+..|+.+-.||.++|- -|-++|.|=
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5556666666666677776665 455566553
No 3
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=90.70 E-value=3.4 Score=32.87 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=58.6
Q ss_pred HHHHHhh---hhHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 131 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 131 ~sv~kqL---eqVs~sL~~tKkhLsqRId~vD----~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
+.++||| .+..+.+..+|+.|..+++.+. .|++++.+....++.++..=..++..++.+++.....=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555 4667788899999999998865 56777777888888888887777777777777777766666677
Q ss_pred HHHHhh
Q 023768 204 LIEIEG 209 (277)
Q Consensus 204 i~~ie~ 209 (277)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 4
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=90.17 E-value=2.9 Score=41.10 Aligned_cols=96 Identities=10% Similarity=0.212 Sum_probs=55.7
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-----hh
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 186 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKk---hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~-----~i 186 (277)
+.|.|--..++....+..|...|++++..-..++. +|...+...+.++.+..+.++.-.+++.+.+.-++ .+
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 48888888999999999999999999876666553 34444444444444444433333333333332222 12
Q ss_pred hhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 187 GDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 187 ~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
...|..|+..+..|..||..++.+
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~ 190 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENA 190 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555443
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.19 E-value=2.6 Score=39.79 Aligned_cols=66 Identities=9% Similarity=-0.056 Sum_probs=49.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 158 vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
+....+++.++.++.+.+-..+..|.+.++.+++.+++.-..++..+..+...-.-+++-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 334555666678888888888888888888888888888888887777777776677776666665
No 6
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=88.73 E-value=7.4 Score=34.13 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
++.++..+...+..+...+...-.++...++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444444444444444443333
No 7
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=88.28 E-value=4.9 Score=35.30 Aligned_cols=69 Identities=10% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 132 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
.+...+++++..+...-.++....+.+....++..+....+.+.+.+....+..+...+..+-..+..+
T Consensus 4 qva~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (213)
T 3g67_A 4 EVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGET 72 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555544444444444444444444433333333
No 8
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=87.50 E-value=8.6 Score=36.02 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
-|.+++..+-..-..+-++|..+.+.+.+-|+..-.. .|+......+|+++++++..+.+++-.-.+-++.|-.|-
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 4555555554444466778888888888888776443 477788899999999999999988887777766666654
No 9
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=87.19 E-value=9.4 Score=32.10 Aligned_cols=80 Identities=13% Similarity=0.211 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhhchhhhhhHHHHHHHHHH--------hHHH
Q 023768 143 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 202 (277)
Q Consensus 143 sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~------------~i~~dv~~i~~dv~~v~~~V~--------~Le~ 202 (277)
-+..-|++|+.+.++|=.+.|+.+.+++.+++||. .+..|+.....+++.+..-|. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 35667788888888888888888888888877753 455566666666666666554 3567
Q ss_pred HHHHHhhhhHHHhHHHHHHH
Q 023768 203 KLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 203 Ki~~ie~kQd~tn~GV~~Lc 222 (277)
-+..|-+-|+|.+.==.++-
T Consensus 91 EL~~VceEQqfl~~QedL~~ 110 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEELIL 110 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888776544433
No 10
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=86.83 E-value=5.8 Score=38.26 Aligned_cols=95 Identities=9% Similarity=0.136 Sum_probs=48.3
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs-------~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
|=++|-=+-|++.+.++.+...|+.++ .-+..++.-|.+|.....+.-+-..|.+..+++....|++.|..--
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566777777777777776653 3344444445555544444444455555555555555555544322
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh
Q 023768 188 DEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
-.|+.|+..|+.+-.||.+||-
T Consensus 134 ~~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 134 QRINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2444444444444444444333
No 11
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=85.42 E-value=1.3 Score=35.34 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=39.8
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++.-+|.|||=.+ ++..|++.|..|++.++..+++..+....+++.++.
T Consensus 72 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 72 VIMSVGAGVAIKK-------------------------------NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEe-------------------------------eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999887 347788888888888888888876666666666655
Q ss_pred hhhch
Q 023768 179 LRGRS 183 (277)
Q Consensus 179 i~~dv 183 (277)
+...+
T Consensus 121 ~~~~l 125 (133)
T 1fxk_C 121 LSPQA 125 (133)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.87 E-value=8.2 Score=36.97 Aligned_cols=96 Identities=9% Similarity=0.093 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhhchhhhhhH-------
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKLIGDE------- 189 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD-------~klde~~ei~~~iq~eV~~i~~dv~~i~~d------- 189 (277)
..+.+.+..+...+++....+...++++..+.+... .+.++..+..+.++++......+...+..+
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKE 538 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcc
Confidence 345566666666677777777777777777766655 111222233334444444443444444433
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 190 FQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
.+.++..+..||.+++.....+....+-..
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 344445555555555555555544444443
No 13
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=84.27 E-value=9.3 Score=29.96 Aligned_cols=44 Identities=27% Similarity=0.464 Sum_probs=39.2
Q ss_pred hhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 180 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 180 ~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
+.-++.|++++-.|+.....+|--+. .|.-++.-..-||++.++
T Consensus 36 k~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 36 KTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999888 899999999999999874
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.16 E-value=19 Score=31.00 Aligned_cols=83 Identities=16% Similarity=0.202 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
.-+.+.++...+.+.+-++.+.|..-|+.-+++-+...+-... ....+.|+..++...+..-.|...+++.|..||
T Consensus 56 ~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~r----i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 56 RNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQAR----ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666667777776666664444443322222111 344556666667777777778888888888888
Q ss_pred HHHHHHh
Q 023768 202 SKLIEIE 208 (277)
Q Consensus 202 ~Ki~~ie 208 (277)
..-..++
T Consensus 132 Ke~a~~e 138 (168)
T 3o0z_A 132 KEKNNLE 138 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 7766554
No 15
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=83.14 E-value=3.1 Score=34.09 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkh 150 (277)
+++-|.++|.++..+|+.+.++|..+.++
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66777777777777777777777777655
No 16
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=82.91 E-value=1.7 Score=27.70 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
+++..|+..++.+|..|..+++++|+...
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678899999999999999999988654
No 17
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.91 E-value=4.8 Score=38.85 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEEeCCCCCCCCcchhhhHHhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhH
Q 023768 61 LLAEVSSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDV 140 (277)
Q Consensus 61 l~aQV~~L~~El~~Lsr~iTvvn~~~sg~g~~~~~~iv~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqV 140 (277)
+...|+.|+++|..++|. + . ..+.++ ++|.+.....-+|..+-
T Consensus 65 ~~~rIe~L~~~L~~~s~s----~-----~--~~~~y~--------------------------~~~~~~lk~~~~q~~dn 107 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKN----S-----K--DSNTLT--------------------------KNIVELMRGDFAKANNN 107 (390)
T ss_pred HHHHHHHHHHHHHHHHHh----h-----h--HHHHHH--------------------------HHHHHHHHHHHHhhccc
Confidence 778899999999888551 0 0 112221 33444444444555555
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHH
Q 023768 141 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 191 (277)
Q Consensus 141 s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~ 191 (277)
-..+...-.+|.+||.-+..++++|..-.+.+|..|..++.++.++..||+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667788899999999988877666677666666666666666663
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=82.47 E-value=6.2 Score=34.87 Aligned_cols=23 Identities=4% Similarity=0.107 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHh
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
+..+++.....+..+|.++-++.
T Consensus 95 L~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 19
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=82.28 E-value=9.6 Score=27.69 Aligned_cols=66 Identities=20% Similarity=0.233 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768 125 SLSDACNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~s-L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
.|+.+.+.|-.|-|.+-.. -..+..-...+++.+-.......+-....+.++++++..+..+..++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el 72 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEV 72 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666554432 23344445555554444444443334444444444444433333333
No 20
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.81 E-value=6.3 Score=30.09 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=25.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
.+|++.+...++......-.++.++..++.++..+++.++....-+..|..+
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555544433333344455555555555555555555555444444433
No 21
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=81.55 E-value=6.6 Score=30.28 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
+.+...++++...++++...=...|+ +-|..++..+||..++..++.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk---~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRN---TTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888888888733223333 447778889999999999999999888
No 22
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=81.40 E-value=3.9 Score=33.44 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=39.0
Q ss_pred HhhhhheeeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 99 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 99 ~iGavGYgYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
|+.-+|.||+=.+ .+..|++.|..|++.++..+++..+....+++..+.
T Consensus 82 V~v~lG~g~~vE~-------------------------------~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~ 130 (151)
T 2zdi_C 82 AIVSVGSGYAVER-------------------------------SIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGE 130 (151)
T ss_dssp EEEEEETTEEEEE-------------------------------EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeCCCeEEEe-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999887 347788888888888888887776666666666555
Q ss_pred hhhc
Q 023768 179 LRGR 182 (277)
Q Consensus 179 i~~d 182 (277)
+...
T Consensus 131 ~~~~ 134 (151)
T 2zdi_C 131 VARK 134 (151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 23
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=81.08 E-value=4.8 Score=31.40 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=40.5
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~-~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~ 180 (277)
+++-.--+.+...++++++.+.++..... ..|+ +.|..++..+||..|+..++.-|+..+-
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk---~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKK---KLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444455666777777777777643322 3333 3467788888999999998888887764
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.03 E-value=19 Score=29.59 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+.++++.+...+++...=....+.++...+...+....++..++..+..|+.++..+|...+.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666667777777777777777777888888888888888877766553
No 25
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=80.68 E-value=17 Score=35.71 Aligned_cols=11 Identities=9% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 023768 65 VSSVQQELSHV 75 (277)
Q Consensus 65 V~~L~~El~~L 75 (277)
|.+=++|--.|
T Consensus 23 ~~~~~~~~~~~ 33 (464)
T 1m1j_B 23 LDKRQEAAPTL 33 (464)
T ss_dssp -----------
T ss_pred cccccccCCCC
Confidence 44444444444
No 26
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=80.07 E-value=2.2 Score=33.26 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=43.7
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 180 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~ 180 (277)
+++----+.+...++++...+.++...=...|+ +-|..++..+||..++..++.-||..+-
T Consensus 5 elFe~YE~df~~l~~~i~~kl~~i~~~~geerk---~~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 5 SSGEGYEQDFAVLTAEITSKIARVPRLPPDEKK---QMVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHH---HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333334466778888899888887643223333 3377888999999999999999988774
No 27
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=79.81 E-value=36 Score=32.91 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=15.1
Q ss_pred CchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHH
Q 023768 116 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (277)
Q Consensus 116 SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tK 148 (277)
.|+|.==.++..+-+..+...|++|+.+=+.|+
T Consensus 26 ~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~ 58 (411)
T 3ghg_C 26 ADFLSTYQTKVDKDLQSLEDILHQVENKTSEVK 58 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHhhhhHHH
Confidence 344444444444444444444544444444443
No 28
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=79.79 E-value=21 Score=31.31 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred hhHHHHHHHHH--HhhhhHHHHHHHHHHHHHHhHhhhhhh-------HHHHHHHHHHHHHHHHHhhh----------chh
Q 023768 124 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITSVDRD-------VNKIVEISQATQEEVTILRG----------RSK 184 (277)
Q Consensus 124 r~m~~Av~sv~--kqLeqVs~sL~~tKkhLsqRId~vD~k-------lde~~ei~~~iq~eV~~i~~----------dv~ 184 (277)
|.|.++...++ +.+.+..+.|-.|+.+|.--++..... .|.+..+...+.+.+..++. +..
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Confidence 66667766664 445556677888888887776665544 33334444444444444431 111
Q ss_pred hhh-------hHHHHHHHHHHhHHHHHHH---HhhhhHHHhHHHHHHHHHHHhhcCCC
Q 023768 185 LIG-------DEFQSVRDIVQTLESKLIE---IEGKQDITTLGVKKLCDRARELENGR 232 (277)
Q Consensus 185 ~i~-------~dv~~v~~~V~~Le~Ki~~---ie~kQd~tn~GV~~Lc~~~~~~~~~~ 232 (277)
.|+ .=+..+......+...+.+ -..-||.|-+-|......++.++..-
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L 163 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQL 163 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 111 1122222333444444443 34589999999988888777776543
No 29
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=79.74 E-value=23 Score=28.78 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=9.7
Q ss_pred hhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 179 LRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 179 i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
+...+..+..++..+...+..++..+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (284)
T 1c1g_A 74 AEKKATDAEADVASLNRRIQLFEEEL 99 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 30
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=79.10 E-value=7.9 Score=32.33 Aligned_cols=92 Identities=13% Similarity=0.176 Sum_probs=45.0
Q ss_pred CCCchHHHhhhhHHHH------HHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhh
Q 023768 114 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 187 (277)
Q Consensus 114 s~SDlM~VTkr~m~~A------v~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~ 187 (277)
+..|.+....+.|..+ ++.+...|+.++..|..+-..|..-.+.++--=+. -..|.+....++.=-.+.|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~r----L~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEA----LDRVEARLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHHHHHHHHcC
Confidence 3445555555655532 34455555555555555555555555555422111 2223334444444444455
Q ss_pred hHHHHHHHHHHhHHHHHHHHhh
Q 023768 188 DEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 5555555555555555555443
No 31
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.80 E-value=10 Score=28.87 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHH---hhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 124 RSLSDACNSVAR---QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 124 r~m~~Av~sv~k---qLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
++|.+-++.+=+ +|-..-.+|.-+|+.|..|+|.+.+.. +.++.++.++++....+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~---------------------e~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEK---------------------DVLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHHHHHHHHHHHHHH
Confidence 455666665543 444455678888888888877776654 33566778888888888
Q ss_pred HHHHHHHhh
Q 023768 201 ESKLIEIEG 209 (277)
Q Consensus 201 e~Ki~~ie~ 209 (277)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888887765
No 32
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=78.77 E-value=21 Score=35.33 Aligned_cols=107 Identities=13% Similarity=0.182 Sum_probs=77.9
Q ss_pred cccCCCchHHHhhhhHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768 111 KGWKLPDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (277)
Q Consensus 111 KG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs-------~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv 183 (277)
-|--+-++|-=+.|+..+.++.+...|+.++ .-+..++.-|.+|.....+.-+-..|.+..+++....|++.|
T Consensus 48 SGCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 48 SGCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3555667788888988888888888888774 456667777777777777777777778888888888888877
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhh---hhHHHhHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEG---KQDITTLG 217 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~---kQd~tn~G 217 (277)
..--.-|..|+..|+.+-.||.++|. -|-..|.|
T Consensus 128 d~qi~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~ 164 (491)
T 1m1j_A 128 ATQVNRIKALQNSIQEQVVEMKRLEVDIDIKIRACKG 164 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 65336777777777777777777765 44455554
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.65 E-value=5.7 Score=31.92 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=24.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
..|+.+...++.+...-......+.++.. +...++..++.++..||.-+..
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQK 93 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHH
Confidence 34555555555544444444444443332 2333455555555555554443
No 34
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=78.09 E-value=4.1 Score=37.50 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
..|+++++..++....+|+..++.++++ +..+++++.++++.+-+++.-||..+.+|
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~--------------V~n~~~q~~~~~~~~~~~~~~~~~~~~~~ 256 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKG--------------VENKMKQIEDKIEEILSKIYHIENEIARI 256 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888888777776665555443 44444555555555555555555555443
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=77.99 E-value=16 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=20.7
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
...++.+..........+|.+++.++..||.-++..+..
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444555556666666666666666555444
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=77.96 E-value=21 Score=33.29 Aligned_cols=40 Identities=8% Similarity=0.214 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhhhhHHHH------HHHHHHHHHHhHhhhhhhHHH
Q 023768 125 SLSDACNSVARQLEDVYSS------ISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~s------L~~tKkhLsqRId~vD~klde 164 (277)
....|++.+.++++++-+. ...+.++|.+.|+++.+++-+
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 415 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQD 415 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHH
Confidence 4455555555555544333 334556688888887777644
No 37
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=75.40 E-value=9.4 Score=34.27 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=59.5
Q ss_pred cCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH------HH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768 113 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR------QL---SSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (277)
Q Consensus 113 ~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKk------hL---sqRId~vD~klde~~ei~~~iq~eV~~i~~dv 183 (277)
+|.|=+|||.... .|.-+-.+|.=|-=.++..+.-| .| ++||..+..++|+..+=+-.....+..+.--+
T Consensus 36 FS~sYllyVi~qg-tDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Ri 114 (242)
T 3c9i_A 36 FSKSYLLYVIAQG-TDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRV 114 (242)
T ss_dssp SCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccc-chHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhhee
Confidence 3445567776543 23333334433333333333322 23 57888888888888776666666666666667
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.....||..++..|..|++++...|.+
T Consensus 115 t~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 115 TTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhhhhcccccccccc
Confidence 777777777777777777777655543
No 38
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=75.29 E-value=6.3 Score=31.80 Aligned_cols=71 Identities=7% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHhhhhHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 133 VARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 133 v~kqLeqVs~sL~~tKkh---LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
+..+..+-++.+..+|.+ +..+|+.+...++.+...-......+.++.. +...++..++.++..||.-+..
T Consensus 22 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 22 LNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555543 3445666666666655544455554444433 2344555666666666655543
No 39
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=74.61 E-value=50 Score=29.99 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=4.8
Q ss_pred HHHHHHHHHHhh
Q 023768 217 GVKKLCDRAREL 228 (277)
Q Consensus 217 GV~~Lc~~~~~~ 228 (277)
....|-+.+..+
T Consensus 284 ~~~~l~~~a~~L 295 (341)
T 3zx6_A 284 AAAALEEQASRL 295 (341)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 40
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.49 E-value=27 Score=33.62 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=14.4
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tK 148 (277)
|++===.+++-.-+..|.+.|++|+..-+.++
T Consensus 27 d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~ 58 (409)
T 1m1j_C 27 DFFNKYRLTTDGELLEIEGLLQQATNSTGSIE 58 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444445444444444444444
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.07 E-value=26 Score=26.82 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=35.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 155 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 155 Id~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
++.++.|+++..+.+...|.++.+++..-.....+.+.++.-...|+.....+..-|..-...+.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555666666666666666665555555555555555555555444444444443
No 42
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=74.04 E-value=27 Score=26.62 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhHHHHHHHH---HHHHHHhHhhhhhhH
Q 023768 129 ACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDV 162 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~t---KkhLsqRId~vD~kl 162 (277)
....+.+.++++...|... +..+.++|+.+...+
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l 40 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555554444432 333444444444443
No 43
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=72.16 E-value=14 Score=25.55 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=10.7
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
++.+..+.+..+.+...++..++.-|..+
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.71 E-value=27 Score=35.09 Aligned_cols=48 Identities=13% Similarity=0.234 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH----HHHHHHhhhchhhhh
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQAT----QEEVTILRGRSKLIG 187 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~i----q~eV~~i~~dv~~i~ 187 (277)
+...|..+.+.|..||+.|-.++|+.....+.+ +...+.++.++.+.+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh
Confidence 556788888888999988888888875544443 334555566655555
No 45
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=71.67 E-value=23 Score=25.02 Aligned_cols=55 Identities=7% Similarity=0.136 Sum_probs=26.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+..+.++.+..++..++.++..|-+|+ +.=..++..|+.++++...+-..++.-+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El--------------~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl 61 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEI--------------DTQNRQIDRIMEKADSNKTRIDEANQRA 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444 4444455555555555555555554443
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=70.97 E-value=47 Score=28.12 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh-hhHHHhHH
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG-KQDITTLG 217 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~-kQd~tn~G 217 (277)
+.-..|..-..+|..||..++..+.+-.. .+..+.+++.+++.-...+|.|+..++. +++..-+=
T Consensus 68 ~~I~~L~~El~~l~~ki~dLeeel~eK~K--------------~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRRLKEVIALKNK--------------NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555444322 2344556667777777888888887766 55544443
Q ss_pred HHH
Q 023768 218 VKK 220 (277)
Q Consensus 218 V~~ 220 (277)
+.+
T Consensus 134 M~r 136 (152)
T 3a7p_A 134 LKK 136 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 47
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=70.59 E-value=16 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=11.2
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIV 197 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V 197 (277)
+..+..+..+++.++++|..++..+
T Consensus 32 k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 32 KEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444454444433
No 48
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=70.40 E-value=61 Score=29.16 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH------HHHHhH
Q 023768 127 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR------DIVQTL 200 (277)
Q Consensus 127 ~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~------~~V~~L 200 (277)
.+++.+|+..|..+...+..+..++.++++..-..|.. +..+.+.|...+..=..+.++|..++ .++..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~----IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKS----IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 46788888888888888888888888888877777655 44455566666666666777777666 466777
Q ss_pred HHHHHHHhhhhHH
Q 023768 201 ESKLIEIEGKQDI 213 (277)
Q Consensus 201 e~Ki~~ie~kQd~ 213 (277)
|..+.+.|.....
T Consensus 137 eqELvraEae~lv 149 (234)
T 3plt_A 137 EQELVRAEAESLV 149 (234)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhH
Confidence 7777665554433
No 49
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=69.77 E-value=11 Score=26.56 Aligned_cols=51 Identities=10% Similarity=0.198 Sum_probs=23.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHH
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (277)
+.++.+..++..++.++..|.+|+ +.=..++..|+.+++....+-..++.-
T Consensus 9 ~~Ld~L~~~v~~lk~~a~~Ig~El--------------~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 9 AGLDALSSIISRQKQMGQEIGNEL--------------DEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444554444444 334444444555555544444444443
No 50
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=69.65 E-value=44 Score=27.16 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=56.7
Q ss_pred EEecccCCCchHHHhhhhHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 108 VWWKGWKLPDMMFATRRSLSDACNSVARQLEDV-----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 108 mwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqV-----------s~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
.+.-+-+.-|=+|+-|.-..+++..+..-..+- +..+..++++|..-++.+.+.|++..+.+..+..+=
T Consensus 18 ~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np 97 (130)
T 4dnd_A 18 LYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANP 97 (130)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred eeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 344566678999999988888887776666552 125678888888888888888888766666554432
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
..-+-+ ..++..=+.-|..++.+|..|+.
T Consensus 98 ~kF~l~----~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 98 GKFKLP----AGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp HHHCCC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 12244444555666666665543
No 51
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=68.89 E-value=26 Score=26.32 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
|+.+++.=..++..|+.++++...+-..+|.-+.
T Consensus 48 ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 48 MGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555555544443
No 52
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=68.84 E-value=37 Score=26.05 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=47.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
....|.+.+..++.+..+-.....++|..++..+..+..|++.....+...-.++..-+..-.-+-..|..|..-++-+
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555566666677777777777777777666666666666655555555555565555555443
No 53
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.59 E-value=29 Score=34.34 Aligned_cols=66 Identities=11% Similarity=0.077 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
+|.|.....-+|..+--..+...-.+|..||.-+..+++++..-+..+|..|..++.++.++..||
T Consensus 90 ~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 90 ETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555556666677888999999988886666666665555444444444443
No 54
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=67.92 E-value=71 Score=28.97 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 023768 61 LLAEVSSVQ 69 (277)
Q Consensus 61 l~aQV~~L~ 69 (277)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 55
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=67.76 E-value=52 Score=31.84 Aligned_cols=91 Identities=11% Similarity=0.179 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc------------------hhhhhhHHHHHHHHHHhHH
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------------------SKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d------------------v~~i~~dv~~v~~~V~~Le 201 (277)
|.+.|..-++.....|+.|+..|++....+..+.+-|..|+.- .+++-+++..++..+...+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~ 104 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHD 104 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555666666666666666666666665555555555555442 2335566666666666667
Q ss_pred HHHHHHhhhhHHHhHHHHHHHHHHHhhcC
Q 023768 202 SKLIEIEGKQDITTLGVKKLCDRARELEN 230 (277)
Q Consensus 202 ~Ki~~ie~kQd~tn~GV~~Lc~~~~~~~~ 230 (277)
..|..++..-+....-|..|-+-+..++.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 105 SSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655555666666665555533
No 56
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=66.79 E-value=42 Score=25.92 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=35.0
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
.|.+.+..++.+...-......+|..++..+..+..|++..+..+...-.++..-+..-.-+-..|..|
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555566666666666666666665555555455544433333333333333
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=66.54 E-value=28 Score=26.07 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=8.0
Q ss_pred HHHHhHHHHHHHHhh
Q 023768 195 DIVQTLESKLIEIEG 209 (277)
Q Consensus 195 ~~V~~Le~Ki~~ie~ 209 (277)
...+.|++||..+.+
T Consensus 46 ~~~e~Ld~KI~eL~e 60 (72)
T 3cve_A 46 TLLEILDGKIFELTE 60 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 344556666665543
No 58
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.45 E-value=82 Score=30.26 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 185 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 185 ~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
.+.+++..++..|..-|..|..++..-+-...-|..|-+-+..+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333334444444433333
No 59
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.25 E-value=4.5 Score=27.61 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=15.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHH
Q 023768 147 AQRQLSSKITSVDRDVNKIVE 167 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~e 167 (277)
+|.+|-|.|++||..+++..+
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~ 23 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQ 23 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 467788889988888776533
No 60
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=65.40 E-value=35 Score=24.45 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=16.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD 159 (277)
+..+++++.+..+.|...-..|.+.++.|.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 14 LERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555553
No 61
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=65.31 E-value=25 Score=33.55 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+...+|.+..+++.+..+ .++++++|.. .-++|.+.+...+..+...+..||.++..+++
T Consensus 33 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (421)
T 1ses_A 33 LDREVQELKKRLQEVQTE---RNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEALREKEA 92 (421)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 4446666653 11123333444444444444444454444443
No 62
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=65.24 E-value=10 Score=28.48 Aligned_cols=54 Identities=9% Similarity=0.132 Sum_probs=28.9
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
...|.+||+.+..|+--|...+....+.|.+-+.. |+.++..+..|-.|+..++
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~-------Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Confidence 34566777777777766655555555555554444 4444444444445555443
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.22 E-value=37 Score=25.93 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=19.8
Q ss_pred HHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 175 EVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 175 eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
....+.....+...+....+..+++|=||++
T Consensus 49 ~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 49 QREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333555666677777777777777766664
No 64
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=64.81 E-value=32 Score=25.79 Aligned_cols=59 Identities=7% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
++..+.++.|...+..++.++..|-+|+..=-.=+..|..+++.....+..--.|+..+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556666666666665555555556666666665555555555443
No 65
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=64.13 E-value=39 Score=24.56 Aligned_cols=29 Identities=10% Similarity=0.201 Sum_probs=13.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+|+++...+..+...|.+.+..|...++.
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~ 40 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAV 40 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 66
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=63.97 E-value=25 Score=33.92 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
+...+|.+..+++.+..+ .++++++|..- ..-++|.+.+...+..+...+..||.++..++..-+
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKKID 100 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655555 45567777642 122355566666667777777777777666665443
No 67
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=63.64 E-value=21 Score=28.10 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=7.5
Q ss_pred HHHHHHHHhHhhhhhhH
Q 023768 146 AAQRQLSSKITSVDRDV 162 (277)
Q Consensus 146 ~tKkhLsqRId~vD~kl 162 (277)
.++++|...|+.++.++
T Consensus 47 ~t~~eL~~EI~~L~~eI 63 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEI 63 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=63.49 E-value=58 Score=34.86 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHH
Q 023768 124 RSLSDACNSVAR 135 (277)
Q Consensus 124 r~m~~Av~sv~k 135 (277)
..|++-+..+..
T Consensus 924 ~~LE~kl~eLq~ 935 (1080)
T 2dfs_A 924 IGLENKIMQLQR 935 (1080)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 69
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.67 E-value=81 Score=27.42 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=57.5
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH----HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~e----V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.-|+.==+....--++|..++.++...+++.+.=-+..+.+ ++.++.++...+...+.++..+..||-+-+.+|-+
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333344455555667777777777776665555555555 78888888888888888888888888887777776
Q ss_pred hHHHhHHH
Q 023768 211 QDITTLGV 218 (277)
Q Consensus 211 Qd~tn~GV 218 (277)
-..++.-+
T Consensus 125 ~R~~~~Sl 132 (189)
T 2v71_A 125 KRATIMSL 132 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhH
Confidence 66665554
No 70
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=61.64 E-value=48 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=20.9
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ 166 (277)
.+|++....|....++|.+.++.++..++...
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666667777777777777776666643
No 71
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=61.39 E-value=25 Score=26.01 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 223 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~ 223 (277)
..|+.+|+.=..++..|+.+++....+-..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777777777777777777776666543
No 72
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=61.16 E-value=20 Score=26.54 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.+.++.+..++..++.++..|.+|+.+=-.=+..+..+++.....+..--.|+..+-.
T Consensus 18 D~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 18 DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777777666666666777777777666666666665443
No 73
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.09 E-value=28 Score=26.47 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=26.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
.|..||..+...+++...-....+.++..+.+-+.-=-+|+..|++-
T Consensus 24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqg 70 (79)
T 3cvf_A 24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREG 70 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 36667777777777766666666666655554444334444444433
No 74
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=60.72 E-value=22 Score=25.09 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=30.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 184 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~ 184 (277)
-.+|+.++..+...| ++ -......+++|.++...+.+++......+.
T Consensus 8 D~~Ld~L~~~v~~lk-~~---a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~ 54 (65)
T 1gl2_D 8 DAGLDALSSIISRQK-QM---GQEIGNELDEQNEIIDDLANLVENTDEKLR 54 (65)
T ss_dssp CHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677766665443 33 344567788888888888777766655543
No 75
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=60.71 E-value=34 Score=25.95 Aligned_cols=61 Identities=15% Similarity=0.206 Sum_probs=33.6
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 146 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 146 ~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+.+..+++|++.+..+=.+..+-....++++.+-+..-++.+.++ ....+.|++||..+.+
T Consensus 6 ~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~El---k~l~e~Ld~KI~eL~e 66 (79)
T 3cvf_A 6 AEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEV---GRAAQLLDVSLFELSE 66 (79)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHH
Confidence 345556666666666655555555555555555555555555444 3445667788877655
No 76
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=59.74 E-value=18 Score=25.10 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
+..+-.+.|-.-|+|+.+.....-..+..|||.+..++|+.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44555566666777888888888888888888888887764
No 77
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=59.46 E-value=36 Score=33.47 Aligned_cols=85 Identities=16% Similarity=0.144 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHH-hhh---hHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-------hchhhhhh
Q 023768 123 RRSLSDACNSVAR-QLE---DVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-------GRSKLIGD 188 (277)
Q Consensus 123 kr~m~~Av~sv~k-qLe---qVs~s---L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~-------~dv~~i~~ 188 (277)
|.|.....+++.+ ..+ ..-+. +...+|.+..+++.+..+ .++++++|..-...-. .+.+.+..
T Consensus 47 r~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~ 123 (501)
T 1wle_A 47 CAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEE---KEAVTEAVRALVVNQDNSQVQQDPQYQSLRA 123 (501)
T ss_dssp HHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCTTGGGCHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhcCccccccccccHHHHHH
Confidence 4566665555543 222 11233 344556666666655555 4556777664221110 23444555
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 023768 189 EFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
.+..+...+..||.++..+++.
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 78
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=57.88 E-value=22 Score=24.49 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 161 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k 161 (277)
|.+.++.+...+-.+=....++...|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444445555567899999999988765
No 79
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=57.50 E-value=50 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=13.8
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+|+++...+..+..+|.+.++.|+..++.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 80
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=57.48 E-value=50 Score=23.66 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhh
Q 023768 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDR 160 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~ 160 (277)
.+..+++++.+..+.|...-..|.+.++.|..
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~ 44 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666777777777643
No 81
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=56.94 E-value=23 Score=33.81 Aligned_cols=65 Identities=11% Similarity=0.240 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
+...+|.+..+++.+..+ .++++++|..- ..-++|.+.+...+..+...+..||.++..++.+-+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELK 99 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655555 44567776541 112345666677777777777777777777766543
No 82
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.48 E-value=65 Score=24.66 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhHHHH
Q 023768 189 EFQSVRDIVQTLESK 203 (277)
Q Consensus 189 dv~~v~~~V~~Le~K 203 (277)
+|.+++.++..||.-
T Consensus 45 ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 45 EQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 83
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=56.46 E-value=74 Score=25.34 Aligned_cols=62 Identities=3% Similarity=0.004 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
|..=|..|.=.||.+-++++++.|.-.+++++..+-..+++........++..+..|.+.|.
T Consensus 21 LDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 21 LDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44457778888999999999999999999999988888887777777777777666666554
No 84
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=55.97 E-value=46 Score=24.97 Aligned_cols=57 Identities=16% Similarity=0.271 Sum_probs=33.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
-|+|...++.-++.+|..+-++++.+-++..--+=-....++....+..+..||.+.
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~ 61 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKL 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhc
Confidence 456666666666666666666666666655444444445555566666666655544
No 85
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=55.75 E-value=50 Score=23.18 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=30.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
|.+++..+..++....-+...-.++|.....-++.+...-..-+.++..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 4445555555555544444444445555555555444444444667777777766544
No 86
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=55.63 E-value=35 Score=25.72 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
|.+.+..+...+-.+-....++..+|.|||..+..++..
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444444455567999999999999988754
No 87
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=54.93 E-value=2.5 Score=32.69 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=11.2
Q ss_pred eeeEccCccceeec
Q 023768 9 TFLVGAGILTSVLA 22 (277)
Q Consensus 9 ~iLvGAG~~GSvl~ 22 (277)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68899999987544
No 88
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.74 E-value=64 Score=24.06 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
|..=|.++-.+|++-...=...|.+|.+=++.+|-|+++
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~e 57 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFE 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333444444444444444444444444444444444444
No 89
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=54.63 E-value=30 Score=24.85 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 174 ~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+++..|..++..++.-+..+..+|..=+.-|++||.+.+.+..-|
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 50 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHV 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 356666666777777788888888888888888888876666555
No 90
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=54.36 E-value=56 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=21.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
.+|+++...+..+..+|.+.+..|...++..
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777666654
No 91
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=53.94 E-value=45 Score=25.71 Aligned_cols=73 Identities=8% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhHHHHHH--------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHh
Q 023768 128 DACNSVARQLEDVYSSIS--------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 199 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~--------~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~ 199 (277)
.+++.+..||.++..-+. .+++.|..-++.+.+.+++..+.+.-++.+ -..||..=+..|..
T Consensus 10 ~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~ 79 (95)
T 2c5k_T 10 QVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKN 79 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHH
Confidence 355556666666655553 334555555555555554444333333322 34455566666667
Q ss_pred HHHHHHHHhhh
Q 023768 200 LESKLIEIEGK 210 (277)
Q Consensus 200 Le~Ki~~ie~k 210 (277)
++.++..|..+
T Consensus 80 l~~~i~~lk~~ 90 (95)
T 2c5k_T 80 IKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77776665543
No 92
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=53.83 E-value=24 Score=27.24 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkh 150 (277)
++.-+.+.|.++...|+.+.++|..+++.
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~ 65 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRD 65 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 68889999999999999999999997776
No 93
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.68 E-value=78 Score=25.90 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=30.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 158 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 158 vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
++..+.+.+.=....+.+..++...++....+++.++..+..||.++..
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344445556666666677777788888888888877753
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.32 E-value=73 Score=38.28 Aligned_cols=21 Identities=0% Similarity=0.036 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQ 148 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tK 148 (277)
++++...+.|+...+.|+.++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~ 2034 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIV 2034 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 95
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=53.05 E-value=66 Score=31.59 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
|...+|.+..+++.+..+. ++++++|..- ..-.+|.+.+..++..|...+..||.++..++..-+
T Consensus 38 ld~~~r~~~~~~~~l~~~r---n~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKL---NSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666554 4456666542 223455666666777777777777777776666543
No 96
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=53.02 E-value=53 Score=23.83 Aligned_cols=53 Identities=15% Similarity=0.114 Sum_probs=38.0
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH----HHHHHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV----KKLCDRA 225 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV----~~Lc~~~ 225 (277)
.+++..+..++..++.-+..+..+|..=+.-+++||.+.+.+..-| ..|-.+.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777788888888888888888888877666555 4554444
No 97
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=52.37 E-value=71 Score=28.76 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHH
Q 023768 167 EISQATQEEVTILRGRSKLIGDEF 190 (277)
Q Consensus 167 ei~~~iq~eV~~i~~dv~~i~~dv 190 (277)
+++.+++..|.+.+.++.-..+|+
T Consensus 209 ~~~~~~~qq~e~f~~~~~p~~e~~ 232 (273)
T 3s84_A 209 ELGGHLDQQVEEFRRRVEPYGENF 232 (273)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHH
Confidence 346677777777776665554444
No 98
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=52.23 E-value=64 Score=23.34 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHH
Q 023768 129 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 203 (277)
Q Consensus 129 Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~k-----lde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~K 203 (277)
.+...++++.+....|...-..|.+.++.|... -+.-.+.-...+..+..+..-+..|...+...-...+.-|.+
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~ 91 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777776332 233333344455555555555555555555555555555554
Q ss_pred HH
Q 023768 204 LI 205 (277)
Q Consensus 204 i~ 205 (277)
+.
T Consensus 92 ~A 93 (98)
T 3gwk_C 92 IA 93 (98)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 99
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=52.16 E-value=12 Score=22.85 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhchhhhhhHHHHH
Q 023768 170 QATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 170 ~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
.+.++||.++++.+..+.++++.+
T Consensus 3 yqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHHHhcc
Confidence 467888888888777776666543
No 100
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=51.64 E-value=91 Score=24.90 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 163 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kld 163 (277)
...++++=+..+++=|-+|++--+.|.|--+++++.+.
T Consensus 32 ~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQr 69 (114)
T 2xzr_A 32 IDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQR 69 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHH
Confidence 45566666777777777777666666665555544433
No 101
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=51.42 E-value=61 Score=23.09 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=35.4
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
.+++..+..++..++.-+..+..+|..=+.-+++|+.+.+.+..-|
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 54 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDV 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456677777777777788888888888888888888877776655
No 102
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.37 E-value=1.2e+02 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 189 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
|.+.+...+..|..++..++....-...-+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666667777777777776666665555544
No 103
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=51.29 E-value=62 Score=22.93 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.4
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
.+++..+..++..++.-+..+..+|..=+.-+++|+++.+.+..-|.
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~ 57 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVE 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 44567777777777888888888888888889999988887776553
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=50.84 E-value=78 Score=38.05 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=5.5
Q ss_pred HHHHHHHhhhchhhh
Q 023768 172 TQEEVTILRGRSKLI 186 (277)
Q Consensus 172 iq~eV~~i~~dv~~i 186 (277)
.++++.++...+...
T Consensus 2033 ~~~~L~~le~~l~~L 2047 (3245)
T 3vkg_A 2033 IVATITALEKSIATY 2047 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 105
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=50.23 E-value=43 Score=23.67 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=35.8
Q ss_pred HHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHH
Q 023768 174 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 220 (277)
Q Consensus 174 ~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~ 220 (277)
+++..+..++..++.-+..+..+|..=+.-+++|+.+.+.+..-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~ 55 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQ 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777778888888888888899999888877766643
No 106
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=50.03 E-value=33 Score=36.67 Aligned_cols=22 Identities=14% Similarity=0.212 Sum_probs=8.8
Q ss_pred CCCccchhHhhhhHHHHHHHhh
Q 023768 24 EGRLSSVSDAVGGTLKIVSKLI 45 (277)
Q Consensus 24 ~gkL~d~~~~l~g~~k~~~k~~ 45 (277)
.|+++-+...+..-+..+...+
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l 673 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTL 673 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHH
Confidence 3445555554444444444433
No 107
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=50.00 E-value=93 Score=24.57 Aligned_cols=70 Identities=9% Similarity=0.098 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..++.|++.....=..||.|+..+.+--+|
T Consensus 32 ~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 32 LTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555555544443211111111123455677777778887777777888888877665444
No 108
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=48.22 E-value=57 Score=24.60 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHH
Q 023768 188 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 219 (277)
Q Consensus 188 ~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~ 219 (277)
.+|+.=..++..|+.|++++..+-..+|.-+.
T Consensus 51 ~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 51 NEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555554443
No 109
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=47.67 E-value=44 Score=32.85 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=43.4
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhh---hhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHH
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 222 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~---i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc 222 (277)
.+|-.+|.+..+...-.++++.+-+++...+.+ -+.|.+.+...+..|..++..++....-...-+..++
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l 105 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKI 105 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444455555555555544433 3456777888888888888888887777666665553
No 110
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=47.21 E-value=40 Score=31.59 Aligned_cols=36 Identities=6% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
.+.+..+.++.++++..+-+.++..++.++.++...
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhc
Confidence 444445555555555555555555555555554443
No 111
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.43 E-value=66 Score=25.27 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhh
Q 023768 139 DVYSSISAAQRQLSSKITSVDRD 161 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~k 161 (277)
||...|+.+-..|.+-++.+-..
T Consensus 29 QVQqELs~tfarLc~~Vd~t~~e 51 (96)
T 1t3j_A 29 QVQQEMATTFARLCQQVDMTQKH 51 (96)
T ss_dssp ------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 112
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=45.42 E-value=67 Score=23.06 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kl 162 (277)
|+.....|....++|.+.++.++..+
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v 35 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSL 35 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444433
No 113
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=45.38 E-value=76 Score=22.22 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=28.7
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhch
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 183 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv 183 (277)
-.+|+.++..|...| .--..+...+++|.++...+.+++......+
T Consensus 9 D~~Ld~L~~~v~~lk----~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l 54 (66)
T 1n7s_D 9 DENLEQVSGIIGNLR----HMALDMGNEIDTQNRQIDRIMEKADSNKTRI 54 (66)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 355666666665433 3344556778888888777777776555543
No 114
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.29 E-value=82 Score=22.57 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHH-HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 140 VYSSISAAQRQLSSKITSVDRDVNKIVE-ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 140 Vs~sL~~tKkhLsqRId~vD~klde~~e-i~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
+...|+..|.+-..-+++--..++..-. =.+.++..+..=..++...+.+|..++..|..|+..|+.+.
T Consensus 7 L~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 7 CTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4555666666655554443333332211 12334555666666777788889999999999999888653
No 115
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=45.29 E-value=85 Score=28.15 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 166 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 166 ~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.+-.....-.++.+.+|+.....+|..++..|...|.+|+.++.
T Consensus 104 ~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 104 TKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhh
Confidence 33455566678999999999999999999999999999999874
No 116
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=44.91 E-value=91 Score=22.96 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
++.=.+++..+..++..++.-+..+..+|..=+.-+++|+.+.+.+...|
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v 65 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344567777777777888888888888888888999988877766655
No 117
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=44.17 E-value=90 Score=23.60 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
..+.||..+++.++....+++.+...-..+
T Consensus 31 ~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666665544443
No 118
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=43.74 E-value=65 Score=24.09 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=24.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 131 NSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsq---RId~vD~klde~~ei~~~iq~eV~~ 178 (277)
++|++ +.++.+.|..-..+|.+ ||+.++..+++-.+.++..+.++..
T Consensus 16 ~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 16 EGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp ---CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 66666666666544443 5555555565555555555544433
No 119
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=43.59 E-value=1.2e+02 Score=23.94 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=54.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~v--D~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
...+........-+..|..+|+.. -+.+|++..-+..+++.|++...-+- -+|++.-+..|..|..++.....
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666677777777755 45678877777888888887777665 67899999999999999886543
No 120
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=43.56 E-value=95 Score=22.80 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 150 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 150 hLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+...|.+.+..++.+...-......+|..++..+..+..|++.....+.....|+..-+.
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666777788888888888888888888877777777775543
No 121
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=43.25 E-value=52 Score=23.11 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHH
Q 023768 160 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 198 (277)
Q Consensus 160 ~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~ 198 (277)
.+....++.++.|-+-|.++...++.+.-.|+.+++-|.
T Consensus 4 ~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 4 GEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666777788888888888888888876664
No 122
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=42.78 E-value=1.6e+02 Score=28.88 Aligned_cols=37 Identities=14% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 023768 115 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQL 151 (277)
Q Consensus 115 ~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhL 151 (277)
|.|+|.==.++..+-+..|...|++|+.+=+.++..+
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v 118 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYM 118 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6788888888888888888888888876665555433
No 123
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=42.02 E-value=1.7e+02 Score=25.42 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+..+++++..+|.++
T Consensus 58 ~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 58 LKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 124
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=41.61 E-value=1.1e+02 Score=23.81 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 164 e~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
+.-.-.++=.+++..+..++.++++-+..+..+|..=+.-+++||.|.+.+..-|
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v 65 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV 65 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 125
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=41.44 E-value=1e+02 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~kl 162 (277)
|++....+.....+|.+.++.|+..+
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~ 37 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTA 37 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555444443
No 126
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=41.39 E-value=1.2e+02 Score=23.80 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhH
Q 023768 143 SISAAQRQLSSKI 155 (277)
Q Consensus 143 sL~~tKkhLsqRI 155 (277)
-|...|++|..-+
T Consensus 22 eL~kQk~eL~~~l 34 (101)
T 1d7m_A 22 QLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 127
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=40.50 E-value=1.1e+02 Score=22.97 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHH
Q 023768 193 VRDIVQTLESKLIE 206 (277)
Q Consensus 193 v~~~V~~Le~Ki~~ 206 (277)
++..+.-||.|+.+
T Consensus 57 lE~~L~iLEAklsS 70 (73)
T 3pp5_A 57 LDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 44444444444443
No 128
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=40.50 E-value=79 Score=29.03 Aligned_cols=65 Identities=8% Similarity=0.192 Sum_probs=31.0
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 181 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~ 181 (277)
|-.-|.-++|..+++...+--++--..|...=..+..|+..+|+++++...-+..|.++|..++.
T Consensus 194 stDAVNv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 194 DTDAVNYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp TTSBCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccccchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446666776666655553333333333222333333334455555555555555555555443
No 129
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=40.39 E-value=72 Score=27.56 Aligned_cols=15 Identities=0% Similarity=0.222 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|...++.+.+-...|
T Consensus 20 lE~r~d~~~~~~~~l 34 (240)
T 2z0v_A 20 MERKIDVTNKVVAEI 34 (240)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555554
No 130
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=40.14 E-value=1.6e+02 Score=24.33 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=51.9
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHH
Q 023768 152 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 218 (277)
Q Consensus 152 sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV 218 (277)
..||+.+..++.+.+.+.+.......++.+.+.-+..|+..-.......|.|+..++.--..+..-+
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777888877888888888888899999888888888888888887655444433
No 131
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=40.07 E-value=92 Score=21.63 Aligned_cols=18 Identities=17% Similarity=0.292 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhhhchhh
Q 023768 168 ISQATQEEVTILRGRSKL 185 (277)
Q Consensus 168 i~~~iq~eV~~i~~dv~~ 185 (277)
++.+++.-++.++.-.+.
T Consensus 67 ~shel~tpl~~i~~~~e~ 84 (114)
T 3zcc_A 67 VSHDLRTPLTRIRLATEM 84 (114)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhHHHcChHHHHHHHHHH
Confidence 344444444444443333
No 132
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.92 E-value=1.4e+02 Score=23.81 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=21.5
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHH
Q 023768 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 217 (277)
Q Consensus 176 V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~G 217 (277)
++.++.++...+..-+.++..++.||-+=|.+|-.-..|+.-
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~S 78 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVS 78 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhh
Confidence 444444555555555555555555555555555444444433
No 133
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=39.82 E-value=1.6e+02 Score=28.05 Aligned_cols=37 Identities=8% Similarity=0.153 Sum_probs=28.2
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 157 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~ 157 (277)
-.||.+.+....+.|.+......+..+|+...++-..
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777778888888888888888888888665443
No 134
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=39.73 E-value=53 Score=22.21 Aligned_cols=29 Identities=10% Similarity=0.416 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 023768 139 DVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (277)
Q Consensus 139 qVs~sL~~tKkhLsqRId~vD~klde~~e 167 (277)
.+-+.++.-...|..||+.++.|+|...+
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34456677778899999999999988544
No 135
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=38.80 E-value=74 Score=23.94 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=27.6
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 148 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 148 KkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
.++..+-++.+...+..++.++..|.+|+..=-.=+..|..+++.+...|..--.|+
T Consensus 25 e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~ 81 (87)
T 1l4a_D 25 EDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKA 81 (87)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555554444444444444444444444333333
No 136
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=38.61 E-value=89 Score=22.16 Aligned_cols=53 Identities=11% Similarity=0.130 Sum_probs=29.8
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 153 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 153 qRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+|++.-.++++++..+..+|.+-=..+-.|+..=+.-+...+.++...+.-++
T Consensus 2 ~rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~ 54 (65)
T 1gl2_C 2 SHMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLS 54 (65)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHH
Confidence 45566666666666666666665555555555555555555555555555444
No 137
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=38.45 E-value=31 Score=26.76 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=16.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
..|..||+.+-.|.++|..-....|+.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999888888877666666555
No 138
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=38.12 E-value=99 Score=30.31 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 023768 144 ISAAQRQLSSKITSVDRDVNKIVEISQATQE 174 (277)
Q Consensus 144 L~~tKkhLsqRId~vD~klde~~ei~~~iq~ 174 (277)
+...+|.+..+++.+-.+.++ ++++|..
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~---~sk~i~~ 69 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINI---CSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 455667777777766666544 4555543
No 139
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=37.21 E-value=51 Score=30.65 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHH
Q 023768 183 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 221 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~L 221 (277)
+.....|++.+...|.+|+..+.++.+=+-.-.+|+.+|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 419 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH
Confidence 355677788888888888888888766554455666544
No 140
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=37.16 E-value=16 Score=26.12 Aligned_cols=42 Identities=14% Similarity=0.303 Sum_probs=27.2
Q ss_pred eeEEecccCCCchHHHhhhhHHHHHHHHHHhhhhHHHHHHHHH
Q 023768 106 GYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 148 (277)
Q Consensus 106 gYmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tK 148 (277)
-++.|||+.-+|-.+-...||. +-.-|..=...+...|..-|
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~-c~~li~~f~~~~~~~l~~~~ 59 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK-CVRILKQFHKDLERELLRRH 59 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC-CHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCCcCCcEeEHHHCC-CHHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999993 33333333344444444333
No 141
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=36.67 E-value=1.2e+02 Score=32.39 Aligned_cols=8 Identities=13% Similarity=-0.089 Sum_probs=4.6
Q ss_pred ccceeecc
Q 023768 16 ILTSVLAK 23 (277)
Q Consensus 16 ~~GSvl~k 23 (277)
|+|.|.+.
T Consensus 585 yag~V~Y~ 592 (1184)
T 1i84_S 585 YAGKVTYN 592 (1184)
T ss_dssp SSCEEEEE
T ss_pred CCceEEec
Confidence 55666553
No 142
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.35 E-value=1.6e+02 Score=23.50 Aligned_cols=10 Identities=10% Similarity=0.242 Sum_probs=5.5
Q ss_pred EecccCCCch
Q 023768 109 WWKGWKLPDM 118 (277)
Q Consensus 109 wWKG~s~SDl 118 (277)
.--|+++.|+
T Consensus 56 r~~G~sL~eI 65 (142)
T 3gp4_A 56 RRAGLSIEAL 65 (142)
T ss_dssp HHTTCCHHHH
T ss_pred HHcCCCHHHH
Confidence 3446666654
No 143
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=36.34 E-value=2.1e+02 Score=24.65 Aligned_cols=15 Identities=0% Similarity=0.224 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
+..-|+..+.+-..|
T Consensus 71 i~~~I~~IA~QTNLL 85 (227)
T 1qu7_A 71 IISVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 144
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=35.77 E-value=2.4e+02 Score=27.68 Aligned_cols=11 Identities=9% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC
Q 023768 65 VSSVQQELSHV 75 (277)
Q Consensus 65 V~~L~~El~~L 75 (277)
+.+=+++.-.+
T Consensus 19 ~~~~~~~~~~~ 29 (461)
T 3ghg_B 19 LDKKREEAPSL 29 (461)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 34444444444
No 145
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=35.74 E-value=1.2e+02 Score=21.54 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+|+++...+.....+|.+.++.++..++.
T Consensus 10 ~l~~~A~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 10 EIRAKSQSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544444443
No 146
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=35.72 E-value=1.5e+02 Score=22.99 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=60.2
Q ss_pred hhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchh-------------------------------
Q 023768 136 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK------------------------------- 184 (277)
Q Consensus 136 qLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~------------------------------- 184 (277)
+|......+..--.+|.++++.+..++.+..+....++. +.. ..+.+
T Consensus 5 ~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~-l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v 82 (133)
T 1fxk_C 5 EIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSD-IQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI 82 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence 455566666677777888888888877776666555554 221 12211
Q ss_pred --hhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 185 --LIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 185 --~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
.+.+.++.++..+..|+..++.++..-.+...-+..+++-++.+
T Consensus 83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566777888888888888888877777777777776666543
No 147
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=34.43 E-value=1.2e+02 Score=21.52 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhhhhHHHh
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIEGKQDITT 215 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn 215 (277)
++.+|+.=...+..|+.|.+.+..+-..++
T Consensus 29 mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~ 58 (64)
T 3b5n_D 29 TGKELDSQQKRLNNIEESTDDLDINLHMNT 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444444443
No 148
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=33.64 E-value=1.2e+02 Score=28.17 Aligned_cols=54 Identities=9% Similarity=0.008 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhH--HHhHHHHHHH
Q 023768 169 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD--ITTLGVKKLC 222 (277)
Q Consensus 169 ~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd--~tn~GV~~Lc 222 (277)
....++++.++.+-+..++.-+.++-.+|-.=..-++.+-..|. .+|..+.-=|
T Consensus 381 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (463)
T 2xz3_A 381 IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWLYIRLGFQSLCPTINEPC 436 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHhCcCccchhhcCCc
Confidence 34444444445555555555555555555444444555555555 5555554333
No 149
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=33.43 E-value=2e+02 Score=23.50 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=29.1
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
.++.+..-+.-+.++++...+++..-...+.++|...|+.+|+.
T Consensus 12 l~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l 55 (216)
T 2i0m_A 12 LEQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQG 55 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHH
Confidence 45556666666667777777777665666777777777776664
No 150
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=33.36 E-value=8.6 Score=33.34 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=10.7
Q ss_pred eeeEccCccceee
Q 023768 9 TFLVGAGILTSVL 21 (277)
Q Consensus 9 ~iLvGAG~~GSvl 21 (277)
+++||||++|+.+
T Consensus 7 ViIVGaGpaGl~~ 19 (397)
T 3oz2_A 7 VLVVGGGPGGSTA 19 (397)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 6899999999754
No 151
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.88 E-value=4.5e+02 Score=28.05 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
+.+-|+.+-+.++.+-.. ..-++.+..++..++.++++..+-.+...+|..++
T Consensus 958 ~~~e~~~L~~~l~~le~~-~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMS-EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555665555555443 22223344444444444444444443333333333
No 152
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=32.75 E-value=1.8e+02 Score=22.73 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 130 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 130 v~sv~kqLeqVs~sL~~tKkhLsqRId~vD-~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
+....++|++.-+.|...=..|..+-++|+ +.=++........++-+..++.-.+.....|.-|+..|+-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456678999999999999999999999998 2223333444444555555555555566666666666666654
No 153
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=32.48 E-value=2.1e+02 Score=23.45 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
+|+.||..+..-..+..+.|.-..++|.--|...-- |.- .=++=| .+-..++.|..+...+...++.|..+.
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RLe~Ef~~~~P--d~A-----~e~NPv-~Ll~~LsaIk~ry~~L~~q~~~iaaeQ 73 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRLEYEIKTNHP--DSA-----SEKNPV-TLLKELSVIKSRYQTLYARFKPVAVEQ 73 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------------CCTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCC--ccc-----cccChH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888888877777654433210 110 000001 233345666677777776666666666
Q ss_pred HHHhhhhHHHhHHHHHHHHHHH
Q 023768 205 IEIEGKQDITTLGVKKLCDRAR 226 (277)
Q Consensus 205 ~~ie~kQd~tn~GV~~Lc~~~~ 226 (277)
.+.-.+-..+..+...+.|-.+
T Consensus 74 ke~~d~ir~tL~~tm~miQ~LQ 95 (123)
T 4aj5_K 74 KESKSRICATVKKTMNMIQKLQ 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444555555566655544
No 154
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=32.45 E-value=2.7e+02 Score=25.12 Aligned_cols=67 Identities=15% Similarity=0.283 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHH-HHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQL-SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 195 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhL-sqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~ 195 (277)
..|.+-.++|...|+-+ .++|.+ ..-|..+|.|+++...+-+.+-+.+..+..|-.....++..|+.
T Consensus 152 ~~Lkk~~~~i~~~LelL-----~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~ 219 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFL-----NIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDD 219 (242)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44666666666666543 234443 45677788888887777777777777776665555555555543
No 155
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.31 E-value=1.5e+02 Score=21.91 Aligned_cols=32 Identities=6% Similarity=-0.012 Sum_probs=15.8
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLS 152 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLs 152 (277)
|+=-.|.++...+...-+++.+.|...+..+.
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~ 42 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQLESRAQ 42 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555544444443
No 156
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=32.29 E-value=3e+02 Score=25.33 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcC
Q 023768 61 LLAEVSSVQQELSHV 75 (277)
Q Consensus 61 l~aQV~~L~~El~~L 75 (277)
|...+-...+..|.+
T Consensus 62 l~~~i~~~~~~ak~h 76 (346)
T 2nrj_A 62 LPGRIVQDQKNARAH 76 (346)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 157
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=31.17 E-value=1.4e+02 Score=21.17 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=9.6
Q ss_pred HHHHHhHHHHHHHHh
Q 023768 194 RDIVQTLESKLIEIE 208 (277)
Q Consensus 194 ~~~V~~Le~Ki~~ie 208 (277)
+++|..||.|+.+.+
T Consensus 47 ~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 47 RERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667777766544
No 158
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.59 E-value=1.8e+02 Score=22.20 Aligned_cols=30 Identities=10% Similarity=0.210 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhchhhhhhHHHHHHHHHHhH
Q 023768 171 ATQEEVTILRGRSKLIGDEFQSVRDIVQTL 200 (277)
Q Consensus 171 ~iq~eV~~i~~dv~~i~~dv~~v~~~V~~L 200 (277)
.|+++++.++.+.-.+...++.-+..-..|
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL 57 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333333333
No 159
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=30.45 E-value=10 Score=33.21 Aligned_cols=13 Identities=38% Similarity=0.521 Sum_probs=10.2
Q ss_pred eeeEccCccceee
Q 023768 9 TFLVGAGILTSVL 21 (277)
Q Consensus 9 ~iLvGAG~~GSvl 21 (277)
++|||||++|..+
T Consensus 4 V~IVGaGpaGl~~ 16 (412)
T 4hb9_A 4 VGIIGAGIGGTCL 16 (412)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECcCHHHHHH
Confidence 5678999999643
No 160
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=30.42 E-value=1.6e+02 Score=21.60 Aligned_cols=48 Identities=13% Similarity=0.260 Sum_probs=32.6
Q ss_pred chHHHhhh--hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 117 DMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 117 DlM~VTkr--~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+|--.||| .|++++.+|..++|.|-+.|....+.--.|=+.+.+=||-
T Consensus 7 EF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~~ 56 (64)
T 3hrn_A 7 EFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDG 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcc
Confidence 34445665 6778888888888888888877777666665555555544
No 161
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=30.39 E-value=48 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=35.4
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHhHhhhhhhHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~s-------L~~tKkhLsqRId~vD~klde~~ 166 (277)
+-+++-.+|...|+..|-.|.+. +...=.++.+||++++++.|+..
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~ 88 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGF 88 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44577788998888888887654 44455678899999999998864
No 162
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=30.39 E-value=90 Score=21.53 Aligned_cols=32 Identities=13% Similarity=0.385 Sum_probs=19.5
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhH
Q 023768 131 NSVARQLEDVYSSISAAQRQLSSKITSVDRDV 162 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsqRId~vD~kl 162 (277)
..+-.+.+.+|+.|-+-=.....|||.|+..+
T Consensus 16 ~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 16 QQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 33444455677777777777888887777654
No 163
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.14 E-value=1.9e+02 Score=22.19 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
.+...+|.+++..+..+|.-++.
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 164
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.98 E-value=2.7e+02 Score=24.07 Aligned_cols=103 Identities=13% Similarity=0.198 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhc-----------hhhhhhHHHHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-----------SKLIGDEFQSVR 194 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~d-----------v~~i~~dv~~v~ 194 (277)
+..-+..+-.-|+...++=..-...|..-|+.+..+..+...-....+.++...+.. ++.+..++..++
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~ 101 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTR 101 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555566666666655555555555555554444333 344455566666
Q ss_pred HHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHhh
Q 023768 195 DIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 228 (277)
Q Consensus 195 ~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~~ 228 (277)
.....|-.+|-.+|-..|-.-.-...+|.-++.+
T Consensus 102 ~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~ 135 (189)
T 2v71_A 102 AIKEQLHKYVRELEQANDDLERAKRATIMSLEDF 135 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH
Confidence 6666666666667776666666666666555443
No 165
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=29.86 E-value=65 Score=26.27 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=18.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV 176 (277)
..|..||+.+-.|.++|..-....|+.|
T Consensus 25 edLrrrIe~LkrKV~~Qvq~i~~Lq~nV 52 (119)
T 1lwu_A 25 RELERRIIHLQRRINMQLQQLTLLQHNI 52 (119)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888777777766665555544
No 166
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.83 E-value=78 Score=29.50 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=5.8
Q ss_pred HHHHHhHHHHHHHHh
Q 023768 194 RDIVQTLESKLIEIE 208 (277)
Q Consensus 194 ~~~V~~Le~Ki~~ie 208 (277)
+..|..|+.+|..++
T Consensus 39 ~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 39 QQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333444443333
No 167
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.79 E-value=2.4e+02 Score=23.36 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq 173 (277)
.+.++..+..+-..|..-..++...+++...++..+.
T Consensus 70 ~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 70 AERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555444444333
No 168
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=29.54 E-value=1.8e+02 Score=21.85 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=15.6
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhh
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRD 161 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~k 161 (277)
..|.++...+..+|.-+.+-||.+=+.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~R 31 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLER 31 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345566666666666666666555433
No 169
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=29.31 E-value=22 Score=31.69 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=35.5
Q ss_pred HhhhhHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHhHhhhhhhHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~-------sL~~tKkhLsqRId~vD~klde~~ 166 (277)
+-+++-.+|...|+..|..+.+ ++...=.+|.+||+++.+++|+..
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~ 88 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTK 88 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888888887743 355556678899999999998874
No 170
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=29.01 E-value=88 Score=21.94 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHh
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKIT 156 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId 156 (277)
=.+||.+++..+.++-.++.+.++++...|.
T Consensus 16 TNeAV~~L~~g~~~la~Av~~iQ~~IN~~i~ 46 (51)
T 3kpe_A 16 TNKAVVSLSNGVSVLTSKVLDLKNYIDKQLL 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3578999999999999999999998887653
No 171
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=28.69 E-value=3.2e+02 Score=24.49 Aligned_cols=37 Identities=3% Similarity=0.058 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 126 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 126 m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
|..+|+.+...+..+......+-.+|+.+|++ .+++.
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~ 168 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRH 168 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHH
Confidence 55677777888777887777777788766654 34443
No 172
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=28.68 E-value=1.4e+02 Score=23.08 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHhhh
Q 023768 125 SLSDACNSVARQLE 138 (277)
Q Consensus 125 ~m~~Av~sv~kqLe 138 (277)
.+...|-++-+.|+
T Consensus 22 ~aEsliy~~e~~L~ 35 (120)
T 2p32_A 22 GLESYAFNLKQTIE 35 (120)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 33334444444443
No 173
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=28.48 E-value=1.9e+02 Score=21.86 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHH
Q 023768 125 SLSDACNSVARQLEDVYSSISAAQRQ 150 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~sL~~tKkh 150 (277)
++.+|..+|.+.+..++.+|.....-
T Consensus 13 sFN~A~~~i~~g~~tts~AL~kiQdV 38 (77)
T 2bez_C 13 QFNKAISQIQESLTTTSTALGKLQDV 38 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777666666554433
No 174
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=28.47 E-value=2.1e+02 Score=26.43 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHHH-HHHHHHHHhHhhhhhh
Q 023768 122 TRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRD 161 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL~-~tKkhLsqRId~vD~k 161 (277)
|-.++-+-++....-.+.+++.+. ..+..|.+.|+.+-..
T Consensus 91 ~~~~I~~Y~~~f~syy~~L~~~~d~~d~~~l~~~L~~L~~~ 131 (346)
T 2nrj_A 91 TLNGIVEYDTTFDNYYETMVEAINTGDGETLKEGITDLRGE 131 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 334444444433333333333332 1334444444444433
No 175
>1jsd_B Haemagglutinin (HA2 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: h.3.1.1 PDB: 1jsh_B* 1jsi_B*
Probab=28.27 E-value=66 Score=27.70 Aligned_cols=46 Identities=7% Similarity=0.312 Sum_probs=34.9
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHhHhhhhhhHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL-------~~tKkhLsqRId~vD~klde~~ 166 (277)
+-+++-.+|...|+..|-.+.+.. ...=.++.+||.++..+.|+..
T Consensus 36 ad~~sTQ~aid~It~K~N~~iekmn~qf~~i~~ef~e~e~ri~~l~~~vdD~~ 88 (176)
T 1jsd_B 36 ADSDSTQKAIDKITSKVNNIVDKMNKQYGIIDHEFSEIETRLNMINNKIDDQI 88 (176)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999998888876543 3334578899999999988864
No 176
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=28.24 E-value=1.1e+02 Score=21.23 Aligned_cols=6 Identities=17% Similarity=0.534 Sum_probs=2.3
Q ss_pred HhHhhh
Q 023768 153 SKITSV 158 (277)
Q Consensus 153 qRId~v 158 (277)
+|++.+
T Consensus 37 ~rle~l 42 (47)
T 1aq5_A 37 KRIEAL 42 (47)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 177
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.99 E-value=1.5e+02 Score=23.51 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=7.0
Q ss_pred hhHHHHHHHHHHhH
Q 023768 187 GDEFQSVRDIVQTL 200 (277)
Q Consensus 187 ~~dv~~v~~~V~~L 200 (277)
..||..|+..|..|
T Consensus 76 ~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 76 KYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHh
Confidence 34455555555555
No 178
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=27.96 E-value=1.6e+02 Score=20.76 Aligned_cols=28 Identities=7% Similarity=0.064 Sum_probs=14.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhHhhh
Q 023768 131 NSVARQLEDVYSSISAAQRQLSSKITSV 158 (277)
Q Consensus 131 ~sv~kqLeqVs~sL~~tKkhLsqRId~v 158 (277)
...++.+.+..+.|...-..|.+.++.|
T Consensus 12 ~~~A~~~~~~~~~l~~~l~~L~~~~~~L 39 (97)
T 2vs0_A 12 RAKSQSYGQGSDQIRQILSDLTRAQGEI 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554
No 179
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=27.87 E-value=3.9e+02 Score=25.14 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=30.3
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 164 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde 164 (277)
+.|..+-..-..+..++.++++.|...++.+.+.|+..-+++..
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~ 107 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINN 107 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777788888888877777777766554444433
No 180
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=27.65 E-value=2.3e+02 Score=22.42 Aligned_cols=67 Identities=10% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
.+-.....-.+...+.|...|..|..+|..+..++++..+.......+=..+..+++....|++.+.
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 181
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=27.41 E-value=1.5e+02 Score=24.29 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=27.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 151 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 151 LsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
+.+-|+++.++||.+.- +.+....++|.. -|..+..-+..|+.+|.++...|.+
T Consensus 8 ~K~Eiq~L~drLD~~~r-----Klaaa~~rgd~~----~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRH-----QQADLSLVEAAD----KYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHSCTTTCTT----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHhCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665411 112233344432 2444555556666777777666654
No 182
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.18 E-value=2e+02 Score=21.55 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHH
Q 023768 147 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 213 (277)
Q Consensus 147 tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~ 213 (277)
-|.+|..-|+++-.-.++.+.=-+.=...=..+..|+..++.|++..-..=..||.|++++.+--.|
T Consensus 15 e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f 81 (86)
T 3swk_A 15 DKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433221111111234556677778888888888888999999987665443
No 183
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.16 E-value=1.4e+02 Score=20.59 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=11.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHh
Q 023768 185 LIGDEFQSVRDIVQTLESKLIEIE 208 (277)
Q Consensus 185 ~i~~dv~~v~~~V~~Le~Ki~~ie 208 (277)
++..|-+.++.++..|...|.++|
T Consensus 21 qlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHH
Confidence 334444444444545544444444
No 184
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.97 E-value=1.1e+02 Score=22.68 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=24.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 193 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v 193 (277)
.+|.-|+...++.+|+.+++...=+.++..++.-+..+..-+..+
T Consensus 17 ~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 17 VELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666666666665544444444433
No 185
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=26.82 E-value=3e+02 Score=23.58 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhc
Q 023768 61 LLAEVSSVQQELSH 74 (277)
Q Consensus 61 l~aQV~~L~~El~~ 74 (277)
+..+-+.+.+|+..
T Consensus 44 l~~~~~~f~~el~~ 57 (323)
T 3edv_A 44 LQERFREFARDTGN 57 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666777777654
No 186
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=26.39 E-value=39 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=34.8
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHhHhhhhhhHHHHH
Q 023768 121 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~s-------L~~tKkhLsqRId~vD~klde~~ 166 (277)
+-+++-.+|...|+..|..+.+. |...=.++.+||.+|+++.|+..
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~ 88 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLR 88 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677789999999888877543 33344588899999999988864
No 187
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=26.32 E-value=1.4e+02 Score=23.05 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhh
Q 023768 189 EFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 189 dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
|-.+++..+.....||+.+...
T Consensus 56 D~~s~~~~L~e~~~kid~L~~e 77 (98)
T 2ke4_A 56 DPASLEPQIAETLSNIERLKLE 77 (98)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555544443
No 188
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=26.13 E-value=41 Score=20.13 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHhhhhHHHHH
Q 023768 122 TRRSLSDACNSVARQLEDVYSSI 144 (277)
Q Consensus 122 Tkr~m~~Av~sv~kqLeqVs~sL 144 (277)
|+|-+++++..|+..+.+|=++|
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaL 24 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAAL 24 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888888876665
No 189
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=26.12 E-value=1.4e+02 Score=25.60 Aligned_cols=107 Identities=7% Similarity=0.081 Sum_probs=0.0
Q ss_pred chHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHH
Q 023768 117 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 196 (277)
Q Consensus 117 DlM~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~ 196 (277)
|-+|.+--.|.++...-...|.+=...|...+..|.+..+.+...++...+-....++=... .+...+ |++.+=..
T Consensus 34 e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~--~~~~~~--diD~~v~~ 109 (174)
T 2p22_A 34 DKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST--SHVDDE--DVNSIAVA 109 (174)
T ss_dssp HHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS--SCCCSS--CGGGTEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCC--ChhhhhcC
Q ss_pred HHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 197 VQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 197 V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
-..+-..+-.+-+.......-||+|.+.++.
T Consensus 110 ~~~l~~Qll~l~Aed~AieDaIy~L~~al~~ 140 (174)
T 2p22_A 110 KTDGLNQLYNLVAQDYALTDTIECLSRMLHR 140 (174)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 190
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=25.83 E-value=12 Score=29.03 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=39.7
Q ss_pred ceeeeEccCccceeeccCCCccchhHhhhhHHHHHHHhhhcCCCCCCCcc-hhhH---HHHHHHHHHHHHhcC--CCceE
Q 023768 7 KLTFLVGAGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRK-LFND---LLAEVSSVQQELSHV--PRSVI 80 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k~gkL~d~~~~l~g~~k~~~k~~k~~d~~~~~~~-~~~~---l~aQV~~L~~El~~L--sr~iT 80 (277)
||+++.|+|++.|++++ |+-++.....=-. ....-+.++..+. +.-| +..||+..-.+++.. ..||.
T Consensus 5 kIll~Cg~G~sTS~l~~--k~~~~~~~~gi~~-----~i~a~~~~~~~~~~~~~Dvil~~pqv~~~~~~~~~~~~~~~v~ 77 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVS--KMRAQAEKYEVPV-----IIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVE 77 (106)
T ss_dssp EEEEECSSSTTTHHHHH--HHHHHHHHSCCSE-----EEEEECSSSTTHHHHHCSEEEECTTSGGGHHHHHHHSSSSCCC
T ss_pred EEEEECCCchhHHHHHH--HHHHHHHHCCCCe-----EEEEecHHHHHhhccCCCEEEEccchhhhHHHHHHHhcCCCce
Confidence 79999999999997776 4554432100000 0001111111110 1123 566888888888886 45777
Q ss_pred EEeC
Q 023768 81 IETS 84 (277)
Q Consensus 81 vvn~ 84 (277)
++++
T Consensus 78 vI~~ 81 (106)
T 1e2b_A 78 VIDS 81 (106)
T ss_dssp BCCH
T ss_pred EECH
Confidence 7775
No 191
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=25.63 E-value=13 Score=33.84 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=12.2
Q ss_pred ceeeeEccCccceeecc
Q 023768 7 KLTFLVGAGILTSVLAK 23 (277)
Q Consensus 7 kv~iLvGAG~~GSvl~k 23 (277)
||+|| |||++|+.+++
T Consensus 18 kilvl-GaG~vG~~~~~ 33 (365)
T 3abi_A 18 KVLIL-GAGNIGRAIAW 33 (365)
T ss_dssp EEEEE-CCSHHHHHHHH
T ss_pred EEEEE-CCCHHHHHHHH
Confidence 55555 99999998764
No 192
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.21 E-value=92 Score=24.56 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.1
Q ss_pred HHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 172 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 172 iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
+.++++.++..++.+..+-+.++.-+..||.++...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~ 45 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERR 45 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999999999863
No 193
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=24.76 E-value=15 Score=34.28 Aligned_cols=15 Identities=40% Similarity=0.563 Sum_probs=13.6
Q ss_pred eeeEccCccceeecc
Q 023768 9 TFLVGAGILTSVLAK 23 (277)
Q Consensus 9 ~iLvGAG~~GSvl~k 23 (277)
+|+||+|.+|+|++.
T Consensus 20 ~IIVGsG~aG~v~A~ 34 (526)
T 3t37_A 20 IVIVGGGSAGSLLAA 34 (526)
T ss_dssp EEEECCSHHHHHHHH
T ss_pred EEEECccHHHHHHHH
Confidence 599999999999885
No 194
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=24.48 E-value=1.3e+02 Score=25.57 Aligned_cols=67 Identities=9% Similarity=0.158 Sum_probs=41.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 134 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 134 ~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
-.=|+.+-+.....-.++..+|+.+++.+-+.. ......++..++.++-.++.-+...+.++..|..
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~--~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~ 240 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERP--EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYR 240 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777777777778888888877754321 2233445666677767777777777766666653
No 195
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=24.26 E-value=2e+02 Score=20.56 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 173 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq 173 (277)
+=++.+.-+|+.|.+.+...|..| .-+|.++-+.++++..+-
T Consensus 9 eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v 50 (56)
T 3e7k_A 9 ERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHH
Confidence 446777888888888888887754 456777766666665543
No 196
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.98 E-value=2.4e+02 Score=21.45 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHHHHHHHhHhhh
Q 023768 137 LEDVYSSISAAQRQLSSKITSV 158 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~v 158 (277)
|.+|...|..++.-+.+-|+.|
T Consensus 32 l~~vq~eldeVk~IM~~NI~kv 53 (96)
T 1sfc_A 32 LQQTQAQVDEVVDIMRVNVDKV 53 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 197
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=23.98 E-value=3.5e+02 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.0
Q ss_pred HhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhh
Q 023768 121 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 159 (277)
Q Consensus 121 VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD 159 (277)
-.||.+.+....+.+.+......+..+|+...++-...+
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~ 152 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTER 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777788888888888889999999998876655443
No 198
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=23.95 E-value=25 Score=34.85 Aligned_cols=10 Identities=30% Similarity=0.923 Sum_probs=8.3
Q ss_pred heeeEEeccc
Q 023768 104 GYGYVWWKGW 113 (277)
Q Consensus 104 GYgYmwWKG~ 113 (277)
..+|.||.||
T Consensus 462 ~~~~~~~~G~ 471 (546)
T 1fgj_A 462 PGGWTYTEGW 471 (546)
T ss_dssp GGGTSSSSTH
T ss_pred CCccceecch
Confidence 3469999999
No 199
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.90 E-value=77 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=7.6
Q ss_pred HHHHHHhHHHHHHHHh
Q 023768 193 VRDIVQTLESKLIEIE 208 (277)
Q Consensus 193 v~~~V~~Le~Ki~~ie 208 (277)
++.-+..||+|++.+.
T Consensus 21 LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 21 FEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555443
No 200
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=23.88 E-value=53 Score=28.07 Aligned_cols=66 Identities=14% Similarity=0.188 Sum_probs=38.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 133 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 133 v~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
+-.=|+.+.+.....-++|..+++.+++++-+. ......++..++.++-.++.-+...+.++..|.
T Consensus 149 l~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~---~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~ 214 (264)
T 3nvo_A 149 LVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ---QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLA 214 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344456666666666677777777777766432 233344566666666666666666666666654
No 201
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.77 E-value=1.8e+02 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAA 147 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~t 147 (277)
|+.++.-++.+-+.+..+...|..+
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~~~ 190 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLSRT 190 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333333333333
No 202
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=23.50 E-value=1.9e+02 Score=29.99 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=56.9
Q ss_pred eEEecccCCCchHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHHhHhhhh------hhHHHHHHHHHHHHH-HHH
Q 023768 107 YVWWKGWKLPDMMFATRRSLSDACNSVARQLED--VYSSISAAQRQLSSKITSVD------RDVNKIVEISQATQE-EVT 177 (277)
Q Consensus 107 YmwWKG~s~SDlM~VTkr~m~~Av~sv~kqLeq--Vs~sL~~tKkhLsqRId~vD------~klde~~ei~~~iq~-eV~ 177 (277)
--|||...|+++=|+=.|=++.-.-.++---|- -..++.-||- ..=+-.+| .++||..-.++.|++ |.+
T Consensus 486 srWwk~~~l~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~--~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~ 563 (785)
T 3s9v_A 486 RRWWKSSGFTDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKT--SNFTVILDDLYDAHGSLDDLKLFTESVKRWDLS 563 (785)
T ss_dssp HHHHHHTTTTSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHH--HHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSS
T ss_pred hHHHHHcCCCcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHcCch
Confidence 369999999988887667666555555543331 1223333332 22233333 467888888888876 333
Q ss_pred HhhhchhhhhhHHHHHHHHHHhHHHHHHHH
Q 023768 178 ILRGRSKLIGDEFQSVRDIVQTLESKLIEI 207 (277)
Q Consensus 178 ~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~i 207 (277)
.+..==+.++.=...+...++.++.++...
T Consensus 564 ~~~~Lpeymk~~f~aL~~~~nei~~~~~~~ 593 (785)
T 3s9v_A 564 LVDQMPQQMKICFVGFYNTFNDIAKEGRER 593 (785)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Confidence 332222344455666777777787776633
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.37 E-value=1.6e+02 Score=27.40 Aligned_cols=15 Identities=0% Similarity=0.102 Sum_probs=6.7
Q ss_pred HHHHHHHHHhHHHHH
Q 023768 190 FQSVRDIVQTLESKL 204 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki 204 (277)
|+.+++.|..|+.++
T Consensus 42 i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 42 VTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 204
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=23.29 E-value=1.7e+02 Score=21.97 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHhhh
Q 023768 123 RRSLSDACNSVARQLE 138 (277)
Q Consensus 123 kr~m~~Av~sv~kqLe 138 (277)
|.++...|-++.++|+
T Consensus 6 rN~aE~~iy~~e~~L~ 21 (113)
T 1ud0_A 6 SHMLESYAFNMKATVE 21 (113)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4555556666666665
No 205
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=23.15 E-value=2.5e+02 Score=27.80 Aligned_cols=97 Identities=16% Similarity=0.298 Sum_probs=56.6
Q ss_pred eEEecccCC-CchHHHhhhhHHHHHHHHHHhhh-hHH-HHHHHHHHHHHHhHhhhh------hhHHHHHHHHHHHHH-HH
Q 023768 107 YVWWKGWKL-PDMMFATRRSLSDACNSVARQLE-DVY-SSISAAQRQLSSKITSVD------RDVNKIVEISQATQE-EV 176 (277)
Q Consensus 107 YmwWKG~s~-SDlM~VTkr~m~~Av~sv~kqLe-qVs-~sL~~tKkhLsqRId~vD------~klde~~ei~~~iq~-eV 176 (277)
--|||...| +++=|+=.|-+..-.-.++---| |.| .++.-|| ...=+-.+| .++||+.-.++.|++ |.
T Consensus 250 ~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK--~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~ 327 (550)
T 3m00_A 250 SRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVK--TISMISIVDDTFDAYGTVKELEAYTDAIQRWDI 327 (550)
T ss_dssp HHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHH--HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHH--HHHHHHHHHHHccccCCHHHHHHHHHHHHhcCc
Confidence 469999998 57777666666554444443332 211 2232222 222222333 367888888888887 55
Q ss_pred HHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 177 TILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 177 ~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
+.+..==+.++.=...+-..++.+|.++.
T Consensus 328 ~~~~~LPeymK~~f~al~~~~~E~~~~~~ 356 (550)
T 3m00_A 328 NEIDRLPDYMKISYKAILDLYKDYEKELS 356 (550)
T ss_dssp GGGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443334455556777778888887764
No 206
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=23.09 E-value=61 Score=28.83 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=28.1
Q ss_pred HHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 173 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 173 q~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
+..|..+.-|+.+.+.||-..-..|..||.|+..+|.
T Consensus 3 ~~~v~~~st~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 3 QTTVDGNSTAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhhhchhhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 4456777788888888898888889999999988774
No 207
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.08 E-value=3.9e+02 Score=23.87 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHhhhhHHHH
Q 023768 125 SLSDACNSVARQLEDVYSS 143 (277)
Q Consensus 125 ~m~~Av~sv~kqLeqVs~s 143 (277)
+..+.+..+.+.++.+.+.
T Consensus 168 ~~~~~l~~l~~~i~~lE~~ 186 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDK 186 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555443
No 208
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=23.05 E-value=2.5e+02 Score=24.23 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHHhcC
Q 023768 57 LFNDLLAEVSSVQQELSHV 75 (277)
Q Consensus 57 ~~~~l~aQV~~L~~El~~L 75 (277)
.+.+|...++.++.....|
T Consensus 32 d~~~lE~r~d~~k~~~~kl 50 (256)
T 1zww_A 32 DFKEMERKVDVTSRAVMEI 50 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444888888888888776
No 209
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.95 E-value=89 Score=23.36 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 159 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 159 D~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
+..+.+..++++....++.+-...+..++..++.++
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444455555555555454445555544443
No 210
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.90 E-value=2.7e+02 Score=21.59 Aligned_cols=55 Identities=9% Similarity=0.012 Sum_probs=33.3
Q ss_pred HHHHHHHHh--hhchhhhhhHHH-HHHHHHHhHHHHHHHHh---hhhHHHhHHHHHHHHHH
Q 023768 171 ATQEEVTIL--RGRSKLIGDEFQ-SVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRA 225 (277)
Q Consensus 171 ~iq~eV~~i--~~dv~~i~~dv~-~v~~~V~~Le~Ki~~ie---~kQd~tn~GV~~Lc~~~ 225 (277)
++++.+..+ +.|-.++++.|+ .+......|..++..+. .+....+++...+-+|-
T Consensus 21 ~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ 81 (97)
T 1hs7_A 21 VLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQ 81 (97)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 444444444 345566677777 66666666666666332 36667777777776554
No 211
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.90 E-value=3.4e+02 Score=22.83 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 023768 124 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 124 r~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~ 165 (277)
.+..++.+.+.+.+.++...|..-+..|..+-..++.-.||.
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777777777766666666666666655553
No 212
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=22.84 E-value=1.1e+02 Score=21.94 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=23.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 154 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 154 RId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
||+.+..|-++ .+..+.++.+ ++++..++.-|..||..|.
T Consensus 26 rieelkkkwee-------lkkkieelgg-----ggevkkveeevkkleeeik 65 (67)
T 1lq7_A 26 RIEELKKKWEE-------LKKKIEELGG-----GGEVKKVEEEVKKLEEEIK 65 (67)
T ss_dssp SHHHHHHHHHH-------HHHHHHHTTS-----SSTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-------HHHHHHHhCC-----CcchhHHHHHHHHHHHHHh
Confidence 55555544443 3555555555 4567777777777776554
No 213
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=22.82 E-value=18 Score=33.66 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHH
Q 023768 167 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 206 (277)
Q Consensus 167 ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ 206 (277)
++...++++|.++... ++.++..+..||.|+.+
T Consensus 34 ~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~ 66 (385)
T 3p8q_A 34 QVSKQLQSDLMKVQEE-------LTKSGTRLFDLEQKLAS 66 (385)
T ss_dssp ----------------------------------------
T ss_pred CccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcc
Confidence 3455555556555444 44444444444455443
No 214
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.39 E-value=2.5e+02 Score=21.03 Aligned_cols=37 Identities=3% Similarity=0.059 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHH
Q 023768 168 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 204 (277)
Q Consensus 168 i~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki 204 (277)
....++.+..++...+..+...+..++..+..|+.++
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444333
No 215
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=22.34 E-value=18 Score=31.03 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=10.7
Q ss_pred eeeEccCccceee
Q 023768 9 TFLVGAGILTSVL 21 (277)
Q Consensus 9 ~iLvGAG~~GSvl 21 (277)
+++||||++|..+
T Consensus 5 V~IIGaG~~Gl~~ 17 (336)
T 1yvv_A 5 IAIIGTGIAGLSA 17 (336)
T ss_dssp EEEECCSHHHHHH
T ss_pred EEEECCcHHHHHH
Confidence 6899999998654
No 216
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.23 E-value=2.9e+02 Score=27.04 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHHHHHHHhHHHHHHHHhh
Q 023768 190 FQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 190 v~~v~~~V~~Le~Ki~~ie~ 209 (277)
+..|...+..||.++..++.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~ 132 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEE 132 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 217
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=22.15 E-value=2.9e+02 Score=23.98 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhhHHHhHHHHHHHHHHHh
Q 023768 165 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 227 (277)
Q Consensus 165 ~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd~tn~GV~~Lc~~~~~ 227 (277)
..+|++.|++-+.+-..|-++|..-=.+|++.|..+-..+.. ...+...-.-++.+|.|+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 10 ILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888777777888888877666665 44555555556889988863
No 218
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.07 E-value=1.8e+02 Score=21.12 Aligned_cols=69 Identities=13% Similarity=0.289 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHH
Q 023768 123 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 202 (277)
Q Consensus 123 kr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~ 202 (277)
|.+|.+++..+...+-... +.|+++ .+|-...-+=+..++........+++.++.-...|+.
T Consensus 14 R~~in~~f~~Lr~lvP~~~-----------------~~k~sK-~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~ 75 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVPSLQ-----------------GEKASR-AQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQ 75 (83)
T ss_dssp HHHHHHHHHHHHTTSGGGT-----------------TSCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCC-----------------CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhh
Q 023768 203 KLIEIEG 209 (277)
Q Consensus 203 Ki~~ie~ 209 (277)
++..+++
T Consensus 76 ~l~~L~~ 82 (83)
T 1nkp_B 76 QVRALGG 82 (83)
T ss_dssp HHHTCSC
T ss_pred HHHHhcC
No 219
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=22.05 E-value=26 Score=35.25 Aligned_cols=12 Identities=50% Similarity=1.157 Sum_probs=10.1
Q ss_pred hhheeeEEeccc
Q 023768 102 AVGYGYVWWKGW 113 (277)
Q Consensus 102 avGYgYmwWKG~ 113 (277)
.+-|||.||||.
T Consensus 521 ivty~~f~wkgk 532 (584)
T 4dpv_Z 521 IVTYSDFWWKGK 532 (584)
T ss_dssp CCEEEEEEEEEE
T ss_pred EEEEeeEEEccE
Confidence 467999999995
No 220
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.90 E-value=3.4e+02 Score=22.76 Aligned_cols=14 Identities=7% Similarity=0.197 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhc
Q 023768 61 LLAEVSSVQQELSH 74 (277)
Q Consensus 61 l~aQV~~L~~El~~ 74 (277)
|-..+.++|+||..
T Consensus 18 LeD~L~~~R~el~~ 31 (154)
T 2ocy_A 18 LEEQLNKSLKTIAS 31 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 221
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.71 E-value=1.5e+02 Score=20.47 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=20.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 023768 149 RQLSSKITSVDRDVNKIVEISQATQEEVTI 178 (277)
Q Consensus 149 khLsqRId~vD~klde~~ei~~~iq~eV~~ 178 (277)
..|...||++.+++...++--+.|.+++.-
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356777778887777777766666666544
No 222
>4f23_A Hemagglutinin, H16; sialic acid, glycolysation, membrane, viral P; HET: NAG; 1.70A {Influenza a virus} PDB: 4fiu_A*
Probab=21.63 E-value=77 Score=31.61 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHhHhhhhhhHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSI-------SAAQRQLSSKITSVDRDVNKIV 166 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL-------~~tKkhLsqRId~vD~klde~~ 166 (277)
|=|-+++=.+|...|+..|..|.+.. ..-=.+|..||++|++|+|+..
T Consensus 368 ~AAD~kSTQ~AId~It~k~N~iiekmn~qf~~i~~ef~~~e~ri~~l~~~~~D~~ 422 (515)
T 4f23_A 368 IAADKTSTQKAINEITTKINNIIEKMNGNYDSIRGEFNQVEKRINMIADRVDDAV 422 (515)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHTCCSCCSCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 44678999999999999888887653 2333578899999999999973
No 223
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=21.61 E-value=1.6e+02 Score=21.36 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=8.0
Q ss_pred HhHhhhhhhHHHHHHHH
Q 023768 153 SKITSVDRDVNKIVEIS 169 (277)
Q Consensus 153 qRId~vD~klde~~ei~ 169 (277)
.++-.++=.|++.+++.
T Consensus 10 ~~lr~lGfsL~eIk~~l 26 (99)
T 1q08_A 10 RHARQLGFSLESIRELL 26 (99)
T ss_dssp HHHHHTTCCHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHH
Confidence 34444455555544444
No 224
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=21.60 E-value=1.3e+02 Score=22.48 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=12.6
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQR 149 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKk 149 (277)
.+-|+-.|.++.+.++|+++|+.+-|+.+..
T Consensus 13 ~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEa 43 (71)
T 3bbp_D 13 AEFTKEELVQKLSSTTKSADHLNGLLRETEA 43 (71)
T ss_dssp ----------------CTTSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3568889999999999999999998887654
No 225
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=21.58 E-value=1.2e+02 Score=26.27 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHH
Q 023768 137 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 201 (277)
Q Consensus 137 LeqVs~sL~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le 201 (277)
|+.+.+....+-++|..+++.+++++-+. .....-.++..++.++-.++.-+...+.++..|.
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~~--~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~ 224 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLAG--YDREVMEKILGLRKTLVYFHKSLIANRDVLVLLK 224 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555555666666555554221 1223344556666666666666666666666654
No 226
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=21.54 E-value=3.5e+02 Score=22.38 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 023768 128 DACNSVARQLEDVYSSISAAQR 149 (277)
Q Consensus 128 ~Av~sv~kqLeqVs~sL~~tKk 149 (277)
+-|+.|...+++++..+....+
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~~ 68 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVKR 68 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665544
No 227
>3ku3_B Hemagglutinin HA2 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku5_B* 3ku6_B* 3qqb_B* 3qqe_B* 3qqo_B* 3s11_B* 3s12_B* 3s13_B* 1jsm_B* 1jsn_B* 1jso_B* 2fk0_B* 3fku_B* 4fqi_B* 3gbm_B* 2ibx_B* 1rd8_B* 3gbn_B* 3lzf_B* 3r2x_B* ...
Probab=21.43 E-value=68 Score=27.61 Aligned_cols=57 Identities=11% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEE 175 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~-------~tKkhLsqRId~vD~klde~~ei~~~iq~e 175 (277)
|-+.+++-.+|...|+..+-.|.+... ..=.++.+||.+++.++|++..-+=.-.-|
T Consensus 34 ~AAD~kSTQ~AId~It~KvN~iiekmn~qf~~v~~ef~~~e~ri~~l~~kvdD~~~DvwsYnAE 97 (174)
T 3ku3_B 34 YAADKESTQKAFDGITNKVNSVIEKMNTQFEAVGKEFSNLERRLENLNKKMEDGFLDVWTYNAE 97 (174)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHTSSCCCCCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH
Confidence 456788999999999998888776543 223467889999999998875433333333
No 228
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=21.34 E-value=2.6e+02 Score=20.96 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHH
Q 023768 183 SKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 183 v~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.+.|..-++.|+..+..|-.|+.
T Consensus 61 ~e~i~~k~~eL~~~~~~i~~k~y 83 (113)
T 3lof_A 61 KDEFEHKRKELEQVCNPIISGLY 83 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666654
No 229
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.27 E-value=2.8e+02 Score=21.24 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=28.3
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 167 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~klde~~e 167 (277)
.+|.++++++...|=+|..-|+.-..|.++..+
T Consensus 33 ~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~ 65 (91)
T 2pjw_V 33 SKLQNLAQRVFASKARLNYALNDKAQKYNTLIE 65 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999988888877433
No 230
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=21.20 E-value=71 Score=30.87 Aligned_cols=45 Identities=18% Similarity=0.381 Sum_probs=19.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHH
Q 023768 132 SVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEV 176 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsq---RId~vD~klde~~ei~~~iq~eV 176 (277)
+++..|..|..+|..|+++|.+ .++.+..|+++...-+..|.+|+
T Consensus 346 DIsteL~~vn~~L~~A~~~l~~Sn~iL~svn~Ki~~~~~~~~~~~~~~ 393 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEI 393 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------
T ss_pred chhhhHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677788888888888877753 45555555555433333333333
No 231
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=21.13 E-value=3.7e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.420 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHhhhhH
Q 023768 184 KLIGDEFQSVRDIVQTLESKLIEIEGKQD 212 (277)
Q Consensus 184 ~~i~~dv~~v~~~V~~Le~Ki~~ie~kQd 212 (277)
.++..-++.|-..+..+=.+++.+|+.+.
T Consensus 64 ~qL~~nFgAISssi~dIy~rLd~leAdaQ 92 (149)
T 1wyy_A 64 KQLSSNFGAISSVLNDILSRLDKVEAEVQ 92 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666667777777776543
No 232
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.09 E-value=3.4e+02 Score=27.12 Aligned_cols=18 Identities=6% Similarity=0.047 Sum_probs=9.0
Q ss_pred HHHHHHHhcCCCceE-EEe
Q 023768 66 SSVQQELSHVPRSVI-IET 83 (277)
Q Consensus 66 ~~L~~El~~Lsr~iT-vvn 83 (277)
+.+.++++....|+. |+|
T Consensus 220 ~~l~~~l~~~~~~iiiVlN 238 (695)
T 2j69_A 220 RYLENYIKGRGLTVFFLVN 238 (695)
T ss_dssp HHHHHHTTTSCCCEEEEEE
T ss_pred HHHHHHHHhhCCCEEEEEE
Confidence 345555665544444 444
No 233
>3m5g_B Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} PDB: 3m5h_B* 3m5i_B* 3m5j_B* 4dj6_B* 4dj7_B* 4dj8_B* 4fqv_B 1ti8_B*
Probab=21.02 E-value=39 Score=29.30 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=42.9
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 179 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~s-------L~~tKkhLsqRId~vD~klde~~ei~~~iq~eV~~i 179 (277)
|=+.+++-.+|...|+..+-.|.+. |...=.++.+||.+|+.|+|++..=+=.-.-|+-.+
T Consensus 34 ~AAD~kSTQ~AId~IT~KvN~iIeKmN~qf~~i~~Ef~eve~ri~~l~~kvdD~~~DiWsYnaELLVl 101 (182)
T 3m5g_B 34 TAADYKSTQSAIDQITGKLNRLIGKTNQQFELIDNEFNEIEQQIGNVINWTRDAMTEIWSYNAELLVA 101 (182)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHSSCCCEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence 4577899999999999988877653 334445778999999999998754443334444333
No 234
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=20.88 E-value=26 Score=32.02 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=11.3
Q ss_pred eeeEccCccceeec
Q 023768 9 TFLVGAGILTSVLA 22 (277)
Q Consensus 9 ~iLvGAG~~GSvl~ 22 (277)
+|+||||++|-..+
T Consensus 13 VvIIGaGisGLsaA 26 (513)
T 4gde_A 13 VLVIGAGPTGLGAA 26 (513)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECCcHHHHHHH
Confidence 78999999986543
No 235
>2fyz_B Fusion protein, fusion glycoprotein F0; mumps virus fusion protein core, protein binding; 2.20A {Mumps virus} SCOP: h.3.2.1
Probab=20.88 E-value=89 Score=21.62 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q 023768 132 SVARQLEDVYSSISAAQRQLSSK 154 (277)
Q Consensus 132 sv~kqLeqVs~sL~~tKkhLsqR 154 (277)
+++.+|.++..+|+.++.||.+=
T Consensus 11 DISseL~~iNnsL~~A~~~I~eS 33 (48)
T 2fyz_B 11 DISTELSKVNASLQNTVKYIKES 33 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888887653
No 236
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=20.82 E-value=3.7e+02 Score=22.39 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhhh
Q 023768 119 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 158 (277)
Q Consensus 119 M~VTkr~m~~Av~sv~kqLeqVs~sL~~tKkhLsqRId~v 158 (277)
|-.-|.-|+.-+..+=...+.+.+-|.+.|+...+|=-+-
T Consensus 12 ~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP 51 (141)
T 3okq_A 12 MEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQP 51 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCC
Confidence 4566788888889998999999999999988887774333
No 237
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=20.61 E-value=2.4e+02 Score=28.02 Aligned_cols=98 Identities=10% Similarity=0.239 Sum_probs=57.0
Q ss_pred eeEEecccCC-CchHHHhhhhHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHhHhhhh------hhHHHHHHHHHHHHH-H
Q 023768 106 GYVWWKGWKL-PDMMFATRRSLSDACNSVARQLE-DV-YSSISAAQRQLSSKITSVD------RDVNKIVEISQATQE-E 175 (277)
Q Consensus 106 gYmwWKG~s~-SDlM~VTkr~m~~Av~sv~kqLe-qV-s~sL~~tKkhLsqRId~vD------~klde~~ei~~~iq~-e 175 (277)
.--|||...| +.+=|+=.|-+..-.-.++---| |. ..++.-|| ...=+-.+| .++||+.-.++.|++ |
T Consensus 253 l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK--~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD 330 (554)
T 3g4d_A 253 ICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTK--VIAMASIVDDTYDSYATYEELIPYTNAIERWD 330 (554)
T ss_dssp HHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHH--HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHhcC
Confidence 3469999998 45666655666554444443323 21 12232222 222233333 368888888888887 5
Q ss_pred HHHhhhchhhhhhHHHHHHHHHHhHHHHHH
Q 023768 176 VTILRGRSKLIGDEFQSVRDIVQTLESKLI 205 (277)
Q Consensus 176 V~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~ 205 (277)
.+.+..==+.++.=...+-..++.+|.++.
T Consensus 331 ~~~~~~LPeymK~~f~al~~~~~e~~~~~~ 360 (554)
T 3g4d_A 331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVA 360 (554)
T ss_dssp GGGGGGSCGGGHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555543334555566777778888887765
No 238
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.52 E-value=2.9e+02 Score=21.07 Aligned_cols=60 Identities=7% Similarity=0.035 Sum_probs=33.4
Q ss_pred HhhhhHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHHHHHhhhchhhhhhHHHHHH
Q 023768 135 RQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 194 (277)
Q Consensus 135 kqLeqVs~sL~~tKkhLsqRId~vD~--klde~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~ 194 (277)
.-++.--.-....-..|+++|..+-. .-++-+..+..++..+.++.+=+.++.-++.++.
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333333333444444555554421 1245556677777788777777777776666654
No 239
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=20.51 E-value=1.6e+02 Score=23.59 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 163 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 163 de~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
|+-..++...+.+|..++..++.| ...=+..|..|++++..+++
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 240
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.48 E-value=1.4e+02 Score=28.35 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=7.6
Q ss_pred HHHHHHhHhhhhhhHHHH
Q 023768 148 QRQLSSKITSVDRDVNKI 165 (277)
Q Consensus 148 KkhLsqRId~vD~klde~ 165 (277)
-++|.+|++.++.+..++
T Consensus 12 l~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 241
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=20.30 E-value=35 Score=27.29 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.8
Q ss_pred HhHHHHHHHHHHH
Q 023768 214 TTLGVKKLCDRAR 226 (277)
Q Consensus 214 tn~GV~~Lc~~~~ 226 (277)
||+||.||.+|.+
T Consensus 69 TnEGieyLR~yLh 81 (105)
T 3u5c_K 69 TEEGVEYLREYLN 81 (105)
T ss_dssp CHHHHHHHHHHTC
T ss_pred chhhHHHHHHHhC
Confidence 8999999999983
No 242
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=20.22 E-value=2.4e+02 Score=22.53 Aligned_cols=14 Identities=7% Similarity=0.285 Sum_probs=5.5
Q ss_pred HHHHHHHhHHHHHH
Q 023768 192 SVRDIVQTLESKLI 205 (277)
Q Consensus 192 ~v~~~V~~Le~Ki~ 205 (277)
.++.....|+.++.
T Consensus 113 ~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 113 DTEKNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 243
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=20.22 E-value=54 Score=24.90 Aligned_cols=24 Identities=17% Similarity=0.363 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHhh
Q 023768 186 IGDEFQSVRDIVQTLESKLIEIEG 209 (277)
Q Consensus 186 i~~dv~~v~~~V~~Le~Ki~~ie~ 209 (277)
.|.+|+.++..|..|+.|+..+|.
T Consensus 13 VREEVevLKe~I~EL~e~~~qLE~ 36 (78)
T 1dip_A 13 VREEVEILKEQIRELVEKNSQLER 36 (78)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999998775
No 244
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=20.10 E-value=3.6e+02 Score=22.09 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhHHHH---HHHHHHhHHHHHH
Q 023768 163 NKIVEISQATQEEVTILRGRSKLIGDEFQS---VRDIVQTLESKLI 205 (277)
Q Consensus 163 de~~ei~~~iq~eV~~i~~dv~~i~~dv~~---v~~~V~~Le~Ki~ 205 (277)
.+.++++.++.+++.++..++..|-.|+.. +....+.+..||.
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKII 50 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKIV 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHHH
Confidence 334444555555555555555555555544 2233344444544
No 245
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=20.07 E-value=2.8e+02 Score=23.47 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhhh
Q 023768 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 211 (277)
Q Consensus 164 e~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~kQ 211 (277)
+..+....||+++..+..++..=.....--...|..||..|++++.+-
T Consensus 50 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 50 DIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHHhhC
Confidence 455667778888888877776521110011255666666666655543
No 246
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=20.06 E-value=2.8e+02 Score=23.43 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhhhchhhhhhHHHHHHHHHHhHHHHHHHHhhh
Q 023768 164 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 210 (277)
Q Consensus 164 e~~ei~~~iq~eV~~i~~dv~~i~~dv~~v~~~V~~Le~Ki~~ie~k 210 (277)
+..+....||+++..+..++..=..+..--...|..||..+++++.+
T Consensus 49 ~~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~~~v~~LE~~id~~~~~ 95 (177)
T 1woz_A 49 DMKKDLERVQVELFEIGEDLSTQSSKKKIDEKYVKWLEERTVEYRKE 95 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCHHHHHHHHHHHHHHHhh
Confidence 45666777888888887777652111000124555666666655543
Done!