BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023772
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 160 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 218 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 274
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 275 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 304
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 279
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 334
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 162 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 219
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 220 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 276
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 277 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 306
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 223 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 281
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 336
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 263
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 263
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 144 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 201
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 202 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 258
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 259 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 288
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 205 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 263
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 155 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 212
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 213 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 269
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 270 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 299
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 216 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 274
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 329
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 138 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 252
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 257
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 138 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 195
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 196 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 252
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 253 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 282
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 199 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 257
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 139 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 196
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 197 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 253
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 254 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 283
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 200 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 258
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 134 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 191
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 192 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 248
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 249 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 278
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 195 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 253
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 308
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 143 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 200
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 201 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 257
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 258 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 287
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 204 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 262
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 137 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 194
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 195 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 251
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 252 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 281
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 198 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 256
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 141 TGMC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 260
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 260
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
D ++ W++ T +++K +GH V + + +++ SA +
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 147 bits (372), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 260
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
D ++ W++ T +++K +GH V + + +++ SA +
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 142/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + + D+ I++W + G KT H + DV ++D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 141 TGKC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+TL+L D S G+ L+ Y GH + + C N +
Sbjct: 199 SFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 256 VSGSEDNLVYIWNLQTKEIVQKLQGHTDVV 285
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D T++LW+ +G +KTY H E + VT ++S
Sbjct: 202 KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 260
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 141/270 (52%), Gaps = 14/270 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH AV + +F+ +G + S D+ I++W + G KT H + DV ++D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ L+S D+ + WDVS+G+ ++ +GH + V FN S+++VS +D+S+R WD +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVG---RELSDDLGQPV 187
+ ++ + + D V +V + + I+ S DG R +D G + L DD PV
Sbjct: 141 TGMC--LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 198
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN----SDAHV 243
+ + S +G ILA+ LD+ L+L D S G+ L+ Y GH + + C N +
Sbjct: 199 SFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY---CIFANFSVTGGKWI 255
Query: 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
GSED +Y W+L +V K + H+ VV
Sbjct: 256 VSGSEDNMVYIWNLQTKEIVQKLQGHTDVV 285
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGG 80
+F+ +G Y L+ D ++LW+ +G +KTY H E + VT ++S
Sbjct: 202 KFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG-GKWIVSGSE 260
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY--DQSLRAW--DC 131
D ++ W++ T +++K +GH V + + +++ SA D++++ W DC
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSDC 315
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 113/244 (46%), Gaps = 9/244 (3%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L GH G V +++ N +S DRT+++WN G I T H VR +H+
Sbjct: 155 LVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEK 210
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133
+++S D + WD+ TG+ + GH + V V+++ VVS YD ++ WD +
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPET 268
Query: 134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMS 193
+ + + + V S+ ++ GS+D ++R +D+ G + G M
Sbjct: 269 ETC--LHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 326
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY 253
N +++ DST+++ D TG+ LQ +G K CL + V S+DG +
Sbjct: 327 LKDNILVSGNADSTVKIWDIKTGQCLQTLQGP-NKHQSAVTCLQFNKNFVITSSDDGTVK 385
Query: 254 FWDL 257
WDL
Sbjct: 386 LWDL 389
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 88/198 (44%), Gaps = 8/198 (4%)
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
++++S D + W TG+ +R GH V + + + ++++S D++L+ W+
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWN-- 185
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISM 192
+ + E I + +V + L + ++ GS D T+R +DI G+ L +G +
Sbjct: 186 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 245
Query: 193 SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252
DG +++ D +++ D T L +GH + + L HV GS D I
Sbjct: 246 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS----LQFDGIHVVSGSLDTSI 301
Query: 253 YFWDLVDASVVAKFKAHS 270
WD+ + + H
Sbjct: 302 RVWDVETGNCIHTLTGHQ 319
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 159 IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218
I+ GS D T++ + G+ L +G S N I++ D TL++ + TGE
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGEC 191
Query: 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
+ GH T C+ + V GS D + WD+ + H V+
Sbjct: 192 IHTLYGHT----STVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 243
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
+ L GH+ L + N +S D T+++W+ G ++T + + V
Sbjct: 313 HTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 370
Query: 72 NSK-LISCGGDRQIFYWDVSTGRVIRKFRGHES 103
N +I+ D + WD+ TG IR ES
Sbjct: 371 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES 403
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 112/248 (45%), Gaps = 13/248 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH +V F+ DG S D+T++LWN G ++T H VR V + D
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 233
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ S D+ + W+ G++++ GH S VN V F + SA D++++ W+
Sbjct: 234 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-- 290
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDDLGQ--PVN 188
+ + +Q + SV V + I S D TV+ ++ R G+ L G V
Sbjct: 291 -RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVW 348
Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
++ S DG I ++ D T++L +R+ G+LLQ GH S + + S+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVRGVAFSPDGQTIASASD 405
Query: 249 DGYIYFWD 256
D + W+
Sbjct: 406 DKTVKLWN 413
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 113/248 (45%), Gaps = 13/248 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH +V F+ DG S D+T++LWN G H++T H V V + D
Sbjct: 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ S D+ + W+ G++++ GH S V V F+ + SA D++++ W+
Sbjct: 357 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-- 413
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLGQ--PVN 188
+ + +Q + SV V + + I S D TV+ ++ R G+ L G V
Sbjct: 414 -RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 471
Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
++ S DG I ++ D T++L +R+ G+LLQ GH S + + S+
Sbjct: 472 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVRGVAFSPDGQTIASASD 528
Query: 249 DGYIYFWD 256
D + W+
Sbjct: 529 DKTVKLWN 536
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 111/248 (44%), Gaps = 13/248 (5%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L GH +V F+ DG S D+T++LWN G ++T H VR V + D
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDG 397
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+ S D+ + W+ G++++ GH S V V F+ + SA D++++ W+
Sbjct: 398 QTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-- 454
Query: 133 SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDDLGQP--VN 188
+ + +Q + SV V + I S D TV+ ++ R G+ L G V
Sbjct: 455 -RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 189 CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248
++ S DG I ++ D T++L +R+ G+LLQ GH + + + S
Sbjct: 513 GVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG--VAFSPDGQTIASASS 569
Query: 249 DGYIYFWD 256
D + W+
Sbjct: 570 DKTVKLWN 577
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 113/251 (45%), Gaps = 13/251 (5%)
Query: 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
E N L+ H +V F+ DG S D+T++LWN G ++T H V V +
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 66
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D + S D+ + W+ G++++ GH S V V F+ + SA D++++ W
Sbjct: 67 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 125
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDDLGQ-- 185
+ + + +Q + SV V + I S D TV+ ++ R G+ L G
Sbjct: 126 N---RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS 181
Query: 186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245
V ++ S DG I ++ D T++L +R+ G+LLQ GH S + +
Sbjct: 182 SVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVRGVAFSPDGQTIAS 238
Query: 246 GSEDGYIYFWD 256
S+D + W+
Sbjct: 239 ASDDKTVKLWN 249
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 28/274 (10%)
Query: 5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
D RT LKGH +V F+ G SC D TI+LW+ I+T H V
Sbjct: 141 DFERT----LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS 196
Query: 65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
V + + ++S D+ I W+V TG ++ F GH V V+ N+ +++ S DQ
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 125 SLRAW-----DCRSHSTEPIQII-------DSFQDSVMSVCLTKTE--------IIGGSV 164
++R W +C++ E ++ +S S+ ++T+ ++ GS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 165 DGTVRTFDIRVGRELSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY 222
D T++ +D+ G L +G V + + G IL+ D TLR+ D ++
Sbjct: 317 DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Query: 223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
H + F T + +V GS D + W+
Sbjct: 377 NAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 118/303 (38%), Gaps = 43/303 (14%)
Query: 6 LPRT-EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR 64
+PR E L GH V F+ + +S +D TI++W+ G +T K H V+
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 65 DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
D+ L SC D I WD IR GH+ V++V +VSA D+
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 125 SLRAWDCR--------SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG 176
+++ W+ + + E ++++ QD + I S D TVR + +
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL--------IASCSNDQTVRVW-VVAT 265
Query: 177 RELSDDLGQP---VNCISMSND--------------------GNCILASCLDSTLRLLDR 213
+E +L + V CIS + + G +L+ D T+++ D
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV 325
Query: 214 STGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
STG L GH ++ + + ++D + WD + + AH V
Sbjct: 326 STGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 383
Query: 274 KLL 276
L
Sbjct: 384 TSL 386
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%)
Query: 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89
G + LS +D+TI++W+ G+ + T H VR V + ++SC D+ + WD
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367
Query: 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
R ++ HE V ++ F++ + VV+ DQ+++ W+CR
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 32/189 (16%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDV----- 66
GH V R N DG SC D+T+R+W + K K+ RE R V
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV----VATKECKAELREHRHVVECIS 283
Query: 67 -----------HVTADNSK--------LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNA 107
T +K L+S D+ I WDVSTG + GH++ V
Sbjct: 284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 343
Query: 108 VKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVD 165
V F+ ++S D++LR WD ++ ++ +++ + V S+ KT ++ GSVD
Sbjct: 344 VLFHSGGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 166 GTVRTFDIR 174
TV+ ++ R
Sbjct: 402 QTVKVWECR 410
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
V++ H AV A F+ DG SCG D+T++++ G + K+H EV ++D+
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAWD 130
S + +C D+++ WD +TG+++ + H +VN F S+ ++ + D L+ WD
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 131 -----CRS----HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--- 178
CR+ H+ S D +++ C S DGT+R +D+R E
Sbjct: 730 LNQKECRNTMFGHTNSVNHCRFSPDDELLASC---------SADGTLRLWDVRSANERKS 780
Query: 179 ------------LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH 225
+D+ V C S S DG+ I+ + + L ++G L + + GH
Sbjct: 781 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 839
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 39/298 (13%)
Query: 1 MSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIK 54
+ + DL + E N + GH +V RF+ D SC D T+RLW N + I++K
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 784
Query: 55 T-YKSHGREVRDVHV-------TADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106
+ S DV V +AD K+I ++ + + ++G + GH S +
Sbjct: 785 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844
Query: 107 AVKFNEYSSVVVSA---------GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157
F+ Y + V A D L+ DCR H S+ VM +
Sbjct: 845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--------SWVHGVM-FSPDGS 895
Query: 158 EIIGGSVDGTVRTFDI-RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216
+ S D T+R ++ +V + + L Q ++ + N+ +LA L+L+ TG
Sbjct: 896 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGLQLIAGKTG 954
Query: 217 ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
++ ++ ++ + CCL+ +V G EDG I +L + V + H V+
Sbjct: 955 QI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1007
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL 75
GH+ AV +F DG +S +D I++WN G ++ ++H V+D + D S+L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SRL 1058
Query: 76 ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
+S D + W+V TGR+ R F H+ V + + ++ S D++ + W
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 117/294 (39%), Gaps = 55/294 (18%)
Query: 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIK-----------TYKS 58
+GH V F+ DG+ L+ D+TIR+W + I +K T
Sbjct: 879 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 59 HGREVRDVHVTADNSKLI--------SC-------------GGDRQIFYWDVSTGRVIRK 97
+R + + A + I SC D I ++ RV
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 998
Query: 98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-CLTK 156
GH+ V ++F ++S+ D ++ W+ + T + + Q++V L
Sbjct: 999 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---TGDYVFLQAHQETVKDFRLLQD 1055
Query: 157 TEIIGGSVDGTVRTFDI---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213
+ ++ S DGTV+ +++ R+ R+ + G ++C ++S+D ++ D T ++
Sbjct: 1056 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKFSSTSADKTAKIWSF 1114
Query: 214 STGELLQEYKGH----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263
L E KGH C +F D L + G ++G I W++ D ++
Sbjct: 1115 DLLSPLHELKGHNGCVRCSAFSLDGIL------LATGDDNGEIRIWNVSDGQLL 1162
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L+ H+ V R D LS D T+++WN G + + H V +++D +
Sbjct: 1040 LQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1098
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCR 132
K S D+ W + + +GH V F+ ++++ G D +R W+
Sbjct: 1099 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1157
Query: 133 S----HSTEPIQIIDSFQDS---VMSVCLTKTEIIGGSVDGTVRTFDIRVG 176
HS PI + + V VC + S G ++ +++ G
Sbjct: 1158 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG 1208
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH----ICKSFKTDCCLTNSDAHVTGGS 247
S DG I + D TL++ TGE L + K H +C +F +D D+++ S
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------DSYIATCS 676
Query: 248 EDGYIYFWDLVDASVVAKFKAHS 270
D + WD +V + HS
Sbjct: 677 ADKKVKIWDSATGKLVHTYDEHS 699
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 109/239 (45%), Gaps = 35/239 (14%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
V++ H AV A F+ DG SCG D+T++++ G + K+H EV ++D+
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAWD 130
S + +C D+++ WD +TG+++ + H +VN F S+ ++ + D L+ WD
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 131 -----CRS----HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--- 178
CR+ H+ S D +++ C S DGT+R +D+R E
Sbjct: 737 LNQKECRNTMFGHTNSVNHCRFSPDDELLASC---------SADGTLRLWDVRSANERKS 787
Query: 179 ------------LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH 225
+D+ V C S S DG+ I+ + + L ++G L + + GH
Sbjct: 788 INVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGH 846
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 125/298 (41%), Gaps = 39/298 (13%)
Query: 1 MSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIK 54
+ + DL + E N + GH +V RF+ D SC D T+RLW N + I++K
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVK 791
Query: 55 T-YKSHGREVRDVHV-------TADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106
+ S DV V +AD K+I ++ + + ++G + GH S +
Sbjct: 792 RFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 851
Query: 107 AVKFNEYSSVVVSA---------GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157
F+ Y + V A D L+ DCR H S+ VM +
Sbjct: 852 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--------SWVHGVM-FSPDGS 902
Query: 158 EIIGGSVDGTVRTFDI-RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216
+ S D T+R ++ +V + + L Q ++ + N+ +LA L+L+ TG
Sbjct: 903 SFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE-TMVLAVDNIRGLQLIAGKTG 961
Query: 217 ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274
++ ++ ++ + CCL+ +V G EDG I +L + V + H V+
Sbjct: 962 QI-----DYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVR 1014
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL 75
GH+ AV +F DG +S +D I++WN G ++ ++H V+D + D S+L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQD-SRL 1065
Query: 76 ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
+S D + W+V TGR+ R F H+ V + + ++ S D++ + W
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/294 (21%), Positives = 117/294 (39%), Gaps = 55/294 (18%)
Query: 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIK-----------TYKS 58
+GH V F+ DG+ L+ D+TIR+W + I +K T
Sbjct: 886 RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 59 HGREVRDVHVTADNSKLI--------SC-------------GGDRQIFYWDVSTGRVIRK 97
+R + + A + I SC D I ++ RV
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSS 1005
Query: 98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-CLTK 156
GH+ V ++F ++S+ D ++ W+ + T + + Q++V L
Sbjct: 1006 GVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ---TGDYVFLQAHQETVKDFRLLQD 1062
Query: 157 TEIIGGSVDGTVRTFDI---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213
+ ++ S DGTV+ +++ R+ R+ + G ++C ++S+D ++ D T ++
Sbjct: 1063 SRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSC-AISSDATKFSSTSADKTAKIWSF 1121
Query: 214 STGELLQEYKGH----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263
L E KGH C +F D L + G ++G I W++ D ++
Sbjct: 1122 DLLSPLHELKGHNGCVRCSAFSLDGIL------LATGDDNGEIRIWNVSDGQLL 1169
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 67/171 (39%), Gaps = 10/171 (5%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L+ H+ V R D LS D T+++WN G + + H V +++D +
Sbjct: 1047 LQAHQETVKDFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDAT 1105
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCR 132
K S D+ W + + +GH V F+ ++++ G D +R W+
Sbjct: 1106 KFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1164
Query: 133 S----HSTEPIQIIDSFQDS---VMSVCLTKTEIIGGSVDGTVRTFDIRVG 176
HS PI + + V VC + S G ++ +++ G
Sbjct: 1165 DGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATG 1215
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH----ICKSFKTDCCLTNSDAHVTGGS 247
S DG I + D TL++ TGE L + K H +C +F +D D+++ S
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD------DSYIATCS 683
Query: 248 EDGYIYFWDLVDASVVAKFKAHS 270
D + WD +V + HS
Sbjct: 684 ADKKVKIWDSATGKLVHTYDEHS 706
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S+++S D++++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V++ + + +S +D+TI++W +G + T H V V V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 224 NL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 279
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRL 210
+P ++ S DG + A D+ +R+
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH D + + + GS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISGSRDK 129
Query: 251 YIYFWDL 257
I W +
Sbjct: 130 TIKVWTI 136
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 23 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 73
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S+++S D++++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V++ + + +S +D+TI++W +G + T H V V V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 224 NL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 279
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRL 210
+P ++ S DG + A D+ +R+
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH D + + + GS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISGSRDK 129
Query: 251 YIYFWDL 257
I W +
Sbjct: 130 TIKVWTI 136
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 23 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 73
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S+++S D++++
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 127 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V++ + + +S +D+TI++W +G + T H V V V
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 157
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 158 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 218 NL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 273
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRL 210
+P ++ S DG + A D+ +R+
Sbjct: 274 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 306
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH D + + + GS D
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISGSRDK 123
Query: 251 YIYFWDL 257
I W +
Sbjct: 124 TIKVWTI 130
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 17 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 67
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S+++S D++++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V++ + + +S +D+TI++W +G + T H V V V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 224 NL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 279
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRL 210
+P ++ S DG + A D+ +R+
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH D + + + GS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISGSRDK 129
Query: 251 YIYFWDL 257
I W +
Sbjct: 130 TIKVWTI 136
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 23 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 73
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 106/212 (50%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S+++S D++++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V++ + + +S +D+TI++W +G + T H V V V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 224 NL---AAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 279
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRL 210
+P ++ S DG + A D+ +R+
Sbjct: 280 GYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRV 312
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH D + + + GS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISGSRDK 129
Query: 251 YIYFWDL 257
I W +
Sbjct: 130 TIKVWTI 136
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 23 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 73
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 105/212 (49%), Gaps = 13/212 (6%)
Query: 14 LKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIKTYKSHGREVRDVH 67
L+GH G V + A G N LS +D+T+ W + G+ ++++K H V+D
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+TAD + +S D+ + WDV+TG ++F GH+S+V +V ++ +S ++S D++++
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 128 AWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVGRELSDD 182
W + + + + V V K + II D V+ +++ + +D
Sbjct: 133 VWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 183 LGQ--PVNCISMSNDGNCILASCLDSTLRLLD 212
+G +N ++ S DG I ++ D + L +
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 23/219 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----- 70
GH+ V + + + +S +D+TI++W +G + T H V V V
Sbjct: 105 GHKSDVXSVDIDKKASXIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVPNEKAD 163
Query: 71 -DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ +IS G D+ + W+++ ++ F GH S +N + + +++ SAG D + W
Sbjct: 164 DDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT-VRTFDIRVGRELSDDL----- 183
+ + + S QD V S+ + + T ++ F + + L DDL
Sbjct: 224 NL---AAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLD-PQYLVDDLRPEFA 279
Query: 184 -----GQP-VNCISMSNDGNCILASCLDSTLRLLDRSTG 216
+P ++ S DG + A D+ +R+ T
Sbjct: 280 GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250
+++ DG L++ D TLRL D +TGE Q + GH KS + + + GS D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH--KSDVXSVDIDKKASXIISGSRDK 129
Query: 251 YIYFWDL 257
I W +
Sbjct: 130 TIKVWTI 136
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 179 LSDDLGQPVNCISMSNDGNCILASCLDSTLRLL--DRSTGELLQEYKGHICKSFKTDCCL 236
L+ GQP +S S D I + +L D+ G ++ +KGH DC L
Sbjct: 23 LATSAGQPNLLLSASRDKTLI-------SWKLTGDDQKFGVPVRSFKGH--SHIVQDCTL 73
Query: 237 TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
T A+ S D + WD+ +F H
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 119/261 (45%), Gaps = 28/261 (10%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
+L GH G+VL ++ D ++ D T+R+W+ + G + T H V +H+ +N
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 73 SKLISCGGDRQIFYWDVSTGRVI---RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
+++C DR I WD+++ I R GH + VN V F++ +VSA D++++ W
Sbjct: 224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 281
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG--QPV 187
+ + + E ++ ++ + + + ++ GS D T+R +DI G L G + V
Sbjct: 282 N--TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC---------KSFKTDCCLTN 238
CI N I++ D +++ D + G +C + F+ L
Sbjct: 340 RCIRFDNKR--IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR----LQF 393
Query: 239 SDAHVTGGSEDGYIYFWDLVD 259
+ + S D I WD ++
Sbjct: 394 DEFQIVSSSHDDTILIWDFLN 414
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 9/164 (5%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHIKTYKSHGREVRDVHVT 69
N L H AVL RFN ++C KDR+I +W+ I ++ R +V V
Sbjct: 207 NTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV-VD 263
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D+ ++S GDR I W+ ST +R GH+ + +++ + +VVS D ++R W
Sbjct: 264 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLW 321
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDI 173
D + +++++ ++ V + I+ G+ DG ++ +D+
Sbjct: 322 DIECGAC--LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 363
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 113/257 (43%), Gaps = 18/257 (7%)
Query: 30 GNYCL--------SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD 81
G YCL S +D TI++W+ + + H V + + D +I+ D
Sbjct: 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSD 192
Query: 82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-Q 140
+ WDV+TG ++ H V ++FN + ++V+ D+S+ WD S + + +
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 141 IIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCIL 200
++ + +V V I+ S D T++ ++ + G + ++
Sbjct: 251 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV 310
Query: 201 ASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA 260
+ D+T+RL D G L+ +GH + C+ + + G+ DG I WDLV A
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRIVSGAYDGKIKVWDLV-A 365
Query: 261 SVVAKFKAHSLVVKLLL 277
++ + A +L ++ L+
Sbjct: 366 ALDPRAPAGTLCLRTLV 382
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 129 WDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFD---IRVGRELSDDLGQ 185
W C HS + I V + +I+ G D T++ +D + R L+ G
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GH 172
Query: 186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245
+ + + D I+ DST+R+ D +TGE+L H C++ L ++ +
Sbjct: 173 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH-CEAVLH---LRFNNGMMVT 228
Query: 246 GSEDGYIYFWDLVDAS 261
S+D I WD+ +
Sbjct: 229 CSKDRSIAVWDMASPT 244
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 99/225 (44%), Gaps = 17/225 (7%)
Query: 14 LKGHEGAVLA---ARFNGDGNYCLSCGKDRTIRLWNPHR---------GIHIKTYKSHGR 61
L GH G V + + +S +D+T+ W P+ G+ + + H
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 62 EVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
V DV ++ + + +S D + W++ G+ KF GH +V +V F+ + +VS G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 122 YDQSLRAWDCRS---HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE 178
D +LR W+ + H+ D S L I+ G D V+ +D+ GR
Sbjct: 129 RDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL 188
Query: 179 LSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE 221
++D G V +++S DG+ +S D RL D + GE L E
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSE 233
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L+GH V + +GN+ +S D ++RLWN G + H ++V V + DN
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEY--SSVVVSAGYDQSLRAWD 130
+++S G D + W+V + RG H V+ V+F+ + V+VS G+D ++ WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 131 CRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV--DGTVRTFDIRVGRELSD-DLGQPV 187
+ + + + V SV ++ + S DG R +D+ G LS+ G P+
Sbjct: 183 LATGRL--VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPI 240
Query: 188 NCISMSNDGNCILASCLDSTLRLLDRSTG----ELLQEYKG 224
N I S + + A+ + +R+ D EL E++G
Sbjct: 241 NQICFSPNRYWMCAAT-EKGIRIFDLENKDIIVELAPEHQG 280
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 26/222 (11%)
Query: 73 SKLISCGGDRQIFYW---------DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
+K++S D+ + W + S G R+ GH + V+ V + + VSA +D
Sbjct: 29 TKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWD 88
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIR------V 175
SLR W+ ++ + + + +D V+SV + +I+ G D +R ++++ +
Sbjct: 89 HSLRLWNLQNGQCQ-YKFLGHTKD-VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL 146
Query: 176 GRELSDDLGQPVNCI--SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD 233
R D V+C+ S S D I++ D+ +++ D +TG L+ + KGH ++ T
Sbjct: 147 SRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHT--NYVTS 201
Query: 234 CCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275
++ + +DG WDL +++ A + + ++
Sbjct: 202 VTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQI 243
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 155 TKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQP----------VNCISMSNDGNCILASC 203
T T+++ S D T+ ++ R S+ G P V+ +++SN+GN +++
Sbjct: 27 TATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSAS 86
Query: 204 LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257
D +LRL + G+ ++ GH + + + G D + W++
Sbjct: 87 WDHSLRLWNLQNGQCQYKFLGHTKDVLSV--AFSPDNRQIVSGGRDNALRVWNV 138
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS--HSTE-----PIQIIDSFQDSVMS 151
RG + + + E ++ VVS D++L +W HS+E P + ++ V
Sbjct: 13 RGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSD 72
Query: 152 VCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDST 207
V L+ + S D ++R ++++ G+ LG + V ++ S D I++ D+
Sbjct: 73 VALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNA 132
Query: 208 LRLLDRSTGELLQEYKGHICKSFKTD--CCLTNS---DAHV-TGGSEDGYIYFWDLVDAS 261
LR+ + GE + + + TD C+ S DA V G D + WDL
Sbjct: 133 LRVWN-VKGECMHT----LSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGR 187
Query: 262 VVAKFKAHS 270
+V K H+
Sbjct: 188 LVTDLKGHT 196
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 90/200 (45%), Gaps = 6/200 (3%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR--DVHVTADNSK 74
H + A F L+ D T LW+ G ++++ HG +V D+ + +
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134
+S G D++ WD+ +G+ ++ F HES+VN+V++ S D + R +D R+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 135 STEPIQIIDS--FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQP--VNCI 190
I +S F S + L+ + G D T+ +D+ G +S G V+ +
Sbjct: 273 REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTL 332
Query: 191 SMSNDGNCILASCLDSTLRL 210
+S DG + D TLR+
Sbjct: 333 RVSPDGTAFCSGSWDHTLRV 352
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
Query: 46 NPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEV 105
N + K+ H + T + ++++ GD WDV +G++++ F GH ++V
Sbjct: 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199
Query: 106 NAVKF--NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIG 161
+ +E + VS G D+ WD R S + +Q ++ + V SV +
Sbjct: 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMR--SGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 162 GSVDGTVRTFDIRVGRELS----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE 217
GS D T R +D+R RE++ + + + + S G + A D T+ + D G
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Query: 218 LLQEYKGH 225
+ GH
Sbjct: 318 RVSILFGH 325
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHIKTYKSHGREVRDVHVT 69
+ HE V + R+ G+ S D T RL++ R + I + +S V +
Sbjct: 234 QAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L + D I WDV G + GHE+ V+ ++ + + S +D +LR W
Sbjct: 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 12/229 (5%)
Query: 54 KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY 113
+T K HG +V + D +++S D ++ WD T + V A +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 114 SSVVVSAGYDQSLRAWDCRSHSTEPIQIID---SFQDSVMSVCL---TKTEIIGGSVDGT 167
+ G D + E + + + +S C + +I+ S DGT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 168 VRTFDIRVGRELSD--DLGQPVNCISM--SNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
+D+ G+ L G V C+ + S GN ++ D + D +G+ +Q ++
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE 237
Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLV 272
H +S S GS+D +DL VA + S++
Sbjct: 238 TH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII 284
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW 45
L + ++L GHE V R + DG S D T+R+W
Sbjct: 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/295 (22%), Positives = 120/295 (40%), Gaps = 48/295 (16%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------------------IHIKTYKS 58
H V +F+ DG Y L+ G ++T +++ G ++ + S
Sbjct: 63 HTSVVCCVKFSNDGEY-LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV 118
+R V + D L + DR I WD+ +++ +GHE ++ ++ + +V
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 119 SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGGSVDGTVRTFDIRV 175
S D+++R WD R T + S +D V +V ++ + I GS+D VR +D
Sbjct: 182 SGSGDRTVRIWDLR---TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 176 G---------RELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLD------------RS 214
G E V + + DG +++ LD +++L + +
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 215 TGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
+G Y GH K F T +D ++ GS+D + FWD + + + H
Sbjct: 299 SGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
+L+GHE + + + G+ +S DRT+R+W+ G S V V V+ +
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG-QCSLTLSIEDGVTTVAVSPGD 218
Query: 73 SKLISCGG-DRQIFYWDVSTGRVIRKF-------RGHESEVNAVKFNEYSSVVVSAGYDQ 124
K I+ G DR + WD TG ++ + GH+ V +V F VVS D+
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR 278
Query: 125 SLRAWDC-----RSHSTEP------IQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTF 171
S++ W+ +S S P + I +D V+SV T+ + I+ GS D V +
Sbjct: 279 SVKLWNLQNANNKSDSKTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFW 337
Query: 172 DIRVGREL 179
D + G L
Sbjct: 338 DKKSGNPL 345
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWN------------PHRGIHIKTYKSHGREV 63
GH+ +V + F DG +S DR+++LWN P+ G TY H V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
V T ++ ++S DR + +WD +G + +GH + V +V SS+
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 17/116 (14%)
Query: 169 RTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDST-----------LRLLDRSTG- 216
R D+ + + L D V C+ SNDG + C +T RL D S
Sbjct: 51 REIDVELHKSL--DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAAN 108
Query: 217 ---ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
E L + C + + G+ED I WD+ + +V + H
Sbjct: 109 KDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 101/240 (42%), Gaps = 37/240 (15%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
V++ H AV A F+ DG SCG D+T++++ G + K+H EV + D+
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAWD 130
+ +C D+++ W+ TG ++ + H +VN F S ++ + D L+ WD
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 131 -----CRS----HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--- 178
CR+ H+ S D +++ C S DGT++ +D E
Sbjct: 736 LNQKECRNTMFGHTNSVNHCRFSPDDKLLASC---------SADGTLKLWDATSANERKS 786
Query: 179 ------------LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE-YKGH 225
+D+ V C S S DG I+ + + L D T LL E + GH
Sbjct: 787 INVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHTGH 845
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 41/298 (13%)
Query: 1 MSVSDLPRTEA-NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW-----NPHRGIHIK 54
+ + DL + E N + GH +V RF+ D SC D T++LW N + I++K
Sbjct: 731 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVK 790
Query: 55 TYKSHGREVR-DVHV-------TADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEV 105
+ + + + D+ V +AD ++++ ++ IF +D+ T ++ + GH S +
Sbjct: 791 QFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTI 849
Query: 106 NAVKFNEYSSVVVSAGYDQSLRAW---------DCRSHSTEPIQIIDSFQDSVMSVCLTK 156
F+ + + V A + W DCR H S+ VM
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHL--------SWVHGVM-FSPDG 900
Query: 157 TEIIGGSVDGTVRTFDI-RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215
+ + S D T+R ++ +V + + L Q V+ + N+ +LA L+L++ T
Sbjct: 901 SSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEV-MVLAVDHIRRLQLINGRT 959
Query: 216 GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273
G++ ++ ++ + CCL+ ++ G E+G I +LV+ + H V
Sbjct: 960 GQI-----DYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTV 1012
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
Query: 58 SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV 117
H + V + TAD LIS D +I W+ + I RGH+ V + + +S +
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLK-NSRL 1064
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRV 175
+S +D +++ W+ + + E + Q +V+S ++ T+ S D T + + +
Sbjct: 1065 LSWSFDGTVKVWNIITGNKEKDFV--CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL 1122
Query: 176 GRELSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK-- 231
L + G V C + S D + + +R+ + S GELL H+C
Sbjct: 1123 LLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL-----HLCAPLSEE 1177
Query: 232 ---------TDCCLTNSDAHVTGGSEDGYIYFWDLV 258
TD C + + S GYI +W++V
Sbjct: 1178 GAATHGGWVTDLCFSPDGKMLI--SAGGYIKWWNVV 1211
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHI------KTYK 57
LP E L+GH G V + F+ D + + IR+WN G +H+ +
Sbjct: 1124 LPLHE---LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAA 1180
Query: 58 SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98
+HG V D+ + D LIS GG I +W+V TG + F
Sbjct: 1181 THGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQTF 1219
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L+GH+ V R + LS D T+++WN G K + H V ++ D +
Sbjct: 1046 LRGHQETVKDFRLLKNSRL-LSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT 1104
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130
K S D+ W + + RGH V F+ S+++ + + +R W+
Sbjct: 1105 KFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH----ICKSFKTDCCLTNSDAHVTGGS 247
S DG I + D TL++ TGE L E K H +C +F TD D + S
Sbjct: 629 FSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD------DRFIATCS 682
Query: 248 EDGYIYFWDLVDASVVAKFKAHS 270
D + W+ + +V + HS
Sbjct: 683 VDKKVKIWNSMTGELVHTYDEHS 705
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI 76
H+G VL+ + D S D+T ++W+ + + + H VR + D++ L
Sbjct: 1090 HQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLA 1149
Query: 77 SCGGDRQIFYWDVSTGRVI 95
+ + +I W+VS G ++
Sbjct: 1150 TGDDNGEIRIWNVSNGELL 1168
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
H G V F+ DG +S G I+ WN G +T+ ++G ++ +HV+ D
Sbjct: 1182 HGGWVTDLCFSPDGKMLISAGG--YIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 84/172 (48%), Gaps = 9/172 (5%)
Query: 14 LKGHEGAVLAARF-NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTAD 71
L+ H +V A+ + N L+ D+TI+LW + IKT+ H VR + V D
Sbjct: 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAV-VD 194
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
+ ISC D I D TG V+R + GHES V +K +VS G D+++R W
Sbjct: 195 DGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK 253
Query: 132 RSHSTEPIQIIDSFQDSVMSV-CLTKTEIIGGSVDGTVRTFDIRVGRELSDD 182
+ S + Q+I S+ SV C + +II GS D VR F R S+D
Sbjct: 254 ENGSLK--QVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQEKSRWASED 303
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 10/196 (5%)
Query: 35 SCGKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI---FYWDVS 90
S +D T+RLW+ + + Y G + V ++ L+ G D I + S
Sbjct: 34 SVSRDGTVRLWSKDDQWLGTVVYTGQGF-LNSVCYDSEKELLLFGGKDTXINGVPLFATS 92
Query: 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM 150
+ GH+ V ++ F + VV+S +D++ + W +Q ++
Sbjct: 93 GEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAK 149
Query: 151 SVCLTKTEIIGGSVDGTVRTF-DIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR 209
V ++ + + S D T++ + + +V + S V +++ +DG+ I S D ++
Sbjct: 150 VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN-DGLIK 208
Query: 210 LLDRSTGELLQEYKGH 225
L+D TG++L+ Y+GH
Sbjct: 209 LVDXHTGDVLRTYEGH 224
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 5 DLPRTEANVLKGHEGAV------LAARFNGDGNYCLSCGKDRTIRLW-------NPHRGI 51
D+ + +L+GH V + + N D +S +D+T+ +W N + GI
Sbjct: 8 DIQVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGI 67
Query: 52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN 111
K H V D+ ++ +N IS D+ + WD+ TG ++F GH+SEV +V F+
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 112 EYSSVVVSAGYDQSLRAW----DCRSHSTE 137
+ ++SAG ++ ++ W +C+ S E
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAE 157
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 32 YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91
Y S G D +++WN + I T+K+H V + ++ + + + G D+++ WD+
Sbjct: 186 YFASVGWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244
Query: 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS------- 144
++ S +N + FN V+ G DQ ++ ++ + S P+ I++
Sbjct: 245 LTYPQREFDAGSTINQIAFNPKLQ-WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE 303
Query: 145 ------FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175
Q + ++ ++ G DG +RTF
Sbjct: 304 GQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 159 IIGGSVDGTVRTFDIRVGRELSDDLGQP----------VNCISMSNDGNCILASCLDSTL 208
+I GS D TV + + E + G P V+ +++S + ++S D TL
Sbjct: 42 LISGSRDKTVMIWKL-YEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258
RL D TG + + GH + + N G + I W+++
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE--IKLWNIL 148
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 13 VLKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDV 66
LKGH G V A + LS +D+TI +W R GI + + H V DV
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 67 HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSL 126
+++D +S D + WD++TG R+F GH +V +V F+ + +VS D+++
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDD 182
+ W+ +Q +S + V V + I+ D V+ +++ + ++
Sbjct: 130 KLWNTLGVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 188
Query: 183 LGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
+G +N +++S DG+ + D L D + G+ L G
Sbjct: 189 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246
V+ + +S+DG L+ D TLRL D +TG + + GH ++ + + G
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS--VAFSSDNRQIVSG 123
Query: 247 SEDGYIYFWD 256
S D I W+
Sbjct: 124 SRDKTIKLWN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 13/224 (5%)
Query: 13 VLKGHEGAVLA-ARFNGDGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDV 66
LKGH G V A + LS +D+TI +W R GI + + H V DV
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 67 HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSL 126
+++D +S D + WD++TG R+F GH +V +V F+ + +VS D+++
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDD 182
+ W+ +Q +S + V V + I+ D V+ +++ + ++
Sbjct: 153 KLWNTLGVCKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211
Query: 183 LGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224
+G +N +++S DG+ + D L D + G+ L G
Sbjct: 212 IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246
V+ + +S+DG L+ D TLRL D +TG + + GH ++ + + G
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLS--VAFSSDNRQIVSG 146
Query: 247 SEDGYIYFWD 256
S D I W+
Sbjct: 147 SRDKTIKLWN 156
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 112/286 (39%), Gaps = 35/286 (12%)
Query: 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
+ L+GH +V+ + NY ++ D+ IR+++ + H V +
Sbjct: 113 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV--VVSAGYDQSLR 127
A L+S DR + WD+ G F GH S V + EY ++ +V+ D +L
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 128 AWDCRSHSTEP---------------------IQIIDSFQDSVMSVCLTKTEIIGGSVDG 166
W S+ P + ++ SV +V ++ GS D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 290
Query: 167 TVRTFDIRVGR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
T+ +D+ + LS + + I CI AS +D+T+R+ D GEL+ +
Sbjct: 291 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQ 349
Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
GH L SD + + DG I WD D S KF H
Sbjct: 350 GHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYS--RKFSYH 389
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
+L GH + + ++ + C+S D TIR+W+ G + T + H V + ++ +
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362
Query: 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
L+S D I WD + RKF H + ++A+ S ++ +G + ++ R
Sbjct: 363 KFLVSAAADGSIRGWDANDYS--RKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLR 420
Query: 133 S 133
S
Sbjct: 421 S 421
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 116/252 (46%), Gaps = 18/252 (7%)
Query: 29 DGNYCLSCGKDRTIRLWNPHR-----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83
+ + +S +D++I LW + G+ + H V DV +++D +S D +
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QII 142
+ WD++ G R+F GH +V +V F+ + +VSA D++++ W+ I +
Sbjct: 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG 513
Query: 143 DSFQDSVMSVCLT----KTEIIGGSVDGTVRTFDI---RVGRELSDDLGQPVNCISMSND 195
+ +D V V + + I+ S D TV+ +++ ++ L+ G V+ +++S D
Sbjct: 514 EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY-VSTVAVSPD 572
Query: 196 GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW 255
G+ + D + L D + G+ L + + S C + + + +E G I W
Sbjct: 573 GSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATEHG-IKIW 628
Query: 256 DLVDASVVAKFK 267
DL S+V K
Sbjct: 629 DLESKSIVEDLK 640
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L GH V + DG + LS D +RLW+ G+ + + H ++V V + DN
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 74 KLISCGGDRQIFYWDVSTGR----VIRKFRGHESEVNAVKF--NEYSSVVVSAGYDQSLR 127
+++S DR I W+ + G + GH V+ V+F N +VSA +D++++
Sbjct: 486 QIVSASRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 128 AW---DCRSHSTEPIQIIDSFQDSVMSVCLTKTEII--GGSVDGTVRTFDIRVGREL 179
W +C+ ST + V +V ++ + G DG V +D+ G++L
Sbjct: 545 VWNLSNCKLRST-----LAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
+ L GH G V + DG+ C S GKD + LW+ G K Y V +
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG--KKLYSLEANSVIHALCFSP 612
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
N + + I WD+ + ++ +
Sbjct: 613 NRYWLCAATEHGIKIWDLESKSIVEDLK 640
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 110/286 (38%), Gaps = 35/286 (12%)
Query: 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT 69
+ L+GH +V+ + NY ++ D+ IR+++ + H V +
Sbjct: 113 QRTTLRGHXTSVITC-LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY- 170
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV--VVSAGYDQSLR 127
A L+S DR + WD+ G F GH S V + EY ++ +V+ D +L
Sbjct: 171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230
Query: 128 AWDCRSHSTEP---------------------IQIIDSFQDSVMSVCLTKTEIIGGSVDG 166
W S+ P + ++ SV +V ++ GS D
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDN 290
Query: 167 TVRTFDIRVGR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223
T+ +D+ + LS + + I CI AS D+T+R+ D GEL +
Sbjct: 291 TLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASX-DTTIRIWDLENGELXYTLQ 349
Query: 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
GH L SD + + DG I WD D S KF H
Sbjct: 350 GHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYS--RKFSYH 389
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
S+ +L E NV L GH G + RF D S G D T LW+ G T+
Sbjct: 133 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 191
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
H +V + + D +S D WDV G + F GHES++NA+ F +
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 251
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
+ D + R +D R+ D+ + SV +K+ ++ G D +D
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 311
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
R G D V+C+ +++DG + DS L++
Sbjct: 312 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 349
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
L+GH + A + D +S +D + +W+ + T K H +R V
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 115
Query: 70 -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
A + ++CGG D +++ T RV R+ GH ++ +F + + +V S+G D
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 174
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
+ WD + + +S+ + G+ D + + +D+R G R+
Sbjct: 175 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 234
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
+N I +GN D+T RL D + L Y T + S
Sbjct: 235 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 294
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ G +D WD + A H V L
Sbjct: 295 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 329
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
R R RGH +++ A+ + S ++VSA D L WD S++T + I VM+
Sbjct: 57 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTC 114
Query: 153 CLTKT--EIIGGSVDG-------TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC 203
+ + G +D R ++RV REL+ G C + D N I+ S
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSS 172
Query: 204 LDSTLRLLD 212
D+T L D
Sbjct: 173 GDTTCALWD 181
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVT 69
GHE + A F +GN + D T RL++ + TY SH + V +
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFS 290
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L++ D WD GH++ V+ + + V + +D L+ W
Sbjct: 291 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 130 D 130
+
Sbjct: 351 N 351
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
S+ +L E NV L GH G + RF D S G D T LW+ G T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
H +V + + D +S D WDV G + F GHES++NA+ F +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
+ D + R +D R+ D+ + SV +K+ ++ G D +D
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
R G D V+C+ +++DG + DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
L+GH + A + D LS +D + +W+ + T K H +R V
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70 -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
A + ++CGG D +++ T RV R+ GH ++ +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
+ WD + + +S+ + G+ D + + +D+R G R+
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
+N I +GN D+T RL D + L Y T + S
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ G +D WD + A H V L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
R R RGH +++ A+ + S +++SA D L WD S++T + I VM+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTC 103
Query: 153 CLTKT--EIIGGSVDG-------TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC 203
+ + G +D R ++RV REL+ G C + D N I+ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSS 161
Query: 204 LDSTLRLLD 212
D+T L D
Sbjct: 162 GDTTCALWD 170
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVT 69
GHE + A F +GN + D T RL++ + TY SH + V +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFS 279
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L++ D WD GH++ V+ + + V + +D L+ W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 130 D 130
+
Sbjct: 340 N 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
S+ +L E NV L GH G + RF D S G D T LW+ G T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
H +V + + D +S D WDV G + F GHES++NA+ F +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
+ D + R +D R+ D+ + SV +K+ ++ G D +D
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
R G D V+C+ +++DG + DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
L+GH + A + D LS +D + +W+ + T K H +R V
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70 -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
A + ++CGG D +++ T RV R+ GH ++ +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
+ WD + + +S+ + G+ D + + +D+R G R+
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
+N I +GN D+T RL D + L Y T + S
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ G +D WD + A H V L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
R R RGH +++ A+ + S +++SA D L WD S++T + I VM+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTC 103
Query: 153 CLTKT--EIIGGSVDG-------TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC 203
+ + G +D R ++RV REL+ G C + D N I+ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSS 161
Query: 204 LDSTLRLLD 212
D+T L D
Sbjct: 162 GDTTCALWD 170
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVT 69
GHE + A F +GN + D T RL++ + TY SH + V +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFS 279
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L++ D WD GH++ V+ + + V + +D L+ W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 130 D 130
+
Sbjct: 340 N 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
S+ +L E NV L GH G + RF D S G D T LW+ G T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
H +V + + D +S D WDV G + F GHES++NA+ F +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
+ D + R +D R+ D+ + SV +K+ ++ G D +D
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
R G D V+C+ +++DG + DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
L+GH + A + D +S +D + +W+ + T K H +R V
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70 -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
A + ++CGG D +++ T RV R+ GH ++ +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
+ WD + + +S+ + G+ D + + +D+R G R+
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
+N I +GN D+T RL D + L Y T + S
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ G +D WD + A H V L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
R R RGH +++ A+ + S ++VSA D L WD S++T + I VM+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTC 103
Query: 153 CLTKT--EIIGGSVDG-------TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC 203
+ + G +D R ++RV REL+ G C + D N I+ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSS 161
Query: 204 LDSTLRLLD 212
D+T L D
Sbjct: 162 GDTTCALWD 170
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVT 69
GHE + A F +GN + D T RL++ + TY SH + V +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFS 279
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L++ D WD GH++ V+ + + V + +D L+ W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 130 D 130
+
Sbjct: 340 N 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 14/220 (6%)
Query: 2 SVSDLPRTEANV-----LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
S+ +L E NV L GH G + RF D S G D T LW+ G T+
Sbjct: 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCALWDIETGQQTTTF 180
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
H +V + + D +S D WDV G + F GHES++NA+ F +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 117 VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI- 173
+ D + R +D R+ D+ + SV +K+ ++ G D +D
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 174 ---RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
R G D V+C+ +++DG + DS L++
Sbjct: 301 KADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKI 338
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/275 (21%), Positives = 103/275 (37%), Gaps = 17/275 (6%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--- 69
L+GH + A + D +S +D + +W+ + T K H +R V
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCA 104
Query: 70 -ADNSKLISCGG-DRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYD 123
A + ++CGG D +++ T RV R+ GH ++ +F + + +V S+G D
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-D 163
Query: 124 QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG--RELSD 181
+ WD + + +S+ + G+ D + + +D+R G R+
Sbjct: 164 TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223
Query: 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241
+N I +GN D+T RL D + L Y T + S
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283
Query: 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ G +D WD + A H V L
Sbjct: 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152
R R RGH +++ A+ + S ++VSA D L WD S++T + I VM+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD--SYTTNKVHAIPLRSSWVMTC 103
Query: 153 CLTKT--EIIGGSVDG-------TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASC 203
+ + G +D R ++RV REL+ G C + D N I+ S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL--DDNQIVTSS 161
Query: 204 LDSTLRLLD 212
D+T L D
Sbjct: 162 GDTTCALWD 170
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 4/121 (3%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR---EVRDVHVT 69
GHE + A F +GN + D T RL++ + TY SH + V +
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFS 279
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
L++ D WD GH++ V+ + + V + +D L+ W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 130 D 130
+
Sbjct: 340 N 340
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 17/217 (7%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHV 68
NVL H +++ ++N DG + +S + LWN G H + ++ G + +
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 69 TADNS-----------KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV 117
+ D S K + G IF + ++ K GH ++ ++FN+ + ++
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGR 177
+SA D +LR W + +++ S Q V + + ++I S+DG+VR + ++
Sbjct: 263 LSASDDGTLRIWHGGNGNSQNCFYGHS-QSIVSASWVGDDKVISCSMDGSVRLWSLKQNT 321
Query: 178 ELSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLD 212
L+ + G P+ +S DG + +D + + D
Sbjct: 322 LLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 8 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVH 67
+T L GH G + FN LS D T+R+W+ G + H + +
Sbjct: 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS 296
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVI 95
D+ K+ISC D + W + ++
Sbjct: 297 WVGDD-KVISCSMDGSVRLWSLKQNTLL 323
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246
V C++ S+DGN I+ + LRL ++ TG LL H ++ H+
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNK-TGALLNVLNFH--RAPIVSVKWNKDGTHIISM 167
Query: 247 SEDGYIYFWDLVDASVVAKFK 267
+ W+++ +V+ F+
Sbjct: 168 DVENVTILWNVISGTVMQHFE 188
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 106/247 (42%), Gaps = 30/247 (12%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L GHE + ++N +G+ SC KD + +W G + T H + + V
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF----NEYSSVVVSAGYDQ-SLRA 128
++ D I WDVS G+ + ++ V V+F N + +++ + + S+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146
Query: 129 W----DCRSH-----STEPIQII---DSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIRV 175
+ D +H S EPI I + + ++ TK + II G DG + +D+
Sbjct: 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206
Query: 176 GRELSDDLG---QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKT 232
E D + + ++ + S D + S D+ L+D ST ++L++Y +T
Sbjct: 207 NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY--------ET 258
Query: 233 DCCLTNS 239
DC L +
Sbjct: 259 DCPLNTA 265
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV---C 153
K GHE + VK+N+ ++ S D S W S + E + +D ++ S+ C
Sbjct: 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW--YSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 154 LTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLR 209
TK + GS D +++ +D+ G+ ++ PV + S GN LA LD+ ++
Sbjct: 85 FTKY-CVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLA-ILDNVMK 139
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 28/276 (10%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN 72
L+GH G V + + + N+ +S +D + +WN K H V + A N
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAF-APN 119
Query: 73 SKLISCGG-DRQIFYWDVST----------GRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
+ ++CGG D +++S+ RV+ +G+ S V E + +++
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE--TRLITGS 177
Query: 122 YDQSLRAWDCRSHSTEPI---QIIDSFQDSVMSV---CLTKTEIIGGSVDGTVRTFDIRV 175
DQ+ WD + I + V+S+ L I GS D TVR +D+R+
Sbjct: 178 GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237
Query: 176 -GRELSDDLGQP--VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKT 232
R + G +N + DG D T RL D TG LQ Y ++
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNE 297
Query: 233 DCCLTNSDAHVTG-----GSEDGYIYFWDLVDASVV 263
+T+ ++G G +G Y WD + A +V
Sbjct: 298 LPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 11 ANVLKGHEGAVLAARFNGDGNYCLSCGK-DRTIRLWNPHRGIHIKTYKS-----HGREVR 64
+ VL GH+G + ++ D L G D+T LW+ G I + S H +V
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 65 DVHVTADNSKLISCGG-DRQIFYWDVS-TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
+ + + N+ + G D + WD+ T R +R + GHE ++N+VKF +
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 123 DQSLRAWDCRS------HSTEP------IQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRT 170
D + R +D R+ ++ EP + I+ S S+ L G +G
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL-----FAGYSNGDCYV 324
Query: 171 FDIRVGRELSDDLGQPVN-------CISMSNDGNCILASCLDSTLRL 210
+D + E+ +LG N C+ +S+DG+ + D L++
Sbjct: 325 WDTLLA-EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 85/208 (40%), Gaps = 17/208 (8%)
Query: 35 SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV 94
S + RT +NP + +T + H +V + T + + ++S D ++ W+ T +
Sbjct: 41 SKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Query: 95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----PIQIIDSFQDSVM 150
+ H V F V G D + ++ S + P+ + +
Sbjct: 101 THAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA 160
Query: 151 SVCL----TKTEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSN---DGNC 198
S C +T +I GS D T +D+ G+ +S G + +S+S + N
Sbjct: 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANM 220
Query: 199 ILASCLDSTLRLLD-RSTGELLQEYKGH 225
++ D+T+RL D R T ++ Y GH
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGH 248
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 11/130 (8%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-------VRDVHV 68
GHEG + + +F DG + D T RL++ G ++ Y V V
Sbjct: 247 GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306
Query: 69 TADNSKLISCGGDRQIFYWDVSTGRVIRKF----RGHESEVNAVKFNEYSSVVVSAGYDQ 124
+ L + + + WD ++ HE ++ + + S + + +D+
Sbjct: 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366
Query: 125 SLRAWDCRSH 134
+L+ W H
Sbjct: 367 NLKIWAFSGH 376
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14 LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
L+GH+ +N + N Y LS D TI LW+ HR I K + H V D
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 66 VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
V + L S D+++ WD +T + H +EVN + FN YS +++ G
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 296
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
D+++ WD R+ + + +S +D + V + +T + D + +D+ ++G
Sbjct: 297 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 355
Query: 177 RELS 180
E S
Sbjct: 356 EEQS 359
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14 LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
L+GH+ +N + N Y LS D TI LW+ HR I K + H V D
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 66 VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
V + L S D+++ WD +T + H +EVN + FN YS +++ G
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 298
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
D+++ WD R+ + + +S +D + V + +T + D + +D+ ++G
Sbjct: 299 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 357
Query: 177 RELS 180
E S
Sbjct: 358 EEQS 361
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 18/184 (9%)
Query: 14 LKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWN------PHRGIHIKT-YKSHGREVRD 65
L+GH+ +N + N Y LS D TI LW+ HR I K + H V D
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 66 VHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
V + L S D+++ WD +T + H +EVN + FN YS +++ G
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATG 300
Query: 122 -YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RVG 176
D+++ WD R+ + + +S +D + V + +T + D + +D+ ++G
Sbjct: 301 SADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIG 359
Query: 177 RELS 180
E S
Sbjct: 360 EEQS 363
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157
GH+ V +V + + S+ D +R WD + + I+ ID+ ++ +
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPD 133
Query: 158 E--IIGGSVDGTVRTFDIRVGR-ELS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213
+ G+ G V F + G+ E S D G+ + I+ S DG + + +D + + D
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 214 STGELLQEYKGHICK----SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269
+TG+LL +GH +F D L + S+DGYI +D+ A++ H
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQL------LVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 270 S 270
+
Sbjct: 248 A 248
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD 71
+ L+GH + + F+ D ++ D I++++ T H V +V D
Sbjct: 200 HTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD 259
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
++ +S D+ + WDV T + F H+ +V VK+N S +VS G DQ + +DC
Sbjct: 260 DTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 82/193 (42%), Gaps = 10/193 (5%)
Query: 92 GRVIRKFRGHESEVNAVKF----NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD 147
G + ++ + H+ + +V + E S VV+ D ++ W R + ++ Q
Sbjct: 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQL 81
Query: 148 SVMSVCLTKTEIIGGS--VDGTVRTFDIRVGRELSDDLGQPVNC--ISMSNDGNCILASC 203
V+SV ++ T I S +D +R +D+ G+++ PV+ ++ S D +
Sbjct: 82 GVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 204 LDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263
+ + +G+ +EY F + ++ G+ DG I +D+ ++
Sbjct: 142 HVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 264 AKFKAHSLVVKLL 276
+ H++ ++ L
Sbjct: 200 HTLEGHAMPIRSL 212
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 75/193 (38%), Gaps = 8/193 (4%)
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ 140
D I WD+ G+ I+ + + F+ S + + + + + S E
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--Y 158
Query: 141 IIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDDLGQ--PVNCISMSNDG 196
+D+ ++S+ + + G++DG + FDI G+ L G P+ ++ S D
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 197 NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
++ + D +++ D L GH S+ + D H S D + WD
Sbjct: 219 QLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWD 276
Query: 257 LVDASVVAKFKAH 269
+ + V F H
Sbjct: 277 VGTRTCVHTFFDH 289
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%)
Query: 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG 80
+L+ ++ DG Y S D I +++ G + T + H +R + + D+ L++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
D I +DV + GH S V V F + VS+ D+S++ WD
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV 277
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/107 (19%), Positives = 49/107 (45%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
F+ D Y + + ++ G + + G+ + + + D L S D I
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
+D++TG+++ GH + ++ F+ S ++V+A D ++ +D +
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA 70
A L GH VL F D + +S D+++++W+ + T+ H +V V
Sbjct: 241 AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300
Query: 71 DNSKLISCGGDRQIFYWD 88
+ SK++S G D++I +D
Sbjct: 301 NGSKIVSVGDDQEIHIYD 318
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 8 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46
RT + H+ V ++NG+G+ +S G D+ I +++
Sbjct: 280 RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWN---PHRGIHIKTYKSHGREVRDVHVT 69
+GHE V+ FN + G DRT+++W+ + T + G D +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D +I+ D I WD T + GH S V+ F+ +++S D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
+ ++ E
Sbjct: 256 NSSTYKVE 263
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
F+ + L+ + LWN + +++ + VR A + +I D +I
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF 145
++ +TG + F H + ++ + V+S D +++ W+ ++ Q +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGH 139
Query: 146 QDSVMSVCLTKTE---IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMS 193
+ VM V + G +D TV+ F + G+E + V+ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLP 196
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYI 252
+ I AS D T+++ D T + +GH+ SF + + GSEDG +
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTL 252
Query: 253 YFWD 256
W+
Sbjct: 253 KIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWN---PHRGIHIKTYKSHGREVRDVHVT 69
+GHE V+ FN + G DRT+++W+ + T + G D +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D +I+ D I WD T + GH S V+ F+ +++S D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
+ ++ E
Sbjct: 256 NSSTYKVE 263
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/244 (19%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
F+ + L+ + LWN + +++ + VR A + +I D +I
Sbjct: 21 FHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80
Query: 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF 145
++ +TG + F H + ++ + V+S D +++ W+ ++ Q +
Sbjct: 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGH 139
Query: 146 QDSVMSVCLTKTE---IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMS 193
+ VM V + G +D TV+ F + G+E + V+ +
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLP 196
Query: 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYI 252
+ I AS D T+++ D T + +GH+ SF + + GSEDG +
Sbjct: 197 DKPYMITASD-DLTIKIWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTL 252
Query: 253 YFWD 256
W+
Sbjct: 253 KIWN 256
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVT 69
+GHE V+ FN + G DRT+++W+ + + T + G D +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D +I+ D I WD T + GH S V+ F+ +++S D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
+ ++ E
Sbjct: 256 NSSTYKVE 263
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 21/228 (9%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101
+ LWN + +++ + VR A + +I D +I ++ +TG + F H
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 102 ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--- 158
+ ++ + V+S D +++ W+ ++ Q + + VM V +
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPST 155
Query: 159 IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR 209
G +D TV+ F + G+E + V+ + + I AS D T++
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLPDKPYMITASD-DLTIK 211
Query: 210 LLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
+ D T + +GH+ SF + + GSEDG + W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVT 69
+GHE V+ FN + G DRT+++W+ + + T + G D +
Sbjct: 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL 195
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
D +I+ D I WD T + GH S V+ F+ +++S D +L+ W
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 130 DCRSHSTE 137
+ ++ E
Sbjct: 256 NSSTYKVE 263
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 21/228 (9%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101
+ +WN + +++ + VR A + +I D +I ++ +TG + F H
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH 96
Query: 102 ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--- 158
+ ++ + V+S D +++ W+ ++ Q + + VM V +
Sbjct: 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE-QTFEGHEHFVMCVAFNPKDPST 155
Query: 159 IIGGSVDGTVR---------TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR 209
G +D TV+ F + G+E + V+ + + I AS D T++
Sbjct: 156 FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY---VDYYPLPDKPYMITASD-DLTIK 211
Query: 210 LLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYIYFWD 256
+ D T + +GH+ SF + + GSEDG + W+
Sbjct: 212 IWDYQTKSCVATLEGHMSNVSF---AVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 20/187 (10%)
Query: 14 LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRG--IHIKT-YKSHGREVR 64
L+GH EG L+ N G + LS D TI LW+ P G + KT + H V
Sbjct: 173 LRGHQKEGYGLSWNPNLSG-HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 65 DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
DV + L S D+++ WD +T + H +EVN + FN YS +++
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILAT 291
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
G D+++ WD R+ + + +S +D + V + +T + D + +D+ ++
Sbjct: 292 GSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKI 350
Query: 176 GRELSDD 182
G E S +
Sbjct: 351 GEEQSPE 357
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 14 LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRGIHIKT---YKSHGREVR 64
L+GH EG L+ N G + LS D T+ LW+ P G + + H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSG-HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65 DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
DV + L S D+++ WD +T + H +EVN + FN YS +++
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
G D+++ WD R+ + + +S +D + V + +T + D + +D+ ++
Sbjct: 294 GSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 176 GRELS 180
G E S
Sbjct: 353 GEEQS 357
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17 HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
H+GAV A + + L+ G DR IR+WN G + +H +V + +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 253
Query: 74 KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
+LIS G Q+ W T + + +GH S V ++ + + V SA D++LR W C
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVT 69
L GH V R+ DG + S G D + +W G + ++T+ H V+ V
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 70 ADNSKLISCGG---DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS 125
S +++ GG DR I W+V +G + H + + Y ++ G+ Q+
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN 264
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 84/209 (40%), Gaps = 18/209 (8%)
Query: 81 DRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135
D ++ W S+G +++ + + S V +K Y +V S+ ++ WD +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLWDVQQQK 100
Query: 136 TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QPVNCISM 192
++ + S V S+ + GS G + D+RV L Q V +
Sbjct: 101 R--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW 158
Query: 193 SNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAHVTGG-S 247
+ DG + + D+ + + + GE LQ + H C S+ TGG +
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 248 EDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
D +I W++ + ++ AHS V +L
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-QIFYW 87
+GNY ++LW+ + ++ SH V + + NS ++S G I +
Sbjct: 78 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL---SWNSYILSSGSRSGHIHHH 134
Query: 88 DVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDS 144
DV + GH EV +++ + S G D + W P+Q
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 145 FQDSVMSV--CLTKTEII---GGSVDGTVRTFDIRVGRELS 180
Q +V +V C ++ ++ GG+ D +R +++ G LS
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 235
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW 45
LKGH VL+ + DG S D T+RLW
Sbjct: 280 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 20/185 (10%)
Query: 14 LKGH--EGAVLAARFNGDGNYCLSCGKDRTIRLWN----PHRGIHIKT---YKSHGREVR 64
L+GH EG L+ N G + LS D T+ LW+ P G + + H V
Sbjct: 175 LRGHQKEGYGLSWNSNLSG-HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 65 DVHVTADNSKLI-SCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
DV + L S D+++ WD +T + H +EVN + FN YS +++
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILAT 293
Query: 121 G-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGTVRTFDI-RV 175
G D+++ WD R+ + + +S +D + V + +T + D + +D+ ++
Sbjct: 294 GSADKTVALWDLRNLKLK-LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKI 352
Query: 176 GRELS 180
G E S
Sbjct: 353 GEEQS 357
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
L+GH V + DG S G D +++W+ I T +H V+ V S
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 74 KLISCGG---DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA-GY-DQSLRA 128
L++ GG D+QI +W+ +TG + S+V ++ ++ +S ++S G+ D +L
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFPDNNLSI 331
Query: 129 WDCRS 133
W S
Sbjct: 332 WSYSS 336
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 9/211 (4%)
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE-VNAVKFNEYSSVVVSAGYDQSL-RAW 129
N +++ +R ++ W+ +G V ES V +VK++ S + S G L +
Sbjct: 103 NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFL-SVGLGNGLVDIY 161
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDL---GQP 186
D S + ++ + Q V + + + GS G + D+R+ L
Sbjct: 162 DVESQTK--LRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE 219
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246
V ++ +DG + + D+ +++ D + H C S+ TGG
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG 279
Query: 247 -SEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
+ D I+FW+ + V A S V L+
Sbjct: 280 GTMDKQIHFWNAATGARVNTVDAGSQVTSLI 310
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17 HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
H+GAV A + + L+ G DR IR+WN G + +H +V + +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 333
Query: 74 KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
+LIS G Q+ W T + + +GH S V ++ + + V SA D++LR W C
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 18/215 (8%)
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAW 129
+++ D ++ W S+G +++ + + S V +K Y +V S+ ++ W
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLW 174
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QP 186
D + ++ + S V S+ + GS G + D+RV L Q
Sbjct: 175 DVQQQKR--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAH 242
V + + DG + + D+ + + + GE LQ + H C S+
Sbjct: 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 292
Query: 243 VTGG-SEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
TGG + D +I W++ + ++ AHS V +L
Sbjct: 293 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-QIFYW 87
+GNY ++LW+ + ++ SH V + + NS ++S G I +
Sbjct: 158 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL---SWNSYILSSGSRSGHIHHH 214
Query: 88 DVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDS 144
DV + GH EV +++ + S G D + W P+Q
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 145 FQDSVMSV--CLTKTEII---GGSVDGTVRTFDIRVGRELS 180
Q +V +V C ++ ++ GG+ D +R +++ G LS
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW 45
LKGH VL+ + DG S D T+RLW
Sbjct: 360 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 17 HEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
H+GAV A + + L+ G DR IR+WN G + +H +V + +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYK 344
Query: 74 KLISCGG--DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131
+LIS G Q+ W T + + +GH S V ++ + + V SA D++LR W C
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 87/215 (40%), Gaps = 18/215 (8%)
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHE-----SEVNAVKFNEYSSVVVSAGYDQSLRAW 129
+++ D ++ W S+G +++ + + S V +K Y +V S+ ++ W
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA---EVQLW 185
Query: 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---QP 186
D + ++ + S V S+ + GS G + D+RV L Q
Sbjct: 186 DVQQQKR--LRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 243
Query: 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGE----LLQEYKGHICKSFKTDCCLTNSDAH 242
V + + DG + + D+ + + + GE LQ + H C S+
Sbjct: 244 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVL 303
Query: 243 VTGG-SEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276
TGG + D +I W++ + ++ AHS V +L
Sbjct: 304 ATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 12/161 (7%)
Query: 29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-QIFYW 87
+GNY ++LW+ + ++ SH V + + NS ++S G I +
Sbjct: 169 EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL---SWNSYILSSGSRSGHIHHH 225
Query: 88 DVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE--PIQIIDS 144
DV + GH EV +++ + S G D + W P+Q
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 145 FQDSVMSV--CLTKTEII---GGSVDGTVRTFDIRVGRELS 180
Q +V +V C ++ ++ GG+ D +R +++ G LS
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 326
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLW 45
LKGH VL+ + DG S D T+RLW
Sbjct: 371 LKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 103/278 (37%), Gaps = 35/278 (12%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-------IKTYKSHGREVRDVHV 68
H+ A+ + + + + D T+ +W + + H EV+ V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 69 TADNSKLISCGGDRQIFYWDVSTG----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ 124
+ D L +C D+ ++ W+ I + H +V V ++ +++ S+ YD
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELS 180
++R W E + +++ + +V S KTE + GS D TVR + E
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDE-- 233
Query: 181 DDLGQPVNCISMSND------------GNCILASC-LDSTLRLLDRSTGELLQEYKGHIC 227
D Q C ++ D N ++AS D L + + GE K +C
Sbjct: 234 -DDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALC 292
Query: 228 KSFK----TDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261
N + G +DG + FW L A+
Sbjct: 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEKAA 330
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 1 MSVSDL----PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY 56
+S+ DL PR +A L A A + D C SC D I +W+ H ++ +
Sbjct: 121 LSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
Query: 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116
+ H + ++ D +KL + G D + WD+ GR +++ ++++S
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-------------HDFTSQ 226
Query: 117 VVSAGY 122
+ S GY
Sbjct: 227 IFSLGY 232
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 29 DGNYCLSCGKDRTIRLWN---PHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85
DG + G+ T+ +W+ P I + S + ++ D+ SC D I
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAE-LTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132
WD+ ++R+F+GH + + + + + + G D ++R+WD R
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 57/162 (35%), Gaps = 42/162 (25%)
Query: 63 VRDVHVTADNSKLISCGGDRQIFYWDVS--TGRVIRKFRGHESEVNAVKFNEYSSVVVSA 120
+R + D LI G + WD++ T R+ + A+ + S V S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 121 GYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS 180
D ++ WD + + ++ FQ G DG
Sbjct: 160 CSDGNIAVWDLHNQT-----LVRQFQ---------------GHTDG-------------- 185
Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY 222
+CI +SNDG + LD+T+R D G LQ++
Sbjct: 186 ------ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH 221
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI 76
HE VL+ +F G + +S GKD + W G I K V ++ D+ ++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322
Query: 77 SCGGDRQIFYWDV 89
+ GD++ ++V
Sbjct: 323 TGSGDKKATVYEV 335
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 38/237 (16%)
Query: 61 REVRDVHVTADNSKLISCGGDRQI--FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV- 117
+ HVTAD G Q F D G I + H ++N + E V
Sbjct: 10 KPAYSFHVTAD--------GQMQPVPFPPDALIGPGIPR---HARQINTLNHGEVVCAVT 58
Query: 118 -------VSAGYDQSLRAWDCRSH--STEPIQIIDSF-QDSVMSVCLTK----TEIIGGS 163
V G ++ WD SH + P+ +D +D+ + C T I+GG
Sbjct: 59 ISNPTRHVYTGGKGCVKVWDI-SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117
Query: 164 VDGTVRTFDI-----RVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218
T+ +D+ R+ EL+ +++S D + C D + + D L
Sbjct: 118 AS-TLSIWDLAAPTPRIKAELTSS-APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTL 175
Query: 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275
+++++GH + D ++N + G D + WDL + + + S + L
Sbjct: 176 VRQFQGHTDGASCID--ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSL 230
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKS--HGREVRDVHVTADNSKLISCGGDR 82
+N G SCG DR IR+W I K+ S H R VR V + + L S D
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 83 QIFYWDVSTG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC-RSHSTEPI 139
W + + GHE+EV +V + +++ + D+S+ W+ E +
Sbjct: 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 140 QIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGN 197
+++S V V ++ + S D TV+ + RE DD V C ++ +
Sbjct: 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY-----REEEDDW---VCCATLEGHES 195
Query: 198 CILASCLDSTLRLL 211
+ + D + + L
Sbjct: 196 TVWSLAFDPSGQRL 209
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADN 72
+GH+ V ++ GNY S D T +W ++ + T + H EV+ V
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 73 SKLISCGGDRQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127
+ L +C D+ ++ W+V + H +V V ++ ++ SA YD +++
Sbjct: 118 NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH---IKTYKSHGREVRDVHV 68
L+GHE V + + GN +C +D+++ +W + SH ++V+ V
Sbjct: 99 TTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW 158
Query: 69 TADNSKLISCGGDR--QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSL 126
L S D +++ + GHES V ++ F+ + S D+++
Sbjct: 159 HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTV 218
Query: 127 RAW 129
R W
Sbjct: 219 RIW 221
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 25/124 (20%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-----RGIHI----KTYKS----- 58
L+GHE V + F+ G SC DRT+R+W + +G+ ++K
Sbjct: 189 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS 248
Query: 59 --HGREVRDVHVTADNSKL-ISCGGDR-QIFYWDVSTGRVIRKF-------RGHESEVNA 107
H R + D+ L +CG D ++F D ++ F + H +VN
Sbjct: 249 GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNC 308
Query: 108 VKFN 111
V +N
Sbjct: 309 VAWN 312
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
IR+ NP IK Y HG + ++ D + L+S D + W++ T ++ F
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 99 -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
GH EV + ++ ++S G D SL+ W
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 224
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 GHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTAD 71
GH A+ +F+ D N LS KD +RLWN + + + H EV
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
K++SCG D + W +++ R++ +
Sbjct: 209 GEKIMSCGMDHSLKLWRINSKRMMNAIK 236
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
++GH VL+A ++ G +SCG D +++LW I+ K + +E D + N
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR----INSKRMMNAIKESYDYNPNKTNR 248
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKF 98
IS ++I + D ST + R +
Sbjct: 249 PFIS----QKIHFPDFSTRDIHRNY 269
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
IR+ NP IK Y HG + ++ D + L+S D + W++ T ++ F
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 99 -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
GH EV + ++ ++S G D SL+ W
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 188
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 GHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTAD 71
GH A+ +F+ D N LS KD +RLWN + + + H EV
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
K++SCG D + W +++ R++ +
Sbjct: 173 GEKIMSCGMDHSLKLWRINSKRMMNAIK 200
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
++GH VL+A ++ G +SCG D +++LW I+ K + +E D + N
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR----INSKRMMNAIKESYDYNPNKTNR 212
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKF 98
IS ++I + D ST + R +
Sbjct: 213 PFIS----QKIHFPDFSTRDIHRNY 233
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
IR+ NP IK Y HG + ++ D + L+S D + W++ T ++ F
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 99 -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
GH EV + ++ ++S G D SL+ W
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 GHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTAD 71
GH A+ +F+ D N LS KD +RLWN + + + H EV
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
K++SCG D + W +++ R++ +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
++GH VL+A ++ G +SCG D +++LW I+ K + +E D + N
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR----INSKRMMNAIKESYDYNPNKTNR 211
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKF 98
IS ++I + D ST + R +
Sbjct: 212 PFIS----QKIHFPDFSTRDIHRNY 232
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
IR+ NP IK Y HG + ++ D + L+S D + W++ T ++ F
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 99 -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
GH EV + ++ ++S G D SL+ W
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 183
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 GHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTAD 71
GH A+ +F+ D N LS KD +RLWN + + + H EV
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
K++SCG D + W +++ R++ +
Sbjct: 168 GEKIMSCGMDHSLKLWRINSKRMMNAIK 195
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
++GH VL+A ++ G +SCG D +++LW I+ K + +E D + N
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR----INSKRMMNAIKESYDYNPNKTNR 207
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKF 98
IS ++I + D ST + R +
Sbjct: 208 PFIS----QKIHFPDFSTRDIHRNY 228
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKF-- 98
IR+ NP IK Y HG + ++ D + L+S D + W++ T ++ F
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 99 -RGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129
GH EV + ++ ++S G D SL+ W
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLW 187
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 16 GHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTAD 71
GH A+ +F+ D N LS KD +RLWN + + + H EV
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIRKFR 99
K++SCG D + W +++ R++ +
Sbjct: 172 GEKIMSCGMDHSLKLWRINSKRMMNAIK 199
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
++GH VL+A ++ G +SCG D +++LW I+ K + +E D + N
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWR----INSKRMMNAIKESYDYNPNKTNR 211
Query: 74 KLISCGGDRQIFYWDVSTGRVIRKF 98
IS ++I + D ST + R +
Sbjct: 212 PFIS----QKIHFPDFSTRDIHRNY 232
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV-TADNSKL 75
H+ V DG +S GKD ++++W+ + +K+Y +H EV V ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 76 ISCGGDRQIFYWDV 89
+SCG D +I WD
Sbjct: 198 LSCGEDGRILLWDT 211
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF-NEYSSVV 117
H V+ + V +D ++ +S G D + WD+S V++ + H SEVN V ++
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIID 143
+S G D + WD R +P ID
Sbjct: 198 LSCGEDGRILLWDTR--KPKPATRID 221
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK 74
+ H + +F G +S +D +++W+ G + +T H V D+ +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHE------------------------SEVNAVKF 110
++S D I W+ TG I F E S+ N ++F
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGT 167
Y V++ + + S + IQ+ F S S+ + I G +G
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 311
Query: 168 VRTFDIR-----VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
+ +D+R VG L ++ G P+N + + G ++S D++++L
Sbjct: 312 LAQWDLRSPECPVGEFLINE-GTPINNVYFA-AGALFVSSGFDTSIKL 357
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101
I++ + + + + ++H E+ + LIS D Q+ W V G R GH
Sbjct: 118 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 177
Query: 102 ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST 136
+ V + + V+SA D ++R W+C + +T
Sbjct: 178 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 212
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR-EVRDVHVTADNSK 74
H G+V ++ DG S D+TI++WN KT R E + + +
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA 296
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS- 133
L+S + I + + G + + GH + A+ + + SA + + +WD +
Sbjct: 297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 134 ---------HSTEPIQIIDSFQDSVMSVCL---TKTEIIGGS-VDGTVRTFDIRVGRELS 180
H+T I + + + +V K GGS VD + V +LS
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSK-----AVANKLS 411
Query: 181 DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC-CLTNS 239
QP+ +++S DG+ +A+C + S G+L + + S+ + C L+N
Sbjct: 412 S---QPLG-LAVSADGDIAVAACYK---HIAIYSHGKLTE-----VPISYNSSCVALSND 459
Query: 240 DAHVTGGSEDGYIYFWDLVDASV 262
V G +D ++ + L ASV
Sbjct: 460 KQFVAVGGQDSKVHVYKLSGASV 482
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-------SHGREVRDVHVT 69
H V + R+N DG+ S G D TI L+N G ++ +H V + +
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 70 ADNSKLISCGGDRQIFYWDVSTGRV 94
D +K+ S D+ I W+V+T +V
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKV 273
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLW---NPHRGIHIKTYKSHGREVRDVHVTADNS 73
H + + F+ +G + ++ + R + + N H ++ H +V V + DN
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 74 KLISCGGDRQIFYWDV---STGRVIRKFRGHESEVNAVKF-NEYSSVVVSAGYDQSLRAW 129
+L + D + W++ S +I K S VN+V + NE + +VSAG D +++ W
Sbjct: 550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE--TTIVSAGQDSNIKFW 607
Query: 130 DC 131
+
Sbjct: 608 NV 609
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRDV 66
T+ + H A+ + G YC S +R+W+ + HI T V+D+
Sbjct: 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 109
Query: 67 HVTADNSKLISCGGDRQ----IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY 122
+++ ++ + G R+ +F +D TG G +N+V F + +G
Sbjct: 110 SWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 167
Query: 123 DQSLRA 128
D + A
Sbjct: 168 DDNTVA 173
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 35/228 (15%)
Query: 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK 74
+ H + +F G +S +D +++W+ G + +T H V D+ +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 75 LISCGGDRQIFYWDVSTGRVIRKFRGHE------------------------SEVNAVKF 110
++S D I W+ TG I F E S+ N ++F
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 111 NEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGT 167
Y V++ + + S + IQ+ F S S+ + I G +G
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKE-QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM 314
Query: 168 VRTFDIR-----VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210
+ +D+R VG L ++ G P+N + + G ++S D++++L
Sbjct: 315 LAQWDLRSPECPVGEFLINE-GTPINNVYFA-AGALFVSSGFDTSIKL 360
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%)
Query: 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101
I++ + + + + ++H E+ + LIS D Q+ W V G R GH
Sbjct: 121 IKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH 180
Query: 102 ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST 136
+ V + + V+SA D ++R W+C + +T
Sbjct: 181 RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT 215
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 58 SHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNE--Y 113
SH + D + ++L +C DR + +DV G +I RGHE V V + Y
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 114 SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTV 168
+++ S YD+ + W + + E SV SVC + + GS DG +
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTYKSHGREVRDV---HVTAD 71
HE + A+ + G +C DR++++++ G I I + H V V H
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 72 NSKLISCGGDRQIFYWDVSTGRVIR--KFRGHESEVNAV 108
N L SC DR++ W G + + GH+S VN+V
Sbjct: 72 N-ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSV 109
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 14 LKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE 62
L+GHEG V + GN SC DR + +W G K+++ G +
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHD 103
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK- 74
H G V F DG + L+ G D +RLWN G + T ++G+ +NSK
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN--TLVNYGK-------VCNNSKK 293
Query: 75 ----LISCGGDRQIFY---------WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121
+SCG + + + V +G I +GH V+ F + S
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 122 YDQSLRAW 129
D ++ AW
Sbjct: 354 RDCNILAW 361
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 25/145 (17%)
Query: 88 DVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ 146
D+ +G +GH E+ AV ++ Y ++ +A D ++ WD R
Sbjct: 172 DLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR------------- 218
Query: 147 DSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS 206
S CL + G V + + + VN + ++DG +L D+
Sbjct: 219 ---ASGCLITLDQHNGKKSQAVESANTAHNGK--------VNGLCFTSDGLHLLTVGTDN 267
Query: 207 TLRLLDRSTGELLQEYKGHICKSFK 231
+RL + S GE G +C + K
Sbjct: 268 RMRLWNSSNGENTLVNYGKVCNNSK 292
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKF-RGHESEVNAVKFNEYSSVVVSAGYDQSL 126
V +N ++++ G D +I + +R S ++AV F ++ Q L
Sbjct: 156 VVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIGQ-L 214
Query: 127 RAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-----IIGGSVDGTVRTFDIRVG 176
+ WD R EP QI+ D V C+ + + G DG + +D+R G
Sbjct: 215 KIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQG 269
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKL 75
H+ V G +S KD I++W+ + + + +Y++H +V V + +S
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 76 ISCGGDRQIFYWD 88
+SC D +I WD
Sbjct: 186 LSCSEDNRILLWD 198
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVV 117
H V V V + ++ +S D I WD++ V+ +R H ++V V + + SV
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 118 VSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT----KTEI-IGGSVDGTVRTFD 172
+S D + WD R +P I + L ++E+ + G +GTV D
Sbjct: 186 LSCSEDNRILLWDTR--CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVD 243
Query: 173 IR-VGRELSDDL-GQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQ 220
+ LS + Q V + S LAS D +L +LD S EL +
Sbjct: 244 TKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 15/139 (10%)
Query: 8 RTEANV--LKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWN-PHRGI------HIKTYK 57
R + NV + GH VL + + ++ G +D T+ +W P G+ + T +
Sbjct: 69 RVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 58 SHGREVRDV--HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG--HESEVNAVKFNEY 113
H + V V H TA N L+S G D I WDV TG + H + +V ++
Sbjct: 129 GHTKRVGIVAWHPTAQNV-LLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 114 SSVVVSAGYDQSLRAWDCR 132
+++ ++ D+ +R + R
Sbjct: 188 GALICTSCRDKRVRVIEPR 206
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 47/179 (26%)
Query: 52 HIKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVSTGRVIRKFR-------GHES 103
++ H V D+ N +I+ G D + W++ G ++ R GH
Sbjct: 73 NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 104 EVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162
V V ++ + +V++SAG D + WD + G
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGT---------------------------GA 165
Query: 163 SVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE 221
+V + +G ++ D + + S DG I SC D +R+++ G ++ E
Sbjct: 166 AV--------LTLGPDVHPDT---IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 15 KGHEGAVLAARF-NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS 73
+GH+ +L+ + + D + LS G+D T+ LWNP + + + G +
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAP 318
Query: 74 KLISCG 79
L +C
Sbjct: 319 DLFACA 324
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 52 HIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYW----DVSTGRVIRKFRGHESEVN 106
H++ + S H V DV + +C D+ I + D S + +R H+S +
Sbjct: 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV 61
Query: 107 AVKF--NEYSSVVVSAGYDQSLRAWD 130
A+ + EY ++ SA YD++++ W+
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 8 RTEANV--LKGHEGAVL-AARFNGDGNYCLSCGKDRTIRLWN-PHRGI------HIKTYK 57
R + NV + GH VL A + N S +D T+ +W P G+ + T +
Sbjct: 69 RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE 128
Query: 58 SHGREVRDV--HVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG--HESEVNAVKFNEY 113
H + V V H TA N L+S G D I WDV TG + H + +V ++
Sbjct: 129 GHTKRVGIVAWHPTAQNV-LLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD 187
Query: 114 SSVVVSAGYDQSLRAWDCR 132
+++ ++ D+ +R + R
Sbjct: 188 GALICTSCRDKRVRVIEPR 206
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 47/172 (27%)
Query: 59 HGREVRDVHVTADNSKLISCGG-DRQIFYWDVSTGRVIRKFR-------GHESEVNAVKF 110
H V D+ N +I+ G D + W++ G ++ R GH V V +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 111 NEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR 169
+ + +V++SAG D + WD + G +V
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGT---------------------------GAAV----- 167
Query: 170 TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE 221
+ +G ++ D + + S DG I SC D +R+++ G ++ E
Sbjct: 168 ---LTLGPDVHPDT---IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 24/166 (14%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83
+N D C + + ++ ++ + + K H +V V D++++++CG DR
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 75
Query: 84 IFYWDVS---------TGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRS 133
+ W + R+ R R N KF S S V+S Y + W
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 134 HSTEPIQ----IIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175
H +PI+ +D +SV+ + GS D R F +
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVL--------LAAGSCDFKCRIFSAYI 173
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH------GREVRDVH 67
LK H G V + D N ++CG DR +W + +T+K R R V
Sbjct: 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT----LKGRTWKPTLVILRINRAARCVR 103
Query: 68 VTADNSKLISCGGDRQI 84
+ K G R I
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 64/166 (38%), Gaps = 24/166 (14%)
Query: 26 FNGDGNYCLSCGKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83
+N D C + + ++ ++ + + K H +V + D++++++CG DR
Sbjct: 16 WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRN 75
Query: 84 IFYWDVS---------TGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRS 133
+ W + R+ R R N KF S S V+S Y + W
Sbjct: 76 AYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK 135
Query: 134 HSTEPIQ----IIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175
H +PI+ +D +SV+ + GS D R F +
Sbjct: 136 HIKKPIRSTVLSLDWHPNSVL--------LAAGSCDFKCRIFSAYI 173
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH------GREVRDVH 67
LK H G V + D N ++CG DR +W + +T+K R R V
Sbjct: 48 LKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWT----LKGRTWKPTLVILRINRAARCVR 103
Query: 68 VTADNSKLISCGGDRQI 84
+ K G R I
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 52 HIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYW----DVSTGRVIRKFRGHESEVN 106
H + + S H V DV + +C D+ I + D S + +R H+S +
Sbjct: 2 HXQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV 61
Query: 107 AVKF--NEYSSVVVSAGYDQSLRAWD 130
A+ + EY ++ SA YD++++ W+
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 18/86 (20%)
Query: 51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW----DVSTGRVIRKFRGHESEVN 106
+H Y +GR V +C D+ I + D S + +R H+S +
Sbjct: 12 VHDVVYDFYGRHV------------ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV 59
Query: 107 AVKF--NEYSSVVVSAGYDQSLRAWD 130
A+ + EY ++ SA YD++++ W+
Sbjct: 60 AIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHIKTYKSHG 60
V D +T + H G VL ++ DG+ + D+T ++W+ ++ I I H
Sbjct: 71 VQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI---AQHD 127
Query: 61 REVRDVH-VTADNSKLISCGG-DRQIFYWDVSTGRVI 95
V+ +H + A N + G D+ + +WD + +
Sbjct: 128 APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 24/134 (17%)
Query: 139 IQIIDSFQDSVMSVCLTKTEI-----IGGSVDGTVRTFDIRVGRELSDDLGQ----PVNC 189
I++ S DS+ + + + I GS VR ++++ + Q PV
Sbjct: 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLD 91
Query: 190 ISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-------HICKSFKTDCCLTNSDAH 242
+ S+DG+ + + D T ++ D S+ + +Q + H K+ C +T
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMT----- 146
Query: 243 VTGGSEDGYIYFWD 256
GS D + FWD
Sbjct: 147 ---GSWDKTLKFWD 157
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 47/206 (22%)
Query: 54 KTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE 112
+T+ G VRDV + D+ + I+ G DR+I +D +G ++ + V F
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 113 Y---SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR 169
S + G D ++R WD + +D Q +G G V
Sbjct: 260 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ-------------LGNQQVGVVA 306
Query: 170 TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS 229
T + R+ IS+S LD TL + E+L+ GH
Sbjct: 307 TGNGRI--------------ISLS----------LDGTLNFYELGHDEVLKTISGH---- 338
Query: 230 FKTDCCLTNSDAHVTGGSEDGYIYFW 255
K LT + + GS DG I W
Sbjct: 339 NKGITALTVNP--LISGSYDGRIMEW 362
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----DNSKLISCGGDRQIF 85
G + ++ G DR I ++ G +K Y +E + A D+ K + G D I
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 86 YWDVSTGRVIRKF 98
WDV+T + ++K+
Sbjct: 278 VWDVTTSKCVQKW 290
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 75/206 (36%), Gaps = 47/206 (22%)
Query: 54 KTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE 112
+T+ G VRDV + D+ + I+ G DR+I +D +G ++ + V F
Sbjct: 200 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 259
Query: 113 Y---SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR 169
S + G D ++R WD + +D Q +G G V
Sbjct: 260 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ-------------LGNQQVGVVA 306
Query: 170 TFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS 229
T + R+ IS+S LD TL + E+L+ GH
Sbjct: 307 TGNGRI--------------ISLS----------LDGTLNFYELGHDEVLKTISGH---- 338
Query: 230 FKTDCCLTNSDAHVTGGSEDGYIYFW 255
K LT + + GS DG I W
Sbjct: 339 NKGITALTVNP--LISGSYDGRIXEW 362
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA----DNSKLISCGGDRQIF 85
G + ++ G DR I ++ G +K Y +E + A D+ K + G D I
Sbjct: 219 GEFVITVGSDRKISCFDGKSGEFLK-YIEDDQEPVQGGIFALSWLDSQKFATVGADATIR 277
Query: 86 YWDVSTGRVIRKF 98
WDV+T + ++K+
Sbjct: 278 VWDVTTSKCVQKW 290
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133
H S V ++ FN+ + SAG+D LR WD ++
Sbjct: 299 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 332
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133
H S V ++ FN+ + SAG+D LR WD ++
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 75 LISCGGDRQIFYWDVSTGRVIRKF 98
L+S GGD +IF WD TG+ + F
Sbjct: 255 LLSAGGDDKIFAWDWKTGKNLSTF 278
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 63 VRDVHVTADNSKLISCG-GDRQIFYWDV-STGRVIRKFRGH---ESEVNAVKFNEYSSVV 117
+R++ +T+D S+LI+C D+ + +DV T + + K R NA+ E + V
Sbjct: 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV 164
Query: 118 VSAG-----YDQSLRAWDCRSHSTEPI 139
+ A Y + + + EPI
Sbjct: 165 IIADKFGDVYSIDINSIPEEKFTQEPI 191
>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
Muramidase/transglycosylase Using Warp
Length = 320
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 247 SEDGYIYFWDLVDA--SVVAKFKAHSLV 272
S DG+I WD VDA SV FKAH V
Sbjct: 198 SGDGHINLWDPVDAIGSVANYFKAHGWV 225
>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
Transglycosylase Slt35 From Escherichia Coli
pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
Coli In Complex With N-Acetylglucosamine
pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycosylase Slt35
pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
Transglycoyslase Slt35 In Complex With Calcium
pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Two Murodipeptides
(Glcnac-Murnac-L-Ala-D-Glu)
pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A
pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
Complex With Bulgecin A And (Glcnac)2
Length = 322
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 247 SEDGYIYFWDLVDA--SVVAKFKAHSLV 272
S DG+I WD VDA SV FKAH V
Sbjct: 200 SGDGHINLWDPVDAIGSVANYFKAHGWV 227
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRT-IRLWNPHRGIHIKTYKS--HGREVRDVHVT 69
++K H V R N G+ +C +D T IR++ G+ ++ ++ + D+ +
Sbjct: 174 LVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWS 233
Query: 70 ADNSKL 75
D SKL
Sbjct: 234 PDGSKL 239
>pdb|1W91|A Chain A, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|B Chain B, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|C Chain C, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|D Chain D, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|E Chain E, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|F Chain F, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|G Chain G, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
pdb|1W91|H Chain H, Crystal Structure Of 1,4-Beta-D-Xylan Xylohydrolase Solve
Using Anomalous Signal From Seleniomethionine
Length = 503
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 47 PHRGIHIKTYKSHGREVRDVHVTADN----SKLISCGGDR--QIFYWDVS 90
PH +HI Y + + VH TA N ++++S GGD YW S
Sbjct: 270 PHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFS 319
>pdb|2BFG|A Chain A, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|B Chain B, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|C Chain C, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|D Chain D, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|E Chain E, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|F Chain F, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|G Chain G, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
pdb|2BFG|H Chain H, Crystal Structure Of Beta-Xylosidase (Fam Gh39) In Complex
With Dinitrophenyl-Beta-Xyloside And Covalently Bound
Xyloside
Length = 503
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 47 PHRGIHIKTYKSHGREVRDVHVTADN----SKLISCGGDR--QIFYWDVS 90
PH +HI Y + + VH TA N ++++S GGD YW S
Sbjct: 270 PHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFS 319
>pdb|2BS9|A Chain A, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|B Chain B, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|C Chain C, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|D Chain D, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|E Chain E, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|F Chain F, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|G Chain G, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
pdb|2BS9|H Chain H, Native Crystal Structure Of A Gh39 Beta-Xylosidase Xynb1
From Geobacillus Stearothermophilus
Length = 503
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 47 PHRGIHIKTYKSHGREVRDVHVTADN----SKLISCGGDR--QIFYWDVS 90
PH +HI Y + + VH TA N ++++S GGD YW S
Sbjct: 270 PHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFS 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,487,468
Number of Sequences: 62578
Number of extensions: 349351
Number of successful extensions: 1629
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 386
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)