Query 023772
Match_columns 277
No_of_seqs 193 out of 1565
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0316 Conserved WD40 repeat- 100.0 6.4E-58 1.4E-62 335.1 25.0 269 5-273 4-272 (307)
2 KOG0271 Notchless-like WD40 re 100.0 2.6E-49 5.5E-54 307.9 25.0 260 12-275 109-456 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-46 6.3E-51 293.9 20.2 256 15-274 172-434 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 8.4E-45 1.8E-49 285.7 17.8 244 9-256 208-458 (459)
5 KOG0286 G-protein beta subunit 100.0 2.2E-42 4.7E-47 260.7 29.3 263 11-276 48-321 (343)
6 KOG0271 Notchless-like WD40 re 100.0 5.3E-43 1.1E-47 272.8 22.8 246 8-256 147-479 (480)
7 KOG0279 G protein beta subunit 100.0 1.9E-41 4.1E-46 254.1 26.5 253 11-268 8-272 (315)
8 KOG0293 WD40 repeat-containing 100.0 1.1E-41 2.3E-46 267.8 22.6 270 5-276 211-488 (519)
9 KOG0265 U5 snRNP-specific prot 100.0 6.9E-41 1.5E-45 253.4 24.1 263 11-276 40-314 (338)
10 KOG0279 G protein beta subunit 100.0 3.4E-40 7.4E-45 247.3 25.4 244 11-258 56-313 (315)
11 KOG0266 WD40 repeat-containing 100.0 8.1E-40 1.7E-44 279.1 30.6 260 13-274 153-426 (456)
12 KOG0295 WD40 repeat-containing 100.0 1.4E-40 3.1E-45 257.5 22.7 266 7-276 96-382 (406)
13 KOG0285 Pleiotropic regulator 100.0 1.7E-40 3.6E-45 256.9 20.9 252 9-266 142-397 (460)
14 KOG0315 G-protein beta subunit 100.0 5.6E-39 1.2E-43 237.4 25.9 237 31-273 11-261 (311)
15 KOG0282 mRNA splicing factor [ 100.0 4.6E-41 9.9E-46 268.7 15.3 268 5-275 201-479 (503)
16 KOG0315 G-protein beta subunit 100.0 1.5E-38 3.2E-43 235.2 26.8 254 14-272 36-302 (311)
17 KOG0263 Transcription initiati 100.0 1.8E-39 3.9E-44 273.2 23.4 243 15-261 375-652 (707)
18 KOG0286 G-protein beta subunit 100.0 2.9E-37 6.3E-42 233.1 26.6 235 17-256 96-343 (343)
19 KOG1446 Histone H3 (Lys4) meth 100.0 2.4E-36 5.1E-41 230.5 30.7 262 12-275 8-280 (311)
20 KOG0295 WD40 repeat-containing 100.0 4.9E-38 1.1E-42 243.5 19.7 243 11-257 143-405 (406)
21 KOG0273 Beta-transducin family 100.0 1.8E-36 3.8E-41 241.9 26.2 246 7-258 265-523 (524)
22 KOG0318 WD40 repeat stress pro 100.0 1.4E-35 3.1E-40 239.7 31.3 263 11-275 183-578 (603)
23 KOG0273 Beta-transducin family 100.0 3.4E-36 7.4E-41 240.2 27.0 247 19-271 236-495 (524)
24 KOG0276 Vesicle coat complex C 100.0 4.7E-37 1E-41 252.8 22.8 252 13-267 8-266 (794)
25 KOG0284 Polyadenylation factor 100.0 3.4E-38 7.4E-43 247.6 15.1 253 17-273 95-353 (464)
26 cd00200 WD40 WD40 domain, foun 100.0 4E-35 8.7E-40 235.8 32.7 261 12-276 3-267 (289)
27 KOG0263 Transcription initiati 100.0 3E-37 6.6E-42 259.9 20.7 203 11-215 444-650 (707)
28 KOG0266 WD40 repeat-containing 100.0 4.1E-36 8.9E-41 256.4 26.7 247 11-258 196-454 (456)
29 KOG0291 WD40-repeat-containing 100.0 9.1E-36 2E-40 249.8 27.6 253 13-267 345-621 (893)
30 KOG0281 Beta-TrCP (transducin 100.0 6.3E-38 1.4E-42 242.1 12.7 233 16-260 195-430 (499)
31 KOG0288 WD40 repeat protein Ti 100.0 1.9E-37 4.1E-42 243.8 14.9 268 5-275 162-436 (459)
32 KOG0291 WD40-repeat-containing 100.0 3.2E-35 7E-40 246.5 27.3 263 3-268 291-560 (893)
33 KOG0313 Microtubule binding pr 100.0 1.5E-35 3.3E-40 230.8 23.6 266 4-274 91-393 (423)
34 KOG0643 Translation initiation 100.0 8.6E-35 1.9E-39 217.3 26.5 248 12-260 4-319 (327)
35 KOG0283 WD40 repeat-containing 100.0 5.9E-36 1.3E-40 253.9 21.3 241 16-261 265-579 (712)
36 KOG0281 Beta-TrCP (transducin 100.0 9.2E-37 2E-41 235.7 14.5 238 11-262 230-481 (499)
37 KOG0284 Polyadenylation factor 100.0 2.8E-36 6.1E-41 236.9 15.3 243 12-259 132-381 (464)
38 KOG0319 WD40-repeat-containing 100.0 2.5E-35 5.4E-40 246.6 19.9 252 4-259 351-620 (775)
39 PLN00181 protein SPA1-RELATED; 100.0 5.7E-33 1.2E-37 252.9 34.1 243 14-263 479-743 (793)
40 KOG0274 Cdc4 and related F-box 100.0 9.5E-34 2.1E-38 242.0 27.1 249 9-269 239-493 (537)
41 KOG0296 Angio-associated migra 100.0 1.4E-33 3.1E-38 218.9 25.1 246 10-258 98-398 (399)
42 KOG0265 U5 snRNP-specific prot 100.0 7.2E-34 1.6E-38 215.4 22.4 241 11-256 83-336 (338)
43 KOG0296 Angio-associated migra 100.0 1.5E-33 3.2E-38 218.8 24.2 260 10-275 56-373 (399)
44 KOG0274 Cdc4 and related F-box 100.0 1.3E-33 2.9E-38 241.1 26.2 255 11-276 200-460 (537)
45 KOG0278 Serine/threonine kinas 100.0 6.9E-35 1.5E-39 216.0 15.0 262 9-276 5-273 (334)
46 KOG0285 Pleiotropic regulator 100.0 2.4E-34 5.3E-39 222.9 18.6 221 51-276 142-366 (460)
47 KOG0319 WD40-repeat-containing 100.0 5.6E-34 1.2E-38 238.5 21.8 259 13-274 318-593 (775)
48 KOG0277 Peroxisomal targeting 100.0 2.5E-34 5.4E-39 213.4 17.0 238 17-257 59-308 (311)
49 KOG0645 WD40 repeat protein [G 100.0 2.3E-32 5E-37 204.6 27.6 240 11-259 7-262 (312)
50 KOG0292 Vesicle coat complex C 100.0 4E-33 8.7E-38 237.7 25.3 246 14-262 47-325 (1202)
51 cd00200 WD40 WD40 domain, foun 100.0 8.9E-32 1.9E-36 216.3 31.9 242 11-256 44-289 (289)
52 KOG0294 WD40 repeat-containing 100.0 1.4E-32 3.1E-37 209.7 25.4 243 13-260 38-283 (362)
53 KOG0292 Vesicle coat complex C 100.0 7.8E-34 1.7E-38 242.0 19.6 248 16-267 7-289 (1202)
54 PLN00181 protein SPA1-RELATED; 100.0 9.6E-32 2.1E-36 244.9 34.3 239 17-257 531-792 (793)
55 KOG0645 WD40 repeat protein [G 100.0 5.2E-32 1.1E-36 202.7 26.4 238 15-258 58-311 (312)
56 KOG0278 Serine/threonine kinas 100.0 2.3E-34 5E-39 213.3 13.1 247 11-263 52-302 (334)
57 KOG0276 Vesicle coat complex C 100.0 1.1E-32 2.5E-37 227.1 23.4 235 15-253 52-294 (794)
58 PTZ00421 coronin; Provisional 100.0 2E-31 4.4E-36 227.3 31.2 249 17-268 19-300 (493)
59 KOG0640 mRNA cleavage stimulat 100.0 9.9E-33 2.1E-37 210.5 20.1 271 6-276 100-402 (430)
60 PTZ00421 coronin; Provisional 100.0 2.8E-31 6.1E-36 226.4 31.3 210 12-223 69-299 (493)
61 KOG0275 Conserved WD40 repeat- 100.0 7.2E-33 1.6E-37 212.6 18.5 254 15-271 210-480 (508)
62 KOG0282 mRNA splicing factor [ 100.0 2.8E-33 6.1E-38 224.3 16.8 244 10-256 250-503 (503)
63 KOG0318 WD40 repeat stress pro 100.0 1.3E-30 2.8E-35 211.1 27.2 260 11-276 52-326 (603)
64 KOG0306 WD40-repeat-containing 100.0 2.1E-31 4.5E-36 223.7 23.2 259 13-276 368-640 (888)
65 KOG0275 Conserved WD40 repeat- 100.0 1.2E-32 2.5E-37 211.5 13.8 243 11-256 256-507 (508)
66 KOG0299 U3 snoRNP-associated p 100.0 5.6E-31 1.2E-35 210.0 23.4 247 11-260 135-412 (479)
67 KOG0772 Uncharacterized conser 100.0 2.3E-31 4.9E-36 215.1 20.8 263 6-269 155-456 (641)
68 KOG0313 Microtubule binding pr 100.0 5.3E-31 1.1E-35 205.6 21.8 245 7-258 133-418 (423)
69 KOG1407 WD40 repeat protein [F 100.0 8.1E-31 1.8E-35 195.4 21.6 258 5-268 7-271 (313)
70 KOG0647 mRNA export protein (c 100.0 2.4E-30 5.2E-35 196.6 24.3 258 14-275 23-298 (347)
71 KOG0293 WD40 repeat-containing 100.0 4.6E-31 1E-35 208.1 20.6 243 11-259 262-514 (519)
72 KOG0305 Anaphase promoting com 100.0 2E-30 4.4E-35 214.7 24.9 241 15-261 214-464 (484)
73 PTZ00420 coronin; Provisional 100.0 2.4E-29 5.2E-34 215.9 32.3 223 36-261 50-296 (568)
74 KOG0316 Conserved WD40 repeat- 100.0 6.1E-31 1.3E-35 193.5 18.8 213 51-271 8-226 (307)
75 KOG0268 Sof1-like rRNA process 100.0 1.1E-31 2.3E-36 208.5 14.8 247 11-263 59-350 (433)
76 KOG0308 Conserved WD40 repeat- 100.0 2.7E-31 5.8E-36 219.8 17.2 242 16-259 19-286 (735)
77 KOG0288 WD40 repeat protein Ti 100.0 3.1E-31 6.6E-36 208.9 15.8 239 11-255 212-458 (459)
78 KOG0310 Conserved WD40 repeat- 100.0 8.2E-30 1.8E-34 204.7 23.4 237 14-256 64-307 (487)
79 PTZ00420 coronin; Provisional 100.0 8.8E-29 1.9E-33 212.4 30.3 204 11-217 67-296 (568)
80 KOG0640 mRNA cleavage stimulat 100.0 1.5E-30 3.2E-35 198.7 16.7 216 53-268 105-345 (430)
81 KOG1036 Mitotic spindle checkp 100.0 2E-28 4.3E-33 186.6 26.4 249 17-271 12-275 (323)
82 KOG0289 mRNA splicing factor [ 100.0 5E-29 1.1E-33 197.7 23.6 245 9-257 252-505 (506)
83 KOG0310 Conserved WD40 repeat- 100.0 1.5E-29 3.4E-34 203.1 20.1 250 18-274 26-284 (487)
84 KOG0300 WD40 repeat-containing 100.0 4.5E-29 9.8E-34 191.3 20.7 246 12-260 142-478 (481)
85 KOG0646 WD40 repeat protein [G 100.0 8.4E-29 1.8E-33 197.9 21.7 245 32-276 52-325 (476)
86 KOG0289 mRNA splicing factor [ 100.0 2.1E-28 4.5E-33 194.2 23.2 253 19-272 220-478 (506)
87 KOG0301 Phospholipase A2-activ 100.0 2.1E-28 4.7E-33 204.0 22.6 245 11-267 7-256 (745)
88 KOG0306 WD40-repeat-containing 100.0 5.1E-28 1.1E-32 203.4 23.9 238 19-260 413-666 (888)
89 KOG0299 U3 snoRNP-associated p 100.0 3E-28 6.4E-33 194.5 21.0 226 15-246 199-443 (479)
90 KOG0277 Peroxisomal targeting 100.0 1.3E-28 2.9E-33 183.0 16.5 207 6-213 92-308 (311)
91 KOG1332 Vesicle coat complex C 100.0 4.9E-28 1.1E-32 179.1 18.0 240 14-258 7-286 (299)
92 KOG0641 WD40 repeat protein [G 100.0 5.3E-26 1.2E-30 166.9 27.6 241 14-258 28-303 (350)
93 KOG1273 WD40 repeat protein [G 100.0 2E-27 4.2E-32 181.9 19.3 247 21-270 26-292 (405)
94 KOG0264 Nucleosome remodeling 100.0 2.6E-27 5.7E-32 188.8 20.7 244 15-260 121-406 (422)
95 KOG0641 WD40 repeat protein [G 100.0 6.6E-26 1.4E-30 166.4 25.7 242 14-258 85-349 (350)
96 KOG0301 Phospholipase A2-activ 100.0 4.8E-27 1E-31 196.0 21.8 233 13-259 52-289 (745)
97 KOG2096 WD40 repeat protein [G 100.0 2.8E-26 6.1E-31 175.9 23.7 242 11-256 79-400 (420)
98 KOG0267 Microtubule severing p 100.0 5.9E-29 1.3E-33 208.2 9.5 222 12-275 22-243 (825)
99 KOG0321 WD40 repeat-containing 100.0 1E-26 2.2E-31 192.5 21.0 255 22-276 53-366 (720)
100 KOG4283 Transcription-coupled 100.0 3.8E-26 8.2E-31 173.5 22.1 255 14-274 39-339 (397)
101 KOG0283 WD40 repeat-containing 100.0 8.6E-27 1.9E-31 198.4 20.8 203 9-214 360-576 (712)
102 KOG0973 Histone transcription 100.0 2.2E-26 4.8E-31 200.7 22.7 249 13-262 64-359 (942)
103 KOG1446 Histone H3 (Lys4) meth 100.0 3E-25 6.4E-30 170.0 26.0 246 9-260 47-305 (311)
104 KOG1408 WD40 repeat protein [F 99.9 5.1E-26 1.1E-30 190.8 21.1 261 14-276 365-689 (1080)
105 KOG0308 Conserved WD40 repeat- 99.9 7.6E-27 1.6E-31 193.6 15.2 205 70-276 35-261 (735)
106 KOG0305 Anaphase promoting com 99.9 3.1E-25 6.6E-30 184.1 24.1 245 24-276 183-437 (484)
107 KOG0973 Histone transcription 99.9 1.7E-25 3.7E-30 195.2 23.2 245 16-264 11-318 (942)
108 KOG0643 Translation initiation 99.9 4.2E-25 9.1E-30 165.6 21.9 210 55-269 5-231 (327)
109 KOG1274 WD40 repeat protein [G 99.9 1.1E-24 2.4E-29 187.1 27.5 241 15-259 10-263 (933)
110 KOG0647 mRNA export protein (c 99.9 4.2E-25 9.2E-30 168.1 21.7 228 13-246 67-311 (347)
111 KOG0642 Cell-cycle nuclear pro 99.9 3.5E-26 7.6E-31 186.9 16.4 255 12-271 288-574 (577)
112 KOG2445 Nuclear pore complex c 99.9 3.3E-24 7.2E-29 163.7 25.9 252 14-268 9-331 (361)
113 KOG1036 Mitotic spindle checkp 99.9 4.8E-25 1E-29 168.2 20.4 238 3-248 39-294 (323)
114 KOG0300 WD40 repeat-containing 99.9 8.6E-26 1.9E-30 173.4 16.4 217 51-270 139-399 (481)
115 KOG1407 WD40 repeat protein [F 99.9 2.4E-24 5.3E-29 161.0 23.7 231 12-249 58-293 (313)
116 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-23 5.9E-28 169.3 30.8 254 12-272 25-293 (300)
117 KOG0646 WD40 repeat protein [G 99.9 2.8E-25 6E-30 177.9 18.1 204 17-223 80-316 (476)
118 KOG1332 Vesicle coat complex C 99.9 2.7E-25 5.8E-30 164.7 15.8 207 8-214 46-286 (299)
119 KOG0650 WD40 repeat nucleolar 99.9 1E-24 2.3E-29 179.6 20.5 249 3-255 385-732 (733)
120 KOG0264 Nucleosome remodeling 99.9 6.6E-25 1.4E-29 175.2 18.7 202 12-214 171-404 (422)
121 KOG1408 WD40 repeat protein [F 99.9 4.7E-25 1E-29 185.1 18.7 241 16-259 457-714 (1080)
122 KOG0772 Uncharacterized conser 99.9 2.7E-24 5.8E-29 174.4 21.4 240 14-256 210-485 (641)
123 KOG0302 Ribosome Assembly prot 99.9 2.6E-24 5.7E-29 168.3 20.2 202 14-215 147-379 (440)
124 KOG0269 WD40 repeat-containing 99.9 1.4E-25 2.9E-30 189.5 13.6 234 22-258 91-340 (839)
125 KOG0639 Transducin-like enhanc 99.9 8.9E-25 1.9E-29 176.8 17.5 251 15-271 416-676 (705)
126 KOG0321 WD40 repeat-containing 99.9 3.3E-24 7.1E-29 177.8 19.9 248 12-260 94-393 (720)
127 KOG0268 Sof1-like rRNA process 99.9 2.6E-25 5.6E-30 173.1 12.4 207 53-263 59-307 (433)
128 KOG0267 Microtubule severing p 99.9 4E-26 8.7E-31 191.4 8.4 192 13-206 65-260 (825)
129 KOG0270 WD40 repeat-containing 99.9 4.7E-24 1E-28 170.0 18.5 231 29-263 191-454 (463)
130 KOG0639 Transducin-like enhanc 99.9 1.3E-24 2.9E-29 175.8 15.2 234 18-257 465-703 (705)
131 KOG1539 WD repeat protein [Gen 99.9 2.4E-23 5.2E-28 177.3 23.5 259 13-273 239-621 (910)
132 KOG4328 WD40 protein [Function 99.9 2.1E-23 4.5E-28 166.9 21.6 258 10-269 178-461 (498)
133 KOG0269 WD40 repeat-containing 99.9 4.5E-24 9.7E-29 180.4 17.5 254 19-276 40-315 (839)
134 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-23 3.4E-28 169.4 19.5 253 20-276 36-299 (673)
135 KOG2048 WD40 repeat protein [G 99.9 4.3E-22 9.2E-27 166.3 27.6 242 15-260 22-277 (691)
136 KOG2106 Uncharacterized conser 99.9 4.3E-22 9.2E-27 161.4 25.7 233 19-259 247-522 (626)
137 KOG1539 WD repeat protein [Gen 99.9 1.3E-22 2.9E-27 172.8 22.3 242 14-259 330-649 (910)
138 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-21 6E-26 157.4 29.4 233 30-267 1-246 (300)
139 KOG0294 WD40 repeat-containing 99.9 2E-22 4.4E-27 154.5 20.4 214 52-274 35-253 (362)
140 KOG1034 Transcriptional repres 99.9 3.5E-23 7.7E-28 159.4 15.6 243 17-259 88-384 (385)
141 KOG2106 Uncharacterized conser 99.9 6.2E-21 1.3E-25 154.7 28.1 254 15-276 197-497 (626)
142 KOG4283 Transcription-coupled 99.9 8.6E-22 1.9E-26 150.0 20.7 241 15-258 98-365 (397)
143 KOG0644 Uncharacterized conser 99.9 1.9E-23 4.1E-28 178.1 11.8 250 13-268 185-478 (1113)
144 KOG2055 WD40 repeat protein [G 99.9 1.6E-21 3.5E-26 156.3 21.7 241 18-258 213-512 (514)
145 KOG2919 Guanine nucleotide-bin 99.9 2.8E-21 6E-26 148.9 21.5 252 22-274 53-344 (406)
146 KOG0303 Actin-binding protein 99.9 1.3E-21 2.8E-26 154.2 18.6 205 12-217 75-297 (472)
147 KOG0270 WD40 repeat-containing 99.9 3.9E-22 8.5E-27 159.1 15.7 203 15-219 240-454 (463)
148 KOG1063 RNA polymerase II elon 99.9 2.3E-20 5E-25 156.4 23.1 260 13-274 262-668 (764)
149 KOG1334 WD40 repeat protein [G 99.9 1.9E-21 4.2E-26 157.0 15.3 265 12-276 136-442 (559)
150 KOG0302 Ribosome Assembly prot 99.9 4E-21 8.6E-26 150.7 15.8 196 10-206 203-431 (440)
151 KOG2096 WD40 repeat protein [G 99.9 2.8E-20 6E-25 143.2 20.0 202 12-215 181-403 (420)
152 KOG2048 WD40 repeat protein [G 99.9 1.7E-19 3.6E-24 151.0 26.2 243 12-259 62-320 (691)
153 KOG0307 Vesicle coat complex C 99.9 7.9E-22 1.7E-26 173.4 12.9 244 23-268 11-294 (1049)
154 KOG1273 WD40 repeat protein [G 99.9 8.2E-20 1.8E-24 140.4 22.3 245 9-259 56-323 (405)
155 KOG1274 WD40 repeat protein [G 99.9 4.8E-20 1E-24 158.9 23.2 197 17-215 55-263 (933)
156 KOG0307 Vesicle coat complex C 99.9 1.1E-21 2.3E-26 172.6 13.3 238 20-261 66-330 (1049)
157 KOG4227 WD40 repeat protein [G 99.9 3.4E-20 7.3E-25 146.5 20.2 245 13-259 51-323 (609)
158 COG2319 FOG: WD40 repeat [Gene 99.9 2.1E-18 4.5E-23 145.9 32.9 256 13-273 60-331 (466)
159 KOG4378 Nuclear protein COP1 [ 99.9 6.1E-21 1.3E-25 154.5 16.0 212 22-234 83-301 (673)
160 KOG4328 WD40 protein [Function 99.9 1.1E-20 2.5E-25 151.3 17.2 247 12-258 228-495 (498)
161 KOG2445 Nuclear pore complex c 99.9 4.8E-19 1E-23 135.7 22.9 200 57-259 10-257 (361)
162 KOG1034 Transcriptional repres 99.9 1.4E-20 3.1E-25 145.2 13.4 203 10-214 127-383 (385)
163 KOG1538 Uncharacterized conser 99.9 5.6E-19 1.2E-23 148.1 23.2 236 20-260 14-295 (1081)
164 KOG0322 G-protein beta subunit 99.8 4.4E-20 9.4E-25 138.6 14.1 248 6-257 2-322 (323)
165 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-17 2.9E-22 140.9 31.4 253 11-267 101-368 (466)
166 KOG1310 WD40 repeat protein [G 99.8 5.6E-20 1.2E-24 150.7 14.9 213 11-223 43-312 (758)
167 KOG1063 RNA polymerase II elon 99.8 1.2E-19 2.5E-24 152.3 17.0 203 12-214 519-763 (764)
168 KOG2055 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 141.1 20.1 199 60-259 213-418 (514)
169 KOG1188 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 135.0 18.4 186 31-216 41-244 (376)
170 KOG0649 WD40 repeat protein [G 99.8 2.1E-17 4.6E-22 123.0 22.0 232 14-255 58-313 (325)
171 KOG1009 Chromatin assembly com 99.8 1.7E-18 3.7E-23 137.1 16.7 121 11-131 58-194 (434)
172 KOG1009 Chromatin assembly com 99.8 5.8E-18 1.3E-22 134.2 18.0 137 18-156 13-175 (434)
173 KOG0303 Actin-binding protein 99.8 4.1E-18 9E-23 134.6 16.9 201 55-261 76-297 (472)
174 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-18 2.6E-23 143.2 13.9 210 11-225 337-572 (577)
175 KOG0771 Prolactin regulatory e 99.8 2.6E-18 5.6E-23 136.7 13.7 193 22-215 148-355 (398)
176 KOG1188 WD40 repeat protein [G 99.8 2.3E-17 4.9E-22 128.2 17.3 195 73-269 41-253 (376)
177 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.6E-22 126.5 16.2 196 16-215 94-319 (364)
178 KOG1587 Cytoplasmic dynein int 99.8 1.6E-16 3.4E-21 136.0 22.6 240 17-259 241-517 (555)
179 KOG0644 Uncharacterized conser 99.8 7E-19 1.5E-23 150.6 7.3 214 54-273 184-442 (1113)
180 KOG1517 Guanine nucleotide bin 99.8 7.8E-17 1.7E-21 141.4 19.6 240 19-261 1110-1384(1387)
181 PRK01742 tolB translocation pr 99.8 1.6E-16 3.4E-21 135.7 20.6 220 10-238 195-425 (429)
182 KOG2110 Uncharacterized conser 99.8 2.2E-15 4.8E-20 118.4 25.0 237 18-261 5-251 (391)
183 KOG1240 Protein kinase contain 99.8 6.3E-16 1.4E-20 137.6 24.3 252 12-263 1042-1339(1431)
184 KOG1524 WD40 repeat-containing 99.7 2.7E-17 5.9E-22 134.8 13.7 185 12-210 98-282 (737)
185 PRK01742 tolB translocation pr 99.7 4.1E-16 8.8E-21 133.1 21.7 222 39-274 183-419 (429)
186 PRK11028 6-phosphogluconolacto 99.7 7.9E-15 1.7E-19 121.3 27.9 239 17-258 33-304 (330)
187 KOG1007 WD repeat protein TSSC 99.7 5.5E-16 1.2E-20 118.2 19.0 243 12-259 57-362 (370)
188 KOG1517 Guanine nucleotide bin 99.7 8.5E-16 1.8E-20 135.0 22.1 252 15-269 1061-1343(1387)
189 KOG1445 Tumor-specific antigen 99.7 4.3E-17 9.4E-22 136.2 13.3 199 17-216 626-846 (1012)
190 KOG1963 WD40 repeat protein [G 99.7 1.5E-15 3.3E-20 131.0 23.0 117 15-132 202-322 (792)
191 PRK11028 6-phosphogluconolacto 99.7 1.7E-14 3.6E-19 119.4 28.6 223 35-260 7-260 (330)
192 KOG0649 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 113.6 19.5 202 62-267 12-244 (325)
193 KOG2919 Guanine nucleotide-bin 99.7 2.9E-16 6.3E-21 121.5 16.3 224 19-248 105-360 (406)
194 KOG1963 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 128.9 23.4 245 22-267 20-384 (792)
195 KOG1007 WD repeat protein TSSC 99.7 1.2E-15 2.5E-20 116.5 17.7 196 16-214 121-361 (370)
196 KOG1310 WD40 repeat protein [G 99.7 3.2E-16 7E-21 129.0 15.5 214 53-266 43-311 (758)
197 KOG1445 Tumor-specific antigen 99.7 3E-16 6.5E-21 131.2 14.9 205 11-216 72-295 (1012)
198 KOG0650 WD40 repeat nucleolar 99.7 1.8E-15 3.9E-20 125.7 18.7 221 51-275 391-655 (733)
199 KOG1523 Actin-related protein 99.7 1.4E-14 3E-19 112.0 21.7 203 15-217 7-239 (361)
200 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3.1E-20 121.3 16.2 194 64-259 148-355 (398)
201 KOG1354 Serine/threonine prote 99.7 4.4E-15 9.5E-20 115.9 18.1 241 19-262 26-363 (433)
202 KOG2111 Uncharacterized conser 99.7 4.9E-14 1.1E-18 109.0 23.4 234 20-261 7-259 (346)
203 KOG1538 Uncharacterized conser 99.7 9.7E-15 2.1E-19 123.0 19.8 204 9-214 44-293 (1081)
204 KOG1240 Protein kinase contain 99.7 1.7E-14 3.6E-19 128.7 21.4 224 45-269 1034-1284(1431)
205 KOG0290 Conserved WD40 repeat- 99.7 9.3E-15 2E-19 111.7 16.8 194 15-210 147-361 (364)
206 KOG1523 Actin-related protein 99.7 1.7E-14 3.7E-19 111.6 18.3 204 56-261 6-239 (361)
207 KOG1524 WD40 repeat-containing 99.7 5.6E-15 1.2E-19 121.5 16.6 206 30-255 75-283 (737)
208 KOG2321 WD40 repeat protein [G 99.7 3.5E-14 7.6E-19 117.7 20.1 240 16-259 49-344 (703)
209 KOG0322 G-protein beta subunit 99.6 5.3E-15 1.1E-19 111.5 13.5 221 52-276 6-299 (323)
210 KOG4227 WD40 repeat protein [G 99.6 5.7E-14 1.2E-18 111.6 19.2 252 4-258 91-387 (609)
211 PRK03629 tolB translocation pr 99.6 2.2E-13 4.8E-18 116.2 23.9 213 10-226 190-417 (429)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 1.9E-15 4.2E-20 124.0 9.2 119 16-134 288-454 (636)
213 PRK05137 tolB translocation pr 99.6 5E-13 1.1E-17 114.6 24.5 205 9-218 192-416 (435)
214 KOG2110 Uncharacterized conser 99.6 1.4E-13 3.1E-18 108.4 19.0 119 16-134 127-250 (391)
215 KOG1272 WD40-repeat-containing 99.6 5.8E-15 1.2E-19 119.3 11.4 223 22-248 133-399 (545)
216 KOG3881 Uncharacterized conser 99.6 1.5E-13 3.3E-18 109.0 18.9 243 18-267 55-329 (412)
217 PRK04922 tolB translocation pr 99.6 4.2E-13 9.2E-18 114.9 23.1 211 9-223 194-419 (433)
218 KOG3881 Uncharacterized conser 99.6 1.7E-13 3.7E-18 108.7 18.3 203 14-220 101-326 (412)
219 PF08662 eIF2A: Eukaryotic tra 99.6 1.8E-13 3.9E-18 103.8 17.9 154 107-267 10-187 (194)
220 KOG1587 Cytoplasmic dynein int 99.6 1.7E-13 3.6E-18 117.6 18.6 200 15-215 288-517 (555)
221 PRK03629 tolB translocation pr 99.6 3.9E-12 8.4E-17 108.6 26.8 225 40-274 179-421 (429)
222 KOG1272 WD40-repeat-containing 99.6 4.6E-15 1E-19 119.9 8.2 199 4-206 196-401 (545)
223 PF02239 Cytochrom_D1: Cytochr 99.6 1.4E-11 2.9E-16 102.6 29.1 251 14-267 32-356 (369)
224 PRK02889 tolB translocation pr 99.6 9.7E-13 2.1E-17 112.4 22.9 209 12-223 189-411 (427)
225 KOG0974 WD-repeat protein WDR6 99.6 9.8E-13 2.1E-17 115.9 22.4 119 12-133 169-289 (967)
226 PRK02889 tolB translocation pr 99.6 3.6E-12 7.8E-17 108.9 24.6 225 40-272 176-416 (427)
227 PF08662 eIF2A: Eukaryotic tra 99.6 1.8E-12 3.9E-17 98.4 19.6 153 64-222 9-186 (194)
228 PRK04922 tolB translocation pr 99.5 5.7E-12 1.2E-16 108.0 24.1 222 40-271 184-423 (433)
229 KOG2394 WD40 protein DMR-N9 [G 99.5 5.3E-13 1.1E-17 110.0 16.7 236 21-276 126-380 (636)
230 KOG4190 Uncharacterized conser 99.5 3.6E-14 7.8E-19 117.5 7.7 215 53-272 728-962 (1034)
231 PRK05137 tolB translocation pr 99.5 4.3E-11 9.2E-16 102.7 26.7 218 40-267 182-420 (435)
232 KOG2139 WD40 repeat protein [G 99.5 4.4E-11 9.6E-16 94.5 23.2 243 9-258 130-431 (445)
233 KOG0974 WD-repeat protein WDR6 99.5 2.2E-12 4.8E-17 113.7 17.1 194 20-214 89-288 (967)
234 KOG2139 WD40 repeat protein [G 99.5 2.4E-11 5.2E-16 95.9 19.3 183 18-203 98-299 (445)
235 KOG2111 Uncharacterized conser 99.5 2.8E-11 6.2E-16 93.9 19.3 172 40-215 75-257 (346)
236 KOG1064 RAVE (regulator of V-A 99.5 6.3E-13 1.4E-17 122.8 12.0 198 56-268 2204-2408(2439)
237 TIGR02800 propeller_TolB tol-p 99.5 6E-11 1.3E-15 101.4 23.7 208 9-222 180-404 (417)
238 KOG4497 Uncharacterized conser 99.5 6E-13 1.3E-17 103.6 10.0 227 23-266 13-248 (447)
239 PF02239 Cytochrom_D1: Cytochr 99.5 6.3E-11 1.4E-15 98.7 22.5 236 31-269 6-268 (369)
240 KOG4547 WD40 repeat-containing 99.4 7.1E-11 1.5E-15 98.6 22.0 190 28-259 3-221 (541)
241 KOG1064 RAVE (regulator of V-A 99.4 2E-12 4.2E-17 119.6 13.5 200 13-224 2203-2408(2439)
242 TIGR02800 propeller_TolB tol-p 99.4 3.1E-10 6.7E-15 97.1 25.8 220 40-269 170-407 (417)
243 PRK00178 tolB translocation pr 99.4 1.8E-10 3.8E-15 98.9 23.8 201 11-214 191-406 (430)
244 KOG2321 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 102.2 15.2 190 23-213 138-342 (703)
245 TIGR03300 assembly_YfgL outer 99.4 5.1E-10 1.1E-14 94.4 24.3 232 30-270 105-350 (377)
246 PRK04792 tolB translocation pr 99.4 3.1E-10 6.7E-15 97.4 22.8 209 12-224 211-434 (448)
247 KOG4547 WD40 repeat-containing 99.4 1.9E-11 4.1E-16 101.9 14.4 183 70-276 3-190 (541)
248 TIGR02658 TTQ_MADH_Hv methylam 99.4 9.3E-09 2E-13 84.2 28.7 233 26-267 53-339 (352)
249 COG5170 CDC55 Serine/threonine 99.4 5.1E-11 1.1E-15 92.5 14.6 240 17-259 25-368 (460)
250 KOG1409 Uncharacterized conser 99.4 2.7E-10 5.9E-15 89.5 18.7 246 11-262 17-274 (404)
251 KOG1334 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 100.5 11.7 246 14-261 181-469 (559)
252 PF10282 Lactonase: Lactonase, 99.3 2.5E-08 5.3E-13 83.0 31.0 243 21-265 39-331 (345)
253 KOG2315 Predicted translation 99.3 6.6E-10 1.4E-14 92.4 20.6 237 18-263 34-394 (566)
254 PRK00178 tolB translocation pr 99.3 4.5E-09 9.8E-14 90.2 26.7 220 41-270 180-417 (430)
255 KOG0280 Uncharacterized conser 99.3 1E-09 2.2E-14 84.6 19.9 239 19-260 70-335 (339)
256 KOG0882 Cyclophilin-related pe 99.3 9.3E-11 2E-15 95.1 14.2 255 16-275 7-321 (558)
257 PRK04792 tolB translocation pr 99.3 4.3E-09 9.3E-14 90.5 25.0 221 41-271 199-437 (448)
258 KOG4532 WD40-like repeat conta 99.3 3.5E-09 7.7E-14 80.8 21.1 231 29-260 83-333 (344)
259 PF13360 PQQ_2: PQQ-like domai 99.3 6.4E-09 1.4E-13 81.9 23.6 215 39-263 2-235 (238)
260 PLN02919 haloacid dehalogenase 99.3 2.8E-08 6E-13 93.3 30.6 238 22-262 571-892 (1057)
261 KOG1409 Uncharacterized conser 99.3 3.1E-10 6.8E-15 89.2 14.3 121 13-133 109-271 (404)
262 TIGR03300 assembly_YfgL outer 99.2 2.1E-08 4.5E-13 84.6 25.4 225 30-266 65-305 (377)
263 KOG4190 Uncharacterized conser 99.2 4.1E-11 8.9E-16 99.7 8.7 237 12-255 729-985 (1034)
264 PRK01029 tolB translocation pr 99.2 1.5E-08 3.2E-13 86.6 23.7 208 12-221 178-410 (428)
265 KOG0280 Uncharacterized conser 99.2 2.5E-09 5.3E-14 82.5 16.0 135 21-157 124-264 (339)
266 KOG1354 Serine/threonine prote 99.2 3.7E-09 8E-14 83.3 15.5 210 60-270 25-314 (433)
267 KOG2695 WD40 repeat protein [G 99.1 3.4E-10 7.3E-15 89.1 9.3 156 76-269 228-387 (425)
268 KOG4497 Uncharacterized conser 99.1 8E-10 1.7E-14 86.5 10.0 180 19-212 49-238 (447)
269 PRK01029 tolB translocation pr 99.1 3.6E-07 7.8E-12 78.2 25.9 220 41-265 166-410 (428)
270 PLN02919 haloacid dehalogenase 99.1 2.1E-07 4.5E-12 87.6 26.1 196 21-218 626-892 (1057)
271 KOG3914 WD repeat protein WDR4 99.1 4.9E-09 1.1E-13 84.0 13.1 155 23-180 67-229 (390)
272 TIGR02658 TTQ_MADH_Hv methylam 99.0 2E-06 4.4E-11 70.7 28.0 218 40-267 27-296 (352)
273 PRK11138 outer membrane biogen 99.0 2E-07 4.4E-12 79.1 23.2 230 30-268 120-363 (394)
274 KOG0882 Cyclophilin-related pe 99.0 2.7E-09 5.8E-14 86.8 10.8 208 59-267 8-240 (558)
275 KOG3914 WD repeat protein WDR4 99.0 6.2E-09 1.3E-13 83.5 12.4 160 107-270 67-235 (390)
276 PF13360 PQQ_2: PQQ-like domai 99.0 1.4E-07 3.1E-12 74.3 20.3 191 28-221 34-237 (238)
277 PRK04043 tolB translocation pr 99.0 8.6E-07 1.9E-11 75.5 25.0 191 19-214 188-400 (419)
278 PF00400 WD40: WD domain, G-be 99.0 2.3E-09 5E-14 58.8 6.4 39 50-88 1-39 (39)
279 KOG0309 Conserved WD40 repeat- 99.0 1.9E-08 4.1E-13 86.7 14.7 238 21-260 70-341 (1081)
280 PF10282 Lactonase: Lactonase, 99.0 6.2E-06 1.3E-10 68.7 28.9 218 40-258 13-275 (345)
281 PF00400 WD40: WD domain, G-be 99.0 2.7E-09 5.8E-14 58.6 6.1 39 92-130 1-39 (39)
282 KOG0309 Conserved WD40 repeat- 99.0 8.2E-09 1.8E-13 88.9 11.2 252 17-273 23-302 (1081)
283 KOG1275 PAB-dependent poly(A) 98.9 6E-08 1.3E-12 85.5 15.6 180 29-213 146-341 (1118)
284 KOG1832 HIV-1 Vpr-binding prot 98.9 1.7E-09 3.7E-14 94.8 5.6 199 52-268 1093-1301(1516)
285 KOG1912 WD40 repeat protein [G 98.9 9.1E-08 2E-12 83.1 15.8 254 8-262 45-368 (1062)
286 KOG2041 WD40 repeat protein [G 98.9 2E-07 4.3E-12 80.5 17.5 250 19-276 15-314 (1189)
287 PF15492 Nbas_N: Neuroblastoma 98.9 1.2E-06 2.5E-11 68.0 19.8 192 21-226 46-271 (282)
288 KOG4714 Nucleoporin [Nuclear s 98.9 1.5E-07 3.2E-12 71.8 14.6 199 14-215 31-255 (319)
289 COG5354 Uncharacterized protei 98.9 7.2E-07 1.6E-11 74.0 19.7 236 19-261 72-398 (561)
290 COG5354 Uncharacterized protei 98.9 6.2E-07 1.3E-11 74.4 18.7 236 17-260 31-308 (561)
291 KOG2314 Translation initiation 98.9 7.5E-07 1.6E-11 74.8 18.8 232 22-261 214-528 (698)
292 KOG4532 WD40-like repeat conta 98.8 4.3E-07 9.3E-12 69.6 15.8 187 80-275 50-255 (344)
293 COG4946 Uncharacterized protei 98.8 4.7E-06 1E-10 69.0 22.8 121 12-133 353-478 (668)
294 KOG2695 WD40 repeat protein [G 98.8 7E-09 1.5E-13 81.8 6.1 118 17-135 251-379 (425)
295 PF15492 Nbas_N: Neuroblastoma 98.8 2.1E-05 4.5E-10 61.2 24.8 233 24-269 3-270 (282)
296 PRK11138 outer membrane biogen 98.8 3.6E-06 7.9E-11 71.5 22.5 223 30-263 69-317 (394)
297 KOG1645 RING-finger-containing 98.8 3.6E-07 7.9E-12 73.7 15.0 93 42-135 175-269 (463)
298 PF08450 SGL: SMP-30/Gluconola 98.8 3.3E-05 7.2E-10 61.2 29.6 208 22-241 3-238 (246)
299 KOG2041 WD40 repeat protein [G 98.8 3.3E-07 7.2E-12 79.1 15.0 192 12-205 65-279 (1189)
300 KOG2314 Translation initiation 98.8 1.6E-06 3.5E-11 72.9 18.4 235 20-258 251-573 (698)
301 PF04762 IKI3: IKI3 family; I 98.8 8.2E-06 1.8E-10 75.8 24.9 199 12-214 204-456 (928)
302 KOG2315 Predicted translation 98.8 6E-06 1.3E-10 69.5 21.5 198 16-220 163-395 (566)
303 COG2706 3-carboxymuconate cycl 98.8 5.1E-05 1.1E-09 60.8 27.7 247 15-262 36-327 (346)
304 PRK04043 tolB translocation pr 98.7 3.6E-05 7.9E-10 65.6 26.1 200 61-268 188-409 (419)
305 KOG2114 Vacuolar assembly/sort 98.7 4.8E-06 1E-10 73.5 20.4 200 25-227 30-257 (933)
306 COG4946 Uncharacterized protei 98.7 1.3E-05 2.8E-10 66.5 21.2 208 27-244 275-504 (668)
307 COG2706 3-carboxymuconate cycl 98.7 3.3E-05 7.2E-10 61.9 23.0 220 39-259 15-275 (346)
308 KOG1275 PAB-dependent poly(A) 98.7 8.5E-07 1.8E-11 78.5 15.4 181 72-256 147-340 (1118)
309 COG5170 CDC55 Serine/threonine 98.7 4.5E-07 9.7E-12 71.0 12.1 209 60-269 26-321 (460)
310 KOG1912 WD40 repeat protein [G 98.7 5E-06 1.1E-10 72.7 18.7 235 21-259 18-305 (1062)
311 KOG1645 RING-finger-containing 98.7 3.5E-06 7.5E-11 68.2 16.5 238 12-258 187-461 (463)
312 PF04762 IKI3: IKI3 family; I 98.6 3.2E-05 6.9E-10 72.0 24.8 230 18-256 75-377 (928)
313 KOG4714 Nucleoporin [Nuclear s 98.6 4.8E-07 1E-11 69.1 10.2 164 11-175 82-255 (319)
314 KOG2114 Vacuolar assembly/sort 98.6 1.9E-05 4.1E-10 69.9 20.5 200 66-271 29-257 (933)
315 cd00216 PQQ_DH Dehydrogenases 98.6 4.6E-05 1E-09 66.6 22.6 233 31-268 111-434 (488)
316 KOG2066 Vacuolar assembly/sort 98.6 1.8E-05 3.8E-10 69.6 19.1 181 19-214 40-233 (846)
317 KOG1832 HIV-1 Vpr-binding prot 98.5 1E-07 2.2E-12 84.0 4.4 196 12-222 1095-1299(1516)
318 KOG2066 Vacuolar assembly/sort 98.5 5.5E-06 1.2E-10 72.6 14.8 153 14-174 54-233 (846)
319 PF08450 SGL: SMP-30/Gluconola 98.5 0.00039 8.5E-09 55.1 24.4 198 65-269 4-223 (246)
320 PF07433 DUF1513: Protein of u 98.4 0.00058 1.3E-08 54.7 23.8 197 24-223 10-256 (305)
321 PF07433 DUF1513: Protein of u 98.3 0.00038 8.3E-09 55.7 20.3 182 24-208 56-279 (305)
322 PF11768 DUF3312: Protein of u 98.3 4.4E-06 9.6E-11 71.0 9.9 76 16-93 257-332 (545)
323 PF11768 DUF3312: Protein of u 98.3 2.6E-05 5.6E-10 66.5 13.7 113 19-133 206-330 (545)
324 KOG3621 WD40 repeat-containing 98.3 4.7E-05 1E-09 66.1 14.9 153 17-169 32-193 (726)
325 KOG1920 IkappaB kinase complex 98.3 0.0015 3.3E-08 60.5 24.7 196 19-216 69-324 (1265)
326 PF08553 VID27: VID27 cytoplas 98.2 0.00029 6.3E-09 63.8 19.5 140 72-213 493-646 (794)
327 smart00320 WD40 WD40 repeats. 98.1 7.3E-06 1.6E-10 43.7 4.9 36 11-46 5-40 (40)
328 KOG1008 Uncharacterized conser 98.1 2.1E-06 4.5E-11 73.5 2.9 192 20-214 58-275 (783)
329 KOG2444 WD40 repeat protein [G 98.1 8.2E-06 1.8E-10 61.5 5.3 142 115-259 31-178 (238)
330 cd00216 PQQ_DH Dehydrogenases 98.0 0.0049 1.1E-07 54.0 23.1 191 30-223 61-328 (488)
331 PHA02713 hypothetical protein; 98.0 0.00088 1.9E-08 59.5 18.1 225 41-271 273-546 (557)
332 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0041 8.9E-08 48.3 20.8 83 30-112 63-145 (354)
333 PRK02888 nitrous-oxide reducta 98.0 0.0018 3.9E-08 56.9 18.9 168 82-259 215-405 (635)
334 PF06433 Me-amine-dh_H: Methyl 98.0 0.0057 1.2E-07 49.8 28.1 239 24-268 41-330 (342)
335 smart00320 WD40 WD40 repeats. 98.0 3.6E-05 7.8E-10 40.8 5.7 39 50-88 2-40 (40)
336 KOG2395 Protein involved in va 98.0 0.00031 6.7E-09 59.4 13.3 140 71-213 344-499 (644)
337 PRK02888 nitrous-oxide reducta 98.0 0.0047 1E-07 54.4 20.8 183 25-215 199-405 (635)
338 PF03178 CPSF_A: CPSF A subuni 97.9 0.0074 1.6E-07 49.9 20.6 176 82-258 2-202 (321)
339 PF04053 Coatomer_WDAD: Coatom 97.9 0.0038 8.2E-08 53.6 18.6 148 55-216 27-175 (443)
340 PF03178 CPSF_A: CPSF A subuni 97.8 0.013 2.7E-07 48.5 24.3 171 40-214 2-202 (321)
341 KOG4640 Anaphase-promoting com 97.8 0.00015 3.2E-09 62.4 9.2 93 18-111 20-114 (665)
342 PF08596 Lgl_C: Lethal giant l 97.8 0.016 3.4E-07 49.1 22.8 226 20-246 3-324 (395)
343 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.024 5.2E-07 50.1 25.1 235 31-269 121-501 (527)
344 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0048 1E-07 41.6 14.0 99 105-209 2-109 (111)
345 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0052 1.1E-07 41.4 14.7 100 21-127 2-109 (111)
346 PF00780 CNH: CNH domain; Int 97.7 0.016 3.4E-07 46.7 26.1 228 28-271 5-268 (275)
347 KOG1008 Uncharacterized conser 97.7 8.5E-06 1.8E-10 69.9 0.5 161 11-174 95-275 (783)
348 PF02897 Peptidase_S9_N: Proly 97.7 0.025 5.5E-07 48.5 29.1 238 21-263 126-409 (414)
349 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.017 3.7E-07 45.0 22.2 105 29-135 22-126 (354)
350 COG3391 Uncharacterized conser 97.7 0.029 6.2E-07 47.6 24.4 199 23-223 78-292 (381)
351 PF14655 RAB3GAP2_N: Rab3 GTPa 97.6 0.029 6.3E-07 47.6 21.3 82 187-268 310-408 (415)
352 KOG4441 Proteins containing BT 97.6 0.014 3E-07 52.1 18.3 230 27-262 282-550 (571)
353 KOG3617 WD40 and TPR repeat-co 97.5 0.0027 5.8E-08 57.0 12.9 70 21-90 62-131 (1416)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.5 0.044 9.4E-07 48.5 20.2 190 72-263 69-338 (527)
355 PF06977 SdiA-regulated: SdiA- 97.5 0.032 7E-07 44.0 24.5 180 13-223 16-209 (248)
356 KOG3617 WD40 and TPR repeat-co 97.5 0.004 8.6E-08 55.9 13.2 109 22-132 19-131 (1416)
357 PHA02713 hypothetical protein; 97.4 0.006 1.3E-07 54.3 14.4 194 29-225 303-544 (557)
358 COG3391 Uncharacterized conser 97.4 0.06 1.3E-06 45.7 27.9 246 21-271 33-296 (381)
359 TIGR03074 PQQ_membr_DH membran 97.4 0.092 2E-06 48.4 21.8 232 30-267 194-486 (764)
360 KOG3621 WD40 repeat-containing 97.4 0.0059 1.3E-07 53.6 13.2 117 59-175 32-155 (726)
361 PF04841 Vps16_N: Vps16, N-ter 97.4 0.069 1.5E-06 45.7 27.2 175 41-223 62-255 (410)
362 KOG2079 Vacuolar assembly/sort 97.2 0.0018 3.8E-08 59.4 8.4 102 28-131 97-202 (1206)
363 KOG1920 IkappaB kinase complex 97.2 0.0086 1.9E-07 55.8 12.7 110 23-133 200-323 (1265)
364 PF04841 Vps16_N: Vps16, N-ter 97.2 0.11 2.5E-06 44.4 21.2 177 83-267 62-255 (410)
365 KOG2444 WD40 repeat protein [G 97.2 0.002 4.3E-08 48.9 6.9 103 30-132 70-177 (238)
366 KOG4640 Anaphase-promoting com 97.1 0.0027 5.9E-08 54.9 8.5 74 61-135 21-95 (665)
367 KOG2079 Vacuolar assembly/sort 97.1 0.005 1.1E-07 56.6 9.9 108 148-257 91-202 (1206)
368 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.17 3.7E-06 42.5 20.5 233 27-271 1-280 (353)
369 PHA03098 kelch-like protein; P 97.0 0.11 2.4E-06 46.2 17.6 188 70-262 293-515 (534)
370 PF12894 Apc4_WD40: Anaphase-p 97.0 0.004 8.7E-08 35.1 5.5 35 183-218 10-44 (47)
371 PF08596 Lgl_C: Lethal giant l 97.0 0.19 4E-06 42.8 22.7 205 62-269 3-301 (395)
372 PHA03098 kelch-like protein; P 97.0 0.087 1.9E-06 46.9 16.7 186 29-217 294-514 (534)
373 PF06433 Me-amine-dh_H: Methyl 96.9 0.18 3.9E-06 41.4 22.2 199 23-224 99-330 (342)
374 COG0823 TolB Periplasmic compo 96.9 0.12 2.5E-06 44.4 16.2 166 92-261 182-361 (425)
375 PHA02790 Kelch-like protein; P 96.9 0.13 2.7E-06 45.2 16.5 104 29-134 271-386 (480)
376 PF08553 VID27: VID27 cytoplas 96.8 0.077 1.7E-06 48.7 15.3 142 29-173 492-646 (794)
377 KOG4441 Proteins containing BT 96.8 0.13 2.8E-06 46.0 16.1 186 29-217 332-549 (571)
378 PF04053 Coatomer_WDAD: Coatom 96.7 0.33 7.1E-06 42.0 23.6 221 15-260 29-264 (443)
379 COG3490 Uncharacterized protei 96.7 0.12 2.5E-06 41.1 13.4 101 24-124 119-247 (366)
380 PF05096 Glu_cyclase_2: Glutam 96.7 0.23 4.9E-06 39.3 21.7 111 21-135 47-160 (264)
381 COG0823 TolB Periplasmic compo 96.7 0.33 7.1E-06 41.8 17.1 188 50-245 182-386 (425)
382 PF12894 Apc4_WD40: Anaphase-p 96.6 0.0089 1.9E-07 33.7 5.0 30 18-47 11-40 (47)
383 PHA02790 Kelch-like protein; P 96.5 0.46 1E-05 41.7 17.4 184 71-262 271-474 (480)
384 PF14583 Pectate_lyase22: Olig 96.3 0.56 1.2E-05 39.3 24.2 93 25-117 42-139 (386)
385 PRK13616 lipoprotein LpqB; Pro 96.0 0.42 9.1E-06 43.0 14.9 106 21-131 399-524 (591)
386 PRK13616 lipoprotein LpqB; Pro 95.9 1.2 2.6E-05 40.1 18.9 105 19-128 350-472 (591)
387 PF14870 PSII_BNR: Photosynthe 95.9 0.76 1.7E-05 37.5 17.7 108 18-127 144-256 (302)
388 PF00780 CNH: CNH domain; Int 95.8 0.78 1.7E-05 36.8 22.9 197 19-225 36-266 (275)
389 KOG2395 Protein involved in va 95.7 0.5 1.1E-05 40.9 13.0 142 29-174 344-500 (644)
390 COG5167 VID27 Protein involved 95.5 0.5 1.1E-05 40.8 12.4 138 71-213 478-631 (776)
391 PF00930 DPPIV_N: Dipeptidyl p 95.5 1.3 2.7E-05 37.3 23.0 237 6-245 30-344 (353)
392 KOG4499 Ca2+-binding protein R 95.5 0.39 8.4E-06 37.2 10.7 101 22-122 161-275 (310)
393 COG3386 Gluconolactonase [Carb 95.4 1.2 2.7E-05 36.5 18.5 83 186-270 164-254 (307)
394 KOG4499 Ca2+-binding protein R 95.3 0.99 2.1E-05 35.0 18.1 177 31-239 72-264 (310)
395 PF12234 Rav1p_C: RAVE protein 95.3 0.83 1.8E-05 41.1 13.7 106 23-131 34-155 (631)
396 PF14583 Pectate_lyase22: Olig 95.1 1.8 3.9E-05 36.4 21.4 250 5-257 66-380 (386)
397 COG3490 Uncharacterized protei 95.0 1.5 3.2E-05 35.2 16.6 61 67-129 120-186 (366)
398 PRK10115 protease 2; Provision 94.9 3.1 6.8E-05 38.4 28.3 236 20-261 128-397 (686)
399 PF12234 Rav1p_C: RAVE protein 94.8 2.9 6.4E-05 37.7 15.9 71 61-131 30-103 (631)
400 TIGR03118 PEPCTERM_chp_1 conse 94.7 1.9 4.2E-05 34.9 22.5 208 62-270 24-291 (336)
401 PF08801 Nucleoporin_N: Nup133 94.6 2.6 5.7E-05 36.3 15.2 30 186-215 191-220 (422)
402 PF07569 Hira: TUP1-like enhan 94.6 0.74 1.6E-05 35.7 10.4 72 148-220 14-101 (219)
403 PF10313 DUF2415: Uncharacteri 94.5 0.2 4.3E-06 27.5 5.0 30 186-215 2-34 (43)
404 KOG3630 Nuclear pore complex, 94.0 0.89 1.9E-05 43.1 10.8 151 64-214 45-228 (1405)
405 PF07569 Hira: TUP1-like enhan 93.9 0.59 1.3E-05 36.3 8.6 72 192-264 18-101 (219)
406 PF14655 RAB3GAP2_N: Rab3 GTPa 93.7 1.1 2.3E-05 38.4 10.4 86 14-99 303-407 (415)
407 COG3204 Uncharacterized protei 93.6 3.2 7E-05 33.4 19.1 200 21-223 46-271 (316)
408 PF10313 DUF2415: Uncharacteri 93.5 0.53 1.2E-05 25.8 5.4 31 61-91 1-34 (43)
409 COG3204 Uncharacterized protei 93.3 3.6 7.8E-05 33.2 20.1 118 15-132 82-210 (316)
410 KOG1916 Nuclear protein, conta 92.8 0.18 3.9E-06 46.3 4.7 199 12-215 126-375 (1283)
411 KOG1916 Nuclear protein, conta 92.6 0.069 1.5E-06 48.8 1.9 113 21-134 186-325 (1283)
412 PF11715 Nup160: Nucleoporin N 92.6 0.81 1.8E-05 40.9 8.6 29 239-267 229-257 (547)
413 PF11715 Nup160: Nucleoporin N 92.4 0.92 2E-05 40.6 8.7 37 62-98 216-256 (547)
414 KOG1983 Tomosyn and related SN 92.3 11 0.00025 36.4 16.1 29 20-48 37-65 (993)
415 PF07995 GSDH: Glucose / Sorbo 92.1 6.1 0.00013 32.9 23.1 103 21-125 4-136 (331)
416 PF14727 PHTB1_N: PTHB1 N-term 91.9 7.5 0.00016 33.4 16.4 141 71-212 36-202 (418)
417 TIGR03074 PQQ_membr_DH membran 91.8 11 0.00024 35.3 20.9 69 30-99 260-353 (764)
418 PF10168 Nup88: Nuclear pore c 91.7 11 0.00024 35.0 15.2 32 184-215 146-180 (717)
419 TIGR03118 PEPCTERM_chp_1 conse 91.6 6.5 0.00014 32.0 20.0 202 22-226 26-291 (336)
420 KOG1897 Damage-specific DNA bi 91.3 14 0.00029 35.1 25.9 111 152-262 495-619 (1096)
421 KOG1897 Damage-specific DNA bi 91.2 14 0.0003 35.0 23.7 248 20-273 585-871 (1096)
422 PF05096 Glu_cyclase_2: Glutam 91.1 6.6 0.00014 31.3 20.0 170 94-267 35-212 (264)
423 PRK13684 Ycf48-like protein; P 90.8 8.7 0.00019 32.0 16.5 107 18-127 172-283 (334)
424 PF02897 Peptidase_S9_N: Proly 90.3 11 0.00024 32.4 27.3 202 62-266 125-365 (414)
425 PF15390 DUF4613: Domain of un 90.1 13 0.00029 33.1 13.5 150 59-215 18-187 (671)
426 COG3386 Gluconolactonase [Carb 90.1 9.6 0.00021 31.4 22.5 203 25-237 31-263 (307)
427 PLN00033 photosystem II stabil 89.9 12 0.00025 32.1 17.0 107 21-130 241-354 (398)
428 KOG1900 Nuclear pore complex, 89.5 5.3 0.00011 38.8 10.8 180 17-215 77-273 (1311)
429 PF06977 SdiA-regulated: SdiA- 89.0 10 0.00022 30.2 21.2 182 55-267 16-209 (248)
430 PF08728 CRT10: CRT10; InterP 88.7 11 0.00023 34.8 11.7 110 21-131 103-245 (717)
431 COG1520 FOG: WD40-like repeat 88.6 14 0.0003 31.2 21.5 190 32-224 70-278 (370)
432 TIGR02276 beta_rpt_yvtn 40-res 88.5 2.5 5.4E-05 22.6 5.9 40 28-68 1-41 (42)
433 KOG4460 Nuclear pore complex, 88.2 18 0.00038 32.0 14.0 34 186-219 167-203 (741)
434 PF14781 BBS2_N: Ciliary BBSom 88.2 7.3 0.00016 27.5 12.1 108 22-132 2-125 (136)
435 TIGR02604 Piru_Ver_Nterm putat 88.0 15 0.00033 31.0 14.8 139 106-247 17-202 (367)
436 TIGR02604 Piru_Ver_Nterm putat 87.4 14 0.0003 31.3 11.3 99 20-121 73-202 (367)
437 smart00564 PQQ beta-propeller 87.3 2 4.3E-05 21.6 4.1 25 198-222 8-32 (33)
438 smart00564 PQQ beta-propeller 86.5 2.1 4.6E-05 21.5 3.9 26 73-98 7-32 (33)
439 TIGR02276 beta_rpt_yvtn 40-res 86.4 3.1 6.7E-05 22.2 4.8 32 238-269 1-33 (42)
440 COG4590 ABC-type uncharacteriz 86.3 3.5 7.6E-05 35.4 6.9 166 56-223 216-395 (733)
441 TIGR03548 mutarot_permut cycli 85.8 19 0.0004 29.8 18.9 64 155-218 123-198 (323)
442 PF01011 PQQ: PQQ enzyme repea 85.6 3.3 7.1E-05 21.8 4.4 27 198-224 2-28 (38)
443 PF05694 SBP56: 56kDa selenium 85.3 24 0.00051 30.5 18.5 185 29-215 86-343 (461)
444 PF12768 Rax2: Cortical protei 85.3 16 0.00035 29.6 10.1 93 39-132 15-123 (281)
445 PF01011 PQQ: PQQ enzyme repea 85.0 3.4 7.4E-05 21.8 4.3 27 74-100 2-28 (38)
446 KOG2377 Uncharacterized conser 84.5 17 0.00036 31.5 10.0 104 14-119 62-170 (657)
447 PF05694 SBP56: 56kDa selenium 84.5 26 0.00056 30.3 17.9 175 28-202 139-391 (461)
448 PF07250 Glyoxal_oxid_N: Glyox 83.3 21 0.00045 28.3 11.5 82 42-123 48-138 (243)
449 PF14269 Arylsulfotran_2: Aryl 82.7 25 0.00054 28.9 10.3 73 186-258 145-220 (299)
450 PF07676 PD40: WD40-like Beta 81.7 5.8 0.00013 20.8 5.3 29 17-45 7-38 (39)
451 PF14870 PSII_BNR: Photosynthe 81.6 28 0.00061 28.6 22.2 153 56-211 140-301 (302)
452 PF10647 Gmad1: Lipoprotein Lp 81.2 26 0.00056 27.9 16.6 142 62-206 25-187 (253)
453 KOG2280 Vacuolar assembly/sort 81.2 46 0.001 30.8 15.8 185 79-267 61-255 (829)
454 KOG2247 WD40 repeat-containing 79.7 0.24 5.1E-06 42.4 -2.2 145 19-169 35-183 (615)
455 KOG2247 WD40 repeat-containing 79.4 0.37 8E-06 41.3 -1.2 140 64-206 38-180 (615)
456 PF14761 HPS3_N: Hermansky-Pud 79.0 17 0.00036 28.0 7.5 55 64-120 21-77 (215)
457 KOG4460 Nuclear pore complex, 78.3 37 0.00081 30.1 10.1 28 20-47 105-132 (741)
458 PLN02153 epithiospecifier prot 78.0 39 0.00085 28.2 20.8 63 30-92 33-111 (341)
459 PF12657 TFIIIC_delta: Transcr 78.0 16 0.00035 27.1 7.3 31 103-133 86-122 (173)
460 PF10168 Nup88: Nuclear pore c 78.0 61 0.0013 30.3 19.1 73 20-92 86-181 (717)
461 KOG3630 Nuclear pore complex, 77.9 14 0.0003 35.7 8.0 112 20-132 102-228 (1405)
462 PF12768 Rax2: Cortical protei 77.3 37 0.00081 27.6 10.3 78 17-95 35-128 (281)
463 PF01436 NHL: NHL repeat; Int 76.9 7 0.00015 19.0 4.0 25 187-211 4-28 (28)
464 KOG3522 Predicted guanine nucl 76.8 12 0.00025 34.8 7.1 140 116-260 549-699 (925)
465 PF05935 Arylsulfotrans: Aryls 76.3 55 0.0012 28.9 14.0 106 24-133 153-302 (477)
466 PLN02193 nitrile-specifier pro 76.3 54 0.0012 28.9 18.7 68 195-263 328-415 (470)
467 PF14779 BBS1: Ciliary BBSome 76.0 19 0.00042 28.7 7.4 71 185-255 177-255 (257)
468 PLN02153 epithiospecifier prot 76.0 45 0.00097 27.8 18.5 14 206-219 217-230 (341)
469 KOG3616 Selective LIM binding 74.8 9.5 0.00021 35.1 6.0 76 18-97 14-89 (1636)
470 COG1520 FOG: WD40-like repeat 73.5 55 0.0012 27.6 18.6 193 72-268 68-278 (370)
471 PF08728 CRT10: CRT10; InterP 72.9 29 0.00063 32.1 8.6 95 159-257 117-245 (717)
472 COG3823 Glutamine cyclotransfe 72.3 43 0.00093 25.9 13.0 103 29-134 55-160 (262)
473 COG4257 Vgb Streptogramin lyas 72.2 51 0.0011 26.7 15.7 147 61-216 62-220 (353)
474 KOG2280 Vacuolar assembly/sort 71.4 88 0.0019 29.1 15.9 177 37-219 61-251 (829)
475 TIGR03548 mutarot_permut cycli 70.3 60 0.0013 26.8 20.1 105 71-176 72-196 (323)
476 PF14781 BBS2_N: Ciliary BBSom 69.1 38 0.00083 24.0 13.4 110 110-221 6-132 (136)
477 PLN02193 nitrile-specifier pro 69.0 82 0.0018 27.8 21.3 189 30-219 176-415 (470)
478 PF14727 PHTB1_N: PTHB1 N-term 68.7 78 0.0017 27.4 26.6 143 29-173 36-203 (418)
479 PF14761 HPS3_N: Hermansky-Pud 68.6 30 0.00064 26.7 6.7 48 31-79 29-78 (215)
480 PF07250 Glyoxal_oxid_N: Glyox 68.2 23 0.00049 28.1 6.2 89 169-257 49-147 (243)
481 PF13570 PQQ_3: PQQ-like domai 68.1 11 0.00024 19.9 3.3 21 239-259 20-40 (40)
482 PF01731 Arylesterase: Arylest 67.3 31 0.00067 22.3 5.7 31 185-215 54-85 (86)
483 KOG2377 Uncharacterized conser 66.3 91 0.002 27.3 13.1 130 22-155 26-162 (657)
484 PF07995 GSDH: Glucose / Sorbo 65.6 79 0.0017 26.3 11.5 101 105-206 4-135 (331)
485 COG5167 VID27 Protein involved 63.2 53 0.0012 29.1 7.8 63 69-132 570-632 (776)
486 PF03088 Str_synth: Strictosid 62.5 40 0.00088 21.9 8.2 51 202-255 33-85 (89)
487 COG4590 ABC-type uncharacteriz 62.0 1.1E+02 0.0024 26.8 9.6 104 30-135 280-389 (733)
488 PF15525 DUF4652: Domain of un 61.7 68 0.0015 24.2 8.4 64 206-269 88-159 (200)
489 PF05935 Arylsulfotrans: Aryls 61.7 1.2E+02 0.0025 26.9 18.9 165 38-225 126-312 (477)
490 KOG3616 Selective LIM binding 61.0 21 0.00046 33.0 5.3 67 103-172 15-81 (1636)
491 KOG1898 Splicing factor 3b, su 58.9 1.9E+02 0.004 28.4 17.8 171 83-259 854-1049(1205)
492 PRK14131 N-acetylneuraminic ac 58.7 1.1E+02 0.0025 25.9 19.6 12 112-123 138-149 (376)
493 PF13449 Phytase-like: Esteras 58.6 1.1E+02 0.0023 25.5 12.1 59 20-79 86-165 (326)
494 PF12341 DUF3639: Protein of u 58.1 21 0.00046 17.3 3.8 23 187-211 4-26 (27)
495 TIGR03547 muta_rot_YjhT mutatr 57.8 1.1E+02 0.0024 25.5 17.3 53 29-81 63-128 (346)
496 PF02333 Phytase: Phytase; In 56.0 1.3E+02 0.0028 25.7 20.9 199 65-267 58-300 (381)
497 TIGR03547 muta_rot_YjhT mutatr 56.0 1.2E+02 0.0026 25.3 20.0 23 70-92 62-95 (346)
498 PF10395 Utp8: Utp8 family; I 53.9 1.9E+02 0.004 26.9 15.9 155 18-173 129-304 (670)
499 PF15390 DUF4613: Domain of un 53.2 1.8E+02 0.0039 26.5 12.9 155 11-173 12-185 (671)
500 TIGR03054 photo_alph_chp1 puta 52.8 81 0.0018 22.4 6.2 64 32-95 43-118 (135)
No 1
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-58 Score=335.15 Aligned_cols=269 Identities=57% Similarity=0.997 Sum_probs=262.5
Q ss_pred CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772 5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI 84 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v 84 (277)
++|..++.+|.+|+++|+.++|+-+|+|+++||.|++||+|++..|.+++++.+|...|..++.+.++..|++|+.|+.+
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 67888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV 164 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 164 (277)
.+||+++|+.++.|++|..+|+.+.|++....+++|+.|.++++||+++...+|++++....+.+.++.....++++|+.
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~ 163 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSV 163 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 165 DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
||++|.||+|.++......++||+|++|+++++..++++.|+++++.|-.+|++++.|.||.+..+.++||+...+..++
T Consensus 164 DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred CCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCeEEEEECcCccceeeeccCccee
Q 023772 245 GGSEDGYIYFWDLVDASVVAKFKAHSLVV 273 (277)
Q Consensus 245 sgs~d~~i~iwd~~~~~~~~~~~~h~~~v 273 (277)
+||+||.|++||+.++.++.++..|+.+|
T Consensus 244 sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~ 272 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDETQISKLSVVSTVI 272 (307)
T ss_pred eccCCceEEEEEeccceeeeeeccCCcee
Confidence 99999999999999999999999998774
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-49 Score=307.93 Aligned_cols=260 Identities=26% Similarity=0.423 Sum_probs=228.4
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
..+.||.++|.|++|+|+|..|+|||-|.++|+||+.+..+..+.++|..-|.+++|+||++.|++|+.||+|++||.++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cce-eEEeecccCceeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeec
Q 023772 92 GRV-IRKFRGHESEVNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSV 164 (277)
Q Consensus 92 ~~~-~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ 164 (277)
|++ .+.+.+|+..|++++|.| ..+++++++.||+++|||+.... .+..+..|..+++++.+.+.. +++|+.
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvrwGG~gliySgS~ 266 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVRWGGEGLIYSGSQ 266 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEEEcCCceEEecCC
Confidence 865 578999999999999975 46799999999999999987543 456678899999999998655 789999
Q ss_pred CCcEEEEEccCCcccc----------------------------------------------------------------
Q 023772 165 DGTVRTFDIRVGRELS---------------------------------------------------------------- 180 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~---------------------------------------------------------------- 180 (277)
|++|++|+...+....
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999864321000
Q ss_pred -----------------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772 181 -----------------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV 243 (277)
Q Consensus 181 -----------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (277)
..++..|+.+.||||+++++++|.|..|++||.++|+.+..|+||...++. ++++.|.++|
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYq--vawsaDsRLl 424 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQ--VAWSADSRLL 424 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEE--EEeccCccEE
Confidence 011224789999999999999999999999999999999999999876654 5678999999
Q ss_pred EeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772 244 TGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275 (277)
Q Consensus 244 ~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 275 (277)
++||.|.++++||+++.++...|.+|...|-.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLPGHADEVFA 456 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCCCCCceEEE
Confidence 99999999999999999999999999876643
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-46 Score=293.93 Aligned_cols=256 Identities=17% Similarity=0.287 Sum_probs=230.7
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD--NSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.|-.+||..+.|+.+++.|+|||.+|.+++|+..+...+.+|.+|...+.++.|+|. +..++||+.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 366889999999999999999999999999999999999999999999999999997 568999999999999999999
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRT 170 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i 170 (277)
.++..+.+|..+|..++|+|+|++|+|++.|.+-++||+++... .....+|...+..+.+.++ .+++|+.|..-++
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E--lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE--LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh--hHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999987543 3334677777877777654 4889999999999
Q ss_pred EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC-CCceEEeec
Q 023772 171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-SDAHVTGGS 247 (277)
Q Consensus 171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs 247 (277)
||+|+++++.. .+..+|.+++|+|+|-.|++|+.|+++++||++..+.+..+.+|.+ .+..++++| .|.+|+|+|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcc
Confidence 99999998754 4566899999999999999999999999999999999999999964 446677887 788999999
Q ss_pred CCCeEEEEECcCccceeeeccCcceeE
Q 023772 248 EDGYIYFWDLVDASVVAKFKAHSLVVK 274 (277)
Q Consensus 248 ~d~~i~iwd~~~~~~~~~~~~h~~~v~ 274 (277)
.|++++||...+..+++.+.||..-|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceE
Confidence 999999999999999999999987654
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.4e-45 Score=285.70 Aligned_cols=244 Identities=23% Similarity=0.341 Sum_probs=223.6
Q ss_pred cccceeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
+...+|+||.+.|.++.|+|. +..++||+.||++++|+..+..++..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 456789999999999999996 668999999999999999998999999999999999999999999999999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeec
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSV 164 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~ 164 (277)
||++++..+....+|..+|.+++|++||.+++|||.|..-++||++++. .+..+.+|-..|..+.++|+. +++|+.
T Consensus 288 WD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--CIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred cccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCc--EEEEecccccceeeEeECCCceEEeecCC
Confidence 9999999888889999999999999999999999999999999999865 467788899999999998875 999999
Q ss_pred CCcEEEEEccCCccccc--CCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772 165 DGTVRTFDIRVGRELSD--DLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (277)
|++++|||++..+++.. .+..-|+.+.|+| .|.+|++++.|+++++|...+..+++.+.||..+++ .+.+++++.
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~--s~Dis~d~~ 443 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI--SLDISPDSQ 443 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE--EEEeccCCc
Confidence 99999999998776544 3445789999999 788999999999999999999999999999987654 456799999
Q ss_pred eEEeecCCCeEEEEE
Q 023772 242 HVTGGSEDGYIYFWD 256 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd 256 (277)
++++++.|+++++|.
T Consensus 444 ~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 AIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEeccCceeeecc
Confidence 999999999999995
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.2e-42 Score=260.72 Aligned_cols=263 Identities=20% Similarity=0.319 Sum_probs=237.6
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..+|+||.+.|.++.|++|+++|+|+|.||.+.|||..|......+.....-|..++|+|.+++++.|+-|+.+.||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 46799999999999999999999999999999999999988888888888899999999999999999999999999998
Q ss_pred CC------ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEE
Q 023772 91 TG------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIG 161 (277)
Q Consensus 91 ~~------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 161 (277)
+. ...+.+.+|++.+.++.|.+ ...|+|+|.|.++-+||++++. .++.+.+|..-|.++.+.| +.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvS 204 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVS 204 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEe
Confidence 54 35677999999999999988 5688899999999999998753 5677889999998888766 55999
Q ss_pred eecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772 162 GSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS 239 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (277)
|+.|+..++||+|.+..... .+...|+++.|.|+|.-+++|++|+++|+||++..+.+..|.......-+..+.||..
T Consensus 205 g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 205 GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 99999999999999865543 4567899999999999999999999999999999999999987665566778899999
Q ss_pred CceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
|++|.+|..|.++.+||.-.++.+..|.+|...|++|
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 9999999999999999999999999999999999876
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.3e-43 Score=272.78 Aligned_cols=246 Identities=26% Similarity=0.450 Sum_probs=212.8
Q ss_pred ccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-EEEeccCccEEEEEEcC-----CCCEEEEEeCC
Q 023772 8 RTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKSHGREVRDVHVTA-----DNSKLISCGGD 81 (277)
Q Consensus 8 ~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~~~~~~-----~~~~l~t~s~d 81 (277)
+++..+.+||..-|.|++|+|||+.|+||+.||+|++||+.+|+++ +.+.+|...|++++|.| ...+|+++|.|
T Consensus 147 eTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skD 226 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKD 226 (480)
T ss_pred CCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCC
Confidence 4556778999999999999999999999999999999999998765 67999999999999975 55789999999
Q ss_pred CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC--------------------------
Q 023772 82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-------------------------- 135 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-------------------------- 135 (277)
|.|+|||+..+.++..+.+|+.+|+++.|--++ ++++||.|++|++|+...+.
T Consensus 227 g~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtg 305 (480)
T KOG0271|consen 227 GSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTG 305 (480)
T ss_pred CCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcc
Confidence 999999999999999999999999999998654 89999999999999854210
Q ss_pred ---------------------------------------------------CcceEeeccccCcEEEEEecCC--eEEEe
Q 023772 136 ---------------------------------------------------TEPIQIIDSFQDSVMSVCLTKT--EIIGG 162 (277)
Q Consensus 136 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~g 162 (277)
.+++..+.+|+..+..+.++|+ .++++
T Consensus 306 af~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa 385 (480)
T KOG0271|consen 306 AFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA 385 (480)
T ss_pred ccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence 0111122346666777777765 48999
Q ss_pred ecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 163 SVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
+.|+.|++||.++++.+... +-++|..++|+.|.+.|++||.|.++++||+++.++.+.+.||...++..+ ++|||
T Consensus 386 SFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD--wspDG 463 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD--WSPDG 463 (480)
T ss_pred ecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEE--ecCCC
Confidence 99999999999999876553 456899999999999999999999999999999999999999988776665 68999
Q ss_pred ceEEeecCCCeEEEEE
Q 023772 241 AHVTGGSEDGYIYFWD 256 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd 256 (277)
..+++|+.|..+++|.
T Consensus 464 ~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 464 QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceeecCCCceEEEeec
Confidence 9999999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-41 Score=254.10 Aligned_cols=253 Identities=25% Similarity=0.394 Sum_probs=215.9
Q ss_pred cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCC-----CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772 11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPH-----RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI 84 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v 84 (277)
..+|.+|.+.|..++..+. .+.+++++.|.++.+|++. .|..++.+.+|++.|..+..++++++.+++|.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3468899999999999886 5788899999999999754 577899999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe----EE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE----II 160 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 160 (277)
++||+++++..+.|.+|...|.+++|+++.+.++||+.|.+|++|+...... ....-..+.+-|..+.+.|+. ++
T Consensus 88 rlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 9999999999999999999999999999999999999999999999865321 111112225667888888773 88
Q ss_pred EeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772 161 GGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
+++.|+++++||+++.+.... .+...++.+++||||..+++|+.||.+.+||+..++.++.+.+. ..+..++|+|
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fsp 243 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSP 243 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC---CeEeeEEecC
Confidence 999999999999998765433 34568999999999999999999999999999999998777543 4567789999
Q ss_pred CCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
+..+|+.+. +..|+|||++++.++..++-
T Consensus 244 nrywL~~at-~~sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 244 NRYWLCAAT-ATSIKIWDLESKAVVEELKL 272 (315)
T ss_pred CceeEeecc-CCceEEEeccchhhhhhccc
Confidence 887777665 44599999999999888774
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-41 Score=267.83 Aligned_cols=270 Identities=23% Similarity=0.391 Sum_probs=231.8
Q ss_pred CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772 5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTADNSKLISCGGD 81 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d 81 (277)
.+|.++.+++..|.+.|..+.||++|+||||++.|.+..||.+... +..+++.+|..+|..+.|+||.+++++++.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 4688889999999999999999999999999999999999986443 4578999999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCe
Q 023772 82 RQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTE 158 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 158 (277)
..+++||+.+|.+...+.. |...+.+++|.||+..+++|+.|+++..||+.........-.. ...+..++ .+++.
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~~v~dlait~Dgk~ 368 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR--DPKVHDLAITYDGKY 368 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--cceeEEEEEcCCCcE
Confidence 9999999999998877753 4678999999999999999999999999998754322221111 12344444 45677
Q ss_pred EEEeecCCcEEEEEccCCccc-ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772 159 IIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT 237 (277)
Q Consensus 159 ~~~g~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
+++...|..|++|+.+..... .....+++++.++|.+++++++.-.+..+++||++..++++.|.||....+....||.
T Consensus 369 vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg 448 (519)
T KOG0293|consen 369 VLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG 448 (519)
T ss_pred EEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC
Confidence 888889999999998765544 2345689999999999999999999999999999999999999999877788887886
Q ss_pred C-CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 238 N-SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 238 ~-~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
- ++.++|+||+|+.||||+..+|+++.++.||+..|.++
T Consensus 449 g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV 488 (519)
T KOG0293|consen 449 GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV 488 (519)
T ss_pred CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE
Confidence 5 55899999999999999999999999999999998875
No 9
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.9e-41 Score=253.40 Aligned_cols=263 Identities=28% Similarity=0.541 Sum_probs=223.2
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...+.||++.|..+.|+|+|..++|||.|..|.+|+.. ..+....+++|+++|..+.|.+++..|+++|.|++++.||+
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 45678999999999999999999999999999999953 34556788899999999999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCC
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDG 166 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~ 166 (277)
++|++++.++.|..-|+++....- ..++.|++.|+++++||+|... .++++.. +-.+.++.+. ..++.+|+-|+
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~~-kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFEN-KYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhcccc-ceeEEEEEecccccceeeccccC
Confidence 999999999999999999985544 3578889999999999998643 3333321 2235566665 56799999999
Q ss_pred cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC----CceEEEEecccc--ceeeeeeEecC
Q 023772 167 TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST----GELLQEYKGHIC--KSFKTDCCLTN 238 (277)
Q Consensus 167 ~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~--~~~~~~~~~~~ 238 (277)
.|++||++.+.... ..+..+|+.+..+|+|.++++-+.|.++++||++. ..+++.|.+|.. ....+.|+++|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 99999998876543 35667999999999999999999999999999864 355788887632 23346688999
Q ss_pred CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
++.++..||.|+.+++||.....++.++.||-+.|..+
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 99999999999999999999999999999999888764
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-40 Score=247.34 Aligned_cols=244 Identities=21% Similarity=0.371 Sum_probs=206.9
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
...+.||+..|..+..++||++.+|+|.|+++|+||+.+++..+.|.+|...|.+++|++++..|+|||.|+++++|++.
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCceeEEeecc--cCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeec
Q 023772 91 TGRVIRKFRGH--ESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSV 164 (277)
Q Consensus 91 ~~~~~~~~~~h--~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~ 164 (277)
.+. ..+...+ ++.|+++.|+|. ...|+++|.|+++++||+++.+. ...+.+|...+..+.++|+ .+++|+.
T Consensus 136 g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 136 GVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred ccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCC
Confidence 544 4444433 789999999998 67999999999999999987543 3445567777777776655 5899999
Q ss_pred CCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc-------cceeeeeeEe
Q 023772 165 DGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI-------CKSFKTDCCL 236 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~~~ 236 (277)
||.+.+||++.++.+.. .....|++++|+|+.-+|.+ ..+..|+|||+.++.++.++.... .....+.+++
T Consensus 213 dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred CceEEEEEccCCceeEeccCCCeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 99999999999887654 45679999999998766555 456679999999998887765431 2345677889
Q ss_pred cCCCceEEeecCCCeEEEEECc
Q 023772 237 TNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 237 ~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+++|..|..|..|+.|++|.+.
T Consensus 292 s~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 292 SADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCCcEEEeeecCCcEEEEEee
Confidence 9999999999999999999875
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.1e-40 Score=279.11 Aligned_cols=260 Identities=28% Similarity=0.531 Sum_probs=226.2
Q ss_pred eeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 13 VLKG-HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 13 ~l~~-H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
.+.+ |...|.++.|+++|+++++++.|+.+++|+..+++ ..+.+.+|...|++++|+|+++++++++.|+++++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 3434 47899999999999999999999999999997777 77778899999999999999999999999999999999
Q ss_pred -CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772 90 -STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG 166 (277)
Q Consensus 90 -~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 166 (277)
..+..++++.+|...|++++|+|+++++++|+.|++|++||++.. +....+..|...+..+.+++ ..+++++.|+
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~--~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG--ECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC--eEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 556889999999999999999999999999999999999999874 45667788888888888765 4589999999
Q ss_pred cEEEEEccCCcc--c---ccCCCC-CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce-eeeeeEecCC
Q 023772 167 TVRTFDIRVGRE--L---SDDLGQ-PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS-FKTDCCLTNS 239 (277)
Q Consensus 167 ~i~i~d~~~~~~--~---~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 239 (277)
.|++||+.++.. . ...... +++++.|+|++.++++++.|+.+++||+..++....+.+|.... -......++.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG 390 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC
Confidence 999999998872 1 222222 68999999999999999999999999999999999999987641 2223345778
Q ss_pred CceEEeecCCCeEEEEECcCccceeeeccC-cceeE
Q 023772 240 DAHVTGGSEDGYIYFWDLVDASVVAKFKAH-SLVVK 274 (277)
Q Consensus 240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h-~~~v~ 274 (277)
+.++.+|+.|+.|++||+.++..+..+.+| ..++.
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 999999999999999999999999999999 55443
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-40 Score=257.49 Aligned_cols=266 Identities=24% Similarity=0.411 Sum_probs=236.3
Q ss_pred cc-cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 7 PR-TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 7 ~~-~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
|+ .+.+.+.+|..+|+.+-|.|+-...++++.|++|++||..+|++.+.+++|...+.++.|+..|++++++|.|-.++
T Consensus 96 pRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 96 PRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 44 45677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCC-CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEe
Q 023772 86 YWDVST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGG 162 (277)
Q Consensus 86 ~wd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g 162 (277)
+||.++ -++++...+|...|.++.|-|.+.++++++.|.+|+.|++.++ ..+..+..+..-+..+.+..+ .++++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg--~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG--YCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc--eeEEeccCchHhEEEEEecCCeeEEEec
Confidence 999987 5788889999999999999999999999999999999999865 456667777776666666554 48889
Q ss_pred ecCCcEEEEEccCCc--ccccCCCCCeeEEEEeCC---------------CCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772 163 SVDGTVRTFDIRVGR--ELSDDLGQPVNCISMSND---------------GNCILASCLDSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~--~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 225 (277)
+.|.++++|-+.+++ .....++++|.|++|-|+ +.++.+++.|++||+||+.++.++.++.+|
T Consensus 254 s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~gh 333 (406)
T KOG0295|consen 254 SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGH 333 (406)
T ss_pred CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecc
Confidence 999999999998873 445567889999998762 358999999999999999999999999999
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
.+ .+...+|+|.|+||++..+|+++++||+.++++.+.+.+|...|..+
T Consensus 334 dn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 334 DN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSL 382 (406)
T ss_pred cc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEE
Confidence 64 45677899999999999999999999999999999999998877654
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-40 Score=256.89 Aligned_cols=252 Identities=28% Similarity=0.495 Sum_probs=222.8
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
....+++||.+-|.|+++.|-..+++||+.|++++|||+.+|++..++.+|-..|..+++++...|+++++.|+.||.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 33567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772 89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG 166 (277)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 166 (277)
++..+.++.+.+|-+.|.+++.+|....|+||+.|.++++||+++. ..+..+.+|...+..+...+ .++++|+.|+
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr--~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--ASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeeccc--ceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 9999999999999999999999999999999999999999999974 45667788999998888774 4699999999
Q ss_pred cEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 167 TVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 167 ~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
+|++||++.++.... .+...+.+++.+|....+++++.| .|+-|++..|..++.+.+|... +..... ..+.+++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~i--intl~~-nsD~v~~ 375 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAI--INTLSV-NSDGVLV 375 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccce--eeeeee-ccCceEE
Confidence 999999999886654 455689999999999888888887 4999999999999888888543 333333 3456788
Q ss_pred eecCCCeEEEEECcCccceeee
Q 023772 245 GGSEDGYIYFWDLVDASVVAKF 266 (277)
Q Consensus 245 sgs~d~~i~iwd~~~~~~~~~~ 266 (277)
+|+..|.+.+||.++|-..+.+
T Consensus 376 ~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 376 SGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred EcCCceEEEEEecCcCcccccc
Confidence 8999999999999998665555
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.6e-39 Score=237.40 Aligned_cols=237 Identities=22% Similarity=0.370 Sum_probs=202.8
Q ss_pred CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeEEeecccCceeEE
Q 023772 31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR--VIRKFRGHESEVNAV 108 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i 108 (277)
-+|+|+|.|.+||+|...+|.+.++++.....|+.+.+.|+.+.|++++. ..|++||+.++. ++.+|.+|+..|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 58899999999999999999999999988899999999999999988765 479999999865 689999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCcccc---cCC
Q 023772 109 KFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELS---DDL 183 (277)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~---~~~ 183 (277)
.|..+++.++|||.||+++|||++.....+ ...+..++..+.+.++ +|++|..+|.|++||++...... ...
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccch---hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 999999999999999999999999754332 3345577888877765 49999999999999998764322 223
Q ss_pred CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772 184 GQPVNCISMSNDGNCILASCLDSTLRLLDRSTG------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 184 ~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
..+++++.+.|+|++++++-..|.+++|++-.. +++..|..| ...++.|.+||++++||++|.|.+++||+.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 468999999999999999999999999998543 345566666 457889999999999999999999999999
Q ss_pred cCc-cceeeeccCccee
Q 023772 258 VDA-SVVAKFKAHSLVV 273 (277)
Q Consensus 258 ~~~-~~~~~~~~h~~~v 273 (277)
++. +...++++|...+
T Consensus 245 ~~~~kle~~l~gh~rWv 261 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWV 261 (311)
T ss_pred CCceeeEEEeecCCceE
Confidence 998 7788899996543
No 15
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-41 Score=268.73 Aligned_cols=268 Identities=24% Similarity=0.460 Sum_probs=233.8
Q ss_pred CccccccceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772 5 DLPRTEANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGDR 82 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~ 82 (277)
.+|......+.||...|.++.|.| .+.+|+|+|.|+.|+||++.. ++++++|.+|..+|.+++|++++..++|+|.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 347777788999999999999999 899999999999999999876 889999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeE
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEI 159 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 159 (277)
.+|+||+++|+++..|. -...+.++.|+|++ +.++.|+.|+.|+.||++++. -++.+..+...+..+.+- +..+
T Consensus 281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceE
Confidence 99999999999998886 35577899999998 899999999999999999764 345556677777777764 4569
Q ss_pred EEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC---CceEEEEeccccceeeee
Q 023772 160 IGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST---GELLQEYKGHICKSFKTD 233 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~ 233 (277)
++.+.|+.+++|+.+....+.. ...+...|+..+|+++++++-+.|+.|.+|.... .+..+.|.||....+.+.
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 9999999999999987654432 3345778999999999999999999999998643 233457889988889999
Q ss_pred eEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772 234 CCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275 (277)
Q Consensus 234 ~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 275 (277)
+.|||||.+|++|+.||.+++||.++-+++.++++|+.++..
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 999999999999999999999999999999999999876643
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=235.17 Aligned_cols=254 Identities=18% Similarity=0.293 Sum_probs=211.7
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
++...+.|+.+...|+++.|++++. ..||+||+.++. ++.+|++|.+.|+++.|..+++.++|||.||++|+||+..
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC
Confidence 4445677999999999999999887 799999998764 5899999999999999999999999999999999999998
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE--EEecCCeEEEeecCCcEE
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKTEIIGGSVDGTVR 169 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~ 169 (277)
-.+.+.|. |.++|+++..+|+...|++|..+|.|++||+.........+ .....++.+ +.+++..++.+...|...
T Consensus 115 ~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 115 LSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred cccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 66666665 78999999999999999999999999999998754322221 222234444 445667788888999999
Q ss_pred EEEccCCcccc--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCC
Q 023772 170 TFDIRVGRELS--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 170 i~d~~~~~~~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
+|++....... ..+...+....+||++++|+++|.|.+++||+.... +....+.+|. ....+|+||.|+
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~--rWvWdc~FS~dg 270 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ--RWVWDCAFSADG 270 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC--ceEEeeeeccCc
Confidence 99987643221 123446788899999999999999999999999877 6666777874 567889999999
Q ss_pred ceEEeecCCCeEEEEECcCccceeeeccCcce
Q 023772 241 AHVTGGSEDGYIYFWDLVDASVVAKFKAHSLV 272 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 272 (277)
.||++|+.|+.+++|+++.++.+.+..+|-.+
T Consensus 271 ~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred cEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999999999999999999999998544
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-39 Score=273.24 Aligned_cols=243 Identities=23% Similarity=0.391 Sum_probs=210.4
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-------------------------------eeEEEEeccCccE
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-------------------------------IHIKTYKSHGREV 63 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-------------------------------~~~~~~~~h~~~v 63 (277)
.--...++|+.|++|++.||.|-.|-.|++|.+.+. ...+++-+|+++|
T Consensus 375 ~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPV 454 (707)
T KOG0263|consen 375 HNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPV 454 (707)
T ss_pred EEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCce
Confidence 334456999999999999999999999999986521 1234577999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID 143 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 143 (277)
..+.|+|+.++|+++|.|+++++|.+.+..++-.+++|..||+.+.|+|.|-+++|+|.|++-++|...... +..++.
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--PlRifa 532 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--PLRIFA 532 (707)
T ss_pred eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--chhhhc
Confidence 999999999999999999999999999999998999999999999999999999999999999999987644 444555
Q ss_pred cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772 144 SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
+|..-+.++.+. .+++++|+.|+++|+||..++..++ ..+..+|.+++|||+|.+|++|+.|+.|++||+.+++++
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 666655555555 5569999999999999999887544 456789999999999999999999999999999999999
Q ss_pred EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772 220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~ 261 (277)
..+.+|.. .+.+..|+.+|..||+|+.|++|++||+..-.
T Consensus 613 ~~l~~Ht~--ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 613 KQLKGHTG--TIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred hhhhcccC--ceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999954 45666789999999999999999999987643
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=233.09 Aligned_cols=235 Identities=22% Similarity=0.363 Sum_probs=209.6
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
-..-|..++|+|.|++++.||-|....||++.+. ...+.+.+|.+.+.++.|.. ...|+|+|.|.++.+||++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie 174 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIE 174 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcc
Confidence 3456889999999999999999999999998754 34567999999999999987 5789999999999999999
Q ss_pred CCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCc
Q 023772 91 TGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGT 167 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~ 167 (277)
+++.+..|.+|...|.++++.| +++.+++|+-|+..++||+|.+ ...+.+..|..-|.++.+-|+. +++|+.|++
T Consensus 175 ~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINsv~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 175 TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINSVRFFPSGDAFATGSDDAT 252 (343)
T ss_pred cceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccccccceEEEccCCCeeeecCCCce
Confidence 9999999999999999999999 8999999999999999999976 4578888998888888876654 999999999
Q ss_pred EEEEEccCCcccccCC----CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772 168 VRTFDIRVGRELSDDL----GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV 243 (277)
Q Consensus 168 i~i~d~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (277)
.|+||+|..+++.... ..+|++++||-.|++|++|..|.++.+||.-.++.+..+.||.+++ .....+|||..+
T Consensus 253 cRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRv--Scl~~s~DG~av 330 (343)
T KOG0286|consen 253 CRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRV--SCLGVSPDGMAV 330 (343)
T ss_pred eEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCee--EEEEECCCCcEE
Confidence 9999999987765432 3579999999999999999999999999999999999999997654 444578999999
Q ss_pred EeecCCCeEEEEE
Q 023772 244 TGGSEDGYIYFWD 256 (277)
Q Consensus 244 ~sgs~d~~i~iwd 256 (277)
++||.|.++|||.
T Consensus 331 ~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 331 ATGSWDSTLRIWA 343 (343)
T ss_pred EecchhHheeecC
Confidence 9999999999994
No 19
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-36 Score=230.53 Aligned_cols=262 Identities=22% Similarity=0.340 Sum_probs=223.5
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC--CCcEEEEEC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG--DRQIFYWDV 89 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~--d~~v~~wd~ 89 (277)
..++--.+.|+++.|+++|..|++++.|.++++||..++++++++..+...|..++|......++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 345556789999999999999999999999999999999999999998889999999888777877776 899999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEE
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVR 169 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 169 (277)
.+.+.++.|.+|...|+++..+|.+..+++++.|++|++||++...... .+.....++.++.+.+-.+|++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg--~l~~~~~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG--LLNLSGRPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce--EEecCCCcceeECCCCcEEEEecCCCeEE
Confidence 9999999999999999999999999999999999999999999654432 33344556667666666677777777999
Q ss_pred EEEccCCc-cc------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce-eeeeeEecCCCc
Q 023772 170 TFDIRVGR-EL------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS-FKTDCCLTNSDA 241 (277)
Q Consensus 170 i~d~~~~~-~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 241 (277)
+||+|.-. .. .......++.|.|||+|++|+.+...+.+++.|.-+|.....+.++.... ....++++||+.
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 99998642 11 11223578999999999999999999999999999999999998875432 457889999999
Q ss_pred eEEeecCCCeEEEEECcCccceeeecc-CcceeEe
Q 023772 242 HVTGGSEDGYIYFWDLVDASVVAKFKA-HSLVVKL 275 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~v~~ 275 (277)
++++|+.||.|.+|++++++.+.++++ +..++++
T Consensus 246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~ 280 (311)
T KOG1446|consen 246 FVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSC 280 (311)
T ss_pred EEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccc
Confidence 999999999999999999999999998 5666554
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-38 Score=243.48 Aligned_cols=243 Identities=25% Similarity=0.419 Sum_probs=210.0
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...|+||.++|..++|+..|++|++||.|-.+++||..+ .++++...+|...|.++.|-|.+.+|++++.|.+||.|++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~ 222 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWEC 222 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEec
Confidence 456899999999999999999999999999999999876 5678888999999999999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec------------C-
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT------------K- 156 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------------~- 156 (277)
.++.++.+|.+|...|..++.+.|+.++++|+.|.++++|-..+.+.+.. +..|+.++-.+.+. +
T Consensus 223 ~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~--lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 223 DTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAE--LREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred ccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhh--hhccccceEEEEecccccCcchhhccCC
Confidence 99999999999999999999999999999999999999998876533322 22333333333321 1
Q ss_pred ----CeEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccccee
Q 023772 157 ----TEIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSF 230 (277)
Q Consensus 157 ----~~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 230 (277)
..+.+++.|++|++||+.++..+.+. +..-|..++|+|.|+||+++.+|+++++||++++++...+..|...+
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv- 379 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV- 379 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee-
Confidence 25889999999999999999887764 55679999999999999999999999999999999999988886544
Q ss_pred eeeeEecCCCceEEeecCCCeEEEEEC
Q 023772 231 KTDCCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
....|..+-.++++|+-|..+++|..
T Consensus 380 -t~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 -TSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -EEEecCCCCceEEeccccceeeeeec
Confidence 44557777889999999999999975
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-36 Score=241.85 Aligned_cols=246 Identities=24% Similarity=0.453 Sum_probs=214.2
Q ss_pred cccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 7 PRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 7 ~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
+.....+|..|++||.++.|+.+|.||++++.|+++.+||..+|+....|..|..+-..+.|.. +..+++++.|+.|++
T Consensus 265 ~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V 343 (524)
T KOG0273|consen 265 DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHV 343 (524)
T ss_pred CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEE
Confidence 4445667889999999999999999999999999999999999999999999998877888874 468999999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC----------
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---------- 156 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 156 (277)
+-+....++.++.+|.++|+++.|+|.+.+|+|+|.|++++||+..... ...-++.|...++.+.++|
T Consensus 344 ~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 344 CKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--chhhhhhhccceeeEeecCCCCccCCCcC
Confidence 9999999999999999999999999999999999999999999975432 2223445555566655544
Q ss_pred -CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeee
Q 023772 157 -TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD 233 (277)
Q Consensus 157 -~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 233 (277)
..+++++.|.++++||...+.++.. .+..+|.+++|+|+|+++++|+.||.+.+|+.+++++++.+.+. ..+..
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~---~~Ife 498 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT---GGIFE 498 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC---CeEEE
Confidence 3488999999999999999887755 56789999999999999999999999999999999999999875 33566
Q ss_pred eEecCCCceEEeecCCCeEEEEECc
Q 023772 234 CCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 234 ~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
.|++.+|.+|..+.+|+.+++-|++
T Consensus 499 l~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 499 LCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEcCCCCEEEEEecCCCceEEEec
Confidence 7889999999999999999998875
No 22
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-35 Score=239.66 Aligned_cols=263 Identities=19% Similarity=0.346 Sum_probs=209.6
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe---ccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK---SHGREVRDVHVTADNSKLISCGGDRQIFYW 87 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w 87 (277)
...++.|..-|.|++|+|||++++|+|.||++.+||-.+|+.+..+. +|.+.|.++.|+||+++++|+|.|+++|+|
T Consensus 183 k~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIW 262 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIW 262 (603)
T ss_pred eecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEE
Confidence 34567899999999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred ECCCCceeEEe-------------------------------------------ecccCceeEEEEecCCCEEEEEeCCC
Q 023772 88 DVSTGRVIRKF-------------------------------------------RGHESEVNAVKFNEYSSVVVSAGYDQ 124 (277)
Q Consensus 88 d~~~~~~~~~~-------------------------------------------~~h~~~v~~i~~~~~~~~l~s~~~d~ 124 (277)
|+.+.++++++ .+|...|+++..+++++.|++|+.||
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG 342 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG 342 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc
Confidence 99877665443 46999999999999999999999999
Q ss_pred cEEEEeCccCCCcce-------Ee--e-----------------------------------------------------
Q 023772 125 SLRAWDCRSHSTEPI-------QI--I----------------------------------------------------- 142 (277)
Q Consensus 125 ~i~iwd~~~~~~~~~-------~~--~----------------------------------------------------- 142 (277)
.|.-|+...+...++ ++ +
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv 422 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVV 422 (603)
T ss_pred eEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEE
Confidence 999999754211000 00 0
Q ss_pred ---------c----------cccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc----cccCCCCCeeEEEEeCCCCEE
Q 023772 143 ---------D----------SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE----LSDDLGQPVNCISMSNDGNCI 199 (277)
Q Consensus 143 ---------~----------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~----~~~~~~~~v~~~~~s~~~~~l 199 (277)
. .....+.++.+++..++.|+.|+++++|.+..... ....+..+++++++||++.||
T Consensus 423 ~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yl 502 (603)
T KOG0318|consen 423 ACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYL 502 (603)
T ss_pred EecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEE
Confidence 0 00111223334456688999999999999976442 233567899999999999999
Q ss_pred EEEecCCeEEEEECCCCceEE-EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCcceeEe
Q 023772 200 LASCLDSTLRLLDRSTGELLQ-EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHSLVVKL 275 (277)
Q Consensus 200 ~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~v~~ 275 (277)
+++...+.+.+||+.+.+... .+.-|.. .+...+++|++.++|+||.|.+|.||+++...- +....+|..-|.-
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHta--kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~ 578 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTA--KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS 578 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeee--eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence 999999999999998876633 2333543 345567899999999999999999999987533 3434478765554
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.4e-36 Score=240.24 Aligned_cols=247 Identities=19% Similarity=0.328 Sum_probs=215.9
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..|++++|+.+|..|++|+.||.+|||+. +|.++.++..|.+||.++.|+.++.+|++++.|+++-+||..+++....|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 56999999999999999999999999995 57788999999999999999999999999999999999999999999999
Q ss_pred ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC
Q 023772 99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG 176 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~ 176 (277)
.-|..+--.+.|-.+ ..+++++.|+.|+++.+... .|+..+..|..+|.++.++++ .|++++.|+++++|.+...
T Consensus 315 ~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeccCCccceEEecC-ceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 999988667888654 47788999999999988654 456666779999999999864 4899999999999998766
Q ss_pred ccccc--CCCCCeeEEEEeCC---------CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 177 RELSD--DLGQPVNCISMSND---------GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 177 ~~~~~--~~~~~v~~~~~s~~---------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
..... .+...|..+.|+|+ +..+++++.|+++++||...+.++..|+.|..+++. .+++|+++++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVys--vafS~~g~ylAs 469 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYS--VAFSPNGRYLAS 469 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEE--EEecCCCcEEEe
Confidence 54433 35567888999885 457899999999999999999999999999766554 568999999999
Q ss_pred ecCCCeEEEEECcCccceeeeccCcc
Q 023772 246 GSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 246 gs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
|+.||.|.+|+++++++++.+++-..
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred cCCCCeeEeccccchheeEeecCCCe
Confidence 99999999999999999999987543
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-37 Score=252.81 Aligned_cols=252 Identities=18% Similarity=0.326 Sum_probs=227.3
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.+..|+..|.++.|+|...+++++-..|.|.|||.++...++.|+...-||+++.|.+..+.+++|+.|..|++|+.+++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVR 169 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~ 169 (277)
+.+.+|.+|..-|++++.+|...+++|+|.|-+|++||-... -...+++.+|...++.++++|+ .+++++.|++|+
T Consensus 88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~-wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE-WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc-eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999998754 3467788999999999999874 499999999999
Q ss_pred EEEccCCccccc--CCCCCeeEEEEeCCC--CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 170 TFDIRVGRELSD--DLGQPVNCISMSNDG--NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 170 i~d~~~~~~~~~--~~~~~v~~~~~s~~~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
+|.+.+.....+ .+..-|+|+++-+.| .+|++|+.|.++++||.++..|++++.||.+.+ ...+|.|.-.++++
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv--s~v~fhp~lpiiis 244 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV--SFVFFHPELPIIIS 244 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc--eEEEecCCCcEEEE
Confidence 999987765444 345579999998755 599999999999999999999999999997643 34578898899999
Q ss_pred ecCCCeEEEEECcCccceeeec
Q 023772 246 GSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 246 gs~d~~i~iwd~~~~~~~~~~~ 267 (277)
||+||++|||+..+.++++.+.
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred ecCCccEEEecCcceehhhhhh
Confidence 9999999999999988877665
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.4e-38 Score=247.60 Aligned_cols=253 Identities=22% Similarity=0.320 Sum_probs=213.8
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
-+.+|..++|.|+|+.|++|+.-|.+.+|+..+......+++|..+|+++.|++++.++++|+.+|.||+|+..-..+..
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~ 174 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI 174 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence 45689999999999999999999999999986554445567899999999999999999999999999999987655544
Q ss_pred EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEcc
Q 023772 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIR 174 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~ 174 (277)
....|...|++++|+|++..|+|||.||+|+|||......+.+ +.+|.--+.++.+.|.. +++|+.|..|++||.+
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~v--L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERV--LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhe--eccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 4445569999999999999999999999999999887655444 46666677778777654 8999999999999999
Q ss_pred CCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC-CCceEEeecCCCe
Q 023772 175 VGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-SDAHVTGGSEDGY 251 (277)
Q Consensus 175 ~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~sgs~d~~ 251 (277)
+++++... +...|..+.|+|++++|+++|.|..+++||+++.+.++.+++|.... .+..++| ...++.+|+.||.
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv--~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDV--TSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhh--eeeccccccccceeeccCCCc
Confidence 99988764 45689999999999999999999999999999989999999997654 3344566 4567889999999
Q ss_pred EEEEECcCccceeeec-cCccee
Q 023772 252 IYFWDLVDASVVAKFK-AHSLVV 273 (277)
Q Consensus 252 i~iwd~~~~~~~~~~~-~h~~~v 273 (277)
|..|.+...+.+..+. +|...|
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred eEEEeccccccccCCCcccccce
Confidence 9999999666666665 777655
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4e-35 Score=235.78 Aligned_cols=261 Identities=32% Similarity=0.535 Sum_probs=223.4
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
..+++|.++|.+++|+|+++++++++.|+.+++|+..++.....+..|...+..+.|.++++++++++.|+.+++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45679999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEE
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVR 169 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~ 169 (277)
++.+..+..|...+.++.+.++++++++++.|+.+.+||++.. .....+..+...+..+.+.+ ..+++++.|+.++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc--EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 8888889999999999999999889998888999999999743 23444555667788888876 3355666699999
Q ss_pred EEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772 170 TFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 170 i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
+||++.++.... .+...+.++.|+|+++.+++++.|+.+++||++.++.+..+..|.. ......+++++.++++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEc
Confidence 999987654432 3445799999999999999999999999999999888888866643 345567888888899988
Q ss_pred CCCeEEEEECcCccceeeeccCcceeEee
Q 023772 248 EDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 248 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
.|+.|++||+.+++.+..+++|...|..+
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~ 267 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSL 267 (289)
T ss_pred CCCcEEEEEcCCceeEEEccccCCcEEEE
Confidence 89999999999999999999988766543
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-37 Score=259.86 Aligned_cols=203 Identities=26% Similarity=0.504 Sum_probs=187.8
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
...|.||.+||..+.|+|+.++|+|||+|+++|+|.+.+..++-.+++|..||+.+.|+|-|=+++|+|.|++.++|...
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i 168 (277)
...+.+.|.+|.+.|.++.|+|+..+++|||.|.++++||..++.. +.++.+|..++.++.+++. .+++|+.|+.|
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 9999999999999999999999999999999999999999987654 6667889999998888764 59999999999
Q ss_pred EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
.+||+..++.+.. .+...|.++.|+.+|..|++|+.|.+|++||+..
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999876543 3466899999999999999999999999999854
No 28
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-36 Score=256.37 Aligned_cols=247 Identities=29% Similarity=0.537 Sum_probs=208.2
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcC-CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNP-HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...+.+|...|..++|+|+++++++++.|+++||||+ ..+..++++++|...|++++|+|+++++++|+.|++|++||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 4456899999999999999999999999999999999 556899999999999999999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC--cEEEEEecC--CeEEEeecC
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD--SVMSVCLTK--TEIIGGSVD 165 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~g~~d 165 (277)
+++++++.+.+|..+|++++|+++++++++++.|+.|++||...........+..... .+..+.+++ .+++++..|
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999999998765211122222222 466676654 569999999
Q ss_pred CcEEEEEccCCcccccCCC---C--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 166 GTVRTFDIRVGRELSDDLG---Q--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 166 ~~i~i~d~~~~~~~~~~~~---~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
+.+++||++.+........ . .+.+..+++.+.++++|+.|+.|++||..++..+..+.+|. ......+.+++..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCc
Confidence 9999999997765443222 2 34445667899999999999999999999999899999884 3344566778888
Q ss_pred ceEEeec--CCCeEEEEECc
Q 023772 241 AHVTGGS--EDGYIYFWDLV 258 (277)
Q Consensus 241 ~~l~sgs--~d~~i~iwd~~ 258 (277)
.++++++ .|+.+++|...
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999887 79999999764
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.1e-36 Score=249.81 Aligned_cols=253 Identities=21% Similarity=0.378 Sum_probs=215.1
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.++||...+++++++|||++++||++||.|||||...+-|..+|..|...|+.+.|+..++.++++|-||+|+.||+...
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecc-cCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcE
Q 023772 93 RVIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTV 168 (277)
Q Consensus 93 ~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i 168 (277)
+.-++|..- +.+..+++..|.|.++..|+.|. .|++|+.++++ ...++.+|.++|..++++ +..+++|+.|++|
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq--llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ--LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV 502 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe--eeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence 988888743 34557888889999999998875 49999998764 466788999999876665 5669999999999
Q ss_pred EEEEccCCc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc------------------ccc
Q 023772 169 RTFDIRVGR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH------------------ICK 228 (277)
Q Consensus 169 ~i~d~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~ 228 (277)
|+||+-... .-.....+.+..++|+|+|+.|+++..||.|.+||...+.....+.+. ...
T Consensus 503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~ 582 (893)
T KOG0291|consen 503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKG 582 (893)
T ss_pred EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccC
Confidence 999986542 112234567899999999999999999999999998776554333321 111
Q ss_pred eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
...+..++++||.++.+|+..+.|++|++.++.++++++
T Consensus 583 K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 583 KTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred CceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEE
Confidence 344667899999999999999999999999999999987
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=6.3e-38 Score=242.11 Aligned_cols=233 Identities=22% Similarity=0.390 Sum_probs=201.0
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
.....|.|+++.. ..++||..|.+|+|||.++-.+++.+.+|.+.|.|+.+. .+.|++||.|.+|++||+++++++
T Consensus 195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred ccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 4567899999864 478999999999999999999999999999999999995 568999999999999999999999
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
.++-+|...|..+.|+. .+++|++.|.++.+||+..+..... ..+.+|...+..+.++..++++++.|++|++|++.
T Consensus 271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEecc
Confidence 99999999999999985 5999999999999999976543221 22457888899999999999999999999999999
Q ss_pred CCcccccCCCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772 175 VGRELSDDLGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252 (277)
Q Consensus 175 ~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 252 (277)
+++.+....++ .|-|+.+ .|+++++|+.|.+|++||...|.+++.+.||+.... |+--+++.+++|..||.|
T Consensus 349 t~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvR----ciRFd~krIVSGaYDGki 422 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR----CIRFDNKRIVSGAYDGKI 422 (499)
T ss_pred ceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhh----heeecCceeeeccccceE
Confidence 99877765544 5666655 688999999999999999999999999999975432 233468889999999999
Q ss_pred EEEECcCc
Q 023772 253 YFWDLVDA 260 (277)
Q Consensus 253 ~iwd~~~~ 260 (277)
++||+..+
T Consensus 423 kvWdl~aa 430 (499)
T KOG0281|consen 423 KVWDLQAA 430 (499)
T ss_pred EEEecccc
Confidence 99998775
No 31
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.9e-37 Score=243.78 Aligned_cols=268 Identities=27% Similarity=0.439 Sum_probs=227.7
Q ss_pred CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe--eEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772 5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI--HIKTYKSHGREVRDVHVTADNSKLISCGGDR 82 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~ 82 (277)
.+|..-...+..|.+.|..+.|-++...|++|+.|..|++|+...++ ...++.+..++|++++|.+++..+++++.|+
T Consensus 162 ~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~ 241 (459)
T KOG0288|consen 162 TLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK 241 (459)
T ss_pred ccchhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC
Confidence 35666677889999999999999999999999999999999976655 6778888889999999999999999999999
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (277)
.+++|++...+...++.+|+..|+++.|......+++|+.|.+|++||+....+.... .....+..+..++..+++|
T Consensus 242 ~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~---l~~S~cnDI~~~~~~~~Sg 318 (459)
T KOG0288|consen 242 NLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV---LPGSQCNDIVCSISDVISG 318 (459)
T ss_pred ceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc---cccccccceEecceeeeec
Confidence 9999999999999999999999999999888777999999999999999864332221 1233455566667778999
Q ss_pred ecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc--ccceeeeeeEecCC
Q 023772 163 SVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH--ICKSFKTDCCLTNS 239 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 239 (277)
..|++||+||.+....... ..++.|+++..+++|..+++++.|.++.+.|+++.+..+.|... ....-....+|||+
T Consensus 319 H~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 319 HFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred ccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 9999999999998765544 45679999999999999999999999999999999888888753 22223566789999
Q ss_pred CceEEeecCCCeEEEEECcCccceeeecc-Ccc-eeEe
Q 023772 240 DAHVTGGSEDGYIYFWDLVDASVVAKFKA-HSL-VVKL 275 (277)
Q Consensus 240 ~~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~-~v~~ 275 (277)
+.|+++||.||.|+||++.+++++++++. ++. +|..
T Consensus 399 ~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 399 GSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred CceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEE
Confidence 99999999999999999999999999995 333 4543
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-35 Score=246.51 Aligned_cols=263 Identities=20% Similarity=0.329 Sum_probs=215.5
Q ss_pred cCCccccc-cceeeccCCcEEEEEEeCCCCEEEEEe-CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772 3 VSDLPRTE-ANVLKGHEGAVLAARFNGDGNYCLSCG-KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 3 ~~~~~~~~-~~~l~~H~~~V~~~~~~~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
+..+|... .+.|.--..+|..+.|+..|++|+-|+ .=|.+-||+.++...+...++|...+++++++|||++|+||+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 34567654 455666778999999999999999764 4589999999999888999999999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEecCCeE
Q 023772 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLTKTEI 159 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 159 (277)
||+||+||..++-|..+|..|++.|+.+.|+..++.+++.+.||+|+.||+..-..-+..+ ....+..+.++.+++..+
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV 450 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELV 450 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEE
Confidence 9999999999999999999999999999999999999999999999999986432211111 122233445555556667
Q ss_pred EEeecCC-cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeE
Q 023772 160 IGGSVDG-TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCC 235 (277)
Q Consensus 160 ~~g~~d~-~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~ 235 (277)
..|+.|. .|.+|++.+|+.+. ..|..||.+++|+|.++.|+++|.|.+||+||+-.. ..+.++.. ....+...
T Consensus 451 ~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i---~sdvl~vs 527 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI---RSDVLAVS 527 (893)
T ss_pred EeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee---ccceeEEE
Confidence 7777776 49999999998754 456789999999999999999999999999998433 23334432 12356678
Q ss_pred ecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
|.|+|+-+++++.||+|-+||+.++.....+.+
T Consensus 528 frPdG~elaVaTldgqItf~d~~~~~q~~~Idg 560 (893)
T KOG0291|consen 528 FRPDGKELAVATLDGQITFFDIKEAVQVGSIDG 560 (893)
T ss_pred EcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence 999999999999999999999999888766654
No 33
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.5e-35 Score=230.85 Aligned_cols=266 Identities=23% Similarity=0.370 Sum_probs=217.3
Q ss_pred CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC---EEEEEeC
Q 023772 4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS---KLISCGG 80 (277)
Q Consensus 4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~ 80 (277)
+.++++.+..-..|.+-|.++... +++|+||+.||++|+||. .|+..+++.+|.+++.+++|.-.+. .|+++|.
T Consensus 91 ~~~~aP~pl~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 91 EAITAPKPLQCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred EecCCCCccccccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 334333333334589999888877 789999999999999995 6889999999999999888865444 5999999
Q ss_pred CCcEEEEECCCCce----eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-----------------------
Q 023772 81 DRQIFYWDVSTGRV----IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS----------------------- 133 (277)
Q Consensus 81 d~~v~~wd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~----------------------- 133 (277)
|.++++|-.+.++. +...++|...|-++...+++.++++|+.|..+++|+...
T Consensus 168 Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~ 247 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEG 247 (423)
T ss_pred CceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcc
Confidence 99999999876643 344569999999999999999999999999999999321
Q ss_pred CCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772 134 HSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLL 211 (277)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~w 211 (277)
....++..+.+|..+|.++.+.+. .+.+++.|.+|+.||+.++...... .+.+.+|++.+|....|++|+.|+.|++|
T Consensus 248 ~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~ 327 (423)
T KOG0313|consen 248 GTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLW 327 (423)
T ss_pred cccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeec
Confidence 112356677889999999998764 4889999999999999998876654 45789999999999999999999999999
Q ss_pred ECCCC--c-eEEEEeccccceeeeeeEecCCC-ceEEeecCCCeEEEEECcCcc-ceeeeccCcceeE
Q 023772 212 DRSTG--E-LLQEYKGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWDLVDAS-VVAKFKAHSLVVK 274 (277)
Q Consensus 212 d~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~v~ 274 (277)
|.+++ + ..+.|.+|.+ ....+.++|.+ ..+++||.|+++++||++.-. .+..+.+|..-|-
T Consensus 328 DPR~~~gs~v~~s~~gH~n--wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl 393 (423)
T KOG0313|consen 328 DPRTGDGSVVSQSLIGHKN--WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVL 393 (423)
T ss_pred CCCCCCCceeEEeeecchh--hhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEE
Confidence 99875 3 3467889976 44555667754 558899999999999999987 8999999976554
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-35 Score=217.26 Aligned_cols=248 Identities=26% Similarity=0.445 Sum_probs=209.2
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
-.|+||+.|++-+.|+.+|++|+||+.|.+..+|-..+|+.+.++.+|.+.|++++++.+.++++||+.|.++++||+++
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeC-----CCcEEEEeCccCC-----CcceEeeccccCcEEEEEecC--CeE
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-----DQSLRAWDCRSHS-----TEPIQIIDSFQDSVMSVCLTK--TEI 159 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-----d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~ 159 (277)
|+++.+++ -..+|..+.|++++++++.+.. -+.|.++|++... .++...+..+...+....+.+ ..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999887 5789999999999999887753 4789999987432 234555555566677766664 559
Q ss_pred EEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc----------
Q 023772 160 IGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI---------- 226 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------- 226 (277)
++|..||.|.+||.++++++.. .+...|+.|.++++..+++++|.|.+-++||.++-+++++|.-..
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~ 242 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPL 242 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccc
Confidence 9999999999999999876543 456789999999999999999999999999988766655553110
Q ss_pred -------------------------------------------cceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772 227 -------------------------------------------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 227 -------------------------------------------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
+...+...+++|+|+.-++|++||.||+.-.+..
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 0124456789999999999999999999866543
No 35
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.9e-36 Score=253.89 Aligned_cols=241 Identities=22% Similarity=0.452 Sum_probs=196.9
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----------------------------------------------
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR---------------------------------------------- 49 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~---------------------------------------------- 49 (277)
+|+++|.++.|++||+||||||+|+.||||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999996432
Q ss_pred --------------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec-CC
Q 023772 50 --------------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YS 114 (277)
Q Consensus 50 --------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~ 114 (277)
.+++..|.+|.+.|.++.|+.+ ++|+++|.|++|++|++...++++.|. |.+-|++++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 0122356789999999999954 699999999999999999999999887 999999999998 57
Q ss_pred CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCccc-----cc-----C
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGREL-----SD-----D 182 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~-----~~-----~ 182 (277)
++|++|+.||.|+||++.... +........-|+++++. ++..+.|+.+|.+++|+.+..+.. .. .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~ 499 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK 499 (712)
T ss_pred CcEeecccccceEEeecCcCe---eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence 899999999999999997543 22233334566666665 556999999999999998754322 11 1
Q ss_pred CCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772 183 LGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 183 ~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~ 261 (277)
....|+.+.|.|.. ..++..+.|..|||||.++..++..|+|..+..-...+.|+.||++|++|++|..||+|+.....
T Consensus 500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 12379999998754 35788889999999999999999999987655555667889999999999999999999985433
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=9.2e-37 Score=235.70 Aligned_cols=238 Identities=24% Similarity=0.494 Sum_probs=199.8
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..+|.||.+.|+|+.|.. +.|+|||.|.+|+|||.++|++++++-+|...|..+.|+ +.+++|+|.|.++.+||+.
T Consensus 230 ~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~ 305 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMA 305 (499)
T ss_pred HHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence 456889999999999874 599999999999999999999999999999999999997 5799999999999999997
Q ss_pred CCc---eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772 91 TGR---VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT 167 (277)
Q Consensus 91 ~~~---~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 167 (277)
.-. +.+.+.+|...|+.++|.. +++++++.|.+|++|+..+. +.+.++.+|+..+.+....+..+++|+.|.+
T Consensus 306 sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~--efvRtl~gHkRGIAClQYr~rlvVSGSSDnt 381 (499)
T KOG0281|consen 306 SPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTC--EFVRTLNGHKRGIACLQYRDRLVVSGSSDNT 381 (499)
T ss_pred CchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccce--eeehhhhcccccceehhccCeEEEecCCCce
Confidence 543 4566789999999999975 59999999999999998764 5567788899999888888888999999999
Q ss_pred EEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE---------EEEeccccceeeeeeEe
Q 023772 168 VRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL---------QEYKGHICKSFKTDCCL 236 (277)
Q Consensus 168 i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~---------~~~~~~~~~~~~~~~~~ 236 (277)
|++||+..|..+... +++-|.|+.|+ .+.+++|+.||+|++||+.++..- .....|...++. +
T Consensus 382 IRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr----L 455 (499)
T KOG0281|consen 382 IRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR----L 455 (499)
T ss_pred EEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEE----E
Confidence 999999999876654 45679999995 457999999999999999776432 222234333333 3
Q ss_pred cCCCceEEeecCCCeEEEEECcCccc
Q 023772 237 TNSDAHVTGGSEDGYIYFWDLVDASV 262 (277)
Q Consensus 237 ~~~~~~l~sgs~d~~i~iwd~~~~~~ 262 (277)
.-|+..+++++.|.+|.|||..++-.
T Consensus 456 QFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 456 QFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred eecceEEEeccCCCeEEEEEcCCCCc
Confidence 44778899999999999999988644
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=236.87 Aligned_cols=243 Identities=23% Similarity=0.395 Sum_probs=207.0
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.++++|..+|+++.|+++|.+++||+.||.||+|+..... ++.+.+ |...|++++|+|+..+++|+|.|++|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 4568999999999999999999999999999999987654 444444 45899999999999999999999999999998
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i 168 (277)
..+.-+.+.+|.-.|.+++|+|...+++++|.|..|++||.+++. .+..+..|...|..+.+.++ .|++++.|..+
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~ 288 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSC 288 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccCCceE
Confidence 887777889999999999999999999999999999999999865 45567788889999988764 59999999999
Q ss_pred EEEEccCCccccc--CCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEe-ccccceeeeeeEecCCCceEE
Q 023772 169 RTFDIRVGRELSD--DLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 244 (277)
++||+++.+++.. .+...++++.|+|- .+.|.+|+.||.|..|.+...+++..+. +|.. .+.+..+.|-|.+|+
T Consensus 289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~--~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDG--EIWSLAYHPLGHILA 366 (464)
T ss_pred EEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCccccc--ceeeeeccccceeEe
Confidence 9999997776654 35668999999995 4577889999999999998656655443 3433 345667889999999
Q ss_pred eecCCCeEEEEECcC
Q 023772 245 GGSEDGYIYFWDLVD 259 (277)
Q Consensus 245 sgs~d~~i~iwd~~~ 259 (277)
+|+.|.++++|....
T Consensus 367 tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 367 TGSNDRTVRFWTRNR 381 (464)
T ss_pred ecCCCcceeeeccCC
Confidence 999999999997543
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-35 Score=246.57 Aligned_cols=252 Identities=20% Similarity=0.332 Sum_probs=214.0
Q ss_pred CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCC-CEEEEE
Q 023772 4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADN-SKLISC 78 (277)
Q Consensus 4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~~l~t~ 78 (277)
...|....+++.||+..|.++....+|.+|+|||.|.++++|.++.+ .++....+|...|.+++++..+ ..|+++
T Consensus 351 y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsv 430 (775)
T KOG0319|consen 351 YTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSV 430 (775)
T ss_pred EecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEe
Confidence 35566667789999999999997778899999999999999976433 3456778999999999997655 478999
Q ss_pred eCCCcEEEEECCCCce-----e----EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE
Q 023772 79 GGDRQIFYWDVSTGRV-----I----RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV 149 (277)
Q Consensus 79 s~d~~v~~wd~~~~~~-----~----~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 149 (277)
|.|+++|+|++...+. + .+...|...|++++++|+.++++|||.|++.++|++.+ ....-.+.+|...+
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~--~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ--LRLLGVLSGHTRGV 508 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccC--ceEEEEeeCCccce
Confidence 9999999999865221 1 23457999999999999999999999999999999973 44556678999999
Q ss_pred EEEEecCC--eEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772 150 MSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 150 ~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 225 (277)
.++.|++. .+++++.|++|+||.+.+..++.+. +...|..+.|-.+|++|++++.||.|++|+++++.++.++..|
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H 588 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH 588 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence 99999886 6999999999999999998877664 4457888999999999999999999999999999999999999
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
..+.+.+. .++.+.++++|+.||.|.+|.=.+
T Consensus 589 ~DrvWaL~--~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 589 NDRVWALS--VSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cceeEEEe--ecCccceeEecCCCeEEEEeecCc
Confidence 87765543 477788999999999999996443
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.7e-33 Score=252.92 Aligned_cols=243 Identities=21% Similarity=0.337 Sum_probs=195.7
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----e----eEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcE
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----I----HIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQI 84 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~----~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v 84 (277)
+.+|.+.|.+++|+++|++++|||.|++|+|||..+. . ....+. +...+.+++|++. +.+|++++.|++|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 3459999999999999999999999999999997531 1 122333 3468999999874 6789999999999
Q ss_pred EEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEII 160 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 160 (277)
++||+.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||++.... ...+.. ...+..+.+ ++..++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~-~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS--IGTIKT-KANICCVQFPSESGRSLA 634 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE--EEEEec-CCCeEEEEEeCCCCCEEE
Confidence 9999999999999999999999999996 688999999999999999976432 333332 235566655 356799
Q ss_pred EeecCCcEEEEEccCCcc-c--ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC------CceEEEEeccccceee
Q 023772 161 GGSVDGTVRTFDIRVGRE-L--SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST------GELLQEYKGHICKSFK 231 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~~~~-~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~ 231 (277)
+|+.|+.|++||++..+. + ...+...|.++.|. ++.+|++++.|++|++||+.. .+++..+.+|... .
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~--i 711 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV--K 711 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC--e
Confidence 999999999999987542 2 22455689999997 678899999999999999974 3567788888543 3
Q ss_pred eeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772 232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~ 263 (277)
...++++++.++++|+.|+.|++|+......+
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 44568899999999999999999998765443
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=9.5e-34 Score=242.01 Aligned_cols=249 Identities=25% Similarity=0.477 Sum_probs=211.2
Q ss_pred cccce-eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772 9 TEANV-LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW 87 (277)
Q Consensus 9 ~~~~~-l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w 87 (277)
+.... +.||.+.|.+++|...+.+|++|+.|.++|+||..+|.+...+.+|...+.++...+ .++++||.|.+|++|
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVW 316 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEE
Confidence 33344 789999999999998889999999999999999999999999999999999988864 578889999999999
Q ss_pred ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecCC
Q 023772 88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVDG 166 (277)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~ 166 (277)
+++++.++..+.+|..+|+++..+ +.++++|+.|++|++||.... +.+..+.+|...|.++.+.+ ..+++|+.|+
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~--~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~ 392 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG--KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT 392 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc--eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence 999999999999999999999998 779999999999999999854 45667788999999999998 8899999999
Q ss_pred cEEEEEccCC-cccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeEecCCCce
Q 023772 167 TVRTFDIRVG-RELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCCLTNSDAH 242 (277)
Q Consensus 167 ~i~i~d~~~~-~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 242 (277)
+|++||+++. +++..... .-+.. +...+++|++++.|++|++||..++++++.+.+. .... .. +......
T Consensus 393 ~IkvWdl~~~~~c~~tl~~h~~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v--~~--l~~~~~~ 466 (537)
T KOG0274|consen 393 TIKVWDLRTKRKCIHTLQGHTSLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGV--SA--LALGKEE 466 (537)
T ss_pred ceEeecCCchhhhhhhhcCCcccccc--cccccceeEeccccccEEEeecccCceeeeeccCCcccE--EE--eecCcce
Confidence 9999999998 66554433 33433 3446788999999999999999999999999883 2222 22 2222467
Q ss_pred EEeecCCCeEEEEECcCccceeeeccC
Q 023772 243 VTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 243 l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
+++++.||.+++||++++.++..+-.+
T Consensus 467 il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 467 ILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred EEEEecCCeeEEEecccCchhhhhhhc
Confidence 888899999999999999998876333
No 41
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=218.86 Aligned_cols=246 Identities=17% Similarity=0.261 Sum_probs=203.3
Q ss_pred ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
.+..+.||++.|+++.|+.+|.+||||+.+|.|+||...++.....+......+.-+.|+|....|+.|+.||.+-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 45668899999999999999999999999999999999999888888666678889999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-------------------ec-------
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-------------------ID------- 143 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------~~------- 143 (277)
.++...+.+.+|..++++=.|.|+|++++++..||+|++||+.+.++..... +.
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 9887888899999999999999999999999999999999998654321111 00
Q ss_pred ----cccCcEEEEE----------------------ecC--CeEEEeecCCcEEEEEccCCccc-ccCCCCCeeEEEEeC
Q 023772 144 ----SFQDSVMSVC----------------------LTK--TEIIGGSVDGTVRTFDIRVGREL-SDDLGQPVNCISMSN 194 (277)
Q Consensus 144 ----~~~~~~~~~~----------------------~~~--~~~~~g~~d~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~ 194 (277)
.....+..+. ++. ...++|+.||+|.|||+...+.. ...+..+|..+.|-+
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~ 337 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN 337 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC
Confidence 0001111111 011 12578999999999999765422 224567899999998
Q ss_pred CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 195 DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 195 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
..+|++++.||.|+.||.++|++..+|.||.. .+...+++|+.++++++|.|++.+++++.
T Consensus 338 -t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~--~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 338 -TDYLLTACANGKVRQWDARTGQLKFTYTGHQM--GILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred -cchheeeccCceEEeeeccccceEEEEecCch--heeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 67899999999999999999999999999964 45777889999999999999999999875
No 42
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.2e-34 Score=215.44 Aligned_cols=241 Identities=27% Similarity=0.438 Sum_probs=205.5
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~ 89 (277)
...+++|+++|..+.|.+|++.++|||.|.+++.||.++|++++.+++|..-|+++.-..-|. ++.+++.|+++|+||+
T Consensus 83 ~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~ 162 (338)
T KOG0265|consen 83 FWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI 162 (338)
T ss_pred eeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEee
Confidence 456889999999999999999999999999999999999999999999999999999554444 5678899999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCc
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGT 167 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~ 167 (277)
.+.+.++++. .+-+++++.|..++..+++|+-|+.|++||++... ...++.+|.+.|+.+..++. .+.+-+.|.+
T Consensus 163 R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d--~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t 239 (338)
T KOG0265|consen 163 RKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND--GLYTLSGHADTITGLSLSRYGSFLLSNSMDNT 239 (338)
T ss_pred cccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc--ceEEeecccCceeeEEeccCCCccccccccce
Confidence 9998888775 35688999999999999999999999999998653 46678899999998887754 4888899999
Q ss_pred EEEEEccCC----ccccc--C--C--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772 168 VRTFDIRVG----RELSD--D--L--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT 237 (277)
Q Consensus 168 i~i~d~~~~----~~~~~--~--~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
+++||++-. +++.. . + +......+|+|++..+.+|+.|+.+++||......+..+.||... +..+.|+
T Consensus 240 vrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs--vn~~~Fh 317 (338)
T KOG0265|consen 240 VRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS--VNEVDFH 317 (338)
T ss_pred EEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee--EEEeeec
Confidence 999999742 21211 1 1 123445689999999999999999999999988999999999754 4556799
Q ss_pred CCCceEEeecCCCeEEEEE
Q 023772 238 NSDAHVTGGSEDGYIYFWD 256 (277)
Q Consensus 238 ~~~~~l~sgs~d~~i~iwd 256 (277)
|...++.+++.|.+|++=.
T Consensus 318 p~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 318 PTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCcEEEEeccCceeEeec
Confidence 9999999999999998743
No 43
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=218.81 Aligned_cols=260 Identities=16% Similarity=0.238 Sum_probs=212.7
Q ss_pred ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
..+.+..|+++|.+++.+|+.++++|||.|....+|++.++.....+.+|...|+++.|+.++.+|+||..+|.|++|..
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEeecCCc
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGT 167 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~~ 167 (277)
.++.....+..--..+.-+.|+|....|+.|+.||.+.+|.+.+. ...+++.++..++..=.+ +++.+++|..||+
T Consensus 136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~--~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ--ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc--ceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 999988888755566666999999999999999999999998764 445667777777765444 4667999999999
Q ss_pred EEEEEccCCcccccCC-----------------------------------------------------CCCeeEE---E
Q 023772 168 VRTFDIRVGRELSDDL-----------------------------------------------------GQPVNCI---S 191 (277)
Q Consensus 168 i~i~d~~~~~~~~~~~-----------------------------------------------------~~~v~~~---~ 191 (277)
|++||+.+++.+.... .+.+.|+ .
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 9999998775431100 0012222 3
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 192 ~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
++..-...++|+-||+|-|||+...++...+ .|... ++.+.+-+ ..+|++++.||.||.||.++|+++.++.||..
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~--V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~ 369 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDG--VTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM 369 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheec-cCCCc--eEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch
Confidence 3444456788999999999999877665444 34333 45555555 67899999999999999999999999999998
Q ss_pred eeEe
Q 023772 272 VVKL 275 (277)
Q Consensus 272 ~v~~ 275 (277)
.|..
T Consensus 370 ~Il~ 373 (399)
T KOG0296|consen 370 GILD 373 (399)
T ss_pred heeE
Confidence 7753
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.3e-33 Score=241.09 Aligned_cols=255 Identities=26% Similarity=0.441 Sum_probs=220.9
Q ss_pred cceeec-cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 11 ANVLKG-HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 11 ~~~l~~-H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
...+.+ |...+.+..|. +.++++++.|++|++||..++..+.. +.+|.+.|+++++...+.++++|+.|.++++||
T Consensus 200 ~~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd 277 (537)
T KOG0274|consen 200 YKVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWD 277 (537)
T ss_pred ceeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEe
Confidence 344554 56678888888 56899999999999999999998888 999999999999998889999999999999999
Q ss_pred CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772 89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV 168 (277)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 168 (277)
..+|++..++.+|.+.|.++...+ ..+.+|+.|.+|++|++.++. .+..+..|...|.++..+...+++|+.|++|
T Consensus 278 ~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 278 CSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred cCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc--eEEEeccccccEEEEEecCCEEEEEecCceE
Confidence 999999999999999998877664 578889999999999998543 4555566899999999999999999999999
Q ss_pred EEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 169 RTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 169 ~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
++||..+++.+... +...|.++.+.+. +.+++|+.|++|++||+.+. +++.++.+|...+ ..+...++++.+
T Consensus 354 ~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v----~~l~~~~~~Lvs 428 (537)
T KOG0274|consen 354 KVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV----SSLLLRDNFLVS 428 (537)
T ss_pred EEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc----cccccccceeEe
Confidence 99999988876553 5568999988765 78999999999999999999 9999999986433 233456889999
Q ss_pred ecCCCeEEEEECcCccceeeecc-CcceeEee
Q 023772 246 GSEDGYIYFWDLVDASVVAKFKA-HSLVVKLL 276 (277)
Q Consensus 246 gs~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~ 276 (277)
++.|++|++||..++++++++++ |...|.++
T Consensus 429 ~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l 460 (537)
T KOG0274|consen 429 SSADGTIKLWDAEEGECLRTLEGRHVGGVSAL 460 (537)
T ss_pred ccccccEEEeecccCceeeeeccCCcccEEEe
Confidence 99999999999999999999999 66777665
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=6.9e-35 Score=216.02 Aligned_cols=262 Identities=25% Similarity=0.389 Sum_probs=227.4
Q ss_pred cccceeeccCCcEEEEEEeC---CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 9 TEANVLKGHEGAVLAARFNG---DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~---~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
+.+.+..||..||..++|+| +|-+|+|++.|+.--+-+-.+|..+.+|++|.+.|++..+..+-.+.++++.|-+.|
T Consensus 5 ~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftak 84 (334)
T KOG0278|consen 5 QTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAK 84 (334)
T ss_pred cCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhh
Confidence 34556789999999999985 889999999999999999999999999999999999999998888899999999999
Q ss_pred EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee
Q 023772 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS 163 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 163 (277)
+||.-+|..+.+|. |...|.+++|+.|.++|+||+.+.-+++||++.... +...+.++...+..+.+ ..+.+++.+
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSa 162 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSA 162 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeec
Confidence 99999999998887 899999999999999999999999999999986544 33445677777766655 455688889
Q ss_pred cCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772 164 VDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (277)
.|+++|+||.+++..+.. ....+|+++.++++|.+|. -...+.|++||..+..+++.+..- ..+.+.+++|+...
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P---~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMP---CNVESASLHPKKEF 238 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCc---cccccccccCCCce
Confidence 999999999999987655 4678999999999998654 456678999999999998887643 33456678898889
Q ss_pred EEeecCCCeEEEEECcCccceeee-ccCcceeEee
Q 023772 243 VTGGSEDGYIYFWDLVDASVVAKF-KAHSLVVKLL 276 (277)
Q Consensus 243 l~sgs~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~ 276 (277)
++.|++|+.++-||..+++.+..+ ++|.++|.++
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV 273 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV 273 (334)
T ss_pred EEecCcceEEEEEeccCCceeeecccCCCCceEEE
Confidence 999999999999999999999997 8999999875
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=222.86 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=195.5
Q ss_pred eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
+..+.+++|.+-|.++++.|.++.|+||+.|+++++||+++|++..++.+|...|..+++++-..++++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 131 CRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
+.... -+..+.+|-..++++...|+ .+++|+.|.++|+||+|+...+.. .+..+|..+.+.|....+++||.|+
T Consensus 222 Le~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 222 LEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred chhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 97643 34456788888988888765 499999999999999998776654 3556899999998888899999999
Q ss_pred eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
+|++||++.|+-..++..|... ....++.|....+|+++.| .|+-|++..|+.++.+.+|.+.|..|
T Consensus 300 tvrlWDl~agkt~~tlt~hkks--vral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl 366 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKS--VRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTL 366 (460)
T ss_pred eEEEeeeccCceeEeeecccce--eeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeee
Confidence 9999999999988888888643 4556789999999999988 59999999999999999999888765
No 47
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-34 Score=238.53 Aligned_cols=259 Identities=20% Similarity=0.317 Sum_probs=214.6
Q ss_pred eeeccCCcEEEEEE-eCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 13 VLKGHEGAVLAARF-NGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 13 ~l~~H~~~V~~~~~-~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
.+-|..+.|..++| .|+.++|+.+++-+.+|+|+..+-.+. .+.+|...|.+++...+|.+|+|||.|+++++|.+++
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 34578888999887 567899999999999999988776555 8899999999999777788999999999999998854
Q ss_pred C----ceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCC--cceE-----eeccccCcEEEEEecCC--
Q 023772 92 G----RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHST--EPIQ-----IIDSFQDSVMSVCLTKT-- 157 (277)
Q Consensus 92 ~----~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~-- 157 (277)
+ .++....+|++.|.+++++.. ...|+++|.|+++++|++..... .+.. ....|...+.++...++
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk 476 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK 476 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc
Confidence 3 345667899999999999654 35899999999999999875211 1111 12345556666666554
Q ss_pred eEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeE
Q 023772 158 EIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCC 235 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
.+++|++|++.++|+++..+.... .+...+.|+.|+|..+.++++|.|++|+||.+++..++++|.||.+. ...+.
T Consensus 477 LiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a--Vlra~ 554 (775)
T KOG0319|consen 477 LIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA--VLRAS 554 (775)
T ss_pred eEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce--eEeee
Confidence 599999999999999996654433 34557999999999999999999999999999999999999999654 56677
Q ss_pred ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~ 274 (277)
|-.++..+++++.||-|++|++++++++.++.+|..-|=
T Consensus 555 F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 555 FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 888999999999999999999999999999999987654
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=213.37 Aligned_cols=238 Identities=23% Similarity=0.375 Sum_probs=196.4
Q ss_pred cCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Q 023772 17 HEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 17 H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
-++.+..++|+++. +.+++|+.||++|+||.. ...++..+++|...|.++.|++. ...++++|.|++||+|+....+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 35678899999864 678899999999999954 34678899999999999999985 4567888999999999999999
Q ss_pred eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEE
Q 023772 94 VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVR 169 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~ 169 (277)
-+++|.+|..-|....|+|. .++++++|.|+++++||++... + .+.+..|...+.++.+++ +.+++|+.|+.|+
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g-k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG-K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC-c-eeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 99999999999999999986 6799999999999999998763 2 334667777888888764 5599999999999
Q ss_pred EEEccCCccc-cc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECC-CCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 170 TFDIRVGREL-SD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRS-TGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 170 i~d~~~~~~~-~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
.||++.-+.. .. .++-.|+.+.|||.. ..|++++.|-++||||.. ...++.++..|...+...++... +..++|
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~-~~~~vA 295 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLF-DPGQVA 295 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccc-cCceee
Confidence 9999976532 22 345589999999964 578899999999999987 44566677777655555555444 677899
Q ss_pred eecCCCeEEEEEC
Q 023772 245 GGSEDGYIYFWDL 257 (277)
Q Consensus 245 sgs~d~~i~iwd~ 257 (277)
+.+.|+.++||+.
T Consensus 296 s~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 296 STGWDELLYVWNP 308 (311)
T ss_pred ecccccceeeecc
Confidence 9999999999984
No 49
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.3e-32 Score=204.61 Aligned_cols=240 Identities=21% Similarity=0.359 Sum_probs=192.8
Q ss_pred cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCC---CeeEEEE-eccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHR---GIHIKTY-KSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~---~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
...+.+|.+.|..++|+|- |..|+|||.|+.||||+... -.+...+ .+|...|++++|+|.+++|++||.|.++-
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4567899999999999998 88999999999999999874 2333333 46999999999999999999999999999
Q ss_pred EEECCCC--ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-CCcceEeeccccCcEEEEEecC--CeEE
Q 023772 86 YWDVSTG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-STEPIQIIDSFQDSVMSVCLTK--TEII 160 (277)
Q Consensus 86 ~wd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~ 160 (277)
+|.-+.+ +++.++.+|.++|.+++|+++|++||||+.|+.|-+|.+... ..+....+..|..-+..+.+.| ..|+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence 9987654 688999999999999999999999999999999999998632 2344556777877788888888 4599
Q ss_pred EeecCCcEEEEEccCCc---c--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-cccceeeeee
Q 023772 161 GGSVDGTVRTFDIRVGR---E--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-HICKSFKTDC 234 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~~~---~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~ 234 (277)
++++|.+|++|.-..+. . ....+...|.+++|+|.|..|++++.|++++||-..+. +.+ |....+...
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~- 240 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVP- 240 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cchhcccceEeee-
Confidence 99999999999866322 1 12233447999999999999999999999999997632 111 111222222
Q ss_pred EecCCCceEEeecCCCeEEEEECcC
Q 023772 235 CLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 235 ~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+. +..+++|+.|+.|+++....
T Consensus 241 -W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 241 -WD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred -ec--ccceEeccCCCEEEEEEecC
Confidence 22 55799999999999998665
No 50
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4e-33 Score=237.68 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=208.2
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
+..|.|||+.+.|+|+..+++|||.|..|+||+..+.+++.++.+|-..|+.+.|++.-..|+++|.|.+|++|+..+.+
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC---------------------------cceEeecccc
Q 023772 94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST---------------------------EPIQIIDSFQ 146 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~~~~~~ 146 (277)
++..+.+|...|.+..|+|...+++++|.|.+|++||+..-.. .-..++++|.
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD 206 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD 206 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc
Confidence 9999999999999999999999999999999999999853110 0123456788
Q ss_pred CcEEEEEecCCe--EEEeecCCcEEEEEccCCcccc----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772 147 DSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELS----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ 220 (277)
Q Consensus 147 ~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~ 220 (277)
..+..+++.|+. +++|+.|+.+++|.+...+.+. ..+...|.++-|+|..+.+++.++|++||+||+...+.++
T Consensus 207 RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~ 286 (1202)
T KOG0292|consen 207 RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQ 286 (1202)
T ss_pred cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccccee
Confidence 888999998854 8899999999999987665443 2455689999999999999999999999999999999999
Q ss_pred EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772 221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV 262 (277)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~ 262 (277)
+|+..... +.. .+..|..+++++|. |+-+.++.++..+.
T Consensus 287 tfrrendR-FW~-laahP~lNLfAAgH-DsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDR-FWI-LAAHPELNLFAAGH-DSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCe-EEE-EEecCCcceeeeec-CCceEEEEEcccCc
Confidence 99755433 332 34567777777664 44455666664433
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.9e-32 Score=216.28 Aligned_cols=242 Identities=32% Similarity=0.537 Sum_probs=208.4
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
...+.+|..++..+.|.++++++++++.|+.+++||..+++....+..|...+.++.|.++++++++++.|+.+++||+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34567899999999999999999999999999999999888888899999999999999998888888889999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i 168 (277)
+++....+..|...+.++.++|++.++++++.|+.+++||++... ....+..+...+..+.+.++ .+++++.|+.+
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 899888899999999999999998899888889999999997543 33444556667777777766 68888889999
Q ss_pred EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772 169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246 (277)
Q Consensus 169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 246 (277)
++||++.++.... .+..++.++.|+|++.++++++.|+.+++||+.+++....+..|.. .....++++++.+++++
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTN--SVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCC--cEEEEEECCCCCEEEEe
Confidence 9999987665443 3455899999999988888888899999999999888888886643 35566788999999999
Q ss_pred cCCCeEEEEE
Q 023772 247 SEDGYIYFWD 256 (277)
Q Consensus 247 s~d~~i~iwd 256 (277)
+.|+.|++|+
T Consensus 280 ~~d~~i~iw~ 289 (289)
T cd00200 280 SADGTIRIWD 289 (289)
T ss_pred cCCCeEEecC
Confidence 9999999996
No 52
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=209.70 Aligned_cols=243 Identities=18% Similarity=0.325 Sum_probs=199.6
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS--KLISCGGDRQIFYWDVS 90 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~d~~v~~wd~~ 90 (277)
.+.+|.+++++++.+ +.+++|||.|-+|+|||+.+...+..+-.|.+.|+++.|.++-. .|++|+.||.|.+|++.
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 357899999999876 78999999999999999999999999999999999999998764 89999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRT 170 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 170 (277)
..+++.++++|...|+.++++|.+++.++.+.|+.+++||+-.+....+..+.... ....+...+.+++.++.+ .|-+
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~a-t~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKA-TLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcc-eeeEEcCCCCEEEEEecc-EEEE
Confidence 99999999999999999999999999999999999999999776544333333222 223333445557666554 5888
Q ss_pred EEccCCcccccCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772 171 FDIRVGRELSDDL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED 249 (277)
Q Consensus 171 ~d~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 249 (277)
|.+.....+.... +..+.|+.|. ++..|++|..|+.|++||.....+...+.+|.+++-.......|++.+|+++|+|
T Consensus 194 ~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 194 YQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred EecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 9887765444322 2457777776 4567999999999999999999999999999876544444445778899999999
Q ss_pred CeEEEEECcCc
Q 023772 250 GYIYFWDLVDA 260 (277)
Q Consensus 250 ~~i~iwd~~~~ 260 (277)
|.|++||++..
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999999876
No 53
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.8e-34 Score=241.99 Aligned_cols=248 Identities=24% Similarity=0.380 Sum_probs=214.1
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
..+..|..++|+|...+++++-..|.|++||.+.+.++..|.+|.++|+.++|+|....+++||.|.+|++|+..+.+++
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrcl 86 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCL 86 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceeh
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEc
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDI 173 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~ 173 (277)
.++.+|-..|..+.|++.-..++++|.|.+|+||+..+.. .+..+.+|...+++..+.|+ .+++++.|.+||+||+
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi 164 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI 164 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--eEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence 9999999999999999999999999999999999987654 46667778888887777764 4899999999999998
Q ss_pred cCCcc--------------------c-----------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc--eEE
Q 023772 174 RVGRE--------------------L-----------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE--LLQ 220 (277)
Q Consensus 174 ~~~~~--------------------~-----------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~--~~~ 220 (277)
..-+. + ...+..-|+-++|+|.-..|++|+.|+.+++|.+..-+ .+.
T Consensus 165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD 244 (1202)
T KOG0292|consen 165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD 244 (1202)
T ss_pred cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence 42110 0 01122347889999999999999999999999996543 355
Q ss_pred EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
+..||.+.+ ..+.|.|...++.+.|+|+.||+||+.....+++|+
T Consensus 245 tcrgH~nnV--ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 245 TCRGHYNNV--SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred hhhcccCCc--ceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 678887654 445678888899999999999999999998888885
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.6e-32 Score=244.91 Aligned_cols=239 Identities=15% Similarity=0.273 Sum_probs=197.1
Q ss_pred cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce
Q 023772 17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRV 94 (277)
Q Consensus 17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~ 94 (277)
+..+|.+++|++ ++.+|++++.|++|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 456799999987 478999999999999999999999999999999999999996 678999999999999999999998
Q ss_pred eEEeecccCceeEEEEe-cCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec-CCeEEEeecCCcEEEEE
Q 023772 95 IRKFRGHESEVNAVKFN-EYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT-KTEIIGGSVDGTVRTFD 172 (277)
Q Consensus 95 ~~~~~~h~~~v~~i~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~d~~i~i~d 172 (277)
+.++..+ ..+.++.|. +++.++++|+.||.|++||++... .+...+..|...+..+.+. +..+++++.|++|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-LPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-ccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence 8888754 678899995 568999999999999999997643 2344556677788887774 46689999999999999
Q ss_pred ccCCc------ccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-----------cccceeeee
Q 023772 173 IRVGR------ELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-----------HICKSFKTD 233 (277)
Q Consensus 173 ~~~~~------~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------~~~~~~~~~ 233 (277)
++... .+. ..+...+++++|+|++.+|++|+.|+.+++|+......+..+.. ......+..
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 97532 121 23455788999999999999999999999999876655433321 111234667
Q ss_pred eEecCCCceEEeecCCCeEEEEEC
Q 023772 234 CCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 234 ~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
+++++++..+++|+.||.|++|++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 789999999999999999999996
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.2e-32 Score=202.70 Aligned_cols=238 Identities=22% Similarity=0.436 Sum_probs=195.8
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.+|+..|++++|+|.|++|++||.|.++.||.-.. .+++.++++|...|.+++|+++|.+|+|++.|++|-+|.+..+
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 37999999999999999999999999999997543 3678999999999999999999999999999999999998744
Q ss_pred ---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc-cCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772 93 ---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR-SHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG 166 (277)
Q Consensus 93 ---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 166 (277)
+++..++.|+..|..+.|+|...+|+++|+|.+|++|.-. ...-+..+.+..+...+.++.|++ ..+++++.|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 5778899999999999999999999999999999999866 334456778888888898888876 4599999999
Q ss_pred cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC------ceEE-EEeccccceeeeeeEecCC
Q 023772 167 TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG------ELLQ-EYKGHICKSFKTDCCLTNS 239 (277)
Q Consensus 167 ~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~------~~~~-~~~~~~~~~~~~~~~~~~~ 239 (277)
+++||-... .+...+..++..+.|. +| .|++++.|+.|++|..... +++. .-..|.. -+....+.|.
T Consensus 218 tv~Iw~~~~--~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~--dVNsV~w~p~ 291 (312)
T KOG0645|consen 218 TVSIWRLYT--DLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV--DVNSVQWNPK 291 (312)
T ss_pred ceEeeeecc--CcchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc--ccceEEEcCC
Confidence 999998763 2334456788889998 44 6899999999999987642 1111 1112332 3344556773
Q ss_pred -CceEEeecCCCeEEEEECc
Q 023772 240 -DAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 240 -~~~l~sgs~d~~i~iwd~~ 258 (277)
.++|++|+.||.|++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 6789999999999999874
No 56
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=213.26 Aligned_cols=247 Identities=22% Similarity=0.401 Sum_probs=210.3
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..++.||+++|.+...+.+....+|++.|.+.++||.-+|..+..|+ |...|.+++|+.+.++|+||+.++.+++||++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 35678999999999999999999999999999999999999998886 88999999999999999999999999999998
Q ss_pred CCc-eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcE
Q 023772 91 TGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTV 168 (277)
Q Consensus 91 ~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i 168 (277)
..+ +...+.+|+..|..+.|....+.|++++.|++|++||.++... ++.+. ...++.++..++.. +++....+.|
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~--v~sL~-~~s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE--VQSLE-FNSPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE--EEEEe-cCCCCcceeeccCCCEEEEecCcee
Confidence 653 5678999999999999999899999999999999999998643 33222 34456666666543 7777888899
Q ss_pred EEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE-eccccceeeeeeEecCCCceEEee
Q 023772 169 RTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY-KGHICKSFKTDCCLTNSDAHVTGG 246 (277)
Q Consensus 169 ~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~sg 246 (277)
.+||..+...+.. .....|.+.+++|+...+++|++|..++-||..+++.+..| .+|... +-...|+|+|..-++|
T Consensus 208 ~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp--VhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP--VHCVRFSPDGELYASG 285 (334)
T ss_pred EEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc--eEEEEECCCCceeecc
Confidence 9999987665543 44567899999999999999999999999999999999887 777544 3445789999999999
Q ss_pred cCCCeEEEEECcCccce
Q 023772 247 SEDGYIYFWDLVDASVV 263 (277)
Q Consensus 247 s~d~~i~iwd~~~~~~~ 263 (277)
|+||+||+|....++..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 99999999998776543
No 57
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-32 Score=227.09 Aligned_cols=235 Identities=22% Similarity=0.327 Sum_probs=199.6
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG-R 93 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~-~ 93 (277)
.-.+-||++..|-+-.+++++|+.|..||||+.+|++.+++|++|+..|++++++|...+++|+|.|-+||+||-+.+ .
T Consensus 52 eV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa 131 (794)
T KOG0276|consen 52 EVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA 131 (794)
T ss_pred eecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee
Confidence 345678889999999999999999999999999999999999999999999999999999999999999999999864 6
Q ss_pred eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec----CCeEEEeecCCcE
Q 023772 94 VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT----KTEIIGGSVDGTV 168 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~~d~~i 168 (277)
+.++|.+|+.-|.+++|+|. .+.+++++.|++|++|.+.++ .+..+++.|...+.++..- +.++++|+.|.++
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~--~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ti 209 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP--HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTI 209 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC--CCceeeeccccCcceEEeccCCCcceEEecCCCceE
Confidence 88899999999999999986 568999999999999998754 5667788999999888864 2469999999999
Q ss_pred EEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772 169 RTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246 (277)
Q Consensus 169 ~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 246 (277)
++||..+..++.+. +.+.|+.+.|+|.-..+++|++||++|||+..+.++..++.-...+. ......+.++.++.|
T Consensus 210 KvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRv--W~I~~~k~~~~i~vG 287 (794)
T KOG0276|consen 210 KVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERV--WCIAAHKGDGKIAVG 287 (794)
T ss_pred EEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceE--EEEeecCCCCeEEEe
Confidence 99999988877654 55689999999999999999999999999999887776654332222 222223666678888
Q ss_pred cCCCeEE
Q 023772 247 SEDGYIY 253 (277)
Q Consensus 247 s~d~~i~ 253 (277)
...|.|.
T Consensus 288 ~Deg~i~ 294 (794)
T KOG0276|consen 288 FDEGSVT 294 (794)
T ss_pred ccCCcEE
Confidence 7777663
No 58
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2e-31 Score=227.26 Aligned_cols=249 Identities=18% Similarity=0.211 Sum_probs=192.5
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-------------EEEeccCccEEEEEEcC-CCCEEEEEeCCC
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-------------KTYKSHGREVRDVHVTA-DNSKLISCGGDR 82 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-------------~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~ 82 (277)
|-..|+...+++++..+++++.+..+..|+...+..+ ..+.+|.++|++++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4566777777888888889999998889985433222 24678999999999999 788999999999
Q ss_pred cEEEEECCCC-------ceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772 83 QIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154 (277)
Q Consensus 83 ~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
+|++||+.++ +++..+.+|...|.+++|+|++ ++|++++.|++|++||+.... ....+..|...+.++.+
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEE
Confidence 9999999764 3567889999999999999985 699999999999999997643 34556667788888887
Q ss_pred cC--CeEEEeecCCcEEEEEccCCcccccC--CC-CCeeEEEEeCCCCEEEEEe----cCCeEEEEECCCCc-eEEEEec
Q 023772 155 TK--TEIIGGSVDGTVRTFDIRVGRELSDD--LG-QPVNCISMSNDGNCILASC----LDSTLRLLDRSTGE-LLQEYKG 224 (277)
Q Consensus 155 ~~--~~~~~g~~d~~i~i~d~~~~~~~~~~--~~-~~v~~~~~s~~~~~l~~~~----~d~~i~~wd~~~~~-~~~~~~~ 224 (277)
++ ..+++++.|++|++||+++++.+... +. .....+.|.+++..+++++ .|+.|++||+++.. .+.....
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~ 256 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL 256 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence 65 45899999999999999988755432 22 2345678888888777754 47899999998653 3333332
Q ss_pred cccceeeeeeEecCCCceEEeec-CCCeEEEEECcCccceeeecc
Q 023772 225 HICKSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~~~~~~~~~~~ 268 (277)
+. ........+++++.++++|+ .|+.|++||+.+++++..++.
T Consensus 257 d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 257 DQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 22 12233456788898888876 599999999999988776653
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-33 Score=210.49 Aligned_cols=271 Identities=23% Similarity=0.327 Sum_probs=215.9
Q ss_pred ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC------------CC------eeEEEEeccCccEEEEE
Q 023772 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH------------RG------IHIKTYKSHGREVRDVH 67 (277)
Q Consensus 6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~------------~~------~~~~~~~~h~~~v~~~~ 67 (277)
.++.|...+..|++++++.+|++||.+++|||.|..|+|.|++ .+ ..++++-.|..+|+++.
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 3556677789999999999999999999999999999999965 11 35788889999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEe--ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-Eeecc
Q 023772 68 VTADNSKLISCGGDRQIFYWDVSTGRVIRKF--RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDS 144 (277)
Q Consensus 68 ~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~--~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~ 144 (277)
|+|....|++|+.|++||+||...-...+.+ ..-..+|.++.|+|.|++++.|....++++||+.+.+.-.. .--..
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999998643222211 22456899999999999999999999999999986432110 11134
Q ss_pred ccCcEEEEEecC--CeEEEeecCCcEEEEEccCCccccc---CC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772 145 FQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD---DL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218 (277)
Q Consensus 145 ~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~---~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~ 218 (277)
|.+.+..+..++ ...++|+.||.|++||--+++++.. .+ +..|.+..|..+|+|+++++.|..+++|.+.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 566777777665 4588999999999999888877654 23 45899999999999999999999999999999999
Q ss_pred EEEEecc---ccceeeeeeEecCCCceEEee-cCCCeEEEEECcCccceeeec-cCcceeEee
Q 023772 219 LQEYKGH---ICKSFKTDCCLTNSDAHVTGG-SEDGYIYFWDLVDASVVAKFK-AHSLVVKLL 276 (277)
Q Consensus 219 ~~~~~~~---~~~~~~~~~~~~~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~ 276 (277)
+.+|.|. ..........|...+.|+..- -..+.+.-||.+++..+..+. +|.++++.+
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999875 122233445566556665542 345678999999999888887 899998865
No 60
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=2.8e-31 Score=226.40 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=168.8
Q ss_pred ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772 12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTADN-SKLISCGGDR 82 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~ 82 (277)
..+.||.++|++++|+| ++++|+|||.|++|++||+.++ ..+..+.+|...|.+++|+|++ ++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 8899999999999999998764 3567889999999999999975 6899999999
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCc-EEEEEec--CCeE
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDS-VMSVCLT--KTEI 159 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~ 159 (277)
+|++||+++++.+..+..|...|.+++|++++.+|++++.|++|++||+++.. .+..+..|... ...+.+. ...+
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcCCCCeE
Confidence 99999999999999999999999999999999999999999999999998754 33344444432 2223333 3445
Q ss_pred EEee----cCCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEe
Q 023772 160 IGGS----VDGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 160 ~~g~----~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~ 223 (277)
++++ .|+.|++||++....... .....+....|++++++|++++ .|+.|++||+.+++++....
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 5543 478999999986543221 1223455667899999998887 59999999999888776543
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=7.2e-33 Score=212.64 Aligned_cols=254 Identities=23% Similarity=0.358 Sum_probs=215.2
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--------EeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--------YKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
.|.+.-+.|..|+|||.||+|||.||-|.+||..+|+..+. |..+..+|.|+.|+.+...+++|+.||.||+
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 35677799999999999999999999999999998876543 4467889999999999999999999999999
Q ss_pred EECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEee
Q 023772 87 WDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGS 163 (277)
Q Consensus 87 wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~ 163 (277)
|.+++|.|++.|. +|+..|+++.|+.|+..+++++.|.++++.-+.++. ....+.+|...+....+. +..+++++
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--hHHHhcCccccccceEEcCCCCeEEEec
Confidence 9999999999987 899999999999999999999999999999987754 344456666666655554 56799999
Q ss_pred cCCcEEEEEccCCcccccC----CCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeEec
Q 023772 164 VDGTVRTFDIRVGRELSDD----LGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCCLT 237 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~ 237 (277)
.||++++|+..+.+++.+. ...+|+++-.-|.. ..++.+-..+++++.+++ |+.++.|... ....-...|+++
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEec
Confidence 9999999999988766442 34578888877754 567888888999999996 7888888642 223345678899
Q ss_pred CCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 238 NSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
|.|.++...++|+.++-+...+|++...+..|..
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk 480 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK 480 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecccc
Confidence 9999999999999999999999999999998854
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.8e-33 Score=224.26 Aligned_cols=244 Identities=21% Similarity=0.321 Sum_probs=199.0
Q ss_pred ccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 023772 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWD 88 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd 88 (277)
...++.||..+|..++|+++|..++|+|.|+.+++||+++|+++..|.. ...++++.|.|++ +.+++|+.|+.|+.||
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD 328 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWD 328 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence 3566789999999999999999999999999999999999999998875 4688999999998 7889999999999999
Q ss_pred CCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCCeEEEeecCCc
Q 023772 89 VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKTEIIGGSVDGT 167 (277)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 167 (277)
+.+++.++++..|-..|..+.|-++++.+++.+.|+++++|+.+..-.... .....|.-+...+.+....++.-+.|..
T Consensus 329 iRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 329 IRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred ccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 999999999999999999999999999999999999999999875432111 1122333444455555566888899999
Q ss_pred EEEEEccCCcc-----cccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 168 VRTFDIRVGRE-----LSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 168 i~i~d~~~~~~-----~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
|.+|....... ....+ ..--..+.|||||.+|++|..||.+.+||.++-+++..+..|...+ +...+.|..
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~c--i~v~wHP~e 486 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPC--IGVDWHPVE 486 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcce--EEEEecCCC
Confidence 99988643221 11211 2234557999999999999999999999999999999999885544 444566644
Q ss_pred -ceEEeecCCCeEEEEE
Q 023772 241 -AHVTGGSEDGYIYFWD 256 (277)
Q Consensus 241 -~~l~sgs~d~~i~iwd 256 (277)
..+|+++.||.|++||
T Consensus 487 ~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVATCGWDGLIKIWD 503 (503)
T ss_pred cceeEecccCceeEecC
Confidence 4589999999999996
No 63
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-30 Score=211.05 Aligned_cols=260 Identities=19% Similarity=0.361 Sum_probs=211.4
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCC----CcE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGD----RQI 84 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v 84 (277)
..++..|..+++-..|+|.|.||+||..-|+|||||....+. ..+|+.-.++|..+.|+.++++|+..+.- |.+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 566789999999999999999999999999999999765333 34677778999999999999999988653 356
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIG 161 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 161 (277)
.+|| +|.-+..+.+|...|++++|-|... +++||+.|++|.+|+-..... ...+..|...+.++.++| ..+++
T Consensus 132 F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 132 FLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred EEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--eecccccccceeeEEECCCCCeEEE
Confidence 6775 5667788999999999999998754 699999999999998543221 222345666677776665 55999
Q ss_pred eecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc-ceeeeeeE
Q 023772 162 GSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC-KSFKTDCC 235 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~ 235 (277)
.+.||++.+||=.+++.+.. .+...|.+++|+||++.+++++.|.++||||+.+.++++++..... ..+.+-|
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~- 286 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGC- 286 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEE-
Confidence 99999999999988876532 3566899999999999999999999999999999999998864322 2233333
Q ss_pred ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
+.+ +..|++-|.+|+|.+++..+.+.++.++||...|+.|
T Consensus 287 lWq-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaL 326 (603)
T KOG0318|consen 287 LWQ-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITAL 326 (603)
T ss_pred EEe-CCeEEEEEcCcEEEEecccCCChhheecccccceeEE
Confidence 444 4567888999999999999999999999999999876
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-31 Score=223.66 Aligned_cols=259 Identities=15% Similarity=0.238 Sum_probs=221.1
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.+.||...|++++++.+...++||+. +.++||+..+.++++++.. +.+.+..|-|.+.++++|...|.+.+||+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeehh
Confidence 35799999999999999888888665 7999999999999999974 48999999999999999999999999999999
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-----cceE-----eeccccCcEEEEEec--CCeEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-----EPIQ-----IIDSFQDSVMSVCLT--KTEII 160 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~~~-----~~~~~~~~~~~~~~~--~~~~~ 160 (277)
..+.+.++|.+.+++++..||++.++|||.|.+|++||...-.. ..+. ..-...+.+.++..+ +..++
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999742111 0100 011234556666666 45689
Q ss_pred EeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772 161 GGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
++-.|.++++|=+.+-+-.... +.-||.||.+|||++.++|||.|+++++|-+.-|.|-+.+.+|.... ...-|-|
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSv--m~V~F~P 602 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSV--MSVQFLP 602 (888)
T ss_pred EEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCce--eEEEEcc
Confidence 9999999999988876655443 45599999999999999999999999999999999999999986554 3445778
Q ss_pred CCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
+..++.+++.|+.|+-||-+..+.+.++.+|...|.+|
T Consensus 603 ~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred cceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 88889999999999999999999999999999888876
No 65
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=211.52 Aligned_cols=243 Identities=21% Similarity=0.310 Sum_probs=204.7
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...+.-|.++|.|+.|+.|...++||+.||.|++|.+.+|.+++.|. +|...|+++.|+.++..++++|.|.++++..+
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl 335 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL 335 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc
Confidence 34466799999999999999999999999999999999999999997 89999999999999999999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEEEeecCC
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDG 166 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~ 166 (277)
.+|++++.|++|.+.|+...|.++|..+++++.||+|++|+..+..+.......+...++..+.+ ++.+++++....
T Consensus 336 KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn 415 (508)
T KOG0275|consen 336 KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN 415 (508)
T ss_pred ccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC
Confidence 99999999999999999999999999999999999999999876544322222222334444443 466788888889
Q ss_pred cEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772 167 TVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241 (277)
Q Consensus 167 ~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (277)
++.+-++.. +.+.. ..+...-+.+++|.|.++.+.++|+.++.|...+|++.+++..|+..+.. ....|..+
T Consensus 416 tv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG--l~HHPHqN 492 (508)
T KOG0275|consen 416 TVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG--LTHHPHQN 492 (508)
T ss_pred eEEEEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc--cccCcccc
Confidence 999988753 22221 23445666789999999999999999999999999999999988765443 34578888
Q ss_pred eEEeecCCCeEEEEE
Q 023772 242 HVTGGSEDGYIYFWD 256 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd 256 (277)
.+|+-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999995
No 66
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-31 Score=209.96 Aligned_cols=247 Identities=22% Similarity=0.367 Sum_probs=206.3
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-----------------EE-eccCccEEEEEEcCCC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-----------------TY-KSHGREVRDVHVTADN 72 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-----------------~~-~~h~~~v~~~~~~~~~ 72 (277)
...+..|.-+|.+++++|++++.++++.|++|.-|+..+++..+ .- +.|...+.++++++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45677899999999999999999999999999999987765321 11 2788899999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152 (277)
Q Consensus 73 ~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
++|++|+.|..|.||+..+.+.+..+.+|...|.+++|-.....+++++.|+++++|++... ..+.++.+|++.+..+
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~--s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL--SYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh--HHHHHHhCCccceeee
Confidence 99999999999999999999999999999999999999998899999999999999998753 4556678899999988
Q ss_pred EecCC-eEE-EeecCCcEEEEEccCCc-ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-c-cc
Q 023772 153 CLTKT-EII-GGSVDGTVRTFDIRVGR-ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-H-IC 227 (277)
Q Consensus 153 ~~~~~-~~~-~g~~d~~i~i~d~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~-~~ 227 (277)
..... .++ +|+.|+++++|++.... .+.......+.|++|-.+. .+++||.||.|.+|++.+.+++..... | ..
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~-HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDE-HFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred chhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEeccc-ceeeccCCceEEEeeecccCceeEeecccccc
Confidence 76543 344 56699999999996543 3444556689999997654 589999999999999998888766542 2 11
Q ss_pred --------ceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772 228 --------KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 228 --------~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
+.++...+.-|...++++||.+|+||+|.+.++
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 124556667788889999999999999999987
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.3e-31 Score=215.08 Aligned_cols=263 Identities=22% Similarity=0.376 Sum_probs=207.3
Q ss_pred ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEE-eccCccEEEEEEcCCCCEEEEEeC
Q 023772 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTY-KSHGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
+|......+++|...|.++++.|.|..++|||.|.+|+.||..-- +..+.+ ......|+++.|++.+..|+..+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 577777788999999999999999999999999999999996421 112222 234568999999999999999999
Q ss_pred CCcEEEEECCCCceeEEe------------ecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeec----
Q 023772 81 DRQIFYWDVSTGRVIRKF------------RGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIID---- 143 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~------------~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---- 143 (277)
....+++|-...+.+... ++|...+++-+|+|+. +.++|++.||++++||+.... ...+.+.
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k-~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK-SQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch-hheeEEeeccC
Confidence 999999997655444332 5799999999999975 579999999999999997653 2233322
Q ss_pred -cccCcEEEEEecCC--eEEEeecCCcEEEEEccCCcc-----cccCC--CCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 144 -SFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRE-----LSDDL--GQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 144 -~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~-----~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
...-++..|.+++. .+++|..||.|.+|+.+.... +...| ++.|+|+.||++|++|++-+.|+++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 22335677777654 488999999999999864322 22223 458999999999999999999999999999
Q ss_pred CC-CceEEEEeccccceeeeeeEecCCCceEEeec------CCCeEEEEECcCccceeeeccC
Q 023772 214 ST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGS------EDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------~d~~i~iwd~~~~~~~~~~~~h 269 (277)
+. ++++..+.+-......++|||||+.+++++|+ ..|.+++||..+...++++.-.
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 76 56677777765556678899999999999974 4678999999999988888744
No 68
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.3e-31 Score=205.61 Aligned_cols=245 Identities=21% Similarity=0.379 Sum_probs=191.3
Q ss_pred cccccceeeccCCcEEEEEEeCC---CCEEEEEeCCCcEEEEcCCCCee----EEEEeccCccEEEEEEcCCCCEEEEEe
Q 023772 7 PRTEANVLKGHEGAVLAARFNGD---GNYCLSCGKDRTIRLWNPHRGIH----IKTYKSHGREVRDVHVTADNSKLISCG 79 (277)
Q Consensus 7 ~~~~~~~l~~H~~~V~~~~~~~~---~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~t~s 79 (277)
......++.||.++|.++++--. ...++++|.|.++++|-.+.+.. ++..++|...|-++...+++.++++||
T Consensus 133 ~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 133 KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec
Confidence 34456778899999998887533 33699999999999998776543 344569999999999999999999999
Q ss_pred CCCcEEEEECCC-------------------------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772 80 GDRQIFYWDVST-------------------------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134 (277)
Q Consensus 80 ~d~~v~~wd~~~-------------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~ 134 (277)
.|.++++|+.++ ..++-++.+|+.+|.++.|.+ ...+++++.|.+|+.||+..+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg 291 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG 291 (423)
T ss_pred ccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecc
Confidence 999999999321 124567889999999999998 779999999999999999876
Q ss_pred CCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcc--c---ccCCCCCeeEEEEeCCCC-EEEEEecCC
Q 023772 135 STEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRE--L---SDDLGQPVNCISMSNDGN-CILASCLDS 206 (277)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~--~---~~~~~~~v~~~~~s~~~~-~l~~~~~d~ 206 (277)
..... ... .....++... ...+++|+.|+.|++||.|++.. + ...+..-|.++.|+|... +|++++.|+
T Consensus 292 ~~~~~-~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 292 GLKST-LTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cceee-eec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 43221 222 2233444443 45699999999999999997632 1 123445789999999764 578899999
Q ss_pred eEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 207 TLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 207 ~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
++++||+++.+ ++..+.+|..+....+ ..++.++++|+.|++|+|+.-.
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vd---W~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVD---WNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEe---ccCCceEEeccCcceEEEeccc
Confidence 99999999877 8899999966544333 4567899999999999998653
No 69
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=8.1e-31 Score=195.44 Aligned_cols=258 Identities=17% Similarity=0.247 Sum_probs=203.8
Q ss_pred CccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE--EEeccCccEEEEEEcCC-CCEEEEEeCC
Q 023772 5 DLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK--TYKSHGREVRDVHVTAD-NSKLISCGGD 81 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~-~~~l~t~s~d 81 (277)
+++......+++|.++|-+++|+.+|..|++|+.|+++++|++...+..+ ..++|...|-.++|+|. ...+++++.|
T Consensus 7 ~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~d 86 (313)
T KOG1407|consen 7 KFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGD 86 (313)
T ss_pred chhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCC
Confidence 33444445678999999999999999999999999999999988765443 35689999999999874 5689999999
Q ss_pred CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCeE
Q 023772 82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTEI 159 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 159 (277)
++|++||...+++..........++ +.|+|++++++.++.|..|...|.+......... ....+.-+. .+.+.+
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---~~~e~ne~~w~~~nd~F 162 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---FKFEVNEISWNNSNDLF 162 (313)
T ss_pred ceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhc---ccceeeeeeecCCCCEE
Confidence 9999999999999888776555555 8999999999999999999999988654322211 112222333 344556
Q ss_pred EEeecCCcEEEEEccCCcccccCCCCCe--eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772 160 IGGSVDGTVRTFDIRVGRELSDDLGQPV--NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT 237 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
+.....|+|.|-....-+.+.....++. .|+.|+|+|++|++|+.|..+-+||+..--+++.+.-+.=+ +...+|+
T Consensus 163 flt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp--VRTlSFS 240 (313)
T KOG1407|consen 163 FLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP--VRTLSFS 240 (313)
T ss_pred EEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc--eEEEEec
Confidence 6666679999977765555544444444 45679999999999999999999999988888888766433 3445789
Q ss_pred CCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 238 NSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
-+|++||+||+|..|-|=++++|..+.+++-
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEeec
Confidence 9999999999999999999999999888874
No 70
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-30 Score=196.57 Aligned_cols=258 Identities=18% Similarity=0.335 Sum_probs=204.4
Q ss_pred eeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCC-CeeE-EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 14 LKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHR-GIHI-KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~-~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
-.--++.|.+++|||. ..+++.+|.|++||+|+++. |... +....|.++|.+++|+.++.++++|+.|+.+++||+.
T Consensus 23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA 102 (347)
T ss_pred CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence 3445678999999994 45666899999999999876 3322 4456789999999999999999999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCC--EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 168 (277)
+++. .++..|..+|..+.|-+... .|+|||.|.+|+.||.++..+ +..+ ..++.+++.......++++..++.|
T Consensus 103 S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t~-~LPeRvYa~Dv~~pm~vVata~r~i 178 (347)
T KOG0647|consen 103 SGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VATL-QLPERVYAADVLYPMAVVATAERHI 178 (347)
T ss_pred CCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eeee-eccceeeehhccCceeEEEecCCcE
Confidence 9964 56888999999999987655 899999999999999996543 3332 3466788887777788899999999
Q ss_pred EEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE--EEEecccc------cee-eeeeE
Q 023772 169 RTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL--QEYKGHIC------KSF-KTDCC 235 (277)
Q Consensus 169 ~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~------~~~-~~~~~ 235 (277)
.+|+++.+... .......++|++..++..-.+.|+-+|.+-+..+..++.. ..|+=|.. .++ ..+.+
T Consensus 179 ~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 179 AVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 99999766432 2234567899998888877899999999999888765332 23333321 122 34468
Q ss_pred ecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 275 (277)
|.|....|++++.||+..+||-.....++..+.|+.+|.+
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItc 298 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITC 298 (347)
T ss_pred eecccceEEEecCCceEEEecchhhhhhhccCcCCCccce
Confidence 8998889999999999999999888888888888888765
No 71
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-31 Score=208.07 Aligned_cols=243 Identities=21% Similarity=0.351 Sum_probs=192.6
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
..+|-||..+|..+.||||.++|++|+.|..+++||..+|.....+.. |...+.+++|.||+..+++|+.|+++..||+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL 341 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC
Confidence 466789999999999999999999999999999999999998877753 4678999999999999999999999999998
Q ss_pred CCCceeEEeeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772 90 STGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG 166 (277)
Q Consensus 90 ~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 166 (277)
+. +....+++-+ ..|.+++..+||+.+++...|..|++++...... .- .-....++.++..++ ..+++.-.+.
T Consensus 342 Dg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~d-r~--lise~~~its~~iS~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 342 DG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVD-RG--LISEEQPITSFSISKDGKLALVNLQDQ 417 (519)
T ss_pred Cc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhh-hc--cccccCceeEEEEcCCCcEEEEEcccC
Confidence 64 4455565543 4589999999999999999999999999764321 11 122345677777765 4477788899
Q ss_pred cEEEEEccCCcccccCCCC----CeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC-
Q 023772 167 TVRTFDIRVGRELSDDLGQ----PVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD- 240 (277)
Q Consensus 167 ~i~i~d~~~~~~~~~~~~~----~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 240 (277)
.+.+||+...+.+....++ -+-.-+|-- +..++++||+|+.|+||+..+++++.++.||...+ ..++++|.+
T Consensus 418 ei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~v--NcVswNP~~p 495 (519)
T KOG0293|consen 418 EIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTV--NCVSWNPADP 495 (519)
T ss_pred eeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCccee--eEEecCCCCH
Confidence 9999999865555443332 233335543 44789999999999999999999999999996432 334566654
Q ss_pred ceEEeecCCCeEEEEECcC
Q 023772 241 AHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd~~~ 259 (277)
.++|+||.||+||||....
T Consensus 496 ~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 496 EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred HHhhccCCCCeEEEecCCc
Confidence 5689999999999998764
No 72
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-30 Score=214.71 Aligned_cols=241 Identities=22% Similarity=0.359 Sum_probs=210.4
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
..+++.|+++.|+++|.+|+.|-.+|.|.|||..+.+.+..+.+ |...|-+++|. ...+.+|+.|+.|..+|+...+
T Consensus 214 ~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 214 SFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ 291 (484)
T ss_pred ecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch
Confidence 34489999999999999999999999999999999888999988 99999999998 5678899999999999998876
Q ss_pred eeEE-eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---EEEe--ecCCc
Q 023772 94 VIRK-FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGG--SVDGT 167 (277)
Q Consensus 94 ~~~~-~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g--~~d~~ 167 (277)
.... +.+|..+|+.+.|++++.++++|+.|+.+.|||... .++...+..|...|.++.+.|-. ||+| +.|++
T Consensus 292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--PEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC--ccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 5444 889999999999999999999999999999999843 45667778888999888887643 6664 56999
Q ss_pred EEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEE--ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 168 VRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILAS--CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 168 i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
|++||..++..+.. ..+..|.+|.|++..+.|+++ ..++.|.||+..+.+++..+.+|... ++..+++|||..++
T Consensus 370 i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R--Vl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR--VLYLALSPDGETIV 447 (484)
T ss_pred EEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce--eEEEEECCCCCEEE
Confidence 99999998887654 457789999999999888775 45678999999999999999999755 56677899999999
Q ss_pred eecCCCeEEEEECcCcc
Q 023772 245 GGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 245 sgs~d~~i~iwd~~~~~ 261 (277)
+|+.|.++++|++-+..
T Consensus 448 t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 448 TGAADETLRFWNLFDER 464 (484)
T ss_pred EecccCcEEeccccCCC
Confidence 99999999999987753
No 73
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.4e-29 Score=215.85 Aligned_cols=223 Identities=18% Similarity=0.204 Sum_probs=170.4
Q ss_pred EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eeEEeecccCcee
Q 023772 36 CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTGR--------VIRKFRGHESEVN 106 (277)
Q Consensus 36 ~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~~--------~~~~~~~h~~~v~ 106 (277)
||.++.+++|+......+..+.+|.++|.+++|+|+ +.+|+||+.|++|++||+.++. ++..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 677899999998877788899999999999999996 6899999999999999997542 3456789999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccccC-
Q 023772 107 AVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSDD- 182 (277)
Q Consensus 107 ~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~~- 182 (277)
++.|+|++.. +++++.|++|++||++.... ...+. +...+.++.+++ ..+++++.|+.|++||+++++.+...
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 9999998875 57899999999999986542 22222 345677777764 55888889999999999988765432
Q ss_pred -CCCCe-----eEEEEeCCCCEEEEEecCC----eEEEEECCC-CceEEEEeccccceeeeeeEecCCCceEEeecCCCe
Q 023772 183 -LGQPV-----NCISMSNDGNCILASCLDS----TLRLLDRST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY 251 (277)
Q Consensus 183 -~~~~v-----~~~~~s~~~~~l~~~~~d~----~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 251 (277)
+...+ ....|++++.+|++++.|+ .|+|||++. ++++..+..+............+++.++++|+.|+.
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe
Confidence 22222 2334668999999988774 799999984 666666544332221111223456888999999999
Q ss_pred EEEEECcCcc
Q 023772 252 IYFWDLVDAS 261 (277)
Q Consensus 252 i~iwd~~~~~ 261 (277)
||+|++..+.
T Consensus 287 Ir~~e~~~~~ 296 (568)
T PTZ00420 287 CRYYQHSLGS 296 (568)
T ss_pred EEEEEccCCc
Confidence 9999998764
No 74
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6.1e-31 Score=193.51 Aligned_cols=213 Identities=23% Similarity=0.383 Sum_probs=186.9
Q ss_pred eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
+..+.+..|+++|+++.|+-+|++.+|++.|++|++|+...+.+++++.+|..+|..++.+.|...+++|+.|..+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEec
Q 023772 131 CRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCL 204 (277)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~ 204 (277)
..++. ....+..|...+..+.++... +++|+.|.++++||.|+...- .......|.++.++ +..|++|+.
T Consensus 88 V~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV 163 (307)
T ss_pred cccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence 98764 345677888999999987654 889999999999999875422 22234567777775 456999999
Q ss_pred CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 205 DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 205 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
||++|.||++.|+....|.+|. +...+++++++.+..++.|+++++-|-++|++++.+++|..
T Consensus 164 DGtvRtydiR~G~l~sDy~g~p----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFGHP----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred CCcEEEEEeecceeehhhcCCc----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc
Confidence 9999999999999988888874 35567999999999999999999999999999999999964
No 75
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=1.1e-31 Score=208.48 Aligned_cols=247 Identities=20% Similarity=0.329 Sum_probs=191.5
Q ss_pred cceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 11 ANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...|.||.++|.+++=+|.. ..++||+.||.|+|||+.+-.++.+|++|.+.|..+++.. ..++++|.|++||.|-+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 44578999999999999977 7899999999999999999999999999999999999986 67999999999998873
Q ss_pred CC--------------------------------------CceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEe
Q 023772 90 ST--------------------------------------GRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWD 130 (277)
Q Consensus 90 ~~--------------------------------------~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd 130 (277)
+. ..++.++......|.++.|+|.. ..|++|+.|+.|.+||
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 21 11233444445567777777764 4677888999999999
Q ss_pred CccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecC
Q 023772 131 CRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLD 205 (277)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d 205 (277)
+++..+....++.... ..++|+| ..+++|..|..+..||++.-.... ..+...|.+++|||.|+-+++||.|
T Consensus 217 ~R~~~Pl~KVi~~mRT---N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRT---NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred cccCCccceeeeeccc---cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 9987665444444333 3445555 348899999999999998655432 2445688999999999999999999
Q ss_pred CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772 206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~ 263 (277)
.+||||....+.-...|...- ......+.+|-|.+|+++||.|++||+|...-.+.+
T Consensus 294 ksIRIf~~~~~~SRdiYhtkR-Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 294 KSIRIFPVNHGHSRDIYHTKR-MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL 350 (433)
T ss_pred ceEEEeecCCCcchhhhhHhh-hheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence 999999998776554442210 112344567889999999999999999987654443
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.7e-31 Score=219.80 Aligned_cols=242 Identities=24% Similarity=0.427 Sum_probs=202.2
Q ss_pred ccCCcEE---EEEEe-CCCCEEEEEeCCCcEEEEcCCCC------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 16 GHEGAVL---AARFN-GDGNYCLSCGKDRTIRLWNPHRG------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 16 ~H~~~V~---~~~~~-~~~~~l~s~s~d~~v~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
.|...|. .+..+ |.++||+|||.||.||+|+...- ..+..++.|..-|+.+....+++.|+++|.|.+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4666666 55555 46678999999999999986432 13667889999999999999999999999999999
Q ss_pred EEECCCC--ceeEEeecccCceeEEEE-ecCCCEEEEEeCCCcEEEEeCccCCC--------cceEeec-cccCcEEEEE
Q 023772 86 YWDVSTG--RVIRKFRGHESEVNAVKF-NEYSSVVVSAGYDQSLRAWDCRSHST--------EPIQIID-SFQDSVMSVC 153 (277)
Q Consensus 86 ~wd~~~~--~~~~~~~~h~~~v~~i~~-~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~-~~~~~~~~~~ 153 (277)
+|+...+ -++.+++.|+..|.++++ -++..++++||.|+.|++||++.... .....+. ++..++++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 578889999999999999 77888999999999999999985421 1122222 5667788888
Q ss_pred ecCC--eEEEeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772 154 LTKT--EIIGGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS 229 (277)
Q Consensus 154 ~~~~--~~~~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 229 (277)
.+++ .+++|+..+.|++||.++++++... +-..|+++..++||..++++|.||+|++||+...+++.+|..|...+
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 8776 5889999999999999998876553 45689999999999999999999999999999999999999997765
Q ss_pred eeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 230 FKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 230 ~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+.+. .+|.-..+.+|+.||.|+.=|+.+
T Consensus 259 WaL~--~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 259 WALQ--SSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEEe--eCCCcceEEecCCCCcEEecccCC
Confidence 5444 356777899999999999999988
No 77
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=3.1e-31 Score=208.91 Aligned_cols=239 Identities=21% Similarity=0.343 Sum_probs=201.5
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..+|.|-.++|+.+.|.++++.+++++.|+.+++|+....+...++.+|...|+++.|......+++|+.|.++|+||+.
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhh
Confidence 45677888999999999999999999999999999999999999999999999999999888889999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i 168 (277)
...+.+++.. .+.++.|..+ ...+++|-.|++|+.||.+....... .. ..+.+.++..+ +..+++.+-|.++
T Consensus 292 k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~s--v~-~gg~vtSl~ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 292 KAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRS--VP-LGGRVTSLDLSMDGLELLSSSRDDTL 365 (459)
T ss_pred hhheeccccc-cccccceEec--ceeeeecccccceEEEeccCCceeeE--ee-cCcceeeEeeccCCeEEeeecCCCce
Confidence 9888877653 4455666665 56889999999999999987654322 22 23366666654 5568888999999
Q ss_pred EEEEccCCccccc------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772 169 RTFDIRVGRELSD------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242 (277)
Q Consensus 169 ~i~d~~~~~~~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (277)
.+.|+++.+.... ..+..++.+.|||++.|+++||.||.++||++.++++...+........++.+.|.|-|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 9999997653321 2345688999999999999999999999999999999988877655546788889999999
Q ss_pred EEeecCCCeEEEE
Q 023772 243 VTGGSEDGYIYFW 255 (277)
Q Consensus 243 l~sgs~d~~i~iw 255 (277)
+++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999999
No 78
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.2e-30 Score=204.67 Aligned_cols=237 Identities=20% Similarity=0.373 Sum_probs=195.5
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~ 92 (277)
+..-+..|.++.|-.||++++.|...|.|+|+|..+...++.+.+|+.++..+.|+|.. ..+++|+.|+.+++||+.+.
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a 143 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA 143 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence 33456789999999999999999999999999977656678899999999999999955 56778899999999999999
Q ss_pred ceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVR 169 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~ 169 (277)
.....+.+|+..|.+.+++|. +.+++|||+||+|++||.+... .++.. -.|..++-.+.+-|. .++++ ....++
T Consensus 144 ~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~e-lnhg~pVe~vl~lpsgs~iasA-gGn~vk 220 (487)
T KOG0310|consen 144 YVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVE-LNHGCPVESVLALPSGSLIASA-GGNSVK 220 (487)
T ss_pred EEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEE-ecCCCceeeEEEcCCCCEEEEc-CCCeEE
Confidence 887789999999999999987 4589999999999999999764 33333 346667766665544 34444 456899
Q ss_pred EEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772 170 TFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246 (277)
Q Consensus 170 i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 246 (277)
+||+.++.+... .+...|+|+.+..++..|++|+-|+.+++||..+.+.+..+.- +...+++.++|++..++.|
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~---~~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY---PGPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec---ccceeeEEecCCCceEEEe
Confidence 999997655433 2556899999999999999999999999999888888876643 3456888899999999999
Q ss_pred cCCCeEEEEE
Q 023772 247 SEDGYIYFWD 256 (277)
Q Consensus 247 s~d~~i~iwd 256 (277)
-.||.+-+=+
T Consensus 298 msnGlv~~rr 307 (487)
T KOG0310|consen 298 MSNGLVSIRR 307 (487)
T ss_pred cccceeeeeh
Confidence 9999886653
No 79
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=8.8e-29 Score=212.38 Aligned_cols=204 Identities=17% Similarity=0.216 Sum_probs=158.1
Q ss_pred cceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCe--------eEEEEeccCccEEEEEEcCCCCEE-EEEeC
Q 023772 11 ANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGI--------HIKTYKSHGREVRDVHVTADNSKL-ISCGG 80 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~ 80 (277)
...+.+|.++|.+++|+|+ +.+|+|||.|++|+|||+.++. ++..+.+|...|.+++|+|++..+ ++++.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~ 146 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF 146 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence 4567899999999999996 7899999999999999987532 345678899999999999988765 68999
Q ss_pred CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE-----E--
Q 023772 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-----C-- 153 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~-- 153 (277)
|++|++||+++++.+..+. |...|.+++|++++.+|++++.|++|++||+++.. .+..+..|...+... .
T Consensus 147 DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQE--IASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred CCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCc--EEEEEecccCCceeEEEEeeeEc
Confidence 9999999999998877776 66789999999999999999999999999998753 334455555433221 1
Q ss_pred ecCCeEEEeecCC----cEEEEEccCC-ccccc-CCC---CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc
Q 023772 154 LTKTEIIGGSVDG----TVRTFDIRVG-RELSD-DLG---QPVNCISMSNDGNCILASCLDSTLRLLDRSTGE 217 (277)
Q Consensus 154 ~~~~~~~~g~~d~----~i~i~d~~~~-~~~~~-~~~---~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~ 217 (277)
.+...+++++.|+ +|++||++.. ..+.. ... ..+......++|.++++|+.|+.||+|++..+.
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 2345688877774 7999999853 32221 111 222223334568889999999999999998764
No 80
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.5e-30 Score=198.66 Aligned_cols=216 Identities=18% Similarity=0.280 Sum_probs=179.3
Q ss_pred EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC------------C------ceeEEeecccCceeEEEEecCC
Q 023772 53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST------------G------RVIRKFRGHESEVNAVKFNEYS 114 (277)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~------------~------~~~~~~~~h~~~v~~i~~~~~~ 114 (277)
...+..|..++++.+|+++|.+++|||.|..||++|++. + -+++++..|..+|+.+.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 456678999999999999999999999999999999861 1 2578899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE--EEecCCeEEEeecCCcEEEEEccCCccccc-----CCCCCe
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKTEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPV 187 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v 187 (277)
..|++++.|++|++||......++....-....++.+ +.+++..++.|...-++++||+.+-+++.. .+...|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 9999999999999999875433322211112234444 445566788999999999999998876532 345689
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 188 NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
+++.+++.|+..++++.||.|+|||--+++++.++........+.+..|..+++|+.+.+.|..+++|.+.+++++.++.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 99999999999999999999999999999999888653334556777899999999999999999999999999999887
Q ss_pred c
Q 023772 268 A 268 (277)
Q Consensus 268 ~ 268 (277)
|
T Consensus 345 G 345 (430)
T KOG0640|consen 345 G 345 (430)
T ss_pred c
Confidence 5
No 81
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2e-28 Score=186.61 Aligned_cols=249 Identities=17% Similarity=0.309 Sum_probs=198.5
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
-++.|.++.|+|.+..|+.++.||++|+||.........++ |.+++.+++|.+ ...+++|+.||.|+.+|+++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 35779999999999999999999999999998876555554 889999999986 468999999999999999987754
Q ss_pred EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCC
Q 023772 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG 176 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~ 176 (277)
.+..|..+|.+|.+.+-...+++||.|++|++||.+...... .+ .....|.++...++.|++|..|..+.+||+|+.
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~--~~-d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG--TF-DQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc--cc-ccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence 466799999999999988999999999999999998632221 12 233478999999999999999999999999987
Q ss_pred cccc----cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEEeccc-------cceeeeeeEecCCCc
Q 023772 177 RELS----DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG----ELLQEYKGHI-------CKSFKTDCCLTNSDA 241 (277)
Q Consensus 177 ~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~-------~~~~~~~~~~~~~~~ 241 (277)
.... .....+++|+++-|++.-+++++-||.+.+=.+... +.-..|+-|. .........|+|-..
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 6543 234568999999998777899999998876433322 2222344331 112234467889888
Q ss_pred eEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
.++||+.||.|.+||+.+.+.+.+|..-..
T Consensus 246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~ 275 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRKRLKQLAKYET 275 (323)
T ss_pred eEEecCCCceEEEccCcchhhhhhccCCCC
Confidence 999999999999999999988888876543
No 82
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5e-29 Score=197.66 Aligned_cols=245 Identities=17% Similarity=0.307 Sum_probs=205.9
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
+...+|.||...|+.+.|+++...+++++.|..||||.............|..+|+.+..+|.++||++++.|++.-..|
T Consensus 252 q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 252 QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 44677899999999999999999999999999999999877777778889999999999999999999999999999999
Q ss_pred CCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeec
Q 023772 89 VSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSV 164 (277)
Q Consensus 89 ~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~ 164 (277)
.+++..+..... ....+++..|+|||.+|.+|..|+.+++||+.++. ....+..|.+++..+.|+.+. ++++..
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEec
Confidence 999988766543 23468999999999999999999999999998765 455677899999999998665 889999
Q ss_pred CCcEEEEEccCCcccccC---CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC--ceEEEEeccccceeeeeeEecCC
Q 023772 165 DGTVRTFDIRVGRELSDD---LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG--ELLQEYKGHICKSFKTDCCLTNS 239 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (277)
|+.|++||+|..+.+... ...++.+++|++.|++|++++.|=+|++++-.+. +++..+..|. .....+.|...
T Consensus 410 d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~ 487 (506)
T KOG0289|consen 410 DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEH 487 (506)
T ss_pred CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeeccc
Confidence 999999999987655442 3347999999999999999988877777775544 3444555453 23444567788
Q ss_pred CceEEeecCCCeEEEEEC
Q 023772 240 DAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 240 ~~~l~sgs~d~~i~iwd~ 257 (277)
..+++++|.|..++++.+
T Consensus 488 aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 488 AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceEEeeccchhheEEeec
Confidence 899999999999988764
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=203.09 Aligned_cols=250 Identities=20% Similarity=0.298 Sum_probs=203.0
Q ss_pred CCcEEEEEEeCCCC--EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 18 EGAVLAARFNGDGN--YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 18 ~~~V~~~~~~~~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
.++|.+++|+|... ..+|+| -.+.||+..+....+++..-...+.++.|-.||+++++|...|.|++||+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 46799999999543 444444 48999998887777777767789999999999999999999999999997776778
Q ss_pred EEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEEEE
Q 023772 96 RKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTF 171 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~ 171 (277)
+.+.+|+.+|..+.|+|++ .++++|+.|+.+++||+.+.. . ...+..|.+.+.+.++.+. .+++|++||+|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8999999999999999874 568889999999999998654 2 3356788888888777653 59999999999999
Q ss_pred EccCC-cc-cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772 172 DIRVG-RE-LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248 (277)
Q Consensus 172 d~~~~-~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 248 (277)
|.+.. .. ....++.||..+.+-|.|+.|++++. ..+++||+.+| +.+..+..|.+. .++.++..++..|.+|+-
T Consensus 182 DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~Kt--VTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 182 DTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKT--VTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccce--EEEEEeecCCceEeeccc
Confidence 99976 32 33467899999999999998888765 47999999865 444455546543 455667788899999999
Q ss_pred CCeEEEEECcCccceeeeccCcceeE
Q 023772 249 DGYIYFWDLVDASVVAKFKAHSLVVK 274 (277)
Q Consensus 249 d~~i~iwd~~~~~~~~~~~~h~~~v~ 274 (277)
|+.+++||+.+.+.++..+-......
T Consensus 259 D~~VKVfd~t~~Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWKYPGPVLS 284 (487)
T ss_pred ccceEEEEccceEEEEeeecccceee
Confidence 99999999999999988876544433
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.5e-29 Score=191.30 Aligned_cols=246 Identities=24% Similarity=0.445 Sum_probs=202.0
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC--------------------
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-------------------- 71 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-------------------- 71 (277)
..+.||++.|..++.......|.++|.|.+.+||.+++|.++.++.+|.+.|++++|++.
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 446799999999998887789999999999999999999999999999999999988665
Q ss_pred --------------------------------------------------------------CCEEEEEeCCCcEEEEEC
Q 023772 72 --------------------------------------------------------------NSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 72 --------------------------------------------------------------~~~l~t~s~d~~v~~wd~ 89 (277)
++.++|+|+|.+..+||+
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDV 301 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDV 301 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeee
Confidence 455777888888889999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecCCcE
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVDGTV 168 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i 168 (277)
++++++..+.+|..+.+-+.-+|..+++++.+.|.+.++||.+. ....+..+.+|.+.+.+..+.. ..+++|+.|.++
T Consensus 302 Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTv 380 (481)
T KOG0300|consen 302 ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTV 380 (481)
T ss_pred ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecCCceeecCCCceE
Confidence 99999999999999999899999999999999999999999984 3456677899999999999874 559999999999
Q ss_pred EEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE----EEeccccceeeeeeEecCC--C
Q 023772 169 RTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ----EYKGHICKSFKTDCCLTNS--D 240 (277)
Q Consensus 169 ~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~ 240 (277)
++||++..+.... ....+++-++++..+..|+.-..++.+|+||+.-..+.+ .-.+| ..+...|++..+ -
T Consensus 381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgH--rRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGH--RRMVTCCAWLEEHPA 458 (481)
T ss_pred EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccc--ceeeeeeeccccCcc
Confidence 9999998764322 356789999999888899999999999999997544322 22345 344555555432 2
Q ss_pred ceEEeecCCCeEEEEECcCc
Q 023772 241 AHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd~~~~ 260 (277)
.-|.+++-|+.+.-|++..-
T Consensus 459 cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 459 CNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccccccceeeeeEeccc
Confidence 34778888999999998754
No 85
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.4e-29 Score=197.92 Aligned_cols=245 Identities=16% Similarity=0.300 Sum_probs=198.2
Q ss_pred EEEEE-eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEE
Q 023772 32 YCLSC-GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKF 110 (277)
Q Consensus 32 ~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~ 110 (277)
+++++ ..-..+-+|.+...........-.++|.++.-+|+|.+++.|.-.+.+++|.+.+|.++..+.+|-.+|+++.|
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f 131 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF 131 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE
Confidence 44443 22345566665544333322233578999999999999998889999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCc-------cCCCcceEeeccccCcEEEEEecC----CeEEEeecCCcEEEEEccCCccc
Q 023772 111 NEYSSVVVSAGYDQSLRAWDCR-------SHSTEPIQIIDSFQDSVMSVCLTK----TEIIGGSVDGTVRTFDIRVGREL 179 (277)
Q Consensus 111 ~~~~~~l~s~~~d~~i~iwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~d~~i~i~d~~~~~~~ 179 (277)
+.|+.+|+|||.||.|.+|++. .+..++...+..|.-+|..+.... ..+++.+.|.++++||+..+..+
T Consensus 132 s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL 211 (476)
T KOG0646|consen 132 SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL 211 (476)
T ss_pred eCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee
Confidence 9999999999999999999863 235567778888888888887754 34999999999999999998765
Q ss_pred cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC----------------CceEEEEeccccceeeeeeEecCCCce
Q 023772 180 SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST----------------GELLQEYKGHICKSFKTDCCLTNSDAH 242 (277)
Q Consensus 180 ~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (277)
.. ..+.++.+++++|.+..+..|+.+|.|.+.++.. +..+..+.||.....++..+++-||..
T Consensus 212 lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgtl 291 (476)
T KOG0646|consen 212 LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTL 291 (476)
T ss_pred EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccE
Confidence 54 4577899999999999999999999999887632 234567778877556777788999999
Q ss_pred EEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 243 VTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 243 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
|++|+.||++++||+...++++++..-.++|+.|
T Consensus 292 LlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 292 LLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL 325 (476)
T ss_pred EEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Confidence 9999999999999999999998887555555543
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=2.1e-28 Score=194.20 Aligned_cols=253 Identities=19% Similarity=0.225 Sum_probs=208.3
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..++++...+..+.++||+.|.++.++|..++..+.+|++|...|+++.++++...+++++.|..|++|...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 35778888888789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCC
Q 023772 99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVG 176 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~ 176 (277)
..|..+|+.+..+|.+++|++++.|++....|+++........-+..+-.+.+..+.|+. +.+|..|+.+++||+..+
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 999999999999999999999999999999999876432222222223345566666655 678899999999999877
Q ss_pred ccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE
Q 023772 177 RELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF 254 (277)
Q Consensus 177 ~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i 254 (277)
..... .+..+|..+.|+.+|-||++++.|+.|++||++.-+..++|...... .....+|.+.|.+++.++.|=+|++
T Consensus 380 ~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeecceeEEEE
Confidence 64432 46679999999999999999999999999999988888887765433 2455677888999999988877777
Q ss_pred EECc--CccceeeeccCcce
Q 023772 255 WDLV--DASVVAKFKAHSLV 272 (277)
Q Consensus 255 wd~~--~~~~~~~~~~h~~~ 272 (277)
++-. +...+.++.-|++.
T Consensus 459 ~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 459 CKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred Eecccccceeeehhhhcccc
Confidence 7633 45566777777643
No 87
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=2.1e-28 Score=204.00 Aligned_cols=245 Identities=20% Similarity=0.354 Sum_probs=201.7
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEE-EEEcC-CCCEEEEEeCCCcEEE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRD-VHVTA-DNSKLISCGGDRQIFY 86 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~-~~~~~-~~~~l~t~s~d~~v~~ 86 (277)
...+.||+..|..+++.+. ..++++|.||++++|+...+..+ ..+.+|.+-|.. +++.+ ++.++++|+.|.++.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIV 85 (745)
T ss_pred EEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEE
Confidence 4568899999999887655 48899999999999997655443 456777777776 77775 5557999999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-CeEEEeecC
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TEIIGGSVD 165 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d 165 (277)
|.+.+..+..++++|.+.|+++....++. ++|||.|.++++|-... ....+..|+..|.++..-+ +.+++|+.|
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~e~~~vTgsaD 160 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLPENTYVTGSAD 160 (745)
T ss_pred EecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh----hhcccCCcchheeeeeecCCCcEEeccCc
Confidence 99999999999999999999999988887 99999999999997643 2334778999999887654 459999999
Q ss_pred CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 166 GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 166 ~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
++|++|.-.+.......|...|+.+++-+++. +++++.||.|++|++ ++.++.++.+|.+..+... ...++..+++
T Consensus 161 KtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis--~~~~~~~Ivs 236 (745)
T KOG0301|consen 161 KTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS--MALSDGLIVS 236 (745)
T ss_pred ceeeeccCCchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cCceeeeeeccceEEEEEE--ecCCCCeEEE
Confidence 99999987554444455777899999998865 789999999999999 7889999999987666655 4566778999
Q ss_pred ecCCCeEEEEECcCccceeeec
Q 023772 246 GSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 246 gs~d~~i~iwd~~~~~~~~~~~ 267 (277)
.++|++++||+.. ++++.+.
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~ 256 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVIT 256 (745)
T ss_pred ecCCceEEEeecC--ceEEEEe
Confidence 9999999999987 5555544
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.1e-28 Score=203.44 Aligned_cols=238 Identities=16% Similarity=0.306 Sum_probs=202.1
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-----Cc
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-----GR 93 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-----~~ 93 (277)
+-+.+..|-|.++++++|...|.+.+||+.+...+.+.++|.+.+++++.+|+++.++|||.|++|++||.+- +.
T Consensus 413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 3577888999999999999999999999999999999999999999999999999999999999999999641 11
Q ss_pred e--eEEe-----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeec
Q 023772 94 V--IRKF-----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSV 164 (277)
Q Consensus 94 ~--~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~ 164 (277)
. +-++ ..-+..|.++.++||+++++.+-.|.++++|-+.+. +-...+.+|.-+|.++..++ ..+++|+.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~DSklivTgSA 570 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISPDSKLIVTGSA 570 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccCCcCeEEeccC
Confidence 1 1111 124678999999999999999999999999988753 33445678888888887765 55999999
Q ss_pred CCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCce
Q 023772 165 DGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAH 242 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (277)
|+.+++|-+.-|.+... .++..|.++.|-|+...+++++.|+.++-||-...+.++.+.+|....+ ..+.+|+|.+
T Consensus 571 DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~--cLav~~~G~~ 648 (888)
T KOG0306|consen 571 DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVW--CLAVSPNGSF 648 (888)
T ss_pred CCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheee--eeEEcCCCCe
Confidence 99999998876665444 3567899999999999999999999999999999999999999976543 3457899999
Q ss_pred EEeecCCCeEEEEECcCc
Q 023772 243 VTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 243 l~sgs~d~~i~iwd~~~~ 260 (277)
++++|.|.+||+|...+.
T Consensus 649 vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EEeccCCceeEeeeccCc
Confidence 999999999999997663
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=194.49 Aligned_cols=226 Identities=21% Similarity=0.394 Sum_probs=190.2
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV 94 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~ 94 (277)
++|...+.+++.++||+||++|+.|..+.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+++++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 48999999999999999999999999999999999999999999999999999998888999999999999999998888
Q ss_pred eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe-cCCeEEEeecCCcEEEEEc
Q 023772 95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL-TKTEIIGGSVDGTVRTFDI 173 (277)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~d~~i~i~d~ 173 (277)
+.++.+|.+.|.+|+...-.+.+-.|+.|+++++|++.. +...++..+...+-++++ +..++++|+.+|.|.+|++
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e---esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE---ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccc---cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeee
Confidence 999999999999999988777777777999999999943 223345666667777775 5677999999999999999
Q ss_pred cCCcccccC---C---------CC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCC----ceEEEEeccccceeeeeeE
Q 023772 174 RVGRELSDD---L---------GQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTG----ELLQEYKGHICKSFKTDCC 235 (277)
Q Consensus 174 ~~~~~~~~~---~---------~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~ 235 (277)
-+.+.+... + +. -|++++..|....+++|+.+|.+|+|-...+ +++..+. ...++...+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---~~GfVNsl~ 432 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---LVGFVNSLA 432 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc---cccEEEEEE
Confidence 877654321 1 11 4788999999999999999999999998776 3444443 234567778
Q ss_pred ecCCCceEEee
Q 023772 236 LTNSDAHVTGG 246 (277)
Q Consensus 236 ~~~~~~~l~sg 246 (277)
|+++|+++++|
T Consensus 433 f~~sgk~ivag 443 (479)
T KOG0299|consen 433 FSNSGKRIVAG 443 (479)
T ss_pred EccCCCEEEEe
Confidence 89999866554
No 90
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.3e-28 Score=183.01 Aligned_cols=207 Identities=23% Similarity=0.383 Sum_probs=175.1
Q ss_pred ccccccceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-CCEEEEEeCCCc
Q 023772 6 LPRTEANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-NSKLISCGGDRQ 83 (277)
Q Consensus 6 ~~~~~~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~ 83 (277)
+|..+...++.|+..|.++.|++ .++.++++|.|++||+|+..-+..+.+|.+|...|....|+|. .+.++++|.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 36667888999999999999998 4567778899999999999999999999999999999999995 568899999999
Q ss_pred EEEEECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---E
Q 023772 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---I 159 (277)
Q Consensus 84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 159 (277)
+++||++.......+..|..++.++.|+.. .++++||+.|+.|+.||++.-. .++..+.+|.-.|..+.++|.. +
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-TPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc-ccceeecCCceEEEEEecCcchhhHh
Confidence 999999764433448999999999999864 6789999999999999998754 4566778888889999998865 8
Q ss_pred EEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEEC
Q 023772 160 IGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~ 213 (277)
++++.|-++|+||...+.. ....+.+-+..+.|++ +..++++.+.|..+++|+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999999975532 2234555677888887 4578999999999999985
No 91
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.9e-28 Score=179.09 Aligned_cols=240 Identities=17% Similarity=0.251 Sum_probs=189.0
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~wd 88 (277)
-.+|++.|-.+..+--|+.|+|||.|++|||+...+. .++.++.+|.+||+.++|.. -|..|++++.||+|.+|.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3679999999888888999999999999999987653 56789999999999999975 688999999999999999
Q ss_pred CCCCc--eeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCcEEEEEecC-------
Q 023772 89 VSTGR--VIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVMSVCLTK------- 156 (277)
Q Consensus 89 ~~~~~--~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~------- 156 (277)
-++++ ....+..|...|++++|-|. +-+|++++.||.|.+.+.+... -....+...|...+.++++.|
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 88773 34556789999999999876 6689999999999999987641 112233445666666666543
Q ss_pred ---------CeEEEeecCCcEEEEEccCCc----ccccCCCCCeeEEEEeCCC----CEEEEEecCCeEEEEECCCC---
Q 023772 157 ---------TEIIGGSVDGTVRTFDIRVGR----ELSDDLGQPVNCISMSNDG----NCILASCLDSTLRLLDRSTG--- 216 (277)
Q Consensus 157 ---------~~~~~g~~d~~i~i~d~~~~~----~~~~~~~~~v~~~~~s~~~----~~l~~~~~d~~i~~wd~~~~--- 216 (277)
..|++|+.|..++||+...++ .....+..-|+.++|.|.- .+|+++++||++.||..+..
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 248999999999999998753 1233455678999999853 57999999999999987532
Q ss_pred ---ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 217 ---ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+++..| +...-..++|..|+.|+.+.-|+.+.+|.-.
T Consensus 247 wk~tll~~f-----~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEF-----PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccC-----CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 222222 2233445678889999999999999999654
No 92
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.3e-26 Score=166.92 Aligned_cols=241 Identities=17% Similarity=0.237 Sum_probs=190.8
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEc------CCCC---------eeEEEEeccCccEEEEEEcCCCCEEEEE
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN------PHRG---------IHIKTYKSHGREVRDVHVTADNSKLISC 78 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd------~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~ 78 (277)
+-.-..+|.+++|.|.|.+.+.||+..++||-- ++.+ ...+.-+.|.+.|.|.+|+|++++|+||
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 344667899999999999999999999999963 2111 1123345689999999999999999999
Q ss_pred eCCCcEEEEECCCCce-----eEEeecccCceeEEEEecC----CCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCc
Q 023772 79 GGDRQIFYWDVSTGRV-----IRKFRGHESEVNAVKFNEY----SSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDS 148 (277)
Q Consensus 79 s~d~~v~~wd~~~~~~-----~~~~~~h~~~v~~i~~~~~----~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 148 (277)
|.|++||+...+...+ -..|.-|.+.|..++|..+ +.++++++ .|..|.+-|+. .......+.+|.+.
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~--~g~~~~a~sghtgh 185 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG--RGQGFHALSGHTGH 185 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC--CCCcceeecCCccc
Confidence 9999999987654332 2357789999999999754 44666654 35555555554 34556777788887
Q ss_pred EEEE-EecCCeEEEeecCCcEEEEEccCCccccc---------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772 149 VMSV-CLTKTEIIGGSVDGTVRTFDIRVGRELSD---------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218 (277)
Q Consensus 149 ~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~ 218 (277)
+.++ .+++-.+++|+.|++|++||++-...+.. .....|.+++++|.|+.|++|..|....+||++-+..
T Consensus 186 ilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 186 ILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 7654 67888899999999999999987654432 1235799999999999999999999999999999999
Q ss_pred EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
++.|..|... +...-|+|...|+.++|.|..|++=|+.
T Consensus 266 iq~f~phsad--ir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 266 IQRFHPHSAD--IRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred eeeeCCCccc--eeEEEeCCCceEEEEecccceEEEeecc
Confidence 9999888543 4555689999999999999999999986
No 93
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2e-27 Score=181.93 Aligned_cols=247 Identities=18% Similarity=0.254 Sum_probs=188.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG 100 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~ 100 (277)
.+|+.|++.|.+||.|+.||.|.|||..|...-+.+.+|..+|.+++|+++|.+|+|+|.|..|++||+..|.+++.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999988888999999999999999999999999999999999999999988877
Q ss_pred ccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeec---cccCcE---EEEEecCCeEEEeecCCcEEEEEc
Q 023772 101 HESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIID---SFQDSV---MSVCLTKTEIIGGSVDGTVRTFDI 173 (277)
Q Consensus 101 h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~g~~d~~i~i~d~ 173 (277)
..++|+...|+|... .++.+-.+..-.+-++... ....... .....+ ..+...++++++|...|.+.+||.
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 578999999998543 3333333333333333211 1110000 000111 124456788999999999999999
Q ss_pred cCCcccccC---CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-------Cc--eEEEEeccccceeeeeeEecCCCc
Q 023772 174 RVGRELSDD---LGQPVNCISMSNDGNCILASCLDSTLRLLDRST-------GE--LLQEYKGHICKSFKTDCCLTNSDA 241 (277)
Q Consensus 174 ~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~ 241 (277)
.+.+.+... .-+.|..+.|+..|.+|+..+.|+.||.|+.+. ++ +.+.+....++.....|||+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 887654321 236789999999999999999999999999752 12 223343334455667789999999
Q ss_pred eEEeec-CCCeEEEEECcCccceeeeccCc
Q 023772 242 HVTGGS-EDGYIYFWDLVDASVVAKFKAHS 270 (277)
Q Consensus 242 ~l~sgs-~d~~i~iwd~~~~~~~~~~~~h~ 270 (277)
|+..|+ ....+|||.-..|.+++.|.|-.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCc
Confidence 987765 56679999999999999998765
No 94
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-27 Score=188.82 Aligned_cols=244 Identities=23% Similarity=0.336 Sum_probs=193.5
Q ss_pred eccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCC----------eeEEEEeccCccEEEEEEcCC-CCEEEEEeCCC
Q 023772 15 KGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRG----------IHIKTYKSHGREVRDVHVTAD-NSKLISCGGDR 82 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~ 82 (277)
--|.+.|+.+++-|+. ..+++.+..+.+.|||..+. .+-..+.+|.+.-.++.|++. ..++++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3599999999999966 56667899999999996532 122378899988899999974 45899999999
Q ss_pred cEEEEECCCCc-------eeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772 83 QIFYWDVSTGR-------VIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154 (277)
Q Consensus 83 ~v~~wd~~~~~-------~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
+|.+||+.... +...+.+|...|..++|++. ..+|++++.|+.+.|||.|+...++......|...+.++.+
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999996432 34568899999999999986 45789999999999999997434445556778889999998
Q ss_pred cCC---eEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC-----------
Q 023772 155 TKT---EIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG----------- 216 (277)
Q Consensus 155 ~~~---~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~----------- 216 (277)
++. .+++|+.|+++.+||+|.-.... ..+...|.++.|+|.. ..|++++.|+.+.+||+..-
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 864 38999999999999999765432 2456789999999965 56788899999999998542
Q ss_pred ---ceEEEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcCc
Q 023772 217 ---ELLQEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~~ 260 (277)
+++....||... +.+..+.|...+ +++.++|+.+.||+..+.
T Consensus 361 gppEllF~HgGH~~k--V~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAK--VSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCcceeEEecCcccc--cccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 223455677544 466677888877 567899999999998754
No 95
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.6e-26 Score=166.45 Aligned_cols=242 Identities=23% Similarity=0.369 Sum_probs=185.8
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--CCe---eEEEEeccCccEEEEEEcCC----CCEEEEEe-CCCc
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--RGI---HIKTYKSHGREVRDVHVTAD----NSKLISCG-GDRQ 83 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--~~~---~~~~~~~h~~~v~~~~~~~~----~~~l~t~s-~d~~ 83 (277)
.+.|++.|.|.+|+|+|++|++||+|.+|++--.+ +.. .-..|..|.+.|+.++|..+ +..|++++ .|..
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 36799999999999999999999999999996433 322 23468889999999999643 44566655 4777
Q ss_pred EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc-----cCcEEEEEecC--
Q 023772 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF-----QDSVMSVCLTK-- 156 (277)
Q Consensus 84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~-- 156 (277)
|.+-|..+|+....+.+|++-|.++ ++-++-++++|+.|.+|+.||++-+......--..+ ...+.+++.+|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsg 243 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSG 243 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCc
Confidence 8888888999999999999999865 455678999999999999999986543222111111 13455566554
Q ss_pred CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC---c-eEEEEecccccee
Q 023772 157 TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG---E-LLQEYKGHICKSF 230 (277)
Q Consensus 157 ~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~---~-~~~~~~~~~~~~~ 230 (277)
..+++|-.|....+||++.++.+.. .+...|+|+.|+|..-|+++++.|..|++=|++-. + .+.....|..+
T Consensus 244 rll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-- 321 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-- 321 (350)
T ss_pred ceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc--
Confidence 5589999999999999999887755 45568999999999999999999999999998631 1 12222334333
Q ss_pred eeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 231 KTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 231 ~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
...|-+.|.+.-+++.|.|.++.+|-++
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 4556788999889999999999999764
No 96
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.8e-27 Score=196.03 Aligned_cols=233 Identities=21% Similarity=0.319 Sum_probs=190.1
Q ss_pred eeeccCCcEEE-EEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 13 VLKGHEGAVLA-ARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 13 ~l~~H~~~V~~-~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.+.+|.+-|.. ++|.+ ++-.+++|+.|..+.+|......++.++++|...|-+++...++. +++||+|.++++|-
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~-- 128 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR-- 128 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec--
Confidence 35678888877 88886 555689999999999999999999999999999999999877766 99999999999995
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVR 169 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~ 169 (277)
.+++..++.+|+.+|+++...|.+ .++||+.|.+|++|.-. .....+..|.+.|..+..-+. .+++++.||.|+
T Consensus 129 ~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~----~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir 203 (745)
T KOG0301|consen 129 IGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG----TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIR 203 (745)
T ss_pred chhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC----chhhhhccchhheeeeEEecCCCeEeecCCceEE
Confidence 467788899999999999999987 88999999999999752 345667789999988887655 899999999999
Q ss_pred EEEccCCcccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772 170 TFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 170 i~d~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
.|++ .++.+...++ .-+.+++...++..++++++|+++++|+.. .+.+.+..-.... .. ++..++|. +++|+
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsi-Ws-a~~L~NgD-Ivvg~ 277 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSI-WS-AKVLLNGD-IVVGG 277 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccce-EE-EEEeeCCC-EEEec
Confidence 9999 6666666554 468889877778889999999999999987 6777765432222 22 22333333 78889
Q ss_pred CCCeEEEEECcC
Q 023772 248 EDGYIYFWDLVD 259 (277)
Q Consensus 248 ~d~~i~iwd~~~ 259 (277)
+||.||||..+.
T Consensus 278 SDG~VrVfT~~k 289 (745)
T KOG0301|consen 278 SDGRVRVFTVDK 289 (745)
T ss_pred cCceEEEEEecc
Confidence 999999998764
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-26 Score=175.92 Aligned_cols=242 Identities=19% Similarity=0.377 Sum_probs=183.3
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC------------------------------------eeEE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG------------------------------------IHIK 54 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~------------------------------------~~~~ 54 (277)
...|+||.+.|++++|+.||++|+|++.|++||+|++... ..+.
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4568999999999999999999999999999999986421 0111
Q ss_pred EE-----------------------eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEe
Q 023772 55 TY-----------------------KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN 111 (277)
Q Consensus 55 ~~-----------------------~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~ 111 (277)
.+ +.|+-++-++-...++++|++++.|.+|.+|++. |+.+.++..........+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 11 1234445555566667899999999999999998 88888887766677788999
Q ss_pred cCCCEEEEEeCCCcEEEEeCcc------CCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC----cc-
Q 023772 112 EYSSVVVSAGYDQSLRAWDCRS------HSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG----RE- 178 (277)
Q Consensus 112 ~~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~----~~- 178 (277)
|+|+++++++.-..|++|.+-- .+..++..+.+|+..+.+.+++++ .+++.+.||++++||..-. +.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 9999999999999999998632 123455667889999999998765 5999999999999997421 11
Q ss_pred --cc------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC
Q 023772 179 --LS------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250 (277)
Q Consensus 179 --~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 250 (277)
+. ...+...-.++++|+|+.|+.+ ....|++|..++++...++..-. ..-+...+++++|+++++.+ |+
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h-~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIH-STTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhh-cCceeeEEecCCCcEEeeec-ce
Confidence 11 1112333479999999976665 45679999999988776665321 23456678899999999976 67
Q ss_pred eEEEEE
Q 023772 251 YIYFWD 256 (277)
Q Consensus 251 ~i~iwd 256 (277)
.+++..
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 888875
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=5.9e-29 Score=208.24 Aligned_cols=222 Identities=22% Similarity=0.414 Sum_probs=194.7
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
+.+..|...|.++..-..++.+++|+.|..+-+|....-..+..+.+|..+|.++.|++...+|++|+.+|+||+||++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 34567999999999878889999999999999999877777778999999999999999999999999999999999999
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF 171 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 171 (277)
++.++++.+|...+.+++|+|.+.++++|+.|+.+++||.+... ++..|
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-------------------------------c~~~~ 150 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-------------------------------CSHTY 150 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC-------------------------------ceeee
Confidence 99999999999999999999999999999999999999987422 12222
Q ss_pred EccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCe
Q 023772 172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY 251 (277)
Q Consensus 172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 251 (277)
+ .+...+.++.|+|+|.+++.+++|..+++||+..|+...+|..|.+....++ +.|.+.++++|+.|++
T Consensus 151 ~---------s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle--~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 151 K---------SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE--FHPLEVLLAPGSSDRT 219 (825)
T ss_pred c---------CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc--cCchhhhhccCCCCce
Confidence 1 1234578899999999999999999999999999999999999987776665 7888889999999999
Q ss_pred EEEEECcCccceeeeccCcceeEe
Q 023772 252 IYFWDLVDASVVAKFKAHSLVVKL 275 (277)
Q Consensus 252 i~iwd~~~~~~~~~~~~h~~~v~~ 275 (277)
+++||+++.+++...+.....|+.
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~ 243 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRS 243 (825)
T ss_pred eeeeccceeEEeeccCCccCCcee
Confidence 999999999998888776555554
No 99
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1e-26 Score=192.51 Aligned_cols=255 Identities=22% Similarity=0.396 Sum_probs=196.3
Q ss_pred EEEEEeC---CCCEEEEEeCCCcEEEEcCCCCe------eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 22 LAARFNG---DGNYCLSCGKDRTIRLWNPHRGI------HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 22 ~~~~~~~---~~~~l~s~s~d~~v~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.+..|++ ....|+-+.+||.|.++|..... .++.+..|...|..+.|.|....|++++.|.+++.||++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 3466664 45688899999999999976532 24667789999999999998789999999999999999999
Q ss_pred ceeEE--eecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCc------------------ceEee-------cc
Q 023772 93 RVIRK--FRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTE------------------PIQII-------DS 144 (277)
Q Consensus 93 ~~~~~--~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~------------------~~~~~-------~~ 144 (277)
+++.. +.+|...|.+++|.+.. ..|++|+.||.|.|||++..... +.... ..
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 98776 89999999999999874 57899999999999998753210 00000 00
Q ss_pred ----ccCcEEEEEe-cCCeEEEeec-CCcEEEEEccCCcccccC----------C---CCCeeEEEEeCCCCEEEEEecC
Q 023772 145 ----FQDSVMSVCL-TKTEIIGGSV-DGTVRTFDIRVGRELSDD----------L---GQPVNCISMSNDGNCILASCLD 205 (277)
Q Consensus 145 ----~~~~~~~~~~-~~~~~~~g~~-d~~i~i~d~~~~~~~~~~----------~---~~~v~~~~~s~~~~~l~~~~~d 205 (277)
....|+.+.+ +...|++++. |+.|++||++........ + ..-+.++..+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 1122333333 3445777766 999999999976543211 1 1246788888899999999999
Q ss_pred CeEEEEECCCC--ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCcceeEee
Q 023772 206 STLRLLDRSTG--ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHSLVVKLL 276 (277)
Q Consensus 206 ~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~ 276 (277)
+.|++||+.+. .++..|.++....+....+.+|++.++++|+.|...++|.+.+.+. ...+.+|...|..+
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V 366 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV 366 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE
Confidence 99999999753 4567788887777777778899999999999999999999998665 46667888777654
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=3.8e-26 Score=173.52 Aligned_cols=255 Identities=20% Similarity=0.320 Sum_probs=188.3
Q ss_pred eeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCe------------eE---EEEeccCccEEEEEEcC-CCCEEE
Q 023772 14 LKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGI------------HI---KTYKSHGREVRDVHVTA-DNSKLI 76 (277)
Q Consensus 14 l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~------------~~---~~~~~h~~~v~~~~~~~-~~~~l~ 76 (277)
-+-|.+.|+++...+ +|+|++||+.||.+.+||++... ++ ..-.+|...|.++.|-| +...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 457999999999987 78999999999999999986532 10 01135788899999988 677899
Q ss_pred EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE
Q 023772 77 SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC 153 (277)
Q Consensus 77 t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 153 (277)
++|.|.++|+||+++.+....|+ -+..|.+-+++|- ..++++|..|-+|++.|+.++.. ..++.+|.+.+.++.
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~--sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF--SHTLSGHRDGVLAVE 195 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc--eeeeccccCceEEEE
Confidence 99999999999999988776665 4556666666653 45789999999999999987654 456788999999999
Q ss_pred ecCCe---EEEeecCCcEEEEEccCCc-cc----------------ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 154 LTKTE---IIGGSVDGTVRTFDIRVGR-EL----------------SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 154 ~~~~~---~~~g~~d~~i~i~d~~~~~-~~----------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
++|.. +++|+.||.|++||+|... ++ ...+...++.++|+.++.++++.+.|..+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 98865 8899999999999998541 11 0123356899999999999999999999999999
Q ss_pred CCCceE-EEEec--c---ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772 214 STGELL-QEYKG--H---ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274 (277)
Q Consensus 214 ~~~~~~-~~~~~--~---~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~ 274 (277)
.+|+-- +.|.. | ....+... +... ..++.-=.|+.+.++++-+++.+..++.|=..|.
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s--~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~ 339 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVHIQ-SMDS--DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRIN 339 (397)
T ss_pred ccCcccccccccccccccccceEEEe-eccc--ceEEEEecCCeEEEEEccCceEEEeeecccceee
Confidence 876431 11111 0 11111111 1111 1122222457888899888888888888844443
No 101
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.6e-27 Score=198.44 Aligned_cols=203 Identities=21% Similarity=0.304 Sum_probs=162.3
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYW 87 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~w 87 (277)
++...+.||.+.|+.+.|+.++ +|+|+|.|.+||+|++....+++.|. |...|+|++|+| |.++|++|+-|++|+||
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW 437 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW 437 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence 4455678999999999999874 88999999999999999999999996 899999999999 66899999999999999
Q ss_pred ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc------cCcEEEEEec---CCe
Q 023772 88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF------QDSVMSVCLT---KTE 158 (277)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~---~~~ 158 (277)
++...+++. +..-..-|++++|.|+|+..+.|+.+|.+++|+...........+..+ ...|+.+.+. ++.
T Consensus 438 sI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 438 SISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred ecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 998877664 333458899999999999999999999999999865432211111111 1256666654 456
Q ss_pred EEEeecCCcEEEEEccCCcccccCC---C-CCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772 159 IIGGSVDGTVRTFDIRVGRELSDDL---G-QPVNCISMSNDGNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 159 ~~~g~~d~~i~i~d~~~~~~~~~~~---~-~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~ 214 (277)
+++.+.|..|||||.+....+.... . ..-....|+.+|++|+++++|..+++|+..
T Consensus 517 vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 517 VLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred EEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 8999999999999997655433221 1 223456899999999999999999999973
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.2e-26 Score=200.68 Aligned_cols=249 Identities=18% Similarity=0.316 Sum_probs=190.2
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC------------------CeeEEEEeccCccEEEEEEcCCCCE
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR------------------GIHIKTYKSHGREVRDVHVTADNSK 74 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~ 74 (277)
+...|.+.|+|++|++||++||+||.|+.|-||.... -+....+.+|...|..++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 3467999999999999999999999999999998552 1367789999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe--ecc--ccCcEE
Q 023772 75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI--IDS--FQDSVM 150 (277)
Q Consensus 75 l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~--~~~~~~ 150 (277)
++++|.|++|.+|+..+.++++.+.+|.+.|-.+.|.|-|++|++-+.|++|++|.......+.... +.. ......
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~ 223 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFL 223 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceee
Confidence 9999999999999999999999999999999999999999999999999999999976543322211 010 011234
Q ss_pred EEEecC--CeEEEee-cC---CcEEEEEccCCc--ccccCCCCCeeEEEEeCC------C-------C----EEEEEecC
Q 023772 151 SVCLTK--TEIIGGS-VD---GTVRTFDIRVGR--ELSDDLGQPVNCISMSND------G-------N----CILASCLD 205 (277)
Q Consensus 151 ~~~~~~--~~~~~g~-~d---~~i~i~d~~~~~--~~~~~~~~~v~~~~~s~~------~-------~----~l~~~~~d 205 (277)
.+.++| ++++++. .. -++.|.+=.+-. .-...|..++.++.|+|. . + .+++|+.|
T Consensus 224 RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqD 303 (942)
T KOG0973|consen 224 RLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQD 303 (942)
T ss_pred ecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCC
Confidence 444544 4566542 12 245554432211 112345679999999881 1 1 57889999
Q ss_pred CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc
Q 023772 206 STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV 262 (277)
Q Consensus 206 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~ 262 (277)
++|-+|.....+++-....-. ...+.+.+++|||..|..+|.||+|.+...++.++
T Consensus 304 rSlSVW~T~~~RPl~vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 304 RSLSVWNTALPRPLFVIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ccEEEEecCCCCchhhhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 999999997766654332211 22467889999999999999999999999988655
No 103
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3e-25 Score=170.01 Aligned_cols=246 Identities=15% Similarity=0.219 Sum_probs=190.6
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeC--CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGK--DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
....++..++-.|..++|-.....++.++. |.+||.-++.+.+.++.|.+|...|++++.+|.++.++++|.|++|++
T Consensus 47 ~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrL 126 (311)
T KOG1446|consen 47 KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRL 126 (311)
T ss_pred ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEe
Confidence 334556677788999999887777776666 999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccc---cCcEEEEEec--CCeEEE
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF---QDSVMSVCLT--KTEIIG 161 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~ 161 (277)
||++..++..-+.....++ ++|.|.|-++|.+.....|++||+|.....+...+.-. ......+.++ ++.++.
T Consensus 127 WDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 127 WDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred eEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 9999877765554433344 78999999999998888999999998777776665432 2334445554 556888
Q ss_pred eecCCcEEEEEccCCcccccCC-----CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-ccceeeeeeE
Q 023772 162 GSVDGTVRTFDIRVGRELSDDL-----GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH-ICKSFKTDCC 235 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~ 235 (277)
++..+.+.+.|--.|....... +.-.-..+|+||++++++|+.||+|.+|++++++.+..+.+. .... ...-
T Consensus 205 sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~--~~~~ 282 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPV--SCVR 282 (311)
T ss_pred EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCc--cccc
Confidence 8888999999987776433211 112246789999999999999999999999999999998874 3222 2233
Q ss_pred ecCCCceEEeecCCCeEEEEECcCc
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
+.|....++++ +..+-+|=....
T Consensus 283 fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 283 FNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred cCCceeeeeec--CceEEEEecccc
Confidence 67766566655 457888976644
No 104
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.1e-26 Score=190.83 Aligned_cols=261 Identities=19% Similarity=0.295 Sum_probs=204.8
Q ss_pred eeccCCcEEEEEEeC-----------CCCEEEEEeCCCcEEEEcCCCCeeEEEE--------------------------
Q 023772 14 LKGHEGAVLAARFNG-----------DGNYCLSCGKDRTIRLWNPHRGIHIKTY-------------------------- 56 (277)
Q Consensus 14 l~~H~~~V~~~~~~~-----------~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------------------------- 56 (277)
.-.|...|..+.--| -..-++|||.|++||+||+..+..-.++
T Consensus 365 ~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~ 444 (1080)
T KOG1408|consen 365 MLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDAS 444 (1080)
T ss_pred eeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhcc
Confidence 446777777665433 0224679999999999997653211110
Q ss_pred -----------eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecC---CCEEEEEeC
Q 023772 57 -----------KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGY 122 (277)
Q Consensus 57 -----------~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~ 122 (277)
-.....+++++++|++++|++|..-|.++++|+...+....+..|.++|.++.|+.- .++|++++.
T Consensus 445 ~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 445 AGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 012346899999999999999999999999999998888889999999999999742 568999999
Q ss_pred CCcEEEEeCccCCCcceEeeccccCcEEEEEecCC----eEEEeecCCcEEEEEccC----CcccccC----CCCCeeEE
Q 023772 123 DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT----EIIGGSVDGTVRTFDIRV----GRELSDD----LGQPVNCI 190 (277)
Q Consensus 123 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~d~~i~i~d~~~----~~~~~~~----~~~~v~~~ 190 (277)
|+-|.+||... +....+.+..|...++++.+... .+++++.|+.|.+ +... +..+... ....+..|
T Consensus 525 dRlIHV~Dv~r-ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 525 DRLIHVYDVKR-NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred CceEEEEeccc-ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEe
Confidence 99999999864 34567788889999999988643 3888999988764 3221 2222222 23468899
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccc-eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 191 SMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICK-SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 191 ~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
++.|..+++++++.|+.|+|||.+++++.+.|++.... ....-..+.|.|.|+++...|.++.++|..+|+++.+..||
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred eeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 99999999999999999999999999999999874322 22334456788999999999999999999999999999999
Q ss_pred cceeEee
Q 023772 270 SLVVKLL 276 (277)
Q Consensus 270 ~~~v~~~ 276 (277)
+++|+-+
T Consensus 683 sE~VTG~ 689 (1080)
T KOG1408|consen 683 SEAVTGV 689 (1080)
T ss_pred chheeee
Confidence 9998754
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.6e-27 Score=193.63 Aligned_cols=205 Identities=21% Similarity=0.373 Sum_probs=170.4
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC--c----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772 70 ADNSKLISCGGDRQIFYWDVSTG--R----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID 143 (277)
Q Consensus 70 ~~~~~l~t~s~d~~v~~wd~~~~--~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 143 (277)
|.+++|+|||.||.|++|+.... + .+.+++.|...|+.+....+++.++++|.|.+|++|+..........++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 45667999999999999998642 1 36778899999999999999999999999999999998765323444567
Q ss_pred cccCcEEEEEe-c--CCeEEEeecCCcEEEEEccCCcc--cc-----------cCCCCCeeEEEEeCCCCEEEEEecCCe
Q 023772 144 SFQDSVMSVCL-T--KTEIIGGSVDGTVRTFDIRVGRE--LS-----------DDLGQPVNCISMSNDGNCILASCLDST 207 (277)
Q Consensus 144 ~~~~~~~~~~~-~--~~~~~~g~~d~~i~i~d~~~~~~--~~-----------~~~~~~v~~~~~s~~~~~l~~~~~d~~ 207 (277)
.|.+.|.+++. . ...+++|+.|+.|.+||+..+.. +. .....++.+++.++.|..|++|+..+-
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 78888877776 3 34488999999999999997732 10 122357999999999999999999999
Q ss_pred EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
|++||.++++.+..+.||...+ .....++||..+.++|+||+|++||+...+++.++..|...|=.|
T Consensus 195 lr~wDprt~~kimkLrGHTdNV--r~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL 261 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNV--RVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWAL 261 (735)
T ss_pred eEEeccccccceeeeeccccce--EEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEE
Confidence 9999999999999999997554 334578999999999999999999999999999999998876443
No 106
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.1e-25 Score=184.11 Aligned_cols=245 Identities=18% Similarity=0.260 Sum_probs=198.8
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-cc
Q 023772 24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-HE 102 (277)
Q Consensus 24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-h~ 102 (277)
+.|+ ..+.|+.| .+..|.+|+..++........+...|+++.|+++|.+|+.|-.+|.|.+||.++.+.++++.. |.
T Consensus 183 ldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 5566 33455554 457999999999887666666688999999999999999999999999999999999999998 99
Q ss_pred CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc
Q 023772 103 SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS 180 (277)
Q Consensus 103 ~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~ 180 (277)
..|-+++|+ ...+.+|+.|+.|..+|++....... .+..|...+..+.++ ..++++|+.|+.+.|||....+...
T Consensus 261 ~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 261 SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 999999999 67999999999999999987543222 356677777777665 4569999999999999995544332
Q ss_pred --cCCCCCeeEEEEeCC-CCEEEEE--ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe--ecCCCeEE
Q 023772 181 --DDLGQPVNCISMSND-GNCILAS--CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG--GSEDGYIY 253 (277)
Q Consensus 181 --~~~~~~v~~~~~s~~-~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~d~~i~ 253 (277)
..+...|..++|+|- ...||+| +.|+.|++||..+++.+...... .++....+++..+-+++ |..++.|.
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~ 414 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQIT 414 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEE
Confidence 356679999999994 5667775 47999999999999998876533 35666778887755444 67888999
Q ss_pred EEECcCccceeeeccCcceeEee
Q 023772 254 FWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 254 iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
||+..+.+.+..+.+|+..|..|
T Consensus 415 lw~~ps~~~~~~l~gH~~RVl~l 437 (484)
T KOG0305|consen 415 LWKYPSMKLVAELLGHTSRVLYL 437 (484)
T ss_pred EEeccccceeeeecCCcceeEEE
Confidence 99999999999999999988765
No 107
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.7e-25 Score=195.19 Aligned_cols=245 Identities=22% Similarity=0.327 Sum_probs=196.8
Q ss_pred ccCCcEEEEEEeCCCCEEEEEe--CCCcEEEEcCCC------------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCC
Q 023772 16 GHEGAVLAARFNGDGNYCLSCG--KDRTIRLWNPHR------------GIHIKTYKSHGREVRDVHVTADNSKLISCGGD 81 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s--~d~~v~iwd~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d 81 (277)
.++..|.++..+|+|..++||| .|+.++||+... .+.+.+...|.+.|+|+.|+++|++|++||.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3456789999999999999999 999999998532 23456677899999999999999999999999
Q ss_pred CcEEEEECCC------------------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772 82 RQIFYWDVST------------------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID 143 (277)
Q Consensus 82 ~~v~~wd~~~------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 143 (277)
+.|.+|+... .+++..+.+|.+.|..+.|+|++.++++++.|++|.+|+.++. +.+..+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~~~~vl~ 168 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--ELLKVLR 168 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc--eeeeeee
Confidence 9999999762 1356788999999999999999999999999999999999886 6677888
Q ss_pred cccCcEEEEEecC--CeEEEeecCCcEEEEEccCCc---ccccCC-----CCCeeEEEEeCCCCEEEEEe----cCCeEE
Q 023772 144 SFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGR---ELSDDL-----GQPVNCISMSNDGNCILASC----LDSTLR 209 (277)
Q Consensus 144 ~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~---~~~~~~-----~~~v~~~~~s~~~~~l~~~~----~d~~i~ 209 (277)
.|+..|..+.++| .++++-+.|++|++|+...-. .+.... .....-+.|||||.+|++.. .-.++.
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 9999998888876 569999999999999965421 122221 23577899999999998863 344788
Q ss_pred EEECCCCceEEEEeccccceeeeeeEecC------C-------C----ceEEeecCCCeEEEEECcCcccee
Q 023772 210 LLDRSTGELLQEYKGHICKSFKTDCCLTN------S-------D----AHVTGGSEDGYIYFWDLVDASVVA 264 (277)
Q Consensus 210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~----~~l~sgs~d~~i~iwd~~~~~~~~ 264 (277)
|.+..+-+.-..+-||...... ..|+| . . ..+|+||.|++|-||.....+++-
T Consensus 249 IieR~tWk~~~~LvGH~~p~ev--vrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEV--VRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred EEecCCceeeeeeecCCCceEE--EEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 9999887777888888664332 23432 1 1 268899999999999987766653
No 108
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=4.2e-25 Score=165.59 Aligned_cols=210 Identities=19% Similarity=0.284 Sum_probs=171.3
Q ss_pred EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772 55 TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134 (277)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~ 134 (277)
.+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+++.++.+|++.|++++.+.+.+.++||+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCcceEeeccccCcEEEEEecC--CeEEEe-----ecCCcEEEEEccCCc-------cccc--CCCCCeeEEEEeCCCCE
Q 023772 135 STEPIQIIDSFQDSVMSVCLTK--TEIIGG-----SVDGTVRTFDIRVGR-------ELSD--DLGQPVNCISMSNDGNC 198 (277)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~g-----~~d~~i~i~d~~~~~-------~~~~--~~~~~v~~~~~s~~~~~ 198 (277)
.. +... ..+.++..+.++. +.++.. +..+.|.++|++... ++.. .....++.+-|+|-+.+
T Consensus 85 k~--la~~-k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 85 KQ--LATW-KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred cE--EEEe-ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 43 2222 2345566666654 443332 234568899998432 1111 22467889999999999
Q ss_pred EEEEecCCeEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 199 ILASCLDSTLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 199 l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
|++|.+||.|.+||.++|+ .+..-..|.. .+.+..++++..++++||.|.+-++||..+.++++++...
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 9999999999999999974 4455455543 5677889999999999999999999999999999998754
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=187.10 Aligned_cols=241 Identities=15% Similarity=0.294 Sum_probs=198.1
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
-+|.++-+.++|.++|+.|++|+.||.||+|+.... +...++.-+...|.+++.. +.+|++|+.+++|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 379999999999999999999999999999986554 3344444477788888775 4489999999999999988776
Q ss_pred eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEE
Q 023772 94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTF 171 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~ 171 (277)
.-.-+...+-+++.++++.+|++++.||.|-.|++-+..... ....+.+|..++..+.++++. |++.+.||.+++|
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc--hheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 544444456789999999999999999999999999876543 345577889999999988765 8899999999999
Q ss_pred EccCCcccccC----------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772 172 DIRVGRELSDD----------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241 (277)
Q Consensus 172 d~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (277)
|+..+...... ....+..++|+|+|..++..+.|+.|++|+.........+...........+.|+|+|.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCc
Confidence 99876543211 12345678999998888999999999999999988888887654444467788999999
Q ss_pred eEEeecCCCeEEEEECcC
Q 023772 242 HVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~ 259 (277)
|||+++.||.|-|||+++
T Consensus 246 YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEeeeccCCcEEEEeccc
Confidence 999999999999999995
No 110
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.2e-25 Score=168.15 Aligned_cols=228 Identities=18% Similarity=0.278 Sum_probs=179.0
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS--KLISCGGDRQIFYWDVS 90 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~d~~v~~wd~~ 90 (277)
....|.+||++++|+.||..+++|+.|+.+++||+.++ ....+..|.++|..++|.+... .|+|||+|+++|.||+.
T Consensus 67 a~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R 145 (347)
T KOG0647|consen 67 AQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR 145 (347)
T ss_pred hhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccC
Confidence 34579999999999999999999999999999999998 5778889999999999987665 79999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCcEEEEEecCCeEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDSVMSVCLTKTEIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 168 (277)
...++.++. -..++.+++.. ..+++.+..++.|.+|+++++..+.. ..--.++..+.++..+.+..+.|+.+|.+
T Consensus 146 ~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv 222 (347)
T KOG0647|consen 146 SSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRV 222 (347)
T ss_pred CCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceE
Confidence 988887776 45667666654 34777788899999999976533211 11123445566666677778999999999
Q ss_pred EEEEccCCcc-----c---cc---CC--CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeE
Q 023772 169 RTFDIRVGRE-----L---SD---DL--GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCC 235 (277)
Q Consensus 169 ~i~d~~~~~~-----~---~~---~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
.+..+..+.. + +. .. -.+|++++|+|....|++++.||++.+||-.....++++..|. ..+..|+
T Consensus 223 ~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~--qpItcc~ 300 (347)
T KOG0647|consen 223 AIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHP--QPITCCS 300 (347)
T ss_pred EEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCC--CccceeE
Confidence 9887765311 1 11 01 1368899999998999999999999999998877777776663 4457788
Q ss_pred ecCCCceEEee
Q 023772 236 LTNSDAHVTGG 246 (277)
Q Consensus 236 ~~~~~~~l~sg 246 (277)
|+.+|.++|-+
T Consensus 301 fn~~G~ifaYA 311 (347)
T KOG0647|consen 301 FNRNGSIFAYA 311 (347)
T ss_pred ecCCCCEEEEE
Confidence 88888887754
No 111
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.5e-26 Score=186.94 Aligned_cols=255 Identities=21% Similarity=0.291 Sum_probs=196.2
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~ 83 (277)
..++.|...|+.+.|.+....|++|+.|+++++|+++. -+++.+|++|.++|.|+++.++++.+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 36788999999999999999999999999999999832 2568899999999999999999999999999999
Q ss_pred EEEEECCCC----------ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc--ccCcEEE
Q 023772 84 IFYWDVSTG----------RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS--FQDSVMS 151 (277)
Q Consensus 84 v~~wd~~~~----------~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~ 151 (277)
|+.|++... .....+.+|+..|+.+++++....|++++.||+++.|+.....+ .++.. ......+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~---~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP---CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc---cccCCccccCCcce
Confidence 999965321 23456889999999999999999999999999999999765433 11111 1112233
Q ss_pred EEecCCe---EEEeecCCcEEEEEccCCcccccC---------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772 152 VCLTKTE---IIGGSVDGTVRTFDIRVGRELSDD---------LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 152 ~~~~~~~---~~~g~~d~~i~i~d~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
+.+.... .++...-+.-.++|+.....+... ....++-+..+|.+...+++..|+.|+++|..+++++
T Consensus 445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence 3333322 222222233333444433322111 1134677888999999999999999999999999999
Q ss_pred EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
.....|. ......++-|+|.+|++|+.|+.+++|.+....++....+|..
T Consensus 525 ~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 525 HSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK 574 (577)
T ss_pred hheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeeccccccc
Confidence 8888774 3445567889999999999999999999999999988888865
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-24 Score=163.73 Aligned_cols=252 Identities=17% Similarity=0.275 Sum_probs=183.5
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYW 87 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w 87 (277)
..+|.+-|.++.|++-|+.++|||.|++++|||... -.+....+.|.+.|..+.|.+ =|+.+++++.|+++++|
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 368999999999999999999999999999999543 246677889999999999965 36889999999999999
Q ss_pred ECCC---------CceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCc-------ceEe----eccc
Q 023772 88 DVST---------GRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTE-------PIQI----IDSF 145 (277)
Q Consensus 88 d~~~---------~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~-------~~~~----~~~~ 145 (277)
.-.. .....++...++.|.++.|.|. |-.+++++.||.++||+....... .++. ...+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 8621 1245667788899999999986 678999999999999986532110 0110 0112
Q ss_pred cCcEEEEEecC-----CeEEEeecC-----CcEEEEEccCCc-ccc-----cCCCCCeeEEEEeCCC----CEEEEEecC
Q 023772 146 QDSVMSVCLTK-----TEIIGGSVD-----GTVRTFDIRVGR-ELS-----DDLGQPVNCISMSNDG----NCILASCLD 205 (277)
Q Consensus 146 ~~~~~~~~~~~-----~~~~~g~~d-----~~i~i~d~~~~~-~~~-----~~~~~~v~~~~~s~~~----~~l~~~~~d 205 (277)
..+..++.+++ ..++.|+.+ +.+.||...... ... ..+..+|+.++|.|.- ..|++++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 23344555543 336777665 478888765432 221 1456799999999963 468999999
Q ss_pred CeEEEEECCCC--------------------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC---ccc
Q 023772 206 STLRLLDRSTG--------------------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD---ASV 262 (277)
Q Consensus 206 ~~i~~wd~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~---~~~ 262 (277)
| |+||.++.. +.+..|.+|.+.+.. +.+.--|..|++.+.||+||+|...= .++
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWr--v~wNmtGtiLsStGdDG~VRLWkany~n~~kC 325 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWR--VRWNMTGTILSSTGDDGCVRLWKANYNNLWKC 325 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEE--EEEeeeeeEEeecCCCceeeehhhhhhhhhee
Confidence 9 999998631 235567778766544 45566788999999999999997432 344
Q ss_pred eeeecc
Q 023772 263 VAKFKA 268 (277)
Q Consensus 263 ~~~~~~ 268 (277)
...+++
T Consensus 326 ~sv~~~ 331 (361)
T KOG2445|consen 326 TSVLKA 331 (361)
T ss_pred eeEEec
Confidence 444443
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=4.8e-25 Score=168.24 Aligned_cols=238 Identities=17% Similarity=0.240 Sum_probs=179.4
Q ss_pred cCCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC
Q 023772 3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR 82 (277)
Q Consensus 3 ~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~ 82 (277)
+++.|..+....-.|.+|+++++|.++ ..+++|+-||.||.+|+.++.. ..+..|..+|+++...+....+++||+|+
T Consensus 39 lYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~ 116 (323)
T KOG1036|consen 39 LYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDK 116 (323)
T ss_pred EEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCc
Confidence 456666666666679999999999985 5778999999999999988754 45667999999999999889999999999
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc---ccCcEEEEEecCCeE
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS---FQDSVMSVCLTKTEI 159 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 159 (277)
+|++||.....++.++.. ...|.+++.. ++.|+.|..|..+.+||++.... +.+.... .+-...++-+++..+
T Consensus 117 ~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~-~~q~reS~lkyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 117 TIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDE-PFQRRESSLKYQTRCVALVPNGEGY 192 (323)
T ss_pred cEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEcccccc-hhhhccccceeEEEEEEEecCCCce
Confidence 999999987666655553 3478777765 66888899999999999987532 2222111 122233333455779
Q ss_pred EEeecCCcEEEEEccCCccc----------ccC-----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 160 IGGSVDGTVRTFDIRVGREL----------SDD-----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~----------~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
+.++.||.+.+=.+...++. ... ...||++++|+|-.+.|+||+.||.|-+||+.+.+.+..|..
T Consensus 193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 99999999887554433111 011 124899999999988999999999999999999888877755
Q ss_pred cccceeeeeeEecCCCceEEeecC
Q 023772 225 HICKSFKTDCCLTNSDAHVTGGSE 248 (277)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~sgs~ 248 (277)
-. .-+...+|+.+|..||.|++
T Consensus 273 ~~--~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 273 YE--TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CC--CceEEEEeccCCCeEEEEec
Confidence 42 22445678899999998864
No 114
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.6e-26 Score=173.37 Aligned_cols=217 Identities=19% Similarity=0.357 Sum_probs=173.2
Q ss_pred eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
...+.+.+|...|+.++.......+.++|.|.+.++|.++++.|+.+|.+|.+.|+++.|++.+.++++++.|++-.||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45677899999999999988888999999999999999999999999999999999999999999999999999999997
Q ss_pred C------ccCC--------------------------------CcceEeeccccCcEEEEEe--cCCeEEEeecCCcEEE
Q 023772 131 C------RSHS--------------------------------TEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDGTVRT 170 (277)
Q Consensus 131 ~------~~~~--------------------------------~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~~i~i 170 (277)
. ..+. ..++..+.+|...+.++.+ .++++++++.|++..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 1100 0122334455666665554 3567999999999999
Q ss_pred EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-ceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772 171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG-ELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
||+++++.+.. .+.+..+.++-+|..+.+++++.|.+.|+||++.. ..+..|.||... .++..|..+ ..+++||
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt--VTS~vF~~d-d~vVSgS 375 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT--VTSVVFNTD-DRVVSGS 375 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc--eeEEEEecC-CceeecC
Confidence 99999986543 45667888889999999999999999999999743 446789999754 345556554 4588999
Q ss_pred CCCeEEEEECcCc-cceeeeccCc
Q 023772 248 EDGYIYFWDLVDA-SVVAKFKAHS 270 (277)
Q Consensus 248 ~d~~i~iwd~~~~-~~~~~~~~h~ 270 (277)
.|.+|++||+++. ..+.++...+
T Consensus 376 DDrTvKvWdLrNMRsplATIRtdS 399 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMRSPLATIRTDS 399 (481)
T ss_pred CCceEEEeeeccccCcceeeecCC
Confidence 9999999999884 3344444333
No 115
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.4e-24 Score=161.01 Aligned_cols=231 Identities=18% Similarity=0.254 Sum_probs=191.2
Q ss_pred ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
...+||.+.|..++|+| ..+++++++.|.++|+||...+++......- +.-..+.|+|++++++.++.|..|...|..
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-~eni~i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-GENINITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-CcceEEEEcCCCCEEEEecCcccEEEEEec
Confidence 34679999999999998 4578999999999999999999998888754 445568899999999999999999999998
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcE
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTV 168 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i 168 (277)
+-+.+...+ ....++-+.|+.++.+++.....|+|.|-... ..++++.+..|+..++++.++| .++++|+.|-.+
T Consensus 137 ~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 137 TYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALV 213 (313)
T ss_pred ccceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeecccccee
Confidence 877766554 45677789999888888888888999998764 5678888999999999888876 569999999999
Q ss_pred EEEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee
Q 023772 169 RTFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG 246 (277)
Q Consensus 169 ~i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 246 (277)
.+||+..--+ ....+.-+|+.++||.+|++|++||+|..|-|=++++|..+.++.-. .....+++.|...+||-+
T Consensus 214 SLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~---~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 214 SLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCE---GPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred eccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeecc---CCceeEEecCCCceeeEE
Confidence 9999875432 23456789999999999999999999999999999999988877532 223445788988888866
Q ss_pred cCC
Q 023772 247 SED 249 (277)
Q Consensus 247 s~d 249 (277)
..|
T Consensus 291 ~dd 293 (313)
T KOG1407|consen 291 CDD 293 (313)
T ss_pred ecC
Confidence 543
No 116
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.7e-23 Score=169.25 Aligned_cols=254 Identities=13% Similarity=0.121 Sum_probs=180.1
Q ss_pred ceeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDV 89 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~ 89 (277)
..+.+|.. +.+++|+|+++.+ ++++.|+.+++||..+++....+..+. .+..++++|+++.++++ +.|+.+++||+
T Consensus 25 ~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 25 RTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred EEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 34455544 6789999999877 567889999999999988877776554 35778999999877654 56899999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCc
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGT 167 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~ 167 (277)
.+++.+..+.. ...+.++.++|+++++++++.++ .+..||..+...... ...........+..++..++ ++..++.
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 103 ETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN-VLVDQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE-EEcCCCccEEEECCCCCEEEEEcCCCCE
Confidence 98887777653 34467899999999999988775 466778765432111 11111112223334445564 4456899
Q ss_pred EEEEEccCCcccccC-------C--CCCeeEEEEeCCCCEEEE-EecCCeEEEEECCCCceEEEEeccccceeeeeeEec
Q 023772 168 VRTFDIRVGRELSDD-------L--GQPVNCISMSNDGNCILA-SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT 237 (277)
Q Consensus 168 i~i~d~~~~~~~~~~-------~--~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
+++||+++++.+... . ......++|+|++++++. .+.++.+.+||.++++.+..+.... .....+++
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~ 257 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFT 257 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEEC
Confidence 999999887543221 0 112346889999998554 4556789999999888776543221 23456789
Q ss_pred CCCceEEee-cCCCeEEEEECcCccceeeeccCcce
Q 023772 238 NSDAHVTGG-SEDGYIYFWDLVDASVVAKFKAHSLV 272 (277)
Q Consensus 238 ~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~~h~~~ 272 (277)
|++.+|+++ ..++.|++||+.+++++.+++.+..+
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 999998876 56999999999999999998865443
No 117
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=177.91 Aligned_cols=204 Identities=17% Similarity=0.292 Sum_probs=169.4
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC------
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS------ 90 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~------ 90 (277)
-.++|.+++-+|+|.+|+.|...|.+.+|.+.+|..+..+.+|-.+|+++.|+.|+.+|+|||.||.|.+|++.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 35789999999999999999899999999999999999999999999999999999999999999999999873
Q ss_pred ---CCceeEEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEee
Q 023772 91 ---TGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGS 163 (277)
Q Consensus 91 ---~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~ 163 (277)
+-++.+.|..|+-+|+++...+. ..+++|+|.|.++++||+.....-.. -..+..+.++..+| ..+..|+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt---i~fp~si~av~lDpae~~~yiGt 236 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT---ITFPSSIKAVALDPAERVVYIGT 236 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE---EecCCcceeEEEcccccEEEecC
Confidence 23567889999999999998765 46899999999999999976533211 22345566666665 5589999
Q ss_pred cCCcEEEEEccCCc--c--------------c--ccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772 164 VDGTVRTFDIRVGR--E--------------L--SDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 164 ~d~~i~i~d~~~~~--~--------------~--~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
.+|.|.+.++..-. . + ...+. .+|+|++++.||+.|++|+.||.+++||..+.++++++.
T Consensus 237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 99999988764322 0 0 11122 389999999999999999999999999999988887665
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.7e-25 Score=164.67 Aligned_cols=207 Identities=22% Similarity=0.282 Sum_probs=167.2
Q ss_pred ccccceeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCC--CCEEEEEeCC
Q 023772 8 RTEANVLKGHEGAVLAARFNG--DGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTAD--NSKLISCGGD 81 (277)
Q Consensus 8 ~~~~~~l~~H~~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~--~~~l~t~s~d 81 (277)
.+....|+||++||..++|.. -|.+|+||+.||.|.||.-..|+- ...+..|+..|++++|.|. +-.|+.++.|
T Consensus 46 s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 46 SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 355677999999999999987 799999999999999999887753 3456779999999999985 4578899999
Q ss_pred CcEEEEECCCC---ceeEEeecccCceeEEEEecC---C-----------CEEEEEeCCCcEEEEeCccCCCcceEeecc
Q 023772 82 RQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEY---S-----------SVVVSAGYDQSLRAWDCRSHSTEPIQIIDS 144 (277)
Q Consensus 82 ~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~---~-----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 144 (277)
|.|.+.+.++. ...+....|+-.|+++.+.|. + +.|++|+.|..|++|+..+..-+....+..
T Consensus 126 G~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~ 205 (299)
T KOG1332|consen 126 GKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG 205 (299)
T ss_pred CcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhh
Confidence 99999998754 223345689999999999876 3 579999999999999987654333344677
Q ss_pred ccCcEEEEEecC------CeEEEeecCCcEEEEEccCCc-----ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 145 FQDSVMSVCLTK------TEIIGGSVDGTVRTFDIRVGR-----ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 145 ~~~~~~~~~~~~------~~~~~g~~d~~i~i~d~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
|.+-+..+++.| ..+++++.||++.||..+... .+.......+..++||+.|+.|+.++.|+.+.+|--
T Consensus 206 H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 206 HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 777777766654 348999999999999876331 123345678999999999999999999999999976
Q ss_pred C
Q 023772 214 S 214 (277)
Q Consensus 214 ~ 214 (277)
.
T Consensus 286 ~ 286 (299)
T KOG1332|consen 286 N 286 (299)
T ss_pred C
Confidence 4
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1e-24 Score=179.58 Aligned_cols=249 Identities=20% Similarity=0.262 Sum_probs=177.9
Q ss_pred cCCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC----------
Q 023772 3 VSDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN---------- 72 (277)
Q Consensus 3 ~~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------- 72 (277)
++.+|......++||++.|.++...+.|.+|++||.||+||||-+.+|++++++.- .+.|.+++|+|..
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEec
Confidence 56778888899999999999999999999999999999999999999999887753 3466666666543
Q ss_pred ----------------------------------------------------------------------CEEEEEeCC-
Q 023772 73 ----------------------------------------------------------------------SKLISCGGD- 81 (277)
Q Consensus 73 ----------------------------------------------------------------------~~l~t~s~d- 81 (277)
.||+|...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 333332221
Q ss_pred --CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE--EEEEecCC
Q 023772 82 --RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKT 157 (277)
Q Consensus 82 --~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 157 (277)
..|.|.++........|+...+.|..+.|+|...+++.++. ..|++||+..... +..+.....-+ .++...++
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqel--vKkL~tg~kwiS~msihp~GD 620 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQEL--VKKLLTGSKWISSMSIHPNGD 620 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHH--HHHHhcCCeeeeeeeecCCCC
Confidence 22333333222222222233466888999999888877665 6799999875322 11111112223 44555568
Q ss_pred eEEEeecCCcEEEEEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEE------CCCC---ceEEEEecc
Q 023772 158 EIIGGSVDGTVRTFDIRVGREL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLD------RSTG---ELLQEYKGH 225 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd------~~~~---~~~~~~~~~ 225 (277)
.++.|+.|+.+..||+...... ...+...+++++|++.-..+++|+.||++.+|- +-.+ -+++.+.+|
T Consensus 621 nli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH 700 (733)
T KOG0650|consen 621 NLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH 700 (733)
T ss_pred eEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence 8999999999999999765432 234567899999999999999999999999874 2222 235677788
Q ss_pred ccc--eeeeeeEecCCCceEEeecCCCeEEEE
Q 023772 226 ICK--SFKTDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
... .-.++++|.|...+|++++.||+|++|
T Consensus 701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecccceEeecccCCCceEEecCCCceEEee
Confidence 532 235778899999999999999999998
No 120
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=6.6e-25 Score=175.19 Aligned_cols=202 Identities=22% Similarity=0.347 Sum_probs=167.5
Q ss_pred ceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772 12 NVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTADN-SKLISCGGDR 82 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~ 82 (277)
..|+||++.=.++.|++.. -.|++++.|+++.+||+... .....+.+|...|..++|++-+ ..|.+++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 4789999988889999853 58889999999999997643 2356789999999999999855 5678899999
Q ss_pred cEEEEECC--CCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-
Q 023772 83 QIFYWDVS--TGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE- 158 (277)
Q Consensus 83 ~v~~wd~~--~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 158 (277)
.+.+||++ +.++.....+|..+|++++|+|. +.+|||||.|++|.+||+|+... +...+..|.+.+..+.++|..
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-PLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-CceeccCCCcceEEEEeCCCCC
Confidence 99999999 56777888999999999999996 45789999999999999997643 677788999999999999865
Q ss_pred --EEEeecCCcEEEEEccCCccc--------------c--cCCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECC
Q 023772 159 --IIGGSVDGTVRTFDIRVGREL--------------S--DDLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRS 214 (277)
Q Consensus 159 --~~~g~~d~~i~i~d~~~~~~~--------------~--~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~ 214 (277)
+++++.|+.+.+||+..-... . ..+...|..+.|+|...+. ++.+.|+.++||.+.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 889999999999999642111 1 1223468889999988764 567889999999986
No 121
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=185.10 Aligned_cols=241 Identities=21% Similarity=0.304 Sum_probs=194.1
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA---DNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.-+-.+++++.+|+|++|++|..-|++|||++..-+.....++|...|.|+.++. ..++|+++|.|..|.++|+...
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn 536 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN 536 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence 3456799999999999999999999999999998888888999999999999984 3578999999999999999754
Q ss_pred -ceeEEeecccCceeEEEEecCC--CEEEEEeCCCcEEEEeCccCCCcceEeec----cccCcEEEEEecC--CeEEEee
Q 023772 93 -RVIRKFRGHESEVNAVKFNEYS--SVVVSAGYDQSLRAWDCRSHSTEPIQIID----SFQDSVMSVCLTK--TEIIGGS 163 (277)
Q Consensus 93 -~~~~~~~~h~~~v~~i~~~~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~g~ 163 (277)
.++.++.+|.+.|+++.|-..+ ..+++++.|..|. |+............. ......+.+..++ ..++++.
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 5678899999999999998776 6799999998765 333221111111111 0122344555544 5699999
Q ss_pred cCCcEEEEEccCCcccccC-----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772 164 VDGTVRTFDIRVGRELSDD-----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
.|+.|+|||+..+++.... +....-.+..+|.|.|+++.+.|+++.++|+.+|+++..+.||.. ..+-..|.+
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE--~VTG~kF~n 693 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSE--AVTGVKFLN 693 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcch--heeeeeecc
Confidence 9999999999998765432 233455678899999999999999999999999999999999954 445567899
Q ss_pred CCceEEeecCCCeEEEEECcC
Q 023772 239 SDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~ 259 (277)
|-+.|++.+.||+|.+|.+..
T Consensus 694 DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 694 DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cchhheeecCCceEEEEECch
Confidence 999999999999999999765
No 122
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=174.43 Aligned_cols=240 Identities=19% Similarity=0.300 Sum_probs=182.2
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-------------EEeccCccEEEEEEcCCC-CEEEEEe
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-------------TYKSHGREVRDVHVTADN-SKLISCG 79 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-------------~~~~h~~~v~~~~~~~~~-~~l~t~s 79 (277)
...-..+|++++|++.|..|+..+.....+|+|-. |..+. .-++|...+++.+|+|.+ +.++|++
T Consensus 210 ~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 210 QPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred CcccccccceeeecCCCCeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 34556789999999999999988888899999943 32222 236899999999999976 4789999
Q ss_pred CCCcEEEEECCCCce-eEEe-----ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE-eeccccC--cEE
Q 023772 80 GDRQIFYWDVSTGRV-IRKF-----RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ-IIDSFQD--SVM 150 (277)
Q Consensus 80 ~d~~v~~wd~~~~~~-~~~~-----~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~--~~~ 150 (277)
.||++++||++.-+. ...+ .+.+-+++.++|++++++||+|..||.|.+|+.+.....+.. ....|.. .+.
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~It 368 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDIT 368 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCcee
Confidence 999999999976432 2222 234567899999999999999999999999998654433332 2234444 677
Q ss_pred EEEec--CCeEEEeecCCcEEEEEccCCccccc-C----CCCCeeEEEEeCCCCEEEEEe------cCCeEEEEECCCCc
Q 023772 151 SVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD-D----LGQPVNCISMSNDGNCILASC------LDSTLRLLDRSTGE 217 (277)
Q Consensus 151 ~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~-~----~~~~v~~~~~s~~~~~l~~~~------~d~~i~~wd~~~~~ 217 (277)
++.|+ ++.|++=+.|+++++||++..++... . ...+-+.++|||+.+.|++|. ..|.+++||..+..
T Consensus 369 si~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d 448 (641)
T KOG0772|consen 369 SISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD 448 (641)
T ss_pred EEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee
Confidence 77776 56699999999999999998754321 1 123567789999999999985 46689999999888
Q ss_pred eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772 218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD 256 (277)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd 256 (277)
.++.+.-.. .....|.+.|.=+-++.|+.||.+++|-
T Consensus 449 ~v~ki~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 449 TVYKIDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEecCCC--ceEEEEeecchhhheeeecCCCceEEEE
Confidence 888765443 2345567888877788999999999864
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=2.6e-24 Score=168.31 Aligned_cols=202 Identities=23% Similarity=0.354 Sum_probs=166.3
Q ss_pred eeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCCC----------------CeeEEEEeccCccEEEEEEcC-CCCE
Q 023772 14 LKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPHR----------------GIHIKTYKSHGREVRDVHVTA-DNSK 74 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~-~~~~ 74 (277)
.-.|.+.++.++.++- ..++++=+..|.|.|||+.. .+++.++.+|.+.-..++|+| ....
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 4578899998888764 46777889999999999632 356788999999999999999 3456
Q ss_pred EEEEeCCCcEEEEECCCCce---eEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEE
Q 023772 75 LISCGGDRQIFYWDVSTGRV---IRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM 150 (277)
Q Consensus 75 l~t~s~d~~v~~wd~~~~~~---~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 150 (277)
|+||..-+.|++|...+|.= ...|.+|+..|..++|+|. ..+|++||-||+|+|||+|............|..-|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVN 306 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVN 306 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCcee
Confidence 88998999999999987642 2356789999999999997 5689999999999999999876666666678888888
Q ss_pred EEEecCCe--EEEeecCCcEEEEEccCCcc-----cccCCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCC
Q 023772 151 SVCLTKTE--IIGGSVDGTVRTFDIRVGRE-----LSDDLGQPVNCISMSND-GNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 151 ~~~~~~~~--~~~g~~d~~i~i~d~~~~~~-----~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~ 215 (277)
.++++... |++|+.||+++|||+|+.+. ....+..+|+++.|+|. ...|++++.|.+|.|||+..
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 88888654 89999999999999986532 23457789999999995 46788899999999999853
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.4e-25 Score=189.50 Aligned_cols=234 Identities=17% Similarity=0.280 Sum_probs=182.5
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEcCCC---CeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeE
Q 023772 22 LAARFNG-DGNYCLSCGKDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 22 ~~~~~~~-~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
..+.|+. ..++|+||+..|.|.+||+.. .+.+..|..|...+++++|++-. .+|++||.||+||.||+...+-..
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3456664 467999999999999999987 56677899999999999999854 578999999999999999988888
Q ss_pred EeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEc
Q 023772 97 KFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDI 173 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~ 173 (277)
++.+....|..+.|+|. +..|+++...|.+++||+|.... ....+..|.+++..+.+.|+. +++|+.|+.++|||+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 89998999999999985 67899999999999999997643 444567788999999888765 999999999999999
Q ss_pred cCCcccc---cCCCCCeeEEEEeCCCCEEEE-Ee--cCCeEEEEECCCCc-eEEEEeccccceeeeeeEe-cCCCceEEe
Q 023772 174 RVGRELS---DDLGQPVNCISMSNDGNCILA-SC--LDSTLRLLDRSTGE-LLQEYKGHICKSFKTDCCL-TNSDAHVTG 245 (277)
Q Consensus 174 ~~~~~~~---~~~~~~v~~~~~s~~~~~l~~-~~--~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~l~s 245 (277)
...+... .....++.++.|-|+..+.++ ++ .|-.|++||++..- +..+|.-|... ....++ +.+-..+.+
T Consensus 250 t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~--vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 250 TDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDS--VTGIAWDSGDRINLWS 327 (839)
T ss_pred cCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcc--ccceeccCCCceeeEe
Confidence 7654322 234678999999998776544 43 58899999997543 34566666432 233333 334456778
Q ss_pred ecCCCeEEEEECc
Q 023772 246 GSEDGYIYFWDLV 258 (277)
Q Consensus 246 gs~d~~i~iwd~~ 258 (277)
++.||.|..=.++
T Consensus 328 ~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 328 CSKDGTVLQHLFK 340 (839)
T ss_pred ecCccHHHHhhhh
Confidence 8888887654333
No 125
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=8.9e-25 Score=176.81 Aligned_cols=251 Identities=18% Similarity=0.318 Sum_probs=198.9
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEec--cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKS--HGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
-.|...|.++.++...+.++|||. |-|+|||+... ..+..+.. ....|+++.+.|+++.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 368899999999999999999998 89999997532 22333322 3567999999999999999999999999999
Q ss_pred CCCcee--EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecC
Q 023772 90 STGRVI--RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVD 165 (277)
Q Consensus 90 ~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d 165 (277)
..-.+. ..+....-...+++.+||.++.++|..||.|.+||+.+.. .+..+.+|.+.+.++.++ +..+.+|+.|
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 764432 2233223345678899999999999999999999998654 456678888887777776 6779999999
Q ss_pred CcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 166 GTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 166 ~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
.++|.||++.++++.. .+...|.++..+|++.|++.|-+.+.+.+-.....+ .|..|.+..-+++..|.+.|++++
T Consensus 573 ntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred cceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc---ceeecccccEEEEEEecccCceee
Confidence 9999999999877643 456789999999999999999999988777664322 334444456677788999999999
Q ss_pred eecCCCeEEEEECcCccceeeeccCcc
Q 023772 245 GGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 245 sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
+-+.|+.+..|...=|.-+.+.+.-+.
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~Ss 676 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSS 676 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCc
Confidence 999999999999888877766665443
No 126
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=3.3e-24 Score=177.78 Aligned_cols=248 Identities=19% Similarity=0.266 Sum_probs=178.8
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--EeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSHGREVRDVHVTADNS-KLISCGGDRQIFYWD 88 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd 88 (277)
.....|.++|..+.|.|....|++++-|.++|.||+++.++... +.+|.+.|.+++|.+.+. .|++|+.||.+.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 44568999999999999767889999999999999999888776 899999999999999664 688999999999999
Q ss_pred CCCCc---------------------------eeEEeecccCceeE---EEEecCCCEEEEEeC-CCcEEEEeCccCCCc
Q 023772 89 VSTGR---------------------------VIRKFRGHESEVNA---VKFNEYSSVVVSAGY-DQSLRAWDCRSHSTE 137 (277)
Q Consensus 89 ~~~~~---------------------------~~~~~~~h~~~v~~---i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~ 137 (277)
+.-.. .++....|...|.+ +-+..|...|+++|. |+.|++||++.....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 84221 11223345555555 556677888999888 999999999864321
Q ss_pred ----ceEe--eccc---cCcEEEEEec--CCeEEEeecCCcEEEEEccCCccccc--CCCCCe----eEEEEeCCCCEEE
Q 023772 138 ----PIQI--IDSF---QDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPV----NCISMSNDGNCIL 200 (277)
Q Consensus 138 ----~~~~--~~~~---~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v----~~~~~s~~~~~l~ 200 (277)
+... +..+ .-.+..+..+ +..+.+...|+.|..|+++.-..-.. ..+..+ ..-..+|++.+++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 1111 1111 1123333333 46666666699999999976432111 112222 2235689999999
Q ss_pred EEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772 201 ASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 201 ~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
+|+.|...++|.+.+-+. ...+.||...+..+.++.++... +++++.|..+++|++.++
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCC-ceeeccCcceEEEeccCc
Confidence 999999999999976543 34567887666666666555544 566699999999999775
No 127
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=173.13 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=170.4
Q ss_pred EEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772 53 IKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~ 131 (277)
+..+.+|...|.+++=+|+. ..+++|+.||.|++||+.+-+++.++.+|.+.|.+|.+.. +.+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45668999999999999987 7899999999999999999999999999999999999987 78899999999999974
Q ss_pred ccCC------------------------------------CcceEeeccccCcEEEEEecCCe---EEEeecCCcEEEEE
Q 023772 132 RSHS------------------------------------TEPIQIIDSFQDSVMSVCLTKTE---IIGGSVDGTVRTFD 172 (277)
Q Consensus 132 ~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~d~~i~i~d 172 (277)
.... ..+++.+....+.+.++.+++.+ |++++.|+.|.+||
T Consensus 137 ~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 137 DGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEe
Confidence 3210 01233333445566777777654 77888999999999
Q ss_pred ccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccccceeeeeeEecCCCceEEeecCCC
Q 023772 173 IRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG 250 (277)
Q Consensus 173 ~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 250 (277)
+++...+.. ......+.++|+|++--+.+|++|-.++.||++. ..++..+.+|.. ..++..++|.|.-+++||-|.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvs--AV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVS--AVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccce--eEEEeccCCCcchhccccccc
Confidence 998876644 3456788999999888889999999999999975 466788888854 457778999999999999999
Q ss_pred eEEEEECcCccce
Q 023772 251 YIYFWDLVDASVV 263 (277)
Q Consensus 251 ~i~iwd~~~~~~~ 263 (277)
+||||..+.+.-.
T Consensus 295 sIRIf~~~~~~SR 307 (433)
T KOG0268|consen 295 SIRIFPVNHGHSR 307 (433)
T ss_pred eEEEeecCCCcch
Confidence 9999999887543
No 128
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=4e-26 Score=191.41 Aligned_cols=192 Identities=21% Similarity=0.337 Sum_probs=170.5
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
.|.+|+.+|.++.|+++..+|++|+.||+||+||++.++.++++-+|...+.++.|+|-+.+.++|+.|+.+++||....
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRT 170 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i 170 (277)
.|...+.+|...|..+.|.|+|++++.++.|.++++||+..+. -...+..|...+..+.+.+.. ++.|+.|+++++
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f 222 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRF 222 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc--cccccccccccccccccCchhhhhccCCCCceeee
Confidence 8999999999999999999999999999999999999987543 234456677788888877765 678999999999
Q ss_pred EEccCCcccccC--CCCCeeEEEEeCCCCEEEEEecCC
Q 023772 171 FDIRVGRELSDD--LGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 171 ~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
||+++.+.+... ....|.++.|+|++..+++|..+.
T Consensus 223 ~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 223 WDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 999987666442 245799999999999888876554
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.7e-24 Score=169.98 Aligned_cols=231 Identities=22% Similarity=0.337 Sum_probs=168.0
Q ss_pred CCCEEEEEeCCCcEEEEcCCCC---eeE----------------E--EEeccCccEEEEEEcCCC-CEEEEEeCCCcEEE
Q 023772 29 DGNYCLSCGKDRTIRLWNPHRG---IHI----------------K--TYKSHGREVRDVHVTADN-SKLISCGGDRQIFY 86 (277)
Q Consensus 29 ~~~~l~s~s~d~~v~iwd~~~~---~~~----------------~--~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~ 86 (277)
-|+|+|-|..|..|-|||+.-- .+. + .-.+|...|.++.|+... ..|++||.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3789999999999999996310 000 0 123688889899988754 56889999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec---CCeEEEe
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGG 162 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g 162 (277)
||+.++++..++..|...|.++.|+|. ...+++|+.|+++.+.|+|......... ...+.+-.+.++ +..++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999986 6789999999999999999532221111 122334445554 4558899
Q ss_pred ecCCcEEEEEccCCc-cccc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC
Q 023772 163 SVDGTVRTFDIRVGR-ELSD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~-~~~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
+.||+++-+|+|... .+.. .|..+|.++++++.- .++++++.|+.+++|++.....-.... |. ......+|+.+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~-~~-~~~~rl~c~~~ 426 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKE-HS-FKLGRLHCFAL 426 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCccccc-cc-ccccceeeccc
Confidence 999999999999863 3332 467799999998754 467889999999999986443321111 11 11122344443
Q ss_pred C---CceEEeecCCCeEEEEECcCccce
Q 023772 239 S---DAHVTGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 239 ~---~~~l~sgs~d~~i~iwd~~~~~~~ 263 (277)
+ ...++.|+..+.+++||+.+...+
T Consensus 427 ~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 427 DPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCCcceEEEecCccceEEEeecccChhH
Confidence 2 245777888889999999887665
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.3e-24 Score=175.83 Aligned_cols=234 Identities=17% Similarity=0.299 Sum_probs=188.3
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
.+-|+++...+||+-|++||+-.++.|||+..... ...+......+.+++.+||.+..+++-.||.|.|||+.+..++
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 35588899999999999999999999999876443 2233333457899999999999999999999999999999999
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCCeEEEeecCCcEEEEEc
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKTEIIGGSVDGTVRTFDI 173 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~ 173 (277)
+.|++|+..+.+|.++++|..|-||+.|.+|+.||++....... +.+...|.++. +..+-+++|-.++.+.+-..
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq---hdF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh---hhhhhhheecccCCCccceeeecccCcEEEEec
Confidence 99999999999999999999999999999999999987543211 11223344444 44455999999998888776
Q ss_pred cCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772 174 RVGRELS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252 (277)
Q Consensus 174 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 252 (277)
...+... ..+...|.++.|.+.|+++++.+.|+.+..|..--|..+.... + ....+.|-++.|++++++||-|...
T Consensus 622 skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--E-~SsVlsCDIS~ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 622 SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--E-SSSVLSCDISFDDKYIVTGSGDKKA 698 (705)
T ss_pred CCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--c-cCcceeeeeccCceEEEecCCCcce
Confidence 5544432 3456789999999999999999999999999988776554332 2 2345778899999999999999888
Q ss_pred EEEEC
Q 023772 253 YFWDL 257 (277)
Q Consensus 253 ~iwd~ 257 (277)
-+|.+
T Consensus 699 TVYeV 703 (705)
T KOG0639|consen 699 TVYEV 703 (705)
T ss_pred EEEEE
Confidence 88865
No 131
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=177.32 Aligned_cols=259 Identities=19% Similarity=0.288 Sum_probs=194.3
Q ss_pred eeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 13 VLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.++.-.++|+++.|..||+.+ ++|+..|.+.+||++..+.....+ .|.+.|....|.+....++|++.|+.+++|=.+
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 334335999999999999754 567778999999999887776655 798999999999999999999999998888443
Q ss_pred C--C--ceeEEeecccCc--------------------------------------------------------------
Q 023772 91 T--G--RVIRKFRGHESE-------------------------------------------------------------- 104 (277)
Q Consensus 91 ~--~--~~~~~~~~h~~~-------------------------------------------------------------- 104 (277)
+ | +.++.-.+|..|
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 2 2 122232333333
Q ss_pred ----------------------------------------------------eeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 105 ----------------------------------------------------VNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 105 ----------------------------------------------------v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
+.+++.++.|+..+.|...|+|-+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 4445555555555555555666666555
Q ss_pred cCCCcceE-eeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772 133 SHSTEPIQ-IIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTL 208 (277)
Q Consensus 133 ~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i 208 (277)
++-..... ....|..++..++.+... +++++.+|.+++||+........ ..+.++.++..+.....++++..|-.|
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I 558 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSI 558 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeE
Confidence 43211111 012355677777777644 89999999999999987653322 456788999999888889999999999
Q ss_pred EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772 209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273 (277)
Q Consensus 209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v 273 (277)
+++|..+.+.++.|.||.+ ..++.+|||||+++++++.|++||+||+.++.++.-+--.+..+
T Consensus 559 ~vvD~~t~kvvR~f~gh~n--ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~ 621 (910)
T KOG1539|consen 559 RVVDVVTRKVVREFWGHGN--RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCT 621 (910)
T ss_pred EEEEchhhhhhHHhhcccc--ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcce
Confidence 9999999999999999965 46788999999999999999999999999999998776554433
No 132
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=2.1e-23 Score=166.91 Aligned_cols=258 Identities=19% Similarity=0.222 Sum_probs=195.6
Q ss_pred ccceeeccCCcEEEEEEeCCC--CEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCC
Q 023772 10 EANVLKGHEGAVLAARFNGDG--NYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADN-SKLISCGGDR 82 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~ 82 (277)
+.++.+-|.+.|++++|+|.. +++++|..-|.|-+||..+ ...+..+..|+.+|.++.|+|.+ ..+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 356678899999999999954 5888999999999999843 23456788899999999999955 6899999999
Q ss_pred cEEEEECCCCc--eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---
Q 023772 83 QIFYWDVSTGR--VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--- 157 (277)
Q Consensus 83 ~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (277)
+|++-|++.+. .+.+...-...+.+++|+.....++.+..=|...+||++....+ ...+..|...|..++++|.
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~-~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE-YENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc-chhhhhhhcccceeecCCCCch
Confidence 99999998764 33334334556778888888777777777779999999876432 2223344557888888764
Q ss_pred eEEEeecCCcEEEEEccCCcc-----cc-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC----CCceEEEEecccc
Q 023772 158 EIIGGSVDGTVRTFDIRVGRE-----LS-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS----TGELLQEYKGHIC 227 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~~~~-----~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~----~~~~~~~~~~~~~ 227 (277)
.+++++.|++.+|||+|.-.. +. ..+..+|++..|||.+..|++.+.|..|+|||.. .-.+..++. |.+
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 499999999999999986431 11 2355689999999998889999999999999983 223333332 221
Q ss_pred c----eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 228 K----SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 228 ~----~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
. -...-+.+.|+..+++.|-.-..|-|+|-..++.+.++...
T Consensus 416 ~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 416 RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 1 12233567899999999988888999999999888776543
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.5e-24 Score=180.41 Aligned_cols=254 Identities=17% Similarity=0.282 Sum_probs=183.8
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccC---ccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHG---REVRDVHVTA-DNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~---~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~ 90 (277)
+....+..+++-..++.+|. ..+++|-.... ++...++.-+ ..+..+.|.. ..++|+|++..|.|.+||+.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 34555666788888888877 58888865432 2222222111 2345666764 45789999999999999998
Q ss_pred C---CceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEee
Q 023772 91 T---GRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGS 163 (277)
Q Consensus 91 ~---~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~ 163 (277)
. .+.+..|..|+..++.++|++. ..+|++||.||+|++||++.... ...+......+..+.+.+ +.++++.
T Consensus 119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchhhhceeeccCCCceEEEec
Confidence 6 5667788999999999999976 56899999999999999987543 333334455666676654 5699999
Q ss_pred cCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 164 VDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
..|.++.||+|...... ..+..+|.|+.|+|++.+||+|+.|++|+|||+.+.+.-....-++.. ....+.+-|..
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-pv~rVkWRP~~ 275 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-PVGRVKWRPAR 275 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecc-eeeeeeeccCc
Confidence 99999999999875443 356789999999999999999999999999999765543333322211 22333455654
Q ss_pred c-eEEeec--CCCeEEEEECcCc-cceeeeccCcceeEee
Q 023772 241 A-HVTGGS--EDGYIYFWDLVDA-SVVAKFKAHSLVVKLL 276 (277)
Q Consensus 241 ~-~l~sgs--~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~ 276 (277)
. .||+++ .|-.|++||+... .+...+..|...++.+
T Consensus 276 ~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 276 SYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred cchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 4 466665 4888999999874 5567888888776654
No 134
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-23 Score=169.37 Aligned_cols=253 Identities=16% Similarity=0.175 Sum_probs=188.1
Q ss_pred cEEEEEEeCCCC-EEEEEeCCCcEEEEcCC--CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 20 AVLAARFNGDGN-YCLSCGKDRTIRLWNPH--RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 20 ~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
.+.++.|+.... ..++.+.|..+++|.-. +++....-+.....-.|++......++++|+..++|++||+....+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 388999988764 33356888999999633 222222211112233455555556899999999999999999888889
Q ss_pred EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEE--ecCC-eEEEeecCCcEEEEEc
Q 023772 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVC--LTKT-EIIGGSVDGTVRTFDI 173 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~g~~d~~i~i~d~ 173 (277)
.+++|.+.|+.+.++..+++|++++..|.|.+..+.+.......... ....+.-+. +... .|.+++.+|.+.+||.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~-sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID-SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC-CCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 99999999999999999999999999999999998765433222222 123333333 3333 3678899999999999
Q ss_pred cCCcccc---cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC
Q 023772 174 RVGRELS---DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED 249 (277)
Q Consensus 174 ~~~~~~~---~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 249 (277)
.....+. ..+..|...++|+|.. ..|++-+.|..|.+||.+..+....+.-.. .....+|+++|.+|+.|+..
T Consensus 195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCC
Confidence 7665443 3567788999999965 456778999999999998777666554321 23446799999999999999
Q ss_pred CeEEEEECcC-ccceeeeccCcceeEee
Q 023772 250 GYIYFWDLVD-ASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 250 ~~i~iwd~~~-~~~~~~~~~h~~~v~~~ 276 (277)
|.|..||++. ...++.+.+|+..|+.+
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEE
Confidence 9999999986 46789999999888765
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.3e-22 Score=166.30 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=196.3
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee-EEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
..-..+|.+++|+.+.+.||.+=.||.|-||++..+-. ...+.++ +..|.+++|. ++.+|++.+.+|.|..||+.++
T Consensus 22 d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 22 DYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 34568899999999999999999999999999987533 3445554 4579999999 6779999999999999999999
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRT 170 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i 170 (277)
+....+....+.|++++.+|.+..++.|+.||.+..++...........+......+.++.++++. +++|+.||.|++
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 999999989999999999999999999999998877776544332233334445778888888765 799999999999
Q ss_pred EEccCCcccc-----c-C----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 171 FDIRVGRELS-----D-D----LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 171 ~d~~~~~~~~-----~-~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
||...+.... . . ...-|.++.|-.++ .|++|..-|++++||...+.+++.+..|...+ ...+..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV--l~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADV--LALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcce--eEEEEcCCC
Confidence 9998886543 1 1 12347777777666 48999999999999999999999998886554 444567888
Q ss_pred ceEEeecCCCeEEEEECcCc
Q 023772 241 AHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd~~~~ 260 (277)
.++.+++.|+.|-.|...++
T Consensus 258 d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred CeEEEccCCCceEEEEecCC
Confidence 89999999999998887776
No 136
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=4.3e-22 Score=161.37 Aligned_cols=233 Identities=19% Similarity=0.295 Sum_probs=181.5
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR----- 93 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~----- 93 (277)
.-|+|++|.++|+. +||.++|.|.||+..+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.+
T Consensus 247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCc-cEeecCccceEEecccccccccccc
Confidence 45999999999876 699999999999998888777777999999999998876 55669999999999932110
Q ss_pred ------ee-----------------------------EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc
Q 023772 94 ------VI-----------------------------RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP 138 (277)
Q Consensus 94 ------~~-----------------------------~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~ 138 (277)
.+ ....+|..+.+.++.+|+.+.++|++.|+.+++|+ .+..+.
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w 402 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW 402 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE
Confidence 01 11246888999999999999999999999999999 333333
Q ss_pred eEeeccccCcEEEEEecCC-eEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCC
Q 023772 139 IQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTG 216 (277)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~ 216 (277)
..++ ..++.+..+.+. .++.|+..|...+.|.++...+.. ...++++++.|+|+|.+|+.|+.|+.|+||.+..+
T Consensus 403 t~~~---~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 403 TKII---EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred EEEe---cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 3222 334445555443 588899999999999988554332 22789999999999999999999999999998654
Q ss_pred -ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 217 -ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
.....+.-+.. .+++..-+++|+.++.+-|-|-.|.+|....
T Consensus 480 g~~y~r~~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 480 GRKYSRVGKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred CcEEEEeeeecC-ceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 33333333333 5677778999999999999999999995443
No 137
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=172.84 Aligned_cols=242 Identities=21% Similarity=0.288 Sum_probs=188.7
Q ss_pred eeccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEcCCC-------Ce---------------------eEEEE--------
Q 023772 14 LKGHEGAVLAARFN-GDGNYCLSCGKDRTIRLWNPHR-------GI---------------------HIKTY-------- 56 (277)
Q Consensus 14 l~~H~~~V~~~~~~-~~~~~l~s~s~d~~v~iwd~~~-------~~---------------------~~~~~-------- 56 (277)
-.||..|-.+++|. .+|..|.+++.|+++|.+++.. +. ++..|
T Consensus 330 R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~ 409 (910)
T KOG1539|consen 330 RGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREK 409 (910)
T ss_pred ccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhh
Confidence 35899999999998 6899999999999999987421 00 00000
Q ss_pred -----------------------------eccC------ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe---
Q 023772 57 -----------------------------KSHG------REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF--- 98 (277)
Q Consensus 57 -----------------------------~~h~------~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~--- 98 (277)
-.+. ..+++++.++.|++.+.|+..|.|-+|++.+|-...+|
T Consensus 410 ~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~ 489 (910)
T KOG1539|consen 410 EWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS 489 (910)
T ss_pred hhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC
Confidence 0122 56889999999999999999999999999999998888
Q ss_pred ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc
Q 023772 99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE 178 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~ 178 (277)
..|..+|.+++...-++.+++++.||-++.||...........+ ...............++.+..|=.|+++|..+.+.
T Consensus 490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv 568 (910)
T KOG1539|consen 490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV 568 (910)
T ss_pred ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh
Confidence 58999999999999999999999999999999875432111111 11222223333344466777788899999987665
Q ss_pred ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC-CeEEEE
Q 023772 179 LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-GYIYFW 255 (277)
Q Consensus 179 ~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-~~i~iw 255 (277)
.+. .++..++.++|||||+||++++.|++||+||+.++.++..+.-. ...+...++|+|.+||+...| .-|++|
T Consensus 569 vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 569 VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 443 46789999999999999999999999999999999999877543 345667899999999999988 569999
Q ss_pred ECcC
Q 023772 256 DLVD 259 (277)
Q Consensus 256 d~~~ 259 (277)
--..
T Consensus 646 sNks 649 (910)
T KOG1539|consen 646 SNKS 649 (910)
T ss_pred Echh
Confidence 7544
No 138
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=2.7e-21 Score=157.43 Aligned_cols=233 Identities=14% Similarity=0.123 Sum_probs=167.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV 108 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i 108 (277)
++.++|++.|+.+++||+.+++.+..+..+. .+.++.|+|+++.+ ++++.++.|++||+.+++....+..+.. +..+
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 3578899999999999999998888888664 46789999999876 5677899999999999988777765544 4568
Q ss_pred EEecCCCEEEE-EeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEeecCC-cEEEEEccCCccccc-CC
Q 023772 109 KFNEYSSVVVS-AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGSVDG-TVRTFDIRVGRELSD-DL 183 (277)
Q Consensus 109 ~~~~~~~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~d~-~i~i~d~~~~~~~~~-~~ 183 (277)
.++|+++.++. ++.|+.+++||++.... +..+.. ...+..+.+ ++..++++..++ .+.+||.++++.... ..
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV 155 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc
Confidence 89999987654 45689999999976422 222221 112233444 455577777664 467789877654322 23
Q ss_pred CCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEeccc-----cceeeeeeEecCCCceEEe-ecCCCeEEEEE
Q 023772 184 GQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKGHI-----CKSFKTDCCLTNSDAHVTG-GSEDGYIYFWD 256 (277)
Q Consensus 184 ~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~s-gs~d~~i~iwd 256 (277)
...+.+++|+|++++|+++ ..++.+++||+++++.+..+..+. .......++++|++++++. ...++.+.+||
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d 235 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVD 235 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEE
Confidence 3456789999999988655 469999999999998877665321 1112234668899987544 45567899999
Q ss_pred CcCccceeeec
Q 023772 257 LVDASVVAKFK 267 (277)
Q Consensus 257 ~~~~~~~~~~~ 267 (277)
..+++++..+.
T Consensus 236 ~~~~~~~~~~~ 246 (300)
T TIGR03866 236 AKTYEVLDYLL 246 (300)
T ss_pred CCCCcEEEEEE
Confidence 99988876654
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2e-22 Score=154.47 Aligned_cols=214 Identities=17% Similarity=0.278 Sum_probs=171.1
Q ss_pred eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC--EEEEEeCCCcEEEE
Q 023772 52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS--VVVSAGYDQSLRAW 129 (277)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~~~d~~i~iw 129 (277)
++..+..|.+++++++++ +.++++||.|-+|++||+.....+..+..|.+.|+++.|.+... .|++|+.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 356778999999999996 78999999999999999999888888999999999999988764 89999999999999
Q ss_pred eCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 130 DCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
+.... +....+..|...|+.++..| ...++-+.|+.++.||+-.++.-. .........+.|+|.|.+++.++.+
T Consensus 113 ~~~~W--~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 113 RVGSW--ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred EcCCe--EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-
Confidence 98654 34455666666677666655 446677889999999998876432 2334445569999999998888776
Q ss_pred eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeE
Q 023772 207 TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVK 274 (277)
Q Consensus 207 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~ 274 (277)
.|-+|.+.+.++..+.... ....|+..-++..+++|..|+.|++||.++..+...+.+|...|.
T Consensus 190 ~i~i~q~d~A~v~~~i~~~----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK 253 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVK 253 (362)
T ss_pred EEEEEecccHhHhhhhhcc----ccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhhee
Confidence 4889999887766554322 123333445677899999999999999999999999999988765
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=3.5e-23 Score=159.43 Aligned_cols=243 Identities=17% Similarity=0.264 Sum_probs=183.8
Q ss_pred cCCcEEEEEEeCC----CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 023772 17 HEGAVLAARFNGD----GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 17 H~~~V~~~~~~~~----~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~ 91 (277)
|+..-..++|.-+ ..+++.||.-|.|||.|+.++++.+.+.+|...|+.+.+.|.. ++++++|.|.+|++|++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 6667777888653 3578889999999999999999999999999999999999975 6889999999999999999
Q ss_pred CceeEEee---cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc----ceE----------------------ee
Q 023772 92 GRVIRKFR---GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----PIQ----------------------II 142 (277)
Q Consensus 92 ~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~----------------------~~ 142 (277)
..++..|. +|...|.+++|+.++.++++|+-|.++++|++...+.. ... ..
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99988764 79999999999999999999999999999998732110 000 00
Q ss_pred ccccCcEEEEEecCCeEEEeecCCcEEEEEcc-CCcccc---cC------------CCCCeeEE--EEeCCCCEEEEEec
Q 023772 143 DSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR-VGRELS---DD------------LGQPVNCI--SMSNDGNCILASCL 204 (277)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~-~~~~~~---~~------------~~~~v~~~--~~s~~~~~l~~~~~ 204 (277)
..|...|.++.+-++.+++-+.++.|..|... ..+.+. .. ....+.-+ +|+|-+++|+.|.+
T Consensus 248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 11122222222334557888889999999873 222211 00 01123334 45677899999999
Q ss_pred CCeEEEEECCCCceE--EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 205 DSTLRLLDRSTGELL--QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 205 d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
.|.+++||++...+. .++..+.....+...+|+.|+.+|+...+|+.|.-||..+
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~ 384 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS 384 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence 999999999876553 3444444455667788999999999999999999998643
No 141
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=6.2e-21 Score=154.69 Aligned_cols=254 Identities=19% Similarity=0.334 Sum_probs=186.4
Q ss_pred eccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEE---EEeccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 15 KGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIK---TYKSHG-REVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~---~~~~h~-~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
+.-...|..+.|.|.+ ++++++|. +.+..|+.+.+...+ .|+.+. .-|.|+.|.+++ .++||..+|.|.+|+.
T Consensus 197 k~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 197 KTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSK 274 (626)
T ss_pred eeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeC
Confidence 3445677889999955 67778887 899999998875543 455443 469999999876 5679999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc---------ceEe-e-----------------
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE---------PIQI-I----------------- 142 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---------~~~~-~----------------- 142 (277)
.+.+..++...|...|.++....+|.++- |+.|+.|..||-.-.... ++.. .
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~ 353 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQ 353 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEE
Confidence 88888877779999999999999986665 999999999994211000 0000 0
Q ss_pred -----------ccccCcEEEEE--ecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEE
Q 023772 143 -----------DSFQDSVMSVC--LTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLR 209 (277)
Q Consensus 143 -----------~~~~~~~~~~~--~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 209 (277)
..|.+....+. ++.+.+++++.|+.+++|+ ....++......+..|+.|+|.| .++.|...|...
T Consensus 354 Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 354 GTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred eeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEeeccceEE
Confidence 11122222222 3345689999999999999 44344555678899999999999 899999999999
Q ss_pred EEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccc-eeeeccCc-ceeEee
Q 023772 210 LLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASV-VAKFKAHS-LVVKLL 276 (277)
Q Consensus 210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~-~~v~~~ 276 (277)
+.|.++...++.... ........++|+|.++|.||.|+.|++|.+..... ..+...|+ .+|.+|
T Consensus 432 V~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHL 497 (626)
T ss_pred EEecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEe
Confidence 999998766655443 33455567999999999999999999999877433 33333222 455544
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.90 E-value=8.6e-22 Score=149.96 Aligned_cols=241 Identities=20% Similarity=0.316 Sum_probs=179.7
Q ss_pred eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC---CCEEEEEeCCCcEEEEECC
Q 023772 15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD---NSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~t~s~d~~v~~wd~~ 90 (277)
.+|+-+|.++.|-| |...+.|+|.|.+++|||..+-+....|+- .+.|.+-+++|- ..+|++|..|-+|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 47889999999998 556888999999999999999877777764 467888888873 5678888899999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCC----------cceEe---eccccCcEEEEEec-
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHST----------EPIQI---IDSFQDSVMSVCLT- 155 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~----------~~~~~---~~~~~~~~~~~~~~- 155 (277)
+|..-.++.+|+..|.++.|+|..++ |+||+.||.|++||++.... +.... -..|.+.+..+++.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS 256 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS 256 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence 99999999999999999999998764 78999999999999975311 11111 12344556666665
Q ss_pred -CCeEEEeecCCcEEEEEccCCcccccCCCC----CeeEEEE---eCCCCEEEEEecCCeEEEEECCCCceEEEEecccc
Q 023772 156 -KTEIIGGSVDGTVRTFDIRVGRELSDDLGQ----PVNCISM---SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC 227 (277)
Q Consensus 156 -~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~----~v~~~~~---s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 227 (277)
+.++++.+.|..+++|+..+++......+. .-....+ +.+...++---.|+.+.++++..+..++.+..|..
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k 336 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK 336 (397)
T ss_pred cchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc
Confidence 455888999999999999888643322111 0011111 22233333334568999999999999999999842
Q ss_pred ceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 228 KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 228 ~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
.+..+++.|+-.-..+|..|+.|+.|-..
T Consensus 337 --~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 337 --RINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred --eeeEEeecCchhhhhccccCCcccccccc
Confidence 23444556766678899999999999863
No 143
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=178.06 Aligned_cols=250 Identities=19% Similarity=0.353 Sum_probs=193.2
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~ 92 (277)
-|.||.++|.|+.|...|.++++|+.|.-++||.++++.++....+|.+.|+.++++.++.+++++|.|..|++|-+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc----ce----------Eeec---------------
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE----PI----------QIID--------------- 143 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~----~~----------~~~~--------------- 143 (277)
.++..+.+|++.|++++|+|-. +.+.||++++||.+-.... +. ..+.
T Consensus 265 ~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea 340 (1113)
T KOG0644|consen 265 APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEA 340 (1113)
T ss_pred chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCccc
Confidence 9999999999999999999864 7789999999997611000 00 0000
Q ss_pred -cccCc--------EEEEEec---CCeEEEeecCCcEEEEEccCCccc--ccCCCCCeeEEEEeCCCCEE-EEEecCCeE
Q 023772 144 -SFQDS--------VMSVCLT---KTEIIGGSVDGTVRTFDIRVGREL--SDDLGQPVNCISMSNDGNCI-LASCLDSTL 208 (277)
Q Consensus 144 -~~~~~--------~~~~~~~---~~~~~~g~~d~~i~i~d~~~~~~~--~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i 208 (277)
.+... ...+... ....+++-.+-.+.+|++..++.. ...+.+.+..+.++|....+ .+++.||..
T Consensus 341 ~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst 420 (1113)
T KOG0644|consen 341 RNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST 420 (1113)
T ss_pred ccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence 00000 0000000 011333444556777888877543 34556789999999977654 567899999
Q ss_pred EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
.|||.-.|.+++.|.-. .....++.||++|..++..-.-|.++|.....++..++.+.
T Consensus 421 ~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 421 IIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKY 478 (1113)
T ss_pred EeeecccCCcceeeecc--cceeeccccCCCCceEecCCCCCceEEeccCCCcccccccc
Confidence 99999999888877521 23456788999999988888888999998877766655543
No 144
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.6e-21 Score=156.33 Aligned_cols=241 Identities=16% Similarity=0.312 Sum_probs=181.5
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcC--CCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNP--HRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRV 94 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~ 94 (277)
.++|+++.|+|....|++||.|++++||-+ ++...+..+.-...||.++.|.|+|. .+++++.......||+++.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999964 44455666666678999999999998 889999999999999976542
Q ss_pred e-------------EEe-----------ec--------------------ccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 95 I-------------RKF-----------RG--------------------HESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 95 ~-------------~~~-----------~~--------------------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
. +.| .+ -.+.|.++.|+.+++.|+.++.+|.|.+||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 1 111 01 235688899999999999999999999999
Q ss_pred CccCCCcceEeecc-ccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc------ccc--CCCCCeeEEEEeCCCCEEEE
Q 023772 131 CRSHSTEPIQIIDS-FQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE------LSD--DLGQPVNCISMSNDGNCILA 201 (277)
Q Consensus 131 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~------~~~--~~~~~v~~~~~s~~~~~l~~ 201 (277)
++.........-++ ......+.++++.++++|+..|.+.|||..+... +.. ..-..|++|.|+++++.|+.
T Consensus 373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 98764332222111 1122234446677899999999999999764321 111 12357899999999998877
Q ss_pred Ee--cCCeEEEEECCCCceEEEEeccc-cceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 202 SC--LDSTLRLLDRSTGELLQEYKGHI-CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 202 ~~--~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+| .+..+|+..+.+......|.... .-.......|+|.+.++|.|-++|.+.+|.+.
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 76 46789999988776666555332 22345667899999999999999999999875
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=2.8e-21 Score=148.88 Aligned_cols=252 Identities=21% Similarity=0.326 Sum_probs=179.8
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCC--------e----eEEEEec-cCccEEEEEE-------cCCCCEEEEEeCC
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRG--------I----HIKTYKS-HGREVRDVHV-------TADNSKLISCGGD 81 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--------~----~~~~~~~-h~~~v~~~~~-------~~~~~~l~t~s~d 81 (277)
..+.|+|||.-|++-+.|..+++|++... . ....++- ....|...+| .|+..++++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 35889999999999999999999986421 0 0011111 1234555555 3677899999999
Q ss_pred CcEEEEECCCCceeEEeec--ccCc---eeEEEEecCCCEEEEEeCCCcEEEEeC-ccCCCcceEeec----cccCc-EE
Q 023772 82 RQIFYWDVSTGRVIRKFRG--HESE---VNAVKFNEYSSVVVSAGYDQSLRAWDC-RSHSTEPIQIID----SFQDS-VM 150 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~--h~~~---v~~i~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~~~----~~~~~-~~ 150 (277)
.-|++||.-+|+...++++ |..+ -.+++|+|||+.|++ +..+.|++||+ |.+...+..... ..+.. +.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999999998887764 4333 357999999999986 57789999998 443322222111 11223 33
Q ss_pred EEEecC---CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCC-CceEEEEe
Q 023772 151 SVCLTK---TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCL-DSTLRLLDRST-GELLQEYK 223 (277)
Q Consensus 151 ~~~~~~---~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~-~~~~~~~~ 223 (277)
.+.++| ..++.|+....+-+|.-...+.+.. .++.-|+.+.|.++|+.|++|+. |..|-.||++. +..+..+.
T Consensus 212 c~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 445554 3488999988888876655544433 45668999999999999999864 77899999975 44555565
Q ss_pred cccc-ceeeeeeEecCCCceEEeecCCCeEEEEECcC-ccceeeeccCcceeE
Q 023772 224 GHIC-KSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD-ASVVAKFKAHSLVVK 274 (277)
Q Consensus 224 ~~~~-~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~-~~~~~~~~~h~~~v~ 274 (277)
.|.. ....+-.-+.|++.+|++|+.||.|++||+++ |+.+..+..|+..+.
T Consensus 292 rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 292 RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred hhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccc
Confidence 5543 33444455678999999999999999999999 776777777765543
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=1.3e-21 Score=154.21 Aligned_cols=205 Identities=19% Similarity=0.257 Sum_probs=152.1
Q ss_pred ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcCC-CCEEEEEeCCC
Q 023772 12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTAD-NSKLISCGGDR 82 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~ 82 (277)
....||+++|+.++|.| +...|||||+|.+|.||.+..+ +.+..+.+|...|.-+.|+|. .+.|+++|.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34579999999999999 6678999999999999986532 456788999999999999985 46789999999
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (277)
+|++|++.+|+.+-++. |...|.++.|+.+|.+++|++.|..|++||.+.+........+....+...+-+....+++.
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tT 233 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTT 233 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeee
Confidence 99999999999888887 99999999999999999999999999999998765432221111111222222222225544
Q ss_pred e----cCCcEEEEEccCCccccc----CCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCCc
Q 023772 163 S----VDGTVRTFDIRVGRELSD----DLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTGE 217 (277)
Q Consensus 163 ~----~d~~i~i~d~~~~~~~~~----~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~~ 217 (277)
+ .++.+-+||...-++... ..+.-|.---++++.+.+ ++|-.|+.||.|.+....
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 3 367788999765433211 122234334467776655 566789999999987654
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3.9e-22 Score=159.09 Aligned_cols=203 Identities=21% Similarity=0.306 Sum_probs=161.8
Q ss_pred eccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 023772 15 KGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG 92 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~ 92 (277)
.+|+++|.++.|+.. .+.|+|||.|.+|++||+.+|++..++..|.+.|.++.|+|.. ..|++|+.|++|++.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 479999999999985 4688899999999999999999999999999999999999854 68899999999999999842
Q ss_pred -ceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec---CCeEEEeecCCc
Q 023772 93 -RVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT---KTEIIGGSVDGT 167 (277)
Q Consensus 93 -~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~d~~ 167 (277)
..-..++ -.+.|-.++|++... .++.+..||+++-+|+|+.. +++.....|.++|..++++ +..+++++.|+.
T Consensus 320 ~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 320 SNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred cccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 2222222 356888899998754 57777899999999999864 6778888899999888876 456899999999
Q ss_pred EEEEEccCCcccccC----CCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCceE
Q 023772 168 VRTFDIRVGRELSDD----LGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 168 i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
+++|++.....-... .-....|.++.|+-. .|+.|+..+.+++||..++..+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999998644321111 112466777788654 4677888888999999876554
No 148
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.3e-20 Score=156.43 Aligned_cols=260 Identities=19% Similarity=0.308 Sum_probs=185.3
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEE-----EeccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKT-----YKSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~-----~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
.+.||++-|.++.|.|++..|+|+|.|.++.+|...+. .-... ..+..+.-....|+|+++.|++-+..|-.+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 45699999999999999999999999999999976543 33222 222334578899999999999999999999
Q ss_pred EEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC----------------------cceE
Q 023772 86 YWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST----------------------EPIQ 140 (277)
Q Consensus 86 ~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------------~~~~ 140 (277)
+|-.+.. .......+|...|.+++|.|.|+++++.|.|.+-++|-.-..+. +..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9984332 23344679999999999999999999999999999985320000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 023772 141 -------------------------------------------------------------------------------- 140 (277)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (277)
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence
Q ss_pred ------------------eeccccCcEEEEEecCC--eEEEeecC-----CcEEEEEccCCccccc--CCCCCeeEEEEe
Q 023772 141 ------------------IIDSFQDSVMSVCLTKT--EIIGGSVD-----GTVRTFDIRVGRELSD--DLGQPVNCISMS 193 (277)
Q Consensus 141 ------------------~~~~~~~~~~~~~~~~~--~~~~g~~d-----~~i~i~d~~~~~~~~~--~~~~~v~~~~~s 193 (277)
.+.+|.-.+++++.+++ .++++... --|++|+..+-.+... .++-.|+.++||
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 00012223455555433 34443222 2478888765544432 345579999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCce-EEE---EeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc--cceeee-
Q 023772 194 NDGNCILASCLDSTLRLLDRSTGEL-LQE---YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA--SVVAKF- 266 (277)
Q Consensus 194 ~~~~~l~~~~~d~~i~~wd~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~--~~~~~~- 266 (277)
|||++|++.|.|+++.+|....... ... .+.| ...+.+|.++|++.+++|+|.|..|++|...+. ..+.++
T Consensus 582 pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~H--tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 582 PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAH--TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred CCCcEEEEeecCceEEeeeeecccchhhhhcccccc--ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 9999999999999999999854321 111 2334 567888999999999999999999999999888 444442
Q ss_pred -ccCcceeE
Q 023772 267 -KAHSLVVK 274 (277)
Q Consensus 267 -~~h~~~v~ 274 (277)
-.++.+|+
T Consensus 660 ~~~~~~aVT 668 (764)
T KOG1063|consen 660 CLKFSLAVT 668 (764)
T ss_pred hhccCCcee
Confidence 24555554
No 149
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.9e-21 Score=156.96 Aligned_cols=265 Identities=22% Similarity=0.334 Sum_probs=204.1
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcCC--CCEEEEEeCCCcEEEEE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTAD--NSKLISCGGDRQIFYWD 88 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~l~t~s~d~~v~~wd 88 (277)
..|..|.|-|+.+.|+..|..|+|+|.|..+.+||...+.....| .+|...|....|.|. ...|++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 457899999999999999999999999999999999988776665 468889999999884 46799999999999887
Q ss_pred CC-CCce--eEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCc----EEEEEec---CC
Q 023772 89 VS-TGRV--IRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDS----VMSVCLT---KT 157 (277)
Q Consensus 89 ~~-~~~~--~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~---~~ 157 (277)
+. ++.+ ...+..|.++|.-++..|+. ..|.+++.|+.++-+|++...+...........+ ...+..+ ..
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 64 3333 23466799999999998875 4699999999999999987655443333222222 2333333 34
Q ss_pred eEEEeecCCcEEEEEccCCccc------c--------cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC--C-----
Q 023772 158 EIIGGSVDGTVRTFDIRVGREL------S--------DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST--G----- 216 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~~~~~------~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~--~----- 216 (277)
++++|+.|...++||.+.-..- . ......|+++.|+.++.-|+++-.|-.|++|+-.. |
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 6999999999999998753211 0 01123689999998888888888999999996432 2
Q ss_pred -----ceEEE-Eeccccceeeeee-EecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 217 -----ELLQE-YKGHICKSFKTDC-CLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 217 -----~~~~~-~~~~~~~~~~~~~-~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
..++. |+||.+...+.-+ .|.|...|+++||.=|.|.||+-.+++++.-+++...+|.||
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCL 442 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCL 442 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEecc
Confidence 23333 8898655443333 467889999999999999999999999999999877788876
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=4e-21 Score=150.65 Aligned_cols=196 Identities=21% Similarity=0.418 Sum_probs=155.3
Q ss_pred ccceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeE---EEEeccCccEEEEEEcCC-CCEEEEEeCCCcE
Q 023772 10 EANVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHI---KTYKSHGREVRDVHVTAD-NSKLISCGGDRQI 84 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v 84 (277)
+...+.+|.+.=..++|||- ...|+||.--+.|++|...+|... .-|.+|...|..+.|+|. ...|++||.|++|
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsI 282 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSI 282 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceE
Confidence 35567899999999999993 235788888899999998887543 346679999999999995 4688999999999
Q ss_pred EEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-cceEeeccccCcEEEEEecCCe--
Q 023772 85 FYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-EPIQIIDSFQDSVMSVCLTKTE-- 158 (277)
Q Consensus 85 ~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-- 158 (277)
+|||+..+ .++. .+.|.+.|+.|.|+..-.+|++|+.||+++|||+|+... .++..+..|..+|+++.+.|..
T Consensus 283 rIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 283 RIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence 99999987 3443 488999999999999888999999999999999997654 3677788899999999999754
Q ss_pred -EEEeecCCcEEEEEccCCcc--------------c-----ccC-CCCCeeEEEEeCCC-CEEEEEecCC
Q 023772 159 -IIGGSVDGTVRTFDIRVGRE--------------L-----SDD-LGQPVNCISMSNDG-NCILASCLDS 206 (277)
Q Consensus 159 -~~~g~~d~~i~i~d~~~~~~--------------~-----~~~-~~~~v~~~~~s~~~-~~l~~~~~d~ 206 (277)
+++++.|..|.+||+..... + ... -+..+..+.|+++- .++++.+.||
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 88999999999999853321 0 000 12246667787753 3677777777
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=143.20 Aligned_cols=202 Identities=20% Similarity=0.362 Sum_probs=155.6
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS- 90 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~- 90 (277)
..-+.|+-+|-.+....++.+|+||+.|.+|.+|++. |+.+..+......-+.++++|+|++|++++..--|++|.+-
T Consensus 181 ~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f 259 (420)
T KOG2096|consen 181 EFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIF 259 (420)
T ss_pred ccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence 3445688888889999999999999999999999998 88888888877888899999999999999999999999873
Q ss_pred --CC-----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-----CCcceEe----eccccCcEEEEEe
Q 023772 91 --TG-----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-----STEPIQI----IDSFQDSVMSVCL 154 (277)
Q Consensus 91 --~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~----~~~~~~~~~~~~~ 154 (277)
.| ..+.++++|.+.|...+|+++.+.++|.|.||++++||..-. .+..... +.........+.+
T Consensus 260 ~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 260 TKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred ccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEe
Confidence 22 245678999999999999999999999999999999997521 1110100 0111122234555
Q ss_pred cCCe-EEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 155 TKTE-IIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 155 ~~~~-~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
+|.. ++..+...+|++|..+.++... ..++..|.+++|+++|++++++ .|+.++++.-..
T Consensus 340 sP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atc-Gdr~vrv~~ntp 403 (420)
T KOG2096|consen 340 SPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATC-GDRYVRVIRNTP 403 (420)
T ss_pred CCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeee-cceeeeeecCCC
Confidence 5543 3444556689999988876543 3567899999999999988775 578888876433
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=150.97 Aligned_cols=243 Identities=16% Similarity=0.271 Sum_probs=185.3
Q ss_pred ceeeccC-CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 12 NVLKGHE-GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 12 ~~l~~H~-~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.++.||+ +.|.+++|. ++..|+|.+-+|+|.-||+.+++++..+..-.++|++++.+|.+..++.|..||.++.++..
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 3455655 579999999 45577899999999999999999999999889999999999999999999999999999988
Q ss_pred CCceeE--EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-----cc-ccCcEEEEEe-cCCeEEE
Q 023772 91 TGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-----DS-FQDSVMSVCL-TKTEIIG 161 (277)
Q Consensus 91 ~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~-~~~~~~~~~~-~~~~~~~ 161 (277)
.++... .+...+++|.+++|++++..+++|+.||.|++||...++...+... .. ...-+.++.+ ....+++
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 877643 3555678999999999999999999999999999987654331111 11 1122334433 4566899
Q ss_pred eecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce--EE--EEeccccceeeeeeE
Q 023772 162 GSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL--LQ--EYKGHICKSFKTDCC 235 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~--~~--~~~~~~~~~~~~~~~ 235 (277)
|..-|++.+||...+..+.. .+...|.|++..++++++++++.|+.|..|...+++. +. ....|.... ...+
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdv--rs~a 298 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDV--RSMA 298 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccc--eeee
Confidence 99999999999987765533 4567899999999999999999999998888766533 11 122343322 2233
Q ss_pred ecCCCceEEeecCCCeEEEEECcC
Q 023772 236 LTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 236 ~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
..++ .+++|+.|..+.+=-...
T Consensus 299 v~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 299 VIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred eecc--eEEecceeeEEEEccccc
Confidence 3333 788899999888766554
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=7.9e-22 Score=173.39 Aligned_cols=244 Identities=14% Similarity=0.210 Sum_probs=176.9
Q ss_pred EEEEeCCCC-EEEEE----------eCCCcEEEEcCCC--Ce----eEEEEeccCccEEEEEEcCCCCE----EEEEeCC
Q 023772 23 AARFNGDGN-YCLSC----------GKDRTIRLWNPHR--GI----HIKTYKSHGREVRDVHVTADNSK----LISCGGD 81 (277)
Q Consensus 23 ~~~~~~~~~-~l~s~----------s~d~~v~iwd~~~--~~----~~~~~~~h~~~v~~~~~~~~~~~----l~t~s~d 81 (277)
..+|+|.+. ++++| |.+.++-||.+.. .. .+..+. -...-+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 366777664 33332 4456666664432 11 222222 2345678999887665 8888999
Q ss_pred CcEEEEECCC------CceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772 82 RQIFYWDVST------GRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154 (277)
Q Consensus 82 ~~v~~wd~~~------~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
|.|-+||... ...+.++..|+++|..++|++.+. ++++|+.||.|.|||+......-........+.|..+.+
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999864 245778889999999999999865 999999999999999986432111112234567888888
Q ss_pred cCCe---EEEeecCCcEEEEEccCCcccccCC----CCCeeEEEEeCCC-CEEEEEecCC---eEEEEECCC-CceEEEE
Q 023772 155 TKTE---IIGGSVDGTVRTFDIRVGRELSDDL----GQPVNCISMSNDG-NCILASCLDS---TLRLLDRST-GELLQEY 222 (277)
Q Consensus 155 ~~~~---~~~g~~d~~i~i~d~~~~~~~~~~~----~~~v~~~~~s~~~-~~l~~~~~d~---~i~~wd~~~-~~~~~~~ 222 (277)
+... |++++.+|++.|||+|..+.+.... ...+..++|+|+. ..+++++.|. .|.+||++. ...++.+
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 7543 8899999999999999887654321 1357889999986 4566666655 689999875 4677888
Q ss_pred eccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 223 KGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
.+|.......++|. .|..++++++.|+.|..||.++++++.++..
T Consensus 250 ~~H~~GilslsWc~-~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCP-QDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred cccccceeeeccCC-CCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 88876555555442 3458899999999999999999999999876
No 154
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=8.2e-20 Score=140.40 Aligned_cols=245 Identities=17% Similarity=0.228 Sum_probs=170.9
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYW 87 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~w 87 (277)
....+|.+|-.||.+++||++|+.|+|+|.|..+++||+..|.+++.++- ..+|+.+.|+|... +.+..-.+..-.+-
T Consensus 56 ~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi 134 (405)
T KOG1273|consen 56 RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVI 134 (405)
T ss_pred chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEE
Confidence 34678899999999999999999999999999999999999999888874 57999999998554 44444445445555
Q ss_pred ECCCCceeEEeeccc-----Cce-eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE--EecCCeE
Q 023772 88 DVSTGRVIRKFRGHE-----SEV-NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV--CLTKTEI 159 (277)
Q Consensus 88 d~~~~~~~~~~~~h~-----~~v-~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 159 (277)
++... ..++.... +.+ ....|.+.|+++++|...|.+-++|..+........... ...+..+ +..+..+
T Consensus 135 ~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 135 DFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFL 211 (405)
T ss_pred EecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEE
Confidence 55432 22221110 111 112477889999999999999999987654332222111 1223333 3446668
Q ss_pred EEeecCCcEEEEEccCC------ccccc-------CCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCCCceEEEEecc
Q 023772 160 IGGSVDGTVRTFDIRVG------RELSD-------DLGQPVNCISMSNDGNCILASCL-DSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~------~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~ 225 (277)
+.-+.|+.||.|+++.- .++.. ....+.++++||.+|.|+.+++. -..++||....|.+++.+.|.
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 89999999999998621 11110 01246788999999999888764 447999999999999998876
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
... .-.+..+.|--..+++- ..|.+++|....
T Consensus 292 kgE-~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 292 KGE-ELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred chh-heeecccccceeeeeec-cCCceEEEEeec
Confidence 432 23444555554555655 678999998654
No 155
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=4.8e-20 Score=158.90 Aligned_cols=197 Identities=15% Similarity=0.208 Sum_probs=157.0
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
|...|.+++ ..+.++++|+.+++|.+|....++.-..+..-.-+++.++|+.+|++++.||.|-.||+-++.++....
T Consensus 55 ~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~ 132 (933)
T KOG1274|consen 55 SGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEK 132 (933)
T ss_pred cCceeEEEe--ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhe
Confidence 666776665 445699999999999999877665433343345799999999999999999999999999999999999
Q ss_pred EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-e----ccc-cCcEEEEEecCC--eEEEeecCCcE
Q 023772 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-I----DSF-QDSVMSVCLTKT--EIIGGSVDGTV 168 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~----~~~-~~~~~~~~~~~~--~~~~g~~d~~i 168 (277)
.+++|..+|.++.|+|++++|++.+-||+|++||+..+....... + ... ...+....|.|+ .++....|++|
T Consensus 133 ~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~V 212 (933)
T KOG1274|consen 133 VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTV 212 (933)
T ss_pred eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeE
Confidence 999999999999999999999999999999999997653221100 0 001 223455566665 48889999999
Q ss_pred EEEEccCCcccc---cCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 169 RTFDIRVGRELS---DDL-GQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 169 ~i~d~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
++|+....+... ... ...+.++.|+|.|+|||+++.||.|-+||.++
T Consensus 213 kvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 999987655432 222 33488999999999999999999999999987
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-21 Score=172.60 Aligned_cols=238 Identities=18% Similarity=0.245 Sum_probs=181.9
Q ss_pred cEEEEEEeCCCCE----EEEEeCCCcEEEEcCCC------CeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 023772 20 AVLAARFNGDGNY----CLSCGKDRTIRLWNPHR------GIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWD 88 (277)
Q Consensus 20 ~V~~~~~~~~~~~----l~s~s~d~~v~iwd~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd 88 (277)
.-..++|.+.|.. |+.|.+||.|-+||... ...+.++..|.++|..++|++... .+++|+.||.|.+||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 4567999887665 89999999999999754 234667888999999999999665 899999999999999
Q ss_pred CCCCceeEEee--cccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccC--cEEEEEecCC---eEE
Q 023772 89 VSTGRVIRKFR--GHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD--SVMSVCLTKT---EII 160 (277)
Q Consensus 89 ~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~ 160 (277)
+..-+.-.++. .-.+.|.+++|+.. ...|++++.+|.+.+||++.. +++..+..+.. .+..+.|+++ .++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC--CcccccccCCCccceeeeeeCCCCceeee
Confidence 98755444442 24678999999976 567889999999999999865 23333332222 2445666654 477
Q ss_pred EeecCC---cEEEEEccCCc---ccccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEEEeccccceeeee
Q 023772 161 GGSVDG---TVRTFDIRVGR---ELSDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD 233 (277)
Q Consensus 161 ~g~~d~---~i~i~d~~~~~---~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 233 (277)
+++.|. .|.+||+|... .+...|..-|.++.|++.+ .++++++.|+.|.+||..+++.+..+....+ ...+
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fd 301 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFD 301 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceee
Confidence 777665 48899998543 2334566789999999977 7889999999999999999999998876433 3445
Q ss_pred eEecCCCc-eEEeecCCCeEEEEECcCcc
Q 023772 234 CCLTNSDA-HVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 234 ~~~~~~~~-~l~sgs~d~~i~iwd~~~~~ 261 (277)
..|.|.+. .++.++-||.|.||.+....
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeecCCCcchhhhheeccceeeeeeecCC
Confidence 55666655 67788999999999987754
No 157
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.4e-20 Score=146.49 Aligned_cols=245 Identities=16% Similarity=0.161 Sum_probs=181.0
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC------CeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR------GIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
-+.+|.+-|+++.|+.++++|++||.|..+++|++.. .+++.... .|...|.+++|...+.++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 3579999999999999999999999999999999643 23444333 3557899999999999999999999999
Q ss_pred EEECCCCceeEEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecC---CeE
Q 023772 86 YWDVSTGRVIRKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTK---TEI 159 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~ 159 (277)
..|+++.+.+..+.. ..+.|..+..+|..+.+++.+.++.|.+||.+..... ........+.....+.+.| ..+
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999998876652 2348999999999999999999999999999864321 2222333344445555554 457
Q ss_pred EEeecCCcEEEEEccCCccccc------CC---CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccc---
Q 023772 160 IGGSVDGTVRTFDIRVGRELSD------DL---GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHI--- 226 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~------~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~--- 226 (277)
++.+..+-+.+||.+..+.... .. ........|+|.|+.|++--....=.+||+-+..+ +..+. |.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~G 289 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNG 289 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CCCCc
Confidence 8888888899999987653211 11 12346788999999988765555556788866433 33332 21
Q ss_pred --cceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 227 --CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 227 --~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+.....+|||-.+ .-+++||.+=.|++|.+..
T Consensus 290 Y~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred ceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 2233445666544 4599999999999999765
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=2.1e-18 Score=145.90 Aligned_cols=256 Identities=29% Similarity=0.540 Sum_probs=197.6
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-eEEEEeccCc-cEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-HIKTYKSHGR-EVRDVHV-TADNS-KLISCGG-DRQIFYW 87 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~h~~-~v~~~~~-~~~~~-~l~t~s~-d~~v~~w 87 (277)
.+..|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+..+.. .+..+.+ .+++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999988876 6677776443 7777777 77777 5555455 9999999
Q ss_pred ECCC-CceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EE-Ee
Q 023772 88 DVST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--II-GG 162 (277)
Q Consensus 88 d~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~g 162 (277)
|... ......+..|...|..+.+.|++..+++++. |+.+++|+... ......+..+...+..+.+.+.. ++ ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC--CceEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 9998 7888889999999999999999998888886 99999999875 23444555567777777776543 44 44
Q ss_pred ecCCcEEEEEccCCcccc-cC--CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecC
Q 023772 163 SVDGTVRTFDIRVGRELS-DD--LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~~~~-~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (277)
+.|+.+++||...+..+. .. +.... ...|+|++.++++++.|+.+++|+...... ...+.+|. .......+.|
T Consensus 218 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~ 294 (466)
T COG2319 218 SSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS--SSVLSVAFSP 294 (466)
T ss_pred cCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCC--ccEEEEEECC
Confidence 899999999988665544 22 22232 238999998889999999999999986654 44444452 2334446788
Q ss_pred CCceEEeecCCCeEEEEECcCccceeeec--cCccee
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFK--AHSLVV 273 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~--~h~~~v 273 (277)
++..+++++.|+.+++||..+........ .|...+
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce
Confidence 77788878889999999999888777766 676533
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.1e-21 Score=154.53 Aligned_cols=212 Identities=14% Similarity=0.250 Sum_probs=169.7
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h 101 (277)
.|+.......|+++||..+.|+|||++...+.+.++.|...|+++.+.....+|++++..|.|.+..+.++..-.+|..-
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 34444455589999999999999999988888889999999999999999999999999999999999998887777644
Q ss_pred -cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcEEEEEccCC
Q 023772 102 -ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVG 176 (277)
Q Consensus 102 -~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~ 176 (277)
...|.-+.|++..+ +|.+++.+|.|.+||.....+ .......|..++..+++++. .+++.+.|+.|.+||.+..
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp-~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP-IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc-ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 34566889998765 577889999999999876433 22233456667777777654 3888999999999999876
Q ss_pred ccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccccceeeeee
Q 023772 177 RELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHICKSFKTDC 234 (277)
Q Consensus 177 ~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~ 234 (277)
+.... ...+|...++|+++|.+|++|...|.|..||++. ..++.....|...+..+.+
T Consensus 242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 54433 3567999999999999999999999999999976 4567777777655443333
No 160
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=151.35 Aligned_cols=247 Identities=17% Similarity=0.247 Sum_probs=183.5
Q ss_pred ceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 12 NVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
..+..|.++|.++.|+| +...+++.|.||++|.=|.+.+..- .....-.....++.|+.+...++.+..=|...+||
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 44678999999999999 4578899999999999998875432 22222344567888888888888888878999999
Q ss_pred CCCCce-eEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcc--eEeeccccCcEEEEEecCCe--EEEe
Q 023772 89 VSTGRV-IRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEP--IQIIDSFQDSVMSVCLTKTE--IIGG 162 (277)
Q Consensus 89 ~~~~~~-~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~g 162 (277)
+.++.. ...+.-|...|++++++|.. .+++|+|.|++.+|||++.-..++ +.....|...|.+..++|.. +++.
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence 987653 55667788899999999974 579999999999999998755444 23344567778877777643 9999
Q ss_pred ecCCcEEEEEcc---CC-c---ccccC--CCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee
Q 023772 163 SVDGTVRTFDIR---VG-R---ELSDD--LGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK 231 (277)
Q Consensus 163 ~~d~~i~i~d~~---~~-~---~~~~~--~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 231 (277)
+.|..|++||-. .. . .+... ++. ......|.|+.+++++|-.-+.|-++|-..++.+..+.+.......
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 999999999974 11 1 11111 111 2334689999999999999999999999988877766554332223
Q ss_pred eeeEecCCCc-eEEeecCCCeEEEEECc
Q 023772 232 TDCCLTNSDA-HVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 232 ~~~~~~~~~~-~l~sgs~d~~i~iwd~~ 258 (277)
....+.|-+. +++.|...|.|++|--+
T Consensus 468 ~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 468 SVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeecccccceeccCCccceEEEEecC
Confidence 3335677555 67777889999998654
No 161
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.8e-19 Score=135.71 Aligned_cols=200 Identities=18% Similarity=0.330 Sum_probs=147.3
Q ss_pred eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEeecccCceeEEEEe--cCCCEEEEEeCCCcEEEEe
Q 023772 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST----GRVIRKFRGHESEVNAVKFN--EYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 57 ~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----~~~~~~~~~h~~~v~~i~~~--~~~~~l~s~~~d~~i~iwd 130 (277)
.+|..-|+++.|.+-|++++|||.|++++|||.+. ..+-..++.|.+.|..+.|. +.|+.+++|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 35788899999999999999999999999999643 35677889999999999995 3599999999999999997
Q ss_pred CccCCC-------cceEeeccccCcEEEEEecCCe----EEEeecCCcEEEEEccCCccc---------c------cCCC
Q 023772 131 CRSHST-------EPIQIIDSFQDSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGREL---------S------DDLG 184 (277)
Q Consensus 131 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----~~~g~~d~~i~i~d~~~~~~~---------~------~~~~ 184 (277)
-..... ....++......++.+.|.|.+ +++++.||++|||+......+ . ....
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 532111 1223344455678888888754 889999999999987533211 1 1233
Q ss_pred CCeeEEEEeCC---CCEEEEEecC-----CeEEEEECCCC----ceEEEEeccccceeeeeeEecCC----CceEEeecC
Q 023772 185 QPVNCISMSND---GNCILASCLD-----STLRLLDRSTG----ELLQEYKGHICKSFKTDCCLTNS----DAHVTGGSE 248 (277)
Q Consensus 185 ~~v~~~~~s~~---~~~l~~~~~d-----~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~l~sgs~ 248 (277)
.+-.|+.|+|. ..+|+.|+.+ +.++||....+ ..+.++.+|... +.+.++.|. ...||+++.
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeeeccccCCceeeEEEeec
Confidence 56788889874 3567777765 37888887543 234566677654 455566664 346999999
Q ss_pred CCeEEEEECcC
Q 023772 249 DGYIYFWDLVD 259 (277)
Q Consensus 249 d~~i~iwd~~~ 259 (277)
|| |+||++..
T Consensus 248 Dg-v~I~~v~~ 257 (361)
T KOG2445|consen 248 DG-VRIFKVKV 257 (361)
T ss_pred Cc-EEEEEEee
Confidence 99 99999884
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.85 E-value=1.4e-20 Score=145.21 Aligned_cols=203 Identities=23% Similarity=0.422 Sum_probs=151.4
Q ss_pred ccceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCCCeeEEEE---eccCccEEEEEEcCCCCEEEEEeCCCcEE
Q 023772 10 EANVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHRGIHIKTY---KSHGREVRDVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~t~s~d~~v~ 85 (277)
....+.||.++|+.+.|.|+. +++++||+|.+||+||+++..++..| ++|...|.+++|++++.+|+++|.|.+++
T Consensus 127 ~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk 206 (385)
T KOG1034|consen 127 CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLK 206 (385)
T ss_pred hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEE
Confidence 345678999999999999965 68889999999999999999998876 56999999999999999999999999999
Q ss_pred EEECCCCce------eE----------------------EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc-CCC
Q 023772 86 YWDVSTGRV------IR----------------------KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS-HST 136 (277)
Q Consensus 86 ~wd~~~~~~------~~----------------------~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~-~~~ 136 (277)
+|++...+. .. +-.-|+..|-++.|- ++++++=|-++.|..|.+.. .+.
T Consensus 207 ~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~ 284 (385)
T KOG1034|consen 207 LWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEES 284 (385)
T ss_pred EEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhh
Confidence 999973321 10 112255555555554 57899999999999998721 100
Q ss_pred -------c-ceEee---ccccCcEEEEEe--c--CCeEEEeecCCcEEEEEccCCcccc------cCCCCCeeEEEEeCC
Q 023772 137 -------E-PIQII---DSFQDSVMSVCL--T--KTEIIGGSVDGTVRTFDIRVGRELS------DDLGQPVNCISMSND 195 (277)
Q Consensus 137 -------~-~~~~~---~~~~~~~~~~~~--~--~~~~~~g~~d~~i~i~d~~~~~~~~------~~~~~~v~~~~~s~~ 195 (277)
+ ...++ .-....+..+.+ + ...++.|...|.+.+||++...... ...+..|+..+|+.+
T Consensus 285 ~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 285 IHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred hhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence 0 11111 111223333333 3 3448899999999999998765421 123457899999999
Q ss_pred CCEEEEEecCCeEEEEECC
Q 023772 196 GNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 196 ~~~l~~~~~d~~i~~wd~~ 214 (277)
|..|+..+.|++|.-||..
T Consensus 365 gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 365 GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CcEEEEEeCCCcEEEEEee
Confidence 9999999999999999864
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=5.6e-19 Score=148.06 Aligned_cols=236 Identities=17% Similarity=0.281 Sum_probs=179.2
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV----- 94 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~----- 94 (277)
.|..++|.|||..|+-+. +..+.+||+..|..+.++++|...|.+++|+.+|+++++|+.|+.|-+|...-...
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 789999999999887754 45899999999999999999999999999999999999999999999998642211
Q ss_pred ---eEE--ee-------------------------cc--cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772 95 ---IRK--FR-------------------------GH--ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII 142 (277)
Q Consensus 95 ---~~~--~~-------------------------~h--~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 142 (277)
++. |. .| ..++.+++|..||++++-|-.||+|.+-+-.......++..
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCC
Confidence 111 10 12 35678888899999999999999999886443222233333
Q ss_pred ccccCcEEEEEecCC-------eEEEeecCCcEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 143 DSFQDSVMSVCLTKT-------EIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 143 ~~~~~~~~~~~~~~~-------~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
.+...++.++.+++. -+++.....++.+|.+.. +.+. ...+-...|+.+-++|.+++.|+.|+.+++|-.
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 446677888888653 267778888888888753 2222 223446788999999999999999999999987
Q ss_pred CCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCc
Q 023772 214 STGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
. |-.+.+.... ..++......|++.+++.|+.||+|--|++.-.
T Consensus 252 ~-GvrLGTvg~~--D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 252 D-GVRLGTVGEQ--DSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred c-CeEEeecccc--ceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 5 4444444332 234555667899999999999999999997543
No 164
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=4.4e-20 Score=138.62 Aligned_cols=248 Identities=14% Similarity=0.196 Sum_probs=179.9
Q ss_pred ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQI 84 (277)
Q Consensus 6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v 84 (277)
+|+++..+|+.|.+.|+++.|..+++ |++|..-|.|++|++.+.+....++ .|...|+.+...|+ ..+.+=+.|..+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CCCCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 46677888999999999999998875 8899999999999999988888888 67778999998887 678888999999
Q ss_pred EEEECCCCce--------------eEEee---------------------------------------cccCceeEEEEe
Q 023772 85 FYWDVSTGRV--------------IRKFR---------------------------------------GHESEVNAVKFN 111 (277)
Q Consensus 85 ~~wd~~~~~~--------------~~~~~---------------------------------------~h~~~v~~i~~~ 111 (277)
.+|++..+.- ..++. +..+.+.+..+.
T Consensus 80 ~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9999865221 11110 011222222211
Q ss_pred c-CC--CEEEEEeCCCcEEEEeCccCCCc--------ceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCC--
Q 023772 112 E-YS--SVVVSAGYDQSLRAWDCRSHSTE--------PIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVG-- 176 (277)
Q Consensus 112 ~-~~--~~l~s~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~-- 176 (277)
. .+ -+++.|-.+|.+.+||+..+... -......+..++.++...+. .=++|+.+..+..|.+...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 1 11 14667778999999999864210 01112345666777766532 2345667777888887533
Q ss_pred cc-cc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeE
Q 023772 177 RE-LS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYI 252 (277)
Q Consensus 177 ~~-~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 252 (277)
.. +. ....--++.+.+-||++.+++++.|+.||+|+.++.+++..++-|.. -....+|+|+...+|++|+|+.|
T Consensus 240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--ceeEEEeCCCCchhhhccCCceE
Confidence 11 11 11223477788899999999999999999999999999998888853 34667899998999999999999
Q ss_pred EEEEC
Q 023772 253 YFWDL 257 (277)
Q Consensus 253 ~iwd~ 257 (277)
-+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.3e-17 Score=140.93 Aligned_cols=253 Identities=28% Similarity=0.494 Sum_probs=188.8
Q ss_pred cceeeccC-CcEEEEEE-eCCCC-EEEEEeC-CCcEEEEcCCC-CeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcE
Q 023772 11 ANVLKGHE-GAVLAARF-NGDGN-YCLSCGK-DRTIRLWNPHR-GIHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQI 84 (277)
Q Consensus 11 ~~~l~~H~-~~V~~~~~-~~~~~-~l~s~s~-d~~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v 84 (277)
...+.++. ..+..+.+ .+++. .++..+. |+.+++|+... ......+..|...|..+.|+|++..+++++. |+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 180 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCce
Confidence 33445533 37777777 78887 5555455 99999999987 7788899999999999999999998888885 9999
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceE-eeccccCc-EEEEEecCCeEEE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQ-IIDSFQDS-VMSVCLTKTEIIG 161 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 161 (277)
++|++..+..+..+..|...|.++++.|++. .+++++.|+.+++||.... .... .+..+... +..+......+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (466)
T COG2319 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG--KLLRSTLSGHSDSVVSSFSPDGSLLAS 258 (466)
T ss_pred EEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC--cEEeeecCCCCcceeEeECCCCCEEEE
Confidence 9999999888889999999999999999987 6666699999999987632 2222 34444444 3334444456778
Q ss_pred eecCCcEEEEEccCCcc-cc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe--ccccceeeeeeEe
Q 023772 162 GSVDGTVRTFDIRVGRE-LS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK--GHICKSFKTDCCL 236 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~-~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~ 236 (277)
++.|+.+++||++.... .. ..+...+.++.|+|++..+++++.|+.+++||..+........ .|.... ....+
T Consensus 259 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 336 (466)
T COG2319 259 GSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV--SSLSF 336 (466)
T ss_pred ecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCce--EEEEE
Confidence 99999999999986553 21 2345789999999988888889999999999998877666655 554422 22333
Q ss_pred cCCCceEEee-cCCCeEEEEECcCccceeeec
Q 023772 237 TNSDAHVTGG-SEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 237 ~~~~~~l~sg-s~d~~i~iwd~~~~~~~~~~~ 267 (277)
.+++..++.+ ..|+.+++|+...........
T Consensus 337 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 368 (466)
T COG2319 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368 (466)
T ss_pred CCCCCEEEEeecCCCcEEeeecCCCceeEEec
Confidence 3442444444 788999999999887333333
No 166
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.6e-20 Score=150.74 Aligned_cols=213 Identities=20% Similarity=0.303 Sum_probs=158.5
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEE-eccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTY-KSHGREVRDVHVTA--DNSKLISCGGDRQIFYW 87 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w 87 (277)
...|.||++-|+|+.|+.+|.+|+|||.|-.+.|||.-..+.+..+ .+|...|.++.|-| ++..++||+.|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3457899999999999999999999999999999998877766655 47999999999998 45678999999999999
Q ss_pred ECCC----------CceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCC-cceE----ee---ccccCc
Q 023772 88 DVST----------GRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHST-EPIQ----II---DSFQDS 148 (277)
Q Consensus 88 d~~~----------~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~-~~~~----~~---~~~~~~ 148 (277)
|+.. .+..+.+..|...|..++..|.+ +.+-+++.||+++-+|++.... .+-. .+ ....-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 23456678899999999999987 7899999999999999986321 1100 00 000112
Q ss_pred EEEEEec---CCeEEEeecCCcEEEEEccCCcc------------------ccc---CC---C-----CC---eeEEEEe
Q 023772 149 VMSVCLT---KTEIIGGSVDGTVRTFDIRVGRE------------------LSD---DL---G-----QP---VNCISMS 193 (277)
Q Consensus 149 ~~~~~~~---~~~~~~g~~d~~i~i~d~~~~~~------------------~~~---~~---~-----~~---v~~~~~s 193 (277)
..++..+ +..+++|+.|-..++||.|.... +.. .+ . .. .+-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 2233333 45699999999999999543211 000 00 0 11 3446899
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772 194 NDGNCILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 194 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
|+|.-|+..-....++++|+..++....|.
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 999888887666789999998776655443
No 167
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.84 E-value=1.2e-19 Score=152.30 Aligned_cols=203 Identities=18% Similarity=0.265 Sum_probs=156.9
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCC-----CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKD-----RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
..|-||.-.|.+++.+|+|+++||++.. ..|++|+..+-.....+.+|+-.|+.++|+|++++|+++|.|+++.+
T Consensus 519 ~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl 598 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSL 598 (764)
T ss_pred HHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEe
Confidence 4467999999999999999999998765 45799998887778889999999999999999999999999999999
Q ss_pred EECCCCc----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE--eeccccCcEEEEEecC----
Q 023772 87 WDVSTGR----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ--IIDSFQDSVMSVCLTK---- 156 (277)
Q Consensus 87 wd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~---- 156 (277)
|...... .....+.|+.-|++++|+|++.+++|+|.|.+|++|.........+. ....+...++++.+.+
T Consensus 599 ~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 599 YEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred eeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence 9875432 12346789999999999999999999999999999987654212111 2233455666666533
Q ss_pred ---CeEEEeecCCcEEEEEccCC-cccc-------c------CCCCCeeEEEEeCC----------CCEEEEEecCCeEE
Q 023772 157 ---TEIIGGSVDGTVRTFDIRVG-RELS-------D------DLGQPVNCISMSND----------GNCILASCLDSTLR 209 (277)
Q Consensus 157 ---~~~~~g~~d~~i~i~d~~~~-~~~~-------~------~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~ 209 (277)
..++.|...|.|.+|..... ++.. . .+...|+.+.|.|. ...|++|+.|..+|
T Consensus 679 e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vr 758 (764)
T KOG1063|consen 679 EKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVR 758 (764)
T ss_pred cccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeE
Confidence 13678889999999985411 1110 0 12246888999975 23468999999999
Q ss_pred EEECC
Q 023772 210 LLDRS 214 (277)
Q Consensus 210 ~wd~~ 214 (277)
++++.
T Consensus 759 i~nv~ 763 (764)
T KOG1063|consen 759 IFNVD 763 (764)
T ss_pred Eeecc
Confidence 99874
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.7e-19 Score=141.13 Aligned_cols=199 Identities=14% Similarity=0.216 Sum_probs=162.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCC
Q 023772 60 GREVRDVHVTADNSKLISCGGDRQIFYWDVST--GRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHST 136 (277)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~--~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~ 136 (277)
.+.|+++.|+|.-..+++++.|+++++|.+.. ...++++.--..||....|.|+|. .+++++.-.....||+.+...
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 36899999999999999999999999998864 456777777788999999999999 899999999999999987654
Q ss_pred cceEeecccc-CcE--EEEEecCCeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772 137 EPIQIIDSFQ-DSV--MSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLD 212 (277)
Q Consensus 137 ~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd 212 (277)
.++....+.. ..+ ..++...+.++..+..|.|.+-...+++.+.. .....+..++|+.+++.|++++.+|.|++||
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 4333332222 122 33445566788899999999988877765544 3457899999999999999999999999999
Q ss_pred CCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 213 RSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+++..+++.|.... ....+..|.++++.|+|+||..|.|.|||.++
T Consensus 373 l~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred cCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 99999999887653 34567788999999999999999999999665
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=134.99 Aligned_cols=186 Identities=19% Similarity=0.323 Sum_probs=143.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCce--eEEeeccc-Cce
Q 023772 31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTA--DNSKLISCGGDRQIFYWDVSTGRV--IRKFRGHE-SEV 105 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~wd~~~~~~--~~~~~~h~-~~v 105 (277)
..++++-..|+||+||..++..+..|+++...++.+.|.. ....+.+++.||+|++||+..... ...+.++. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4577777789999999999999999999999999999987 356789999999999999987543 44556665 566
Q ss_pred eEEEEecCCCEEEEEe----CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEEEEEccCCcc
Q 023772 106 NAVKFNEYSSVVVSAG----YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVRTFDIRVGRE 178 (277)
Q Consensus 106 ~~i~~~~~~~~l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~ 178 (277)
.+++.+..++.+++|. .|-.+.+||.|..+...-...+.|.+-|+.+.|.| +.+++|+.||.+.+||+....+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777777788888775 47889999998754422234567888888888864 5699999999999999976532
Q ss_pred cc-----cCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC
Q 023772 179 LS-----DDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG 216 (277)
Q Consensus 179 ~~-----~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~ 216 (277)
-. -.++..|.++.|..++ +.|.+-+...+..+|++..+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 11 1245678888888776 34667777888888887544
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.1e-17 Score=123.03 Aligned_cols=232 Identities=15% Similarity=0.309 Sum_probs=157.4
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee------EE--EEe-----ccCccEEEEEEcCCCCEEEEEeC
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH------IK--TYK-----SHGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~------~~--~~~-----~h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
.++|+++|..+.|. ..+|++|+. |.|+-|..+.... +- ... ..-..|+++.+.|..+-+++++.
T Consensus 58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG 134 (325)
T KOG0649|consen 58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG 134 (325)
T ss_pred ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC
Confidence 47999999999999 457888775 9999997543111 00 111 12346899999999888888889
Q ss_pred CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc----------CcEE
Q 023772 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ----------DSVM 150 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----------~~~~ 150 (277)
|+.+.-||+++|+..+++++|++.|.++.--.....+++|+.||++++||+++... +..+.... .-+.
T Consensus 135 D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~--v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 135 DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH--VSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce--eEEeccccChhhcCcccCceeE
Confidence 99999999999999999999999999998866677899999999999999987643 33332211 1234
Q ss_pred EEEecCCeEEEeecCCcEEEEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccce
Q 023772 151 SVCLTKTEIIGGSVDGTVRTFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKS 229 (277)
Q Consensus 151 ~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 229 (277)
+++.+.+-+++| ....+.+|+++..+.... ....++..+.|..+ .++++++.+.+.-|.+. |.+-..........
T Consensus 213 ala~~edWlvCG-gGp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 213 ALAVNEDWLVCG-GGPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVESTAC 288 (325)
T ss_pred EEeccCceEEec-CCCceeEEeccCCCceEEEecccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCCccce
Confidence 444444445554 456799999998765433 34567888888644 67888888889888885 33322222221122
Q ss_pred eeeeeEecCCCceEEeecCCCeEEEE
Q 023772 230 FKTDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 230 ~~~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
+......+| -+++..++..+.+.+.
T Consensus 289 ~s~s~~~~p-~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 289 YSASWQTSP-IKFISIAGFSNKLHIL 313 (325)
T ss_pred eeecccCCc-eEEEEecccceeeeee
Confidence 333333334 2344444444455443
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.7e-18 Score=137.10 Aligned_cols=121 Identities=25% Similarity=0.410 Sum_probs=108.5
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC--------C--------CeeEEEEeccCccEEEEEEcCCCCE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH--------R--------GIHIKTYKSHGREVRDVHVTADNSK 74 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~ 74 (277)
...|.+|..+|++++|+|+|++|+||+.+|.+-+|-.. + -...+.+.+|...|..++|+|++.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence 45688999999999999999999999999999999654 2 1234667889999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772 75 LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 75 l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~ 131 (277)
+++++.|.++++||+..|++...+..|...|..++|.|-.+++++-+.|...+.+.+
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA 194 (434)
T ss_pred eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence 999999999999999999999999999999999999999999999888887666654
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=5.8e-18 Score=134.16 Aligned_cols=137 Identities=26% Similarity=0.469 Sum_probs=110.7
Q ss_pred CCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCC---------eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEE
Q 023772 18 EGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRG---------IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYW 87 (277)
Q Consensus 18 ~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~w 87 (277)
..+|..+.|.++.. .++||+.|..||||-++.+ +....+..|...|+.+.|+|+++.+++|+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998776 9999999999999975432 2345677899999999999999999999999999999
Q ss_pred ECC--------C--------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772 88 DVS--------T--------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS 151 (277)
Q Consensus 88 d~~--------~--------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (277)
-.. + ..+.+.+.+|...|..++|.+++..+++++.|..+++||+..+.. ..+...|...+..
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqg 170 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL--LAILDDHEHYVQG 170 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee--Eeeccccccccce
Confidence 765 2 234566788999999999999999999999999999999986543 3334445555555
Q ss_pred EEecC
Q 023772 152 VCLTK 156 (277)
Q Consensus 152 ~~~~~ 156 (277)
+++++
T Consensus 171 vawDp 175 (434)
T KOG1009|consen 171 VAWDP 175 (434)
T ss_pred eecch
Confidence 55543
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=4.1e-18 Score=134.63 Aligned_cols=201 Identities=19% Similarity=0.284 Sum_probs=150.5
Q ss_pred EEeccCccEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC-------ceeEEeecccCceeEEEEecC-CCEEEEEeCCCc
Q 023772 55 TYKSHGREVRDVHVTAD-NSKLISCGGDRQIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQS 125 (277)
Q Consensus 55 ~~~~h~~~v~~~~~~~~-~~~l~t~s~d~~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~ 125 (277)
.+.+|.++|..++|.|- ...|++||.|.+|++|++..+ +++..+.+|...|.-+.|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 56789999999999994 567899999999999998643 456778899999999999997 568999999999
Q ss_pred EEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccccC---CCCCeeEEEEeCCCCEEE
Q 023772 126 LRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSDD---LGQPVNCISMSNDGNCIL 200 (277)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~~~~l~ 200 (277)
|.+||+.++. ....+. |++.+++++++ +..+++...|+.||+||.++++.+... .+.....+.|-.+|..+.
T Consensus 156 v~iWnv~tge--ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGE--ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCc--eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 9999997653 333344 89999998886 456999999999999999999876553 234455566777888544
Q ss_pred EEe---cCCeEEEEECCCCc-e--EEEEeccccceeeeeeEecCCCceEE-eecCCCeEEEEECcCcc
Q 023772 201 ASC---LDSTLRLLDRSTGE-L--LQEYKGHICKSFKTDCCLTNSDAHVT-GGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 201 ~~~---~d~~i~~wd~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~~~~~ 261 (277)
+|. .++.+-|||...-+ . .+++.... -.+-..+.+|..++. .|--|+.||.|.+.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSn---Gvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSN---GVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCC---ceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 442 57789999975432 2 23333322 123334456666665 46679999999998765
No 174
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.2e-18 Score=143.16 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=146.6
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----------CeeEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----------GIHIKTYKSHGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
.-.+++|++||.|+++..++..++|||-||+||.|++.. ......+.+|...|+.+++++...+|++++.
T Consensus 337 i~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred eEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence 456899999999999999999999999999999995431 1235678899999999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeec---ccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCc-ceEeecccc-------Cc
Q 023772 81 DRQIFYWDVSTGRVIRKFRG---HESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQ-------DS 148 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~---h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~-------~~ 148 (277)
||+++.|+.....+ .+|.. |.-+ .++++.... ...+ .+.....+++...... ...++.... ..
T Consensus 417 DgTvr~w~~~~~~~-~~f~~~~e~g~P-lsvd~~ss~~a~~~---~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP-CTFGEPKEHGYP-LSVDRTSSRPAHSL---ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred CceEEeeccCCcCc-cccCCccccCCc-ceEeeccchhHhhh---hhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 99999999876655 33332 2222 234443322 1111 2222333332221111 111111110 11
Q ss_pred EEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 149 VMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 149 ~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
+..+...+ ...+++..|+.|+++|..++..+.. .+...++++++.|+|-+|++++.|+.+++|.+....++.....
T Consensus 492 in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 492 INKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 22233233 3467889999999999998876654 3456799999999999999999999999999988888777665
Q ss_pred c
Q 023772 225 H 225 (277)
Q Consensus 225 ~ 225 (277)
|
T Consensus 572 ~ 572 (577)
T KOG0642|consen 572 H 572 (577)
T ss_pred c
Confidence 5
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.6e-18 Score=136.75 Aligned_cols=193 Identities=22% Similarity=0.306 Sum_probs=144.7
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG- 100 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~- 100 (277)
..++|+.+|..+++++.||++|||+...-..+.....|.+.|.+++|+|+++.|++.+.| ..+||+++++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 679999999999999999999999976666677778899999999999999999999999 999999999966655442
Q ss_pred -ccCceeEEEEecCC-----CEEEEEeCCCcEEEEeCccCCCc---ce-Eeeccc-cCcEEEEEecCCeEEEeecCCcEE
Q 023772 101 -HESEVNAVKFNEYS-----SVVVSAGYDQSLRAWDCRSHSTE---PI-QIIDSF-QDSVMSVCLTKTEIIGGSVDGTVR 169 (277)
Q Consensus 101 -h~~~v~~i~~~~~~-----~~l~s~~~d~~i~iwd~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~g~~d~~i~ 169 (277)
.......+.|..++ .+++....-+.|+.|++...... +. +....+ .-...++..+++.++.|+.||.+.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23345567777665 33444445566777776533221 11 111111 223345555677799999999999
Q ss_pred EEEccCCccc---ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 170 TFDIRVGREL---SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 170 i~d~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
+++..+.+.+ +..|...|+.+.|+|+.+++++-+.|..+.+.-+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9998766543 345667899999999999999999999988877654
No 176
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.3e-17 Score=128.24 Aligned_cols=195 Identities=19% Similarity=0.294 Sum_probs=143.3
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeecccc-CcE
Q 023772 73 SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-DSV 149 (277)
Q Consensus 73 ~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~ 149 (277)
..++++-..|.|++||..+++.+..|++++..++.+.|.. ....+.+|+.||+|++||+|............++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5677888899999999999999999999999999999987 5678999999999999999987665555554444 233
Q ss_pred EEEEec--CCeEEEee----cCCcEEEEEccCCcc-c---ccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCce
Q 023772 150 MSVCLT--KTEIIGGS----VDGTVRTFDIRVGRE-L---SDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGEL 218 (277)
Q Consensus 150 ~~~~~~--~~~~~~g~----~d~~i~i~d~~~~~~-~---~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~ 218 (277)
.++..+ .+.+++|+ .+-.+.+||.|..++ + ...+...|+++.|+|.. +.|++||.||.+.+||......
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 444443 23344443 245688999998766 2 34567789999999964 7899999999999999975432
Q ss_pred ----EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 219 ----LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 219 ----~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
+.++. +. ......-..++..+.+.+-+.....++|+++++..+..+...
T Consensus 201 eDaL~~viN-~~-sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~ 253 (376)
T KOG1188|consen 201 EDALLHVIN-HG-SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENP 253 (376)
T ss_pred hhhHHHhhc-cc-ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCc
Confidence 22222 11 111122223455567888889999999999999877766644
No 177
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=1.7e-17 Score=126.51 Aligned_cols=196 Identities=22% Similarity=0.235 Sum_probs=146.5
Q ss_pred ccCCcEEEEEEeCCC-----CEEEEEeCCCcEEEEcCCCCeeEE---------EEeccCccEEEEEEcC-CCCEEEEEeC
Q 023772 16 GHEGAVLAARFNGDG-----NYCLSCGKDRTIRLWNPHRGIHIK---------TYKSHGREVRDVHVTA-DNSKLISCGG 80 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~-----~~l~s~s~d~~v~iwd~~~~~~~~---------~~~~h~~~v~~~~~~~-~~~~l~t~s~ 80 (277)
-|.-|++.+.|.|+. ++|||+| ..+|+|.+...+... .-..+..++++..|.. +-++|.++|-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 688999999999975 3666655 489999876421111 1134667899999986 5578899999
Q ss_pred CCcEEEEECCCCc---eeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccc---cCcEEEEE
Q 023772 81 DRQIFYWDVSTGR---VIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF---QDSVMSVC 153 (277)
Q Consensus 81 d~~v~~wd~~~~~---~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~ 153 (277)
|.++.+||++++. +..++-+|..+|..++|...+ .+|+++|.||.+++||+|.. +...++... ..+...++
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~l--eHSTIIYE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSL--EHSTIIYEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccc--ccceEEecCCCCCCcceeec
Confidence 9999999999873 356788999999999999854 57999999999999999864 333333322 23455666
Q ss_pred ecC---CeEEEeecC-CcEEEEEccCCccc---ccCCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCC
Q 023772 154 LTK---TEIIGGSVD-GTVRTFDIRVGREL---SDDLGQPVNCISMSNDG-NCILASCLDSTLRLLDRST 215 (277)
Q Consensus 154 ~~~---~~~~~g~~d-~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~ 215 (277)
+++ +.+++-..| ..|.+.|+|..... ...+...|+.++|.|.. ..|.+++.|...-+||+.+
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 653 446655444 57999999875432 23567899999999964 6788999999999999864
No 178
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.6e-16 Score=135.95 Aligned_cols=240 Identities=15% Similarity=0.143 Sum_probs=165.7
Q ss_pred cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCee--EE----EEeccCccEEEEEEcCCC--CEEEEEeCCCcEEEE
Q 023772 17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIH--IK----TYKSHGREVRDVHVTADN--SKLISCGGDRQIFYW 87 (277)
Q Consensus 17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~--~~----~~~~h~~~v~~~~~~~~~--~~l~t~s~d~~v~~w 87 (277)
-..+|.++.|+| +..+|+.|..+|.|-+||+..+.. .. ....|..+|+.+.|..+- ..|+++|.||+|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456799999999 567888999999999999877644 11 234588899999997643 459999999999999
Q ss_pred ECCCCce------eEEee------cccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCC--C----cceEeeccccCc
Q 023772 88 DVSTGRV------IRKFR------GHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHS--T----EPIQIIDSFQDS 148 (277)
Q Consensus 88 d~~~~~~------~~~~~------~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~--~----~~~~~~~~~~~~ 148 (277)
+++.-.. ..... .-...+++++|.+. ...++.|+.+|.|..=.-.... . +....+..|.++
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8753211 11111 12346788888764 4678899999998773322211 1 123344556778
Q ss_pred EEEEEecCC---eEEEeecCCcEEEEEcc-CCccccc--CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCc--eE
Q 023772 149 VMSVCLTKT---EIIGGSVDGTVRTFDIR-VGRELSD--DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGE--LL 219 (277)
Q Consensus 149 ~~~~~~~~~---~~~~g~~d~~i~i~d~~-~~~~~~~--~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~--~~ 219 (277)
+.++..+|- .+++++ |-++++|... ....+.. .....+.+++|||... .++++..||.|.+||+.... ++
T Consensus 401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 888887753 355555 9999999976 3332222 2334599999999764 56777789999999996543 33
Q ss_pred EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 220 QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
....-+ ........+++.++.++.|...|.+.+|++.+
T Consensus 480 ~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 332222 22333344567799999999999999999965
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=7e-19 Score=150.58 Aligned_cols=214 Identities=19% Similarity=0.363 Sum_probs=163.9
Q ss_pred EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772 54 KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133 (277)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~ 133 (277)
+.+.+|..+|.|+.|...+.+|+||+.|..+|||.++++.+..++++|...++.++.+....+++++|.|..|++|-+..
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc------CC------------------------
Q 023772 134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD------DL------------------------ 183 (277)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~------~~------------------------ 183 (277)
. .++..+.+|.+.|+++.++|.. +.+.||++++||.+-...+.. ..
T Consensus 264 ~--~pvsvLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 264 G--APVSVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred C--chHHHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 4 5666778899999999998855 778899999999872111000 00
Q ss_pred --CCCeeEEEEeCCC-----------CEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCC-ceEEeecCC
Q 023772 184 --GQPVNCISMSNDG-----------NCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD-AHVTGGSED 249 (277)
Q Consensus 184 --~~~v~~~~~s~~~-----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d 249 (277)
.+...++++...+ .+.+++-.+-.+++|++.+|.+.....+|....+.++ +.|-+ +..++++.|
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd--~Hpfn~ri~msag~d 417 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLD--VHPFNPRIAMSAGYD 417 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeee--ecCCCcHhhhhccCC
Confidence 0111122222222 2333444555678899999988888888876666655 45544 445689999
Q ss_pred CeEEEEECcCccceeeec-cCccee
Q 023772 250 GYIYFWDLVDASVVAKFK-AHSLVV 273 (277)
Q Consensus 250 ~~i~iwd~~~~~~~~~~~-~h~~~v 273 (277)
|..-|||+-.|..++.+. +|.+.+
T Consensus 418 gst~iwdi~eg~pik~y~~gh~kl~ 442 (1113)
T KOG0644|consen 418 GSTIIWDIWEGIPIKHYFIGHGKLV 442 (1113)
T ss_pred CceEeeecccCCcceeeecccceee
Confidence 999999999998886554 665543
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=7.8e-17 Score=141.38 Aligned_cols=240 Identities=17% Similarity=0.289 Sum_probs=168.7
Q ss_pred CcEEEEEEeC--CCCEEEEEeCCCcEEEEcCCC-----CeeEEEEe-------ccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772 19 GAVLAARFNG--DGNYCLSCGKDRTIRLWNPHR-----GIHIKTYK-------SHGREVRDVHVTADNSKLISCGGDRQI 84 (277)
Q Consensus 19 ~~V~~~~~~~--~~~~l~s~s~d~~v~iwd~~~-----~~~~~~~~-------~h~~~v~~~~~~~~~~~l~t~s~d~~v 84 (277)
..|..+.+-. |..++++|+.||.||||+-.. .+.+..+. +..+.-.-++|..+..+|+++|.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 3477777754 557899999999999997322 22332221 111222446788888899988889999
Q ss_pred EEEECCCCceeEEeec-ccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCc--EEEEEecCC--
Q 023772 85 FYWDVSTGRVIRKFRG-HESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDS--VMSVCLTKT-- 157 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~-h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~~~~~-- 157 (277)
++||++...+...+.. ...-|+++.-+. .+++++.|-.||.+++||.+..... .+.....|.+. |..+.+.+.
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998887776653 344566666543 3689999999999999998865432 34444555555 666666542
Q ss_pred -eEEEeecCCcEEEEEccCCcc--ccc-----CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe------
Q 023772 158 -EIIGGSVDGTVRTFDIRVGRE--LSD-----DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK------ 223 (277)
Q Consensus 158 -~~~~g~~d~~i~i~d~~~~~~--~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------ 223 (277)
++++|+.||.|++||+|.... +.. ..+...+++..+++...+++|+. +.|+||++.. +.+..+.
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccc
Confidence 499999999999999998421 111 12446899999999999999988 9999999963 3333222
Q ss_pred ccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772 224 GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~ 261 (277)
+.... ......|+|---++|.|+.|..|.||.....+
T Consensus 1348 ~q~~g-s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1348 GQRIG-SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcCC-CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 22111 12345678877789999999999999987654
No 181
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.6e-16 Score=135.66 Aligned_cols=220 Identities=10% Similarity=0.117 Sum_probs=147.2
Q ss_pred ccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEe-CCCc
Q 023772 10 EANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCG-GDRQ 83 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~ 83 (277)
....+..|...+....|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ....+|+|++++|+.++ .++.
T Consensus 195 ~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 345567888899999999999999987654 4699999988754 3333333 44689999999888764 6776
Q ss_pred EEEE--ECCCCceeEEeecccCceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE
Q 023772 84 IFYW--DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII 160 (277)
Q Consensus 84 v~~w--d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (277)
..+| |+.+++. ..+..+...+....|+|+++.++.++ .++...+|++....... .... +......+.+++..++
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l~-~~~~~~~~SpDG~~ia 348 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLVG-GRGYSAQISADGKTLV 348 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEec-CCCCCccCCCCCCEEE
Confidence 6555 6666554 45566777788899999999766554 57888999875432222 2221 1112223444556677
Q ss_pred EeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC--CCCceEEEEeccccceeeeeeEecC
Q 023772 161 GGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR--STGELLQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
..+.++ +..||+.+++..............|+|+|++|+.++.++..++|++ .+++.++.+.+|... ....+++|
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~--~~~p~wsp 425 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ--VKFPAWSP 425 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC--CCCcccCC
Confidence 666655 5559998765322111123356789999999999999998888875 357777777766432 23344555
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=2.2e-15 Score=118.42 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=168.9
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCcee
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD--RQIFYWDVSTGRVI 95 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d--~~v~~wd~~~~~~~ 95 (277)
...+....|+.+...|..|+.||. ++|+................|-.+-|+. .+++-.+.+ +.+++.+.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 345677779999988888888876 8888665332212222233455555654 355544443 46999999888877
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc-ceEeeccccCcEEEEEecCC--eEEE--eecCCcEEE
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE-PIQIIDSFQDSVMSVCLTKT--EIIG--GSVDGTVRT 170 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~--g~~d~~i~i 170 (277)
..+. -..+|.++.++.+ +++.+-.+ .|.|||++....- .+......+..+.++.++.. +++- ....|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7665 4678888888864 55555554 4999999864321 11122223444555555543 3442 234689999
Q ss_pred EEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772 171 FDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 171 ~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
||..+-+.... .|..++.+++|+++|.+||++|+.|+ ||+|...+|+.+++|+-......+.+.+|++++.+|++.|
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99887665433 57789999999999999999999997 6899999999999998655566677789999999999999
Q ss_pred CCCeEEEEECcCcc
Q 023772 248 EDGYIYFWDLVDAS 261 (277)
Q Consensus 248 ~d~~i~iwd~~~~~ 261 (277)
..++|.++.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 99999999988754
No 183
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.76 E-value=6.3e-16 Score=137.55 Aligned_cols=252 Identities=15% Similarity=0.206 Sum_probs=172.9
Q ss_pred ceeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772 12 NVLKGHEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~ 83 (277)
..|..|+..|..++.+++. .+++|||.||+||+||... .+...++......+..+...+.++.++.++.||.
T Consensus 1042 AhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1042 AHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGS 1121 (1431)
T ss_pred ehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCe
Confidence 4467789999999888755 9999999999999999653 2334455555678999999999999999999999
Q ss_pred EEEEECCCCc-------eeEEeeccc-CceeEE-EEec-CC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE
Q 023772 84 IFYWDVSTGR-------VIRKFRGHE-SEVNAV-KFNE-YS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV 152 (277)
Q Consensus 84 v~~wd~~~~~-------~~~~~~~h~-~~v~~i-~~~~-~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
|.+.+++..+ ..+....+. +.+.+| ++.. .+ ..++.+...+.|..||++..............+.+.++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 9999987521 122222222 223222 2222 23 37888888999999999865433222233344567777
Q ss_pred EecCCe--EEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCC---CCEEEEEe--cCCeEEEEECCCCceEEEE
Q 023772 153 CLTKTE--IIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSND---GNCILASC--LDSTLRLLDRSTGELLQEY 222 (277)
Q Consensus 153 ~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~---~~~l~~~~--~d~~i~~wd~~~~~~~~~~ 222 (277)
+.++.. ++.|+..|.+.+||+|-+..+.. ....+++.+..+|. ....++++ ..+.+-+|++.+|.+.+.+
T Consensus 1202 ~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred EecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 777654 88999999999999987655432 22356777776663 34555544 5778999999998766655
Q ss_pred ecc-----------------ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce
Q 023772 223 KGH-----------------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 223 ~~~-----------------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~ 263 (277)
-.. ........+++...+.++.+|+.|..||.||....+..
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 432 01111233444455678899999999999998876544
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=2.7e-17 Score=134.81 Aligned_cols=185 Identities=19% Similarity=0.307 Sum_probs=144.1
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
....+|.++|.+-+|+|||.-|+|+|+||.|++|. ++|....++.....+|.|++|.|+.+.++-+.. +.+.+=.+..
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccc
Confidence 34568999999999999999999999999999997 667766666666789999999998876654432 3455555555
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF 171 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 171 (277)
...+-.++.|.+-|.+++|++..+++++|+.|-..++||-... +......+.-++++++++++.+..-+.-.++|+
T Consensus 176 n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~---~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~- 251 (737)
T KOG1524|consen 176 NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA---NLFTSAAEEYAITSVAFNPEKDYLLWSYNTARF- 251 (737)
T ss_pred ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCc---ccccCChhccceeeeeeccccceeeeeeeeeee-
Confidence 5556679999999999999999999999999999999996532 344445567788999998876433333345552
Q ss_pred EccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEE
Q 023772 172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRL 210 (277)
Q Consensus 172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~ 210 (277)
....-..|..++||+||..++.|...|.+.+
T Consensus 252 --------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 --------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred --------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 2223457899999999999999998887643
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=4.1e-16 Score=133.12 Aligned_cols=222 Identities=16% Similarity=0.125 Sum_probs=149.5
Q ss_pred CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCce--eEEeecccCceeEEEEecC
Q 023772 39 DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRV--IRKFRGHESEVNAVKFNEY 113 (277)
Q Consensus 39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~ 113 (277)
+..|.+||..... .+.+..|...+.+..|+|++++|+.++.+ ..|++||+.+++. +..+.+| .....|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 5789999975443 55666778889999999999999887754 3699999988753 3334443 346899999
Q ss_pred CCEEEEEe-CCCcEEEE--eCccCCCcceEeeccccCcEEEEEec--CCeEEEe-ecCCcEEEEEccCCc--ccccCCCC
Q 023772 114 SSVVVSAG-YDQSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGG-SVDGTVRTFDIRVGR--ELSDDLGQ 185 (277)
Q Consensus 114 ~~~l~s~~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g-~~d~~i~i~d~~~~~--~~~~~~~~ 185 (277)
++.|+.++ .+|.+.+| |+.... ...+..+........++ +..++.. ..++...+|++.... ........
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC
Confidence 99887764 68877766 443322 22222233333344444 4455544 457888888875321 11111111
Q ss_pred CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc--Cccce
Q 023772 186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV--DASVV 263 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~--~~~~~ 263 (277)
....|+|+|++|+..+.++ +.+||+.+++......... .....++|++++++.++.++.+++|++. +|+.+
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 4578999999998887765 5669998887543222221 1335689999999999999999988863 68889
Q ss_pred eeeccCcceeE
Q 023772 264 AKFKAHSLVVK 274 (277)
Q Consensus 264 ~~~~~h~~~v~ 274 (277)
.++.+|.+.+.
T Consensus 409 ~~l~~~~g~~~ 419 (429)
T PRK01742 409 ARLPGSDGQVK 419 (429)
T ss_pred EEccCCCCCCC
Confidence 99988876543
No 186
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=7.9e-15 Score=121.34 Aligned_cols=239 Identities=8% Similarity=0.050 Sum_probs=150.8
Q ss_pred cCCcEEEEEEeCCCCEEEEE-eCCCcEEEEcCC-CCee--EEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 023772 17 HEGAVLAARFNGDGNYCLSC-GKDRTIRLWNPH-RGIH--IKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVST 91 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~-s~d~~v~iwd~~-~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~ 91 (277)
+.+....+.++|++++|+.+ ..++.|.+|+.. ++.. ..... ..+....+.++|+++++++++. ++.|.+|++++
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 34567789999999988765 468999999886 3332 22222 2345678999999999888764 88999999974
Q ss_pred -Cc---eeEEeecccCceeEEEEecCCCEEEE-EeCCCcEEEEeCccCC-Ccc----eEeeccccCcEEEEEec--CCeE
Q 023772 92 -GR---VIRKFRGHESEVNAVKFNEYSSVVVS-AGYDQSLRAWDCRSHS-TEP----IQIIDSFQDSVMSVCLT--KTEI 159 (277)
Q Consensus 92 -~~---~~~~~~~h~~~v~~i~~~~~~~~l~s-~~~d~~i~iwd~~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~ 159 (277)
+. .+..+. +......+.++|++++++. ...++.|.+||+.... ... ...... ......+.++ +..+
T Consensus 112 ~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~l 189 (330)
T PRK11028 112 DGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYA 189 (330)
T ss_pred CCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEE
Confidence 32 233232 2334567889999988754 4567999999987521 110 001111 1122334444 4566
Q ss_pred EEeec-CCcEEEEEccCC--c--cccc--CC----C--CCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCceEEEEecc
Q 023772 160 IGGSV-DGTVRTFDIRVG--R--ELSD--DL----G--QPVNCISMSNDGNCILASC-LDSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 160 ~~g~~-d~~i~i~d~~~~--~--~~~~--~~----~--~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~ 225 (277)
++... +++|.+||+... + .+.. .. . .....+.|+|++++++++. .++.|.+|++........+.++
T Consensus 190 yv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 190 YCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred EEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE
Confidence 66554 899999999732 1 1110 00 1 1223588999999988875 4789999998543221122222
Q ss_pred cc-ceeeeeeEecCCCceEEeec-CCCeEEEEECc
Q 023772 226 IC-KSFKTDCCLTNSDAHVTGGS-EDGYIYFWDLV 258 (277)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~l~sgs-~d~~i~iwd~~ 258 (277)
.. ........++|+|++|+++. .+++|.+|+++
T Consensus 270 ~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 270 QPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 10 11233467899999988765 48999999874
No 187
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=5.5e-16 Score=118.21 Aligned_cols=243 Identities=17% Similarity=0.218 Sum_probs=172.2
Q ss_pred ceeeccCCcEEEEEEeCC-CCEEEEEeCC-------CcEEEEcCCCC---------eeEEEEe-ccCccEEEEEEcCCCC
Q 023772 12 NVLKGHEGAVLAARFNGD-GNYCLSCGKD-------RTIRLWNPHRG---------IHIKTYK-SHGREVRDVHVTADNS 73 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~-~~~l~s~s~d-------~~v~iwd~~~~---------~~~~~~~-~h~~~v~~~~~~~~~~ 73 (277)
..|..|.+.|..++-+|- .+.|+|+-+| ..+.||.+... +++..+. .+-+.|.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 446678899999999994 4566666443 35689986532 1222333 4557899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCce-eEEee-----cccCceeEEEEec--CCCEEEEEeCCCcEEEEeCccCCCcceEeeccc
Q 023772 74 KLISCGGDRQIFYWDVSTGRV-IRKFR-----GHESEVNAVKFNE--YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSF 145 (277)
Q Consensus 74 ~l~t~s~d~~v~~wd~~~~~~-~~~~~-----~h~~~v~~i~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 145 (277)
++++-. |..|.+|+++.+.. +..+. .|+...++-+|+| +++.+++ ..|+++..||+|+... ...+-..|
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~-~~sI~dAH 213 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKK-NNSIEDAH 213 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhh-hcchhhhh
Confidence 998775 88999999987654 33222 2455667778887 5777776 4689999999996533 33344556
Q ss_pred cCcEEEEEecCCe---EEEeecCCcEEEEEccCCccc-cc--CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCC--
Q 023772 146 QDSVMSVCLTKTE---IIGGSVDGTVRTFDIRVGREL-SD--DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRSTG-- 216 (277)
Q Consensus 146 ~~~~~~~~~~~~~---~~~g~~d~~i~i~d~~~~~~~-~~--~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~-- 216 (277)
...+..+.++|+. +++++.||.+++||.|..+.. .. .+.+-|.++.|+|.. +.|++|+.|..+.+|....-
T Consensus 214 gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSS 293 (370)
T KOG1007|consen 214 GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSS 293 (370)
T ss_pred cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccc
Confidence 6678888888764 899999999999999976533 22 345679999999964 56789999999999975321
Q ss_pred ---------------------------ceEEEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcC
Q 023772 217 ---------------------------ELLQEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 217 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~ 259 (277)
.++.+|..|+..++. +.+++-+.+ +|+=|.||.+-|=.+..
T Consensus 294 E~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~--~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 294 EQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA--LAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccccCcchhhHHhcccccccccccccccccceEE--EeeccCCCeeEEEeccCceEEeecCCh
Confidence 123456667655544 456666666 56678999987766653
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=8.5e-16 Score=135.01 Aligned_cols=252 Identities=17% Similarity=0.270 Sum_probs=169.6
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccC---ccEEEEEEcC--CCCEEEEEeCCCcEEEEEC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHG---REVRDVHVTA--DNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~---~~v~~~~~~~--~~~~l~t~s~d~~v~~wd~ 89 (277)
.+...+-..+.|+|=...++++...-.|+|||.+.++.+..|..+. ..|+.+.+.. +..++++|+.||.|++|+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 3444566778899988899998888899999999998888776543 4588888864 4468999999999999974
Q ss_pred C-C----CceeEEeec-------ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--
Q 023772 90 S-T----GRVIRKFRG-------HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT-- 155 (277)
Q Consensus 90 ~-~----~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (277)
- + -+++..+.+ ..+.-.-++|......++++|.-..|+|||....... ..+.......++++..+
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~-~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVV-ADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeE-eecccCCCccceeeccccc
Confidence 2 2 233433321 1111133567666667777777899999998643221 11112223334444433
Q ss_pred -CCeEEEeecCCcEEEEEccCCcc-----cccCCCC--CeeEEEEeCCCC-EEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772 156 -KTEIIGGSVDGTVRTFDIRVGRE-----LSDDLGQ--PVNCISMSNDGN-CILASCLDSTLRLLDRSTGELLQEYKGHI 226 (277)
Q Consensus 156 -~~~~~~g~~d~~i~i~d~~~~~~-----~~~~~~~--~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 226 (277)
++.++.|-.||.+++||.|.... ....+.. +|..+.+.+.|- .|++|+.||.|++||++.......+.-..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 46689999999999999986532 1223333 488899988764 49999999999999998753322221111
Q ss_pred cc---eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 227 CK---SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 227 ~~---~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
.. ...+....++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYN 1343 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccC
Confidence 01 11233455678889999998 999999987 6666666644
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.74 E-value=4.3e-17 Score=136.19 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=143.2
Q ss_pred cCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCC-------eeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEE
Q 023772 17 HEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRG-------IHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYW 87 (277)
Q Consensus 17 H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~w 87 (277)
....|+.+.|+| |...|+.++.||.|++|.+..+ ..-..+..|...|.++.|+| -.+.|++++.|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 446799999998 7789999999999999987653 34567889999999999998 45678999999999999
Q ss_pred ECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc---ccCcEEEEEecCCeEEEeec
Q 023772 88 DVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS---FQDSVMSVCLTKTEIIGGSV 164 (277)
Q Consensus 88 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~ 164 (277)
|+.+++....+.+|++.|.+++|+|+|+.++|.+.||++++|+.++.. .+++.-.. ..+.-..+..++..+++.+.
T Consensus 706 Dl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf 784 (1012)
T KOG1445|consen 706 DLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGF 784 (1012)
T ss_pred ehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecc
Confidence 999999989999999999999999999999999999999999988643 23322111 11112233446666666665
Q ss_pred CC----cEEEEEccCCc--ccccC---CCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCC
Q 023772 165 DG----TVRTFDIRVGR--ELSDD---LGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTG 216 (277)
Q Consensus 165 d~----~i~i~d~~~~~--~~~~~---~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~ 216 (277)
|+ .|.+||-.+-. .+... ....+.--.+++|.+ .+++|-.|..|++|.+-..
T Consensus 785 dk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 785 DKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 54 46667654311 11100 000111112344544 5677888999999997543
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.5e-15 Score=130.96 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=100.7
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC----CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR----GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..|.-.+++.+++|+++++++|..||.|.+|.--. ......+.-|..+|.++.|+++|.+|++||..+.+-+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777799999999999999999999999996321 23356788899999999999999999999999999999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
+++ .+-+..-.++|..+.++||+.+.+....|..|.+-...
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 988 33344557899999999999999999999999998753
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=1.7e-14 Score=119.41 Aligned_cols=223 Identities=13% Similarity=0.220 Sum_probs=146.1
Q ss_pred EEeCCCcEEEEcCCC-Ce--eEEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECC-CCce--eEEeecccCceeE
Q 023772 35 SCGKDRTIRLWNPHR-GI--HIKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVS-TGRV--IRKFRGHESEVNA 107 (277)
Q Consensus 35 s~s~d~~v~iwd~~~-~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~-~~~~--~~~~~~h~~~v~~ 107 (277)
+...|+.|++|++.+ ++ .+..+. +.+....+.++|++++|+.++ .++.|.+|+++ +++. +.... .......
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 447789999999864 33 445554 345678899999999887664 58899999986 3332 22222 2334567
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEeCccCCC--cceEeeccccCcEEEEEec--CCeE-EEeecCCcEEEEEccCCcccc-
Q 023772 108 VKFNEYSSVVVSAGY-DQSLRAWDCRSHST--EPIQIIDSFQDSVMSVCLT--KTEI-IGGSVDGTVRTFDIRVGRELS- 180 (277)
Q Consensus 108 i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~-~~g~~d~~i~i~d~~~~~~~~- 180 (277)
+.++|+++.+++++. ++.|.+|++..... ......... .....+.++ ++.+ ++...++.|.+||+.....+.
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998888764 88999999863211 122222111 122333344 4455 455567999999997633221
Q ss_pred -------cCCCCCeeEEEEeCCCCEEEEEec-CCeEEEEECCC--Cc--eEEEEeccc----cceeeeeeEecCCCceEE
Q 023772 181 -------DDLGQPVNCISMSNDGNCILASCL-DSTLRLLDRST--GE--LLQEYKGHI----CKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 181 -------~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~~wd~~~--~~--~~~~~~~~~----~~~~~~~~~~~~~~~~l~ 244 (277)
...+.....+.|+|+|++++++.. +++|.+||+.. ++ .++.+.... .......+.++|++++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 123445678999999999878765 89999999963 32 344433211 111233467899999988
Q ss_pred eec-CCCeEEEEECcCc
Q 023772 245 GGS-EDGYIYFWDLVDA 260 (277)
Q Consensus 245 sgs-~d~~i~iwd~~~~ 260 (277)
++. .++.|.+|++.+.
T Consensus 244 v~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 244 ACDRTASLISVFSVSED 260 (330)
T ss_pred EecCCCCeEEEEEEeCC
Confidence 875 4789999998654
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.3e-15 Score=113.58 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=141.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772 62 EVRDVHVTADNSKLISCGGDRQIFYWDVST----------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~ 131 (277)
.|.+-+++|..++|+.|+.+|+|.++.+.+ ...+-.+++|..++..+.|. ..++++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 466678999999999999999999999852 23455678999999999998 34677765 599999986
Q ss_pred ccCCC----c-------ceEe--eccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCC
Q 023772 132 RSHST----E-------PIQI--IDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDG 196 (277)
Q Consensus 132 ~~~~~----~-------~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~ 196 (277)
+.... + +.+. .....-....+.+..+.++.++.|+.+..||+++++.... .+..-+.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54221 0 0010 1111122333444455688888999999999999875443 445568888774455
Q ss_pred CEEEEEecCCeEEEEECCCCceEEEEecccccee------eeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 197 NCILASCLDSTLRLLDRSTGELLQEYKGHICKSF------KTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 197 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
..+++|++||++|+||.++++.++.+..-.++.. ....++..++.+++.|. .-.+-+|+++..++...|.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 5699999999999999999999887654322111 01123445667777665 3468899999998887776
No 193
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=2.9e-16 Score=121.45 Aligned_cols=224 Identities=17% Similarity=0.276 Sum_probs=159.9
Q ss_pred CcEEEEEEe-------CCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--cCc---cEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 19 GAVLAARFN-------GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--HGR---EVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 19 ~~V~~~~~~-------~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--h~~---~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
+.|...+|- |+..++++.+.|.-|.+||.-+|+....+++ |.. .-.++.|+|+|.+|++| ...+|++
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirv 183 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRV 183 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEE
Confidence 345565653 6788999999999999999999988777654 333 34689999999999865 6779999
Q ss_pred EEC-CCCc--eeEEeec-----ccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--
Q 023772 87 WDV-STGR--VIRKFRG-----HESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT-- 155 (277)
Q Consensus 87 wd~-~~~~--~~~~~~~-----h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (277)
||+ ..|+ .+++... ..+-+.+++|+|-.. .++.++.-..+-||.-. ...+.+.+..+.+.|+.+.+.
T Consensus 184 Fdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~--~~~pl~llggh~gGvThL~~~ed 261 (406)
T KOG2919|consen 184 FDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD--GRRPLQLLGGHGGGVTHLQWCED 261 (406)
T ss_pred eeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC--CCCceeeecccCCCeeeEEeccC
Confidence 999 4443 2222222 366788999999654 88889988888887643 345677888999999887765
Q ss_pred CCeEEEee-cCCcEEEEEccCCcccccC-------CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEeccc
Q 023772 156 KTEIIGGS-VDGTVRTFDIRVGRELSDD-------LGQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHI 226 (277)
Q Consensus 156 ~~~~~~g~-~d~~i~i~d~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~ 226 (277)
++.+.+|+ .|..|..||+|..+.+... ..+.|. ....|++++|++|+.||.|++||++. ++.+..+..+.
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s 340 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS 340 (406)
T ss_pred cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCccccccccc
Confidence 56677765 4778999999976644322 223332 35578999999999999999999987 77666665543
Q ss_pred cceeeeeeEecCCCceEEeecC
Q 023772 227 CKSFKTDCCLTNSDAHVTGGSE 248 (277)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~sgs~ 248 (277)
.- ...+++.|--.+++++|-
T Consensus 341 d~--vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 341 DT--VNGVSLNPIMPILATSSG 360 (406)
T ss_pred cc--ccceecCcccceeeeccC
Confidence 21 122345555556666543
No 194
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.4e-15 Score=128.91 Aligned_cols=245 Identities=20% Similarity=0.367 Sum_probs=190.8
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEe
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNS---KLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..-.|++|+++++-+.. ..|+||...|+.++..+..|..++..+.+.|... ++++++.||.|++||-..+++++++
T Consensus 20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 34668999998877654 6999999999999999999999999999988654 6779999999999997666544333
Q ss_pred e-------------------------------------------------------------------------------
Q 023772 99 R------------------------------------------------------------------------------- 99 (277)
Q Consensus 99 ~------------------------------------------------------------------------------- 99 (277)
.
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~ 178 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV 178 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE
Confidence 0
Q ss_pred ------------------------cccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc--CCCcceEeeccccCcEEEEE
Q 023772 100 ------------------------GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS--HSTEPIQIIDSFQDSVMSVC 153 (277)
Q Consensus 100 ------------------------~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~ 153 (277)
.|.-.+++.+++|.+++++++..||.|.+|.--. ........++.|.+.+..+.
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~ 258 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLS 258 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeE
Confidence 1555578888999999999999999999996433 33445667888878877776
Q ss_pred ec--CCeEEEeecCCcEEEEEccCCc-ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc----
Q 023772 154 LT--KTEIIGGSVDGTVRTFDIRVGR-ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI---- 226 (277)
Q Consensus 154 ~~--~~~~~~g~~d~~i~i~d~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---- 226 (277)
++ +.++++|+.++-+.+|.+.+++ ++....+.+|..+.+|||+.+.+...+|..|.+-...+.....++.|-.
T Consensus 259 fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 259 FSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred EecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 65 5669999999999999998875 3445678899999999999999999999999999876554433333211
Q ss_pred -----cceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 227 -----CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 227 -----~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
-....+..++.|.-+.++-.+..|.|.+||+.+.+.+.++.
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEE
Confidence 12233445566755667777889999999999888777665
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.2e-15 Score=116.48 Aligned_cols=196 Identities=19% Similarity=0.312 Sum_probs=149.3
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee-EEEE-----eccCccEEEEEEcC--CCCEEEEEeCCCcEEEE
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH-IKTY-----KSHGREVRDVHVTA--DNSKLISCGGDRQIFYW 87 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~~l~t~s~d~~v~~w 87 (277)
.|-+.|.|+.|-|++..|++-. |..|.+|++..+.. ...+ .+|....++-+|+| +++.+++. .|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 5667999999999999998865 89999999877644 2222 23566778889998 55566654 58999999
Q ss_pred ECCCCceeEEee-cccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe---EEEe
Q 023772 88 DVSTGRVIRKFR-GHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE---IIGG 162 (277)
Q Consensus 88 d~~~~~~~~~~~-~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g 162 (277)
|+.+.....++. +|...|..++|+|+.+ +|+||+.||.|++||.|.. ..+++.+..|..-+.++.+++.+ +++|
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC-CccccccCCCceEEEEEEecCccceEEEec
Confidence 999877665553 6888999999999854 6899999999999999875 45777888888888888887643 8899
Q ss_pred ecCCcEEEEEccCCc---c---------------------c-------ccCCCCCeeEEEEeCCCCEEEE-EecCCeEEE
Q 023772 163 SVDGTVRTFDIRVGR---E---------------------L-------SDDLGQPVNCISMSNDGNCILA-SCLDSTLRL 210 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~---~---------------------~-------~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~ 210 (277)
+.|..+.+|-...-. . + ...+...|.+++||....++++ -+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 999999988653210 0 0 1123457999999998887655 488998877
Q ss_pred EECC
Q 023772 211 LDRS 214 (277)
Q Consensus 211 wd~~ 214 (277)
=.+.
T Consensus 358 s~V~ 361 (370)
T KOG1007|consen 358 SSVP 361 (370)
T ss_pred ecCC
Confidence 6553
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.2e-16 Score=128.96 Aligned_cols=214 Identities=21% Similarity=0.331 Sum_probs=150.4
Q ss_pred EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecccCceeEEEEecC--CCEEEEEeCCCcEEEE
Q 023772 53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF-RGHESEVNAVKFNEY--SSVVVSAGYDQSLRAW 129 (277)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~-~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iw 129 (277)
...+.+|.+.|++++|+.+|.+|++||.|-.+.|||.-..+++..+ .+|...|.++.|-|. .++++||+.|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467899999999999999999999999999999999877777665 489999999999885 6789999999999999
Q ss_pred eCccCC--------CcceEeeccccCcEEEEEe---cCCeEEEeecCCcEEEEEccCCccccc----------CCC--CC
Q 023772 130 DCRSHS--------TEPIQIIDSFQDSVMSVCL---TKTEIIGGSVDGTVRTFDIRVGRELSD----------DLG--QP 186 (277)
Q Consensus 130 d~~~~~--------~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~d~~i~i~d~~~~~~~~~----------~~~--~~ 186 (277)
|+.... .++.....-|...+..+.. .|+.+++++.||+|+-||+|....... ... -.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 997421 1122222333344433333 346699999999999999986322111 111 24
Q ss_pred eeEEEEeCCC-CEEEEEecCCeEEEEECCC--------C----------ceEEEEe-ccccc------ee---eeeeEec
Q 023772 187 VNCISMSNDG-NCILASCLDSTLRLLDRST--------G----------ELLQEYK-GHICK------SF---KTDCCLT 237 (277)
Q Consensus 187 v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~--------~----------~~~~~~~-~~~~~------~~---~~~~~~~ 237 (277)
..|++++|.. .+|+.|+.|-..++||.+. + .+++.|. +|.+. .. .+-..|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 6789999965 5678899999999999421 1 1244333 33211 11 1234578
Q ss_pred CCCceEEeecCCCeEEEEECcCccceeee
Q 023772 238 NSDAHVTGGSEDGYIYFWDLVDASVVAKF 266 (277)
Q Consensus 238 ~~~~~l~sgs~d~~i~iwd~~~~~~~~~~ 266 (277)
|+|.-|...-..-.|+++|+..++....+
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 88765554333447999999987765443
No 197
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.71 E-value=3e-16 Score=131.24 Aligned_cols=205 Identities=19% Similarity=0.297 Sum_probs=153.6
Q ss_pred cceeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeE------EEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772 11 ANVLKGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHI------KTYKSHGREVRDVHVTADNSKLISCGGDRQ 83 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~ 83 (277)
...|.+|.+.|+.+.|+| ...+|+|||.|..|+||.+..|... ..+.+.+-.+.++.|+|...-|+..+..|+
T Consensus 72 i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~ 151 (1012)
T KOG1445|consen 72 IGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGS 151 (1012)
T ss_pred cceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCce
Confidence 456789999999999998 4568899999999999998754221 123334456889999998777888888999
Q ss_pred EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE-EEEEecCC--eEE
Q 023772 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV-MSVCLTKT--EII 160 (277)
Q Consensus 84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 160 (277)
+++||+.+++.+..+.+|...|.++.|+.||.+++++..|..|+|||.+.. .++++..+.|+..- ..+.+-++ .++
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~-~~piQ~te~H~~~rdsRv~w~Gn~~rli 230 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRAS-MEPIQTTEGHGGMRDSRVLWAGNWERLI 230 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccC-CCccccccccccchhheeeeccchhhhh
Confidence 999999999999999999999999999999999999999999999999864 56777777665431 23445554 466
Q ss_pred EeecC----CcEEEEEccCCcccc-c---CCCCCeeEEEEeCCCCEE-EEEecCCeEEEEECCCC
Q 023772 161 GGSVD----GTVRTFDIRVGRELS-D---DLGQPVNCISMSNDGNCI-LASCLDSTLRLLDRSTG 216 (277)
Q Consensus 161 ~g~~d----~~i~i~d~~~~~~~~-~---~~~~~v~~~~~s~~~~~l-~~~~~d~~i~~wd~~~~ 216 (277)
+.+.+ +.+++||.+...... . ....-+..--|+||.++| ++|-.+.+|+.+.+...
T Consensus 231 sTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~ 295 (1012)
T KOG1445|consen 231 STGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDR 295 (1012)
T ss_pred hcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCC
Confidence 66555 468899987542211 1 112233334578887665 45556778888887554
No 198
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.8e-15 Score=125.68 Aligned_cols=221 Identities=17% Similarity=0.231 Sum_probs=156.6
Q ss_pred eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE-EEEEeCCCcEEEE
Q 023772 51 IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV-VVSAGYDQSLRAW 129 (277)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~-l~s~~~d~~i~iw 129 (277)
.+...+++|.+.|+++...|.|..|++|+.||+|++|.+.+|.+++++. -.+.|.+++|+|.... ++.++.+..+.+-
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv 469 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV 469 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence 4556789999999999999999999999999999999999999999887 4668999999997653 3333333445554
Q ss_pred eCccCCC-----------------c------------------ceEeeccccCcEEEEEec--CCeEEEeec---CCcEE
Q 023772 130 DCRSHST-----------------E------------------PIQIIDSFQDSVMSVCLT--KTEIIGGSV---DGTVR 169 (277)
Q Consensus 130 d~~~~~~-----------------~------------------~~~~~~~~~~~~~~~~~~--~~~~~~g~~---d~~i~ 169 (277)
+..-+.. + .+.+.-.+...+..+.+. ++++++... .+.+.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 4321100 0 011112234445555554 455665433 45688
Q ss_pred EEEccCCcc--cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec
Q 023772 170 TFDIRVGRE--LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 170 i~d~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
|+++...+. ........+.++.|+|...+|+.++. ..+++||+....+++.+... .......+++|.|.-|+.|+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGS 626 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEec
Confidence 888865432 22234567999999999998888764 57999999887776654322 22334456788888899999
Q ss_pred CCCeEEEEECcCc-cceeeeccCcceeEe
Q 023772 248 EDGYIYFWDLVDA-SVVAKFKAHSLVVKL 275 (277)
Q Consensus 248 ~d~~i~iwd~~~~-~~~~~~~~h~~~v~~ 275 (277)
.|+.+..+|+.-+ +..++++-|..+++-
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~ 655 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRS 655 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhh
Confidence 9999999999875 567888888877753
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.4e-14 Score=112.03 Aligned_cols=203 Identities=16% Similarity=0.247 Sum_probs=160.0
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC---eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC-C
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG---IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV-S 90 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~-~ 90 (277)
.--.++|+|-+|++|+..++.+-+...|-||..... +..++++.|...|+.++|.|..++|++++.|...++|.. +
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 334589999999999999999999999999986544 467899999999999999999999999999999999998 3
Q ss_pred CC--ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce--EeeccccCcEEEEEecCCe--EEEeec
Q 023772 91 TG--RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI--QIIDSFQDSVMSVCLTKTE--IIGGSV 164 (277)
Q Consensus 91 ~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~g~~ 164 (277)
.+ ++.-.+..++...+++.|+|..+.|+.||.-+.|.+|-....+...+ .+...+...+.++++.++. ++.|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 33 34445667888999999999999999999999999998765432211 1223445667888887765 778999
Q ss_pred CCcEEEEEccCC------------cc------ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCc
Q 023772 165 DGTVRTFDIRVG------------RE------LSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGE 217 (277)
Q Consensus 165 d~~i~i~d~~~~------------~~------~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~ 217 (277)
|+..|+|..... .. +.. ..+.-+..+.|+|.|+.|+-.+.|.++.+-|.....
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999864211 00 111 123458899999999999999999999999986543
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.4e-15 Score=121.28 Aligned_cols=194 Identities=21% Similarity=0.250 Sum_probs=139.7
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID 143 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 143 (277)
..++|+.++..+++++.||++|+|+..+...+.....|..+|.+++|+||++.|++-+.| ..++|+.++........-.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999987777777788899999999999999999999999 8999998875221111100
Q ss_pred cccCcEEEEEec--C---Ce-EEEe-ecCCcEEEEEccCCcc-----ccc--CCCCCeeEEEEeCCCCEEEEEecCCeEE
Q 023772 144 SFQDSVMSVCLT--K---TE-IIGG-SVDGTVRTFDIRVGRE-----LSD--DLGQPVNCISMSNDGNCILASCLDSTLR 209 (277)
Q Consensus 144 ~~~~~~~~~~~~--~---~~-~~~g-~~d~~i~i~d~~~~~~-----~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 209 (277)
........|.+. + .. +++- .--+.++.||+..... ... .-...+++++++++|++++.|+.||.+-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 111111122222 1 11 2222 2234566666543211 111 1124799999999999999999999999
Q ss_pred EEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 210 LLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 210 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+++..+-+.++..+. .+...++...|+|+.+++++-|.|.++.+-.+.-
T Consensus 307 i~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999988777765442 2245678889999999999999999998887653
No 201
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.69 E-value=4.4e-15 Score=115.91 Aligned_cols=241 Identities=19% Similarity=0.297 Sum_probs=167.9
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCe----eEEEEeccC------------ccEEEEEEcCCCC--EEEEEe
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGI----HIKTYKSHG------------REVRDVHVTADNS--KLISCG 79 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~----~~~~~~~h~------------~~v~~~~~~~~~~--~l~t~s 79 (277)
+-|.++.|...|++|+||..+|.|-++.-. ..+ ....++.|. ..|..+.|.++++ .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 457899999999999999999999999532 221 344555553 4578888887654 577788
Q ss_pred CCCcEEEEECCCCce-----------------------------------eEEe-ecccCceeEEEEecCCCEEEEEeCC
Q 023772 80 GDRQIFYWDVSTGRV-----------------------------------IRKF-RGHESEVNAVKFNEYSSVVVSAGYD 123 (277)
Q Consensus 80 ~d~~v~~wd~~~~~~-----------------------------------~~~~-~~h~~~v~~i~~~~~~~~l~s~~~d 123 (277)
.|++||+|-+..... .+.+ .+|+--|+++.++.|.+.++++ .|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 999999998742110 0111 2588889999999999999875 67
Q ss_pred CcEEEEeCccCCCcceEeec-------cccCcEEEEEecCCe---EEEeecCCcEEEEEccCCccc------cc-CC---
Q 023772 124 QSLRAWDCRSHSTEPIQIID-------SFQDSVMSVCLTKTE---IIGGSVDGTVRTFDIRVGREL------SD-DL--- 183 (277)
Q Consensus 124 ~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~~g~~d~~i~i~d~~~~~~~------~~-~~--- 183 (277)
=.|.+|++..... ...+.+ .....+++..+.|.+ ++-.+..|+|++-|+|..... .. ..
T Consensus 185 LRINLWnlei~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred eeeeeccccccCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 8899999864321 111211 112234455555533 666788999999999854211 11 10
Q ss_pred --------CCCeeEEEEeCCCCEEEEEecCCeEEEEEC-CCCceEEEEecccc-------------ceeeeeeEecCCCc
Q 023772 184 --------GQPVNCISMSNDGNCILASCLDSTLRLLDR-STGELLQEYKGHIC-------------KSFKTDCCLTNSDA 241 (277)
Q Consensus 184 --------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 241 (277)
-..|..+.|++.|+|+++-.. -++++||+ ...+++.++..|.. ..-...|+++.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 135788899999999887533 58999999 44677777776631 11235688899999
Q ss_pred eEEeecCCCeEEEEECcCccc
Q 023772 242 HVTGGSEDGYIYFWDLVDASV 262 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~~~~ 262 (277)
+++|||-.+..++++...|..
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred eEecccccceEEEecCCCCcc
Confidence 999999999999999777644
No 202
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=4.9e-14 Score=108.96 Aligned_cols=234 Identities=19% Similarity=0.356 Sum_probs=158.3
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc--cEEEEEEcCCCCEEE-EEeCC------CcEEEEECC
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR--EVRDVHVTADNSKLI-SCGGD------RQIFYWDVS 90 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~-t~s~d------~~v~~wd~~ 90 (277)
...+++|+.|.. +++++.|.-.|||+.+.-+....-+.+.+ .+..+-|- .++++ .||.+ .+|.+||-.
T Consensus 7 ~~lsvs~NQD~S-cFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHS-CFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCc-eEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence 355699998864 45667778889999876433222222222 22223232 23443 33333 579999977
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecC-Ce-EEE-eecC
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTK-TE-IIG-GSVD 165 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~~~-g~~d 165 (277)
..+++.++. -..+|.++.+.++ .++.. .++.|++|..... +.....++ ..+....++++.. .. ++- |..-
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 777877776 5789999999876 44443 4678999987632 22222222 1122333333322 22 332 4455
Q ss_pred CcEEEEEccCCcc----cccCCCCCeeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 166 GTVRTFDIRVGRE----LSDDLGQPVNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 166 ~~i~i~d~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
|.|++-|+...+. +...+...|.|++++-+|..+|++|..|+ |||||..+|+++++++-.......-..+|||+.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS 238 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc
Confidence 8899999875443 23356789999999999999999999996 699999999999998865545556667899999
Q ss_pred ceEEeecCCCeEEEEECcCcc
Q 023772 241 AHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 241 ~~l~sgs~d~~i~iwd~~~~~ 261 (277)
.+|+.+|.-|++.|+.++...
T Consensus 239 s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 239 SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEEEEEcCCCeEEEEEeecCC
Confidence 999999999999999988754
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=9.7e-15 Score=123.03 Aligned_cols=204 Identities=17% Similarity=0.229 Sum_probs=149.1
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE----------EEe---------------------
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK----------TYK--------------------- 57 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~----------~~~--------------------- 57 (277)
...+.|+||++.|.|++|+.||+.++||+.|..|.+|+..-.-.++ .|+
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q 123 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ 123 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence 4467899999999999999999999999999999999854221111 010
Q ss_pred ----c--cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEeecccCceeEEEEecCC-----CEEEEEeCCC
Q 023772 58 ----S--HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV--IRKFRGHESEVNAVKFNEYS-----SVVVSAGYDQ 124 (277)
Q Consensus 58 ----~--h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~~-----~~l~s~~~d~ 124 (277)
. -...|.+++|..+|++++-|-.+|+|.+=+-...+. +..-.+.+++|++++|+|.. ..++......
T Consensus 124 K~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~q 203 (1081)
T KOG1538|consen 124 KSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQ 203 (1081)
T ss_pred hhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccc
Confidence 1 124577888888999999999999999886543332 22333567899999999863 4677777888
Q ss_pred cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEE
Q 023772 125 SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILAS 202 (277)
Q Consensus 125 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~ 202 (277)
++..+.+.......... -.+..-+.++.+++..++.|+.|+.+.+|.- .+-.+-+ ...+-|.+++..|++++++.|
T Consensus 204 TLSFy~LsG~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 204 TLSFYQLSGKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred eeEEEEecceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEE
Confidence 88888775432211111 1234456777788899999999999999863 3322221 345679999999999999999
Q ss_pred ecCCeEEEEECC
Q 023772 203 CLDSTLRLLDRS 214 (277)
Q Consensus 203 ~~d~~i~~wd~~ 214 (277)
+.||+|-.|++-
T Consensus 282 CqDGTiACyNl~ 293 (1081)
T KOG1538|consen 282 CQDGTIACYNLI 293 (1081)
T ss_pred EccCeeehhhhH
Confidence 999999999863
No 204
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=1.7e-14 Score=128.74 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=158.2
Q ss_pred EcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------ceeEEeecccCceeEEEEecCCCE
Q 023772 45 WNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVSTG-------RVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 45 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~~~-------~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
|++ .|..+..+..|...+..++.++.. .+++|||.||+||+|++..- +...++..-.+++..+...+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 478888999999999999998776 89999999999999998531 223344445678889999999999
Q ss_pred EEEEeCCCcEEEEeCccCCCcc---eE--eec-cccCcEEEEEe----cCC-eEEEeecCCcEEEEEccCCcccccC---
Q 023772 117 VVSAGYDQSLRAWDCRSHSTEP---IQ--IID-SFQDSVMSVCL----TKT-EIIGGSVDGTVRTFDIRVGRELSDD--- 182 (277)
Q Consensus 117 l~s~~~d~~i~iwd~~~~~~~~---~~--~~~-~~~~~~~~~~~----~~~-~~~~g~~d~~i~i~d~~~~~~~~~~--- 182 (277)
+|.++.||.|++.++....... .+ +.. ...+.+..+.. ... .++.+..-+.|..||+++.......
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999986421111 11 111 11222333321 122 4677777888999999976543321
Q ss_pred -CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec-cccceeeeeeEe-cCCCceE-Eeec-CCCeEEEEEC
Q 023772 183 -LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG-HICKSFKTDCCL-TNSDAHV-TGGS-EDGYIYFWDL 257 (277)
Q Consensus 183 -~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~l-~sgs-~d~~i~iwd~ 257 (277)
..+.|++++.+|.++++++|...|.+-+||++-+.++..+.. +........+++ .+.+... ++|+ ..+.|-+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 235799999999999999999999999999998888876542 222223333333 3444444 4455 6888999999
Q ss_pred cCccceeeeccC
Q 023772 258 VDASVVAKFKAH 269 (277)
Q Consensus 258 ~~~~~~~~~~~h 269 (277)
.+|.+...+-.-
T Consensus 1273 ~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1273 ETGLRQTVLWAS 1284 (1431)
T ss_pred ccCcceEEEEcC
Confidence 999877777644
No 205
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=9.3e-15 Score=111.68 Aligned_cols=194 Identities=18% Similarity=0.224 Sum_probs=146.0
Q ss_pred eccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEcCCCCe---eEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 023772 15 KGHEGAVLAARFNG-DGNYCLSCGKDRTIRLWNPHRGI---HIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDV 89 (277)
Q Consensus 15 ~~H~~~V~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~ 89 (277)
..|.+|+++..|+. +.++|.++|-|-++.|||++++. ....+-+|.++|..++|...+ +.+++.|.||+|++||+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL 226 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL 226 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence 35668899999997 67899999999999999999863 356788999999999999855 57899999999999999
Q ss_pred CCCce---eEEeecccCceeEEEEecCC-CEEEEEeCC-CcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEE
Q 023772 90 STGRV---IRKFRGHESEVNAVKFNEYS-SVVVSAGYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIG 161 (277)
Q Consensus 90 ~~~~~---~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 161 (277)
...+. +..=..-..+...++|+++. ++++|-..| ..|.+-|+|.+ ..++..+..|+..|..+.+.| ..+.+
T Consensus 227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-CTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-CcceehhhcCcccccceEecCCCCceeee
Confidence 86543 22222224567778888754 456654443 56899999875 346777889999999988865 45999
Q ss_pred eecCCcEEEEEccCCcc--c-----ccCCCCCeeEEEEeC-CCCEEEEEecCCeEEE
Q 023772 162 GSVDGTVRTFDIRVGRE--L-----SDDLGQPVNCISMSN-DGNCILASCLDSTLRL 210 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~--~-----~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~ 210 (277)
++.|....+||+.+... . ....++.|+.+.|++ ...+|+.+.. +.+.+
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99999999999975432 1 112457899999996 4677777654 34443
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.7e-14 Score=111.59 Aligned_cols=204 Identities=12% Similarity=0.183 Sum_probs=158.9
Q ss_pred EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
+..-..+|++.+|+++...++.+-....|.||..... +..+++..|...|+.++|.|..+.|++|+.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3334579999999999999999999999999988755 4678899999999999999999999999999999999984
Q ss_pred -cCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEEccCCccc------ccCCCCCeeEEEEeCCCCEEEEEe
Q 023772 133 -SHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGREL------SDDLGQPVNCISMSNDGNCILASC 203 (277)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~ 203 (277)
...-++...+..+...+..+.++|+ .+++|+..+.|.+|=++..... .......|.+++|+|++-.|++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3333444455566677777777764 5999999999999887765433 334456799999999999999999
Q ss_pred cCCeEEEEECCC------------------CceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772 204 LDSTLRLLDRST------------------GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 204 ~d~~i~~wd~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~ 261 (277)
.|+..|+|...- |++..++.. .....-...|+|.|..|+-.+.|..+.+=|.....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~--~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS--SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc--CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 999999987421 122222221 12344556789999999999999999998876654
No 207
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=5.6e-15 Score=121.46 Aligned_cols=206 Identities=14% Similarity=0.211 Sum_probs=154.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK 109 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~ 109 (277)
.+.++-+++||.+.|-+ +.++.-+...+|.+.+.+-.|+|+|.-|+|++.||.||+|. .+|-+..++.....+|.+++
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 45778889999999987 45677778899999999999999999999999999999997 45555555666788999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCcccc-cCCCCC
Q 023772 110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELS-DDLGQP 186 (277)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~-~~~~~~ 186 (277)
|.|+.+.++-|.. +.+.|=.+..+ ..+.....|.+-+.++.+++.. +++|+.|-..++||-.....+. ..+..+
T Consensus 153 W~p~S~~vl~c~g-~h~~IKpL~~n--~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ 229 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG-GHISIKPLAAN--SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYA 229 (737)
T ss_pred ECCCCCceEEecC-CeEEEeecccc--cceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccc
Confidence 9999877666544 34555555432 2344567788899999998654 8899999999999965333222 246789
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
|++++|.|+ ..++.+|.. ++|+=..+.| .+...++|+||.-++.|...|.+.+=
T Consensus 230 ITSva~npd-~~~~v~S~n-t~R~~~p~~G-------------SifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 230 ITSVAFNPE-KDYLLWSYN-TARFSSPRVG-------------SIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeeeccc-cceeeeeee-eeeecCCCcc-------------ceEEEEEcCCCceeeccccCceEEEe
Confidence 999999999 556666543 4552212211 23445689999999999988887653
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.5e-14 Score=117.66 Aligned_cols=240 Identities=19% Similarity=0.294 Sum_probs=174.5
Q ss_pred ccCCcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeE----------------------------EEEeccC------
Q 023772 16 GHEGAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHI----------------------------KTYKSHG------ 60 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~----------------------------~~~~~h~------ 60 (277)
.|...-+.+..+|||+||+ ||-.-..|++||+..-... ++++-|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 6888899999999999877 6788899999997642211 0111111
Q ss_pred -----ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 61 -----REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 61 -----~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
.....++++.-+.-|+.++....|.=++++.|+-+..|.-....++.+..++-..+|++|+.||.|..||.+...
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 123344454444456667777789999999999888888888999999999999999999999999999998643
Q ss_pred CcceEe----ecccc-----CcEEEEEecCC--eEEEeecCCcEEEEEccCCccccc-CC--CCCeeEEEEeCC--CCEE
Q 023772 136 TEPIQI----IDSFQ-----DSVMSVCLTKT--EIIGGSVDGTVRTFDIRVGRELSD-DL--GQPVNCISMSND--GNCI 199 (277)
Q Consensus 136 ~~~~~~----~~~~~-----~~~~~~~~~~~--~~~~g~~d~~i~i~d~~~~~~~~~-~~--~~~v~~~~~s~~--~~~l 199 (277)
.....- +..++ ..+.++.++.+ .+++|+.+|.+.|||++..+++.. .+ .-+|..+.|.+. ++.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v 288 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKV 288 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceE
Confidence 221111 11222 23778888654 488999999999999998876543 23 458899999775 3334
Q ss_pred EEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 200 LASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 200 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+ +.....++|||-.+|+....+... .-..+.|+-|+..++.+|-++..+..|=+..
T Consensus 289 ~-S~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 289 V-SMDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred E-ecchHHhhhcccccCCceeecccc---CCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 4 445668999999999887665432 2245677889999999998888888777665
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=5.3e-15 Score=111.54 Aligned_cols=221 Identities=18% Similarity=0.178 Sum_probs=154.7
Q ss_pred eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
+...++.|.+.|+++.|..+ .+|++|...|.|++|++.+.+....++ .|+..|+.+...|+ ..+.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQAN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 45567789999999999866 469999999999999999988888888 56788999998887 5677889999999999
Q ss_pred CccCCC----------------------cce-Eee--c--------------------------cccCcEEEEEec---C
Q 023772 131 CRSHST----------------------EPI-QII--D--------------------------SFQDSVMSVCLT---K 156 (277)
Q Consensus 131 ~~~~~~----------------------~~~-~~~--~--------------------------~~~~~~~~~~~~---~ 156 (277)
+..... +.. +.. . ...+.+...... .
T Consensus 84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 753110 000 000 0 001112222211 1
Q ss_pred C--eEEEeecCCcEEEEEccCCccc----------c--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC--CceE-
Q 023772 157 T--EIIGGSVDGTVRTFDIRVGREL----------S--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST--GELL- 219 (277)
Q Consensus 157 ~--~~~~g~~d~~i~i~d~~~~~~~----------~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~--~~~~- 219 (277)
. .++.|-.+|.+.+||+.++..+ . ..+.++|.++.+.+.-..=++|+.+..+..|++.. +.+.
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 1 2567788899999999886321 1 13467899999987544446778888888888743 3221
Q ss_pred -EEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 220 -QEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 220 -~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
.++.-.. . -.....+-||++.+|+++.|+.||+|+.++...+..++.|++.|..+
T Consensus 244 ~~e~~lkn-p-Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 244 RKEITLKN-P-GVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred cceEEecC-C-CccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 1121111 1 11223456899999999999999999999999999999999988765
No 210
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=5.7e-14 Score=111.61 Aligned_cols=252 Identities=10% Similarity=0.134 Sum_probs=175.6
Q ss_pred CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEEEEEeCC
Q 023772 4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKLISCGGD 81 (277)
Q Consensus 4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~d 81 (277)
+.+|.+....-..|...|.|+.|+.....+++|+.+++|...|+++.+.+..+... .+.|..+..+|..+.|++.+.+
T Consensus 91 ~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 91 RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence 33444444333457789999999999999999999999999999998877777532 3589999999999999999999
Q ss_pred CcEEEEECCCCc-eeEE--eecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceE--eeccccCcE---EE-
Q 023772 82 RQIFYWDVSTGR-VIRK--FRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQ--IIDSFQDSV---MS- 151 (277)
Q Consensus 82 ~~v~~wd~~~~~-~~~~--~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~~~~---~~- 151 (277)
+.|.+||..... .+.- ..........+.|+|. ..+|++.+..+-+.+||.+.+.....+ ...+.+... ..
T Consensus 171 ~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~ 250 (609)
T KOG4227|consen 171 KLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGS 250 (609)
T ss_pred ceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhhe
Confidence 999999987544 2222 2223445677888886 457888888899999999865322111 011112211 22
Q ss_pred -EEecCCeEEEeecCCcEEEEEccCCcccccCCC---------CCeeEEEEeCCCCEEEEEecCCeEEEEECCCC-----
Q 023772 152 -VCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG---------QPVNCISMSNDGNCILASCLDSTLRLLDRSTG----- 216 (277)
Q Consensus 152 -~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~----- 216 (277)
+..+++++++--....-.+||+-+.+.+..... ..+.+++|-.+-. +++|+.+-.|++|.+...
T Consensus 251 ~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G 329 (609)
T KOG4227|consen 251 LWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYG 329 (609)
T ss_pred eeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccC
Confidence 233456677666666777888877654332211 2467788876654 899999999999986321
Q ss_pred ------------------ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 217 ------------------ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 217 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+....++||. .+...+-|+|...+|++.+..+.+++|.-.
T Consensus 330 ~~~IG~~~~~~~~~~~i~~~~~VLrGHR--Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 330 FTQIGHDEEEMPSEIFIEKELTVLRGHR--SVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ccccCcchhhCchhheecceeEEEeccc--ccccceeecCCcceEeccchhhheeccccc
Confidence 1234456663 344556688888899998999999999743
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=2.2e-13 Score=116.21 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=133.9
Q ss_pred ccceeeccCCcEEEEEEeCCCCEEEEEe---CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCC--c
Q 023772 10 EANVLKGHEGAVLAARFNGDGNYCLSCG---KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDR--Q 83 (277)
Q Consensus 10 ~~~~l~~H~~~V~~~~~~~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~--~ 83 (277)
....+..+...+...+|+|||+.|+..+ .+..+.+|++.+++..... ...+.+....|+|++++|+.. +.++ .
T Consensus 190 ~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~~~~~~~~SPDG~~La~~~~~~g~~~ 268 (429)
T PRK03629 190 NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLN 268 (429)
T ss_pred CCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence 3444566777899999999999988654 3457899999887543322 223345578999999988754 4444 5
Q ss_pred EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC-CcEEEE--eCccCCCcceEeeccccCcEEEEEecCCeEE
Q 023772 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD-QSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLTKTEII 160 (277)
Q Consensus 84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d-~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (277)
|.+||+++++..+ +..+...+....|+|+++.|+..+.+ +...+| |+.......+ ...........+.+++..++
T Consensus 269 I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 269 LYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEE
Confidence 8899998877543 44445567789999999988776653 455555 5443322111 11111111233344455665
Q ss_pred EeecC---CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCe---EEEEECCCCceEEEEeccc
Q 023772 161 GGSVD---GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDST---LRLLDRSTGELLQEYKGHI 226 (277)
Q Consensus 161 ~g~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~---i~~wd~~~~~~~~~~~~~~ 226 (277)
..+.+ ..|.+||+.+++..............|+|||++|+.++.++. ++++++. +...+.+.++.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~ 417 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD 417 (429)
T ss_pred EEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC
Confidence 54433 358889987765322111222345789999999999888774 6777774 55555565543
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.9e-15 Score=124.04 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=105.5
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
--+++|+..+|++||++||+.|.||.+||+|..+.+++...+.--+...|++|+||+++|++|+.|.-|.||.++..+++
T Consensus 288 ~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 288 IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 34568899999999999999999999999999888777777767789999999999999999999999999999999999
Q ss_pred EEeecccCceeEEEEecC------------------------------------------------CCEEEEEeCCCcEE
Q 023772 96 RKFRGHESEVNAVKFNEY------------------------------------------------SSVVVSAGYDQSLR 127 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~------------------------------------------------~~~l~s~~~d~~i~ 127 (277)
..-++|++.|+.++|.|- .-+|.+.+.|.++.
T Consensus 368 ARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlc 447 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLC 447 (636)
T ss_pred EeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEE
Confidence 999999999999999820 02578889999999
Q ss_pred EEeCccC
Q 023772 128 AWDCRSH 134 (277)
Q Consensus 128 iwd~~~~ 134 (277)
+||+...
T Consensus 448 LWDlteD 454 (636)
T KOG2394|consen 448 LWDLTED 454 (636)
T ss_pred EEecchh
Confidence 9998643
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=5e-13 Score=114.55 Aligned_cols=205 Identities=12% Similarity=0.049 Sum_probs=135.7
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCc-
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGK---DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQ- 83 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~- 83 (277)
.....+..|.+.+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+....|+|+++.|+ +.+.++.
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 344557788899999999999999887653 468999999887653 4445566788899999999875 5555655
Q ss_pred -EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcE--EEEEecCC
Q 023772 84 -IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKT 157 (277)
Q Consensus 84 -v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 157 (277)
|.+||+++++.. .+..+........|+|+++.++..+. +| .|.++|+.......+. ...... ..+.++++
T Consensus 271 ~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---~~~~~~~~~~~SpdG~ 346 (435)
T PRK05137 271 DIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS---FGGGRYSTPVWSPRGD 346 (435)
T ss_pred eEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee---cCCCcccCeEECCCCC
Confidence 777798877653 45556666677899999998877663 33 5777786544322221 112222 23444555
Q ss_pred eEEEeecC---CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC------CeEEEEECCCCce
Q 023772 158 EIIGGSVD---GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD------STLRLLDRSTGEL 218 (277)
Q Consensus 158 ~~~~g~~d---~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~~wd~~~~~~ 218 (277)
.++....+ ..|.+||+..+..........+....|+|+|++|+..+.+ ..++++|+..++.
T Consensus 347 ~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 347 LIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 66654433 3577788754432222222346678999999988765543 2577888865543
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=1.4e-13 Score=108.39 Aligned_cols=119 Identities=13% Similarity=0.200 Sum_probs=104.0
Q ss_pred ccCCcEEEEEEeCCCCEEEE--EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc-EEEEECCCC
Q 023772 16 GHEGAVLAARFNGDGNYCLS--CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ-IFYWDVSTG 92 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~-v~~wd~~~~ 92 (277)
-|...+.++.+++.+.+++- .-.-|.|.+||..+-+...++++|.+++-+++|+++|.+|+|+|..|+ |+|+.+.+|
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 35666777777777788883 334599999999999999999999999999999999999999999998 699999999
Q ss_pred ceeEEeeccc--CceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772 93 RVIRKFRGHE--SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134 (277)
Q Consensus 93 ~~~~~~~~h~--~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~ 134 (277)
+.+.+|+... ..|.+++|+++..+|++.|..++|.+|.+...
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9999998653 46789999999999999999999999998654
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=5.8e-15 Score=119.32 Aligned_cols=223 Identities=18% Similarity=0.245 Sum_probs=165.6
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec--------------------------------------cCccE
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------------------------------------HGREV 63 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------------------------------h~~~v 63 (277)
..+.|+.+|+.|+-|+.-|.|..+|..++.+...+.. ....|
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~v 212 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIRV 212 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCch
Confidence 4688899999999999999999999887665443320 12456
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID 143 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 143 (277)
..+.|.|-.-+|++++..|.++.-|+.+|+.+..+..-.+++..|.-+|-...+-+|..+|+|.+|.+... ++...+.
T Consensus 213 ~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk--ePLvKiL 290 (545)
T KOG1272|consen 213 ARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK--EPLVKIL 290 (545)
T ss_pred hhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc--chHHHHH
Confidence 77788898888999999999999999999999999888889999999999999999999999999998754 4455555
Q ss_pred cccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEEC-CC--Cc
Q 023772 144 SFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLDR-ST--GE 217 (277)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~-~~--~~ 217 (277)
.|..++.++.++ +.++++.+.|+.++|||+|...++... ...+...++||..| +++.+....+.+|-- .. +.
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~ 368 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGH 368 (545)
T ss_pred hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeehhhhcCCCC
Confidence 677777777665 567999999999999999987765443 24677888998776 445555667999953 22 23
Q ss_pred eEEEEeccccceeeeeeEecCCCceEEeecC
Q 023772 218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSE 248 (277)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 248 (277)
...-|..|.....+...-|-|-+..|-.|..
T Consensus 369 ~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~ 399 (545)
T KOG1272|consen 369 GETPYMNHRCGGPVEDLRFCPYEDVLGIGHA 399 (545)
T ss_pred CCcchhhhccCcccccceeccHHHeeecccc
Confidence 3344555544433333334443444444433
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=1.5e-13 Score=108.96 Aligned_cols=243 Identities=16% Similarity=0.212 Sum_probs=167.3
Q ss_pred CCcEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCeeEEE------EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 18 EGAVLAARFNGDG--NYCLSCGKDRTIRLWNPHRGIHIKT------YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 18 ~~~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~~~~~~~------~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
...|..++|..++ +.+..++.|..+.........+... .....++|..++.. +..|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 4457777787544 5677777888888887665544333 23334566666554 467899999999999998
Q ss_pred CCCc----eeEEeecccCceeEEEEecC-CCEEEEEeCC--CcEEEEeCccCCCcceEeecccc-------CcE--EEEE
Q 023772 90 STGR----VIRKFRGHESEVNAVKFNEY-SSVVVSAGYD--QSLRAWDCRSHSTEPIQIIDSFQ-------DSV--MSVC 153 (277)
Q Consensus 90 ~~~~----~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~~~~-------~~~--~~~~ 153 (277)
+.+. ....+..+ .++..+.-.+. ...+++||.. ..+++||+.+. .++......+ -++ ..+.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeeeccce
Confidence 8432 22233333 34444544444 3466779988 88999998753 2222111111 111 1222
Q ss_pred e---c-CCeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE-Eecc
Q 023772 154 L---T-KTEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE-YKGH 225 (277)
Q Consensus 154 ~---~-~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~ 225 (277)
| + ...+++++.-+.+|+||.+.++.... ....++.++...|.++++++|-.-+.+..||.+.++.... |.+-
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 2 1 34599999999999999998765432 3457899999999999999999999999999999998876 5555
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
.... ......|...++++++-|+.+||+|+.+.+++++..
T Consensus 290 tGsi--rsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 290 TGSI--RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred cCCc--ceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 4333 334457888999999999999999999977776554
No 217
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.2e-13 Score=114.85 Aligned_cols=211 Identities=13% Similarity=0.136 Sum_probs=135.4
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR-- 82 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~-- 82 (277)
.....+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+...+..|+|++++|+ +.+.++
T Consensus 194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 3345566788889999999999999987643 469999998876533 333344556789999999775 555555
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCc--EEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI 159 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
.|.+||+.+++.. .+..+........|+|+++.++.++. +|. |.++|+.......+. ..........+.++++.+
T Consensus 273 ~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 273 EIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPDGKKI 350 (433)
T ss_pred eEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCCCCEE
Confidence 5999999887753 45555555567899999998877663 455 555565443322221 121111123444556666
Q ss_pred EEeecCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEe
Q 023772 160 IGGSVDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYK 223 (277)
Q Consensus 160 ~~g~~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~ 223 (277)
+..+.++ .|.+||+..++......+.......|+|+|++++..+.+ +.|++++.. +...+.+.
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~ 419 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLV 419 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcc
Confidence 6544332 588999877654322222234456899999988776653 357788885 33444443
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=1.7e-13 Score=108.67 Aligned_cols=203 Identities=17% Similarity=0.302 Sum_probs=149.5
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe----eEEEEeccCccEEEEEEcCCCCEEEE-EeCC--CcEEE
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI----HIKTYKSHGREVRDVHVTADNSKLIS-CGGD--RQIFY 86 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d--~~v~~ 86 (277)
..+-.++|..+... ...|++|-.+|.+++|....+. .+..+..+ ..+..+.-.+....|++ ||.. ..+++
T Consensus 101 ~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lki 177 (412)
T KOG3881|consen 101 VSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKI 177 (412)
T ss_pred cccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceee
Confidence 34445666666544 3478899999999999877432 23334433 45666666676666654 8888 88999
Q ss_pred EECCCCceeEEeec-------ccC--ceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe-
Q 023772 87 WDVSTGRVIRKFRG-------HES--EVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL- 154 (277)
Q Consensus 87 wd~~~~~~~~~~~~-------h~~--~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~- 154 (277)
||+++.+.+.+-+. -.- .++++.|.+. ...|++++.-+.+++||.+.+ ..|+..+.....++.++..
T Consensus 178 wdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~ 256 (412)
T KOG3881|consen 178 WDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLT 256 (412)
T ss_pred eecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCccc-CcceeEeccccCcceeeeec
Confidence 99998866554332 122 3457778877 789999999999999999854 4566666555555555554
Q ss_pred -cCCeEEEeecCCcEEEEEccCCccccc---CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE
Q 023772 155 -TKTEIIGGSVDGTVRTFDIRVGRELSD---DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ 220 (277)
Q Consensus 155 -~~~~~~~g~~d~~i~i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~ 220 (277)
+.+.+++|..-+.+..||++.++.... .....++++-.+|.+.++++++.|+.+||+|.++.+++.
T Consensus 257 p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 257 PSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 556799999999999999999876544 345689999999999999999999999999999866653
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.8e-13 Score=103.84 Aligned_cols=154 Identities=16% Similarity=0.250 Sum_probs=104.9
Q ss_pred EEEEecCCCEEEEEeC----------CCcEEEEeCccCCCcceEeec-cccCcEEEEEecCCe--E--EEeecCCcEEEE
Q 023772 107 AVKFNEYSSVVVSAGY----------DQSLRAWDCRSHSTEPIQIID-SFQDSVMSVCLTKTE--I--IGGSVDGTVRTF 171 (277)
Q Consensus 107 ~i~~~~~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~--~~g~~d~~i~i~ 171 (277)
.+.|+++|+.|+.-.. -+...+|-++.... +...+. ....++..+.++|+. + +.|..++.+.+|
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 3566666655433221 23455565543322 222222 223458888887653 4 445677899999
Q ss_pred EccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec-
Q 023772 172 DIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS- 247 (277)
Q Consensus 172 d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs- 247 (277)
|++ ++.+......+++.+.|+|+|++|++++.+ |.+.+||.++.+.+..+... ....+.++|+|+++++++
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~----~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS----DATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC----cEEEEEEcCCCCEEEEEEe
Confidence 997 444444445688999999999999998754 56999999988888776533 246678999999999875
Q ss_pred -----CCCeEEEEECcCccceeeec
Q 023772 248 -----EDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 248 -----~d~~i~iwd~~~~~~~~~~~ 267 (277)
.|+.++||+.. |+++.+..
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ccceeccccEEEEEec-CeEeEecc
Confidence 38999999985 77766544
No 220
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.59 E-value=1.7e-13 Score=117.63 Aligned_cols=200 Identities=18% Similarity=0.188 Sum_probs=147.0
Q ss_pred eccCCcEEEEEEeCCCCE--EEEEeCCCcEEEEcCCCCee------EEEEe------ccCccEEEEEEcCCC-CEEEEEe
Q 023772 15 KGHEGAVLAARFNGDGNY--CLSCGKDRTIRLWNPHRGIH------IKTYK------SHGREVRDVHVTADN-SKLISCG 79 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~--l~s~s~d~~v~iwd~~~~~~------~~~~~------~h~~~v~~~~~~~~~-~~l~t~s 79 (277)
..|..+|..+.|-.+..- ++|+|.||.|..|++..-.. ..... .-...+++++|.+.. ..++.|+
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 469999999999875544 99999999999998653211 11111 123468899998754 5688899
Q ss_pred CCCcEEEEE---CCCCc-----eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772 80 GDRQIFYWD---VSTGR-----VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS 151 (277)
Q Consensus 80 ~d~~v~~wd---~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (277)
.+|.|..=. ..... ....+..|.++|.++.++|....++..+.|.++++|..... ..+...+......+.+
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~-~~Pl~~~~~~~~~v~~ 446 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI-ASPLLSLDSSPDYVTD 446 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC-CCcchhhhhccceeee
Confidence 999887733 22222 23456678999999999999877666666999999987632 2355556666777888
Q ss_pred EEecCCe---EEEeecCCcEEEEEccCCcccccC----CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 152 VCLTKTE---IIGGSVDGTVRTFDIRVGRELSDD----LGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 152 ~~~~~~~---~~~g~~d~~i~i~d~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
+.+++.. ++++..||.|.+||+.....-+.. .....+.+.|++.|+.|++|...|.+++|++..
T Consensus 447 vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 447 VAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9988765 888999999999999765432211 134567788898999999999999999999964
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=3.9e-12 Score=108.62 Aligned_cols=225 Identities=16% Similarity=0.120 Sum_probs=141.9
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG---GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s---~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
..|.+||..... .+.+..+...+.+..|+|+++.|+..+ .+..+.+||+.+++... +......+....|+|+++.
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCE
Confidence 368888876443 334445667899999999999988654 24579999998875432 2222333456899999998
Q ss_pred EEEE-eCCC--cEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeec-CCcEEEE--EccCCcccc-cCCCCCe
Q 023772 117 VVSA-GYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSV-DGTVRTF--DIRVGRELS-DDLGQPV 187 (277)
Q Consensus 117 l~s~-~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~-d~~i~i~--d~~~~~~~~-~~~~~~v 187 (277)
|+.. +.+| .|.+||+.+.... + +...........++ ++.++..+. ++...+| |+..++... .......
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~--~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR--Q-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE--E-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCc
Confidence 7754 4455 4888898764322 2 22222233344444 455665554 3455555 555443211 1223345
Q ss_pred eEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCe---EEEEECcCcc
Q 023772 188 NCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGY---IYFWDLVDAS 261 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~---i~iwd~~~~~ 261 (277)
....|+|+|++|+..+.+ ..|++||+.+++.. .+.... ......++|||++++.++.++. ++++++ +|+
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~ 408 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGR 408 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCC
Confidence 678899999998876543 35888999887643 333211 1234568999999998877764 677777 577
Q ss_pred ceeeeccCcceeE
Q 023772 262 VVAKFKAHSLVVK 274 (277)
Q Consensus 262 ~~~~~~~h~~~v~ 274 (277)
....+.+|.+.++
T Consensus 409 ~~~~l~~~~~~~~ 421 (429)
T PRK03629 409 FKARLPATDGQVK 421 (429)
T ss_pred CeEECccCCCCcC
Confidence 7788888776543
No 222
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4.6e-15 Score=119.87 Aligned_cols=199 Identities=13% Similarity=0.202 Sum_probs=159.0
Q ss_pred CCccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772 4 SDLPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83 (277)
Q Consensus 4 ~~~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~ 83 (277)
++-..+|..+++.|. .|..+.|-|---+|++++..|-++--|+.+|+.+..+....+.+..++-+|-+..+-+|...|+
T Consensus 196 YD~~GtElHClk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGt 274 (545)
T KOG1272|consen 196 YDNNGTELHCLKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGT 274 (545)
T ss_pred ecCCCcEEeehhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCce
Confidence 344456677777664 5889999999889999999999999999999999999888899999999999999999999999
Q ss_pred EEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772 84 IFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS 163 (277)
Q Consensus 84 v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (277)
|.+|.....+++..+..|.++|.++++.++|.+++|++.|..++|||++... ....... +.+...++++...++..+
T Consensus 275 VSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~t-p~~a~~ls~SqkglLA~~ 351 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYRT-PHPASNLSLSQKGLLALS 351 (545)
T ss_pred EEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc--ccceeec-CCCccccccccccceeee
Confidence 9999999999988899999999999999999999999999999999999754 2222222 345566777788888888
Q ss_pred cCCcEEEEEc-cCCc----c--cccCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 164 VDGTVRTFDI-RVGR----E--LSDDLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 164 ~d~~i~i~d~-~~~~----~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
....+.+|.- -.+. . +....+.+|..+.|.|-...|-.|...|
T Consensus 352 ~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 352 YGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred cCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 8888999952 2211 1 1123456899999998655555555444
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=1.4e-11 Score=102.63 Aligned_cols=251 Identities=13% Similarity=0.106 Sum_probs=150.7
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVSTG 92 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~~ 92 (277)
+....++-..+.|++||++++.++.|+.|.++|+.+++.+++++.. ....++++++++++++++. .++.+.++|.++.
T Consensus 32 i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl 110 (369)
T PF02239_consen 32 IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETL 110 (369)
T ss_dssp EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT-
T ss_pred EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccc
Confidence 3333334445789999999999999999999999999999999864 4678899999999998765 6899999999999
Q ss_pred ceeEEeecc-------cCceeEEEEecCCCEEEEEeCC-CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEe
Q 023772 93 RVIRKFRGH-------ESEVNAVKFNEYSSVVVSAGYD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGG 162 (277)
Q Consensus 93 ~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g 162 (277)
++++.+... ..++.++..++....++..-.| +.|.+-|............. .........+++ .+++++
T Consensus 111 e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 111 EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp -EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEE
T ss_pred cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeec
Confidence 988877543 3467788888887766655555 66766675543222222211 122223333333 344433
Q ss_pred -ecCCcEEEEEccCCcccc--------------------------cC-----------------C-------------CC
Q 023772 163 -SVDGTVRTFDIRVGRELS--------------------------DD-----------------L-------------GQ 185 (277)
Q Consensus 163 -~~d~~i~i~d~~~~~~~~--------------------------~~-----------------~-------------~~ 185 (277)
..++.+-++|..+++... .. . ..
T Consensus 190 ~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 190 ANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp EGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred ccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 334455555554332110 00 0 00
Q ss_pred CeeEEEEeCCCCEEEEE----ecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe--ecCCCeEEEEECcC
Q 023772 186 PVNCISMSNDGNCILAS----CLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG--GSEDGYIYFWDLVD 259 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s--gs~d~~i~iwd~~~ 259 (277)
.-.-+..+|+++++.+. ...++|.++|.++.+.+..+..... ......-|+++|+.+.. ...++.|.+||..+
T Consensus 270 ~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 270 GGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp SS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred CcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence 01234569999999887 4558999999999887777653221 11455678999986554 34455799999999
Q ss_pred ccceeeec
Q 023772 260 ASVVAKFK 267 (277)
Q Consensus 260 ~~~~~~~~ 267 (277)
.+++++++
T Consensus 349 l~~~~~i~ 356 (369)
T PF02239_consen 349 LKEKKRIP 356 (369)
T ss_dssp TEEEEEEE
T ss_pred cEEEEEEE
Confidence 99999988
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=9.7e-13 Score=112.36 Aligned_cols=209 Identities=9% Similarity=0.065 Sum_probs=132.2
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYW 87 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~w 87 (277)
..+..+.+.+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|+++.|+ +.+.++...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4456788899999999999999876643 459999998886543 333345667899999999886 56778776666
Q ss_pred E--CCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEe-eccccCcEEEEEecCCeEEEee
Q 023772 88 D--VSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLTKTEIIGGS 163 (277)
Q Consensus 88 d--~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 163 (277)
. +.++. .+.+..+........|+|+++.++..+. ++...+|.+.......... ..........+.++++.++..+
T Consensus 268 ~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 268 TVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEE
Confidence 5 44444 4455555555667889999998776554 5677777654222111111 1211111233445566666555
Q ss_pred cCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEe
Q 023772 164 VDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYK 223 (277)
Q Consensus 164 ~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~ 223 (277)
.++ .|.+||+..++..............|+|+|++|+.++.++ .+++.+. .+...+.+.
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~ 411 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLS 411 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEee
Confidence 443 5899999876533222222345679999999988877554 3555566 344444443
No 225
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.58 E-value=9.8e-13 Score=115.86 Aligned_cols=119 Identities=27% Similarity=0.449 Sum_probs=105.8
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
..+.||++.+..+.++.||++++|+|.|+++|+|++.+.+... +.-+|+..|+.+.|.|+ +|+|++.|.+.++|+.+
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 3589999999999999999999999999999999999987665 66689999999999988 99999999999999764
Q ss_pred CCceeEEeeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772 91 TGRVIRKFRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133 (277)
Q Consensus 91 ~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~ 133 (277)
+.....+..|. ..++.++..+.....+|++.|+.+++|++..
T Consensus 247 -~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 247 -GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred -cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 44455788884 5789999999999999999999999999753
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.6e-12 Score=108.86 Aligned_cols=225 Identities=11% Similarity=0.104 Sum_probs=139.3
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
..|.++|.. +...+.+..+...+.+..|+|+++.|+..+.+ ..|.+||+.+++... +......+....|+|+++.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 456777763 44444555677889999999999999877643 359999999887543 3333445567899999987
Q ss_pred EE-EEeCCCcEEEEeCccCCCcceEeeccccCcEE--EEEecCCeEEEee-cCCcEEEEEcc--CCcccc-cCCCCCeeE
Q 023772 117 VV-SAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVM--SVCLTKTEIIGGS-VDGTVRTFDIR--VGRELS-DDLGQPVNC 189 (277)
Q Consensus 117 l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~-~d~~i~i~d~~--~~~~~~-~~~~~~v~~ 189 (277)
++ +.+.++...+|.+...... ...+..+..... .+..++..++..+ .++...+|.+. .+.... ...+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~ 332 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTS 332 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCc
Confidence 76 5677888777765432222 222222222222 3344455565444 34666777653 332111 112223345
Q ss_pred EEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC---eEEEEECcCccce
Q 023772 190 ISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG---YIYFWDLVDASVV 263 (277)
Q Consensus 190 ~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~iwd~~~~~~~ 263 (277)
..|+|+|++|+..+.++ .|++||+.+++... +.... ......++|+++.|+..+.++ .+++.+. ++...
T Consensus 333 ~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~ 407 (427)
T PRK02889 333 PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIK 407 (427)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCce
Confidence 78999999998777654 69999998876543 33221 123457899999888765433 3666677 46667
Q ss_pred eeeccCcce
Q 023772 264 AKFKAHSLV 272 (277)
Q Consensus 264 ~~~~~h~~~ 272 (277)
..+..+.+.
T Consensus 408 ~~l~~~~g~ 416 (427)
T PRK02889 408 QRLSVQGGD 416 (427)
T ss_pred EEeecCCCC
Confidence 777655443
No 227
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=1.8e-12 Score=98.38 Aligned_cols=153 Identities=12% Similarity=0.192 Sum_probs=103.3
Q ss_pred EEEEEcCCCCEEEEEeC---C-------CcEEEEECCC-CceeEEeec-ccCceeEEEEecCCCEEEEE--eCCCcEEEE
Q 023772 64 RDVHVTADNSKLISCGG---D-------RQIFYWDVST-GRVIRKFRG-HESEVNAVKFNEYSSVVVSA--GYDQSLRAW 129 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~---d-------~~v~~wd~~~-~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~--~~d~~i~iw 129 (277)
-.+.|+++|++|+.-.. | +...+|-++. +..+..+.- ...+|.+++|+|+++.++.. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35678888877654322 1 2345555532 233444432 34579999999999986544 467899999
Q ss_pred eCccCCCcceEeeccccCcEEEEEec--CCeEEEeec---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec
Q 023772 130 DCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSV---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL 204 (277)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 204 (277)
|++ .+.+..+.. .....+.++ ++.++.++. .|.+.+||.+..+.+.......+..++|+|+|++|+++..
T Consensus 89 d~~---~~~i~~~~~--~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK---GKKIFSFGT--QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc---ccEeEeecC--CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEe
Confidence 986 334444443 333445555 456777664 4679999999877776655556889999999999999864
Q ss_pred ------CCeEEEEECCCCceEEEE
Q 023772 205 ------DSTLRLLDRSTGELLQEY 222 (277)
Q Consensus 205 ------d~~i~~wd~~~~~~~~~~ 222 (277)
|..++||+.. |+++...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7889999985 6666544
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=5.7e-12 Score=107.96 Aligned_cols=222 Identities=14% Similarity=0.071 Sum_probs=140.7
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
..|.+||... ...+.+..+...+.+..|+|+++.|+..+.+ ..|.+||+.+++... +...........|+|+++.
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 4688999754 3445565677789999999999999887743 469999998876532 3333444557899999987
Q ss_pred EE-EEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCCc--EEEEEccCCcccc-cCCCCCe
Q 023772 117 VV-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDGT--VRTFDIRVGRELS-DDLGQPV 187 (277)
Q Consensus 117 l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~~--i~i~d~~~~~~~~-~~~~~~v 187 (277)
++ +.+.+| .|.+||+.+.... .+..+........+ ++..++..+ .++. |.++|+..++... ...+...
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~---~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLT---RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCc
Confidence 64 555555 5888998765322 22222222223344 445566554 3444 5556665543221 1222334
Q ss_pred eEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC---CCeEEEEECcCcc
Q 023772 188 NCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE---DGYIYFWDLVDAS 261 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---d~~i~iwd~~~~~ 261 (277)
...+|+|+|++|+..+.++ .|++||+.+++.. .+.... ......++|+|++++..+. .+.|++++.. +.
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~ 413 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GR 413 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CC
Confidence 4689999999988765443 6999999887654 333211 1234578999998776554 3468888885 55
Q ss_pred ceeeeccCcc
Q 023772 262 VVAKFKAHSL 271 (277)
Q Consensus 262 ~~~~~~~h~~ 271 (277)
....+..+.+
T Consensus 414 ~~~~l~~~~g 423 (433)
T PRK04922 414 VRQRLVSADG 423 (433)
T ss_pred ceEEcccCCC
Confidence 6666665543
No 229
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=5.3e-13 Score=109.97 Aligned_cols=236 Identities=19% Similarity=0.207 Sum_probs=147.0
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee------EEEEeccCccEEEE---EEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH------IKTYKSHGREVRDV---HVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~v~~~---~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
+....++-.|++|+- -....+.+|+...+.. .+.+++.+..+.+. .-.+++--++.|-.-|.+.+.|...
T Consensus 126 ~~~~~~~~~gd~lcF-nvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCF-NVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEE-ecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 444555556666553 2234677776552211 12233322222222 1124455577777788888888765
Q ss_pred CceeEEee----cccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeec--
Q 023772 92 GRVIRKFR----GHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSV-- 164 (277)
Q Consensus 92 ~~~~~~~~----~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-- 164 (277)
.+..+-|. -.+..|+++.|-|.+ ..++.+-.+|.+.+||..... ....+.......+..+.....
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~--------~~t~p~~~~~k~~~~f~i~t~ks 276 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC--------GATAPSYQALKDGDQFAILTSKS 276 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc--------cCCCCcccccCCCCeeEEeeeec
Confidence 33222111 134789999998754 466667789999999863211 111111111222222221111
Q ss_pred ---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCc
Q 023772 165 ---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDA 241 (277)
Q Consensus 165 ---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (277)
+.-+.-|-+ ....|+..+|+|||++|++.+.||.+||||+.+.+++..++.- ..-.+.+|+||||+
T Consensus 277 k~~rNPv~~w~~---------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 277 KKTRNPVARWHI---------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGK 345 (636)
T ss_pred cccCCccceeEe---------ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCcc
Confidence 111222222 2347899999999999999999999999999987776543321 11236678999999
Q ss_pred eEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
||++|++|--|-+|.+.+.+++..-++|...|+.+
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~V 380 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVV 380 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeE
Confidence 99999999999999999999999999999888754
No 230
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=3.6e-14 Score=117.53 Aligned_cols=215 Identities=16% Similarity=0.288 Sum_probs=157.0
Q ss_pred EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEeecccCceeEEEEecCCCEEEEEeCCCc
Q 023772 53 IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-------GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS 125 (277)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~ 125 (277)
+..|.+|...|+.++-..+.+-+++++.|++||+|.++. ..+..++..|+.+|.++.|..+.+.+++ -||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 456778999999998888888999999999999999853 3467889999999999999999888876 5889
Q ss_pred EEEEeCccCCCcceEe---eccccCcEEEEEe-cCCeE-EEeecCCcEEEEEccCCcc---ccc----CCCCCeeEEEEe
Q 023772 126 LRAWDCRSHSTEPIQI---IDSFQDSVMSVCL-TKTEI-IGGSVDGTVRTFDIRVGRE---LSD----DLGQPVNCISMS 193 (277)
Q Consensus 126 i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~-~~g~~d~~i~i~d~~~~~~---~~~----~~~~~v~~~~~s 193 (277)
|.+||.-.+....... .++....+..+.- +...+ +.++...+++++|-|.++- +.. ....-++++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999975432211000 1112223333322 12223 3347889999999987642 211 123568999999
Q ss_pred CCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEE-EECcCccceeeeccCcce
Q 023772 194 NDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYF-WDLVDASVVAKFKAHSLV 272 (277)
Q Consensus 194 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~i-wd~~~~~~~~~~~~h~~~ 272 (277)
+.|++++++-..|+|.+.|.++|+.+..++..++.-... ..|.+..++....|..+.+ |...+|....+.+..+.+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql---aapsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL---AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh---cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 999999999999999999999999998887765443222 2455667787778999998 998888887777755444
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.3e-11 Score=102.69 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=138.4
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
..|.+||... ...+.+..|...+.+..|+|++++|+..+. +..|.+||+.+++.. .+..+...+....|+|+++.
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 4788888744 445566677889999999999999887764 468999999888653 34456667778899999987
Q ss_pred EE-EEeCCCc--EEEEeCccCCCcceEeeccccCcE--EEEEecCCeEEEeec-CC--cEEEEEccCCccccc-CCCCCe
Q 023772 117 VV-SAGYDQS--LRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKTEIIGGSV-DG--TVRTFDIRVGRELSD-DLGQPV 187 (277)
Q Consensus 117 l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-d~--~i~i~d~~~~~~~~~-~~~~~v 187 (277)
++ +.+.++. |.+||+..... ..+..+.... ..+.+++..++..+. ++ .|.++|+..+..... .....+
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~ 336 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRY 336 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcc
Confidence 64 5566665 66667765432 2222222222 233444555665543 33 577778765432211 123345
Q ss_pred eEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC------CeEEEEECc
Q 023772 188 NCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED------GYIYFWDLV 258 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d------~~i~iwd~~ 258 (277)
....|+|+|++|+..+.+ ..|.+||+..+.. +.+.... ......++|||++|+..+.+ ..++++|+.
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~---~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF---LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC---CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 668899999999876643 3688899865443 3333211 12345689999987754332 368888987
Q ss_pred Cccceeeec
Q 023772 259 DASVVAKFK 267 (277)
Q Consensus 259 ~~~~~~~~~ 267 (277)
.+.. ..+.
T Consensus 413 g~~~-~~l~ 420 (435)
T PRK05137 413 GRNE-REVP 420 (435)
T ss_pred CCce-EEcc
Confidence 6544 3443
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=4.4e-11 Score=94.46 Aligned_cols=243 Identities=16% Similarity=0.252 Sum_probs=149.8
Q ss_pred cccceeec-cCCcEEEEEEeCCC-CEEEEEeCCCcEEEEcCCC----Cee----------EEEEeccCccEEEEEEcCCC
Q 023772 9 TEANVLKG-HEGAVLAARFNGDG-NYCLSCGKDRTIRLWNPHR----GIH----------IKTYKSHGREVRDVHVTADN 72 (277)
Q Consensus 9 ~~~~~l~~-H~~~V~~~~~~~~~-~~l~s~s~d~~v~iwd~~~----~~~----------~~~~~~h~~~v~~~~~~~~~ 72 (277)
+.+-.|+. -...|+|++|-|.+ +.|+.|+. +-|.+|.... ++. +....+| .+|+++.|.+++
T Consensus 130 t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg 207 (445)
T KOG2139|consen 130 TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG 207 (445)
T ss_pred CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC
Confidence 33334443 45679999999965 56666665 6789996421 111 1223445 689999999999
Q ss_pred CEEEEEeC-CCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC-CCcceEeeccccCcEE
Q 023772 73 SKLISCGG-DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH-STEPIQIIDSFQDSVM 150 (277)
Q Consensus 73 ~~l~t~s~-d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~ 150 (277)
..+++++. |..|.+||+.++..+.-.......+.-+.|+||+.+++.+.-|+..++|+.... ..++.. . .++.+.
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~-l--gsgrvq 284 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWI-L--GSGRVQ 284 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceeccee-c--cCCcee
Confidence 99999986 578999999998766544344667888999999999999999999999965432 222211 1 122555
Q ss_pred EEEecCCe---EEEeecCCcEEEEEccCCc---------------------cc-----ccCCCCCeeEEEEeCCCCEEEE
Q 023772 151 SVCLTKTE---IIGGSVDGTVRTFDIRVGR---------------------EL-----SDDLGQPVNCISMSNDGNCILA 201 (277)
Q Consensus 151 ~~~~~~~~---~~~g~~d~~i~i~d~~~~~---------------------~~-----~~~~~~~v~~~~~s~~~~~l~~ 201 (277)
.-.+++.. +++.+ |.-++|.+.-.. ++ ......++.+++|+|.|.+|++
T Consensus 285 tacWspcGsfLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 285 TACWSPCGSFLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred eeeecCCCCEEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEE
Confidence 55555433 22222 222222221000 00 0112457899999999999998
Q ss_pred EecCCe--------EEEEECCCCceEE-EEeccccceeeeeeEec---CCCceEEeecCCCeEEEEECc
Q 023772 202 SCLDST--------LRLLDRSTGELLQ-EYKGHICKSFKTDCCLT---NSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 202 ~~~d~~--------i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~l~sgs~d~~i~iwd~~ 258 (277)
.-..+. |.+||.+..-.+. .+.+..........+|+ .++.+|..+=+.|.+.-|++.
T Consensus 363 ~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 363 IFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 765443 5678876433222 22233222222233444 356677777677778777653
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=2.2e-12 Score=113.70 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=148.5
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
-|....+..+...++.+..+..+-+||...+............ ..-+-++++.-++++|+.-+.|.+|+....+.-
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 3444555566778888888999999998876655554432211 112234566678999999999999998743333
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 175 (277)
..+.+|.+.+.++.++.++.+++++|.|+++++|++.+..... ...-+|...+..+.+.++.+++++.|.+.++|+..-
T Consensus 169 ~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 169 IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG 247 (967)
T ss_pred ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccceeEEeccceEEEEEeccc
Confidence 3578999999999999999999999999999999998765433 234467888999999999999999999999996542
Q ss_pred Cc--ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772 176 GR--ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 176 ~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~ 214 (277)
.+ .+.......+..++.+++...++|++.|+.+++||+.
T Consensus 248 ~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 248 TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 21 2222334578899999999999999999999999974
No 234
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2.4e-11 Score=95.93 Aligned_cols=183 Identities=16% Similarity=0.207 Sum_probs=130.4
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEe-ccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYK-SHGREVRDVHVTADNSKLISCGGDRQIFYWDVST----G 92 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~----~ 92 (277)
+-.+..++|++--.-++.+..|-+||+||-... +...++ .-+..|++++|-|.+..-++.+..+-|.+|.... +
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc
Confidence 345677899987667789999999999996653 222332 2356899999999887777777788899998742 1
Q ss_pred ce----------eEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE
Q 023772 93 RV----------IRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG 161 (277)
Q Consensus 93 ~~----------~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (277)
.. +....+| .+|++|.|++|+..+++++. |..|.+||..++...++.-...........+++++.+..
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 11 1122344 79999999999999999885 678999999887766554222222223445555667999
Q ss_pred eecCCcEEEEEccCC---cccccCCCCCeeEEEEeCCCCEEEEEe
Q 023772 162 GSVDGTVRTFDIRVG---RELSDDLGQPVNCISMSNDGNCILASC 203 (277)
Q Consensus 162 g~~d~~i~i~d~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~ 203 (277)
++.|+..++|+.... +.... ..+.|...+|+|+|++|+-++
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEE
Confidence 999999999965432 22222 234899999999999876554
No 235
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=2.8e-11 Score=93.90 Aligned_cols=172 Identities=16% Similarity=0.281 Sum_probs=126.1
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEeecc--cCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVST-GRVIRKFRGH--ESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~-~~~~~~~~~h--~~~v~~i~~~~~~~~ 116 (277)
..|-|||-...+++.++.- ..+|.++.+.++ +|+.. .+++|++|...+ -+.++.+..- ...+.++.-.....+
T Consensus 75 NkviIWDD~k~~~i~el~f-~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-NSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEEe-ccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 5799999777788887764 579999999865 45554 467899999873 4555555432 333444444433344
Q ss_pred EEE-EeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec--CCeEEEeecCCc-EEEEEccCCccccc---C-CCCCee
Q 023772 117 VVS-AGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGT-VRTFDIRVGRELSD---D-LGQPVN 188 (277)
Q Consensus 117 l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~-i~i~d~~~~~~~~~---~-~~~~v~ 188 (277)
|+. |-.-|.|++-|+......+..++..|...+..+.++ +..+++++..|+ |||||.+++..+.. . ....+.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 433 556799999999765543345667788888777765 566999999998 89999998876543 2 235799
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 189 CISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 189 ~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
||+|||++++|+++|..|++++|.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999998864
No 236
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=6.3e-13 Score=122.76 Aligned_cols=198 Identities=14% Similarity=0.238 Sum_probs=156.5
Q ss_pred EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772 56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134 (277)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~ 134 (277)
.+.+-..|.++.=+|...+.+||+.||.|++|.-..++.+..++. ..+.|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 344556788888889999999999999999999888877766653 24789999999999999999999999999875
Q ss_pred CCcceEeeccccCcEEEEEecCCeEEEee---cCCcEEEEEccCC---cccccCCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772 135 STEPIQIIDSFQDSVMSVCLTKTEIIGGS---VDGTVRTFDIRVG---RELSDDLGQPVNCISMSNDGNCILASCLDSTL 208 (277)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~d~~i~i~d~~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 208 (277)
+.+......|......+.+-+..+++++ .++.+.+||.... ..+...+.+.++++++-|..+.|++|+.+|.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred -CcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcE
Confidence 3444445555555555655555566543 4678999996532 23445677889999999999999999999999
Q ss_pred EEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 209 RLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 209 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
++||++..++++.|.. +. ...++.+|+..|.|+||++..-.+++.++.
T Consensus 2361 ~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999888877753 11 355789999999999999999888888873
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=6e-11 Score=101.44 Aligned_cols=208 Identities=14% Similarity=0.107 Sum_probs=130.3
Q ss_pred cccceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--
Q 023772 9 TEANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR-- 82 (277)
Q Consensus 9 ~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~-- 82 (277)
.....+..+...+....|+|||++|+.++.+ ..|.+||+.+++... +..+.+.+.+..|+|+++.|+ +.+.++
T Consensus 180 ~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 180 ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 3345566677789999999999999976544 479999998875433 334556677899999998776 444444
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEE--EEecCC
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMS--VCLTKT 157 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 157 (277)
.|.+||+.+++.. .+..+........|+|+++.|+.++. ++ .|.++|+..... ..+......... +..++.
T Consensus 259 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~---~~l~~~~~~~~~~~~spdg~ 334 (417)
T TIGR02800 259 DIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV---RRLTFRGGYNASPSWSPDGD 334 (417)
T ss_pred cEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE---EEeecCCCCccCeEECCCCC
Confidence 5889999877543 34444444556789999998776654 33 466777654322 122212222233 334455
Q ss_pred eEEEeecCC---cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEE
Q 023772 158 EIIGGSVDG---TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEY 222 (277)
Q Consensus 158 ~~~~g~~d~---~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~ 222 (277)
.++.+..++ .|.+||+..+...............|+|+|++|+..+.++ .+++.+.. ++....+
T Consensus 335 ~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 335 LIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred EEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 676666654 6888888765432212122334568999999888877654 34455543 3333333
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=6e-13 Score=103.64 Aligned_cols=227 Identities=11% Similarity=0.142 Sum_probs=142.5
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecc
Q 023772 23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFRGH 101 (277)
Q Consensus 23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h 101 (277)
-+.|+|+|+|+++++.- .+.|-|.++-+....|.. -..|..+.|..+..+++.+ ..|+.|.+|++..-+=-..+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 47899999999998864 888888776543332222 2467788999888887765 56789999999887766777778
Q ss_pred cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCCcEEEEEccCCcc
Q 023772 102 ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDGTVRTFDIRVGRE 178 (277)
Q Consensus 102 ~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~ 178 (277)
..++.++.|+|+++ .+.+...|-.|.+|.+.+.....+ ......+..+.+.+ ...+..+.-.+...+.+...+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 88999999999995 566777899999999976543222 11122233444443 3333332211111112211111
Q ss_pred c--ccCC---CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772 179 L--SDDL---GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY 253 (277)
Q Consensus 179 ~--~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 253 (277)
. .... -...+.+.|+|||+.|+. ||.--.-.+..|.-.. . .....++|.+.+++.|+.|+.+|
T Consensus 168 W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~l--G-~k~v~wsP~~qflavGsyD~~lr 235 (447)
T KOG4497|consen 168 WILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGL--G-LKFVEWSPCNQFLAVGSYDQMLR 235 (447)
T ss_pred HHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeeeeecc--c-eeEEEeccccceEEeeccchhhh
Confidence 0 0111 124567899999998754 5432222222222111 1 12245789999999999999999
Q ss_pred EEECcCccceeee
Q 023772 254 FWDLVDASVVAKF 266 (277)
Q Consensus 254 iwd~~~~~~~~~~ 266 (277)
+-|--+-+.+.+|
T Consensus 236 vlnh~tWk~f~ef 248 (447)
T KOG4497|consen 236 VLNHFTWKPFGEF 248 (447)
T ss_pred hhceeeeeehhhh
Confidence 9876665554443
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.45 E-value=6.3e-11 Score=98.68 Aligned_cols=236 Identities=14% Similarity=0.158 Sum_probs=146.7
Q ss_pred CEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772 31 NYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK 109 (277)
Q Consensus 31 ~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~ 109 (277)
+++ ++-..++.|.+.|..+.+.+.++.........+.++|++++++.++.|+.|.++|+.+++.+.+++.... -.+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEE
Confidence 344 4567789999999999999999987655555678999999999999999999999999999999886554 46799
Q ss_pred EecCCCEEEEEe-CCCcEEEEeCccCCCcceEeecc-------ccCcEEEEEe--cCCeEEEeecC-CcEEEEEccCCcc
Q 023772 110 FNEYSSVVVSAG-YDQSLRAWDCRSHSTEPIQIIDS-------FQDSVMSVCL--TKTEIIGGSVD-GTVRTFDIRVGRE 178 (277)
Q Consensus 110 ~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~g~~d-~~i~i~d~~~~~~ 178 (277)
+++++++++.+. .++.+.++|.++.+ .+..+.. ....+.++.. ....++..-.| +.|.+.|......
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 999999988765 68999999987643 3333221 1122333332 23335555554 6777777655432
Q ss_pred cc---cCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEec----cccce-------eeeeeEecCCCceE
Q 023772 179 LS---DDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYKG----HICKS-------FKTDCCLTNSDAHV 243 (277)
Q Consensus 179 ~~---~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~l 243 (277)
+. ...+.......|+|+++|++++ ..++.|-++|.++++++..+.. |.... ....+.....+...
T Consensus 163 ~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~ 242 (369)
T PF02239_consen 163 LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA 242 (369)
T ss_dssp EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE
T ss_pred cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee
Confidence 21 1234567788999999987665 5567899999999888765432 11110 11111222223333
Q ss_pred EeecCCCeEEEEECcCccceeeeccC
Q 023772 244 TGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 244 ~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
++.-....+.+||..+.+.+++++..
T Consensus 243 ~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 243 IPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccCCccccchhhcCeEEEEEECC
Confidence 22222335667898888898888854
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.44 E-value=7.1e-11 Score=98.58 Aligned_cols=190 Identities=16% Similarity=0.240 Sum_probs=136.8
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCeeEEEEec---cCccEEEEEEc--------------------CCCCEEEEEeCCCcE
Q 023772 28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS---HGREVRDVHVT--------------------ADNSKLISCGGDRQI 84 (277)
Q Consensus 28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~--------------------~~~~~l~t~s~d~~v 84 (277)
|-..|+|....||.+||||..+++....|.. -.+.+.+..|. .+...++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999998887766643 23445555542 223457778889999
Q ss_pred EEEECCCCceeEEee--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772 85 FYWDVSTGRVIRKFR--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (277)
.++++..++.-..+. .|.+.|+++.++.+...|.|++.|+.+..|+....
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---------------------------- 134 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---------------------------- 134 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc----------------------------
Confidence 999999998877765 68999999999988889999999999999986432
Q ss_pred ecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEec--C-C
Q 023772 163 SVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLT--N-S 239 (277)
Q Consensus 163 ~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~-~ 239 (277)
..+++|... ...+.+++.+|||..+++++ ++|++||.++++.+..|.||...+........ . .
T Consensus 135 ---~~~~~~~~~---------~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~ 200 (541)
T KOG4547|consen 135 ---VIIRIWKEQ---------KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGII 200 (541)
T ss_pred ---eeeeeeccC---------CCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccc
Confidence 123444432 23467788999999888875 57999999999999999999755433332222 1 1
Q ss_pred CceE-EeecCCCeEEEEECcC
Q 023772 240 DAHV-TGGSEDGYIYFWDLVD 259 (277)
Q Consensus 240 ~~~l-~sgs~d~~i~iwd~~~ 259 (277)
|.++ .+...+.-|.+|-++.
T Consensus 201 G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 201 GKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cceeeeccccccceeEEEEEc
Confidence 4454 4445566677786554
No 241
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=2e-12 Score=119.64 Aligned_cols=200 Identities=16% Similarity=0.279 Sum_probs=152.8
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-HGREVRDVHVTADNSKLISCGGDRQIFYWDVST 91 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~ 91 (277)
.++.|-..|.++.-+|...+-+||+.||.+++|....+..+..++. ....|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 3455667788888889888999999999999999887777766653 33679999999999999999999999999986
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEe---CCCcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeEEEeecCC
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAG---YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEIIGGSVDG 166 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~d~ 166 (277)
.++....+.|....+...|.. ..+++++ .++.+.+||...... ...+...|...++.+...| ..+++|+.+|
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~-~s~v~~~H~~gaT~l~~~P~~qllisggr~G 2358 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPM-NSLVHTCHDGGATVLAYAPKHQLLISGGRKG 2358 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcc-cceeeeecCCCceEEEEcCcceEEEecCCcC
Confidence 566778889988888877765 5666654 578999999754322 2222244555555555544 4599999999
Q ss_pred cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 167 TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 167 ~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
.+++||++..+.+..... ++ ...++++|+..|.|+||++..-.++..+..
T Consensus 2359 ~v~l~D~rqrql~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred cEEEeehHHHHHHHHhhh-------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 999999987654332211 34 556899999999999999988777776654
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.42 E-value=3.1e-10 Score=97.06 Aligned_cols=220 Identities=14% Similarity=0.079 Sum_probs=136.9
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
..|.++|...+ ..+.+..+...+.+..|+|++++|+.++.+ ..|++||+.+++... +..+...+.++.|+|+++.
T Consensus 170 ~~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCE
Confidence 35777786533 344555566778999999999999877644 479999999876533 3335556667899999987
Q ss_pred EE-EEeCCC--cEEEEeCccCCCcceEeeccccCcE--EEEEecCCeEEEeec-CC--cEEEEEccCCccccc-CCCCCe
Q 023772 117 VV-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSV--MSVCLTKTEIIGGSV-DG--TVRTFDIRVGRELSD-DLGQPV 187 (277)
Q Consensus 117 l~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~-d~--~i~i~d~~~~~~~~~-~~~~~v 187 (277)
|+ +.+.++ .|.+||+.+..... +..+.... ..+..++..++..+. ++ .|.++|+..++.... ......
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~---l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~ 324 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTR---LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYN 324 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEE---CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCc
Confidence 65 444444 58888876543221 11122111 223334555654443 33 467777765543221 223456
Q ss_pred eEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCC---eEEEEECcCcc
Q 023772 188 NCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG---YIYFWDLVDAS 261 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~iwd~~~~~ 261 (277)
....|+|+|++|+.++.++ .|.+||+.++.. +.+.... ......++|++++|+..+.++ .+++.+. ++.
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVST-DGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCc
Confidence 6789999999999888776 789999987544 3333221 123346899999887765543 4555554 455
Q ss_pred ceeeeccC
Q 023772 262 VVAKFKAH 269 (277)
Q Consensus 262 ~~~~~~~h 269 (277)
....+..+
T Consensus 400 ~~~~~~~~ 407 (417)
T TIGR02800 400 FRARLPLG 407 (417)
T ss_pred eeeECCCC
Confidence 56666544
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=1.8e-10 Score=98.89 Aligned_cols=201 Identities=13% Similarity=0.112 Sum_probs=125.4
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCC---CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCC--cE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKD---RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDR--QI 84 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~--~v 84 (277)
...+..|...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|++++|+ +.+.++ .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34456677889999999999999876543 368888998876543 222334556789999999886 444454 58
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG 161 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (277)
.+||+++++.. .+..+........|+|+++.++..+. ++ .|.++++.......+. ..........+.++++.++.
T Consensus 270 y~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEE
Confidence 88899887654 34445555667889999987766553 33 4666676554322221 11111122234445556654
Q ss_pred eec-CC--cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECC
Q 023772 162 GSV-DG--TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRS 214 (277)
Q Consensus 162 g~~-d~--~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~ 214 (277)
... ++ .|.+||+.+++..............|+|+|++++..+.+ ..|++++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 443 33 477889877643221111122345899999998776654 246677774
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.6e-11 Score=102.16 Aligned_cols=190 Identities=12% Similarity=0.183 Sum_probs=141.1
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee---
Q 023772 23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR--- 99 (277)
Q Consensus 23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~--- 99 (277)
.++++.-.--|+.++....|.-.+++.|..+..|+...+.++++.+++.+.+|++|+.||.|..||..+...+.++.
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 34455444445566666788888999999999998888999999999999999999999999999998776555443
Q ss_pred ---cccC-----ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC---eEEEeecCCcE
Q 023772 100 ---GHES-----EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT---EIIGGSVDGTV 168 (277)
Q Consensus 100 ---~h~~-----~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~d~~i 168 (277)
.|.. .|+++.|..++-.++.|..+|.+.+||++...+..+. -+...-++..+.+.+. ..+.......+
T Consensus 218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVVSMDKRIL 296 (703)
T ss_pred ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEEecchHHh
Confidence 2322 4999999999999999999999999999975432211 1223344555555332 23333445679
Q ss_pred EEEEccCCcccccCC-CCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 169 RTFDIRVGRELSDDL-GQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 169 ~i~d~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
+|||-.+++.+.... ...++.+|+-|++.+++++-.+..+..|=+
T Consensus 297 kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 297 KIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred hhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 999999888765533 346899999999999999988887765543
No 245
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=5.1e-10 Score=94.40 Aligned_cols=232 Identities=17% Similarity=0.169 Sum_probs=143.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee---
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN--- 106 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~--- 106 (277)
+..++.++.|+.+..+|..+|+.+-..... +.+.+.-.. .+..++.+..++.+..||.++|+.+.++........
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 456667777888888888787766554432 222221111 245677778899999999999998877654322111
Q ss_pred --EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---------cEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772 107 --AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---------SVMSVCLTKTEIIGGSVDGTVRTFDIRV 175 (277)
Q Consensus 107 --~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 175 (277)
+.... +..++.+..++.+..+|.+++............. ........+..++.++.+|.+..||..+
T Consensus 183 ~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 183 SASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11111 2467778888999999987654321111110000 0001112345677888899999999988
Q ss_pred CcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772 176 GRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 176 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
++..............+ .+..++.++.||.++.+|..+++.+..+....... .....+ .+..++.++.||.|+++
T Consensus 261 G~~~W~~~~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 261 GRVLWKRDASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-LTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CcEEEeeccCCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCc-cccCEE--ECCEEEEEeCCCEEEEE
Confidence 86543221111122222 45678888899999999999998876553211111 111111 35678889999999999
Q ss_pred ECcCccceeeeccCc
Q 023772 256 DLVDASVVAKFKAHS 270 (277)
Q Consensus 256 d~~~~~~~~~~~~h~ 270 (277)
|..+|+++.+++.+.
T Consensus 336 d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 336 SREDGSFVARLKTDG 350 (377)
T ss_pred ECCCCCEEEEEEcCC
Confidence 999999998888654
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.1e-10 Score=97.45 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=123.0
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeC-CC--cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEE-EeCCCc--EE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGK-DR--TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLIS-CGGDRQ--IF 85 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~-d~--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d~~--v~ 85 (277)
..+..+...+....|+|||+.|+..+. ++ .|.+||+.+++.... ..-.+......|+|+++.|+. .+.++. |.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 344556677889999999999886544 33 577889887764322 222234457899999998764 455664 77
Q ss_pred EEECCCCceeEEeecccCceeEEEEecCCCEEEEEeC-CCc--EEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (277)
++|+++++.. .+..+........|+|+++.++..+. ++. |.++|+.+.....+. .......-..+.++++.++..
T Consensus 290 ~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEE
Confidence 8888877643 34445555677899999987766543 444 555566544322221 122111112344455555544
Q ss_pred ec-CCc--EEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECCCCceEEEEec
Q 023772 163 SV-DGT--VRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 163 ~~-d~~--i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~ 224 (277)
+. ++. |.++|+..++..............|+|+|++|+..+.++ .+++++. ++...+.+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~ 434 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPA 434 (448)
T ss_pred EecCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcC
Confidence 33 343 455677665432111111122347999999887765433 3677776 4555555543
No 247
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=1.9e-11 Score=101.94 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=129.9
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCc
Q 023772 70 ADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDS 148 (277)
Q Consensus 70 ~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 148 (277)
|...+++....||.+++||+..++....|.+-. ..+.-++--.|.+.-.. +........
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----------------~~s~t~~~~~w~L~~~~s~~k~~~~~~---- 62 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA----------------SLSGTCTYTKWGLSADYSPMKWLSLEK---- 62 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccch----------------hccCcceeEEEEEEeccchHHHHhHHH----
Confidence 445788889999999999999888766665311 11222333444432111 000000000
Q ss_pred EEEEEecCCeEEEeecCCcEEEEEccCCccc---c-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 149 VMSVCLTKTEIIGGSVDGTVRTFDIRVGREL---S-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 149 ~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
+.....+...++-|...|.|.+|+...++.. . ..+...|+++.++.+-..|-+++.|..+..|+...++.+..+..
T Consensus 63 ~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~ 142 (541)
T KOG4547|consen 63 AKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE 142 (541)
T ss_pred HhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc
Confidence 1111122334777888999999998776532 2 35677899999998888999999999999999999998888876
Q ss_pred cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEee
Q 023772 225 HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
... .....|++||++.+++||. +|++||+++++++.+|.+|..+|+.+
T Consensus 143 ~~~--~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 143 QKP--LVSSLCISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred CCC--ccceEEEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEE
Confidence 532 3455678999999998865 89999999999999999999999875
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=9.3e-09 Score=84.22 Aligned_cols=233 Identities=11% Similarity=0.099 Sum_probs=145.4
Q ss_pred EeCCCCEEEEEeC----------CCcEEEEcCCCCeeEEEEeccC-------ccEEEEEEcCCCCEEEEEe--CCCcEEE
Q 023772 26 FNGDGNYCLSCGK----------DRTIRLWNPHRGIHIKTYKSHG-------REVRDVHVTADNSKLISCG--GDRQIFY 86 (277)
Q Consensus 26 ~~~~~~~l~s~s~----------d~~v~iwd~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~l~t~s--~d~~v~~ 86 (277)
++|||+.++.+.. +..|.+||..+.+.+..+.... .....++++|++++++... .+..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998887655 8899999999999988886422 2344889999999988765 3789999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc---eEeecc-----ccCcEEEEEe-cCC
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP---IQIIDS-----FQDSVMSVCL-TKT 157 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~-----~~~~~~~~~~-~~~ 157 (277)
.|+++++.+.++.--. ...-....+...++ -+.||......+....... ...+.. ...+ .+.. ++.
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP--~~~~~dg~ 207 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTFFM--HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP--AYSNKSGR 207 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCccEE--EeecCceEEEEecCCCceEEeeeeeecCCccccccCC--ceEcCCCc
Confidence 9999999888765311 11111122222221 1234444332222111100 011111 0111 1122 344
Q ss_pred eEEEeecCCcEEEEEccCCc-----ccccC---------CCCCeeEEEEeCCCCEEEEEe----------cCCeEEEEEC
Q 023772 158 EIIGGSVDGTVRTFDIRVGR-----ELSDD---------LGQPVNCISMSNDGNCILASC----------LDSTLRLLDR 213 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~~~-----~~~~~---------~~~~v~~~~~s~~~~~l~~~~----------~d~~i~~wd~ 213 (277)
.++... .|+|.+.|+.... .+... ...-+.-++++++++.++... ..+.|.++|.
T Consensus 208 ~~~vs~-eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 208 LVWPTY-TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEEEec-CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 444444 4999999964321 11110 112244599999999887743 1247999999
Q ss_pred CCCceEEEEeccccceeeeeeEecCCCc-eEEeec-CCCeEEEEECcCccceeeec
Q 023772 214 STGELLQEYKGHICKSFKTDCCLTNSDA-HVTGGS-EDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~sgs-~d~~i~iwd~~~~~~~~~~~ 267 (277)
.+++.+..+.... ......+++|++ +|++.. .++.|.+.|..+++.++++.
T Consensus 287 ~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 287 KTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 9999998876321 234467899999 777555 67889999999999999883
No 249
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=5.1e-11 Score=92.51 Aligned_cols=240 Identities=18% Similarity=0.303 Sum_probs=158.7
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-----eeEEEEeccC------------ccEEEEEEcCCCC--EEEE
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-----IHIKTYKSHG------------REVRDVHVTADNS--KLIS 77 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~h~------------~~v~~~~~~~~~~--~l~t 77 (277)
....|+++.|...|.|+++|...|.|.+|.-... +....|+.|. ..|..+.|..+++ .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456899999999999999999999999964321 2233455554 3477777765443 4677
Q ss_pred EeCCCcEEEEECCCCc-------------------e------------------e-----EEe-ecccCceeEEEEecCC
Q 023772 78 CGGDRQIFYWDVSTGR-------------------V------------------I-----RKF-RGHESEVNAVKFNEYS 114 (277)
Q Consensus 78 ~s~d~~v~~wd~~~~~-------------------~------------------~-----~~~-~~h~~~v~~i~~~~~~ 114 (277)
.+.|++||+|-+-... + + +.+ ..|..-++++.++.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7899999999863220 0 0 111 3578889999999998
Q ss_pred CEEEEEeCCCcEEEEeCccCCCcceEeec-------cccCcEEEEEecCC---eEEEeecCCcEEEEEccCCccc-----
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTEPIQIID-------SFQDSVMSVCLTKT---EIIGGSVDGTVRTFDIRVGREL----- 179 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~----- 179 (277)
+.++++ .|-.|.+|++..... ...+.+ .....+.+..+.|. .+.-.+..|+|++-|+|+....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred heeeec-cceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 888874 677899999864321 111111 11123344444443 3556678899999999854321
Q ss_pred -cc----C--C------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-CceEEEEecccc-------------ceeee
Q 023772 180 -SD----D--L------GQPVNCISMSNDGNCILASCLDSTLRLLDRST-GELLQEYKGHIC-------------KSFKT 232 (277)
Q Consensus 180 -~~----~--~------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~-------------~~~~~ 232 (277)
.. . . -..|..+.|+++|+++++-.. -++++||... .+++.+..-|.. ..-..
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 10 0 0 135777899999998877544 4899999875 456776654411 11234
Q ss_pred eeEecCCCceEEeecCCCeEEEEECcC
Q 023772 233 DCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 233 ~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
.+.++.++..+++||..+.--+|-..+
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEEecCCcccccccccccceeeecccc
Confidence 567788889999999888888886443
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.35 E-value=2.7e-10 Score=89.49 Aligned_cols=246 Identities=17% Similarity=0.264 Sum_probs=164.7
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcC-CCCeeEE-EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNP-HRGIHIK-TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~-~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
...+.||.+.|+....-|..+-+++.+.|.++|||-- ..++.-. ....-..+++++.+.++..+|+.|-..|++.-+.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 3456899999999888888888999999999999953 2333221 2222356899999999999999999999999987
Q ss_pred CCC----CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc-cCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772 89 VST----GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR-SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS 163 (277)
Q Consensus 89 ~~~----~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (277)
+.. ...++.+..|.++|..+-|+...+.+++.+.|..+. |-.. ......-..+... .....+.+. ....|-
T Consensus 97 ~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~-~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 97 LSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETP-ASALQFDAL--YAFVGD 172 (404)
T ss_pred hhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeecc-CCCCceeeE--EEEecc
Confidence 743 345677888999999999999999999999998765 4432 2221111111110 000111111 233344
Q ss_pred cCCcEEEEEccC--Cccccc--CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce-EEEEeccccceeeeeeEecC
Q 023772 164 VDGTVRTFDIRV--GRELSD--DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL-LQEYKGHICKSFKTDCCLTN 238 (277)
Q Consensus 164 ~d~~i~i~d~~~--~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 238 (277)
..|.+..-.+.. ...+.. .+..++.+++|.|....|++|..|..+-+||+.-++- ..+..+|.+.+... +.-+
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l--~~~~ 250 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQAL--SYAQ 250 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhh--hhhh
Confidence 444444433221 122222 3456899999999999999999999999999864433 34556665543222 2223
Q ss_pred CCceEEeecCCCeEEEEECcCccc
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASV 262 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~ 262 (277)
--+.+.++++||.|.+||.+..+.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred hheeeeeccCCCeEEEEeccceee
Confidence 345688899999999999886544
No 251
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.4e-11 Score=100.54 Aligned_cols=246 Identities=17% Similarity=0.239 Sum_probs=171.4
Q ss_pred eeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEcCC-CCee--EEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 023772 14 LKGHEGAVLAARFNGD--GNYCLSCGKDRTIRLWNPH-RGIH--IKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYW 87 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~--~~~l~s~s~d~~v~iwd~~-~~~~--~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~w 87 (277)
-.||...|.-..|-|. ..-+++++.||.+|+=.+. ++.+ .+.+..|.++|.-++..|... .|++++.|+.++-+
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~ 260 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHI 260 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeee
Confidence 3578888888888773 4688999999999997643 3332 345667999999999998764 58999999999999
Q ss_pred ECCCCceeEE---eecccC---ceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEe----e------ccccCcEE
Q 023772 88 DVSTGRVIRK---FRGHES---EVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQI----I------DSFQDSVM 150 (277)
Q Consensus 88 d~~~~~~~~~---~~~h~~---~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~----~------~~~~~~~~ 150 (277)
|+.++.+-.. -..+.. ...+++.+|... .++.++.|-.+++||.+....+.... + ......|+
T Consensus 261 Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~IT 340 (559)
T KOG1334|consen 261 DLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNIT 340 (559)
T ss_pred eeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccce
Confidence 9987654322 223333 567888888755 79999999999999987644331111 0 11122344
Q ss_pred EEEe--cCCeEEEeecCCcEEEEEccCCcc------------ccc-CC----CCCeeEEE-EeCCCCEEEEEecCCeEEE
Q 023772 151 SVCL--TKTEIIGGSVDGTVRTFDIRVGRE------------LSD-DL----GQPVNCIS-MSNDGNCILASCLDSTLRL 210 (277)
Q Consensus 151 ~~~~--~~~~~~~g~~d~~i~i~d~~~~~~------------~~~-~~----~~~v~~~~-~s~~~~~l~~~~~d~~i~~ 210 (277)
.+.. .+..+++.-.|-.|.++.-..+.- ... .. ...|..+- |-|...|+++||.-|.|.|
T Consensus 341 gl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFi 420 (559)
T KOG1334|consen 341 GLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFI 420 (559)
T ss_pred eEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEE
Confidence 4444 455677777788888885432211 000 11 12366665 4678899999999999999
Q ss_pred EECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCcc
Q 023772 211 LDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDAS 261 (277)
Q Consensus 211 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~ 261 (277)
|+-.+++.++.+.+... ++...-..|--..||+.+-|.-||||-..+.+
T Consensus 421 W~K~t~eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred EecchhHHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 99999999988876532 22222345667789999999999999875443
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=2.5e-08 Score=83.03 Aligned_cols=243 Identities=15% Similarity=0.208 Sum_probs=150.5
Q ss_pred EEEEEEeCCCCEEEEEeC----CCcEEEEcCCC--Cee--EEEEeccCccEEEEEEcCCCCEEEEEe-CCCcEEEEECCC
Q 023772 21 VLAARFNGDGNYCLSCGK----DRTIRLWNPHR--GIH--IKTYKSHGREVRDVHVTADNSKLISCG-GDRQIFYWDVST 91 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~----d~~v~iwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s-~d~~v~~wd~~~ 91 (277)
...+++++++++|.+..+ ++.|..|++.. +.+ +............+++++++++|+++. .++++.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 456888999999998876 57898887665 332 333432344556799999999998886 589999999986
Q ss_pred -CceeEE---ee----------cccCceeEEEEecCCCEEEEEe-CCCcEEEEeCccCCCc--ceEeec-cccCcEEEEE
Q 023772 92 -GRVIRK---FR----------GHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRSHSTE--PIQIID-SFQDSVMSVC 153 (277)
Q Consensus 92 -~~~~~~---~~----------~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~--~~~~~~-~~~~~~~~~~ 153 (277)
+.+... +. .......++.++|++++++... ....|.+|++...... +...+. ........+.
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 433222 21 1124467899999999777653 3457999998755421 111111 1222334455
Q ss_pred ecCC--e-EEEeecCCcEEEEEcc--CCcc-----ccc---CC-C-CCeeEEEEeCCCCEEEEE-ecCCeEEEEECC--C
Q 023772 154 LTKT--E-IIGGSVDGTVRTFDIR--VGRE-----LSD---DL-G-QPVNCISMSNDGNCILAS-CLDSTLRLLDRS--T 215 (277)
Q Consensus 154 ~~~~--~-~~~g~~d~~i~i~d~~--~~~~-----~~~---~~-~-~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~--~ 215 (277)
++++ . .++...+++|.+|++. .+.. +.. .. . .....+.++|+|++|.++ ..+++|-+|++. +
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~ 278 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT 278 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT
T ss_pred EcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC
Confidence 5443 4 4556678889999887 3211 111 11 1 257789999999987665 467789999983 3
Q ss_pred Cce--EEEEeccccceeeeeeEecCCCceEEee-cCCCeEEEEEC--cCccceee
Q 023772 216 GEL--LQEYKGHICKSFKTDCCLTNSDAHVTGG-SEDGYIYFWDL--VDASVVAK 265 (277)
Q Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~d~~i~iwd~--~~~~~~~~ 265 (277)
+++ +..+... ......+.++|+|++|+++ -.++.|.+|++ .+|.+...
T Consensus 279 g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 279 GTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 443 3333221 2235667889999998865 47778999976 46665433
No 253
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=6.6e-10 Score=92.45 Aligned_cols=237 Identities=14% Similarity=0.222 Sum_probs=144.5
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE-----eCC-----CcEEEE
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC-----GGD-----RQIFYW 87 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~-----s~d-----~~v~~w 87 (277)
..+++..+++++|++++- +.+..++|++..++..+.+... ....++.|+|.+.+|.|= ..+ -.+++|
T Consensus 34 ~~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 455777888999877665 5668999999888754444443 278999999999988762 222 346799
Q ss_pred ECCCCceeEEeec----------------------------------------ccCceeEEEEecCCC--EEEE-----E
Q 023772 88 DVSTGRVIRKFRG----------------------------------------HESEVNAVKFNEYSS--VVVS-----A 120 (277)
Q Consensus 88 d~~~~~~~~~~~~----------------------------------------h~~~v~~i~~~~~~~--~l~s-----~ 120 (277)
+++++.....+.. |...++...++|... .+++ .
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 9988543322211 334444455554411 1111 1
Q ss_pred eCCCcEEEEeCccCCC------------cceEe----------------------------------e--------cccc
Q 023772 121 GYDQSLRAWDCRSHST------------EPIQI----------------------------------I--------DSFQ 146 (277)
Q Consensus 121 ~~d~~i~iwd~~~~~~------------~~~~~----------------------------------~--------~~~~ 146 (277)
|.-..+++|....... ..++. . -...
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~ 270 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKE 270 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCC
Confidence 3334456665431000 00000 0 0012
Q ss_pred CcEEEEEecCCe----EEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceE
Q 023772 147 DSVMSVCLTKTE----IIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELL 219 (277)
Q Consensus 147 ~~~~~~~~~~~~----~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~ 219 (277)
++|.++.+++.. ++-|-+--++.+||++-. .+...-.++=+++-|+|.|++|+.++. -|.+-+||+.+.+++
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 344445544332 233445556666666532 223333456788999999999988775 468999999998888
Q ss_pred EEEeccccceeeeeeEecCCCceEEeecC------CCeEEEEECcCccce
Q 023772 220 QEYKGHICKSFKTDCCLTNSDAHVTGGSE------DGYIYFWDLVDASVV 263 (277)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~------d~~i~iwd~~~~~~~ 263 (277)
..+.... .+.+.++|||.++++++. |+-++||+.. |.++
T Consensus 350 ~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l 394 (566)
T KOG2315|consen 350 AKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLL 394 (566)
T ss_pred cccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Ccee
Confidence 8776542 345678999999988753 7889999985 4444
No 254
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.5e-09 Score=90.24 Aligned_cols=220 Identities=12% Similarity=0.097 Sum_probs=131.7
Q ss_pred cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEE
Q 023772 41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV 117 (277)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 117 (277)
.|.++|...+. .+.+..+...+.+..|+|++++|+..+.+ ..|.+||+.+++... +......+....|+|+++.+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 46777776443 34455566789999999999999876644 368999998876532 22233445568999999877
Q ss_pred E-EEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCC--cEEEEEccCCcccccC-CCCCee
Q 023772 118 V-SAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDG--TVRTFDIRVGRELSDD-LGQPVN 188 (277)
Q Consensus 118 ~-s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~--~i~i~d~~~~~~~~~~-~~~~v~ 188 (277)
+ +.+.++ .|.++|+.+..... +...........+ ++..++..+ .++ .|.++|+..++..... ......
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~ 334 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSR---VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNA 334 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEE---cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCcc
Confidence 6 455555 57777887543221 2222222222333 445555443 333 4666677655422111 122234
Q ss_pred EEEEeCCCCEEEEEecC-C--eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC---CeEEEEECcCccc
Q 023772 189 CISMSNDGNCILASCLD-S--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED---GYIYFWDLVDASV 262 (277)
Q Consensus 189 ~~~~s~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~iwd~~~~~~ 262 (277)
...|+|+|++|+..+.+ + .|.+||+.+++.. .+.... . .....++|+|++++..+.+ ..|++++.. +..
T Consensus 335 ~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~-~--~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~ 409 (430)
T PRK00178 335 RPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTS-L--DESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRV 409 (430)
T ss_pred ceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCC-C--CCCceECCCCCEEEEEEecCCceEEEEEECC-CCc
Confidence 56899999998777643 2 5888999887643 332211 1 1234689999988765433 357777874 445
Q ss_pred eeeeccCc
Q 023772 263 VAKFKAHS 270 (277)
Q Consensus 263 ~~~~~~h~ 270 (277)
...+..+.
T Consensus 410 ~~~l~~~~ 417 (430)
T PRK00178 410 RLPLPTAQ 417 (430)
T ss_pred eEECcCCC
Confidence 55555443
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=1e-09 Score=84.65 Aligned_cols=239 Identities=22% Similarity=0.280 Sum_probs=150.9
Q ss_pred CcEEEEEEe---CCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccC------ccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 19 GAVLAARFN---GDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHG------REVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 19 ~~V~~~~~~---~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
..++.+.|. .+|. .++-+-.+|.|.++..........+++-+ ....++.|++.+..++++-.+|.+.+-+
T Consensus 70 s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~ 149 (339)
T KOG0280|consen 70 STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVY 149 (339)
T ss_pred cccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEe
Confidence 345566665 2455 55667778889888654333333332211 1245778899999999999999998665
Q ss_pred CCCCce--eEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEe-eccccCcEEEEEec---CCeEEE
Q 023772 89 VSTGRV--IRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDSFQDSVMSVCLT---KTEIIG 161 (277)
Q Consensus 89 ~~~~~~--~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~ 161 (277)
.....+ +++++.|.-+.+-..|+.. .+++.+||.|+.+..||+|.+. +.+.. ...|...|.++..+ |..+++
T Consensus 150 ~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 150 ETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred cceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEE
Confidence 544433 4478999999999999754 5689999999999999999433 21111 23345556666544 457999
Q ss_pred eecCCcEEEEEccC-Cccccc-CCCCCeeEEEEeCCCC-EEEEEecCCeEEEEECCCCce-----EEEEeccccceeeee
Q 023772 162 GSVDGTVRTFDIRV-GRELSD-DLGQPVNCISMSNDGN-CILASCLDSTLRLLDRSTGEL-----LQEYKGHICKSFKTD 233 (277)
Q Consensus 162 g~~d~~i~i~d~~~-~~~~~~-~~~~~v~~~~~s~~~~-~l~~~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~~~~~ 233 (277)
|++|-.|++||.|+ ++.+.. ..+.-|..+..+|.-. .+++++.-+-.++-+.+.+.. ...++.|....+.-+
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccc
Confidence 99999999999995 444433 4557788899888532 233334444467777654322 233444543333333
Q ss_pred eEecCCCceEEee-cCCCeEE-EEECcCc
Q 023772 234 CCLTNSDAHVTGG-SEDGYIY-FWDLVDA 260 (277)
Q Consensus 234 ~~~~~~~~~l~sg-s~d~~i~-iwd~~~~ 260 (277)
+ .....++||+ ..|+.++ +|-.-++
T Consensus 309 W--d~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 309 W--DSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred c--ccccceeeeeeccccceeeeeeeccC
Confidence 2 1223457764 3677755 7754444
No 256
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.3e-11 Score=95.12 Aligned_cols=255 Identities=16% Similarity=0.143 Sum_probs=172.4
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC--C-eeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR--G-IHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQIFYWDVST 91 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~--~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~wd~~~ 91 (277)
-|.+.|+.+.- ...+++.+++.||.++.|-... | +.++.+..|-+.+.+++.+-++-.+.|.+. |..+|++|+++
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 37888877643 4567999999999999997432 2 345667889999999999999999999777 99999999986
Q ss_pred CceeE--EeecccCceeEEEEecCC----CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee
Q 023772 92 GRVIR--KFRGHESEVNAVKFNEYS----SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS 163 (277)
Q Consensus 92 ~~~~~--~~~~h~~~v~~i~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~ 163 (277)
-..+. .+..-...+. + +...+ .+.++.-.++.+.++|......+....-..|..++..... ..+.+++..
T Consensus 86 ~DminmiKL~~lPg~a~-w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-W-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE-E-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 54321 1111112211 1 11112 2334445689999999876544444333445555554444 345577777
Q ss_pred cCCcEEEEEccCCccc-------cc----------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc-
Q 023772 164 VDGTVRTFDIRVGREL-------SD----------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH- 225 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~-------~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~- 225 (277)
..|.|..|......+. .. .......++.|+|+|..+.+-+.|..|++++.+++++++.+.-.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~ 243 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVL 243 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccc
Confidence 7899999987631111 00 11245788999999999999999999999999998776554311
Q ss_pred ------------------------------ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcceeEe
Q 023772 226 ------------------------------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVVKL 275 (277)
Q Consensus 226 ------------------------------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v~~ 275 (277)
......+..+|...+++|.-|+-=| |++.++.+++++..+... .+||+
T Consensus 244 t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~-e~ir~ 321 (558)
T KOG0882|consen 244 TDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD-EAIRF 321 (558)
T ss_pred hhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc-hhhhh
Confidence 0112334556777788988888765 999999999988777543 34443
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=4.3e-09 Score=90.46 Aligned_cols=221 Identities=13% Similarity=0.067 Sum_probs=129.3
Q ss_pred cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEE
Q 023772 41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVV 117 (277)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l 117 (277)
.+.++|..... .+.+..+...+.+..|+|++++|+-.+.+ ..|.+||+.+++... +...........|+|+++.|
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEE
Confidence 56666754433 34444556788999999999998876543 258899998876432 22222334467899999977
Q ss_pred EE-EeCCCc--EEEEeCccCCCcceEeeccccCcEEEEEe--cCCeEEEee-cCC--cEEEEEccCCccccc-CCCCCee
Q 023772 118 VS-AGYDQS--LRAWDCRSHSTEPIQIIDSFQDSVMSVCL--TKTEIIGGS-VDG--TVRTFDIRVGRELSD-DLGQPVN 188 (277)
Q Consensus 118 ~s-~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~-~d~--~i~i~d~~~~~~~~~-~~~~~v~ 188 (277)
+. .+.++. |.++|+.+..... +...........+ ++..++..+ .++ .|.++|+..++.... ..+....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~---lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~ 353 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTR---ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNL 353 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEE---CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCc
Confidence 64 566675 6666776543222 2222222223333 445555433 334 455667765543221 1222234
Q ss_pred EEEEeCCCCEEEEEecC-C--eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeec-CCC--eEEEEECcCccc
Q 023772 189 CISMSNDGNCILASCLD-S--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGS-EDG--YIYFWDLVDASV 262 (277)
Q Consensus 189 ~~~~s~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~d~--~i~iwd~~~~~~ 262 (277)
..+|+|+|++|+..+.+ + .|.++|+.+++.. .+.... ......++|+++.++..+ .++ .+++++. +|..
T Consensus 354 ~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~ 428 (448)
T PRK04792 354 GGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRF 428 (448)
T ss_pred CeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCc
Confidence 56899999998776543 3 4566788777643 332221 112346899999877544 333 4777887 5777
Q ss_pred eeeeccCcc
Q 023772 263 VAKFKAHSL 271 (277)
Q Consensus 263 ~~~~~~h~~ 271 (277)
...+..+.+
T Consensus 429 ~~~l~~~~g 437 (448)
T PRK04792 429 KARLPAGQG 437 (448)
T ss_pred eEECcCCCC
Confidence 777765543
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.29 E-value=3.5e-09 Score=80.76 Aligned_cols=231 Identities=13% Similarity=-0.012 Sum_probs=144.9
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCe-eEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee
Q 023772 29 DGNYCLSCGKDRTIRLWNPHRGI-HIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106 (277)
Q Consensus 29 ~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~ 106 (277)
...+|+.||.-|...+|...+.. .......|...|+-+.=.. ....+.-++.|.++|+.+++.+..........-.++
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 34588999999999999988653 3334444443332221111 123466788999999999875543322221112378
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCc--EEEEEecCCeEEEeecCCcEEEEEccCCccc----
Q 023772 107 AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDS--VMSVCLTKTEIIGGSVDGTVRTFDIRVGREL---- 179 (277)
Q Consensus 107 ~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~---- 179 (277)
++.++++++++++.+.-..|..|.+.........+. ....+. ..++.-....++++..||++.|||+|.....
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 899999999999999999999999865433222211 112222 2333334456999999999999999875432
Q ss_pred ---ccCCCCCeeEEEEeCCCC--EEEEEecCCeEEEEECCCCceEEEEecccc------ceeeeeeEecCCCceEEeecC
Q 023772 180 ---SDDLGQPVNCISMSNDGN--CILASCLDSTLRLLDRSTGELLQEYKGHIC------KSFKTDCCLTNSDAHVTGGSE 248 (277)
Q Consensus 180 ---~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~sgs~ 248 (277)
...+...++.+.|++-|. .|+..-.-+.+.+.|+++++-.+.+.-... ...+.-.+++.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 123567899999998653 455555566899999998765544322111 111333456666666666555
Q ss_pred CCeEEEEECcCc
Q 023772 249 DGYIYFWDLVDA 260 (277)
Q Consensus 249 d~~i~iwd~~~~ 260 (277)
+ .+.-|++...
T Consensus 323 ~-~~ae~ni~sr 333 (344)
T KOG4532|consen 323 L-QGAEYNILSR 333 (344)
T ss_pred h-hhheeecccc
Confidence 4 4666776643
No 259
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.28 E-value=6.4e-09 Score=81.94 Aligned_cols=215 Identities=22% Similarity=0.281 Sum_probs=135.5
Q ss_pred CCcEEEEcCCCCeeEEEEeccCccEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCE
Q 023772 39 DRTIRLWNPHRGIHIKTYKSHGREVRDVH--VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSV 116 (277)
Q Consensus 39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 116 (277)
+++|..||..+|+.+-....- ....... ..++++++++++.++.+..||..+|+.+.++.. ..++.... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLG-PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECS-SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECC-CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 689999999999988777541 1121111 333567888889999999999999999887765 33322222 223456
Q ss_pred EEEEeCCCcEEEEeCccCCCcce-Eeeccc---cCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC-CC-----CC
Q 023772 117 VVSAGYDQSLRAWDCRSHSTEPI-QIIDSF---QDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD-LG-----QP 186 (277)
Q Consensus 117 l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~-----~~ 186 (277)
++.++.|+.+..+|..++..... ...... ........+.++.++.+..++.|..+|+++++.+... .. .+
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 66667888999999776654322 111100 1112334445777888888999999999988764321 11 11
Q ss_pred ------eeEEEEeCCCCEEEEEecCCe-EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 187 ------VNCISMSNDGNCILASCLDST-LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 187 ------v~~~~~s~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+..-.+..++ .++.+..++. +.+ |..+++.+.... ... ....+...+..++.++.++.|..||+.+
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~---~~~~~~~~~~~l~~~~~~~~l~~~d~~t 231 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISG---IYSLPSVDGGTLYVTSSDGRLYALDLKT 231 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS----ECECEECCCTEEEEEETTTEEEEEETTT
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCC---ccCCceeeCCEEEEEeCCCEEEEEECCC
Confidence 1222222344 6777777775 555 999998664332 111 1112345677777777999999999999
Q ss_pred ccce
Q 023772 260 ASVV 263 (277)
Q Consensus 260 ~~~~ 263 (277)
|+.+
T Consensus 232 G~~~ 235 (238)
T PF13360_consen 232 GKVV 235 (238)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 9875
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=2.8e-08 Score=93.31 Aligned_cols=238 Identities=16% Similarity=0.158 Sum_probs=152.5
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEcCCCCeeEEEEec--------------cCccEEEEEEcCCCCEEEEE-eCCCcEE
Q 023772 22 LAARFNGD-GNYCLSCGKDRTIRLWNPHRGIHIKTYKS--------------HGREVRDVHVTADNSKLISC-GGDRQIF 85 (277)
Q Consensus 22 ~~~~~~~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~l~t~-s~d~~v~ 85 (277)
..+++++. +.+.++-+.++.|++||.. +..+..+.. +-.....+++.++++.|+.+ ...+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788874 6677777888999999975 444443332 11235789999888766554 4557899
Q ss_pred EEECCCCceeEEeecc-----------------cCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceE------e
Q 023772 86 YWDVSTGRVIRKFRGH-----------------ESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQ------I 141 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~h-----------------~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~ 141 (277)
.+|..++.. .++.+- -..-+.+++++ ++.++++.+.++.|++||.......... .
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 999877653 333210 01235789998 5667788888999999997653211000 0
Q ss_pred ecc------ccCcEEEEEecC--Ce-EEEeecCCcEEEEEccCCcccc---------c---C-----------CCCCeeE
Q 023772 142 IDS------FQDSVMSVCLTK--TE-IIGGSVDGTVRTFDIRVGRELS---------D---D-----------LGQPVNC 189 (277)
Q Consensus 142 ~~~------~~~~~~~~~~~~--~~-~~~g~~d~~i~i~d~~~~~~~~---------~---~-----------~~~~v~~ 189 (277)
... .......+.+++ .. +++.+.++.|++||+.++.... . . .-.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 000 001122344443 43 4556667899999987643210 0 0 0113468
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc------------cceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772 190 ISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI------------CKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 190 ~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
++++++|+.+++-..++.|++||..++.... +.+.. .......++++++|+++++-+.++.|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 8999999988998999999999998776543 22211 0112344577889998888899999999999
Q ss_pred cCccc
Q 023772 258 VDASV 262 (277)
Q Consensus 258 ~~~~~ 262 (277)
.+++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98865
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=3.1e-10 Score=89.16 Aligned_cols=121 Identities=22% Similarity=0.398 Sum_probs=99.7
Q ss_pred eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----------------------------------------Ce
Q 023772 13 VLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----------------------------------------GI 51 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----------------------------------------~~ 51 (277)
....|.+.|..+.|+...+++++++.|..+.---.+. -.
T Consensus 109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCc
Confidence 3468999999999999999999999987653221111 12
Q ss_pred eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
.+.++.+|.+++.+++|.+....+++|..|..+.+||+...+ ....+.+|...|..+...+--+.+++++.||.|-+|+
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 345678899999999999999999999999999999997543 4556788999999999888889999999999999999
Q ss_pred Ccc
Q 023772 131 CRS 133 (277)
Q Consensus 131 ~~~ 133 (277)
.+.
T Consensus 269 mn~ 271 (404)
T KOG1409|consen 269 MNV 271 (404)
T ss_pred ccc
Confidence 864
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.23 E-value=2.1e-08 Score=84.64 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=142.5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK 109 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~ 109 (277)
+..++.++.++.+.-+|..+|+.+-.++........... ++..++.++.++.+..+|.++|+.+.+..... .+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 567888889999999999999887666544332222222 46788888899999999999999887655322 222111
Q ss_pred EecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEeecCCcEEEEEccCCcccccC-CCC
Q 023772 110 FNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD-LGQ 185 (277)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~-~~~ 185 (277)
.. .+..++.++.|+.+..||.+++............. ...........++.+..++.+..+|.++++..... ...
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~ 220 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVAL 220 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecccc
Confidence 11 24466777889999999987654321111111000 00011112345777888899999999887653221 100
Q ss_pred -----C------e-eEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEE
Q 023772 186 -----P------V-NCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIY 253 (277)
Q Consensus 186 -----~------v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 253 (277)
. + .+..+ .+..++.++.++.++.||..+++.+...... .. . .+...+..++.++.||.++
T Consensus 221 ~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~---~~-~--~p~~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 221 PKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS---SY-Q--GPAVDDNRLYVTDADGVVV 292 (377)
T ss_pred CCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC---Cc-c--CceEeCCEEEEECCCCeEE
Confidence 0 0 11112 2457888889999999999999887665421 11 1 1222456777788999999
Q ss_pred EEECcCccceeee
Q 023772 254 FWDLVDASVVAKF 266 (277)
Q Consensus 254 iwd~~~~~~~~~~ 266 (277)
.+|..+|+.+-+.
T Consensus 293 ~~d~~tG~~~W~~ 305 (377)
T TIGR03300 293 ALDRRSGSELWKN 305 (377)
T ss_pred EEECCCCcEEEcc
Confidence 9999999877544
No 263
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=4.1e-11 Score=99.72 Aligned_cols=237 Identities=17% Similarity=0.259 Sum_probs=151.5
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-------CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcE
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHR-------GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQI 84 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v 84 (277)
..+.||...|+.++--.+.+-++++|+|.++++|.++. ..+..++..|..+|.++.|..+.+++++ .|+-+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~gi 806 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGI 806 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcc
Confidence 34679999999988877888889999999999998754 2467788999999999999998888865 58999
Q ss_pred EEEECCCCceeEEeec--ccCceeEEEEecC--CCE-EEEEeCCCcEEEEeCccCCCcceEeecccc-----CcEEEEEe
Q 023772 85 FYWDVSTGRVIRKFRG--HESEVNAVKFNEY--SSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ-----DSVMSVCL 154 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~--h~~~v~~i~~~~~--~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~ 154 (277)
.+||.=-++++..... ..+.+..+...++ ... ++-|+...+|+++|.+.............+ ..+.++..
T Consensus 807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 9999876665543321 1233333444443 333 444588999999998864322111111111 12445556
Q ss_pred cCCeEEEeecCCcEEEEEccCCcccccCC--CCCeeEEEEeCCCCEEEEEecCCeEEE-EECCCCceEEEEeccccceee
Q 023772 155 TKTEIIGGSVDGTVRTFDIRVGRELSDDL--GQPVNCISMSNDGNCILASCLDSTLRL-LDRSTGELLQEYKGHICKSFK 231 (277)
Q Consensus 155 ~~~~~~~g~~d~~i~i~d~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~~-wd~~~~~~~~~~~~~~~~~~~ 231 (277)
.++.++.+-.+|+|.+.|.|+++.+..-. .-....++ .|..+.|+....|.++-+ |-...+......+.-..
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppe---- 961 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE---- 961 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc----
Confidence 67779999999999999999988654211 11111111 345566777778888888 87665532222111100
Q ss_pred eeeEecCCCceEEeecCCCeEEEE
Q 023772 232 TDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 232 ~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
....+..-|.-++++...+.+.+|
T Consensus 962 pahflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 962 PAHFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred chhhhhccCceeEEeccCcEEEEE
Confidence 001112234456666656666666
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.5e-08 Score=86.59 Aligned_cols=208 Identities=14% Similarity=0.033 Sum_probs=120.1
Q ss_pred ceeeccCCcEEEEEEeCCCCE--E-EEEeCCCc--EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-----C
Q 023772 12 NVLKGHEGAVLAARFNGDGNY--C-LSCGKDRT--IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-----D 81 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~--l-~s~s~d~~--v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-----d 81 (277)
..|......+..=+|+|||+. + ++...++. |.+.++..++..... ...+......|+|++++|+..+. |
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 334445566777899999974 2 24444444 555577766543322 23445567899999998876543 2
Q ss_pred CcEEEEECCCC---ceeEEeecccCceeEEEEecCCCEEEEEe-CCCcEEEEeCcc--CCCcceEeeccccCcE--EEEE
Q 023772 82 RQIFYWDVSTG---RVIRKFRGHESEVNAVKFNEYSSVVVSAG-YDQSLRAWDCRS--HSTEPIQIIDSFQDSV--MSVC 153 (277)
Q Consensus 82 ~~v~~wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~--~~~~ 153 (277)
-.+..|++..+ +..+....+........|+||++.|+..+ .+|...+|.... .... ...+......+ ..+.
T Consensus 257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~-~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS-PRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc-eEEeccCCCCccceeEC
Confidence 23455777653 33322222223445679999999777655 467666664321 1111 12122222222 3344
Q ss_pred ecCCeEEEeecC---CcEEEEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEec---CCeEEEEECCCCceEEE
Q 023772 154 LTKTEIIGGSVD---GTVRTFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCL---DSTLRLLDRSTGELLQE 221 (277)
Q Consensus 154 ~~~~~~~~g~~d---~~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---d~~i~~wd~~~~~~~~~ 221 (277)
++++.++..+.+ ..|.+||+..++..... ....+....|+|+|++|+..+. +..|+++|+..++....
T Consensus 336 PDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 336 PDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 455556544332 36889999877543222 1235677899999998875443 35688999987765443
No 265
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=2.5e-09 Score=82.53 Aligned_cols=135 Identities=17% Similarity=0.244 Sum_probs=102.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE--EEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEECC-CCceeE
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK--TYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDVS-TGRVIR 96 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~~-~~~~~~ 96 (277)
-.++.|++.+..+++.-.+|.+.+-+.......+ ..+.|..+.+-++|+..+ +.+++||.|+.+.-||+. .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 3567889999999999999999966544443333 788999999999998644 578999999999999998 445554
Q ss_pred E-eecccCceeEEEEec-CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC
Q 023772 97 K-FRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157 (277)
Q Consensus 97 ~-~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (277)
+ -+-|...|.+|.-+| +...++||++|-.|++||.|+.. +++.. ....+.|..+...|.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-kPl~~-~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-KPLFK-AKVGGGVWRIKHHPE 264 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-Ccccc-CccccceEEEEecch
Confidence 4 566889999998875 57799999999999999998542 22221 223466777776653
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.15 E-value=3.7e-09 Score=83.30 Aligned_cols=210 Identities=13% Similarity=0.250 Sum_probs=133.3
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeeccc------------CceeEEEEecCCC--EEEEE
Q 023772 60 GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHE------------SEVNAVKFNEYSS--VVVSA 120 (277)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~~--~l~s~ 120 (277)
...|.++.|...|.+|+||..+|.|-++.-+... ....++.|. ..|+.+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3568899999999999999999999999765332 233444443 4578888887654 57777
Q ss_pred eCCCcEEEEeCccCCCcc------------------eEeec----------------cccCcEEEEEecCCe-EEEeecC
Q 023772 121 GYDQSLRAWDCRSHSTEP------------------IQIID----------------SFQDSVMSVCLTKTE-IIGGSVD 165 (277)
Q Consensus 121 ~~d~~i~iwd~~~~~~~~------------------~~~~~----------------~~~~~~~~~~~~~~~-~~~g~~d 165 (277)
+.|.+|++|.++...... +.... .|.-.+.+++++.+. ....+.|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 899999999876432111 00111 111223334443322 3334456
Q ss_pred CcEEEEEccCCcc---cccCC-------CCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceEEE----Ee---cc--
Q 023772 166 GTVRTFDIRVGRE---LSDDL-------GQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELLQE----YK---GH-- 225 (277)
Q Consensus 166 ~~i~i~d~~~~~~---~~~~~-------~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~~~----~~---~~-- 225 (277)
=.|.+|+++.... +.... ..-|++..|+|.. +.++.++..|+||+-|++...+-.. |. ..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~ 264 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSS 264 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcc
Confidence 6788899874321 11111 1347888999964 6778889999999999985422111 10 00
Q ss_pred -----ccceeeeeeEecCCCceEEeecCCCeEEEEEC-cCccceeeeccCc
Q 023772 226 -----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL-VDASVVAKFKAHS 270 (277)
Q Consensus 226 -----~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~-~~~~~~~~~~~h~ 270 (277)
.....+.+..|++.|+|+++-.. -+|++||+ .+.+.+..++-|.
T Consensus 265 rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 265 RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehH
Confidence 11122345678899999997542 58999999 5677888877764
No 267
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3.4e-10 Score=89.07 Aligned_cols=156 Identities=17% Similarity=0.269 Sum_probs=103.8
Q ss_pred EEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772 76 ISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT 155 (277)
Q Consensus 76 ~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (277)
++.+.+..|-+-|+++|.. ..|. ..+.|.++.|...+++++.|..+|.|...|++.... +..
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------G~~------ 289 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------GNG------ 289 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc----------CCC------
Confidence 3444555555656555432 1222 445566666666566666666666666666654210 000
Q ss_pred CCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCce---EEEEeccccceee
Q 023772 156 KTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGEL---LQEYKGHICKSFK 231 (277)
Q Consensus 156 ~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~ 231 (277)
... ....++..|+++..-. ++++|.+++.+|+|++||.+.-++ ++.|.||.+....
T Consensus 290 ---------~~a-----------~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 290 ---------WCA-----------QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY 349 (425)
T ss_pred ---------cce-----------EEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence 000 1113455566664333 678899999999999999988777 9999999876666
Q ss_pred eeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
...-+.+.+..+++++.|...|||.++.|.+..+++-.
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 66667788889999999999999999999998888743
No 268
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.10 E-value=8e-10 Score=86.54 Aligned_cols=180 Identities=12% Similarity=0.187 Sum_probs=122.0
Q ss_pred CcEEEEEEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeE
Q 023772 19 GAVLAARFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~ 96 (277)
+.|.-+.|..|..+++ ....|+.|.+|++...+-...+...+.++.++.|+|+++.| .+...|-+|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 5566788888887666 56889999999999888888888888999999999999655 566779999999998876542
Q ss_pred EeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC----CCcceEeecc---ccCcEEEEEecCCeEEEeecCCcEE
Q 023772 97 KFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH----STEPIQIIDS---FQDSVMSVCLTKTEIIGGSVDGTVR 169 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~d~~i~ 169 (277)
++.-+..+..++|++++++.+.++.- |...- .......+.. .......+.++|+ +.-+.
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRr------DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd-------g~~la 194 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRR------DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD-------GNWLA 194 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecc------cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC-------CcEEE
Confidence 22224456889999999998887652 22110 0000000110 0111233444443 23355
Q ss_pred EEEccCCcccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772 170 TFDIRVGRELSDD-LGQPVNCISMSNDGNCILASCLDSTLRLLD 212 (277)
Q Consensus 170 i~d~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd 212 (277)
+||-.....+... .+-.+..++|+|.+++|+.|+.|+.+|+-|
T Consensus 195 Vwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 195 VWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred EecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 6775433332222 234688899999999999999999999866
No 269
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=3.6e-07 Score=78.16 Aligned_cols=220 Identities=12% Similarity=0.082 Sum_probs=124.1
Q ss_pred cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCE--E-EEEeCCC--cEEEEECCCCceeEEeecccCceeEEEEecCCC
Q 023772 41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK--L-ISCGGDR--QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS 115 (277)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l-~t~s~d~--~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~ 115 (277)
.|.+.|...+. .+.+........+=.|+|+++. + ++...++ .|.+.++.+++..+ +...........|+||++
T Consensus 166 ~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCC
Confidence 45555654433 2334334556677799999875 3 2443343 57777888775432 222334445678999998
Q ss_pred EEEEEeC-----CCcEEEEeCccCC-CcceEeeccccCc--EEEEEecCCeEEEee-cCCcEEEEEc--cC-Ccc--ccc
Q 023772 116 VVVSAGY-----DQSLRAWDCRSHS-TEPIQIIDSFQDS--VMSVCLTKTEIIGGS-VDGTVRTFDI--RV-GRE--LSD 181 (277)
Q Consensus 116 ~l~s~~~-----d~~i~iwd~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-~d~~i~i~d~--~~-~~~--~~~ 181 (277)
.|+..+. |..+..|++.... ............. -..+.+++..++..+ .+|...+|.+ .. +.. ...
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 8776553 2234446655321 1222333222112 223444555566444 4565556543 21 111 111
Q ss_pred CCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe-ec--CCCeEEEE
Q 023772 182 DLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG-GS--EDGYIYFW 255 (277)
Q Consensus 182 ~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs--~d~~i~iw 255 (277)
.....+....|+|+|++|+..+.+ ..|++||+.+++... +.... .......++|+|++|+. +. ....|++|
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCC--CCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 223356678999999988876543 369999998887643 33221 11234568899988764 32 24579999
Q ss_pred ECcCccceee
Q 023772 256 DLVDASVVAK 265 (277)
Q Consensus 256 d~~~~~~~~~ 265 (277)
|+..++....
T Consensus 401 dl~~g~~~~L 410 (428)
T PRK01029 401 SLITKKTRKI 410 (428)
T ss_pred ECCCCCEEEe
Confidence 9988765433
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=2.1e-07 Score=87.60 Aligned_cols=196 Identities=15% Similarity=0.225 Sum_probs=126.7
Q ss_pred EEEEEEeCCCCEEEEE-eCCCcEEEEcCCCCeeEEEEecc-----------------CccEEEEEEcC-CCCEEEEEeCC
Q 023772 21 VLAARFNGDGNYCLSC-GKDRTIRLWNPHRGIHIKTYKSH-----------------GREVRDVHVTA-DNSKLISCGGD 81 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h-----------------~~~v~~~~~~~-~~~~l~t~s~d 81 (277)
-..++++++++.|+.+ ...+.|+++|..++. +.++.+- -...+.++++| ++..+++.+.+
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 4678888888766554 445789999987764 3333210 11346799999 45566777788
Q ss_pred CcEEEEECCCCceeEEeecc---------------cCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceE-----
Q 023772 82 RQIFYWDVSTGRVIRKFRGH---------------ESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQ----- 140 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~----- 140 (277)
++|++||..++... .+.+. -...+.++++|+++ ++++-+.++.|++||+.+.......
T Consensus 705 ~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 705 HQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 99999999876542 22111 12345799999987 5666677899999998753211000
Q ss_pred ------eeccc--------cCcEEEEEec--CCeEEEeecCCcEEEEEccCCccccc-C--------------CCCCeeE
Q 023772 141 ------IIDSF--------QDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELSD-D--------------LGQPVNC 189 (277)
Q Consensus 141 ------~~~~~--------~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~~-~--------------~~~~v~~ 189 (277)
.+... ......+.++ ++.+++-..++.|++||..++..... . .-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 00000 0011233333 44566777889999999876543210 0 0124678
Q ss_pred EEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772 190 ISMSNDGNCILASCLDSTLRLLDRSTGEL 218 (277)
Q Consensus 190 ~~~s~~~~~l~~~~~d~~i~~wd~~~~~~ 218 (277)
++++++|+.+++-+.++.|++||+.+++.
T Consensus 864 Iavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 864 LALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999999889888999999999988765
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.06 E-value=4.9e-09 Score=84.04 Aligned_cols=155 Identities=15% Similarity=0.195 Sum_probs=102.3
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEcCCCC----eeEEEEeccCccEEEEEEcCCCCEE---EEEeCCCcEEEEECCCCcee
Q 023772 23 AARFNGDGNYCLSCGKDRTIRLWNPHRG----IHIKTYKSHGREVRDVHVTADNSKL---ISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l---~t~s~d~~v~~wd~~~~~~~ 95 (277)
.+..++++++++.+-.+....+++.... ++...+. -....+++.+..+.... ..++....+.+|....+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~- 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC- 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc-
Confidence 3445677788887766666555553322 2222222 12233444444444433 3445667778887766443
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEcc
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDIR 174 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~~ 174 (277)
....+|-+.+.+++++||++.++|+..|..|++-........ -...-+|...|..++..+++ +++|+.|+++++||++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I-esfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI-ESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDIT 223 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch-hhhccccHhheeeeeeccCceeeecCCCCcEEEEecc
Confidence 356689999999999999999999999999998765322111 01123567778888877666 6999999999999999
Q ss_pred CCcccc
Q 023772 175 VGRELS 180 (277)
Q Consensus 175 ~~~~~~ 180 (277)
+++.+.
T Consensus 224 sgk~L~ 229 (390)
T KOG3914|consen 224 SGKLLD 229 (390)
T ss_pred cCCccc
Confidence 998763
No 272
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=2e-06 Score=70.68 Aligned_cols=218 Identities=11% Similarity=0.083 Sum_probs=134.7
Q ss_pred CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceeEEeeccc-------
Q 023772 40 RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG----------DRQIFYWDVSTGRVIRKFRGHE------- 102 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~----------d~~v~~wd~~~~~~~~~~~~h~------- 102 (277)
++|.+.|..+++.+.++.....+-. + ++|+++.|+.+.. +..|.+||+.+.+.+.++.--.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999998886544443 5 9999998877655 7899999999999988776321
Q ss_pred CceeEEEEecCCCEEEEEe-C-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCC-c--
Q 023772 103 SEVNAVKFNEYSSVVVSAG-Y-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVG-R-- 177 (277)
Q Consensus 103 ~~v~~i~~~~~~~~l~s~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~-~-- 177 (277)
..-...+++|++++++... . +..|-+.|+.+.... ..+.- ++...-+.........-..||......+... +
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--~ei~v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--RMMDV-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--EEEeC-CCCcEEEEecCCccEEEeecCceEEEEecCCCceE
Confidence 2234688999999888765 3 789999998765432 11211 2222222222222333334444443322211 0
Q ss_pred ----ccccC-----CCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCC-----ceEEEEecccc-----ceeeeeeEec
Q 023772 178 ----ELSDD-----LGQPVNCISMSN-DGNCILASCLDSTLRLLDRSTG-----ELLQEYKGHIC-----KSFKTDCCLT 237 (277)
Q Consensus 178 ----~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~-----~~~~~~~~~~ 237 (277)
.+... ...+ .|.+ +|+++..+.+ |+|++.|+... +.+..+..... ..-..-.+++
T Consensus 182 ~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred EeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 11000 0112 4455 8888877766 99999996432 22222221100 1111125678
Q ss_pred CCCceEEeec----------CCCeEEEEECcCccceeeec
Q 023772 238 NSDAHVTGGS----------EDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 238 ~~~~~l~sgs----------~d~~i~iwd~~~~~~~~~~~ 267 (277)
++++.+.... ..+.|.++|..+++.+.++.
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~ 296 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE 296 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe
Confidence 8888777632 22589999999999999887
No 273
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=2e-07 Score=79.08 Aligned_cols=230 Identities=17% Similarity=0.116 Sum_probs=140.0
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCce----
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEV---- 105 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v---- 105 (277)
+..++.++.++.+.-+|..+|+.+-..+... .+.+--.. .+..++.+..++.+..+|.++|+.+.++.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 3456667788999999999998776665432 22221111 24567777889999999999999987765321110
Q ss_pred -eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc---------CcEEEEEecCCeEEEeecCCcEEEEEccC
Q 023772 106 -NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ---------DSVMSVCLTKTEIIGGSVDGTVRTFDIRV 175 (277)
Q Consensus 106 -~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~d~~i~i~d~~~ 175 (277)
.+-.. .+..++.++.+|.+...|..++............ ............++.++.++.+..+|..+
T Consensus 198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 00111 1235666778888888887765432221111000 00011112345677778899999999988
Q ss_pred CcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEE
Q 023772 176 GRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 176 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw 255 (277)
++.+-...-.....+.. .+..+..++.++.+..+|..+++.+.......... .....+ .+.+++.++.||.++..
T Consensus 276 G~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~sp~v--~~g~l~v~~~~G~l~~l 350 (394)
T PRK11138 276 GQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL-LTAPVL--YNGYLVVGDSEGYLHWI 350 (394)
T ss_pred CCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc-ccCCEE--ECCEEEEEeCCCEEEEE
Confidence 87543321111112222 35567788899999999999998765443211111 111111 25567788999999999
Q ss_pred ECcCccceeeecc
Q 023772 256 DLVDASVVAKFKA 268 (277)
Q Consensus 256 d~~~~~~~~~~~~ 268 (277)
|..+|+.+.+.+-
T Consensus 351 d~~tG~~~~~~~~ 363 (394)
T PRK11138 351 NREDGRFVAQQKV 363 (394)
T ss_pred ECCCCCEEEEEEc
Confidence 9999999877763
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.7e-09 Score=86.84 Aligned_cols=208 Identities=14% Similarity=0.100 Sum_probs=150.2
Q ss_pred cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEeecccCceeEEEEecCCCEEEEEeC-CCcEEEEeCccC
Q 023772 59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVST---GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSH 134 (277)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~ 134 (277)
|...|+.+... .-+++++++.||.+|.|--.. -+.+..+..|...|.+++.+-++.++.|.+. |..++++|+.+.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 66666666554 457899999999999997543 1345667889999999999999999999777 999999999875
Q ss_pred CCcceEeeccccCcEEEEEecCC---eEEE-eecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 135 STEPIQIIDSFQDSVMSVCLTKT---EIIG-GSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~-g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
.......+...+..+..+...+. .++. ...++.+.++|-+...+. ...+-.+|.++.+.+.+..+++....|
T Consensus 87 DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~g 166 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISG 166 (558)
T ss_pred chhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccc
Confidence 54433333334444433332221 2333 345688999997755422 224567999999999999898888899
Q ss_pred eEEEEECCC------CceEEEEec-------cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 207 TLRLLDRST------GELLQEYKG-------HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 207 ~i~~wd~~~------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
.|.-|.... .++...++. -.++....+..++|++..+++-+.|..|++++.++|++++.+.
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 999999862 222222221 1334556778899999999998899999999999999887764
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.03 E-value=6.2e-09 Score=83.50 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=97.6
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEeCccCCC--cceEee--ccccCcEEEEEecCCeEEEe---ecCCcEEEEEccCCccc
Q 023772 107 AVKFNEYSSVVVSAGYDQSLRAWDCRSHST--EPIQII--DSFQDSVMSVCLTKTEIIGG---SVDGTVRTFDIRVGREL 179 (277)
Q Consensus 107 ~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~~~~~ 179 (277)
.+..++.+++++.+..+....+++.+.... +..... ......+..+.. ......+ +....+.+|....+...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~~~~di~s~~~~~~~ 145 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDVYSFDILSADSGRCE 145 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeec-cceEEEEeecCCceeeeeecccccCcc
Confidence 345566677777777777766666654322 111110 111111222222 2222222 22334445554433222
Q ss_pred c-cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-ccccceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772 180 S-DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-GHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 180 ~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
. ..+-..+..++|+||+++|+++..|..||+-.+..-..+..|. ||...+ -..+..+ +..|++||-|+++++||+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV--S~isl~~-~~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV--STISLTD-NYLLLSGSGDKTLRLWDI 222 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe--eeeeecc-CceeeecCCCCcEEEEec
Confidence 1 2334578899999999999999999999998887666676665 576443 3333444 456899999999999999
Q ss_pred cCccceeeeccCc
Q 023772 258 VDASVVAKFKAHS 270 (277)
Q Consensus 258 ~~~~~~~~~~~h~ 270 (277)
.+|++++.+..-+
T Consensus 223 ~sgk~L~t~dl~s 235 (390)
T KOG3914|consen 223 TSGKLLDTCDLSS 235 (390)
T ss_pred ccCCcccccchhH
Confidence 9999998776543
No 276
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.03 E-value=1.4e-07 Score=74.26 Aligned_cols=191 Identities=16% Similarity=0.155 Sum_probs=121.3
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe-ecccC---
Q 023772 28 GDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF-RGHES--- 103 (277)
Q Consensus 28 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~-~~h~~--- 103 (277)
+++..++.++.++.|..||..+|+.+-.+.. ..++.... ...+..++.+..++.+..+|.++|+.+.+. .....
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 3566778889999999999999998877765 22222222 234566777778889999999999998874 32211
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc---------CcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 104 EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ---------DSVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 104 ~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
..........+..++.+..++.+..+|++++............ .....+......+..+..++.+..+|+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~ 191 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA 191 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence 1122233333778888888999999998876432222221111 1112333344467777777753334999
Q ss_pred CCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEE
Q 023772 175 VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQE 221 (277)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~ 221 (277)
+++............ .....+..++.++.++.+..||+++|+.+..
T Consensus 192 tg~~~w~~~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 192 TGEKLWSKPISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp TTEEEEEECSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred CCCEEEEecCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 887443222222222 1456777888888999999999999988654
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=8.6e-07 Score=75.47 Aligned_cols=191 Identities=15% Similarity=0.068 Sum_probs=113.6
Q ss_pred CcEEEEEEeCCCCE-EEEEeC---CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEE-EeCC--CcEEEEECCC
Q 023772 19 GAVLAARFNGDGNY-CLSCGK---DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLIS-CGGD--RQIFYWDVST 91 (277)
Q Consensus 19 ~~V~~~~~~~~~~~-l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~s~d--~~v~~wd~~~ 91 (277)
+....-.|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|+++.|+- .+.+ ..|.++|+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999984 554333 3568888998886554443 4455667889999987754 4333 4678888877
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeC-CC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGY-DQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--- 165 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--- 165 (277)
++.. .+..+........|+||++.|+-.+. .+ .|.+.|+......++. .... ....+++++..++.....
T Consensus 267 g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-~~g~--~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 267 KTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-FHGK--NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred CcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-cCCC--cCceECCCCCEEEEEEcCCCc
Confidence 7643 34434333344679999987666553 33 4666676554332221 1111 123455566665543332
Q ss_pred ------CcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCC---eEEEEECC
Q 023772 166 ------GTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDS---TLRLLDRS 214 (277)
Q Consensus 166 ------~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~~wd~~ 214 (277)
..|.+.|+..+...............|+|||+.|+....++ .+.+.++.
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 25777787766432221122333578999999876655432 35566664
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.00 E-value=2.3e-09 Score=58.82 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=37.0
Q ss_pred CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
++++.++++|..+|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 279
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.99 E-value=1.9e-08 Score=86.74 Aligned_cols=238 Identities=19% Similarity=0.285 Sum_probs=153.6
Q ss_pred EEEEEEeCCC---CEEEEEeCCCcEEEEcCCC---CeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCC-
Q 023772 21 VLAARFNGDG---NYCLSCGKDRTIRLWNPHR---GIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTG- 92 (277)
Q Consensus 21 V~~~~~~~~~---~~l~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~- 92 (277)
|-.+.|++.. .++++.+. ....+|++.. ...-..+.+|...|+.+.|.+.+. .+++++.|..+..||+.+-
T Consensus 70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hcceecccCCCCceeEEecCc-chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 6678888743 35555554 5668898653 233456778999999999998765 6789999999999999864
Q ss_pred ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEEEeecCCcEE
Q 023772 93 RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEIIGGSVDGTVR 169 (277)
Q Consensus 93 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~d~~i~ 169 (277)
.++..+..-...-..++|+-....+...+....|++||++.+.. +......+...+..+.+.. ..+++.+.|++++
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~-pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST-PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc-ceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 34555544444556789987666666667788899999987643 3444445555666665543 3488999999999
Q ss_pred EEEccCCccccc---CCCCCeeEEEEeCCCCE-----------EEEEecCCeEEEEECCC-CceEEEEeccccceeee--
Q 023772 170 TFDIRVGRELSD---DLGQPVNCISMSNDGNC-----------ILASCLDSTLRLLDRST-GELLQEYKGHICKSFKT-- 232 (277)
Q Consensus 170 i~d~~~~~~~~~---~~~~~v~~~~~s~~~~~-----------l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~-- 232 (277)
.||.....+... ....++.--.+-|-|.- +..---+.....|+..+ .+++..|.||...+.-.
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 999875533221 22334544445553321 11111222334455543 46789999996432111
Q ss_pred ----eeEe--cCCCceEEeecCCCeEEEEECcCc
Q 023772 233 ----DCCL--TNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 233 ----~~~~--~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
.|.+ ...+.-|++-|.|..+|+|-+.+.
T Consensus 308 R~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred hhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 1111 122446999999999999998763
No 280
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=6.2e-06 Score=68.75 Aligned_cols=218 Identities=14% Similarity=0.158 Sum_probs=134.2
Q ss_pred CcEEEEcC--CCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eeEEeecccCceeE
Q 023772 40 RTIRLWNP--HRGIHI--KTYKSHGREVRDVHVTADNSKLISCGG----DRQIFYWDVSTG--R--VIRKFRGHESEVNA 107 (277)
Q Consensus 40 ~~v~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~----d~~v~~wd~~~~--~--~~~~~~~h~~~v~~ 107 (277)
+.|.+|+. .+++.. ..+. .......++++|++++|+++.. ++.|..|++... + .+.+..........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 68888766 555432 2222 3456778999999999998876 578988887653 3 33334323344456
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEeCccCC-Ccce-Eeec----------cccCcEEEEEecC--CeEEEe-ecCCcEEEE
Q 023772 108 VKFNEYSSVVVSAGY-DQSLRAWDCRSHS-TEPI-QIID----------SFQDSVMSVCLTK--TEIIGG-SVDGTVRTF 171 (277)
Q Consensus 108 i~~~~~~~~l~s~~~-d~~i~iwd~~~~~-~~~~-~~~~----------~~~~~~~~~~~~~--~~~~~g-~~d~~i~i~ 171 (277)
+++++++++++.+.. +|++.++++.... .... .... ........+.+++ +.+++. -....|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 999999999998875 8999999987531 1111 1110 0112344555554 445543 334579999
Q ss_pred EccCCcc-c------ccCCCCCeeEEEEeCCCCEEEEE-ecCCeEEEEECC--CCce--EEEEecc----ccceeeeeeE
Q 023772 172 DIRVGRE-L------SDDLGQPVNCISMSNDGNCILAS-CLDSTLRLLDRS--TGEL--LQEYKGH----ICKSFKTDCC 235 (277)
Q Consensus 172 d~~~~~~-~------~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~--~~~~--~~~~~~~----~~~~~~~~~~ 235 (277)
++..... + ....+.-.+.+.|+|+++++... ..++.|.+|++. .++. ++..... ..........
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 9875431 1 22445678999999999987554 567789999987 4432 2333211 1111345567
Q ss_pred ecCCCceEEee-cCCCeEEEEECc
Q 023772 236 LTNSDAHVTGG-SEDGYIYFWDLV 258 (277)
Q Consensus 236 ~~~~~~~l~sg-s~d~~i~iwd~~ 258 (277)
++|++++|.++ -.++.|-+|+++
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EecCCCEEEEEeccCCEEEEEEEe
Confidence 89999987764 457789999993
No 281
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.97 E-value=2.7e-09 Score=58.59 Aligned_cols=39 Identities=33% Similarity=0.788 Sum_probs=36.9
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
++++.++.+|..+|++++|+|++++|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 282
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.96 E-value=8.2e-09 Score=88.92 Aligned_cols=252 Identities=18% Similarity=0.238 Sum_probs=152.8
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCC-CCeeEEEEeccCc--cEEEEEEcCCC---CEEEEEeCCCcEEEEECC
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPH-RGIHIKTYKSHGR--EVRDVHVTADN---SKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~--~v~~~~~~~~~---~~l~t~s~d~~v~~wd~~ 90 (277)
-.+++..+..+|.|+-++.++.-|- .+-|+. .+.+.+.+. |.. .|-...|++.. ..+++.+.. ...+|++.
T Consensus 23 v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA 99 (1081)
T KOG0309|consen 23 VDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLA 99 (1081)
T ss_pred ecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhh
Confidence 3567888999999999999888654 455543 333333332 322 35566676543 235554443 45678875
Q ss_pred C--Cc-eeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeec
Q 023772 91 T--GR-VIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSV 164 (277)
Q Consensus 91 ~--~~-~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~ 164 (277)
. .+ .-..+.+|...|+.+-|+++. ..+++++.|..+..||+++... ++............+.++.. .+++.+-
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhcc
Confidence 3 22 334467899999999999874 4789999999999999998643 45555544455556666532 2444555
Q ss_pred CCcEEEEEccCCcccccC---CCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecC--
Q 023772 165 DGTVRTFDIRVGRELSDD---LGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTN-- 238 (277)
Q Consensus 165 d~~i~i~d~~~~~~~~~~---~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (277)
.+.|++||++.+...... +-..++.++|... ...+.+++.|++++.||.........+..-.+.... ..++-|
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw-~~r~~Pfg 257 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIW-RGRYLPFG 257 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcce-eccccccC
Confidence 678999999987654322 2345666777552 345788999999999998654332222211111111 112222
Q ss_pred CCceEEe--e-------cCCCeEEEEECcC-ccceeeeccCccee
Q 023772 239 SDAHVTG--G-------SEDGYIYFWDLVD-ASVVAKFKAHSLVV 273 (277)
Q Consensus 239 ~~~~l~s--g-------s~d~~i~iwd~~~-~~~~~~~~~h~~~v 273 (277)
+|.+++- | -.++.-..|+..+ ...++.|.||+..|
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 2222221 1 1122333455444 36789999998765
No 283
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.93 E-value=6e-08 Score=85.53 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=127.0
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772 29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV 108 (277)
Q Consensus 29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i 108 (277)
++..++-|+--..+..+|..+.+..+...-..+.|.-+.. +++.+.+|...|+|.+-|..+-+.+.++..|++.|.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 3556777777788888998888777666544444544443 57889999999999999999999999999999999755
Q ss_pred EEecCCCEEEEEeC---------CCcEEEEeCccCCC-cceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc---C
Q 023772 109 KFNEYSSVVVSAGY---------DQSLRAWDCRSHST-EPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR---V 175 (277)
Q Consensus 109 ~~~~~~~~l~s~~~---------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~---~ 175 (277)
+ -.|++|++||. |..|++||+|.... .+++... .+..+.....-...+++.+..|...+-|.. .
T Consensus 224 D--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~-~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 D--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY-GPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred e--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc-CchhhhhcccccceEEEEecccceeeccccccCC
Confidence 4 55889999974 78899999986432 2222211 111111111123457788888888887732 2
Q ss_pred Cc---ccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 176 GR---ELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 176 ~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
.. ......+..+..++++++|+.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 11 111122344888999999999999999999999973
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.91 E-value=1.7e-09 Score=94.81 Aligned_cols=199 Identities=17% Similarity=0.193 Sum_probs=143.0
Q ss_pred eEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCC--CcEEEE
Q 023772 52 HIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYD--QSLRAW 129 (277)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--~~i~iw 129 (277)
..++|+.|...-++++|+...+.|+.|+..|.|+++++.+|....++.+|.++|+-+.-+.++.++++.+.- .-..+|
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence 345778888999999999999999999999999999999999999999999999999999998877665432 246788
Q ss_pred eCccCCCcceEeeccccCcEEEEEecCCe--EEEeecCCcEEEEEccCCcccccCC------CCCeeEEEEeCCCCEEEE
Q 023772 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRVGRELSDDL------GQPVNCISMSNDGNCILA 201 (277)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~ 201 (277)
+..+. ..+...+. ....+.++... -+.|..-....+||+.++..+.+.. +..-++..|+|+...++
T Consensus 1173 ~~~s~-~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1173 DASST-GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred ccccc-cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 87642 11221111 12233443322 2345555678899999887654422 22347889999988654
Q ss_pred EecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 202 SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 202 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
.|| .+||++..+.++.|..-. ....-.|.|.|.-++..++ |||+++.++++....
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft---~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFT---DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS 1301 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhhe---ecccccccCCCceEEeech-----hhhhHHHHHHhcCcc
Confidence 467 579999888887775432 2223357888888887664 799999888776553
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=9.1e-08 Score=83.09 Aligned_cols=254 Identities=14% Similarity=0.167 Sum_probs=159.6
Q ss_pred ccccceeeccCCcEEEEEEeCC------------CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC---C
Q 023772 8 RTEANVLKGHEGAVLAARFNGD------------GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD---N 72 (277)
Q Consensus 8 ~~~~~~l~~H~~~V~~~~~~~~------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~ 72 (277)
-+..+.+.-|+..|+.++|.|. .-+|+++.-.|.|.+||...+..+..++.|..++..+.|-+. .
T Consensus 45 ~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~S 124 (1062)
T KOG1912|consen 45 LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDS 124 (1062)
T ss_pred hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcc
Confidence 3455667889999999999763 125667888899999999998888899999999999998753 3
Q ss_pred -CEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEEEeCCCcEEEEeCccCC-----CcceEeeccc
Q 023772 73 -SKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVSAGYDQSLRAWDCRSHS-----TEPIQIIDSF 145 (277)
Q Consensus 73 -~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~~ 145 (277)
..|+.-....++.+|+..+|+....+........+..+.|.+ +.+.--+..|.+.+-+.-... .+.+++...+
T Consensus 125 rd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~ 204 (1062)
T KOG1912|consen 125 RDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDH 204 (1062)
T ss_pred hheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCc
Confidence 456666777899999999999998887777777888888853 344444556666666542211 1122222221
Q ss_pred cC-------------------c------EEEEEecC--CeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCC-
Q 023772 146 QD-------------------S------VMSVCLTK--TEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSND- 195 (277)
Q Consensus 146 ~~-------------------~------~~~~~~~~--~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~- 195 (277)
.+ . +..+.+.| ...+-....+.+.++|++-...+.. .....+.-+.+-|+
T Consensus 205 Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~ 284 (1062)
T KOG1912|consen 205 SDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDP 284 (1062)
T ss_pred cchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCC
Confidence 11 0 01112222 2344556788899999876654432 11222334455554
Q ss_pred -CCEEEEEecCCeEEEEECCC----------------CceEEEEecccc-ceeeeeeEecCCCceEEeecCCCeEEEEEC
Q 023772 196 -GNCILASCLDSTLRLLDRST----------------GELLQEYKGHIC-KSFKTDCCLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 196 -~~~l~~~~~d~~i~~wd~~~----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
...|++...||.+.+|-.+. +++...+...+. ..++..+|.+. ...++.--.+|...+|.+
T Consensus 285 ~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~-~sa~avl~s~g~~~~w~l 363 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPST-PSALAVLYSSGDSTFWQL 363 (1062)
T ss_pred CcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCC-hhhhhhhhhcchhHHHhh
Confidence 45799999999999998654 222222222211 12223334332 223333345777888999
Q ss_pred cCccc
Q 023772 258 VDASV 262 (277)
Q Consensus 258 ~~~~~ 262 (277)
.+|+.
T Consensus 364 ~~~ri 368 (1062)
T KOG1912|consen 364 SNGRI 368 (1062)
T ss_pred hcCCc
Confidence 87543
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=2e-07 Score=80.51 Aligned_cols=250 Identities=13% Similarity=0.138 Sum_probs=160.3
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe---------------eEEEEeccCccEEEEEEcCCCCEEEEEeCCCc
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI---------------HIKTYKSHGREVRDVHVTADNSKLISCGGDRQ 83 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~---------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~ 83 (277)
....|+.|+.+..+++.||.||.+++-.+.+.. .-.++++|++.|.-+.|+.++++|-|+..+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 456799999999999999999999998754321 12467899999999999999999999999999
Q ss_pred EEEEECCCCceeEE--eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eE
Q 023772 84 IFYWDVSTGRVIRK--FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EI 159 (277)
Q Consensus 84 v~~wd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 159 (277)
|.+|-+-.|.=... -...++-|.++.|+.+|..+...-.||.|.+=.+..+..... .+... -...+.++++ .+
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK-eLkg~--~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK-ELKGQ--LLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch-hcchh--eccceeecccHHHH
Confidence 99998765532111 122456788999999999988888888887755443211000 00100 1112333333 24
Q ss_pred EEeecCCcEEEEEccCCccc-------------ccCCCCCeeEEEEe--------CCCCEEEEEecCCeEEEEECCCC-c
Q 023772 160 IGGSVDGTVRTFDIRVGREL-------------SDDLGQPVNCISMS--------NDGNCILASCLDSTLRLLDRSTG-E 217 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~-------------~~~~~~~v~~~~~s--------~~~~~l~~~~~d~~i~~wd~~~~-~ 217 (277)
+.+-.+|.+.+||....... ....+..+..+.|. |+-..|+.+-..|.+.|..-.+. .
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 45566788889986543221 11122334444442 46778888888998888765432 2
Q ss_pred eEEEEeccccceeeeeeEecCCCceEEeecCC---------CeEEEEECcCccceeeeccCcceeEee
Q 023772 218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSED---------GYIYFWDLVDASVVAKFKAHSLVVKLL 276 (277)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---------~~i~iwd~~~~~~~~~~~~h~~~v~~~ 276 (277)
++-.=.+ ...+...++++|..+|.++.| +.|.+|..- |+.+..|+....-|+.|
T Consensus 252 Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~l 314 (1189)
T KOG2041|consen 252 PVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGL 314 (1189)
T ss_pred CeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeee
Confidence 2211112 233445678888888876432 256666543 77777777665555443
No 287
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.89 E-value=1.2e-06 Score=67.99 Aligned_cols=192 Identities=13% Similarity=0.106 Sum_probs=114.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEec-------cCccEEEEEEcCC------CCEEEEEeCCCcEEEE
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKS-------HGREVRDVHVTAD------NSKLISCGGDRQIFYW 87 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~------~~~l~t~s~d~~v~~w 87 (277)
=+.++||||+.+||.+...|+|+++|+.... +..+.. -..+|..+.|.+- ...|+.-..+|.++-+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 3579999999999999999999999986433 333322 1245666666532 2246666778888777
Q ss_pred ECCCC-----ceeEE--eec-ccCceeEEEEecCCCEEEEEeCCCcE-EEEeCccCCCcceEeeccccCcEEEEEe---c
Q 023772 88 DVSTG-----RVIRK--FRG-HESEVNAVKFNEYSSVVVSAGYDQSL-RAWDCRSHSTEPIQIIDSFQDSVMSVCL---T 155 (277)
Q Consensus 88 d~~~~-----~~~~~--~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~ 155 (277)
-+..+ +...+ +.. +...|+++.++|..++|+.||....= ..+. .....+.+..+ .
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~-------------a~~~GLtaWRiL~~~ 191 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK-------------ASSCGLTAWRILSDS 191 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc-------------ccccCceEEEEcCCC
Confidence 65321 22233 333 37799999999998888877653320 0000 00011111111 1
Q ss_pred CCe-EEEeecCC------cEEEEEccCCcccc--cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772 156 KTE-IIGGSVDG------TVRTFDIRVGRELS--DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI 226 (277)
Q Consensus 156 ~~~-~~~g~~d~------~i~i~d~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 226 (277)
|.. .++...|+ +..+|.+.+.+... .....-|..|..||+|+.|++...+|.|.+|++-+-++.+.+..++
T Consensus 192 Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 192 PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 111 11111111 11233332222221 1234578999999999999999999999999998877777776543
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=1.5e-07 Score=71.80 Aligned_cols=199 Identities=14% Similarity=0.124 Sum_probs=113.4
Q ss_pred eeccCC-cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe------------eEEEEeccCccEEEEEEcCCCCEEEEEeC
Q 023772 14 LKGHEG-AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI------------HIKTYKSHGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 14 l~~H~~-~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~------------~~~~~~~h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
..+|.+ .|+.+.|..+ ..|+++..++.+......++. +.+.+..|+++-.+-+.+--++.++++..
T Consensus 31 i~~~~d~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 31 IMQHADVKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred cccccceEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 345555 1444555433 455666666666665543322 23444455554444444445678999999
Q ss_pred CCcEEEEECCCCcee-EEeecccCceeEEEEecCCCEEEEEe-----CCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772 81 DRQIFYWDVSTGRVI-RKFRGHESEVNAVKFNEYSSVVVSAG-----YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154 (277)
Q Consensus 81 d~~v~~wd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
||.+.+++.+.-..+ +....-.....+..+...++.+.++. .-+..+.|+++........ ......+.+++.
T Consensus 110 dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~ 187 (319)
T KOG4714|consen 110 DGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPS--KKALDAVTALCS 187 (319)
T ss_pred CceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccc--ccccccchhhhC
Confidence 999999998752111 11111111122233334455554432 1234555665432211111 111223455544
Q ss_pred cC--C-eEEEeecCCcEEEEEccCCccc---ccCCCCCeeEEEEeC-CCCEEEEEecCCeEEEEECCC
Q 023772 155 TK--T-EIIGGSVDGTVRTFDIRVGREL---SDDLGQPVNCISMSN-DGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 155 ~~--~-~~~~g~~d~~i~i~d~~~~~~~---~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~ 215 (277)
.| + .+.+|+.||.+-+||.+...-+ ...+..+++.+-|+| ++..|+++++||.+--||..+
T Consensus 188 hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 188 HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 43 2 3778999999999999876322 123567899999999 457899999999999999874
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=7.2e-07 Score=74.05 Aligned_cols=236 Identities=14% Similarity=0.225 Sum_probs=138.6
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCc---------------EEEEcCCCCeeEEEEeccCcc--EE-EEEEcCCCCEEEEEeC
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRT---------------IRLWNPHRGIHIKTYKSHGRE--VR-DVHVTADNSKLISCGG 80 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~---------------v~iwd~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~l~t~s~ 80 (277)
..|..+.|+|.+.||.|=+.... +.+||..+|..+..|.....+ .+ -+.|+-+.++.+-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 45778899999999998765544 999999999999888876655 44 56777776665443 2
Q ss_pred CCcEEEEECCCCcee-EEeecc-cCceeEEEEecCCC--EEEE-----EeCCCcEEEEeCccCCCcc-------------
Q 023772 81 DRQIFYWDVSTGRVI-RKFRGH-ESEVNAVKFNEYSS--VVVS-----AGYDQSLRAWDCRSHSTEP------------- 138 (277)
Q Consensus 81 d~~v~~wd~~~~~~~-~~~~~h-~~~v~~i~~~~~~~--~l~s-----~~~d~~i~iwd~~~~~~~~------------- 138 (277)
...++++++ ++... ..+..- ...+..-.++|.++ .|+. .+.++.+++|.+.......
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 345777775 22211 001000 12233333443311 1111 2344445555443211000
Q ss_pred -------------------------------------eEeeccccCcEEEEEecCC--e--EEEeecCCcEEEEEccCCc
Q 023772 139 -------------------------------------IQIIDSFQDSVMSVCLTKT--E--IIGGSVDGTVRTFDIRVGR 177 (277)
Q Consensus 139 -------------------------------------~~~~~~~~~~~~~~~~~~~--~--~~~g~~d~~i~i~d~~~~~ 177 (277)
+.......++|..+.+.+. . ++.|-.+-.+.++|++..-
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl 309 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL 309 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccce
Confidence 0000022345556666443 2 4455667777788877652
Q ss_pred ccccCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCc-eEEEEeccccceeeeeeEecCCCceEEeec------
Q 023772 178 ELSDDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGE-LLQEYKGHICKSFKTDCCLTNSDAHVTGGS------ 247 (277)
Q Consensus 178 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs------ 247 (277)
......+.=+.+.|+|.+++++.++.| |.+-+||..... ++..+.+.. ...|-++|++.++.+..
T Consensus 310 -~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n----~s~~~wspd~qF~~~~~ts~k~~ 384 (561)
T COG5354 310 -RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN----TSYCDWSPDGQFYDTDTTSEKLR 384 (561)
T ss_pred -EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC----ceEeeccCCceEEEecCCCcccc
Confidence 222234455778899999999987765 478899986543 344565542 23366899998877652
Q ss_pred CCCeEEEEECcCcc
Q 023772 248 EDGYIYFWDLVDAS 261 (277)
Q Consensus 248 ~d~~i~iwd~~~~~ 261 (277)
.|..|+|||+.-..
T Consensus 385 ~Dn~i~l~~v~g~~ 398 (561)
T COG5354 385 VDNSIKLWDVYGAK 398 (561)
T ss_pred cCcceEEEEecCch
Confidence 48899999987543
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.87 E-value=6.2e-07 Score=74.45 Aligned_cols=236 Identities=16% Similarity=0.205 Sum_probs=152.3
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC---------------
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD--------------- 81 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d--------------- 81 (277)
-.-++..++|||.|.+|++.-. ..|.+|....+..+..+. | ..|..+.|+|++++|.|=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 4567899999999999998555 678999977765555554 2 589999999999999985433
Q ss_pred CcEEEEECCCCceeEEeecccCc--ee-EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-
Q 023772 82 RQIFYWDVSTGRVIRKFRGHESE--VN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT- 157 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h~~~--v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (277)
..+.+||..+|.++..+..-..+ .+ -+.|+-++++++-. ....+.++++ +.+.............+..+.++|.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCC
Confidence 35999999999999998876665 55 67888887776655 3456899986 3322211111111234555555543
Q ss_pred ---eEE-----EeecCCcEEEEEccCCcccccC--CCCCeeEEEEeCCCCEEEEEe-----------cCCeEEEEECCCC
Q 023772 158 ---EII-----GGSVDGTVRTFDIRVGRELSDD--LGQPVNCISMSNDGNCILASC-----------LDSTLRLLDRSTG 216 (277)
Q Consensus 158 ---~~~-----~g~~d~~i~i~d~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~-----------~d~~i~~wd~~~~ 216 (277)
.++ .++.++.+++|.+..+..+... ....--.+.|.+.|++|+.-- .+..++|++++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 122 2466778888888766544332 122223467788887765421 2356788888643
Q ss_pred ceEEEEeccccceeeeeeEecCCCce--EEeecCCCeEEEEECcCc
Q 023772 217 ELLQEYKGHICKSFKTDCCLTNSDAH--VTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~--l~sgs~d~~i~iwd~~~~ 260 (277)
.+ ..-.+-. ..+-+.++.|.++. +++|-.+-.+.++|++..
T Consensus 266 ~i-~V~~~~~--~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 266 SI-PVEKDLK--DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred cc-ceecccc--ccceeeeecccCCceeEEecccccceeecccccc
Confidence 22 2211211 23455667776554 445678888888888754
No 291
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.5e-07 Score=74.78 Aligned_cols=232 Identities=16% Similarity=0.224 Sum_probs=139.9
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----------CcEEEEECC
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----------RQIFYWDVS 90 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----------~~v~~wd~~ 90 (277)
+-+.|||.|.||+|-=. .-|.+|-..+-..++.|. | ..|.-+.|+|+.+||+|=|.. ..+.+||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHK-QGIALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEec-cceeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 45899999999999765 668999877655566664 4 478999999999999996532 579999999
Q ss_pred CCceeEEeec--ccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCCC--------cceEeeccccC-cEEE-------
Q 023772 91 TGRVIRKFRG--HESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHST--------EPIQIIDSFQD-SVMS------- 151 (277)
Q Consensus 91 ~~~~~~~~~~--h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~-~~~~------- 151 (277)
+|...++|.. ....++ -..|+.|++++|--..| +|.||+..+... ..+..+...+. .+.+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 9999888876 233333 34688899998877664 588887543211 00111110000 0000
Q ss_pred --------EE---------------------e--cCCeEEE----------eecCCcEEEEEccCCcccc--cCCCCCee
Q 023772 152 --------VC---------------------L--TKTEIIG----------GSVDGTVRTFDIRVGRELS--DDLGQPVN 188 (277)
Q Consensus 152 --------~~---------------------~--~~~~~~~----------g~~d~~i~i~d~~~~~~~~--~~~~~~v~ 188 (277)
+. + +++.|.. .+.-..+.|+.++...... ......|-
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 00 0 0111100 0000112222222211110 12345677
Q ss_pred EEEEeCCCCEEEEEec---CCeEEEEECCCC----ceEEEEeccccceeeeeeEecCCCceEEee---cCCCeEEEEECc
Q 023772 189 CISMSNDGNCILASCL---DSTLRLLDRSTG----ELLQEYKGHICKSFKTDCCLTNSDAHVTGG---SEDGYIYFWDLV 258 (277)
Q Consensus 189 ~~~~s~~~~~l~~~~~---d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg---s~d~~i~iwd~~ 258 (277)
..+|-|.|+.+++-+. ..++.+|-+.+. +++..+.. .......++|.|++++.+ |..|.+.++|..
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 8899999988766443 346888887632 33444432 223445689999997764 678999999998
Q ss_pred Ccc
Q 023772 259 DAS 261 (277)
Q Consensus 259 ~~~ 261 (277)
-..
T Consensus 526 ~a~ 528 (698)
T KOG2314|consen 526 YAD 528 (698)
T ss_pred hhh
Confidence 533
No 292
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=4.3e-07 Score=69.64 Aligned_cols=187 Identities=11% Similarity=0.082 Sum_probs=116.5
Q ss_pred CCCcEEEEECCCCc--eeEEeecccCceeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE---
Q 023772 80 GDRQIFYWDVSTGR--VIRKFRGHESEVNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV--- 149 (277)
Q Consensus 80 ~d~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--- 149 (277)
....+.+|+.-+.. .+..+ ..+.|.| ..-+|+.|+.-|...+|.+.+.+. ..++...+...+
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~-h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG-HLYQCDVSNNDVTLV 121 (344)
T ss_pred ceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCccc-ceeeecccccchhhh
Confidence 34456777765432 33322 2345544 345788899999999999876433 333333333322
Q ss_pred EEEEecCCeEEEeecCCcEEEEEccCCcccccCCC--CCeeEEEEeCCCCEEEEEecCCeEEEEECCC-C-ceEEEEecc
Q 023772 150 MSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLG--QPVNCISMSNDGNCILASCLDSTLRLLDRST-G-ELLQEYKGH 225 (277)
Q Consensus 150 ~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~-~~~~~~~~~ 225 (277)
...+...-.+..++.|.++++.++..+..-...+. -.++++.++++++++++.+....|..|.+.. + ..+..+...
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 12222334467788999999998865432222222 2478999999999999999999999998743 2 333323222
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccce-----eeeccCcceeEe
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVV-----AKFKAHSLVVKL 275 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~ 275 (277)
. ..-....+++..+..+|+++.||.+.|||++..... .+-..|.+++|.
T Consensus 202 t-~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 202 T-SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV 255 (344)
T ss_pred c-CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence 1 111233457788889999999999999999875332 222246777663
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.85 E-value=4.7e-06 Score=68.99 Aligned_cols=121 Identities=16% Similarity=0.232 Sum_probs=98.9
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCC-cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDR-TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.+.-+|.+.|.-.++..+++-++-|..|| .+-|+|..+++ .+.++..-+.|.++..+++|++++.+.....+-+.|++
T Consensus 353 ~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 353 SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 33458899999999999888889999999 89999988775 45666677899999999999999999888899999999
Q ss_pred CCceeEEeecccCceeEEEEecCCCEEEEEeCCC----cEEEEeCcc
Q 023772 91 TGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ----SLRAWDCRS 133 (277)
Q Consensus 91 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~----~i~iwd~~~ 133 (277)
++.+..-=+...+-|....|+|+++.+|-+--+| .|+++|+..
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 9986544444566788999999999988775444 578887654
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.84 E-value=7e-09 Score=81.83 Aligned_cols=118 Identities=18% Similarity=0.294 Sum_probs=95.4
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCC-----eeEEEEeccCccEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRG-----IHIKTYKSHGREVRDVHVTA-DNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~d~~v~~wd~~ 90 (277)
.++.|.++.|...++++..|...|.|..+|++.. .+...+ -|...|+++.... ++++|++.+.+|+|++||+.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4567899999999999999999999999998764 233333 4888999998877 78999999999999999998
Q ss_pred CCce---eEEeecccCceeEE--EEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 91 TGRV---IRKFRGHESEVNAV--KFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 91 ~~~~---~~~~~~h~~~v~~i--~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
--++ ++++.+|.+.-.-+ -+.+....+++++.|...++|.+..+.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 6666 89999996543323 334566788999999999999998654
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=2.1e-05 Score=61.18 Aligned_cols=233 Identities=14% Similarity=0.164 Sum_probs=126.1
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEcCCCC--eeEEEE---eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 24 ARFNGDGNYCLSCGKDRTIRLWNPHRG--IHIKTY---KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~---~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
++.+.+|+.||. -.|..|.|=..+.. ..+... +.....-+.++|+|++..|+.+...|+|++||+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 456678888766 44667777654331 222222 22334568899999999999999999999999975433 222
Q ss_pred ec-------ccCceeEEEEecC------CCEEEEEeCCCcEEEEeCccCCCc-----ceEee-ccccCcEEEEEecCCe-
Q 023772 99 RG-------HESEVNAVKFNEY------SSVVVSAGYDQSLRAWDCRSHSTE-----PIQII-DSFQDSVMSVCLTKTE- 158 (277)
Q Consensus 99 ~~-------h~~~v~~i~~~~~------~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~- 158 (277)
.. -...|.++.|.+- ...|+.-..+|.++-|-+...... ....+ ...+..+.++..++.+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 2356677777543 224555678888887765322111 11112 2234556666666543
Q ss_pred -EEEeecCCcEEEEEccCCcccccCCCC---CeeEEEEeCCCCEEEEEecCCe------EEEEECCCCceEEEEeccccc
Q 023772 159 -IIGGSVDGTVRTFDIRVGRELSDDLGQ---PVNCISMSNDGNCILASCLDST------LRLLDRSTGELLQEYKGHICK 228 (277)
Q Consensus 159 -~~~g~~d~~i~i~d~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~------i~~wd~~~~~~~~~~~~~~~~ 228 (277)
+++|+.... ..+ ....... ..+-+.-+|..+. ++..+|+. ..+|.+-+.+... ..+. ..
T Consensus 161 LLlVgG~~~~------~~~--~s~a~~~GLtaWRiL~~~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~fs-~~~~-~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQN------QDG--MSKASSCGLTAWRILSDSPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFFS-RQGQ-EQ 229 (282)
T ss_pred EEEEeccCCC------CCc--cccccccCceEEEEcCCCCcEEE-ccccCccccccccccceeeccceeeee-cccc-CC
Confidence 445543321 000 0000000 1111111222211 12222221 1233333222211 1111 12
Q ss_pred eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
..+...++||||.+||+-+.+|.|.+|++.+.++..+.+.+
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 33455678999999999999999999999999888777654
No 296
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.81 E-value=3.6e-06 Score=71.49 Aligned_cols=223 Identities=13% Similarity=0.135 Sum_probs=133.7
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc----------cEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR----------EVR-DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----------~v~-~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
+..++.++.++.+.-+|..+|+.+-..+.... .+. .... .+..++.++.++.+..+|.++|+.+.+.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55777788889999999999987765543220 000 1111 3567777888999999999999988776
Q ss_pred ecccCceeE-EEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccC---cEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 99 RGHESEVNA-VKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQD---SVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 99 ~~h~~~v~~-i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
.... ++.+ .... +..++.+..++.+..+|..+++............ ...+.......++.++.++.+..+|..
T Consensus 147 ~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 5432 2221 1111 3456667788999999987654322111110000 000111123456777888999888988
Q ss_pred CCcccccC-CCCC--------eeEEEEeC--CCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceE
Q 023772 175 VGRELSDD-LGQP--------VNCISMSN--DGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHV 243 (277)
Q Consensus 175 ~~~~~~~~-~~~~--------v~~~~~s~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (277)
+++..-.. ...+ ...+.-+| .+..++.++.++.++.+|..+|+.+....-.. . ... ...+..+
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~--~~~--~~~~~~v 297 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--V--NDF--AVDGGRI 297 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--c--cCc--EEECCEE
Confidence 77643221 1100 01111122 24567777889999999999998876543211 0 111 1235567
Q ss_pred EeecCCCeEEEEECcCccce
Q 023772 244 TGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 244 ~sgs~d~~i~iwd~~~~~~~ 263 (277)
..++.||.++..|..+|+.+
T Consensus 298 y~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEEcCCCeEEEEECCCCcEE
Confidence 77788999999999988765
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3.6e-07 Score=73.72 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=75.2
Q ss_pred EEEEcCCCCeeEEEEeccCccEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-CEEEE
Q 023772 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNS-KLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-SVVVS 119 (277)
Q Consensus 42 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s 119 (277)
+++.+..+-+....+..|...|.+++|+|.++ ++..++-+.+|++.|+++..++.++..+ .++++++|.-+. +++..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 44444444444445566778899999999776 7888999999999999999999999887 899999998764 56777
Q ss_pred EeCCCcEEEEeCccCC
Q 023772 120 AGYDQSLRAWDCRSHS 135 (277)
Q Consensus 120 ~~~d~~i~iwd~~~~~ 135 (277)
|..+|.|.+||++...
T Consensus 254 Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPE 269 (463)
T ss_pred eccCceEEEEEccCCC
Confidence 8889999999998754
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=3.3e-05 Score=61.18 Aligned_cols=208 Identities=16% Similarity=0.179 Sum_probs=130.1
Q ss_pred EEEEEeC-CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEee
Q 023772 22 LAARFNG-DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT-ADNSKLISCGGDRQIFYWDVSTGRVIRKFR 99 (277)
Q Consensus 22 ~~~~~~~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~ 99 (277)
.+..|.+ ++.++++--..+.|..|+..++.... +... ....+.+. ++ ..++.+...+ +.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 3578887 77777787788999999998875433 3322 27777787 55 5555555544 5555998886543322
Q ss_pred c-----ccCceeEEEEecCCCEEEEEeCC--------CcEEEEeCccCCCcceEeeccccCcEEEEEecC--CeE-EEee
Q 023772 100 G-----HESEVNAVKFNEYSSVVVSAGYD--------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK--TEI-IGGS 163 (277)
Q Consensus 100 ~-----h~~~v~~i~~~~~~~~l~s~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~g~ 163 (277)
. .....+.+.+.+++++.++.... |.+..++.. .. .............+.+++ +.+ ++-+
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECCcchheeeccc
Confidence 2 34567899999999988887654 456666654 21 122221223334455554 444 4567
Q ss_pred cCCcEEEEEccCCcc-------cccCCCC--CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeee
Q 023772 164 VDGTVRTFDIRVGRE-------LSDDLGQ--PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC 234 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~-------~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 234 (277)
..+.|..|++..... +...... ..-.++++.+|+..++....+.|.++|.. |+++..+..-. ...+.+
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~ 230 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNC 230 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEE
Confidence 778898888853221 1111122 36789999999988888889999999998 88888776442 245677
Q ss_pred Eec-CCCc
Q 023772 235 CLT-NSDA 241 (277)
Q Consensus 235 ~~~-~~~~ 241 (277)
+|. ++.+
T Consensus 231 ~fgg~~~~ 238 (246)
T PF08450_consen 231 AFGGPDGK 238 (246)
T ss_dssp EEESTTSS
T ss_pred EEECCCCC
Confidence 774 4433
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=3.3e-07 Score=79.15 Aligned_cols=192 Identities=13% Similarity=0.211 Sum_probs=125.2
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
+.|.||.+.|.-+.|+.+...|-|...+|-|.+|=+.+|..... -......|.++.|..+|.+|...-.||.|-+=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 46789999999999999999999999999999998776643221 1223457899999999999999999999887776
Q ss_pred CCCcee-EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCC-----cc-e---EeeccccCcEEEEE------
Q 023772 90 STGRVI-RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHST-----EP-I---QIIDSFQDSVMSVC------ 153 (277)
Q Consensus 90 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~-----~~-~---~~~~~~~~~~~~~~------ 153 (277)
+..+.- +.+++ .....+.|++|.+.++.+-.+|.+.++|-...-. .. + -.+...+..+..+.
T Consensus 145 dGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 145 DGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred ccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 543321 11221 1223578999999888888899999998643210 00 0 01111222222222
Q ss_pred ----ecCCeEEEeecCCcEEEEEccCC-cccccCCCCCeeEEEEeCCCCEEEEEecC
Q 023772 154 ----LTKTEIIGGSVDGTVRTFDIRVG-RELSDDLGQPVNCISMSNDGNCILASCLD 205 (277)
Q Consensus 154 ----~~~~~~~~g~~d~~i~i~d~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 205 (277)
++...++.+-..|.+.+---+.. ..+....+..+....|+++|..|+.++.|
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 22234666666666655322211 12222334567778999999999988754
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.6e-06 Score=72.86 Aligned_cols=235 Identities=13% Similarity=0.198 Sum_probs=129.4
Q ss_pred cEEEEEEeCCCCEEEEEeC-----------CCcEEEEcCCCCeeEEEEec--cCccEE-EEEEcCCCCEEEEEeCCCcEE
Q 023772 20 AVLAARFNGDGNYCLSCGK-----------DRTIRLWNPHRGIHIKTYKS--HGREVR-DVHVTADNSKLISCGGDRQIF 85 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~-----------d~~v~iwd~~~~~~~~~~~~--h~~~v~-~~~~~~~~~~l~t~s~d~~v~ 85 (277)
.|.-+.|||+.+||+|-|. ...++|||+.+|...+.|.. ....++ -..|+.++++++--.. .+|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 3778999999999998653 26789999999998888876 233333 4578999999987665 4688
Q ss_pred EEECCCCceeEEeecccCceeEEEEecCCCEEEEEe----------------CCC---cEEEEeCc--------cCC---
Q 023772 86 YWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG----------------YDQ---SLRAWDCR--------SHS--- 135 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~----------------~d~---~i~iwd~~--------~~~--- 135 (277)
+++...-.++..-.-.-..|....|+|.+++||-=. .-. +.++++.. ++.
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 887654222111000112233333344333222110 000 01111110 000
Q ss_pred --------C------cceEeec-----------cccCcEEEEEecCC--eE--EEee-cCCcEEEEEccC-Ccc---ccc
Q 023772 136 --------T------EPIQIID-----------SFQDSVMSVCLTKT--EI--IGGS-VDGTVRTFDIRV-GRE---LSD 181 (277)
Q Consensus 136 --------~------~~~~~~~-----------~~~~~~~~~~~~~~--~~--~~g~-~d~~i~i~d~~~-~~~---~~~ 181 (277)
. ....++. .....+..+.+.|. .+ ++|. ...++++|.+++ ... +..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 0 0001110 12234555565554 33 3332 245788998874 222 222
Q ss_pred CCCCCeeEEEEeCCCCEEEEE---ecCCeEEEEECCCCceEEE-EeccccceeeeeeEecCCCceEEeecC------CCe
Q 023772 182 DLGQPVNCISMSNDGNCILAS---CLDSTLRLLDRSTGELLQE-YKGHICKSFKTDCCLTNSDAHVTGGSE------DGY 251 (277)
Q Consensus 182 ~~~~~v~~~~~s~~~~~l~~~---~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~sgs~------d~~ 251 (277)
......+.+.|+|.|++++.+ |..|.+..+|..-..+... ...| ......-+.|.|+|+++++. |.-
T Consensus 490 ~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh---~~at~veWDPtGRYvvT~ss~wrhk~d~G 566 (698)
T KOG2314|consen 490 LDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH---FAATEVEWDPTGRYVVTSSSSWRHKVDNG 566 (698)
T ss_pred hcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc---cccccceECCCCCEEEEeeehhhhccccc
Confidence 223567889999999998776 4578899999874333221 1112 12233456799999999865 334
Q ss_pred EEEEECc
Q 023772 252 IYFWDLV 258 (277)
Q Consensus 252 i~iwd~~ 258 (277)
-++|+..
T Consensus 567 Yri~tfq 573 (698)
T KOG2314|consen 567 YRIFTFQ 573 (698)
T ss_pred eEEEEee
Confidence 4556554
No 301
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.77 E-value=8.2e-06 Score=75.84 Aligned_cols=199 Identities=18% Similarity=0.209 Sum_probs=124.9
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeC----C--CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGK----D--RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DR 82 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~----d--~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~ 82 (277)
..+. +.+.-..++|-.||.++|..+- + +.+|||+-+ |....+.+.-.+--.+++|.|.|++|++.-. ..
T Consensus 204 ~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 204 GKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred Cccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 3445 6666678999999999996553 2 689999954 7666665554555568899999999998753 34
Q ss_pred cEEEEECCCCceeEEee----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec-cccCcEEEEEecC-
Q 023772 83 QIFYWDVSTGRVIRKFR----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID-SFQDSVMSVCLTK- 156 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~- 156 (277)
.|.+|.- +|..-..|. .....|..+.|++++..|+..-.|. |.+|-..+-.-...+.+. ........+.|++
T Consensus 282 ~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 282 DVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCC
Confidence 5777763 444333332 3456899999999999999977666 999976542111111111 0111112233332
Q ss_pred --CeEEEeecCCcEEEEEc-------------------------------cCCcccc------cCCCCCeeEEEEeCCCC
Q 023772 157 --TEIIGGSVDGTVRTFDI-------------------------------RVGRELS------DDLGQPVNCISMSNDGN 197 (277)
Q Consensus 157 --~~~~~g~~d~~i~i~d~-------------------------------~~~~~~~------~~~~~~v~~~~~s~~~~ 197 (277)
..+.....++.+..+++ +.....+ .....+|.+++|++++.
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 22444444344433322 2111000 12346799999999998
Q ss_pred EEEEEecCCeEEEEECC
Q 023772 198 CILASCLDSTLRLLDRS 214 (277)
Q Consensus 198 ~l~~~~~d~~i~~wd~~ 214 (277)
.+++-..||.|.+|...
T Consensus 440 ~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWD 456 (928)
T ss_pred eEEEEECCCCEEEEEec
Confidence 88888999999999853
No 302
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6e-06 Score=69.47 Aligned_cols=198 Identities=11% Similarity=0.144 Sum_probs=125.1
Q ss_pred ccCCcEEEEEEeCCC--CEEEE-----EeCCCcEEEEcCCCCe-----eEEEEeccCccEEEEEEcCCCC-EEEEEe--C
Q 023772 16 GHEGAVLAARFNGDG--NYCLS-----CGKDRTIRLWNPHRGI-----HIKTYKSHGREVRDVHVTADNS-KLISCG--G 80 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~--~~l~s-----~s~d~~v~iwd~~~~~-----~~~~~~~h~~~v~~~~~~~~~~-~l~t~s--~ 80 (277)
-|...|....++|.+ ..+++ .|.=..||||....+. ..++|-. ..--.+.|++-+. .|+-++ -
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEeccCCceEEEEEEEee
Confidence 356778888888753 34443 4666789999754221 1122221 2234566776554 333232 2
Q ss_pred C---------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEE--eCCCcEEEEeCccCCCcceEeeccccCcE
Q 023772 81 D---------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSA--GYDQSLRAWDCRSHSTEPIQIIDSFQDSV 149 (277)
Q Consensus 81 d---------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 149 (277)
| .++.+.+++...+.-.+. ..++|.++.|+++++.++.+ -.=-++.+||++. .++..+...+...
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~egpRN~ 316 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPEGPRNT 316 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEeEeCCCCCccc
Confidence 3 357777776333333332 47899999999999876654 3345688888864 3444454444445
Q ss_pred EEEEecCCeEEEeec---CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEec------CCeEEEEECCCCceEE
Q 023772 150 MSVCLTKTEIIGGSV---DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCL------DSTLRLLDRSTGELLQ 220 (277)
Q Consensus 150 ~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------d~~i~~wd~~~~~~~~ 220 (277)
..+.+.++.++.++. -|.+.+||..+.+.+........+-..|+|||.+|+++.. |+.++||+.. |..+.
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 555555666655554 4789999999876666554455566799999999999864 7789999984 54443
No 303
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.76 E-value=5.1e-05 Score=60.82 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=152.1
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeC---CCcEEEEcCCC--CeeEE--EEeccCccEEEEEEcCCCCEEEEEeC-CCcEEE
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGK---DRTIRLWNPHR--GIHIK--TYKSHGREVRDVHVTADNSKLISCGG-DRQIFY 86 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~---d~~v~iwd~~~--~~~~~--~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~v~~ 86 (277)
-.+.+..+-+.|+++.+.|.++-+ +|.+..|.+.. |+... ....-..+...+++++++++++++.. -|.|.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 456777888999999999998754 47777776543 54322 12222334488999999999998875 588999
Q ss_pred EECCC-CceeE--EeecccCc----------eeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeec-cccCcEEE
Q 023772 87 WDVST-GRVIR--KFRGHESE----------VNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIID-SFQDSVMS 151 (277)
Q Consensus 87 wd~~~-~~~~~--~~~~h~~~----------v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~ 151 (277)
+-+.. |.+.. ....|..+ +....+.|+++++++... --.|.+|++..+...+..... ........
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH 195 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH 195 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcce
Confidence 99865 43321 23335544 788899999998888753 335899998754433222111 11222334
Q ss_pred EEecCCe---EEEeecCCcEEEEEccCC-ccc---------ccCCC--CCeeEEEEeCCCCEEEEEe-cCCeEEEEECCC
Q 023772 152 VCLTKTE---IIGGSVDGTVRTFDIRVG-REL---------SDDLG--QPVNCISMSNDGNCILASC-LDSTLRLLDRST 215 (277)
Q Consensus 152 ~~~~~~~---~~~g~~d~~i~i~d~~~~-~~~---------~~~~~--~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~ 215 (277)
+.+.++. .+..-.+++|.+|+.... .++ +.... .....+.++++|++|.++- ....|-+|.+..
T Consensus 196 i~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 196 IVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 4454443 345567889999987653 111 11111 2355678999999887652 344788887643
Q ss_pred --CceEEEEec-cccceeeeeeEecCCCceEEeecC-CCeEEEEECc--Cccc
Q 023772 216 --GELLQEYKG-HICKSFKTDCCLTNSDAHVTGGSE-DGYIYFWDLV--DASV 262 (277)
Q Consensus 216 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs~-d~~i~iwd~~--~~~~ 262 (277)
+++ ..... ...........+.+.+++|+.+.. +..|.+|.++ +|++
T Consensus 276 ~~g~L-~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 276 DGGKL-ELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEE-EEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 333 22221 111233566778899998877653 4458887654 4544
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=3.6e-05 Score=65.65 Aligned_cols=200 Identities=10% Similarity=0.000 Sum_probs=114.2
Q ss_pred ccEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEE-EEeCC--CcEEEEeCcc
Q 023772 61 REVRDVHVTADNSK-LISCGGD---RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVV-SAGYD--QSLRAWDCRS 133 (277)
Q Consensus 61 ~~v~~~~~~~~~~~-l~t~s~d---~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~~~d--~~i~iwd~~~ 133 (277)
+....-.|+|+++. ++..+.+ ..|.++|+.+++...-. .....+....|+||++.++ +.+.+ ..|.++|+..
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 37788999999985 5544433 46899999888654322 2445556678999997654 44434 4577767655
Q ss_pred CCCcceEeeccccCcEEEEEecCCeEEEee-cCC--cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC-----
Q 023772 134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGS-VDG--TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD----- 205 (277)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~d~--~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 205 (277)
....++..... ......+.+++..++-.+ ..+ .|.+.|+..++.......... ...|+|+|++|+..+..
T Consensus 267 g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 267 KTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred CcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCccc
Confidence 43222211111 111223444555554433 233 466777766543221111111 24899999998777643
Q ss_pred ----CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecC---CCeEEEEECcCccceeeecc
Q 023772 206 ----STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSE---DGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 206 ----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---d~~i~iwd~~~~~~~~~~~~ 268 (277)
..|.+.|+.++.. +.+.... ......++|||+.++-.+. ...+.+.++. |.....+..
T Consensus 345 ~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeec
Confidence 3688889887764 3333321 1223568999997765432 2236677774 444444543
No 305
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.8e-06 Score=73.46 Aligned_cols=200 Identities=14% Similarity=0.183 Sum_probs=133.0
Q ss_pred EEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC------
Q 023772 25 RFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGDR-----QIFYWDVSTG------ 92 (277)
Q Consensus 25 ~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~------ 92 (277)
++++.+..++-|+.||.|.+.+-. -+.++.|+++... |..+....+..+|++.+.|+ .+++|+++.-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 456888899999999999998843 3445778887777 66666665667888888775 4899998642
Q ss_pred cee---EEee----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc--CCCcceEeeccccCcEEEEEec--CCeEEE
Q 023772 93 RVI---RKFR----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS--HSTEPIQIIDSFQDSVMSVCLT--KTEIIG 161 (277)
Q Consensus 93 ~~~---~~~~----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 161 (277)
+++ +.+. ..+.++.+++++.+.+.++.|-.||.|..+.-.- ....+.........+++.+.+. +..++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 223 1111 1356789999999999999999999999985421 1112333344455677766654 333222
Q ss_pred eecCCcEEEEEccCCccc----ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe-cccc
Q 023772 162 GSVDGTVRTFDIRVGREL----SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK-GHIC 227 (277)
Q Consensus 162 g~~d~~i~i~d~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~ 227 (277)
...-..|.+|.+. ++.. ....+.+.+|.+|++....+++++. ..+.+||....++-..|. ||..
T Consensus 189 v~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 189 VATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeE
Confidence 2334567788886 3331 2345678999999876654666544 469999987666555666 6543
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.71 E-value=1.3e-05 Score=66.49 Aligned_cols=208 Identities=12% Similarity=0.124 Sum_probs=137.4
Q ss_pred eCCCCEEEEEeCCCcEEEEcCCCCeeEEE-Ee-----ccC-----ccEEEEE-EcC-CCCEEEEEeCCCcEEEEECCCCc
Q 023772 27 NGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YK-----SHG-----REVRDVH-VTA-DNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 27 ~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~-----~h~-----~~v~~~~-~~~-~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
+.||+.++- +..|.|.+||+.+.+..+. +. ... .+..-+. |++ +|++++..| -|++.+.+...+-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~ 352 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGY 352 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCe
Confidence 467887664 6668999999887543221 10 000 1111122 333 577888776 4677777766555
Q ss_pred eeEEeecccCceeEEEEecCCCEEEEEeCCC-cEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEE
Q 023772 94 VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRT 170 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i 170 (277)
.++ .+|...|.-..+..+.+-++.|..|| .+-++|...... ..+...-+.+.++..+++ .++.+.....|-+
T Consensus 353 ~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~v 427 (668)
T COG4946 353 SIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWV 427 (668)
T ss_pred eEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEE
Confidence 443 25677788777877888888899999 899999876532 233444556777776654 4666666677888
Q ss_pred EEccCCccc--ccCCCCCeeEEEEeCCCCEEEEEecCC----eEEEEECCCCceEEEEeccccceeeeeeEecCCCceEE
Q 023772 171 FDIRVGREL--SDDLGQPVNCISMSNDGNCILASCLDS----TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVT 244 (277)
Q Consensus 171 ~d~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (277)
+|+.++... ......-|...+|+|++++++-+--+| .|+++|+..++.... +... ..-.+.+|.|++++|.
T Consensus 428 ididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v-TT~t--a~DfsPaFD~d~ryLY 504 (668)
T COG4946 428 IDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV-TTPT--AYDFSPAFDPDGRYLY 504 (668)
T ss_pred EEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe-cCCc--ccccCcccCCCCcEEE
Confidence 999887542 333446799999999999999987776 689999998776543 2211 2223456778888765
No 307
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.71 E-value=3.3e-05 Score=61.88 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=133.8
Q ss_pred CCcEEEEcCCCC--ee-EEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCC--Ccee--EEeecccCceeEE
Q 023772 39 DRTIRLWNPHRG--IH-IKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVST--GRVI--RKFRGHESEVNAV 108 (277)
Q Consensus 39 d~~v~iwd~~~~--~~-~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~--~~~~--~~~~~h~~~v~~i 108 (277)
+.-|.+|++.+. +. ....-.+.+.++-++|+|+++.|.++.. +|.|-.|.++. |++- -....-..+-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 678999987642 21 1223345678999999999999998854 47777776654 5432 1111122333679
Q ss_pred EEecCCCEEEEEeC-CCcEEEEeCccC-CCcceEeeccccCc----------EEEEEecC--CeEEEee-cCCcEEEEEc
Q 023772 109 KFNEYSSVVVSAGY-DQSLRAWDCRSH-STEPIQIIDSFQDS----------VMSVCLTK--TEIIGGS-VDGTVRTFDI 173 (277)
Q Consensus 109 ~~~~~~~~l~s~~~-d~~i~iwd~~~~-~~~~~~~~~~~~~~----------~~~~~~~~--~~~~~g~-~d~~i~i~d~ 173 (277)
++++++++++++.. -|.|.++.++.. ..........|... +....++| +.+++.. .-..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999999876 478999988652 22222111112221 33334444 3444432 2346888998
Q ss_pred cCCcccc-----cCCCCCeeEEEEeCCCCEEEE-EecCCeEEEEECCCC--c--eEEEEecc----ccceeeeeeEecCC
Q 023772 174 RVGRELS-----DDLGQPVNCISMSNDGNCILA-SCLDSTLRLLDRSTG--E--LLQEYKGH----ICKSFKTDCCLTNS 239 (277)
Q Consensus 174 ~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~--~--~~~~~~~~----~~~~~~~~~~~~~~ 239 (277)
..+.... ...+.-.+.|.|+|++++... .-.+++|-+|..... + .++.+... ..........++++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8654321 133456789999999997644 556899999998663 2 22222211 12233455668999
Q ss_pred CceEEeec--CCCeEEEEECcC
Q 023772 240 DAHVTGGS--EDGYIYFWDLVD 259 (277)
Q Consensus 240 ~~~l~sgs--~d~~i~iwd~~~ 259 (277)
|++|.++- .| .|-++.+..
T Consensus 255 GrFLYasNRg~d-sI~~f~V~~ 275 (346)
T COG2706 255 GRFLYASNRGHD-SIAVFSVDP 275 (346)
T ss_pred CCEEEEecCCCC-eEEEEEEcC
Confidence 99998752 33 677776554
No 308
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.71 E-value=8.5e-07 Score=78.54 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=132.7
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEE
Q 023772 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMS 151 (277)
Q Consensus 72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 151 (277)
...++-|+....+-.+|+.+.+..+...-....|.=|. .+++.+.+|...|+|.+-|+++. +.+..+..|.+.+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--ETIHTFDAHSGSISD 222 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcC--ceeeeeeccccceee
Confidence 34566677777788889988877766654444454343 34689999999999999999865 456677889999999
Q ss_pred EEecCCeEEEeec---------CCcEEEEEccCCccccc-CCCCCeeEEEEeCCC-CEEEEEecCCeEEEEECCC-Cc-e
Q 023772 152 VCLTKTEIIGGSV---------DGTVRTFDIRVGRELSD-DLGQPVNCISMSNDG-NCILASCLDSTLRLLDRST-GE-L 218 (277)
Q Consensus 152 ~~~~~~~~~~g~~---------d~~i~i~d~~~~~~~~~-~~~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~-~~-~ 218 (277)
+...++.++++|. |..+++||+|+.+.+.. .......-+.|+|.- ..++..+..|...+-|..+ .+ .
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 9999999888765 55689999998776543 222223446677753 4578888899999999322 22 2
Q ss_pred EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEE
Q 023772 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWD 256 (277)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd 256 (277)
...+..+.+.......++++.+..++-|-.+|.|.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 44455555555566778899999999999999999997
No 309
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=4.5e-07 Score=71.00 Aligned_cols=209 Identities=12% Similarity=0.236 Sum_probs=126.9
Q ss_pred CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEeeccc------------CceeEEEEecCC--CEEEEE
Q 023772 60 GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHE------------SEVNAVKFNEYS--SVVVSA 120 (277)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~------------~~v~~i~~~~~~--~~l~s~ 120 (277)
...|+++.|...|.+++||...|.|-+|.-+... -...|+.|. ..|+.+.|..++ ..++-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3578999999999999999888999999865432 123355554 346777776553 346666
Q ss_pred eCCCcEEEEeCccCCCc-----------------ceEe--------e----------------ccccCcEEEEEecCC-e
Q 023772 121 GYDQSLRAWDCRSHSTE-----------------PIQI--------I----------------DSFQDSVMSVCLTKT-E 158 (277)
Q Consensus 121 ~~d~~i~iwd~~~~~~~-----------------~~~~--------~----------------~~~~~~~~~~~~~~~-~ 158 (277)
+.|.+|++|.+.....+ ++.. + ..|+-.+.+++++.+ +
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 88999999987643110 0000 0 011112233333322 2
Q ss_pred EEEeecCCcEEEEEccCCcc---cccC--C-----CCCeeEEEEeCCC-CEEEEEecCCeEEEEECCCCceE----E---
Q 023772 159 IIGGSVDGTVRTFDIRVGRE---LSDD--L-----GQPVNCISMSNDG-NCILASCLDSTLRLLDRSTGELL----Q--- 220 (277)
Q Consensus 159 ~~~g~~d~~i~i~d~~~~~~---~~~~--~-----~~~v~~~~~s~~~-~~l~~~~~d~~i~~wd~~~~~~~----~--- 220 (277)
.+..+.|-.|.+|++...-. +... + -.-|++..|+|.. +.+..++..|.|++-|++...+- +
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 33345566788898864321 1111 1 1247888899965 45666788999999999843211 0
Q ss_pred -EEec--c----ccceeeeeeEecCCCceEEeecCCCeEEEEECcCc-cceeeeccC
Q 023772 221 -EYKG--H----ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDA-SVVAKFKAH 269 (277)
Q Consensus 221 -~~~~--~----~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~-~~~~~~~~h 269 (277)
...+ + .....+.+..|+++|+++++-+. .+++|||++.. .+++++.-|
T Consensus 266 ~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 1111 0 11123345678999999988654 47999998874 456666544
No 310
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=5e-06 Score=72.68 Aligned_cols=235 Identities=14% Similarity=0.057 Sum_probs=150.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC------------CEEEEEeCCCcEEEEE
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN------------SKLISCGGDRQIFYWD 88 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~t~s~d~~v~~wd 88 (277)
-.++.|++.| +++-|+. ..|.+-|..+.+.+..++.|+..|+.+.|.|.. -+|+++.-.|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 5678899887 5566554 688999999999999999999999999997642 2456666779999999
Q ss_pred CCCCceeEEeecccCceeEEEEecC---C-CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe---cCCeEEE
Q 023772 89 VSTGRVIRKFRGHESEVNAVKFNEY---S-SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL---TKTEIIG 161 (277)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~---~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 161 (277)
...+..+..+..|..++..+.|-+. . .+++.-..-.++.+|+..+++.-.. .........++.+ ++.++..
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--~~ys~~iLs~f~~DPfd~rh~~~ 173 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--YDYSHEILSCFRVDPFDSRHFCV 173 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec--cccCCcceeeeeeCCCCcceEEE
Confidence 9998888888989999999998653 3 3455555667899998876543211 1111111222333 3344444
Q ss_pred eecCCcEEEEEccC-------Ccc--cccCCC-----------------CC------ee--EEEEeCCCCEEEEEecCCe
Q 023772 162 GSVDGTVRTFDIRV-------GRE--LSDDLG-----------------QP------VN--CISMSNDGNCILASCLDST 207 (277)
Q Consensus 162 g~~d~~i~i~d~~~-------~~~--~~~~~~-----------------~~------v~--~~~~s~~~~~l~~~~~d~~ 207 (277)
-+..|.+.+-+.-. +++ +...+. .+ .. .++|+|.-+-++-....+.
T Consensus 174 l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pre 253 (1062)
T KOG1912|consen 174 LGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRE 253 (1062)
T ss_pred EccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccc
Confidence 44455555443311 011 111110 00 11 1456776544444456778
Q ss_pred EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 208 LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 208 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+.++|++-..++....-...-....++...+.-..+.....||.+-+|-.+.
T Consensus 254 llv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 254 LLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 9999998877776654332222234433344455688899999999998765
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.5e-06 Score=68.23 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=134.1
Q ss_pred ceeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 023772 12 NVLKGHEGAVLAARFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADN-SKLISCGGDRQIFYWDV 89 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~d~~v~~wd~ 89 (277)
..+.+|...|..++|+|..+ ++..++-+.+|+|.|+++......+..| ..+++++|..+. .+|+.|-..|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 36778999999999999776 7888999999999999999888899888 799999999765 46788889999999999
Q ss_pred CCCc-eeEEeec--ccCceeEEEEe------cCCCEEEEEeCCCcEEEEeCccCCCcceEee-ccccCcEEEEEecC--C
Q 023772 90 STGR-VIRKFRG--HESEVNAVKFN------EYSSVVVSAGYDQSLRAWDCRSHSTEPIQII-DSFQDSVMSVCLTK--T 157 (277)
Q Consensus 90 ~~~~-~~~~~~~--h~~~v~~i~~~------~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~--~ 157 (277)
..-+ ....+.+ ...+|..++.- +.+.+++..+.+ ...|++........... -..++.+++....+ +
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 7532 2333322 23455544432 223444444333 34455432111111101 11122333332222 2
Q ss_pred e-EEEeec--------------CCc--EEEEEccCCcccccCCCC---CeeEEEEeCCCCEEEE-EecCCeEEEEECCCC
Q 023772 158 E-IIGGSV--------------DGT--VRTFDIRVGRELSDDLGQ---PVNCISMSNDGNCILA-SCLDSTLRLLDRSTG 216 (277)
Q Consensus 158 ~-~~~g~~--------------d~~--i~i~d~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~-~~~d~~i~~wd~~~~ 216 (277)
. +++.-. |+. --+|..+.. ....... .-..+.=.++.++++. +..-+.+.+||..+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~--~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ 421 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRT--YFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF 421 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeeccc--ccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence 2 222211 111 011211110 0000000 0111111334455443 445568999999999
Q ss_pred ceEEEEeccccceeeeeeEe--cCCCceEEeecCCCeEEEEECc
Q 023772 217 ELLQEYKGHICKSFKTDCCL--TNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+.++++.-.. ...+.+. .+.+.+|+.=. |..++||..+
T Consensus 422 evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 422 EVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred heeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 9999887542 2334332 23455666544 5578887654
No 312
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.65 E-value=3.2e-05 Score=72.03 Aligned_cols=230 Identities=12% Similarity=0.118 Sum_probs=137.3
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEE----cCCCC--eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLW----NPHRG--IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS- 90 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iw----d~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~- 90 (277)
.+.|.++.|-++...++.+.++|.|-+. +..+. +.+..+ ...|.+++|+||+..|+.+..++++-+.+-.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 4679999999999988999999999999 55443 233333 4789999999999999988888887766421
Q ss_pred ----------------------CCceeEEeec------------------------ccCceeEEEEecCCCEEEEEeC--
Q 023772 91 ----------------------TGRVIRKFRG------------------------HESEVNAVKFNEYSSVVVSAGY-- 122 (277)
Q Consensus 91 ----------------------~~~~~~~~~~------------------------h~~~v~~i~~~~~~~~l~s~~~-- 122 (277)
-|+.-.+|+| +...-..++|-.||++++..+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 0111111211 1123345889999999988775
Q ss_pred -C---CcEEEEeCccCCCcceEeecccc--CcEEEEEecCCeEEEeec---CCcEEEEEccCCcc---c--cc-CCCCCe
Q 023772 123 -D---QSLRAWDCRSHSTEPIQIIDSFQ--DSVMSVCLTKTEIIGGSV---DGTVRTFDIRVGRE---L--SD-DLGQPV 187 (277)
Q Consensus 123 -d---~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~---d~~i~i~d~~~~~~---~--~~-~~~~~v 187 (277)
+ +.+++|+-. +.. ....+... ....++.++++.+++.-. ...|.+|+ ++|.. + .. .....|
T Consensus 232 ~~~~~R~iRVy~Re-G~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v 307 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKV 307 (928)
T ss_pred CCCceeEEEEECCC-ceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCcee
Confidence 2 579999854 211 11111111 122334444554554432 23455555 23321 1 11 334679
Q ss_pred eEEEEeCCCCEEEEEecCCeEEEEECCCCce--EEEEeccccceeeeeeEecCCC-ceEEeecCCCeEEEEE
Q 023772 188 NCISMSNDGNCILASCLDSTLRLLDRSTGEL--LQEYKGHICKSFKTDCCLTNSD-AHVTGGSEDGYIYFWD 256 (277)
Q Consensus 188 ~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~iwd 256 (277)
..+.|++++..|+.--.|. |++|-..+... -+++.-..... ...+.++|.. ..|...+.+|.+..++
T Consensus 308 ~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~-~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 308 IELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSES-VNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred eEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCC-CCceEECCCCCCEEEEEecCCcEEEEE
Confidence 9999999999988877665 99999877542 22222111111 1124566643 3466666656665544
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.63 E-value=4.8e-07 Score=69.07 Aligned_cols=164 Identities=12% Similarity=0.183 Sum_probs=100.5
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE-EEEeccCccEEEEEEcCCCCEEEEEe-----CCCcE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHI-KTYKSHGREVRDVHVTADNSKLISCG-----GDRQI 84 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~t~s-----~d~~v 84 (277)
..++..|.++=.+-+.+-.++.++++..||.+.+.+.+.-..+ +....-...-.+.++...++.+.++. .-+..
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 3445556665544444555778899999999999997652111 11111111112223333344444432 22456
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecC-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC---CeEE
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEY-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK---TEII 160 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 160 (277)
+.|++...+...........|.+++-+|. .+++++|+.||.+-+||.+... .+...+..|...+..+.|.| ..|+
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchhee
Confidence 67776544332222223345888888875 4567888899999999998752 34444556667777777754 5699
Q ss_pred EeecCCcEEEEEccC
Q 023772 161 GGSVDGTVRTFDIRV 175 (277)
Q Consensus 161 ~g~~d~~i~i~d~~~ 175 (277)
+++.||.+--||-.+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999999763
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.9e-05 Score=69.88 Aligned_cols=200 Identities=15% Similarity=0.279 Sum_probs=125.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCc-eeEEEEecCCCEEEEEeCCCc-----EEEEeCccCCCc--
Q 023772 66 VHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE-VNAVKFNEYSSVVVSAGYDQS-----LRAWDCRSHSTE-- 137 (277)
Q Consensus 66 ~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~-- 137 (277)
-+|++.+..++-|+.+|.|.+.+- .-+.++.|+.+... |..+....+.+.+++.+.|++ +++|++......
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 356788899999999998877752 23445778887776 666666666678888887765 899998643211
Q ss_pred --ce---Eeec------cccCcEEEEEecCCeEEEeecCCcEEEEEccC--C----cccccCCCCCeeEEEEeCCCCE-E
Q 023772 138 --PI---QIID------SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRV--G----RELSDDLGQPVNCISMSNDGNC-I 199 (277)
Q Consensus 138 --~~---~~~~------~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~--~----~~~~~~~~~~v~~~~~s~~~~~-l 199 (277)
.. .++. ..+.++.++.-+-..++.|-.+|.|..+.-.- . .........+|+.+.+..+++. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 11 1111 12223344444445588999999999875321 1 1223344679999999988876 3
Q ss_pred EEEecCCeEEEEECCCCceE-EEEeccccceeeeeeEecCCCce-EEeecCCCeEEEEECcCccceeeec-cCcc
Q 023772 200 LASCLDSTLRLLDRSTGELL-QEYKGHICKSFKTDCCLTNSDAH-VTGGSEDGYIYFWDLVDASVVAKFK-AHSL 271 (277)
Q Consensus 200 ~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~sgs~d~~i~iwd~~~~~~~~~~~-~h~~ 271 (277)
+++ .-..|.+|.+....+. ..+..+ ...+.|....++.. ++.++ +..+++|+.+....--.|. +|..
T Consensus 188 Fv~-Tt~~V~~y~l~gr~p~~~~ld~~---G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVA-TTEQVMLYSLSGRTPSLKVLDNN---GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEE-ecceeEEEEecCCCcceeeeccC---CccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 333 3457999999744422 223333 33455544444444 44443 3379999998877666676 6654
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.57 E-value=4.6e-05 Score=66.55 Aligned_cols=233 Identities=15% Similarity=0.182 Sum_probs=136.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCcee
Q 023772 31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-----VR-DVHVTADNSKLISCG---------GDRQIFYWDVSTGRVI 95 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-----v~-~~~~~~~~~~l~t~s---------~d~~v~~wd~~~~~~~ 95 (277)
..++.++.|+.|.-+|..+|+.+-.+...... +. +..+. +.+++.++ .++.+..+|.++|+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57777788999999999999888776543321 11 11222 24454443 3678999999999988
Q ss_pred EEeecccC--------------------ce-eEEEEecCCCEEEEEeCCC------------------cEEEEeCccCCC
Q 023772 96 RKFRGHES--------------------EV-NAVKFNEYSSVVVSAGYDQ------------------SLRAWDCRSHST 136 (277)
Q Consensus 96 ~~~~~h~~--------------------~v-~~i~~~~~~~~l~s~~~d~------------------~i~iwd~~~~~~ 136 (277)
..+..... .+ .+..+.+.+.+++.++.|+ .+.-.|..+.+.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 77654211 11 1234444556777776665 677778776544
Q ss_pred cceEeecccc--------CcE-EEEE-ecCC---eEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEE-
Q 023772 137 EPIQIIDSFQ--------DSV-MSVC-LTKT---EIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILAS- 202 (277)
Q Consensus 137 ~~~~~~~~~~--------~~~-~~~~-~~~~---~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~- 202 (277)
........+. .++ ..+. .++. .++.++.+|.+...|.++++.+-..... ...+..+| + .+..+
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-~~~~~~~~-~-~vyv~~ 345 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-EQPMAYDP-G-LVYLGA 345 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-ccccccCC-c-eEEEcc
Confidence 3222111110 011 1111 1222 3667888999999999998765432100 11223344 2 22222
Q ss_pred -----------------ecCCeEEEEECCCCceEEEEeccccc------eeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 203 -----------------CLDSTLRLLDRSTGELLQEYKGHICK------SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 203 -----------------~~d~~i~~wd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
..+|.+.-.|+.+|+.+......... .......+...+..|+.|+.||.++.+|..+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 24678889999999888766432100 0000011122456788889999999999999
Q ss_pred ccceeeecc
Q 023772 260 ASVVAKFKA 268 (277)
Q Consensus 260 ~~~~~~~~~ 268 (277)
|+.+-+++-
T Consensus 426 G~~lW~~~~ 434 (488)
T cd00216 426 GKELWKFRT 434 (488)
T ss_pred CceeeEEEC
Confidence 999877663
No 316
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.8e-05 Score=69.57 Aligned_cols=181 Identities=13% Similarity=0.169 Sum_probs=126.5
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..+.|++++ ++.++-|..+|.+.+.+.. +.. ++...|+.. ..+|.+++|||.||+|.+-.+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 445556555 5688899999999999854 333 333345433 678999999999999999999888776655
Q ss_pred ecccCceeEEEEecC-----CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEc
Q 023772 99 RGHESEVNAVKFNEY-----SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDI 173 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~ 173 (277)
. -..++.+++++|+ .+.+++||.-| +.++.-+=.............+++.++.+.++.++=+..+| +++||.
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~ 186 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDT 186 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecCcEEEEecCCC-cEEEec
Confidence 5 3568899999997 56899999988 77775321111112235566788999999998887666555 899999
Q ss_pred cCCcccccC---C-----CCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772 174 RVGRELSDD---L-----GQPVNCISMSNDGNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 174 ~~~~~~~~~---~-----~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~ 214 (277)
...+.+... . ..-...+.|.++.+ |+.| ...+|++..++
T Consensus 187 ~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 187 PTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 877654221 1 11234577887664 5665 44478888876
No 317
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.51 E-value=1e-07 Score=84.04 Aligned_cols=196 Identities=18% Similarity=0.226 Sum_probs=130.2
Q ss_pred ceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC--cEEEEEC
Q 023772 12 NVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR--QIFYWDV 89 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~--~v~~wd~ 89 (277)
..++-|...-+|++|+.+.+.|+.|+..|.|++++..+|.-.....+|+.+|+-+.=+.++..+++.+.-. -..+|++
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcc
Confidence 34567888999999999999999999999999999999998899999999999999999998887765433 4789998
Q ss_pred CC-CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEe-ecc---ccCcEEEEEecCCe-EEEee
Q 023772 90 ST-GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQI-IDS---FQDSVMSVCLTKTE-IIGGS 163 (277)
Q Consensus 90 ~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~-~~~g~ 163 (277)
.+ +.+.++|..- .++.|+.....-+.|..-....+||+.+..+ .+. +.. .+-.-....++|.. ++ -
T Consensus 1175 ~s~~~~~Hsf~ed----~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LI--l 1246 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDED----KAVKFSNSLQFRALGTEADDALLYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLI--L 1246 (1516)
T ss_pred ccccCcccccccc----ceeehhhhHHHHHhcccccceEEEecccCcH--HHHhcCcchhhhhhccccccCCCcceE--e
Confidence 64 5566666532 3466765533333333445678899876542 221 110 00001122333322 11 1
Q ss_pred cCCcEEEEEccCCcccccCCCC-CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEE
Q 023772 164 VDGTVRTFDIRVGRELSDDLGQ-PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEY 222 (277)
Q Consensus 164 ~d~~i~i~d~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 222 (277)
.||. +||.|..+.+...-.- .--.-.|+|.|+.++..+ .|||+++.+.++..
T Consensus 1247 ndGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 NDGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred eCce--eeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHHHHHHhcC
Confidence 2342 6999887655332111 112346999999998876 58999987766543
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=5.5e-06 Score=72.61 Aligned_cols=153 Identities=16% Similarity=0.278 Sum_probs=105.8
Q ss_pred eeccCCcEEEEEEeCC-------------CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC-----CCEE
Q 023772 14 LKGHEGAVLAARFNGD-------------GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD-----NSKL 75 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~-------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l 75 (277)
|..|.+.|.-..+..+ |++++|||.||++.|-.+.+.+...++.-+ .++.+++++|+ .+.+
T Consensus 54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~-rpiksial~Pd~~~~~sk~f 132 (846)
T KOG2066|consen 54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK-RPIKSIALHPDFSRQQSKQF 132 (846)
T ss_pred eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC-CcceeEEeccchhhhhhhhe
Confidence 4568888877766555 999999999999999988887766665543 69999999998 5789
Q ss_pred EEEeCCCcEEEEECCC---CceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecccc------
Q 023772 76 ISCGGDRQIFYWDVST---GRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQ------ 146 (277)
Q Consensus 76 ~t~s~d~~v~~wd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~------ 146 (277)
++||..| +.++.-.- ...+ .+..-.++|.++.|. ++++|-++.+| |++||...... +..+....
T Consensus 133 v~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~--l~~i~~p~~~~R~e 205 (846)
T KOG2066|consen 133 VSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQR--LTNIPPPSQSVRPE 205 (846)
T ss_pred eecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccce--eeccCCCCCCCCcc
Confidence 9999888 77765332 1111 244457899999998 67999998888 89999865321 11111100
Q ss_pred CcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 147 DSVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 147 ~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
..-..+.|.+..-++-|...+|++..++
T Consensus 206 ~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 206 LFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred cCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 1112334445555566777788888877
No 319
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.46 E-value=0.00039 Score=55.07 Aligned_cols=198 Identities=14% Similarity=0.094 Sum_probs=115.7
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEe-cCCCEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772 65 DVHVTA-DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFN-EYSSVVVSAGYDQSLRAWDCRSHSTEPIQII 142 (277)
Q Consensus 65 ~~~~~~-~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 142 (277)
+..|.+ ++.++++--..+.|..|+..+++... +.. .. ..++.+. +++.+ +.+..++ +.++|+.+.....+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~-~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL-PG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES-SS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec-CC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeec
Confidence 567887 55566666678999999998876532 221 12 6677887 56544 4445544 55568776543333322
Q ss_pred c--c-ccCcEEEEEecCCe-EEEeec-C--------CcEEEEEccCCccc-ccCCCCCeeEEEEeCCCCEEE-EEecCCe
Q 023772 143 D--S-FQDSVMSVCLTKTE-IIGGSV-D--------GTVRTFDIRVGREL-SDDLGQPVNCISMSNDGNCIL-ASCLDST 207 (277)
Q Consensus 143 ~--~-~~~~~~~~~~~~~~-~~~g~~-d--------~~i~i~d~~~~~~~-~~~~~~~v~~~~~s~~~~~l~-~~~~d~~ 207 (277)
. . .......+.++++. ++.+.. . +.+..++.. ++.. ....-...+.++|+|+++.|. +-+..+.
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 1 22344555555544 443322 1 345566655 2211 111224578999999998765 6677888
Q ss_pred EEEEECCCC-c-e--EEEEec-cccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 208 LRLLDRSTG-E-L--LQEYKG-HICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 208 i~~wd~~~~-~-~--~~~~~~-~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
|..|++... . . .+.+.. .......--.++..+|++.++....+.|.++|.+ |+++..+.-.
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 999998532 2 1 122211 1111123446677888887777778899999988 9988888754
No 320
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.41 E-value=0.00058 Score=54.72 Aligned_cols=197 Identities=15% Similarity=0.114 Sum_probs=109.9
Q ss_pred EEEeC-CCCEEEEEeCCCc-EEEEcCCCCeeEEEEeccCccE--EEEEEcCCCCEEEEEeC-----CCcEEEEECC-CCc
Q 023772 24 ARFNG-DGNYCLSCGKDRT-IRLWNPHRGIHIKTYKSHGREV--RDVHVTADNSKLISCGG-----DRQIFYWDVS-TGR 93 (277)
Q Consensus 24 ~~~~~-~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h~~~v--~~~~~~~~~~~l~t~s~-----d~~v~~wd~~-~~~ 93 (277)
++.+| .+..++-+-.-|+ +-+||..+++....+....+.- ---.|++++++|+|.-. .|.|-|||.. +-+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 44455 3333334433333 4567887777666554322221 13679999999999754 4789999998 567
Q ss_pred eeEEeecccCceeEEEEecCCCEEEEEeC-------CCcEEEEeCccCCCcce------------Eee--ccccCcEEEE
Q 023772 94 VIRKFRGHESEVNAVKFNEYSSVVVSAGY-------DQSLRAWDCRSHSTEPI------------QII--DSFQDSVMSV 152 (277)
Q Consensus 94 ~~~~~~~h~~~v~~i~~~~~~~~l~s~~~-------d~~i~iwd~~~~~~~~~------------~~~--~~~~~~~~~~ 152 (277)
.+.+|..|.-.-..+.+.|+++.|+.+.. .|.-++ |+.+.++... ..+ ..++.++..+
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKL-NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceec-ChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 78888887766677889999977666532 122222 2222111101 011 1123334444
Q ss_pred EecCCeE-EEeec-CCc-------EEEEEccCCccc---------ccCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEEC
Q 023772 153 CLTKTEI-IGGSV-DGT-------VRTFDIRVGREL---------SDDLGQPVNCISMSNDGNCILASC-LDSTLRLLDR 213 (277)
Q Consensus 153 ~~~~~~~-~~g~~-d~~-------i~i~d~~~~~~~---------~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~ 213 (277)
.++++.. +.|.. .+. +-+++ .++.+ ......-+-++++++++.+++++| .-+.+.+||.
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 4433321 11111 110 11111 11111 112234588999999998886666 4568889999
Q ss_pred CCCceEEEEe
Q 023772 214 STGELLQEYK 223 (277)
Q Consensus 214 ~~~~~~~~~~ 223 (277)
.+++++....
T Consensus 247 ~tg~~~~~~~ 256 (305)
T PF07433_consen 247 ATGRLLGSVP 256 (305)
T ss_pred CCCCEeeccc
Confidence 9999887654
No 321
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.34 E-value=0.00038 Score=55.73 Aligned_cols=182 Identities=15% Similarity=0.249 Sum_probs=118.0
Q ss_pred EEEeCCCCEEEEE-----eCCCcEEEEcCC-CCeeEEEEeccCccEEEEEEcCCCCEEEEEe------------------
Q 023772 24 ARFNGDGNYCLSC-----GKDRTIRLWNPH-RGIHIKTYKSHGREVRDVHVTADNSKLISCG------------------ 79 (277)
Q Consensus 24 ~~~~~~~~~l~s~-----s~d~~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s------------------ 79 (277)
-.|++||++|++. ...|.|-|||.. ....+.+|..|.-....+.+.|+++.|+.+-
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~t 135 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDT 135 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhh
Confidence 6799999999986 334899999998 6677888988888888999999998777652
Q ss_pred CCCcEEEEECCCCceeEE--e--ecccCceeEEEEecCCCEEEEEeCCCc-------EEEEeCccCCCcce----Eeecc
Q 023772 80 GDRQIFYWDVSTGRVIRK--F--RGHESEVNAVKFNEYSSVVVSAGYDQS-------LRAWDCRSHSTEPI----QIIDS 144 (277)
Q Consensus 80 ~d~~v~~wd~~~~~~~~~--~--~~h~~~v~~i~~~~~~~~l~s~~~d~~-------i~iwd~~~~~~~~~----~~~~~ 144 (277)
.+-++.+.|..+|+++.+ + ..|...+.-+++.+++..++..-..|. +-+++.... .... .....
T Consensus 136 M~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 136 MQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRR 214 (305)
T ss_pred cCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHh
Confidence 112455667778887766 4 337788988999998877766544443 222221110 0000 00112
Q ss_pred ccCcEEEEEecCC--eE-EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772 145 FQDSVMSVCLTKT--EI-IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTL 208 (277)
Q Consensus 145 ~~~~~~~~~~~~~--~~-~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 208 (277)
....+-++.++.. .+ +++=..+.+.+||..+++.+....-..+..++-.+++ ++++ +..|.+
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~s-sG~G~~ 279 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVS-SGQGQL 279 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEe-CCCccE
Confidence 3455667777654 34 3444567899999998876655444456666666666 4444 445544
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.34 E-value=4.4e-06 Score=70.97 Aligned_cols=76 Identities=11% Similarity=0.134 Sum_probs=65.2
Q ss_pred ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772 16 GHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 16 ~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
.....|.+++++|+.+.++.|+.||+|.+||..++... +..+.-.++.++|+|++..++.|+..|.+.+||+.-+.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 46788999999999999999999999999998776433 33345678999999999999999999999999986544
No 323
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.30 E-value=2.6e-05 Score=66.45 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=81.1
Q ss_pred CcEEEEEEeC-CCCEEEE----EeCCCcE----EEEcCCCCeeEE---EEeccCccEEEEEEcCCCCEEEEEeCCCcEEE
Q 023772 19 GAVLAARFNG-DGNYCLS----CGKDRTI----RLWNPHRGIHIK---TYKSHGREVRDVHVTADNSKLISCGGDRQIFY 86 (277)
Q Consensus 19 ~~V~~~~~~~-~~~~l~s----~s~d~~v----~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~ 86 (277)
....++.|+. +...+.| .+.+|.+ .+|+...++..+ +--.....+.+++++|+.++++.|..||+|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3345777776 3444443 3555554 345544332211 11235678999999999999999999999999
Q ss_pred EECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCcc
Q 023772 87 WDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRS 133 (277)
Q Consensus 87 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~ 133 (277)
||...+.. .+..+.-..+.++|+|++.+++.|+..|.+.+||+.-
T Consensus 286 yD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 99876633 2334556678899999999999999999999999864
No 324
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=4.7e-05 Score=66.05 Aligned_cols=153 Identities=10% Similarity=0.079 Sum_probs=108.5
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE-EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT-YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
|...|.--+++..+++++-|+.-|.+.+|+-..+..... ..+..+.+..+.++++..+++.|+..|.|.++-+..+.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 556666677788899999999999999999877654333 3334456667778888888888899999999988764321
Q ss_pred -----EEe-ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC--CcceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772 96 -----RKF-RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS--TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT 167 (277)
Q Consensus 96 -----~~~-~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 167 (277)
..+ +.|...|+++.|++++..+++|..-|+|..-.+.... .-+.+.+......|..+......++..+.-+.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r~ 191 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTRC 191 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhhh
Confidence 111 2378999999999999999999999999988876521 11233333445566666655555555554444
Q ss_pred EE
Q 023772 168 VR 169 (277)
Q Consensus 168 i~ 169 (277)
+.
T Consensus 192 ~L 193 (726)
T KOG3621|consen 192 IL 193 (726)
T ss_pred he
Confidence 43
No 325
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.0015 Score=60.46 Aligned_cols=196 Identities=14% Similarity=0.144 Sum_probs=121.5
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC----CC---
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV----ST--- 91 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~----~~--- 91 (277)
+.|.++.|-.++..++-+..+|.|.+-|..+... .....-...|.++.|+|+.+.++-...++++.+-+- -.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 5799999999999888889999999999877532 222234578999999999999888877777655442 00
Q ss_pred ----------------CceeEEeeccc---------------------CceeEEEEecCCCEEEEE-----eCCCcEEEE
Q 023772 92 ----------------GRVIRKFRGHE---------------------SEVNAVKFNEYSSVVVSA-----GYDQSLRAW 129 (277)
Q Consensus 92 ----------------~~~~~~~~~h~---------------------~~v~~i~~~~~~~~l~s~-----~~d~~i~iw 129 (277)
|+.-..|++.. +.=.+|.|--||++++.. ...+.|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 11111232110 111348888899998883 333899999
Q ss_pred eCccCCCcceEeeccccCcEEEEEecCCeEEEe---ecCCcEEEEEccC---Cc-ccccCCCC-CeeEEEEeCCCCEEEE
Q 023772 130 DCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG---SVDGTVRTFDIRV---GR-ELSDDLGQ-PVNCISMSNDGNCILA 201 (277)
Q Consensus 130 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~d~~i~i~d~~~---~~-~~~~~~~~-~v~~~~~s~~~~~l~~ 201 (277)
|-. +................+..+++..+++- ..|+.|.+|.-.. +. .+....+. ++..++|+.++..|+.
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 965 21111111111222334444444444443 3456788887421 11 12223333 4899999999998877
Q ss_pred ---EecCCeEEEEECCCC
Q 023772 202 ---SCLDSTLRLLDRSTG 216 (277)
Q Consensus 202 ---~~~d~~i~~wd~~~~ 216 (277)
......|++|-..+.
T Consensus 307 ~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 307 VTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eecccccceEEEEEecCe
Confidence 445556999998764
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.24 E-value=0.00029 Score=63.76 Aligned_cols=140 Identities=23% Similarity=0.358 Sum_probs=93.2
Q ss_pred CCEEEEE-eCCCcEEEEECCCCceeEEeecccCc-eeEEEEec-----CCCEEEEEeCCCcEEEEeCccCCCcceEe-ec
Q 023772 72 NSKLISC-GGDRQIFYWDVSTGRVIRKFRGHESE-VNAVKFNE-----YSSVVVSAGYDQSLRAWDCRSHSTEPIQI-ID 143 (277)
Q Consensus 72 ~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h~~~-v~~i~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~ 143 (277)
.++|+.. .....++-.|++.|+++..+..|... |..++-.. .....+.|-.+..+..||+|......+.. ..
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3444443 35678999999999999999988654 65554332 13345667888899999998653221210 10
Q ss_pred --cccCcEEEEEecC-CeEEEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 144 --SFQDSVMSVCLTK-TEIIGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 144 --~~~~~~~~~~~~~-~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
.......+++.+. .++++|+.+|.||+||- .+.. .....+.||..++.+.||+|+++.+. ..|-|++.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1112233344443 45999999999999993 3332 22245789999999999999988764 46777774
No 327
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.13 E-value=7.3e-06 Score=43.68 Aligned_cols=36 Identities=44% Similarity=0.827 Sum_probs=32.8
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEc
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWN 46 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd 46 (277)
...+.+|...|.++.|.+++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455678999999999999999999999999999996
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.09 E-value=2.1e-06 Score=73.48 Aligned_cols=192 Identities=13% Similarity=0.100 Sum_probs=118.3
Q ss_pred cEEEEEEeCCC--CEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCC-CCEEEEEe----CCCcEEEEECC
Q 023772 20 AVLAARFNGDG--NYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTAD-NSKLISCG----GDRQIFYWDVS 90 (277)
Q Consensus 20 ~V~~~~~~~~~--~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~-~~~l~t~s----~d~~v~~wd~~ 90 (277)
-+.|++++.+. ..++.|.++|.|-+=......- -....+|..++++++|++- .+.|++|- .|..+++||.+
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 46677765543 4667889999998876543211 2345667889999999874 34555542 45689999998
Q ss_pred CC--ceeEE--eec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec--cccCcEEEEEecCCeEEEee
Q 023772 91 TG--RVIRK--FRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID--SFQDSVMSVCLTKTEIIGGS 163 (277)
Q Consensus 91 ~~--~~~~~--~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~ 163 (277)
++ .+..+ |.. -....++++|..+.+++++|...+.+.++|++.... ....+. .+++ +..=.+.++++.+ .
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG-~tVdp~~~nY~cs-~ 214 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQG-ITVDPFSPNYFCS-N 214 (783)
T ss_pred cccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhccc-ceecCCCCCceec-c
Confidence 76 22221 222 334556788888899999999999999999984321 111111 1111 1111224555544 4
Q ss_pred cCCcEEEEE-ccCCcccc----c---CCCCCeeEEEEeCCCC-EEEE-EecCCeEEEEECC
Q 023772 164 VDGTVRTFD-IRVGRELS----D---DLGQPVNCISMSNDGN-CILA-SCLDSTLRLLDRS 214 (277)
Q Consensus 164 ~d~~i~i~d-~~~~~~~~----~---~~~~~v~~~~~s~~~~-~l~~-~~~d~~i~~wd~~ 214 (277)
.|+.|.+|| .+..+... . .....+..++|.|... .+++ .-..++|+++|+.
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 599999999 44332211 1 1123578899998542 2333 3456689999974
No 329
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.07 E-value=8.2e-06 Score=61.48 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=83.9
Q ss_pred CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccC---CCCCeeEEE
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD---LGQPVNCIS 191 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~---~~~~v~~~~ 191 (277)
..+...+.||.+.-++++.... ..+.-..+... ..+.-....+++|+.+|.|.+|+....-..... ...++-++-
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~-s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKE-SCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhhccccCCcccccchhhhhhh-hhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3455567889999888765321 11111111111 333334556899999999999987632222211 122333322
Q ss_pred -EeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee--cCCCeEEEEECcC
Q 023772 192 -MSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG--SEDGYIYFWDLVD 259 (277)
Q Consensus 192 -~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~iwd~~~ 259 (277)
--.++.+..+++.|+.||.|+...++.+....+|.... ......+..+++++.+ |.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~-~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES-GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCC-cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 22345678889999999999999888775554454211 2222334446667766 8888888888754
No 330
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.05 E-value=0.0049 Score=54.02 Aligned_cols=191 Identities=17% Similarity=0.178 Sum_probs=108.9
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc------cEE--EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR------EVR--DVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h 101 (277)
+..++.++.|+.+.-.|..+|+.+-.++.... .+. .+.+. ++.+++.++.++.|.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44666778889999999999987766543322 010 11111 2267888889999999999999998776543
Q ss_pred cCc-----e-eEEEEecCCCEEEEEe---------CCCcEEEEeCccCCCcceEeecccc------------------Cc
Q 023772 102 ESE-----V-NAVKFNEYSSVVVSAG---------YDQSLRAWDCRSHSTEPIQIIDSFQ------------------DS 148 (277)
Q Consensus 102 ~~~-----v-~~i~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~~~~------------------~~ 148 (277)
... + .+..+. +.+++.++ .++.+..+|..+............. ..
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 221 1 111222 23444443 3577888887765432221111000 00
Q ss_pred ---EEEEEecCCeEEEeecCC------------------cEEEEEccCCcccccCC-C-CCe------eEEEEe----CC
Q 023772 149 ---VMSVCLTKTEIIGGSVDG------------------TVRTFDIRVGRELSDDL-G-QPV------NCISMS----ND 195 (277)
Q Consensus 149 ---~~~~~~~~~~~~~g~~d~------------------~i~i~d~~~~~~~~~~~-~-~~v------~~~~~s----~~ 195 (277)
...+......++.++.++ .+.-+|..+++..-... . ... ....+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 011222234566666554 57778888876542211 0 000 000111 13
Q ss_pred CC---EEEEEecCCeEEEEECCCCceEEEEe
Q 023772 196 GN---CILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 196 ~~---~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
|. .++.++.+|.++..|.++|+.+..+.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 33 57788899999999999999987654
No 331
>PHA02713 hypothetical protein; Provisional
Probab=98.02 E-value=0.00088 Score=59.52 Aligned_cols=225 Identities=8% Similarity=0.018 Sum_probs=110.6
Q ss_pred cEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc--eeEEeecccCceeEEEEe
Q 023772 41 TIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD------RQIFYWDVSTGR--VIRKFRGHESEVNAVKFN 111 (277)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~--~~~~~~~h~~~v~~i~~~ 111 (277)
.+..||+.+++....-.-.... -.+++. .++..++.||.+ ..+..||..++. .+..+....... ++ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EE
Confidence 5677888776543221111111 122222 356667777754 346778876653 121121111111 12 22
Q ss_pred cCCCEEEEEeCCC-----cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC---------------------
Q 023772 112 EYSSVVVSAGYDQ-----SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD--------------------- 165 (277)
Q Consensus 112 ~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d--------------------- 165 (277)
-++++.+.||.++ ++..||+.+..-.....+.........+..++.-.+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~ 429 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTH 429 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccccccc
Confidence 3466777787764 47888876532111111111111112233444445556554
Q ss_pred --CcEEEEEccCCc--ccccCCCCCee-EEEEeCCCCEEEEEecC------CeEEEEECCC-CceEEEEeccccceeeee
Q 023772 166 --GTVRTFDIRVGR--ELSDDLGQPVN-CISMSNDGNCILASCLD------STLRLLDRST-GELLQEYKGHICKSFKTD 233 (277)
Q Consensus 166 --~~i~i~d~~~~~--~~~~~~~~~v~-~~~~s~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~ 233 (277)
..+..||.++.+ .+......... +++ .-+|+.++.|+.+ ..+..||..+ ++... ...........
T Consensus 430 ~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~-~~~m~~~r~~~- 506 (557)
T PHA02713 430 SSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWEL-ITTTESRLSAL- 506 (557)
T ss_pred ccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeE-ccccCcccccc-
Confidence 246678876643 11111111111 122 2256667777654 2467899887 44332 11111111111
Q ss_pred eEecCCCceEEeecCCC--eEEEEECcCccceeeeccCcc
Q 023772 234 CCLTNSDAHVTGGSEDG--YIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 234 ~~~~~~~~~l~sgs~d~--~i~iwd~~~~~~~~~~~~h~~ 271 (277)
.+..-+++..+.|+.|+ .+..||..+.+.......|+.
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 12223677777888787 788999999988877777753
No 332
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.99 E-value=0.0041 Score=48.25 Aligned_cols=83 Identities=10% Similarity=0.045 Sum_probs=61.4
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVK 109 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~ 109 (277)
|++++-|...|.+.+-+..+|.....|..-..--......+++..|..|+.|+.....|..+..++.+.+.......+-.
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~ 142 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPV 142 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccce
Confidence 67888999999999999999987776654332223344567899999999999999999999988877654333223333
Q ss_pred Eec
Q 023772 110 FNE 112 (277)
Q Consensus 110 ~~~ 112 (277)
..+
T Consensus 143 i~~ 145 (354)
T KOG4649|consen 143 IAP 145 (354)
T ss_pred ecC
Confidence 444
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.99 E-value=0.0018 Score=56.86 Aligned_cols=168 Identities=14% Similarity=0.087 Sum_probs=95.9
Q ss_pred CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCc----EEEEeCccCCCcceEeeccccCcEEEEEecCC
Q 023772 82 RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS----LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT 157 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (277)
+.+.+.|.++.++..++.--. .-..++++++++++++.+.+.. +..-+.. .......+... .+..+..+++
T Consensus 215 ~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~--e~d~~vvfni~--~iea~vkdGK 289 (635)
T PRK02888 215 SLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA--ERDWVVVFNIA--RIEEAVKAGK 289 (635)
T ss_pred EEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccc--cCceEEEEchH--HHHHhhhCCC
Confidence 556677777766666554322 2345778888888877764321 1111111 11111111000 0001111223
Q ss_pred eEEEeecCCcEEEEEccC----Ccccc--cCCCCCeeEEEEeCCCCEEEEEe-cCCeEEEEECCCCce------------
Q 023772 158 EIIGGSVDGTVRTFDIRV----GRELS--DDLGQPVNCISMSNDGNCILASC-LDSTLRLLDRSTGEL------------ 218 (277)
Q Consensus 158 ~~~~g~~d~~i~i~d~~~----~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~~~~------------ 218 (277)
.... .++.+.+.|.++ +..+. ...+.....+.++|||+++++++ .+.++-+.|+.+.+.
T Consensus 290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 290 FKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred EEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceE
Confidence 3222 256799999887 32222 23566778899999999887655 588999999977542
Q ss_pred EEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+.+...-. -.+...|.++|....|-..|.+|-.||+..
T Consensus 368 vaevevGl---GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGL---GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCC---CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22221111 123445777887667778899999999987
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.99 E-value=0.0057 Score=49.82 Aligned_cols=239 Identities=12% Similarity=0.086 Sum_probs=137.3
Q ss_pred EEEeCCCCEEEEEe----------CCCcEEEEcCCCCeeEEEEeccCc-------cEEEEEEcCCCCEEEEE--eCCCcE
Q 023772 24 ARFNGDGNYCLSCG----------KDRTIRLWNPHRGIHIKTYKSHGR-------EVRDVHVTADNSKLISC--GGDRQI 84 (277)
Q Consensus 24 ~~~~~~~~~l~s~s----------~d~~v~iwd~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~l~t~--s~d~~v 84 (277)
+..+|+++.+++++ ..-.|.+||..+-.....+.-..+ ......++.++++++.. +...+|
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV 120 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV 120 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE
Confidence 55789999888653 235789999999877766543322 23456788888877654 566789
Q ss_pred EEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce---EeeccccCcEE---EEEecCCe
Q 023772 85 FYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI---QIIDSFQDSVM---SVCLTKTE 158 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~ 158 (277)
-|-|++.++.+..+.--. +...+-.....+.+-+.||++.-..+.....+.. ..+....+++. .+......
T Consensus 121 tVVDl~~~kvv~ei~~PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~ 197 (342)
T PF06433_consen 121 TVVDLAAKKVVGEIDTPG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTTTEEEEEEEGTS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTE
T ss_pred EEEECCCCceeeeecCCC---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCe
Confidence 999999988877665321 2222222234577778889888887764322211 11111112111 11122334
Q ss_pred EEEeecCCcEEEEEccCCcc-----cccCC---------CCCeeEEEEeCCCCEEEEEe--------cCC--eEEEEECC
Q 023772 159 IIGGSVDGTVRTFDIRVGRE-----LSDDL---------GQPVNCISMSNDGNCILASC--------LDS--TLRLLDRS 214 (277)
Q Consensus 159 ~~~g~~d~~i~i~d~~~~~~-----~~~~~---------~~~v~~~~~s~~~~~l~~~~--------~d~--~i~~wd~~ 214 (277)
++--+.+|.++--|+..... +.... ..-..-+++++..+.|..-- .|+ .|-++|+.
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 54467788887777754331 11000 12245578887665554431 222 36677899
Q ss_pred CCceEEEEeccccceeeeeeEecCCCc-eEEe-ecCCCeEEEEECcCccceeeecc
Q 023772 215 TGELLQEYKGHICKSFKTDCCLTNSDA-HVTG-GSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s-gs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
+++.+..+.... ...+...+.+++ +|.+ ...++.+.+||..+|++++++++
T Consensus 278 t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 278 THKRVARIPLEH---PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTEEEEEEEEEE---EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCeEEEEEeCCC---ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 999998886431 223445566554 5544 45689999999999999999884
No 335
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.97 E-value=3.6e-05 Score=40.82 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=34.6
Q ss_pred CeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 023772 50 GIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd 88 (277)
+.+...+..|...|.++.|.+.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345677788999999999999999999999999999996
No 336
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00031 Score=59.40 Aligned_cols=140 Identities=24% Similarity=0.437 Sum_probs=94.4
Q ss_pred CCCE-EEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC-------EEEEEeCCCcEEEEeCccCCCcceEee
Q 023772 71 DNSK-LISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-------VVVSAGYDQSLRAWDCRSHSTEPIQII 142 (277)
Q Consensus 71 ~~~~-l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-------~l~s~~~d~~i~iwd~~~~~~~~~~~~ 142 (277)
+.++ +.++.....++-.|++.|+.+..+.-|.. |+-+.+.|+.+ .-+.|-.|..|.-||+|-.....+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 3344 44566667889999999999999998776 77777877642 234467788999999985443222222
Q ss_pred ccccC----cEEEEEec-CCeEEEeecCCcEEEEEccCCcc---cccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 143 DSFQD----SVMSVCLT-KTEIIGGSVDGTVRTFDIRVGRE---LSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 143 ~~~~~----~~~~~~~~-~~~~~~g~~d~~i~i~d~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
+.++- ...+.... ..++++|+.+|.||+||- .++. .....+++|..+..+.+|++|++.+ +.++-+-+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 22211 11222222 345999999999999995 3332 2335678999999999999987766 456766664
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.96 E-value=0.0047 Score=54.36 Aligned_cols=183 Identities=13% Similarity=0.050 Sum_probs=104.8
Q ss_pred EEeCCCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEee
Q 023772 25 RFNGDGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----RQIFYWDVSTGRVIRKFR 99 (277)
Q Consensus 25 ~~~~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----~~v~~wd~~~~~~~~~~~ 99 (277)
-+++||+.+. +.-..+.+.+.|..+.+...++.-- +....++++++++++++.+.+ .++..-+..+...+..|.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 3456776654 3334466677787776666666543 355778899999988777532 223232222211111111
Q ss_pred cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccC---CCcceEeeccccCcEEEEE--ecCCe-EEEeecCCcEEEEEc
Q 023772 100 GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSH---STEPIQIIDSFQDSVMSVC--LTKTE-IIGGSVDGTVRTFDI 173 (277)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~-~~~g~~d~~i~i~d~ 173 (277)
... + ..+.++++.... .++.|.+.|.+.. .......+ ........+. +++.+ ++++..+.++.++|+
T Consensus 278 i~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv 350 (635)
T PRK02888 278 IAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDV 350 (635)
T ss_pred hHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEC
Confidence 100 0 022345665554 3678999998761 11111111 1222233344 44455 556677999999999
Q ss_pred cCCccccc-------------CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 174 RVGRELSD-------------DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 174 ~~~~~~~~-------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
.+.+.... ..+......+|+++|+.+.+-..|..|-.||+.+
T Consensus 351 ~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 351 RKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 87553211 1233445678999999888888999999999865
No 338
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.90 E-value=0.0074 Score=49.87 Aligned_cols=176 Identities=14% Similarity=0.167 Sum_probs=100.4
Q ss_pred CcEEEEECCCCceeEEeeccc-CceeEEEE---ecC----CCEEEEEeC----------CCcEEEEeCccC-C-CcceEe
Q 023772 82 RQIFYWDVSTGRVIRKFRGHE-SEVNAVKF---NEY----SSVVVSAGY----------DQSLRAWDCRSH-S-TEPIQI 141 (277)
Q Consensus 82 ~~v~~wd~~~~~~~~~~~~h~-~~v~~i~~---~~~----~~~l~s~~~----------d~~i~iwd~~~~-~-~~~~~~ 141 (277)
..|++.|..+.+.+.++.-.. ..+.++.. ..+ .++++.|.. .|.|.++++... . ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 357888888777766554322 23343333 222 356665542 288999998763 1 011111
Q ss_pred --eccccCcEEEEEecCCeEEEeecCCcEEEEEccCCc-cccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC-C
Q 023772 142 --IDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGR-ELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRST-G 216 (277)
Q Consensus 142 --~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~-~ 216 (277)
.....+++.++..-...++. +..+.|.+|++...+ .... ....++...+....+++++.|..-..+.++..+. .
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~-~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVV-AVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEE-EETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTT
T ss_pred EEEEeecCcceEhhhhCCEEEE-eecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEccC
Confidence 23446778888876666544 446899999998766 2221 1222223333344466999998888888875533 2
Q ss_pred ceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECc
Q 023772 217 ELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
+.+..+.........+.+.+-+++..++.+..+|.+.++...
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 223333322223445556666455688889999999998876
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.86 E-value=0.0038 Score=53.58 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=77.8
Q ss_pred EEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEE-eCcc
Q 023772 55 TYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW-DCRS 133 (277)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw-d~~~ 133 (277)
.+......+..+.++|+++.++.+ .||.-.++.....+... + +.-....|.+ ...++.-...++|+++ +...
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-~----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-F----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-E----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-c----CceeEEEEec-CccEEEEECCCeEEEEEcCcc
Confidence 333344568899999999888874 47777777643333222 2 1223466777 4456666778899996 3332
Q ss_pred CCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 134 HSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
.....+. . +..+..+-. +..+... .++.|.+||..+++.+....-.+|..+.|+++|++++..+.+ .+.+++.
T Consensus 100 ~~~k~i~-~---~~~~~~If~-G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 100 EVVKSIK-L---PFSVEKIFG-GNLLGVK-SSDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp -TT---------SS-EEEEE--SSSEEEE-ETTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred ccceEEc-C---CcccceEEc-CcEEEEE-CCCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2111111 1 112222222 4434443 455899999999887766544558999999999998888765 6888776
Q ss_pred CCC
Q 023772 214 STG 216 (277)
Q Consensus 214 ~~~ 216 (277)
...
T Consensus 173 ~~~ 175 (443)
T PF04053_consen 173 NLE 175 (443)
T ss_dssp -HH
T ss_pred cch
Confidence 433
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.83 E-value=0.013 Score=48.48 Aligned_cols=171 Identities=15% Similarity=0.159 Sum_probs=104.8
Q ss_pred CcEEEEcCCCCeeEEEEecc-CccEEEEEE---cCC----CCEEEEEeC---------C-CcEEEEECCCC----ceeEE
Q 023772 40 RTIRLWNPHRGIHIKTYKSH-GREVRDVHV---TAD----NSKLISCGG---------D-RQIFYWDVSTG----RVIRK 97 (277)
Q Consensus 40 ~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~---~~~----~~~l~t~s~---------d-~~v~~wd~~~~----~~~~~ 97 (277)
..|++.|..+.+.+..+.-. ...+.+++. ..+ ..+|+.|.. . |.+.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36889998887766655432 234555543 322 456665532 2 88999999884 12221
Q ss_pred e--ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC-CcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 98 F--RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS-TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 98 ~--~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
. ....++|.++... ++ .++. +.++.|.+|++.... ..+..... .+..+.++...++.++.|...+.+.++...
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~-~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVV-AVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEE-EETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEE-eecCEEEEEEccCcccchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 1 2347889888877 33 3433 335789999997655 22222222 234677777778899999888888876443
Q ss_pred C-Cccc---cc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECC
Q 023772 175 V-GREL---SD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 175 ~-~~~~---~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~ 214 (277)
. ...+ .. .....+.++.|-++++.++.+..+|.+.++...
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 1211 11 223457788887666789999999999998764
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=0.00015 Score=62.36 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=75.3
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR-DVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
.-.|..+.|+|.-+++|.+-.+|.+.+.... -..+-++.-|..+++ +++|.|+|+.|+.|-.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3457889999999999999999999999877 556778877788888 99999999999999999999999999988776
Q ss_pred Eeec-ccCceeEEEEe
Q 023772 97 KFRG-HESEVNAVKFN 111 (277)
Q Consensus 97 ~~~~-h~~~v~~i~~~ 111 (277)
.+.. -..+|..+.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 5321 23344444443
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.81 E-value=0.016 Score=49.14 Aligned_cols=226 Identities=10% Similarity=0.116 Sum_probs=124.9
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCe-------------------------------------------eEEEE
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHRGI-------------------------------------------HIKTY 56 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~-------------------------------------------~~~~~ 56 (277)
.|+.+.|+++...|+.+-..|.|-||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998888999999999998532110 11122
Q ss_pred eccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--eec------ccCceeEEEEe-----cCC---CEEEEE
Q 023772 57 KSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK--FRG------HESEVNAVKFN-----EYS---SVVVSA 120 (277)
Q Consensus 57 ~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~--~~~------h~~~v~~i~~~-----~~~---~~l~s~ 120 (277)
+...++|++++.+ +-.+++.|..+|.+.+.|++....+.. +.. ....++++.|. .|+ -.++.|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446889999997 667899999999999999977666654 122 23467778775 222 368888
Q ss_pred eCCCcEEEEeCccCCCc--ceE---eeccccCcEEEEEe-cC----------------------CeEEEeecCCcEEEEE
Q 023772 121 GYDQSLRAWDCRSHSTE--PIQ---IIDSFQDSVMSVCL-TK----------------------TEIIGGSVDGTVRTFD 172 (277)
Q Consensus 121 ~~d~~i~iwd~~~~~~~--~~~---~~~~~~~~~~~~~~-~~----------------------~~~~~g~~d~~i~i~d 172 (277)
...|.+.+|.+...... .+. ....+.+++..+.+ +. ..++....+..+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 99999999987521111 111 11123344433332 10 1355566688899999
Q ss_pred ccCCcccccCCCCCe--eEEEE-----eCCCCEEEEEecCCeEEEEECCCCceEEEEeccc--cceeeeeeEecCCCceE
Q 023772 173 IRVGRELSDDLGQPV--NCISM-----SNDGNCILASCLDSTLRLLDRSTGELLQEYKGHI--CKSFKTDCCLTNSDAHV 243 (277)
Q Consensus 173 ~~~~~~~~~~~~~~v--~~~~~-----s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 243 (277)
+.+.+........+. ..+.+ ...+..|++-..+|.+++|.+-.-+.+..+.-.. .......++++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 887665443333322 23334 2345667778899999999998877776655321 11122345567777665
Q ss_pred Eee
Q 023772 244 TGG 246 (277)
Q Consensus 244 ~sg 246 (277)
+-.
T Consensus 322 ~~~ 324 (395)
T PF08596_consen 322 YWT 324 (395)
T ss_dssp EE-
T ss_pred EEe
Confidence 543
No 343
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.77 E-value=0.024 Score=50.14 Aligned_cols=235 Identities=14% Similarity=0.116 Sum_probs=129.4
Q ss_pred CEEEEEeCCCcEEEEcCCCCeeEEEEecc--C--ccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEeec
Q 023772 31 NYCLSCGKDRTIRLWNPHRGIHIKTYKSH--G--REVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFRG 100 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~--~~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~~ 100 (277)
..++.++.|+.+.-.|..+|+.+-.+... . ..+.+.-...++ .++.+. .++.|..+|.++|+.+.++..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 45667788899999999999887655421 1 112221111233 455443 368999999999998766432
Q ss_pred cc-------------------------------Ccee-EEEEecCCCEEEEEeCCC----------------cEEEEeCc
Q 023772 101 HE-------------------------------SEVN-AVKFNEYSSVVVSAGYDQ----------------SLRAWDCR 132 (277)
Q Consensus 101 h~-------------------------------~~v~-~i~~~~~~~~l~s~~~d~----------------~i~iwd~~ 132 (277)
-. ..++ .+.+.+...+++.+..+. .|.--|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 11 1121 235555555665555331 23333444
Q ss_pred cCCCcceEeeccc--------cCc-EEEEEecCC---eEEEeecCCcEEEEEccCCccccc-----------CCC-----
Q 023772 133 SHSTEPIQIIDSF--------QDS-VMSVCLTKT---EIIGGSVDGTVRTFDIRVGRELSD-----------DLG----- 184 (277)
Q Consensus 133 ~~~~~~~~~~~~~--------~~~-~~~~~~~~~---~~~~g~~d~~i~i~d~~~~~~~~~-----------~~~----- 184 (277)
+++.........| ..+ ...+..++. .++.+..+|.+.+.|-++++.+.. ...
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 3322211111111 111 122223333 366788889999999887765310 000
Q ss_pred ---------------------------CCeeEEEEeCCCCEEEEEecC--------------------------------
Q 023772 185 ---------------------------QPVNCISMSNDGNCILASCLD-------------------------------- 205 (277)
Q Consensus 185 ---------------------------~~v~~~~~s~~~~~l~~~~~d-------------------------------- 205 (277)
.....++++|+..++.....+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 011225677766555443332
Q ss_pred -CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 206 -STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 206 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
+.|.-+|+.+++.+..+.... .. ....+...+.+++.++.||.++.+|.++|+.+-+++-.
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~-p~--~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDF-PL--WGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCC-CC--CCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 457778888888776654321 10 01112224557777889999999999999998777643
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.76 E-value=0.0048 Score=41.59 Aligned_cols=99 Identities=16% Similarity=0.202 Sum_probs=62.4
Q ss_pred eeEEEEec---C-CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEE-EecCCeEEEeecCCcEEEEEccCCccc
Q 023772 105 VNAVKFNE---Y-SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSV-CLTKTEIIGGSVDGTVRTFDIRVGREL 179 (277)
Q Consensus 105 v~~i~~~~---~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~d~~i~i~d~~~~~~~ 179 (277)
|++|++.. + .+.|+.|+.|..|++|+-.. .+..+... ..+..+ .+.+..++.+..+|+|-+|+- ..+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e----~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~-~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE----IVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDR-SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc----EEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeC-cceee
Confidence 45555543 3 25788999999999997432 22222222 334433 445667999999999999985 33445
Q ss_pred ccCCCCCeeEEEEeC-C--C-CEEEEEecCCeEE
Q 023772 180 SDDLGQPVNCISMSN-D--G-NCILASCLDSTLR 209 (277)
Q Consensus 180 ~~~~~~~v~~~~~s~-~--~-~~l~~~~~d~~i~ 209 (277)
.....+.+.++.+.. + | ..|++|-.+|.|-
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555555666665443 2 2 3588888888763
No 345
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.74 E-value=0.0052 Score=41.43 Aligned_cols=100 Identities=13% Similarity=0.195 Sum_probs=67.0
Q ss_pred EEEEEEeC---CC-CEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 21 VLAARFNG---DG-NYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 21 V~~~~~~~---~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
|+++++.+ +| +.|+.||.|..||+|+-. +.+..+..+ ..|.++.-... .+++.+..+|+|-+|+- .+.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 33 689999999999999844 456666654 56777776655 67889999999999975 33444
Q ss_pred EeecccCceeEEEEecC---C-CEEEEEeCCCcEE
Q 023772 97 KFRGHESEVNAVKFNEY---S-SVVVSAGYDQSLR 127 (277)
Q Consensus 97 ~~~~h~~~v~~i~~~~~---~-~~l~s~~~d~~i~ 127 (277)
..+.. ..+.++.+..- + ..|++|=.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44432 33444554332 2 2577777777764
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.016 Score=46.70 Aligned_cols=228 Identities=14% Similarity=0.186 Sum_probs=128.2
Q ss_pred CCCCEEEEEeCCCcEEEEcC-CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE---------
Q 023772 28 GDGNYCLSCGKDRTIRLWNP-HRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK--------- 97 (277)
Q Consensus 28 ~~~~~l~s~s~d~~v~iwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~--------- 97 (277)
..++.|+-|.++| +.+++. ......+..+ ..+|..+.+.++-+.++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578888988888 899988 3333333333 33599999999887776654 59999999875433221
Q ss_pred -----eecccCceeEEE--EecCCCEEEEEeCCCcEEEEeCccCCC---cceEeeccccCcEEEEEecCCeEEEeecCCc
Q 023772 98 -----FRGHESEVNAVK--FNEYSSVVVSAGYDQSLRAWDCRSHST---EPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT 167 (277)
Q Consensus 98 -----~~~h~~~v~~i~--~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 167 (277)
-......+...+ -...+...+.......|.+|....... .....+ ..+..+..+.+.++.++.|..+ .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~~~~i~v~~~~-~ 158 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFLGNKICVGTSK-G 158 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEeCCEEEEEeCC-c
Confidence 011222343333 122344444455666899988765321 122222 2346677788888888777644 4
Q ss_pred EEEEEccCCcc--cccCC------------CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEE--EEeccccceee
Q 023772 168 VRTFDIRVGRE--LSDDL------------GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQ--EYKGHICKSFK 231 (277)
Q Consensus 168 i~i~d~~~~~~--~~~~~------------~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~ 231 (277)
..+.|+.++.. +.... ..++..+... ++.+|++ .|..-...|. .|+..+ .+. ... ..
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--~~~~g~fv~~-~G~~~r~~~i~-W~~--~p 231 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--YDNIGVFVNK-NGEPSRKSTIQ-WSS--AP 231 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--ecceEEEEcC-CCCcCcccEEE-cCC--ch
Confidence 66778875432 21110 1233334443 3455554 2333344454 344333 111 111 11
Q ss_pred eeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCcc
Q 023772 232 TDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 232 ~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
...++ ...|+++-+. +.|.||++.++++++.+..++.
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEECCCE
Confidence 22222 2346666554 5699999999999999986643
No 347
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.73 E-value=8.5e-06 Score=69.87 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=99.7
Q ss_pred cceeeccCCcEEEEEEeC-CCCEEEEE----eCCCcEEEEcCCCC--eeEE--EEec-cCccEEEEEEcCCCCEEEEEeC
Q 023772 11 ANVLKGHEGAVLAARFNG-DGNYCLSC----GKDRTIRLWNPHRG--IHIK--TYKS-HGREVRDVHVTADNSKLISCGG 80 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~-~~~~l~s~----s~d~~v~iwd~~~~--~~~~--~~~~-h~~~v~~~~~~~~~~~l~t~s~ 80 (277)
.....+|..+.++++|++ |.+.||.| -.|..+.|||+.++ .+.. .|.. -.....+++|..+.+.+++|..
T Consensus 95 ~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 95 AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred ceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 344567888999999998 55666665 35678999998775 1111 1221 2334568889888889999999
Q ss_pred CCcEEEEECCCCceeEEeecccCceeEEEEec-CCCEEEEEeCCCcEEEEe-CccCCCcceEeeccc----cCcEEEEEe
Q 023772 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE-YSSVVVSAGYDQSLRAWD-CRSHSTEPIQIIDSF----QDSVMSVCL 154 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~~~~~----~~~~~~~~~ 154 (277)
.+.++++|+...... ...-.+..+..+.+.| ...++++ ..||.|-+|| .+... .++++.... +.....+.+
T Consensus 175 sr~~~ifdlRqs~~~-~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnie-npl~~i~~~~N~~~~~l~~~ay 251 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDS-VSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIE-NPLQIILRNENKKPKQLFALAY 251 (783)
T ss_pred cchhhhhhhhhhhhh-hhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhc-cHHHHHhhCCCCcccceeeEEe
Confidence 999999998743211 1111244566678888 5666665 5599999999 33221 122221111 112444444
Q ss_pred cCC--e-EEEe-ecCCcEEEEEcc
Q 023772 155 TKT--E-IIGG-SVDGTVRTFDIR 174 (277)
Q Consensus 155 ~~~--~-~~~g-~~d~~i~i~d~~ 174 (277)
.|. . +++. -..++|+.||+.
T Consensus 252 cPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 252 CPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccCCcchhhhhccCcceEEEeccc
Confidence 433 2 3333 345789999985
No 348
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.71 E-value=0.025 Score=48.49 Aligned_cols=238 Identities=13% Similarity=0.101 Sum_probs=120.3
Q ss_pred EEEEEEeCCCCEEE-EEeCC----CcEEEEcCCCCeeEEEE-eccCccEEEEEEcCCCCEEEEEeCC-----------Cc
Q 023772 21 VLAARFNGDGNYCL-SCGKD----RTIRLWNPHRGIHIKTY-KSHGREVRDVHVTADNSKLISCGGD-----------RQ 83 (277)
Q Consensus 21 V~~~~~~~~~~~l~-s~s~d----~~v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~d-----------~~ 83 (277)
+....++|+|++|+ +-+.. .++++.|+.+|+.+... ... .-..+.|.++++.|+-...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34678899999888 33444 45999999999766532 221 12239999998877655433 24
Q ss_pred EEEEECCCCce--eEEeecccCc--eeEEEEecCCCEEEEE-eCCC---cEEEEeCccC---CCcceEeeccccCcEEEE
Q 023772 84 IFYWDVSTGRV--IRKFRGHESE--VNAVKFNEYSSVVVSA-GYDQ---SLRAWDCRSH---STEPIQIIDSFQDSVMSV 152 (277)
Q Consensus 84 v~~wd~~~~~~--~~~~~~h~~~--v~~i~~~~~~~~l~s~-~~d~---~i~iwd~~~~---~~~~~~~~~~~~~~~~~~ 152 (277)
|+.|.+.+... ...|...... ...+..++++++++.. .... .+.+.++... .................+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888876532 2233333332 4578889999886643 3333 3666666543 122222233333333444
Q ss_pred EecCCeEEEee----cCCcEEEEEccCCcc-----cccCCCC--CeeEEEEeCCCCEEEEE-ecCC--eEEEEECCCCce
Q 023772 153 CLTKTEIIGGS----VDGTVRTFDIRVGRE-----LSDDLGQ--PVNCISMSNDGNCILAS-CLDS--TLRLLDRSTGEL 218 (277)
Q Consensus 153 ~~~~~~~~~g~----~d~~i~i~d~~~~~~-----~~~~~~~--~v~~~~~s~~~~~l~~~-~~d~--~i~~wd~~~~~~ 218 (277)
...+..+..-+ ..+.|...++..... ....... .+..+.. .+.+|+.. ..++ .|+++|+..+..
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcE
Confidence 44454433222 234565666665432 1112222 3444443 44455544 4444 578899983344
Q ss_pred EEEEeccccceeeeeeEecCCCc--eEEee--cCCCeEEEEECcCccce
Q 023772 219 LQEYKGHICKSFKTDCCLTNSDA--HVTGG--SEDGYIYFWDLVDASVV 263 (277)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~--~l~sg--s~d~~i~iwd~~~~~~~ 263 (277)
......-.... .......+++. ++... ..-+.++-||+.+++..
T Consensus 362 ~~~~~~p~~g~-v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 362 SREIPLPEAGS-VSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEESSSSSE-EEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EeeecCCcceE-EeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33333211111 11111122222 22222 24567888999888653
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=0.017 Score=44.98 Aligned_cols=105 Identities=12% Similarity=0.087 Sum_probs=76.0
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEE
Q 023772 29 DGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAV 108 (277)
Q Consensus 29 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i 108 (277)
...+++-||..+.++--|..+|+.+-.-.. ...+.+-+.- -+++++.|...|.+.+.+.++|.....+..-..-=...
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 356778889999999999999876543321 2233333332 46779999999999999999998777665432222234
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 109 KFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
...+++.++..++.|++...-|.++..
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccc
Confidence 566788999999999999999987643
No 350
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.029 Score=47.59 Aligned_cols=199 Identities=12% Similarity=0.154 Sum_probs=131.1
Q ss_pred EEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEe
Q 023772 23 AARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG---DRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 23 ~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~---d~~v~~wd~~~~~~~~~~ 98 (277)
.+..++.+..+ ++...+..+.+.|..+.+.......- .....++++++++.+..+.. ++++.+.|..+++.+.+.
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 56777777744 45556699999998777666655432 26788999999988876655 689999999999888875
Q ss_pred ecccCceeEEEEecCCCEEEEE-eCCCcEEEEeCccCCCcc-eE--eecccc-CcEEEEEecCCeEEEeec---CCcEEE
Q 023772 99 RGHESEVNAVKFNEYSSVVVSA-GYDQSLRAWDCRSHSTEP-IQ--IIDSFQ-DSVMSVCLTKTEIIGGSV---DGTVRT 170 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~-~~--~~~~~~-~~~~~~~~~~~~~~~g~~---d~~i~i 170 (277)
..-..+ ..+++.|+++.+..+ ..++.+.+.|.......+ .. ...... ..-..+..++..+...-. ++.+..
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 544455 789999999965554 478999999965432221 00 011111 112334445554333222 357888
Q ss_pred EEccCCccccc--CCCC-CeeEEEEeCCCCEEEEE-ecCCeEEEEECCCCceEEEEe
Q 023772 171 FDIRVGRELSD--DLGQ-PVNCISMSNDGNCILAS-CLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 171 ~d~~~~~~~~~--~~~~-~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~ 223 (277)
.|...+..... ..+. ....+.++|+|+++... +..+.+.+-|..+......+.
T Consensus 236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 88877654433 1112 45668899999987776 445789999988877766544
No 351
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.65 E-value=0.029 Score=47.59 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=57.4
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecccc-ceeeeeeEecCC---------------Cc-eEEeecCC
Q 023772 187 VNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHIC-KSFKTDCCLTNS---------------DA-HVTGGSED 249 (277)
Q Consensus 187 v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~-~l~sgs~d 249 (277)
+.+++.+|.+++.++...=|.|.++|+.++..++.++|--. ........-..+ .. +++-+-.-
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR 389 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR 389 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence 67789999999888877778999999999988887776321 111111100000 11 34456788
Q ss_pred CeEEEEECcCccceeeecc
Q 023772 250 GYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 250 ~~i~iwd~~~~~~~~~~~~ 268 (277)
|.|.||.+.+|..+..+..
T Consensus 390 g~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 390 GILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred CeEEEEecCCCCEEEEEEe
Confidence 9999999999999988874
No 352
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.58 E-value=0.014 Score=52.08 Aligned_cols=230 Identities=13% Similarity=0.143 Sum_probs=117.7
Q ss_pred eCCCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q 023772 27 NGDGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADNSKLISCGGD------RQIFYWDVSTGR 93 (277)
Q Consensus 27 ~~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~d------~~v~~wd~~~~~ 93 (277)
+..+.+++.||.+ ..+..||..++............ -.++++ .++...++||.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 3345566677777 46788898887544333222222 233333 355777888888 356778876654
Q ss_pred --eeEEeecccCceeEEEEecCCCEEEEEeCCCc-----EEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCC
Q 023772 94 --VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQS-----LRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDG 166 (277)
Q Consensus 94 --~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 166 (277)
.+..+...+.... +. .-++.+.+.||.||. +..||..+..-..+..+.........+.+.+...+.||.++
T Consensus 361 W~~~a~M~~~R~~~~-v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG-VA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eeccCCccCccccce-eE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 1112221111111 11 124677888888854 77788765433222222222223334455566667777554
Q ss_pred ------cEEEEEccCCcc--cccCC-CCCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEeccccceeee
Q 023772 167 ------TVRTFDIRVGRE--LSDDL-GQPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGHICKSFKT 232 (277)
Q Consensus 167 ------~i~i~d~~~~~~--~~~~~-~~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~ 232 (277)
.+..||..++.= +.... .-.-..++. -++..++.|+.|+ ++..||..+.+.... ..........
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v-~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMV-APMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEc-ccCccccccc
Confidence 466788876531 11100 011111232 2566778888776 367788887765432 2111111111
Q ss_pred eeEecCCCceEEeecCCCe-----EEEEECcCccc
Q 023772 233 DCCLTNSDAHVTGGSEDGY-----IYFWDLVDASV 262 (277)
Q Consensus 233 ~~~~~~~~~~l~sgs~d~~-----i~iwd~~~~~~ 262 (277)
.++. -++...+.|+.||. |..||..+.+.
T Consensus 517 g~~~-~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W 550 (571)
T KOG4441|consen 517 GVVV-LGGKLYAVGGFDGNNNLNTVECYDPETDTW 550 (571)
T ss_pred cEEE-ECCEEEEEecccCccccceeEEcCCCCCce
Confidence 1222 23455555556553 66677766544
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0027 Score=56.99 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=62.4
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
+++++|+|+.-.|+.|-.-|.+-+|...+.+.-.....|..+|..+.|+++|..++|+..=|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3569999999899999999999999988776666667799999999999999999999999999999875
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.50 E-value=0.044 Score=48.53 Aligned_cols=190 Identities=17% Similarity=0.246 Sum_probs=112.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeeccc-Ccee----------EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE
Q 023772 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVN----------AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ 140 (277)
Q Consensus 72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~----------~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 140 (277)
+.+++.++.++.|.-.|.++|+.+.++.... ..+. .+.+. +..++.++.|+.+.-.|..+++.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4677778888999999999999887765321 1111 11221 346667788999999998765432211
Q ss_pred eecccc--CcEE-EEEecCCeEEEee------cCCcEEEEEccCCcccccCC----------------------------
Q 023772 141 IIDSFQ--DSVM-SVCLTKTEIIGGS------VDGTVRTFDIRVGRELSDDL---------------------------- 183 (277)
Q Consensus 141 ~~~~~~--~~~~-~~~~~~~~~~~g~------~d~~i~i~d~~~~~~~~~~~---------------------------- 183 (277)
...... ..+. .-......++.+. .+|.|.-+|.++++.+-...
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 111110 0011 1111233455543 26789989988876432100
Q ss_pred -----C-CCeeEEEEeCCCCEEEEEecC-----C-----------eEEEEECCCCceEEEEecccccee-------eeee
Q 023772 184 -----G-QPVNCISMSNDGNCILASCLD-----S-----------TLRLLDRSTGELLQEYKGHICKSF-------KTDC 234 (277)
Q Consensus 184 -----~-~~v~~~~~s~~~~~l~~~~~d-----~-----------~i~~wd~~~~~~~~~~~~~~~~~~-------~~~~ 234 (277)
+ .....++++|+...+..+... + +|.-.|+++|+....|+...+... ....
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0 112346788876666655421 2 567788999999887764221111 1111
Q ss_pred EecCCCc---eEEeecCCCeEEEEECcCccce
Q 023772 235 CLTNSDA---HVTGGSEDGYIYFWDLVDASVV 263 (277)
Q Consensus 235 ~~~~~~~---~l~sgs~d~~i~iwd~~~~~~~ 263 (277)
-+..+|+ .++.+.++|.+++.|..+|+++
T Consensus 307 d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 1223555 6889999999999999999986
No 355
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.49 E-value=0.032 Score=44.00 Aligned_cols=180 Identities=11% Similarity=0.122 Sum_probs=97.7
Q ss_pred eeeccCCcEEEEEEeCCCCEE-EEEeCCCcEEEEcCCCCeeEEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 023772 13 VLKGHEGAVLAARFNGDGNYC-LSCGKDRTIRLWNPHRGIHIKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVS 90 (277)
Q Consensus 13 ~l~~H~~~V~~~~~~~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~ 90 (277)
.+.+=...+..+.|+|+.+.| +.....+.|...+. +|+.++.+.-. .+..-.+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 355656669999999986644 45677777777775 57777776544 3678899998888777776678999999884
Q ss_pred CCc--e----eEEee-----cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772 91 TGR--V----IRKFR-----GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI 159 (277)
Q Consensus 91 ~~~--~----~~~~~-----~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
... . ...+. .++..+-.++|.+..+.++.+-......+|.++...
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~------------------------ 150 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP------------------------ 150 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------------------------
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc------------------------
Confidence 321 1 11121 245568899999987777766555445555443210
Q ss_pred EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCC-CCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772 160 IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSND-GNCILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
.+..+.+.+...-.. ....-..+..+.++|. +.+++.+...+.|-.+| .+|+.+..+.
T Consensus 151 ----~~~~~~~~~~~~~~~-~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 151 ----GGFDLFVSDDQDLDD-DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp -----SS--EEEE-HHHH--HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred ----Cccceeecccccccc-ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 011111111110000 0111234678899986 45667778888999999 5688776654
No 356
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.47 E-value=0.004 Score=55.95 Aligned_cols=109 Identities=6% Similarity=0.072 Sum_probs=83.4
Q ss_pred EEEEEeCCCCEEEEEe----CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772 22 LAARFNGDGNYCLSCG----KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK 97 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s----~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~ 97 (277)
+-..|+|...+++.++ ..|+|-||- .+|++.+...- .-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3456778777777554 458888884 45554433221 12346799999988888888889999999887666555
Q ss_pred eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
...|+.+|..+.|+++|..++|+..=|.+.+|...
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 66799999999999999999999999999999764
No 357
>PHA02713 hypothetical protein; Provisional
Probab=97.45 E-value=0.006 Score=54.33 Aligned_cols=194 Identities=10% Similarity=0.056 Sum_probs=92.0
Q ss_pred CCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc--ee
Q 023772 29 DGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-----QIFYWDVSTGR--VI 95 (277)
Q Consensus 29 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~~--~~ 95 (277)
++...+.||.+ ..+-.||+.++.....-.-....-.......+++..+.||.++ ++..||..+++ .+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 45566666653 2466778776643221111111111122223566667777653 47889987642 22
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCCC-----------------------cEEEEeCccCCCcceEeeccccCcEEEE
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----------------------SLRAWDCRSHSTEPIQIIDSFQDSVMSV 152 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 152 (277)
..+.........+ .-++++.+.||.++ ++..||+.+..-..+..+.........+
T Consensus 383 ~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~ 460 (557)
T PHA02713 383 PDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV 460 (557)
T ss_pred CCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEE
Confidence 2222111111112 22466777777653 4677887653211111111111111223
Q ss_pred EecCCeEEEeecC------CcEEEEEccCCccccc--CCCC--CeeEEEEeCCCCEEEEEecCC--eEEEEECCCCceEE
Q 023772 153 CLTKTEIIGGSVD------GTVRTFDIRVGRELSD--DLGQ--PVNCISMSNDGNCILASCLDS--TLRLLDRSTGELLQ 220 (277)
Q Consensus 153 ~~~~~~~~~g~~d------~~i~i~d~~~~~~~~~--~~~~--~v~~~~~s~~~~~l~~~~~d~--~i~~wd~~~~~~~~ 220 (277)
...+.-.+.|+.+ ..+..||..+...+.. .... ....++. -+|..+++|+.|+ .+..||..+++...
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCcccccccc
Confidence 3444445556543 2356799886212211 1111 1111222 2678888999888 67778887776544
Q ss_pred EEecc
Q 023772 221 EYKGH 225 (277)
Q Consensus 221 ~~~~~ 225 (277)
....|
T Consensus 540 ~~~~~ 544 (557)
T PHA02713 540 ICHQH 544 (557)
T ss_pred hhhhc
Confidence 33333
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=0.06 Score=45.65 Aligned_cols=246 Identities=14% Similarity=0.122 Sum_probs=149.4
Q ss_pred EEEEEEeCCCCEEEEE--eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEE
Q 023772 21 VLAARFNGDGNYCLSC--GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIRK 97 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~~ 97 (277)
...+.+.+++..+... ..+ .+..-+............-......+++++.++++ ++...++.|.+.|.++.+....
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 4456677777544433 233 45555544222111111111345677888888754 4555678999999888777766
Q ss_pred eecccCceeEEEEecCCCEEEEEeC---CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCcEEEEEc
Q 023772 98 FRGHESEVNAVKFNEYSSVVVSAGY---DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGTVRTFDI 173 (277)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~i~i~d~ 173 (277)
..--. .-..+.+.++++.+..+.. ++++.+.|..+...... ........-..+..+++.++ +-..++.+.+.|.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-EecCCCcceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 54333 4456899999877666655 67888887655432222 21111112233444455444 4457889999997
Q ss_pred cCCcccc------cCCCCCeeEEEEeCCCCEEEEEecC---CeEEEEECCCCceEEE-EeccccceeeeeeEecCCCceE
Q 023772 174 RVGRELS------DDLGQPVNCISMSNDGNCILASCLD---STLRLLDRSTGELLQE-YKGHICKSFKTDCCLTNSDAHV 243 (277)
Q Consensus 174 ~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l 243 (277)
....... .........+.++|+|+++...-.. +.+...|..++..... +.... . ........|++.++
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~ 267 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAA 267 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEE
Confidence 6654442 1223345678999999966555433 5899999988877654 22221 1 23345678999988
Q ss_pred Eee-cCCCeEEEEECcCccceeeeccCcc
Q 023772 244 TGG-SEDGYIYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 244 ~sg-s~d~~i~iwd~~~~~~~~~~~~h~~ 271 (277)
... +..+.+.+-|..+..+...+.....
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 876 4458899999999888877665443
No 359
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.42 E-value=0.092 Score=48.42 Aligned_cols=232 Identities=15% Similarity=0.163 Sum_probs=119.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCc--------cEEEEEEc----------------CCCCEEEEEeCCCcEE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGR--------EVRDVHVT----------------ADNSKLISCGGDRQIF 85 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--------~v~~~~~~----------------~~~~~l~t~s~d~~v~ 85 (277)
+..++.|+.++.|.-.|..+|+.+-.+..... .++.+.+- .+.++|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 56778888899999999999988777653221 12223332 1345888899999999
Q ss_pred EEECCCCceeEEeecccCcee-------------EEEEec--CCCEEEEEeC----------CCcEEEEeCccCCCcceE
Q 023772 86 YWDVSTGRVIRKFRGHESEVN-------------AVKFNE--YSSVVVSAGY----------DQSLRAWDCRSHSTEPIQ 140 (277)
Q Consensus 86 ~wd~~~~~~~~~~~~h~~~v~-------------~i~~~~--~~~~l~s~~~----------d~~i~iwd~~~~~~~~~~ 140 (277)
-.|.++|+....|.. ...|. .+.-.| .+..++.|+. +|.|+-+|.++++.....
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999877642 21111 001111 1335555542 688999998876532221
Q ss_pred eeccccCcEEEEEecCCeEEEeecCC-cEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772 141 IIDSFQDSVMSVCLTKTEIIGGSVDG-TVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
.... +.. ......+.....++.+. ..-.||.+.+.... ..+.+ +..+-...+.....-..++|.-.|.++|+..
T Consensus 353 ~~g~-p~~-~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~--~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 353 DPGN-PDP-TAPPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQ--TPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred ecCC-CCc-ccCCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCc--cccccCCccccCcccccceEEEEeCCCCceE
Confidence 1110 000 00000111111111111 12223333322111 00000 0000000000001122456777888899888
Q ss_pred EEEeccccce-------eeeeeEecC-CCc---eEEeecCCCeEEEEECcCccceeeec
Q 023772 220 QEYKGHICKS-------FKTDCCLTN-SDA---HVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 220 ~~~~~~~~~~-------~~~~~~~~~-~~~---~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
..|+...+.. .....-+.. +++ .++.++.+|.+++.|.++|+.+-..+
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7775411110 111111222 443 68899999999999999999886543
No 360
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.0059 Score=53.60 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=87.7
Q ss_pred cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCc
Q 023772 59 HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI-RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTE 137 (277)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 137 (277)
+...|.--+++..+++++-|+.-|.+.+|+-..++.. ....+....+..+..+++..+++.|+..|.|.++-++...+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 3455667778888999999999999999998777643 233345566677888999999999999999999988764332
Q ss_pred ceEee----ccccCcEEEEEecCCe--EEEeecCCcEEEEEccC
Q 023772 138 PIQII----DSFQDSVMSVCLTKTE--IIGGSVDGTVRTFDIRV 175 (277)
Q Consensus 138 ~~~~~----~~~~~~~~~~~~~~~~--~~~g~~d~~i~i~d~~~ 175 (277)
....+ ..|...|++++|+++. +.+|...|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 22221 1256778999998765 88999899998877665
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.069 Score=45.73 Aligned_cols=175 Identities=15% Similarity=0.171 Sum_probs=91.7
Q ss_pred cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eeEEeecccCceeEEEEecCC
Q 023772 41 TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR------VIRKFRGHESEVNAVKFNEYS 114 (277)
Q Consensus 41 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~------~~~~~~~h~~~v~~i~~~~~~ 114 (277)
.|+||+. .|+.+..+.--.+.+.++.|..+ ..|+....||.++++|+.... .+....-....+....+...|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 5899985 46677766655589999999875 566677899999999986333 111111112222222333345
Q ss_pred CEEEEEeCCCcEEEEeCccCCCc-ceEeecc----------ccC--cEEEEEecCCeEEEeecCCcEEEEEccCCccccc
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTE-PIQIIDS----------FQD--SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD 181 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~----------~~~--~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~ 181 (277)
-.++++ ++.+.+-+ ....+ ....... ... .+..+..+....+....++.+.+.+-..... .
T Consensus 140 ivvLt~--~~~~~~v~--n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--i 213 (410)
T PF04841_consen 140 IVVLTG--NNRFYVVN--NIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--I 213 (410)
T ss_pred EEEECC--CCeEEEEe--CccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc--c
Confidence 444443 33333322 11110 0000000 000 0111111222233334445555333222111 1
Q ss_pred CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772 182 DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 182 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
....++..|++||+|++++.-..+|.+.+....-.+...++.
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 123589999999999999988889999888765444444443
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0018 Score=59.43 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=76.1
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCee-EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee
Q 023772 28 GDGNYCLSCGKDRTIRLWNPHRGIH-IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN 106 (277)
Q Consensus 28 ~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~ 106 (277)
-.+.+++.|+..|.+-..|....-. ...=+.-.++|++++|+.++..++.|-.+|.|.+||+..+++.+-+..|..+..
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3456788888888888888654311 112223457999999999999999999999999999999998888777766665
Q ss_pred EEEE---ecCCCEEEEEeCCCcEEEEeC
Q 023772 107 AVKF---NEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 107 ~i~~---~~~~~~l~s~~~d~~i~iwd~ 131 (277)
++-+ ..++..++++...|. +|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5544 456667888877776 5654
No 363
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.21 E-value=0.0086 Score=55.78 Aligned_cols=110 Identities=18% Similarity=0.312 Sum_probs=76.4
Q ss_pred EEEEeCCCCEEEEE----eCC-CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEE---eCCCcEEEEECCCCc-
Q 023772 23 AARFNGDGNYCLSC----GKD-RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISC---GGDRQIFYWDVSTGR- 93 (277)
Q Consensus 23 ~~~~~~~~~~l~s~----s~d-~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~---s~d~~v~~wd~~~~~- 93 (277)
.+.|-.||++++.. ..+ +.+||||-+ |..-.+-+.-.+--.+++|-|.|..+++- ..|+.|.+|.-+.-+
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 58999999998872 334 899999976 54433333334445789999999999886 345679998754321
Q ss_pred --eeEEeecccCceeEEEEecCCCEEEE---EeCCCcEEEEeCcc
Q 023772 94 --VIRKFRGHESEVNAVKFNEYSSVVVS---AGYDQSLRAWDCRS 133 (277)
Q Consensus 94 --~~~~~~~h~~~v~~i~~~~~~~~l~s---~~~d~~i~iwd~~~ 133 (277)
-.-.+.....++..++|+.++..|+. ......|++|-..+
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 12223333455899999999999887 55555599997654
No 364
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.21 E-value=0.11 Score=44.40 Aligned_cols=177 Identities=10% Similarity=0.110 Sum_probs=90.6
Q ss_pred cEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC----CcceEeeccccCcEEEEEecCCe
Q 023772 83 QIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS----TEPIQIIDSFQDSVMSVCLTKTE 158 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 158 (277)
.|.+|+. .|+++.++..-.+.+-++.|..+. .|+....||.+++||+.... ...+....-....+.......+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4888875 466666665555889999998854 55566799999999985322 00000000000111111222344
Q ss_pred EEEeecCCcEEEEE-ccCCcc------cccCCC----C-Cee-EEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772 159 IIGGSVDGTVRTFD-IRVGRE------LSDDLG----Q-PVN-CISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 159 ~~~g~~d~~i~i~d-~~~~~~------~~~~~~----~-~v~-~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 225 (277)
++.-..++.+.+.+ ...... +..... . ... ...++.+....+....++.+++.+....+. ...
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~- 215 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---IDS- 215 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---ccC-
Confidence 44444444444322 111100 000000 0 000 023444454455555555666444332211 111
Q ss_pred ccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 226 ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
......+++||+++++|.-..+|.+.+...+=.+.+-++.
T Consensus 216 --~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 216 --DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred --CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 1234667889999999988888999888765555544444
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.002 Score=48.93 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=65.1
Q ss_pred CCEEEEEeCCCcEEEEcCCCC-eeEEEEeccCccEEEEE-EcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-Ccee
Q 023772 30 GNYCLSCGKDRTIRLWNPHRG-IHIKTYKSHGREVRDVH-VTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVN 106 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~v~~~~-~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~ 106 (277)
+..|+.|+.||.|.+|+..-. .....+..-...|.++- ...++.+..+++.|+.++.|+..-++.+.....|+ .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 457788899999999987621 11111111112222222 12234477889999999999999888887777777 5555
Q ss_pred EEEEecCCCEEEEE--eCCCcEEEEeCc
Q 023772 107 AVKFNEYSSVVVSA--GYDQSLRAWDCR 132 (277)
Q Consensus 107 ~i~~~~~~~~l~s~--~~d~~i~iwd~~ 132 (277)
.......++.+..+ |.|..++.|++.
T Consensus 150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 150 ELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred eeEEecCCceEEeeccccchhhhhcchh
Confidence 55555555666665 666666666654
No 366
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0027 Score=54.92 Aligned_cols=74 Identities=5% Similarity=0.075 Sum_probs=65.2
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
-.+.-+.|+|.-..|+++..+|.+-+..+. .+.+.++.-|..++. +++|.|||+.++.|-.||+|++.|...+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 457788999999999999999999999887 777888886777776 99999999999999999999999987643
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.005 Score=56.63 Aligned_cols=108 Identities=20% Similarity=0.314 Sum_probs=74.1
Q ss_pred cEEEEEecCCeEEEeecCCcEEEEEccCCcc--c-ccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE--L-SDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~--~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
.+.+.+.....++.|+..|.+-..|+...-. . ....+.+|++++|+.+|+.++.|-.+|.|.+||...++.++.+.-
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 3444444445577788888888888765322 1 123457999999999999999999999999999999999988876
Q ss_pred cccceeeeee-EecCCCceEEeecCCCeEEEEEC
Q 023772 225 HICKSFKTDC-CLTNSDAHVTGGSEDGYIYFWDL 257 (277)
Q Consensus 225 ~~~~~~~~~~-~~~~~~~~l~sgs~d~~i~iwd~ 257 (277)
+..+....-. -...++..+.++..-|. +|+.
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5443322221 22344446777766665 5653
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.99 E-value=0.17 Score=42.45 Aligned_cols=233 Identities=16% Similarity=0.195 Sum_probs=117.3
Q ss_pred eCCCCEEEEE---------eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-
Q 023772 27 NGDGNYCLSC---------GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR- 96 (277)
Q Consensus 27 ~~~~~~l~s~---------s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~- 96 (277)
|||+++++.. +..+.+.|||+.+++....... ...+....|+|+++.++-.. ++.|.+++..+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 4666666652 3346788999998765443333 56789999999999988775 5789999987774432
Q ss_pred Eeec-------c---------cCceeEEEEecCCCEEEEEeC-CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772 97 KFRG-------H---------ESEVNAVKFNEYSSVVVSAGY-DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI 159 (277)
Q Consensus 97 ~~~~-------h---------~~~v~~i~~~~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
+..+ - -..-.++-|+|+++.|+.... +..|+.+.+........ .......+..-
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP---- 149 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP---- 149 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE------
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC----
Confidence 1111 0 112356779999998877644 34455544322111100 00011111100
Q ss_pred EEeecCC--cEEEEEccCCcccc--c-----CCCCCeeEEEEeCCCCEEEEEecCC-----eEEEEECCCCceEEEEecc
Q 023772 160 IGGSVDG--TVRTFDIRVGRELS--D-----DLGQPVNCISMSNDGNCILASCLDS-----TLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 160 ~~g~~d~--~i~i~d~~~~~~~~--~-----~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~ 225 (277)
..|..+- .+.++|+.+++... . ....-+..+.|.+++..++..-.++ .+.++|..+++....+...
T Consensus 150 k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~ 229 (353)
T PF00930_consen 150 KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET 229 (353)
T ss_dssp BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE
T ss_pred CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec
Confidence 0011111 35567887665321 1 1233577899999998454443222 4667788776554333211
Q ss_pred c-cce-eeeeeEec-C-CCceEEeecCCCe--EEEEECcCccceeeeccCcc
Q 023772 226 I-CKS-FKTDCCLT-N-SDAHVTGGSEDGY--IYFWDLVDASVVAKFKAHSL 271 (277)
Q Consensus 226 ~-~~~-~~~~~~~~-~-~~~~l~sgs~d~~--i~iwd~~~~~~~~~~~~h~~ 271 (277)
. ... ......+. + ++.++.....||. |++++...+. .+.+....-
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~ 280 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDW 280 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCce
Confidence 1 000 11122232 3 4445555557776 4455665554 335543333
No 369
>PHA03098 kelch-like protein; Provisional
Probab=96.98 E-value=0.11 Score=46.19 Aligned_cols=188 Identities=12% Similarity=0.128 Sum_probs=85.7
Q ss_pred CCCCEEEEEeCCC------cEEEEECCCCceeE--EeecccCceeEEEEecCCCEEEEEeCC-----CcEEEEeCccCCC
Q 023772 70 ADNSKLISCGGDR------QIFYWDVSTGRVIR--KFRGHESEVNAVKFNEYSSVVVSAGYD-----QSLRAWDCRSHST 136 (277)
Q Consensus 70 ~~~~~l~t~s~d~------~v~~wd~~~~~~~~--~~~~h~~~v~~i~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~ 136 (277)
.++..++.||.++ .+..||..+++-.. .+........ +. .-++++.+.||.+ ..+..||+.+..-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3456666776542 56778877654211 1111111111 21 2346677777765 3467787764321
Q ss_pred cceEeeccccCcEEEEEecCCeEEEeecC------CcEEEEEccCCc--cccc-CCCCCeeEEEEeCCCCEEEEEecC--
Q 023772 137 EPIQIIDSFQDSVMSVCLTKTEIIGGSVD------GTVRTFDIRVGR--ELSD-DLGQPVNCISMSNDGNCILASCLD-- 205 (277)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d------~~i~i~d~~~~~--~~~~-~~~~~v~~~~~s~~~~~l~~~~~d-- 205 (277)
.....+.............+...+.||.+ +.+..||+.+.+ .... .....-.+++ ..++..++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 371 REEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGISYI 449 (534)
T ss_pred eeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCccCC
Confidence 11110111111112223334445555532 357788887542 1111 0011111222 2355666666543
Q ss_pred ------CeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEeecCC-----CeEEEEECcCccc
Q 023772 206 ------STLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-----GYIYFWDLVDASV 262 (277)
Q Consensus 206 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----~~i~iwd~~~~~~ 262 (277)
..+..||..+++.... ............+. -++++.+.|+.+ +.+..||..+.+.
T Consensus 450 ~~~~~~~~v~~yd~~~~~W~~~-~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKWTEL-SSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCcccceEEEecCCCCceeeC-CCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 1378899887654321 11110111111122 245555555443 5789999887654
No 370
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.004 Score=35.10 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=30.4
Q ss_pred CCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCce
Q 023772 183 LGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGEL 218 (277)
Q Consensus 183 ~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~ 218 (277)
...+|.+++|+|....|+.+..||.|.+|.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999998 4543
No 371
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.98 E-value=0.19 Score=42.77 Aligned_cols=205 Identities=15% Similarity=0.147 Sum_probs=107.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------eeEEe
Q 023772 62 EVRDVHVTADNSKLISCGGDRQIFYWDVSTGR-------------------------------------------VIRKF 98 (277)
Q Consensus 62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~-------------------------------------------~~~~~ 98 (277)
.|+.+.|.++..-|+.|-..|.|-+|.....+ +..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 46777777777777777777777776542110 01112
Q ss_pred ecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc------ccCcEEEEEec-----C-----CeEEEe
Q 023772 99 RGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS------FQDSVMSVCLT-----K-----TEIIGG 162 (277)
Q Consensus 99 ~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~-----~-----~~~~~g 162 (277)
....++|++++.+. --+++.|..+|.+.+.|+|.+.......+.. ....+..+.|. . -.+++|
T Consensus 83 ~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 23467899888864 4589999999999999998643211111111 11223334332 1 137889
Q ss_pred ecCCcEEEEEccC-C-cccc-------cCCCCCeeEEE-EeCC--------------------CCEEEEEecCCeEEEEE
Q 023772 163 SVDGTVRTFDIRV-G-RELS-------DDLGQPVNCIS-MSND--------------------GNCILASCLDSTLRLLD 212 (277)
Q Consensus 163 ~~d~~i~i~d~~~-~-~~~~-------~~~~~~v~~~~-~s~~--------------------~~~l~~~~~d~~i~~wd 212 (277)
...|.+.+|.+.- . ..+. .....++..+. |+.+ -.-++....+..+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998752 1 1111 12233333332 3211 11234445577899999
Q ss_pred CCCCceEEEEeccccceeeeeeEe-----cCCCceEEeecCCCeEEEEECcCccceeeeccC
Q 023772 213 RSTGELLQEYKGHICKSFKTDCCL-----TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
..+.+........ ......+++ ...+..|+.=..+|.|++|.+...+.+..++-+
T Consensus 242 ~~~~k~~~K~~~~--~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDD--PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS---EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeecc--ccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 9877765543322 111122222 234566777789999999999999888877653
No 372
>PHA03098 kelch-like protein; Provisional
Probab=96.96 E-value=0.087 Score=46.89 Aligned_cols=186 Identities=9% Similarity=0.063 Sum_probs=81.9
Q ss_pred CCCEEEEEeCCC------cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc--ee
Q 023772 29 DGNYCLSCGKDR------TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR--VI 95 (277)
Q Consensus 29 ~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~--~~ 95 (277)
++...+.||.++ .+..||..+.+....-.............-++..++.||.+ ..+..||..+++ ..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 345556666543 46678877765432211110111111122256666777765 346778876543 11
Q ss_pred EEeecccCceeEEEEecCCCEEEEEeCC------CcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecC----
Q 023772 96 RKFRGHESEVNAVKFNEYSSVVVSAGYD------QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVD---- 165 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d---- 165 (277)
..+...... .++ ..-++++.+.||.+ ..+..||+.+..-.....+.........+...+..++.|+.+
T Consensus 374 ~~lp~~r~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCcc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC
Confidence 111111111 111 22345666777632 357888876532111111110011112223334444555542
Q ss_pred ----CcEEEEEccCCc--ccccC-CCCCeeEEEEeCCCCEEEEEecC-----CeEEEEECCCCc
Q 023772 166 ----GTVRTFDIRVGR--ELSDD-LGQPVNCISMSNDGNCILASCLD-----STLRLLDRSTGE 217 (277)
Q Consensus 166 ----~~i~i~d~~~~~--~~~~~-~~~~v~~~~~s~~~~~l~~~~~d-----~~i~~wd~~~~~ 217 (277)
..+.+||..+.+ .+... ....-.+++. .++..++.|+.+ ..+..||..+++
T Consensus 452 ~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 452 IKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 137788887643 11111 1111111121 256666666654 357777776654
No 373
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.91 E-value=0.18 Score=41.40 Aligned_cols=199 Identities=14% Similarity=0.196 Sum_probs=112.9
Q ss_pred EEEEeCCCCEEEE--EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEE--
Q 023772 23 AARFNGDGNYCLS--CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVS-TGRVIRK-- 97 (277)
Q Consensus 23 ~~~~~~~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~-~~~~~~~-- 97 (277)
..+++.||++++. .+--.+|-|-|+..++.+.++.-. .|..+-=. .+..+.+-..||++....+. .|+..++
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 3577888887775 455678888899888888877632 33333222 23567788889999988887 4554322
Q ss_pred --eecccCcee-EEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc----------cc--CcEEEEEecCCeEEE-
Q 023772 98 --FRGHESEVN-AVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS----------FQ--DSVMSVCLTKTEIIG- 161 (277)
Q Consensus 98 --~~~h~~~v~-~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~- 161 (277)
|..-..++. .-.+...+..++--+.+|.|+--|+............. .+ -...++....+.+.+
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 111122222 22333444455556888988888876543221111110 00 112333333333322
Q ss_pred --eecCC-------cEEEEEccCCcccccC-CCCCeeEEEEeCCCC-EEEEE-ecCCeEEEEECCCCceEEEEec
Q 023772 162 --GSVDG-------TVRTFDIRVGRELSDD-LGQPVNCISMSNDGN-CILAS-CLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 162 --g~~d~-------~i~i~d~~~~~~~~~~-~~~~v~~~~~s~~~~-~l~~~-~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
.+.++ .|-+||+.+++.+... .++++.++.++.+.+ .|++. ..++.+.+||..+|++++.+.+
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 11121 3667788888776553 356788999998876 44443 4578999999999999988764
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.12 Score=44.42 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=91.7
Q ss_pred CceeEEeecccCceeEEEEecCCCEEEEEe---CC-CcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCC
Q 023772 92 GRVIRKFRGHESEVNAVKFNEYSSVVVSAG---YD-QSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDG 166 (277)
Q Consensus 92 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~---~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~ 166 (277)
+...+.+..-...+..-.|++++..++..+ .. ..+.++++.....+.+..+... .....+.+++.. +++...|+
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~-~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN-NGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc-cCCccCCCCCCEEEEEECCCC
Confidence 333344444445566677888877655442 22 4588889887655444333222 223344455555 44555566
Q ss_pred c--EEEEEccCCcccccCCCC-CeeEEEEeCCCCEEEEEec-CC--eEEEEECCCCceEEEEeccccceeeeeeEecCCC
Q 023772 167 T--VRTFDIRVGRELSDDLGQ-PVNCISMSNDGNCILASCL-DS--TLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSD 240 (277)
Q Consensus 167 ~--i~i~d~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (277)
. |.++|+............ .-..=.|+|+|++|+-.+. .| .|.++|...+.. +.+........ ...++|+|
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~--~p~~SpdG 337 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS--NPVWSPDG 337 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc--CccCCCCC
Confidence 5 556677665533212211 1224579999998876653 33 466777765544 33332221111 34578999
Q ss_pred ceEEeec-CCCe--EEEEECcCcc
Q 023772 241 AHVTGGS-EDGY--IYFWDLVDAS 261 (277)
Q Consensus 241 ~~l~sgs-~d~~--i~iwd~~~~~ 261 (277)
++++.-+ .+|. |.+.|+.++.
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 9877544 3455 6677776655
No 375
>PHA02790 Kelch-like protein; Provisional
Probab=96.85 E-value=0.13 Score=45.19 Aligned_cols=104 Identities=11% Similarity=-0.033 Sum_probs=50.9
Q ss_pred CCCEEEEEeCCC-----cEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCc--eeEEee
Q 023772 29 DGNYCLSCGKDR-----TIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD--RQIFYWDVSTGR--VIRKFR 99 (277)
Q Consensus 29 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d--~~v~~wd~~~~~--~~~~~~ 99 (277)
++.+.+.||.++ ++..||+.+++....-..............++...+.||.+ .++..||..+++ .+..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 345556777543 46678877765433221111111111122356666777754 457788876542 222222
Q ss_pred cccCceeEEEEecCCCEEEEEeCCC---cEEEEeCccC
Q 023772 100 GHESEVNAVKFNEYSSVVVSAGYDQ---SLRAWDCRSH 134 (277)
Q Consensus 100 ~h~~~v~~i~~~~~~~~l~s~~~d~---~i~iwd~~~~ 134 (277)
...... ....-++++.+.||.++ .+..||+++.
T Consensus 351 ~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 351 KPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence 111111 11223466777777553 4677887643
No 376
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.85 E-value=0.077 Score=48.65 Aligned_cols=142 Identities=14% Similarity=0.190 Sum_probs=93.1
Q ss_pred CCCEEEE-EeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCC--ceeEE-e
Q 023772 29 DGNYCLS-CGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTA-----DNSKLISCGGDRQIFYWDVSTG--RVIRK-F 98 (277)
Q Consensus 29 ~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~-----~~~~l~t~s~d~~v~~wd~~~~--~~~~~-~ 98 (277)
+.++|+. ......|.--|++.|+.+..++.|... |..++=.. .+..-+.|-.+..+..||..-. +++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 3445443 345677888899999999999887644 54443221 1234556778889999998743 33321 1
Q ss_pred e--cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEc
Q 023772 99 R--GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDI 173 (277)
Q Consensus 99 ~--~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~ 173 (277)
. ......++++-..+| .||.|+.+|.||+||-. +. .....+.+...+|..+..+.+. .+.++.+..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~-~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GK-RAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-ch-hhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 1 234456666666665 77889999999999943 21 2333455667889888887655 556677788888775
No 377
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.77 E-value=0.13 Score=46.02 Aligned_cols=186 Identities=14% Similarity=0.165 Sum_probs=91.5
Q ss_pred CCCEEEEEeCC------CcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCc--ee
Q 023772 29 DGNYCLSCGKD------RTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDR-----QIFYWDVSTGR--VI 95 (277)
Q Consensus 29 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~-----~v~~wd~~~~~--~~ 95 (277)
++...++||.| .++-.||..+++....-.-.......-...-+|...+.||.|| ++-.||.++.+ .+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 34677788888 4566788877664432211111111112223667778888886 46677766543 22
Q ss_pred EEeecccCceeEEEE-ecCCCEEEEEeCCC------cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCc-
Q 023772 96 RKFRGHESEVNAVKF-NEYSSVVVSAGYDQ------SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGT- 167 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~-~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~- 167 (277)
.... .+...... .-++.+.+.||.|+ ++..||+.+..-.....+............+....+.|+.|+.
T Consensus 412 a~m~---~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 412 APML---TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS 488 (571)
T ss_pred CCCC---cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC
Confidence 2111 12222222 23466777777554 4567777654322111111111122233344555677777763
Q ss_pred ----EEEEEccCCccccc-CCCCCeeEE-EEeCCCCEEEEEecCCe-----EEEEECCCCc
Q 023772 168 ----VRTFDIRVGRELSD-DLGQPVNCI-SMSNDGNCILASCLDST-----LRLLDRSTGE 217 (277)
Q Consensus 168 ----i~i~d~~~~~~~~~-~~~~~v~~~-~~s~~~~~l~~~~~d~~-----i~~wd~~~~~ 217 (277)
+..||.++.+=... ....+.... ...-++..++.|+.|+. +..||..+.+
T Consensus 489 ~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 66788776542111 111111111 11225666778877763 4456655544
No 378
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.73 E-value=0.33 Score=41.95 Aligned_cols=221 Identities=11% Similarity=0.103 Sum_probs=100.0
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV 94 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~ 94 (277)
....-....+.++|+|+.++.++ ||.-.|+.....+... .+......|.+. +.++.-...++|+++.--..+.
T Consensus 29 g~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~-----~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 29 GSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA-----FGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp EE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE-----EEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T
T ss_pred CCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc-----cCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc
Confidence 34555578899999999988855 6788888754433222 245567888884 4566666688899973222222
Q ss_pred eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC--eEEEeecCCcEEEEE
Q 023772 95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT--EIIGGSVDGTVRTFD 172 (277)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~d~~i~i~d 172 (277)
..++.. ...+..+-. |.+|+..+.+ .|.+||..+... +..+.- .++..+.|+++ .++.. .+..+.+++
T Consensus 102 ~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~--i~~i~v--~~vk~V~Ws~~g~~val~-t~~~i~il~ 171 (443)
T PF04053_consen 102 VKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKL--IRRIDV--SAVKYVIWSDDGELVALV-TKDSIYILK 171 (443)
T ss_dssp T------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--E--EEEESS---E-EEEEE-TTSSEEEEE--S-SEEEEE
T ss_pred ceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcce--eeEEec--CCCcEEEEECCCCEEEEE-eCCeEEEEE
Confidence 223321 112333322 7777766554 899999876432 222222 12566777754 34444 455677755
Q ss_pred ccCC---------c--cccc-CC-CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772 173 IRVG---------R--ELSD-DL-GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS 239 (277)
Q Consensus 173 ~~~~---------~--~~~~-~~-~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (277)
.... - .+.. .. ...|.+..|..+ .++-.... .|+.+--.....+..+. ...+.+ -..++
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl~~Ge~~~i~~ld---~~~yll--gy~~~ 243 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYLVNGETGIIAHLD---KPLYLL--GYLPK 243 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEEETTEEEEEEE-S---S--EEE--EEETT
T ss_pred ecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEEEcCCcceEEEcC---CceEEE--EEEcc
Confidence 4322 0 1111 11 456777788755 33333333 56553222222222221 122222 23344
Q ss_pred CceEEeecCCCeEEEEECcCc
Q 023772 240 DAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 240 ~~~l~sgs~d~~i~iwd~~~~ 260 (277)
.+.+.....|+.|..+.++..
T Consensus 244 ~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 244 ENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp TTEEEEE-TT--EEEEE--HH
T ss_pred CCEEEEEECCCCEEEEEECHH
Confidence 456666667777777766543
No 379
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.12 Score=41.08 Aligned_cols=101 Identities=21% Similarity=0.406 Sum_probs=65.5
Q ss_pred EEEeCCCCEEEEEeCC-----CcEEEEcCCCC-eeEEEEeccCccEEEEEEcCCCCEEEEEeC------C----------
Q 023772 24 ARFNGDGNYCLSCGKD-----RTIRLWNPHRG-IHIKTYKSHGREVRDVHVTADNSKLISCGG------D---------- 81 (277)
Q Consensus 24 ~~~~~~~~~l~s~s~d-----~~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~------d---------- 81 (277)
=.|++||.+|...=+| |.|-|||...+ ..+..+..|.-....+.+.+|++.++.+.. |
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 3589999999876444 78999997753 346678888888899999999998887642 1
Q ss_pred --CcEEEEECCCCceeEE--ee--cccCceeEEEEecCCCEEEEEeCCC
Q 023772 82 --RQIFYWDVSTGRVIRK--FR--GHESEVNAVKFNEYSSVVVSAGYDQ 124 (277)
Q Consensus 82 --~~v~~wd~~~~~~~~~--~~--~h~~~v~~i~~~~~~~~l~s~~~d~ 124 (277)
-++-+.|..+|+++.+ +. .+.-.|.-++..+++...+-+-..|
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G 247 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG 247 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC
Confidence 1233444445544432 22 2334566666667776666554433
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.67 E-value=0.23 Score=39.33 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=70.3
Q ss_pred EEEEEEeCCCCEEEEEeCCC--cEEEEcCCCCeeEEEEeccC-ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772 21 VLAARFNGDGNYCLSCGKDR--TIRLWNPHRGIHIKTYKSHG-REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK 97 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~ 97 (277)
.-.+.|.++|.++-|.|.-| .|+.+|+.+++......-.. .--..+... +++...-.-.++...+||.++-+.+.+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44688877888888887766 78899999998766544322 112233333 233344455688999999999988888
Q ss_pred eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 98 FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 98 ~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
+.- ..+=+.++ .+++.|+.......+..+|+.+..
T Consensus 126 ~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 126 FPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred Eec-CCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 763 34557777 445566665666678888876543
No 381
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.33 Score=41.76 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=99.0
Q ss_pred CeeEEEEeccCccEEEEEEcCCCCEEEEEe--CC--CcEEEEECCCCcee--EEeecccCceeEEEEecCCCEEEE-EeC
Q 023772 50 GIHIKTYKSHGREVRDVHVTADNSKLISCG--GD--RQIFYWDVSTGRVI--RKFRGHESEVNAVKFNEYSSVVVS-AGY 122 (277)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--~d--~~v~~wd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s-~~~ 122 (277)
+.....+..-...+..-+|+|+++.++-.+ .. ..+.++|+++++.. .++.++. ..-+|+||++.++- ...
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECC
Confidence 333444444445677778889888765442 22 35899999987643 3344433 34679999886554 455
Q ss_pred CCcEEEE--eCccCCCcceEeeccccCcEEEEEecCCeEE-EeecCCc--EEEEEccCCcc--cccCCCCCeeEEEEeCC
Q 023772 123 DQSLRAW--DCRSHSTEPIQIIDSFQDSVMSVCLTKTEII-GGSVDGT--VRTFDIRVGRE--LSDDLGQPVNCISMSND 195 (277)
Q Consensus 123 d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~d~~--i~i~d~~~~~~--~~~~~~~~v~~~~~s~~ 195 (277)
||...+| |+...+...+....... .-.++.+++..++ +....|. |.++|...... +....... ..-.++|+
T Consensus 259 dg~~~iy~~dl~~~~~~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~-~~p~~Spd 336 (425)
T COG0823 259 DGSPDIYLMDLDGKNLPRLTNGFGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN-SNPVWSPD 336 (425)
T ss_pred CCCccEEEEcCCCCcceecccCCccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC-cCccCCCC
Confidence 6665555 55543322211111111 1233444555544 4444455 44455554432 11112222 25678999
Q ss_pred CCEEEEEec-CCe--EEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 196 GNCILASCL-DST--LRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 196 ~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
|++|+..+. +|. |.+.|+.++.-++.+.... ......+.++++.++.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMF 386 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEE
Confidence 999877664 343 6667776655444444321 1122345666666553
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.61 E-value=0.0089 Score=33.70 Aligned_cols=30 Identities=7% Similarity=0.016 Sum_probs=27.8
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNP 47 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~ 47 (277)
...|.++.|+|..++||.+..||.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 356999999999999999999999999987
No 383
>PHA02790 Kelch-like protein; Provisional
Probab=96.48 E-value=0.46 Score=41.72 Aligned_cols=184 Identities=8% Similarity=-0.035 Sum_probs=84.3
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCce--eEEeecccCceeEEEEecCCCEEEEEeCC--CcEEEEeCccCCCcceEe
Q 023772 71 DNSKLISCGGDR-----QIFYWDVSTGRV--IRKFRGHESEVNAVKFNEYSSVVVSAGYD--QSLRAWDCRSHSTEPIQI 141 (277)
Q Consensus 71 ~~~~l~t~s~d~-----~v~~wd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~ 141 (277)
++..++.||.++ ++..||..+++- +..+........ + ..-++.+.+.||.+ .++..||.....-.....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-G-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-E-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455567777543 466788776532 222221111111 1 22356677777754 357788865432111111
Q ss_pred eccccCcEEEEEecCCeEEEeecCC---cEEEEEccCCccccc--CCCCCe-eEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 142 IDSFQDSVMSVCLTKTEIIGGSVDG---TVRTFDIRVGRELSD--DLGQPV-NCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~g~~d~---~i~i~d~~~~~~~~~--~~~~~v-~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
+.........+...+.-.+.||.++ .+..||.++.+ +.. ....+. ...+..-+|..++.|+ ....||.++
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCC
Confidence 1111111223334455456666543 46678876542 111 111111 1111223566666663 567899887
Q ss_pred CceEEEEeccccceeeeeeEecCCCceEEeecCC-----CeEEEEECcCccc
Q 023772 216 GELLQEYKGHICKSFKTDCCLTNSDAHVTGGSED-----GYIYFWDLVDASV 262 (277)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d-----~~i~iwd~~~~~~ 262 (277)
++-.. ............++ .-+++..+.|+.+ ..+..||..+.+.
T Consensus 425 ~~W~~-~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 425 NTWTL-IDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CcEeE-cCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 65432 22111111111122 2345555555533 4577888877653
No 384
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.28 E-value=0.56 Score=39.32 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=46.5
Q ss_pred EEeCCCCEEE-EEeCCCcEEEE--cCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecc
Q 023772 25 RFNGDGNYCL-SCGKDRTIRLW--NPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGH 101 (277)
Q Consensus 25 ~~~~~~~~l~-s~s~d~~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h 101 (277)
+|.++|+.|+ ++..|+.-.+| |+.+++..+--.+.........++++++.++-......++-.|+++.+...-+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 3567886666 45556666555 77887654433332233335667788888766666678999999988765444444
Q ss_pred cCceeEEEE--ecCCCEE
Q 023772 102 ESEVNAVKF--NEYSSVV 117 (277)
Q Consensus 102 ~~~v~~i~~--~~~~~~l 117 (277)
...+-...+ +.++..+
T Consensus 122 ~~~~g~gt~v~n~d~t~~ 139 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKL 139 (386)
T ss_dssp TTEEEEEEEEE-TTSSEE
T ss_pred cccccccceeeCCCccEE
Confidence 444433444 3344444
No 385
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.04 E-value=0.42 Score=42.98 Aligned_cols=106 Identities=8% Similarity=0.137 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCEEEEEeCC-CcEEEEc-----------CCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEE--
Q 023772 21 VLAARFNGDGNYCLSCGKD-RTIRLWN-----------PHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFY-- 86 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d-~~v~iwd-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~-- 86 (277)
...-.|+|+|+.+++.+.. ..+++.+ +..+.... ...+.|.++.|+|+|.+|+-.. +++|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAV 474 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEE
Confidence 5677899999988887543 2333333 22222111 2246799999999999887655 577776
Q ss_pred -EECCCCce-e---EEeec-ccCceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772 87 -WDVSTGRV-I---RKFRG-HESEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 87 -wd~~~~~~-~---~~~~~-h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~ 131 (277)
-....|+. + +.+.. -...+.++.|..++.++ .+..++...+|.+
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 44344541 1 11222 22335778999888865 4444444445544
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.93 E-value=1.2 Score=40.12 Aligned_cols=105 Identities=11% Similarity=0.077 Sum_probs=63.4
Q ss_pred CcEEEEEEeCCCCEEEEEe------CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC-----------
Q 023772 19 GAVLAARFNGDGNYCLSCG------KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD----------- 81 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d----------- 81 (277)
..+...+++++|+.++..- .|..-.+|-...+.....+-. ....+.-.|+|+++.|.+.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 3567888999999887554 354445553222221122221 1237778899998877766432
Q ss_pred -CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEE
Q 023772 82 -RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRA 128 (277)
Q Consensus 82 -~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~i 128 (277)
+.+.+.+++.++... .....|..+.|+|||..++... ++.|.+
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 233333554444332 2356799999999999887755 466655
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.89 E-value=0.76 Score=37.50 Aligned_cols=108 Identities=13% Similarity=0.246 Sum_probs=59.3
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcee-
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWD-VSTGRVI- 95 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd-~~~~~~~- 95 (277)
.+.+..+.-+++|++++.++...-++-||.-...-...-+.-+..|.++.|.|++...+.+ ..+.++.=+ ....+.-
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 4667888889999999888776677789854332222333346789999999998776654 788888776 2221111
Q ss_pred ---EEeecccCceeEEEEecCCCEEEEEeCCCcEE
Q 023772 96 ---RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLR 127 (277)
Q Consensus 96 ---~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~ 127 (277)
.......-.+..+++.++.+..+.|+. |.+.
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~ 256 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLL 256 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEEST-T-EE
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCC-ccEE
Confidence 111112234678899988877776554 4443
No 388
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.79 E-value=0.78 Score=36.83 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=109.6
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEE--------------EeccCccEEEEE--EcCCCCEEEEEeCCC
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKT--------------YKSHGREVRDVH--VTADNSKLISCGGDR 82 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~--------------~~~h~~~v~~~~--~~~~~~~l~t~s~d~ 82 (277)
.+|..+...++-+.++.-+ |+.+.++++..-..... -......+...+ -...+...+.....+
T Consensus 36 ~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk 114 (275)
T PF00780_consen 36 SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKK 114 (275)
T ss_pred ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECC
Confidence 3488899999887777654 59999999764322220 111223444444 223444555566667
Q ss_pred cEEEEECCCC-----ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc----------ccC
Q 023772 83 QIFYWDVSTG-----RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS----------FQD 147 (277)
Q Consensus 83 ~v~~wd~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----------~~~ 147 (277)
+|.+|..... +..+.+. -...+.++.|. ++.++.|..++ ..+.|+.+.....+..... ...
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSK 190 (275)
T ss_pred EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCC
Confidence 8988887653 3444444 34677788888 45666665544 7778887554433321111 112
Q ss_pred cEEEEEecCCeEEEeecCCcEEEEEccCCcccc---cCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELS---DDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
+...+....++++.+. |..-.+.|. .|+... ......+..+++. ..||++-+. +.|.+|++.++++++.+..
T Consensus 191 ~~~~~~~~~~e~Ll~~-~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 191 PLGIFQLSDNEFLLCY-DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred ceEEEEeCCceEEEEe-cceEEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 2333344434443332 322223333 222111 1123345556654 346666554 5699999999999998875
Q ss_pred c
Q 023772 225 H 225 (277)
Q Consensus 225 ~ 225 (277)
.
T Consensus 266 ~ 266 (275)
T PF00780_consen 266 P 266 (275)
T ss_pred C
Confidence 4
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.5 Score=40.86 Aligned_cols=142 Identities=15% Similarity=0.197 Sum_probs=89.0
Q ss_pred CCCEEE-EEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCE-------EEEEeCCCcEEEEECCCC-c-eeEEe
Q 023772 29 DGNYCL-SCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSK-------LISCGGDRQIFYWDVSTG-R-VIRKF 98 (277)
Q Consensus 29 ~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------l~t~s~d~~v~~wd~~~~-~-~~~~~ 98 (277)
+.++|+ ++.+-..+.--|++.|+.+...+-|.. |+-+.+.|+.+. =+.|-.|..|.=||+.-. . .+.--
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 566666777778999999999887765 777888776532 233567888999998632 2 12111
Q ss_pred ecc----cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe-EEEeecCCcEEEEEc
Q 023772 99 RGH----ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE-IIGGSVDGTVRTFDI 173 (277)
Q Consensus 99 ~~h----~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~d~~i~i~d~ 173 (277)
+.| .....|.+-..+| +++.||.+|.|++||- ... .....+.+...+|..+..+.+. .+.|+.+.++.+-+.
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~-~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGR-RAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhh-hhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 222 2233444444444 7888999999999995 222 1223345566777777665443 555667777777665
Q ss_pred c
Q 023772 174 R 174 (277)
Q Consensus 174 ~ 174 (277)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 3
No 390
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.52 E-value=0.5 Score=40.81 Aligned_cols=138 Identities=22% Similarity=0.359 Sum_probs=88.8
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCC-------CEEEEEeCCCcEEEEeCccCCCcceEee
Q 023772 71 DNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYS-------SVVVSAGYDQSLRAWDCRSHSTEPIQII 142 (277)
Q Consensus 71 ~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~-------~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 142 (277)
+...|+ .|+....+.-.|++.|+++..+.-|..- -+.|.|.. ..-+.|-.|..|.--|++... ..+...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-NKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-NKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC-Cceeee
Confidence 444444 5666678888899999999999887765 36787753 223446667777777877543 122111
Q ss_pred ccccCcEEEE------EecCCeEEEeecCCcEEEEEccCC--cccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEEC
Q 023772 143 DSFQDSVMSV------CLTKTEIIGGSVDGTVRTFDIRVG--RELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDR 213 (277)
Q Consensus 143 ~~~~~~~~~~------~~~~~~~~~g~~d~~i~i~d~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~ 213 (277)
. ..+.+... .....+++.++..|.|++||--.. +......++.|..+..+.+|.++++.+.. .|-+-|+
T Consensus 555 e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 555 E-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred e-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 1 11111111 122346899999999999994221 12223457889999999999999888754 6777775
No 391
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.52 E-value=1.3 Score=37.28 Aligned_cols=237 Identities=15% Similarity=0.118 Sum_probs=111.5
Q ss_pred ccccccceeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEE-EEecc----------------CccEEEEEE
Q 023772 6 LPRTEANVLKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIK-TYKSH----------------GREVRDVHV 68 (277)
Q Consensus 6 ~~~~~~~~l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h----------------~~~v~~~~~ 68 (277)
+.......+......+....|+|+|+.++-.. ++.|.+++..++...+ +..+- -+.-..+.|
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W 108 (353)
T PF00930_consen 30 IETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW 108 (353)
T ss_dssp TTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE
T ss_pred cCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE
Confidence 33333333333356788899999999988765 5899999987764432 12110 122357889
Q ss_pred cCCCCEEEEEeCC-CcEE-----------------------------------EEECCCCceeE-Ee----ecccCceeE
Q 023772 69 TADNSKLISCGGD-RQIF-----------------------------------YWDVSTGRVIR-KF----RGHESEVNA 107 (277)
Q Consensus 69 ~~~~~~l~t~s~d-~~v~-----------------------------------~wd~~~~~~~~-~~----~~h~~~v~~ 107 (277)
+|++++|+....| ..|+ ++|+++++... .. ..-...+..
T Consensus 109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence 9999998876533 2233 23333332210 00 011234556
Q ss_pred EEEecCCCEEEEE--eCC---CcEEEEeCccCCCcceEee--ccc---cCcEEEEEecCCe-EEEeecCCcEEE--EEcc
Q 023772 108 VKFNEYSSVVVSA--GYD---QSLRAWDCRSHSTEPIQII--DSF---QDSVMSVCLTKTE-IIGGSVDGTVRT--FDIR 174 (277)
Q Consensus 108 i~~~~~~~~l~s~--~~d---~~i~iwd~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~-~~~g~~d~~i~i--~d~~ 174 (277)
+.|.++++.++.. +.+ ..+.++|..+.....+..- ... ......+...+.. +.....+|.-.+ ++..
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~ 268 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD 268 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc
Confidence 6676666622222 222 2244444433222111110 001 0111111122333 333446665444 4544
Q ss_pred CCcccc-cCCCCCee-EEEEeCCCCEE-EEEec----CCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEe
Q 023772 175 VGRELS-DDLGQPVN-CISMSNDGNCI-LASCL----DSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTG 245 (277)
Q Consensus 175 ~~~~~~-~~~~~~v~-~~~~s~~~~~l-~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (277)
.+.... +...-.|. .+.++++++.+ +++.. ...++..++..+...+.++...... ....+||++++++-
T Consensus 269 ~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 269 GGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGKYYVD 344 (353)
T ss_dssp SSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSSEEEE
T ss_pred ccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCCEEEE
Confidence 443221 12223564 46788887654 45544 3356666676233445555432222 35678999988764
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.51 E-value=0.39 Score=37.15 Aligned_cols=101 Identities=9% Similarity=0.129 Sum_probs=70.0
Q ss_pred EEEEEeCCCCEEE-EEeCCCcEEEEc--CCCCee-----EEEEec----cCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 22 LAARFNGDGNYCL-SCGKDRTIRLWN--PHRGIH-----IKTYKS----HGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 22 ~~~~~~~~~~~l~-s~s~d~~v~iwd--~~~~~~-----~~~~~~----h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
+.++|+.+.+.+. .-+.+.+|.-|| ..+|.. +..++. .....-.+++..+|+..++.-.-++|...|.
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4577887665444 568888898887 555532 222221 1122345666778899999999999999999
Q ss_pred CCCceeEEeecccCceeEEEEecC--CCEEEEEeC
Q 023772 90 STGRVIRKFRGHESEVNAVKFNEY--SSVVVSAGY 122 (277)
Q Consensus 90 ~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~~~ 122 (277)
.+|+.+.++.--+..|++++|--. ..+.+|+..
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAA 275 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEehh
Confidence 999999999888899999999643 334444443
No 393
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.41 E-value=1.2 Score=36.48 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=48.9
Q ss_pred CeeEEEEeCCCCEEEEEe-cCCeEEEEECCC--Cc---eE-EEEeccccceeeeeeEecCCCceEEeecCCC-eEEEEEC
Q 023772 186 PVNCISMSNDGNCILASC-LDSTLRLLDRST--GE---LL-QEYKGHICKSFKTDCCLTNSDAHVTGGSEDG-YIYFWDL 257 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~~-~d~~i~~wd~~~--~~---~~-~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-~i~iwd~ 257 (277)
..+.++||||++.|..+- ..+.|+-|++.. +. .. ..+... .....--++.-.+|.+-+++-.+| .|..|+.
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 467899999997776654 457788887652 11 11 111111 111122233445566554444443 8999999
Q ss_pred cCccceeeeccCc
Q 023772 258 VDASVVAKFKAHS 270 (277)
Q Consensus 258 ~~~~~~~~~~~h~ 270 (277)
. |+++.+++-+.
T Consensus 243 d-G~l~~~i~lP~ 254 (307)
T COG3386 243 D-GKLLGEIKLPV 254 (307)
T ss_pred C-CcEEEEEECCC
Confidence 8 99988887663
No 394
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.34 E-value=0.99 Score=35.02 Aligned_cols=177 Identities=18% Similarity=0.289 Sum_probs=93.2
Q ss_pred CEEEEEeCCCcEEEEcC--CCCeeEEEEec-----cCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-
Q 023772 31 NYCLSCGKDRTIRLWNP--HRGIHIKTYKS-----HGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE- 102 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~--~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~- 102 (277)
.+.+.+|.--.+--||- +.....+++-. .....+.-.++|+|++++-.=.|-. ..+....+++..-+.+|.
T Consensus 72 ~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~-~~le~~~g~Ly~~~~~h~v 150 (310)
T KOG4499|consen 72 EFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFG-DDLEPIGGELYSWLAGHQV 150 (310)
T ss_pred eEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeecccc-ccccccccEEEEeccCCCc
Confidence 46667777667777883 33344444221 1234567778899988543222211 111111222222222222
Q ss_pred -------CceeEEEEecCCCE-EEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEcc
Q 023772 103 -------SEVNAVKFNEYSSV-VVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIR 174 (277)
Q Consensus 103 -------~~v~~i~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~ 174 (277)
.--+.++|..+.+. -.+-+.+-+|.-||-... +|...+.=.+||++
T Consensus 151 ~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~--------------------------tG~~snr~~i~dlr 204 (310)
T KOG4499|consen 151 ELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCP--------------------------TGDLSNRKVIFDLR 204 (310)
T ss_pred eeeehhccCCccccccccCcEEEEEccCceEEeeeecCCC--------------------------cccccCcceeEEec
Confidence 11234445444332 233344444444442111 11122333467777
Q ss_pred CCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeeeEecCC
Q 023772 175 VGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNS 239 (277)
Q Consensus 175 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (277)
..+..... ..-.++++.+|+..++.-..+++.-+|..+|+.+.++.--. ..+++|||.-.
T Consensus 205 k~~~~e~~---~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qitsccFgGk 264 (310)
T KOG4499|consen 205 KSQPFESL---EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQITSCCFGGK 264 (310)
T ss_pred cCCCcCCC---CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceEEEEecCC
Confidence 65432222 12335667789988998899999999999999999887553 34577788643
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.30 E-value=0.83 Score=41.08 Aligned_cols=106 Identities=16% Similarity=0.306 Sum_probs=72.9
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEcCCCCeeE--EEEeccCccEEEEEEc--CCCCEEEEEeCCCcEEEEECC-----C--
Q 023772 23 AARFNGDGNYCLSCGKDRTIRLWNPHRGIHI--KTYKSHGREVRDVHVT--ADNSKLISCGGDRQIFYWDVS-----T-- 91 (277)
Q Consensus 23 ~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~h~~~v~~~~~~--~~~~~l~t~s~d~~v~~wd~~-----~-- 91 (277)
-+.-+.-++..+.-+....+.|||...+... ..| ...+.|.+++|. |+++.+++.|..+.|.++.-. .
T Consensus 34 li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~ 112 (631)
T PF12234_consen 34 LISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKG 112 (631)
T ss_pred eEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCC
Confidence 3444445555555566678999999877532 223 346789999986 688999999999999998531 1
Q ss_pred --CceeEE--eeccc-CceeEEEEecCCCEEEEEeCCCcEEEEeC
Q 023772 92 --GRVIRK--FRGHE-SEVNAVKFNEYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 92 --~~~~~~--~~~h~-~~v~~i~~~~~~~~l~s~~~d~~i~iwd~ 131 (277)
..+++. +..|+ .+|.+..|.++|.+++.++ ..+.++|-
T Consensus 113 p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 113 PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 122333 33454 6889999999998877543 56888874
No 396
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.06 E-value=1.8 Score=36.42 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=106.6
Q ss_pred CccccccceeeccCCc-EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEc--CCCCEEEEEe--
Q 023772 5 DLPRTEANVLKGHEGA-VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVT--ADNSKLISCG-- 79 (277)
Q Consensus 5 ~~~~~~~~~l~~H~~~-V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s-- 79 (277)
++...+...|..+.+. ......+++.+.++-...+..|+--|+.+.+....+.....-+-...|. .++.+++..-
T Consensus 66 DL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~ 145 (386)
T PF14583_consen 66 DLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEIS 145 (386)
T ss_dssp ETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEE
T ss_pred EcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEe
Confidence 3444455555544322 3345667888888766667789999999988777777666666555553 3455544321
Q ss_pred -C-------------------CCcEEEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEe---CCC-cEEEEeCccC
Q 023772 80 -G-------------------DRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAG---YDQ-SLRAWDCRSH 134 (277)
Q Consensus 80 -~-------------------d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~---~d~-~i~iwd~~~~ 134 (277)
. ...|.--|+.+|+....+. -+..+.-+.|+|... +|+-|- .|. .-+||-++..
T Consensus 146 ~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d 224 (386)
T PF14583_consen 146 REDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD 224 (386)
T ss_dssp GGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT
T ss_pred ehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC
Confidence 1 1244555666666433332 345556677877644 444443 233 1366765532
Q ss_pred CCcceEeeccccCc-E---EEEEecCCeEE-----EeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecC
Q 023772 135 STEPIQIIDSFQDS-V---MSVCLTKTEII-----GGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLD 205 (277)
Q Consensus 135 ~~~~~~~~~~~~~~-~---~~~~~~~~~~~-----~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 205 (277)
... ...+..+... + -.+..++..+. -++.+..|.-+|+.+++...............+++|++++-=+.|
T Consensus 225 g~~-~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 225 GSN-VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred CCc-ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCC
Confidence 211 1111111111 0 01111222111 122233455556655432211111123345557888854332222
Q ss_pred ----------------CeEEEEECCCCceEEEEeccc---------cceeeeeeEecCCCceEE-eecCCCeEEEEEC
Q 023772 206 ----------------STLRLLDRSTGELLQEYKGHI---------CKSFKTDCCLTNSDAHVT-GGSEDGYIYFWDL 257 (277)
Q Consensus 206 ----------------~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-sgs~d~~i~iwd~ 257 (277)
-.|+++++..+.... +..|. ....-....|+||+++|+ ++...|...||=+
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp -----------------EEEEEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred CCccccccccceecCCcEEEEeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 256778887765432 11121 011234567999999865 5566777666644
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.01 E-value=1.5 Score=35.16 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=46.1
Q ss_pred EEcCCCCEEEEEeCC-----CcEEEEECCCC-ceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEE
Q 023772 67 HVTADNSKLISCGGD-----RQIFYWDVSTG-RVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAW 129 (277)
Q Consensus 67 ~~~~~~~~l~t~s~d-----~~v~~wd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iw 129 (277)
.|++++.+|+..-.| |.|-+||...+ +.+..+..|.-.-..+.+.+|++.++.+. |-|..-
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIeth 186 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETH 186 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--Cceecc
Confidence 488999999877554 67899998754 45677888877778899999999988653 445544
No 398
>PRK10115 protease 2; Provisional
Probab=94.89 E-value=3.1 Score=38.39 Aligned_cols=236 Identities=11% Similarity=0.029 Sum_probs=112.5
Q ss_pred cEEEEEEeCCCCEEEEE-----eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCC------CcEEEEE
Q 023772 20 AVLAARFNGDGNYCLSC-----GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGD------RQIFYWD 88 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~-----s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d------~~v~~wd 88 (277)
.+....++|||++|+-+ ++...|++-|+.+|..+...-... -..+.|.++++.|+-...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 36678899999988743 333567888888876332221111 1568999998866554432 3688888
Q ss_pred CCCC--ceeEEeecccCcee-EEEEecCCCEEEEEe---CCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEe
Q 023772 89 VSTG--RVIRKFRGHESEVN-AVKFNEYSSVVVSAG---YDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGG 162 (277)
Q Consensus 89 ~~~~--~~~~~~~~h~~~v~-~i~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 162 (277)
+.++ +-..-+........ ....+.+++.++..+ .++.+.+++.....................+......+..-
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 8877 33223333222333 233344666544433 24568888853322222222222222222332222333222
Q ss_pred ec----CCcEEEEEccC-C--cccccC-CCCCeeEEEEeCCCCEEEEEecCCeEEE--EECCCCceEEEEe-ccccceee
Q 023772 163 SV----DGTVRTFDIRV-G--RELSDD-LGQPVNCISMSNDGNCILASCLDSTLRL--LDRSTGELLQEYK-GHICKSFK 231 (277)
Q Consensus 163 ~~----d~~i~i~d~~~-~--~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~~--wd~~~~~~~~~~~-~~~~~~~~ 231 (277)
+. ...|...++.. + +.+... ....+..+.+. .+..+++...++.-++ +|...+ .+..+. ... ...
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~--~~~ 361 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDP--AYV 361 (686)
T ss_pred EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCC--ceE
Confidence 22 11233334431 1 122222 22357777776 3344555566665554 454433 333332 111 111
Q ss_pred eeeEec--CCC-ceEEee---cCCCeEEEEECcCcc
Q 023772 232 TDCCLT--NSD-AHVTGG---SEDGYIYFWDLVDAS 261 (277)
Q Consensus 232 ~~~~~~--~~~-~~l~sg---s~d~~i~iwd~~~~~ 261 (277)
.....+ +++ .++++- ..-+.++.||..+++
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 111122 232 333322 346678888887764
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.82 E-value=2.9 Score=37.72 Aligned_cols=71 Identities=6% Similarity=0.181 Sum_probs=48.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee-cccCceeEEEEe--cCCCEEEEEeCCCcEEEEeC
Q 023772 61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR-GHESEVNAVKFN--EYSSVVVSAGYDQSLRAWDC 131 (277)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~-~h~~~v~~i~~~--~~~~~l~s~~~d~~i~iwd~ 131 (277)
....-+.-+.-++.-+.-+...++.+||...+....+-. .....|.+++|. |+++.+++.|..+.|.++-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 344445555544433344445679999998887543322 347789999985 78899999999999999964
No 400
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.66 E-value=1.9 Score=34.87 Aligned_cols=208 Identities=15% Similarity=0.165 Sum_probs=116.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCC------C-ceeEEeec-----ccCceeEEEEecCC------------CEE
Q 023772 62 EVRDVHVTADNSKLISCGGDRQIFYWDVST------G-RVIRKFRG-----HESEVNAVKFNEYS------------SVV 117 (277)
Q Consensus 62 ~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~------~-~~~~~~~~-----h~~~v~~i~~~~~~------------~~l 117 (277)
.-+.++++|.+..-++....+...+||... . .++-++.. .....+.+.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 357889999998888888888999999861 1 22223321 12345666666332 246
Q ss_pred EEEeCCCcEEEEeCccCCC---cceEeeccc-cCcEE-EEEec----CCeEE-EeecCCcEEEEEccCCcccc-----cC
Q 023772 118 VSAGYDQSLRAWDCRSHST---EPIQIIDSF-QDSVM-SVCLT----KTEII-GGSVDGTVRTFDIRVGRELS-----DD 182 (277)
Q Consensus 118 ~s~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~~~-~~~~~----~~~~~-~g~~d~~i~i~d~~~~~~~~-----~~ 182 (277)
+.+++||+|.-|....... .....+... ...++ -+.+. .+.|. +--..++|.+||-.-.+... ..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8889999999998643222 122223222 12221 12221 23333 33446788888754222110 00
Q ss_pred ---CC-CCeeEE--------EE---eCCCCEEEEEecCCeEEEEECCCCceEEEEecc--ccceeeeeeEe----cCCCc
Q 023772 183 ---LG-QPVNCI--------SM---SNDGNCILASCLDSTLRLLDRSTGELLQEYKGH--ICKSFKTDCCL----TNSDA 241 (277)
Q Consensus 183 ---~~-~~v~~~--------~~---s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~ 241 (277)
.+ .+.+-. .+ .++...=+.|..-|.|-+||.. +++++.+... .+..+.+..+. ...+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 111111 11 2222222334455788999985 7888877532 22222222211 23467
Q ss_pred eEEeecCCCeEEEEECcCccceeeeccCc
Q 023772 242 HVTGGSEDGYIYFWDLVDASVVAKFKAHS 270 (277)
Q Consensus 242 ~l~sgs~d~~i~iwd~~~~~~~~~~~~h~ 270 (277)
+|+.-.-||+|..+|..+++.+..++..+
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCC
Confidence 78887889999999999999999888643
No 401
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=94.65 E-value=2.6 Score=36.34 Aligned_cols=30 Identities=7% Similarity=0.172 Sum_probs=24.8
Q ss_pred CeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 186 PVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
.+..+...+..+.+.+...++.|++|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 488889998889999999999999999974
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.58 E-value=0.74 Score=35.73 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=53.2
Q ss_pred cEEEEEecCCeEEEeecCCcEEEEEccCCcccccC----------------CCCCeeEEEEeCCCCEEEEEecCCeEEEE
Q 023772 148 SVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDD----------------LGQPVNCISMSNDGNCILASCLDSTLRLL 211 (277)
Q Consensus 148 ~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~----------------~~~~v~~~~~s~~~~~l~~~~~d~~i~~w 211 (277)
++..+...++.+++-+.+|.+++||+.+++.+... ....|..+.++.+|.-+++- .+|..+.|
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y 92 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSY 92 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEe
Confidence 45566777888999999999999999887643221 23467888889888866654 46788999
Q ss_pred ECCCCceEE
Q 023772 212 DRSTGELLQ 220 (277)
Q Consensus 212 d~~~~~~~~ 220 (277)
|..-+.-+.
T Consensus 93 ~~~L~~W~~ 101 (219)
T PF07569_consen 93 SPDLGCWIR 101 (219)
T ss_pred ccccceeEE
Confidence 987765554
No 403
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.53 E-value=0.2 Score=27.46 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=24.9
Q ss_pred CeeEEEEeCCCC---EEEEEecCCeEEEEECCC
Q 023772 186 PVNCISMSNDGN---CILASCLDSTLRLLDRST 215 (277)
Q Consensus 186 ~v~~~~~s~~~~---~l~~~~~d~~i~~wd~~~ 215 (277)
.++++.|+|+.. +|+-+-.-+.+.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998544 777777888999999985
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=0.89 Score=43.07 Aligned_cols=151 Identities=10% Similarity=0.062 Sum_probs=88.8
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------ceeEEeecc-cCceeEEEEecCCCE--EEEEeCCC
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVSTG----------------RVIRKFRGH-ESEVNAVKFNEYSSV--VVSAGYDQ 124 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~----------------~~~~~~~~h-~~~v~~i~~~~~~~~--l~s~~~d~ 124 (277)
..++.++....++.++..+.+.++-..+- ..+.+++.| ..++..+...+|... ++..+.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 45666666667777777777777654321 011233333 345555666677543 44445556
Q ss_pred cEEEEeCccCCCcceEe---ecc----c--cCcEEEEEecC---CeEEEeecCCcEEEEEccCCcccc--cCCCCCeeEE
Q 023772 125 SLRAWDCRSHSTEPIQI---IDS----F--QDSVMSVCLTK---TEIIGGSVDGTVRTFDIRVGRELS--DDLGQPVNCI 190 (277)
Q Consensus 125 ~i~iwd~~~~~~~~~~~---~~~----~--~~~~~~~~~~~---~~~~~g~~d~~i~i~d~~~~~~~~--~~~~~~v~~~ 190 (277)
.|..||++......... +.. . ......+.+++ ...+....|+.|++..+....... .......+++
T Consensus 125 ~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav 204 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAV 204 (1405)
T ss_pred eEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeE
Confidence 78999987643222111 110 0 11112233333 235667788888887665332211 1344578999
Q ss_pred EEeCCCCEEEEEecCCeEEEEECC
Q 023772 191 SMSNDGNCILASCLDSTLRLLDRS 214 (277)
Q Consensus 191 ~~s~~~~~l~~~~~d~~i~~wd~~ 214 (277)
+|+|.|+.++.|-..|++.-|-..
T Consensus 205 ~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 205 LWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred EeccccceeeEecCCCeEEEeecc
Confidence 999999999999999999888764
No 405
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.91 E-value=0.59 Score=36.27 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=48.3
Q ss_pred EeCCCCEEEEEecCCeEEEEECCCCceEEEEe------cc------ccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 192 MSNDGNCILASCLDSTLRLLDRSTGELLQEYK------GH------ICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 192 ~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------~~------~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
+...+.++++-..+|.+++||+.+++.+..-. .. .....+..+.++.+|.-+++ -.+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEecccc
Confidence 44578899999999999999999887643220 00 11233455667777776665 4468899998776
Q ss_pred cccee
Q 023772 260 ASVVA 264 (277)
Q Consensus 260 ~~~~~ 264 (277)
+.-+.
T Consensus 97 ~~W~~ 101 (219)
T PF07569_consen 97 GCWIR 101 (219)
T ss_pred ceeEE
Confidence 54443
No 406
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.71 E-value=1.1 Score=38.37 Aligned_cols=86 Identities=14% Similarity=0.199 Sum_probs=60.0
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc-EEEEEEcCCC----------------C--E
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE-VRDVHVTADN----------------S--K 74 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~----------------~--~ 74 (277)
|.-....+.++..+|++++.+....-|.|.++|+.++..++.+++-... +.-+.....+ . +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 4455667899999999999999888899999999998877777653322 2211111111 1 1
Q ss_pred EEEEeCCCcEEEEECCCCceeEEee
Q 023772 75 LISCGGDRQIFYWDVSTGRVIRKFR 99 (277)
Q Consensus 75 l~t~s~d~~v~~wd~~~~~~~~~~~ 99 (277)
++-+-.-|.|-+|++.+|..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 2345667899999999888877665
No 407
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=3.2 Score=33.41 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=112.6
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee--EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH--IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..+.-|.....+-..++.+ ..+|...-... .+.+.+-...+.++.|+|+.+.|++......--+|=..+|++++++
T Consensus 46 f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti 123 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI 123 (316)
T ss_pred eeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence 4444444444444455555 45555332111 1112333456999999999999999888887777766778888876
Q ss_pred ecc-cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcc-----eEeeccc---cCcEEEEEecC--CeEEEeecCCc
Q 023772 99 RGH-ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEP-----IQIIDSF---QDSVMSVCLTK--TEIIGGSVDGT 167 (277)
Q Consensus 99 ~~h-~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~---~~~~~~~~~~~--~~~~~g~~d~~ 167 (277)
.-- -..-..|.+...++++++-=.++.+.++.+....... ...+... ....-.+++++ ..++.+=.-+-
T Consensus 124 PL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P 203 (316)
T COG3204 124 PLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP 203 (316)
T ss_pred cccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC
Confidence 421 1223457788888888887778888887665432110 0001111 11122233332 33555555556
Q ss_pred EEEEEccCCc-cccc----CC-------CCCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEe
Q 023772 168 VRTFDIRVGR-ELSD----DL-------GQPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 168 i~i~d~~~~~-~~~~----~~-------~~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
+.||...... .+.. .. -..+..+.|++ .+..|+.+.+++.+.-.|.. |..+..+.
T Consensus 204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~ls 271 (316)
T COG3204 204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLS 271 (316)
T ss_pred cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEE
Confidence 6666654332 1111 00 12466778886 45667777788888778875 55555544
No 408
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.48 E-value=0.53 Score=25.80 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=25.3
Q ss_pred ccEEEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 023772 61 REVRDVHVTADNS---KLISCGGDRQIFYWDVST 91 (277)
Q Consensus 61 ~~v~~~~~~~~~~---~l~t~s~d~~v~~wd~~~ 91 (277)
++|++++|+|++. +|+-+-..+.|.++|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4789999998554 777777789999999985
No 409
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.33 E-value=3.6 Score=33.17 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=89.4
Q ss_pred eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEecc-CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 023772 15 KGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSH-GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGR 93 (277)
Q Consensus 15 ~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~ 93 (277)
.|-...|.++.|+|+.+.|++........||=...|..++++.-. -+....+++..+|++.++--.++.+.++.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 454555999999999999999988899999988888888876431 2355678888888888887788899988887553
Q ss_pred eeEE----------eecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 94 VIRK----------FRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 94 ~~~~----------~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
.... ....+.....++|.+..+.++.+=.-.-+.||...
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 2211 11225677889999999888888777778888754
No 410
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.85 E-value=0.18 Score=46.27 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=106.5
Q ss_pred ceeeccCCcEEEEEEeCC-CCEEEEEeCCCcEEEEcCC--CCeeEEEE-----eccCccEEEEEE---cCCCCEEEEEeC
Q 023772 12 NVLKGHEGAVLAARFNGD-GNYCLSCGKDRTIRLWNPH--RGIHIKTY-----KSHGREVRDVHV---TADNSKLISCGG 80 (277)
Q Consensus 12 ~~l~~H~~~V~~~~~~~~-~~~l~s~s~d~~v~iwd~~--~~~~~~~~-----~~h~~~v~~~~~---~~~~~~l~t~s~ 80 (277)
..++|-.|.|..++|... -..+. -.-|.+.|||+. .|+....+ ..-..++.-+.| .++.-++..+-.
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 446788889999998642 22222 333788999854 33322222 222233333444 445566666777
Q ss_pred CCcEEEEECCCCceeEEeecccCceeEEE-----------EecCCCEEEEEeCCCcEEEEeCccCCC--cceE-eecc--
Q 023772 81 DRQIFYWDVSTGRVIRKFRGHESEVNAVK-----------FNEYSSVVVSAGYDQSLRAWDCRSHST--EPIQ-IIDS-- 144 (277)
Q Consensus 81 d~~v~~wd~~~~~~~~~~~~h~~~v~~i~-----------~~~~~~~l~s~~~d~~i~iwd~~~~~~--~~~~-~~~~-- 144 (277)
++.+++....+... .-+++|...+..++ .+|||+.++++..||.++.|.+.-... .+.. ....
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88888776654332 22445766665555 468899999999999999887642211 0110 1111
Q ss_pred -ccCcEEEEEecC---------Ce-EEEe-ecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCE------------EE
Q 023772 145 -FQDSVMSVCLTK---------TE-IIGG-SVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNC------------IL 200 (277)
Q Consensus 145 -~~~~~~~~~~~~---------~~-~~~g-~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~------------l~ 200 (277)
++..+.- +.+. .. ++++ -.++.+++|....-++......+-|+.+. -++|.. ++
T Consensus 283 ~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v 360 (1283)
T KOG1916|consen 283 KHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLV 360 (1283)
T ss_pred CCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEeec-CCCccccchhhhHHHHHHHH
Confidence 2222222 1111 11 3333 33466888887655555444444455544 223321 22
Q ss_pred EEecCCeEEEEECCC
Q 023772 201 ASCLDSTLRLLDRST 215 (277)
Q Consensus 201 ~~~~d~~i~~wd~~~ 215 (277)
..+.|+.|++|.-+.
T Consensus 361 ~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 361 SRSVDGTIKIWQNRK 375 (1283)
T ss_pred HhhhHHHHHHhhcch
Confidence 345678888886543
No 411
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.61 E-value=0.069 Score=48.79 Aligned_cols=113 Identities=17% Similarity=0.281 Sum_probs=70.1
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEE-----------EcCCCCEEEEEeCCCcEEEEEC
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVH-----------VTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
|.-+.|.++..++..+-.++++++-+..+... ..|..|+..+..++ ++|||+.++++..||.++.|..
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 44455566777877888889999877654322 34555766555443 6889999999999998888865
Q ss_pred C-CC----ceeEEeeccc-CceeEEEEecCC---------CEEE-EEeCCCcEEEEeCccC
Q 023772 90 S-TG----RVIRKFRGHE-SEVNAVKFNEYS---------SVVV-SAGYDQSLRAWDCRSH 134 (277)
Q Consensus 90 ~-~~----~~~~~~~~h~-~~v~~i~~~~~~---------~~l~-s~~~d~~i~iwd~~~~ 134 (277)
- +| .+...++.|. .+-.|.-++.+. .+++ +...+..+++|.....
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w 325 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW 325 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence 2 22 3455566665 232222243321 1334 4445677999986543
No 412
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.58 E-value=0.81 Score=40.94 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCceEEeecCCCeEEEEECcCccceeeec
Q 023772 239 SDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
+..++++-+.|+++|+||+.++.++....
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 67889999999999999999999976653
No 413
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.36 E-value=0.92 Score=40.61 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=28.8
Q ss_pred cEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 62 EVRDVHVTA----DNSKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 62 ~v~~~~~~~----~~~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
...++++.. +..++++.+.|+++|+||+++++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455666666 6789999999999999999999996654
No 414
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=11 Score=36.37 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=24.6
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCC
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPH 48 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~ 48 (277)
.-..++|++.-.+++-+...|.+++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34568899999999999999999999743
No 415
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.14 E-value=6.1 Score=32.88 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee---EEEE----eccCccEEEEEEcCC---CCEEEEEeCC---------
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH---IKTY----KSHGREVRDVHVTAD---NSKLISCGGD--------- 81 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~---~~~~----~~h~~~v~~~~~~~~---~~~l~t~s~d--------- 81 (277)
-+.++|.|||+++++ -..|.|++++ ..+.. +... .........++++|+ +.+|+.....
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 468999999988776 5589999999 44443 2222 123456789999984 3454443321
Q ss_pred CcEEEEECCCC-------c-eeEEeec---ccCceeEEEEecCCCEEEEEeCCCc
Q 023772 82 RQIFYWDVSTG-------R-VIRKFRG---HESEVNAVKFNEYSSVVVSAGYDQS 125 (277)
Q Consensus 82 ~~v~~wd~~~~-------~-~~~~~~~---h~~~v~~i~~~~~~~~l~s~~~d~~ 125 (277)
..|.-|....+ + ++..+.. ....-..|.|.|++.+.++.+..+.
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 24444444333 1 1222222 2234466999999988777765443
No 416
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.93 E-value=7.5 Score=33.45 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=79.2
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-----eeEEeecccCceeEEEEecC----CCEEEEEeCCCcEEEEeCccCCCc----
Q 023772 71 DNSKLISCGGDRQIFYWDVSTGR-----VIRKFRGHESEVNAVKFNEY----SSVVVSAGYDQSLRAWDCRSHSTE---- 137 (277)
Q Consensus 71 ~~~~l~t~s~d~~v~~wd~~~~~-----~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~d~~i~iwd~~~~~~~---- 137 (277)
+...|+.||.+|.+++++...+. ++-+. .-+.||-++...+. ....++.-.-+.+.+|.+......
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999986543 12111 23568888876542 333444466677888877432211
Q ss_pred ---ceEeeccc--cCcEEEEEec-------CCeEEEeecCCcEEEEEccCCcc-cccCCCCCeeEEEEeCCCCEEEEEec
Q 023772 138 ---PIQIIDSF--QDSVMSVCLT-------KTEIIGGSVDGTVRTFDIRVGRE-LSDDLGQPVNCISMSNDGNCILASCL 204 (277)
Q Consensus 138 ---~~~~~~~~--~~~~~~~~~~-------~~~~~~g~~d~~i~i~d~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 204 (277)
.......| +.....++.. ...+.+=+.||.+.+|+-+...- .....---.-.+++.+.-..|++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 11122222 2222222221 23466678999999998764321 00000111233567776667777777
Q ss_pred CCeEEEEE
Q 023772 205 DSTLRLLD 212 (277)
Q Consensus 205 d~~i~~wd 212 (277)
+..+..|.
T Consensus 195 s~~l~~Yk 202 (418)
T PF14727_consen 195 SWTLECYK 202 (418)
T ss_pred ceeEEEec
Confidence 77776665
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.84 E-value=11 Score=35.26 Aligned_cols=69 Identities=13% Similarity=0.178 Sum_probs=46.6
Q ss_pred CCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEE-------------EEEEcC--CCCEEEEEeC----------CCcE
Q 023772 30 GNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVR-------------DVHVTA--DNSKLISCGG----------DRQI 84 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~--~~~~l~t~s~----------d~~v 84 (277)
+..++.++.|+.+.-.|..+|+..-.|.. .+.|. ...-.| .+..++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45778888999999999999988876642 12221 000111 1345666642 6889
Q ss_pred EEEECCCCceeEEee
Q 023772 85 FYWDVSTGRVIRKFR 99 (277)
Q Consensus 85 ~~wd~~~~~~~~~~~ 99 (277)
+-+|+++|+++..+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999988775
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.71 E-value=11 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.5
Q ss_pred CCCeeEEEEeCC---CCEEEEEecCCeEEEEECCC
Q 023772 184 GQPVNCISMSND---GNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 184 ~~~v~~~~~s~~---~~~l~~~~~d~~i~~wd~~~ 215 (277)
...|..+.|+|. +..|+.=..|+++|+||+..
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 346778888885 47777778888899998854
No 419
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.59 E-value=6.5 Score=32.01 Aligned_cols=202 Identities=12% Similarity=0.137 Sum_probs=110.3
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCC-------CCeeEEEEec-----cCccEEEEEEcCCC------------CEEEE
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPH-------RGIHIKTYKS-----HGREVRDVHVTADN------------SKLIS 77 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~-------~~~~~~~~~~-----h~~~v~~~~~~~~~------------~~l~t 77 (277)
..++|+|.+.+-++...-+...+||.. ....+-++.. .....+.+.|+... ..++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 579999999988888888999999986 1122333331 12356667665332 23677
Q ss_pred EeCCCcEEEEECCCCce-----eEEeecc-cCce-eEEEEec--CCCEEEEE-eCCCcEEEEeCccCCCcceEeeccccC
Q 023772 78 CGGDRQIFYWDVSTGRV-----IRKFRGH-ESEV-NAVKFNE--YSSVVVSA-GYDQSLRAWDCRSHSTEPIQIIDSFQD 147 (277)
Q Consensus 78 ~s~d~~v~~wd~~~~~~-----~~~~~~h-~~~v-~~i~~~~--~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~ 147 (277)
++.||+|.-|...-+.. ...+... ...| ..+++.. .+.+|..+ -..++|.+||-.-.. ...-....+
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~---~~~~g~F~D 182 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP---PPLPGSFID 182 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc---ccCCCCccC
Confidence 88999999998532221 1112111 2333 3444442 23444443 457889999853211 100000000
Q ss_pred ----------cEEE------EEe---c--CCeEEEeecCCcEEEEEccCCcccccCCC---CCeeEEEEeC------CCC
Q 023772 148 ----------SVMS------VCL---T--KTEIIGGSVDGTVRTFDIRVGRELSDDLG---QPVNCISMSN------DGN 197 (277)
Q Consensus 148 ----------~~~~------~~~---~--~~~~~~g~~d~~i~i~d~~~~~~~~~~~~---~~v~~~~~s~------~~~ 197 (277)
.+.. +.. + .+.=+.|..-|.|.+||+.-....+...+ .....|+..| .|.
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0100 000 1 11122344457888888753321111111 2334455544 466
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEeccc
Q 023772 198 CILASCLDSTLRLLDRSTGELLQEYKGHI 226 (277)
Q Consensus 198 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~ 226 (277)
.|+---.||+|..||..+++.+..+....
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~ 291 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPD 291 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCC
Confidence 67777789999999999998877776543
No 420
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.27 E-value=14 Score=35.10 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=64.6
Q ss_pred EEecCCeEEEeecCCcEEEEEccCCc---ccccCCCCCeeEEEEeCCC------CEEEEEecCCeEEEEEC-CCCceEEE
Q 023772 152 VCLTKTEIIGGSVDGTVRTFDIRVGR---ELSDDLGQPVNCISMSNDG------NCILASCLDSTLRLLDR-STGELLQE 221 (277)
Q Consensus 152 ~~~~~~~~~~g~~d~~i~i~d~~~~~---~~~~~~~~~v~~~~~s~~~------~~l~~~~~d~~i~~wd~-~~~~~~~~ 221 (277)
+..+...++.++.++.+...++..+. .-.......|.|++++|.| .+++.|..+..+.+--. .....+..
T Consensus 495 ~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~ 574 (1096)
T KOG1897|consen 495 VSANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITH 574 (1096)
T ss_pred EeecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeee
Confidence 33344456666666666666665443 1122346789999999852 26788877766554333 22332222
Q ss_pred --EeccccceeeeeeEecCCCceEEeecCCCeEEEE--ECcCccc
Q 023772 222 --YKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFW--DLVDASV 262 (277)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iw--d~~~~~~ 262 (277)
..+...+..++..++..+..+|.++..||.+.-+ |..+|.+
T Consensus 575 ~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 575 EQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred eccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 2233333334445566667899999999998866 5555543
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=91.16 E-value=14 Score=35.03 Aligned_cols=248 Identities=12% Similarity=0.107 Sum_probs=117.3
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEc--CCCCeeE--EEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWN--PHRGIHI--KTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd--~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
.|.-..|-.|..+|+.+..||.+.-|. ..+|..- +...-...|+.--.|+..++.-+-+..|+=.-+|.- +++.+
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv 663 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLV 663 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEE
Confidence 455666777789999999999998875 4444321 111122446666666665544333444554555543 33333
Q ss_pred EEeecccCceeEEEEecC--CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecC-Ce-EE--------Ee-
Q 023772 96 RKFRGHESEVNAVKFNEY--SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTK-TE-II--------GG- 162 (277)
Q Consensus 96 ~~~~~h~~~v~~i~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~--------~g- 162 (277)
.+-..-+..-.-+.|+.+ ...++++. .+.+++..+..-+.-.+.+...+ .....++..+ .. +. .+
T Consensus 664 ~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 664 YSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred EeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchh
Confidence 221110100011122222 22444443 34466665543222222221111 1111122211 10 10 11
Q ss_pred --ecCC---cEEEEEccCCcccccCC------CCCeeEEEEeCC-CCEEEEEe----------cCCeEEEEECCCCceEE
Q 023772 163 --SVDG---TVRTFDIRVGRELSDDL------GQPVNCISMSND-GNCILASC----------LDSTLRLLDRSTGELLQ 220 (277)
Q Consensus 163 --~~d~---~i~i~d~~~~~~~~~~~------~~~v~~~~~s~~-~~~l~~~~----------~d~~i~~wd~~~~~~~~ 220 (277)
+... .++++|-.+.+.+.... ...+.+..|..| +.+++.|. ..|.|.+|.+...+.++
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~ 821 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLE 821 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCcee
Confidence 1122 36677776655443221 123555568777 77777774 25677777776633333
Q ss_pred EEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeeccCccee
Q 023772 221 EYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFKAHSLVV 273 (277)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~v 273 (277)
....+.-.....+.+ --+|+++|+ -...|++|++.+.+.++.-..|...+
T Consensus 822 ~v~e~~v~Gav~aL~-~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 822 LVAETVVKGAVYALV-EFNGKLLAG--INQSVRLYEWTTERELRIECNISNPI 871 (1096)
T ss_pred eeeeeeeccceeehh-hhCCeEEEe--cCcEEEEEEccccceehhhhcccCCe
Confidence 322221111122211 235777765 34589999999886555444444433
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.14 E-value=6.6 Score=31.31 Aligned_cols=170 Identities=14% Similarity=0.042 Sum_probs=87.5
Q ss_pred eeEEeecc-cCceeEEEEecCCCEEEEEeCCC--cEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEE-eecCCcEE
Q 023772 94 VIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQ--SLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIG-GSVDGTVR 169 (277)
Q Consensus 94 ~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~d~~i~ 169 (277)
++.++... ..-...+.|..++.++-+.+.-| .|+.+|+.++.......+... -.--.+..-++.+.- .=.++...
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEESSSSEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEecCCeEE
Confidence 45555422 33456788878888888888766 688888876543222222211 011122223344332 23457778
Q ss_pred EEEccCCccccc-CCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee---eeeEecCCCceEEe
Q 023772 170 TFDIRVGRELSD-DLGQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK---TDCCLTNSDAHVTG 245 (277)
Q Consensus 170 i~d~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s 245 (277)
+||..+-+.+.. .....=..++ .+++.|+.+.....|+.+|..+.+..+.+......... ...-+ -+|...|=
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyAN 190 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYAN 190 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEE
Confidence 899876554432 1223344555 45667777777778999999887776655432111100 00111 13443333
Q ss_pred ecCCCeEEEEECcCccceeeec
Q 023772 246 GSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 246 gs~d~~i~iwd~~~~~~~~~~~ 267 (277)
-=....|...|..+|+++..+.
T Consensus 191 VW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 191 VWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp ETTSSEEEEEETTT-BEEEEEE
T ss_pred eCCCCeEEEEeCCCCeEEEEEE
Confidence 3344567777888887776653
No 423
>PRK13684 Ycf48-like protein; Provisional
Probab=90.79 E-value=8.7 Score=32.04 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=59.0
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEE-EEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIR-LWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIR 96 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~-iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~ 96 (277)
.+.+..+.+.+++.+++.+.. |.+. .++-...........-...++++.+.++++.++.+ ..|.+.+=+.+.++.-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 356788888888877766554 4443 33322111222222334578899999988766654 56765432334443221
Q ss_pred Eeec----ccCceeEEEEecCCCEEEEEeCCCcEE
Q 023772 97 KFRG----HESEVNAVKFNEYSSVVVSAGYDQSLR 127 (277)
Q Consensus 97 ~~~~----h~~~v~~i~~~~~~~~l~s~~~d~~i~ 127 (277)
.... ....+.++.+.+++..++ ++.+|.+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~ 283 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL 283 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence 1111 123467788888766555 45667554
No 424
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.28 E-value=11 Score=32.36 Aligned_cols=202 Identities=14% Similarity=0.141 Sum_probs=97.8
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCC-----------c
Q 023772 62 EVRDVHVTADNSKLISC-GGD----RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQ-----------S 125 (277)
Q Consensus 62 ~v~~~~~~~~~~~l~t~-s~d----~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~-----------~ 125 (277)
.+....++|++++++-+ +.. ..++++|+++++.+...-... .-..+.|.++++.|+....|. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988743 333 459999999998765322111 112389999988776665443 3
Q ss_pred EEEEeCccCCCcceEeeccccCc--EEEEEec--CCeEEEe-ec--C-CcEEEEEccCC-------cccccCCCCCeeEE
Q 023772 126 LRAWDCRSHSTEPIQIIDSFQDS--VMSVCLT--KTEIIGG-SV--D-GTVRTFDIRVG-------RELSDDLGQPVNCI 190 (277)
Q Consensus 126 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~g-~~--d-~~i~i~d~~~~-------~~~~~~~~~~v~~~ 190 (277)
|+.|.+.+...+-..++...... ...+..+ +..++.. .. + ..+.+.|+... +.+..........+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 77777765544323444433322 3334333 3444332 22 2 34667777653 11111122222333
Q ss_pred EEeCCCCEEEEE---ecCCeEEEEECCCCce---EEEEeccccceeeeeeEecCCCceEEeecCCC--eEEEEECcCccc
Q 023772 191 SMSNDGNCILAS---CLDSTLRLLDRSTGEL---LQEYKGHICKSFKTDCCLTNSDAHVTGGSEDG--YIYFWDLVDASV 262 (277)
Q Consensus 191 ~~s~~~~~l~~~---~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~--~i~iwd~~~~~~ 262 (277)
... .+.+++.. ...+.|.-.++..... ...+..+........+.. ..+.+++.-..++ .|+++++..+..
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL-FKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE-ETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE-ECCEEEEEEEECCccEEEEEECCCCcE
Confidence 333 33333333 2345666667765432 223333322222232222 2344555554454 477889883333
Q ss_pred eeee
Q 023772 263 VAKF 266 (277)
Q Consensus 263 ~~~~ 266 (277)
...+
T Consensus 362 ~~~~ 365 (414)
T PF02897_consen 362 SREI 365 (414)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 3333
No 425
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=90.10 E-value=13 Score=33.10 Aligned_cols=150 Identities=13% Similarity=0.180 Sum_probs=80.3
Q ss_pred cCccEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEeecccCceeEEEEecC----CCEEEEEeCCCcEEEEeCc
Q 023772 59 HGREVRDVHVTADNSKLISCG--GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEY----SSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~s--~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~----~~~l~s~~~d~~i~iwd~~ 132 (277)
.-+++..++|.-..+.++|.- ..|.+++=| ...+..|. -|.++.|.|- ...+++.-....|.+|.+.
T Consensus 18 AiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 18 AIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hhccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 346899999985545556643 344444422 23455554 4778888774 3356666778889999875
Q ss_pred cCCCcce-----Eee---ccccCcEEEEEecCCe-EEEeecCCcEE-EEEccCCc-ccc--cCCCCCeeEEEEeCCCCEE
Q 023772 133 SHSTEPI-----QII---DSFQDSVMSVCLTKTE-IIGGSVDGTVR-TFDIRVGR-ELS--DDLGQPVNCISMSNDGNCI 199 (277)
Q Consensus 133 ~~~~~~~-----~~~---~~~~~~~~~~~~~~~~-~~~g~~d~~i~-i~d~~~~~-~~~--~~~~~~v~~~~~s~~~~~l 199 (277)
....+.. ++. +..+--...+.|.|+. +++.-....+. +++.+... .+. ......|.|.+|..||+.|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 3221111 111 1111111234445543 33322223332 34443221 111 1345689999999999998
Q ss_pred EEEecCC-eEEEEECCC
Q 023772 200 LASCLDS-TLRLLDRST 215 (277)
Q Consensus 200 ~~~~~d~-~i~~wd~~~ 215 (277)
+.+-... .-++||-..
T Consensus 171 VVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEeCCeEEEEEecCch
Confidence 7764432 346898644
No 426
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.06 E-value=9.6 Score=31.36 Aligned_cols=203 Identities=15% Similarity=0.167 Sum_probs=109.0
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEee----
Q 023772 25 RFNGDGN-YCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFR---- 99 (277)
Q Consensus 25 ~~~~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~---- 99 (277)
.|.++.. ++.+--..+.|.-|+..+++ ...+... +.+.++.....+..|+++. .-+.+++.+++..+..+.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~-~~~~~~p-~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGK-KRVFPSP-GGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCc-eEEEECC-CCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 4556665 45566677888888887664 3344433 3445555555556666653 345677776655533221
Q ss_pred cc-cCceeEEEEecCCCEEEEEeC-----------CCcEEEEeCccCCCcceEeeccccCcEEEEEecCCe--EE-Eeec
Q 023772 100 GH-ESEVNAVKFNEYSSVVVSAGY-----------DQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTE--II-GGSV 164 (277)
Q Consensus 100 ~h-~~~v~~i~~~~~~~~l~s~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~g~~ 164 (277)
+. ....+...+.|++.+.++... -|.+...|.. . ........+-.....++++++. ++ +=+.
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g--~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-G--GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-C--CEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 11 245677888888887766444 1223333321 1 1111122211122344454433 33 3444
Q ss_pred CCcEEEEEccC--Ccc------c-ccCCCCCeeEEEEeCCCCEEEEEecCC-eEEEEECCCCceEEEEeccccceeeeee
Q 023772 165 DGTVRTFDIRV--GRE------L-SDDLGQPVNCISMSNDGNCILASCLDS-TLRLLDRSTGELLQEYKGHICKSFKTDC 234 (277)
Q Consensus 165 d~~i~i~d~~~--~~~------~-~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 234 (277)
.+.|.-|++.. +.. + ........-.++.+.+|++.+++..+| .|..|+.. ++++..+.... .....+
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~ 260 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNP 260 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccc
Confidence 56777776642 110 0 111123344567788888765554444 89999998 89988876542 234555
Q ss_pred Eec
Q 023772 235 CLT 237 (277)
Q Consensus 235 ~~~ 237 (277)
+|.
T Consensus 261 ~Fg 263 (307)
T COG3386 261 AFG 263 (307)
T ss_pred eEe
Confidence 664
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.91 E-value=12 Score=32.14 Aligned_cols=107 Identities=12% Similarity=0.153 Sum_probs=59.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----e
Q 023772 21 VLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-----I 95 (277)
Q Consensus 21 V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-----~ 95 (277)
...+...++|.+++.+.....++-||.-...-...-......+.++.+.+++..++.+ .+|.+. |....++. .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 4445567888877776655455556643211111222234568899999888777655 555543 33444431 1
Q ss_pred EEeec--ccCceeEEEEecCCCEEEEEeCCCcEEEEe
Q 023772 96 RKFRG--HESEVNAVKFNEYSSVVVSAGYDQSLRAWD 130 (277)
Q Consensus 96 ~~~~~--h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd 130 (277)
..... -...+.++.+.++++.+++ +.+|.+....
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~ 354 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST 354 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC
Confidence 11111 1234788888887766554 5677666553
No 428
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.55 E-value=5.3 Score=38.75 Aligned_cols=180 Identities=16% Similarity=0.221 Sum_probs=96.2
Q ss_pred cCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEE--------cCCCCEEEEEeCCCcEEEEE
Q 023772 17 HEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV--------TADNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~--------~~~~~~l~t~s~d~~v~~wd 88 (277)
|...=..+.+.|.=..+.- +-|..+.+|+.+++.....+.+-+..|..+.. .|.-++++..+.--.|.++-
T Consensus 77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilg 155 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILG 155 (1311)
T ss_pred CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEE
Confidence 3333344556665433322 45789999999987777777766667766653 23334444444444555554
Q ss_pred CC----CCce---e--EEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeE
Q 023772 89 VS----TGRV---I--RKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEI 159 (277)
Q Consensus 89 ~~----~~~~---~--~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (277)
+. ++.. . .++......|+++....+|+.+++| .|| .+|.+.-.... .+....+..++++...+
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~-----gWf~~rc~Kiclt~s~l 227 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAED-----GWFGSRCRKICLTKSVL 227 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccC-----chhhcccccccCchhHH
Confidence 42 1111 1 1122234567888878888887765 555 56665311110 00111122222221110
Q ss_pred EEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEECCC
Q 023772 160 IGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 160 ~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
. . + +++-..+......+|..++++..-+.+.+=++.+.|+.||+..
T Consensus 228 s-----~-l----vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 228 S-----S-L----VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred H-----H-h----hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 0 0 0000011122356888899988878888888999999999865
No 429
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=89.04 E-value=10 Score=30.16 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=92.8
Q ss_pred EEeccCccEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEeecc-cCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 55 TYKSHGREVRDVHVTADNSKLISC-GGDRQIFYWDVSTGRVIRKFRGH-ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~-s~d~~v~~wd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
.+.+-...+..+.|.|+.+.|++. ...+.|...+. +|++++++.-. -...-+|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 444555679999999987766655 45677888886 47777776543 3567788888888777776568888888764
Q ss_pred cCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeEEEEE
Q 023772 133 SHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTLRLLD 212 (277)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~~wd 212 (277)
..... .... . +.-+++.. ....+..+..++|+|.++.|+.+-+..-.++|.
T Consensus 95 ~~~~~-~~~~-----~-------------------~~~~~l~~----~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~ 145 (248)
T PF06977_consen 95 DDTTS-LDRA-----D-------------------VQKISLGF----PNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE 145 (248)
T ss_dssp ---TT---EE-----E-------------------EEEEE-------S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred ccccc-cchh-----h-------------------ceEEeccc----ccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence 32211 0000 0 01111111 111234467889999877777777776666666
Q ss_pred CCC---CceEEEEe--ccc----cceeeeeeEecC-CCceEEeecCCCeEEEEECcCccceeeec
Q 023772 213 RST---GELLQEYK--GHI----CKSFKTDCCLTN-SDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 213 ~~~---~~~~~~~~--~~~----~~~~~~~~~~~~-~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
+.. ...+.... .+. ...-.....+.| .+.+++-+.++..|-.+| .+|+++..+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~ 209 (248)
T PF06977_consen 146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLS 209 (248)
T ss_dssp EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE
T ss_pred EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEE
Confidence 543 21111111 111 000011223344 455666777888888888 5677665443
No 430
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.72 E-value=11 Score=34.80 Aligned_cols=110 Identities=10% Similarity=0.160 Sum_probs=72.1
Q ss_pred EEEEEEe--CCCCEEEEEeCCCcEEEEcCCC-------C----e---------eEEEEeccCccEEEEEEc--CCCCEEE
Q 023772 21 VLAARFN--GDGNYCLSCGKDRTIRLWNPHR-------G----I---------HIKTYKSHGREVRDVHVT--ADNSKLI 76 (277)
Q Consensus 21 V~~~~~~--~~~~~l~s~s~d~~v~iwd~~~-------~----~---------~~~~~~~h~~~v~~~~~~--~~~~~l~ 76 (277)
|+.+... ...+.|+.|..||.|-+|.+++ . . +...++ ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 5555443 3557889999999999996421 0 0 111222 24578999998 7777888
Q ss_pred EEeCCCcEEEEECCC--Cce-eEEeecccCceeEEEEecCC---C---EEEEEeCCCcEEEEeC
Q 023772 77 SCGGDRQIFYWDVST--GRV-IRKFRGHESEVNAVKFNEYS---S---VVVSAGYDQSLRAWDC 131 (277)
Q Consensus 77 t~s~d~~v~~wd~~~--~~~-~~~~~~h~~~v~~i~~~~~~---~---~l~s~~~d~~i~iwd~ 131 (277)
.++....|.||-... .+. ...-..|..-|.+|.|.++. . .+++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888777775543 111 11111255667788887643 2 7888999999999887
No 431
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=88.60 E-value=14 Score=31.24 Aligned_cols=190 Identities=19% Similarity=0.188 Sum_probs=91.4
Q ss_pred EEEEEeCCCcEEEEcCCCCeeEEEEecc--CccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeeccc-CceeEE
Q 023772 32 YCLSCGKDRTIRLWNPHRGIHIKTYKSH--GREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHE-SEVNAV 108 (277)
Q Consensus 32 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~-~~v~~i 108 (277)
.+..+..||.+.-.|..+++.+-....- ...+..-.+..++ .|+.++.++.+..+|..+|+.+..+.... -.+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 3444577787887888877644322111 0111111222244 58888899999999998999888776555 111111
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCccCCCcceEeecc-ccCcE-EEEEecCCeEEEeec--CCcEEEEEccCCcccccC--
Q 023772 109 KFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDS-FQDSV-MSVCLTKTEIIGGSV--DGTVRTFDIRVGRELSDD-- 182 (277)
Q Consensus 109 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~g~~--d~~i~i~d~~~~~~~~~~-- 182 (277)
....++ .+..++.|+.+...|..+........... ....+ .........+..+.. ++.+.-.|.+.+...-..
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~ 227 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKV 227 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeeeeee
Confidence 112222 33333355666665554332211111110 00000 000022223444443 444555566555432210
Q ss_pred ---CCC-------CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEec
Q 023772 183 ---LGQ-------PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 183 ---~~~-------~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
... .+..-...-++. +..++.++.+...|..+++.+..+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 228 SQTIGRTAISTTPAVDGGPVYVDGG-VYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred ecccCcccccccccccCceEEECCc-EEEEecCCeEEEEEcCCCceEEEEec
Confidence 010 000000111222 46677788888999999998887765
No 432
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=88.52 E-value=2.5 Score=22.55 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=26.7
Q ss_pred CCCCEEEE-EeCCCcEEEEcCCCCeeEEEEeccCccEEEEEE
Q 023772 28 GDGNYCLS-CGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHV 68 (277)
Q Consensus 28 ~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 68 (277)
|++++|+. .-.+++|.++|..+++.+..+... .....+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 46666654 456889999999888887777653 33334443
No 433
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=18 Score=31.95 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=23.8
Q ss_pred CeeEEEEeCCC---CEEEEEecCCeEEEEECCCCceE
Q 023772 186 PVNCISMSNDG---NCILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 186 ~v~~~~~s~~~---~~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
.+..++|+|+. ..|..-+.|..||+||+..-+.+
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 35556788864 55667778889999998655443
No 434
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.17 E-value=7.3 Score=27.50 Aligned_cols=108 Identities=17% Similarity=0.266 Sum_probs=66.3
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCCCC--------eeEEEEeccCccEEEEEEcC-----CCCEEEEEeCCCcEEEEE
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPHRG--------IHIKTYKSHGREVRDVHVTA-----DNSKLISCGGDRQIFYWD 88 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~d~~v~~wd 88 (277)
..-.|.....-|+.+..-+.|.|++++.. ..+..+. -...|++++--+ +.+.|+.|+ ...+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 34567777777888888899999997643 2334443 245677776433 234455554 55799999
Q ss_pred CCCCceeEEeecccCceeEEEEecC---CCEEEEEeCCCcEEEEeCc
Q 023772 89 VSTGRVIRKFRGHESEVNAVKFNEY---SSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 89 ~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~~~d~~i~iwd~~ 132 (277)
++...-+. ++.-...|+++.+-.- ..-++..+.+..|.-||-.
T Consensus 80 V~~N~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 80 VENNSDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred cccCchhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 98765543 3334567777776432 2334445556667777643
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.05 E-value=15 Score=31.04 Aligned_cols=139 Identities=11% Similarity=0.007 Sum_probs=66.4
Q ss_pred eEEEEecCCCEEEEEe-----------CCC-cEEEEeCccCC--CcceEeeccccCcEEEEEecCCeEEEeecCCcEEEE
Q 023772 106 NAVKFNEYSSVVVSAG-----------YDQ-SLRAWDCRSHS--TEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTF 171 (277)
Q Consensus 106 ~~i~~~~~~~~l~s~~-----------~d~-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~ 171 (277)
..|++.++++++++.. ..+ .|.+++-.... ......+.........+.+.+..++++......++.
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~~~~i~~~~ 96 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVATPPDILFLR 96 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeCCCeEEEEe
Confidence 4577888887776643 122 56666543222 112222222222234444444445555544433343
Q ss_pred EccC------C-cccccC-------CCCCeeEEEEeCCCCEEEEEecC-------------------CeEEEEECCCCce
Q 023772 172 DIRV------G-RELSDD-------LGQPVNCISMSNDGNCILASCLD-------------------STLRLLDRSTGEL 218 (277)
Q Consensus 172 d~~~------~-~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d-------------------~~i~~wd~~~~~~ 218 (277)
|... . +.+... ..+..+.+.|.|+|.++++-+.. +.|.-+|...++.
T Consensus 97 d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~ 176 (367)
T TIGR02604 97 DKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL 176 (367)
T ss_pred CCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE
Confidence 4321 1 111111 12347789999999876654421 3455556654443
Q ss_pred EEEEeccccceeeeeeEecCCCceEEeec
Q 023772 219 LQEYKGHICKSFKTDCCLTNSDAHVTGGS 247 (277)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 247 (277)
..+... .....-.++.++|.++++-.
T Consensus 177 -e~~a~G--~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 177 -RVVAHG--FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred -EEEecC--cCCCccceECCCCCEEEEcc
Confidence 223211 11123356777787766533
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=87.38 E-value=14 Score=31.30 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=54.9
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCC-----Ce---eEEEEec----cCccEEEEEEcCCCCEEEEEeCC------
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHR-----GI---HIKTYKS----HGREVRDVHVTADNSKLISCGGD------ 81 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~-----~~---~~~~~~~----h~~~v~~~~~~~~~~~l~t~s~d------ 81 (277)
..+.+++.++| ++++ +.....++.|... ++ .+..+.. +......+.|.|++.+.++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 34678888888 5444 4544444545421 11 1222322 23457889999999877765521
Q ss_pred -------------CcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEe
Q 023772 82 -------------RQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAG 121 (277)
Q Consensus 82 -------------~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~ 121 (277)
+.+.-++..+++....-.++. ..+.++|+++++++++-.
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEEEEecCcC-CCccceECCCCCEEEEcc
Confidence 345555555444322122222 235688988888877644
No 437
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=87.29 E-value=2 Score=21.56 Aligned_cols=25 Identities=40% Similarity=0.577 Sum_probs=20.2
Q ss_pred EEEEEecCCeEEEEECCCCceEEEE
Q 023772 198 CILASCLDSTLRLLDRSTGELLQEY 222 (277)
Q Consensus 198 ~l~~~~~d~~i~~wd~~~~~~~~~~ 222 (277)
.+++++.++.++.+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999888877653
No 438
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=86.49 E-value=2.1 Score=21.45 Aligned_cols=26 Identities=15% Similarity=0.392 Sum_probs=21.5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEe
Q 023772 73 SKLISCGGDRQIFYWDVSTGRVIRKF 98 (277)
Q Consensus 73 ~~l~t~s~d~~v~~wd~~~~~~~~~~ 98 (277)
..++.++.++.+..+|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46788889999999999998877653
No 439
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.38 E-value=3.1 Score=22.15 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.6
Q ss_pred CCCceEEe-ecCCCeEEEEECcCccceeeeccC
Q 023772 238 NSDAHVTG-GSEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 238 ~~~~~l~s-gs~d~~i~iwd~~~~~~~~~~~~h 269 (277)
|++++|.. .-.+++|.++|..+++.+.++..-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 34555444 456889999999999998888743
No 440
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.32 E-value=3.5 Score=35.37 Aligned_cols=166 Identities=15% Similarity=0.157 Sum_probs=92.6
Q ss_pred EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEee-ccc----Ccee-EEEEecCCCEEEEEeCCCcEEE
Q 023772 56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV-IRKFR-GHE----SEVN-AVKFNEYSSVVVSAGYDQSLRA 128 (277)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~-~~~~~-~h~----~~v~-~i~~~~~~~~l~s~~~d~~i~i 128 (277)
+.....++..+-..|+++.++.-+. .++.++++.+... ++.+. ... ..|. ++.....+.-++.++.||-|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 3344456778888999998765544 5788888764322 11111 101 1122 1112233456777888988877
Q ss_pred E-eCccCCC---cceEeeccccCcEEEEEec--CCeEEEeecCCcEEEEEccCCcccc-cCCCCCeeEEEEeCCCCEEEE
Q 023772 129 W-DCRSHST---EPIQIIDSFQDSVMSVCLT--KTEIIGGSVDGTVRTFDIRVGRELS-DDLGQPVNCISMSNDGNCILA 201 (277)
Q Consensus 129 w-d~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~g~~d~~i~i~d~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~ 201 (277)
| |.+.... ..+..+.-.+.++..+.+. .+.+++-...|++..+.-...+.+. ...-+.+.-+++||.+.++++
T Consensus 295 WFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 295 WFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLS 374 (733)
T ss_pred eeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchhee
Confidence 7 4443221 2222222223333333333 2346666777888776544333221 222346677899999998876
Q ss_pred EecCCeEEEEECCCCceEEEEe
Q 023772 202 SCLDSTLRLLDRSTGELLQEYK 223 (277)
Q Consensus 202 ~~~d~~i~~wd~~~~~~~~~~~ 223 (277)
- ..|.|+++.+++..+.-.+.
T Consensus 375 e-~~gki~~~~l~Nr~Peisws 395 (733)
T COG4590 375 E-DQGKIRLAQLENRNPEISWS 395 (733)
T ss_pred e-cCCceEEEEecCCCCCccHH
Confidence 4 56789999988765544443
No 441
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.80 E-value=19 Score=29.78 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=32.3
Q ss_pred cCCeEEEeec-----CCcEEEEEccCCc--ccccCC-CCCeeEEEEeCCCCEEEEEecCCe----EEEEECCCCce
Q 023772 155 TKTEIIGGSV-----DGTVRTFDIRVGR--ELSDDL-GQPVNCISMSNDGNCILASCLDST----LRLLDRSTGEL 218 (277)
Q Consensus 155 ~~~~~~~g~~-----d~~i~i~d~~~~~--~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~----i~~wd~~~~~~ 218 (277)
.....+.|+. ...+..||+.+.+ .+.... .......+...+++.++.|+.++. +..||.++.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3444445553 2357778887543 221111 111222223345667777776542 45788877654
No 442
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=85.55 E-value=3.3 Score=21.84 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=22.9
Q ss_pred EEEEEecCCeEEEEECCCCceEEEEec
Q 023772 198 CILASCLDSTLRLLDRSTGELLQEYKG 224 (277)
Q Consensus 198 ~l~~~~~d~~i~~wd~~~~~~~~~~~~ 224 (277)
.+..++.||.++-.|.++|+.+..+..
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356668999999999999999988764
No 443
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=85.30 E-value=24 Score=30.52 Aligned_cols=185 Identities=19% Similarity=0.268 Sum_probs=85.0
Q ss_pred CCCEEEEEe-CCCcEEEEcCCC----CeeEEEEec---cC----ccEEEEEEcCCCCEEEEE--eCC----CcEEEEECC
Q 023772 29 DGNYCLSCG-KDRTIRLWNPHR----GIHIKTYKS---HG----REVRDVHVTADNSKLISC--GGD----RQIFYWDVS 90 (277)
Q Consensus 29 ~~~~l~s~s-~d~~v~iwd~~~----~~~~~~~~~---h~----~~v~~~~~~~~~~~l~t~--s~d----~~v~~wd~~ 90 (277)
+.++|+..+ ....|.|.|+.+ .+..++++. +. .....+..-|+++.++|+ ..+ |-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456776655 678888998763 345555553 11 234455666888888885 222 467888888
Q ss_pred CCceeEEeecccC---ceeEEEEecCCCEEEEEe--------------------CCCcEEEEeCccCCCcceEeeccccC
Q 023772 91 TGRVIRKFRGHES---EVNAVKFNEYSSVVVSAG--------------------YDQSLRAWDCRSHSTEPIQIIDSFQD 147 (277)
Q Consensus 91 ~~~~~~~~~~h~~---~v~~i~~~~~~~~l~s~~--------------------~d~~i~iwd~~~~~~~~~~~~~~~~~ 147 (277)
+-++...+..... --...-+.|..+.++|.. ...++.+||+.... ..+.+.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~--~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK--LLQTIDLGEE 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE--EEEEEES-TT
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc--EeeEEecCCC
Confidence 7777766654322 123445567777777763 45789999997653 3444433222
Q ss_pred c--EEEEEe--cCCe---EEEeecCCcEEEEEc-cCCc----c---ccc---------C-------CCCCeeEEEEeCCC
Q 023772 148 S--VMSVCL--TKTE---IIGGSVDGTVRTFDI-RVGR----E---LSD---------D-------LGQPVNCISMSNDG 196 (277)
Q Consensus 148 ~--~~~~~~--~~~~---~~~g~~d~~i~i~d~-~~~~----~---~~~---------~-------~~~~v~~~~~s~~~ 196 (277)
. ...+.+ ++.. ++.+.....|-.|-- ..++ . +.. . ...-++.+.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2 222222 3322 444444444443322 2221 0 100 0 02347889999999
Q ss_pred CEEEEEe-cCCeEEEEECCC
Q 023772 197 NCILASC-LDSTLRLLDRST 215 (277)
Q Consensus 197 ~~l~~~~-~d~~i~~wd~~~ 215 (277)
++|..+. .+|.+|.||+..
T Consensus 324 rfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SS
T ss_pred CEEEEEcccCCcEEEEecCC
Confidence 9986655 689999999865
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.27 E-value=16 Score=29.62 Aligned_cols=93 Identities=14% Similarity=0.159 Sum_probs=57.4
Q ss_pred CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEeecc-----cCceeE
Q 023772 39 DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCG------GDRQIFYWDVSTGRVIRKFRGH-----ESEVNA 107 (277)
Q Consensus 39 d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s------~d~~v~~wd~~~~~~~~~~~~h-----~~~v~~ 107 (277)
-..|.+||..+.+...--..-.+.|+++.|..+++.++.|. ....+..||.++.. ...+... ..+|..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEE
Confidence 35789999877655544444567899999997777777764 35568889887654 2233331 367877
Q ss_pred EEEec-CC-CEEEEEe---CCCcEEEEeCc
Q 023772 108 VKFNE-YS-SVVVSAG---YDQSLRAWDCR 132 (277)
Q Consensus 108 i~~~~-~~-~~l~s~~---~d~~i~iwd~~ 132 (277)
+.+.. +. +..+.|. .+..+..||-.
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 77743 22 3443332 23446666643
No 445
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=84.98 E-value=3.4 Score=21.77 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=22.8
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEeec
Q 023772 74 KLISCGGDRQIFYWDVSTGRVIRKFRG 100 (277)
Q Consensus 74 ~l~t~s~d~~v~~wd~~~~~~~~~~~~ 100 (277)
.++.+..||.+.-.|.++|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668999999999999999887764
No 446
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.50 E-value=17 Score=31.50 Aligned_cols=104 Identities=14% Similarity=0.188 Sum_probs=68.3
Q ss_pred eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCee----EEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 023772 14 LKGHEGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIH----IKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDV 89 (277)
Q Consensus 14 l~~H~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~ 89 (277)
-..-+|+|.++.|++|.+.||.-=.|.+|.+.+-...+. ..+.+..+..|....|..+ .-++-.+..| +-+|.+
T Consensus 62 dm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v 139 (657)
T KOG2377|consen 62 DMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQV 139 (657)
T ss_pred eecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEE
Confidence 345678999999999999999999999999998632221 2223334456888888765 4454444333 556655
Q ss_pred CCC-ceeEEeecccCceeEEEEecCCCEEEE
Q 023772 90 STG-RVIRKFRGHESEVNAVKFNEYSSVVVS 119 (277)
Q Consensus 90 ~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s 119 (277)
... +.++..+.|+..|+--.|.++.+.++-
T Consensus 140 ~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 140 LPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred chhhhhhhhhhhcccCccEEEEccccceEee
Confidence 432 234555667777777777777665433
No 447
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.48 E-value=26 Score=30.29 Aligned_cols=175 Identities=16% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCCEEEEE--eCC----CcEEEEcCCCCeeEEEEeccC---ccEEEEEEcCCCCEEEEEeCC-----------------
Q 023772 28 GDGNYCLSC--GKD----RTIRLWNPHRGIHIKTYKSHG---REVRDVHVTADNSKLISCGGD----------------- 81 (277)
Q Consensus 28 ~~~~~l~s~--s~d----~~v~iwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~t~s~d----------------- 81 (277)
|+|+.++|+ ..+ |.+.+.|-++.+.....+... .--....+.|..+.++|+..-
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 788888875 333 567788888777766665432 235677888888888887532
Q ss_pred ---CcEEEEECCCCceeEEeecccC--ceeEEEEec--CCCE-EEEEeCCCcEEEEeCccCCC---cceEeecc------
Q 023772 82 ---RQIFYWDVSTGRVIRKFRGHES--EVNAVKFNE--YSSV-VVSAGYDQSLRAWDCRSHST---EPIQIIDS------ 144 (277)
Q Consensus 82 ---~~v~~wd~~~~~~~~~~~~h~~--~v~~i~~~~--~~~~-l~s~~~d~~i~iwd~~~~~~---~~~~~~~~------ 144 (277)
.++.+||..+.++++++.--.. ....+.|.. +... ++.+....+|..|--..... +.+..+..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 5799999999999888764322 234566643 3333 44444555555553211110 11111110
Q ss_pred ----c-------cCcEEEEEe--cCCeE-EEeecCCcEEEEEccCCccccc---------------------CCCCCeeE
Q 023772 145 ----F-------QDSVMSVCL--TKTEI-IGGSVDGTVRTFDIRVGRELSD---------------------DLGQPVNC 189 (277)
Q Consensus 145 ----~-------~~~~~~~~~--~~~~~-~~g~~d~~i~i~d~~~~~~~~~---------------------~~~~~v~~ 189 (277)
. +.-++.+.+ +...| ++.=.+|.+|.||+........ ......+.
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 0 122344333 34444 4556689999999965321110 01123467
Q ss_pred EEEeCCCCEEEEE
Q 023772 190 ISMSNDGNCILAS 202 (277)
Q Consensus 190 ~~~s~~~~~l~~~ 202 (277)
+.+|.||+.|...
T Consensus 379 vqlS~DGkRlYvT 391 (461)
T PF05694_consen 379 VQLSLDGKRLYVT 391 (461)
T ss_dssp EEE-TTSSEEEEE
T ss_pred EEEccCCeEEEEE
Confidence 8888888876544
No 448
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.32 E-value=21 Score=28.28 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=43.2
Q ss_pred EEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCC--cee-EEe---ecccCceeEEEEec
Q 023772 42 IRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-D--RQIFYWDVSTG--RVI-RKF---RGHESEVNAVKFNE 112 (277)
Q Consensus 42 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d--~~v~~wd~~~~--~~~-~~~---~~h~~~v~~i~~~~ 112 (277)
-.+||+.+++....--...--+.+-.+.++|+.|.+|+. | ..+++++..+. .+- ... -.....=.+....+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 467888876543222222333455567789999998875 2 35777775430 110 000 01111222344456
Q ss_pred CCCEEEEEeCC
Q 023772 113 YSSVVVSAGYD 123 (277)
Q Consensus 113 ~~~~l~s~~~d 123 (277)
||+.++.|+.+
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 77777777665
No 449
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=82.70 E-value=25 Score=28.87 Aligned_cols=73 Identities=23% Similarity=0.419 Sum_probs=51.4
Q ss_pred CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceee---eeeEecCCCceEEeecCCCeEEEEECc
Q 023772 186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFK---TDCCLTNSDAHVTGGSEDGYIYFWDLV 258 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~sgs~d~~i~iwd~~ 258 (277)
.++++...++|.+|++.-.-.+|.+.|.++|+.+..+.|.....+. ...+..-+-+++-.+..++.|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 4888898999999999988889999999999999888765221111 112223334445455677788888763
No 450
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.72 E-value=5.8 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=19.3
Q ss_pred cCCcEEEEEEeCCCCEEEE-EeCC--CcEEEE
Q 023772 17 HEGAVLAARFNGDGNYCLS-CGKD--RTIRLW 45 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s-~s~d--~~v~iw 45 (277)
..+.-....|+|||++|+- ...+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456678899999998884 4444 555555
No 451
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.58 E-value=28 Score=28.59 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=71.0
Q ss_pred EeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 56 YKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
...-.+.+..+..++++.+++.++.-....-||.....=...-+.-..+|.+|.|.|++.+.+.+ ..|.|+.=+.....
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34445678888889999888777555555677654221111222346789999999998876654 78888876621110
Q ss_pred C---cceEeeccccCcEEEEEecC-CeEEEeecCCcEEEEEccCCccccc-----CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 136 T---EPIQIIDSFQDSVMSVCLTK-TEIIGGSVDGTVRTFDIRVGRELSD-----DLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 136 ~---~~~~~~~~~~~~~~~~~~~~-~~~~~g~~d~~i~i~d~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
. +++.......-.+..+.+.+ +.+..++..|.+.+ -...++.... ........+.|.+..+-++. +.+|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G 296 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG 296 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence 0 00100111122356666654 45666666665543 2223332221 22345777888765554444 5677
Q ss_pred eEEEE
Q 023772 207 TLRLL 211 (277)
Q Consensus 207 ~i~~w 211 (277)
.|--|
T Consensus 297 ~ll~~ 301 (302)
T PF14870_consen 297 VLLRY 301 (302)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66444
No 452
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.20 E-value=26 Score=27.91 Aligned_cols=142 Identities=13% Similarity=0.143 Sum_probs=78.3
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEe-CccCCCc
Q 023772 62 EVRDVHVTADNSKLISCG---GDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWD-CRSHSTE 137 (277)
Q Consensus 62 ~v~~~~~~~~~~~l~t~s---~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~ 137 (277)
.+.+.+++++++.++... ....+.++... ....... -...+..-.|.+++...+....+...+++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 23345555433 3222221 122666678888887777766666666663 2222222
Q ss_pred ceEeeccccC-cEEEEEecCC--eEEE---eecCCcEEEEEccCCc-----c------cccCCCCCeeEEEEeCCCCEEE
Q 023772 138 PIQIIDSFQD-SVMSVCLTKT--EIIG---GSVDGTVRTFDIRVGR-----E------LSDDLGQPVNCISMSNDGNCIL 200 (277)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~~--~~~~---g~~d~~i~i~d~~~~~-----~------~~~~~~~~v~~~~~s~~~~~l~ 200 (277)
+...-..... .|..+.++++ .++. ...++.|.+--+.... . +.......+..++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 2222111111 5666666654 3332 2334666665443111 1 1112235788999999998776
Q ss_pred EEecCC
Q 023772 201 ASCLDS 206 (277)
Q Consensus 201 ~~~~d~ 206 (277)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665443
No 453
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.17 E-value=46 Score=30.81 Aligned_cols=185 Identities=11% Similarity=0.160 Sum_probs=89.4
Q ss_pred eCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcce-EeeccccCcEEEEEecCC
Q 023772 79 GGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPI-QIIDSFQDSVMSVCLTKT 157 (277)
Q Consensus 79 s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (277)
+.-..|++++. +|+++.+......++-.+.|+.+. .|+....||++.+|++-....+.. ...+.....|..+.+-.+
T Consensus 61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 61 SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 34456888886 456655554444477779998765 455568999999999753222111 111222333444444445
Q ss_pred eEEEeecCCcEEEE-EccCCc--cccc-CCC-CCeeEEEEeCCC--CEEEEEe--cCCeEEEEECCCCceEEEEeccccc
Q 023772 158 EIIGGSVDGTVRTF-DIRVGR--ELSD-DLG-QPVNCISMSNDG--NCILASC--LDSTLRLLDRSTGELLQEYKGHICK 228 (277)
Q Consensus 158 ~~~~g~~d~~i~i~-d~~~~~--~~~~-~~~-~~v~~~~~s~~~--~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~ 228 (277)
.++.-..+|.+.+- +..... .... ... .+-+|-+.-+++ ..++..- ..+ ..++...... ++...-....
T Consensus 139 GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-~q~~~~~~~~ 216 (829)
T KOG2280|consen 139 GVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-VQLHALSWPN 216 (829)
T ss_pred ceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-ccccccCCCC
Confidence 66655556665442 222111 1111 110 111222222221 1111110 111 0111111111 0111100001
Q ss_pred eeeeeeEecCCCceEEeecCCCeEEEEECcCccceeeec
Q 023772 229 SFKTDCCLTNSDAHVTGGSEDGYIYFWDLVDASVVAKFK 267 (277)
Q Consensus 229 ~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~ 267 (277)
....-+..||+.++++-=.++|.|.+-+++..+..-.+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 223446678888888888888999888877766655544
No 454
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.68 E-value=0.24 Score=42.41 Aligned_cols=145 Identities=12% Similarity=0.189 Sum_probs=90.1
Q ss_pred CcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeE-
Q 023772 19 GAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKL-ISCGGDRQIFYWDVSTGRVIR- 96 (277)
Q Consensus 19 ~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~s~d~~v~~wd~~~~~~~~- 96 (277)
..-....|-+++.-++-++.+..+..||-. ++...... ..+....++|..++..+ +.+-..+.+.+||+.+.....
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 333456677777778888889999999943 33333333 24556678888877655 445667899999997543211
Q ss_pred Eee-cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCC-eEEEeecCCcEE
Q 023772 97 KFR-GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKT-EIIGGSVDGTVR 169 (277)
Q Consensus 97 ~~~-~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~d~~i~ 169 (277)
.+. .|.... +.|++....++.+...|.+.+++-..... +.....+......+++... ..+.++.|..+.
T Consensus 113 E~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~--iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 113 ESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRR--IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred hccCcchHHH--HhhccCCccccccccccceEEEeccchhh--hhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 111 122222 56777777777778889999998765432 2233446667777776643 355555555443
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=79.44 E-value=0.37 Score=41.29 Aligned_cols=140 Identities=13% Similarity=0.194 Sum_probs=81.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCC-EEEEEeCCCcEEEEeCccCCCcceEee
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSS-VVVSAGYDQSLRAWDCRSHSTEPIQII 142 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~ 142 (277)
....|-+++..++.+..+..+..||-.. +.+-.... +...-.++|..++. .++.+-..+.+.+||+..........-
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~-tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNP-TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccCC-chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3445667666688888888899998543 33322221 22233466665544 344556778999999875322111111
Q ss_pred ccccCcEEEEEecCCeEEEeecCCcEEEEEccCCccccc--CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 143 DSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSD--DLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
..+......+......++.|...+.+.+|+..+.+.+.. .+...+.++++.+++.. +.++.|.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDN 180 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHH
Confidence 122222222232334466677889999999887765543 24457888899887754 4444333
No 456
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.00 E-value=17 Score=28.05 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=37.6
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEeecccCceeEEEEecCCCEEEEE
Q 023772 64 RDVHVTADNSKLISCGGDRQIFYWDVST--GRVIRKFRGHESEVNAVKFNEYSSVVVSA 120 (277)
Q Consensus 64 ~~~~~~~~~~~l~t~s~d~~v~~wd~~~--~~~~~~~~~h~~~v~~i~~~~~~~~l~s~ 120 (277)
..++-.+. +.|+.+...+.|.+|++++ .+++.+|.. -++|..+.+++.|++++|=
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEE
Confidence 33444332 3444445667899999983 345666653 4789999999999999985
No 457
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.35 E-value=37 Score=30.05 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=22.5
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcC
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNP 47 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~ 47 (277)
.|..+..++.|..++-.|.+|.+.++=.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp 132 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELP 132 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEch
Confidence 3567778999999998899998887653
No 458
>PLN02153 epithiospecifier protein
Probab=78.05 E-value=39 Score=28.15 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=31.0
Q ss_pred CCEEEEEeCC-------CcEEEEcCCCCeeEEEEeccC-ccE---EEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 023772 30 GNYCLSCGKD-------RTIRLWNPHRGIHIKTYKSHG-REV---RDVHVTADNSKLISCGGD-----RQIFYWDVSTG 92 (277)
Q Consensus 30 ~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~h~-~~v---~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~ 92 (277)
+.+.+.||.+ ..+.+||+.+.+-...-.... ... ......-+++.++.|+.+ ..+.+||+.+.
T Consensus 33 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 33 DKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 4566666653 257778887765432111000 000 111122245566666643 35778888764
No 459
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.02 E-value=16 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=24.8
Q ss_pred CceeEEEEecCC------CEEEEEeCCCcEEEEeCcc
Q 023772 103 SEVNAVKFNEYS------SVVVSAGYDQSLRAWDCRS 133 (277)
Q Consensus 103 ~~v~~i~~~~~~------~~l~s~~~d~~i~iwd~~~ 133 (277)
..+.+++|+|.| .+|+....++.+.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 377889999853 4788889999999997653
No 460
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.97 E-value=61 Score=30.34 Aligned_cols=73 Identities=22% Similarity=0.286 Sum_probs=51.6
Q ss_pred cEEEEEEeCCCCEEEEEeCCCcEEEEcCCC---------Cee---EEEE--------eccCccEEEEEEcCC---CCEEE
Q 023772 20 AVLAARFNGDGNYCLSCGKDRTIRLWNPHR---------GIH---IKTY--------KSHGREVRDVHVTAD---NSKLI 76 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~---------~~~---~~~~--------~~h~~~v~~~~~~~~---~~~l~ 76 (277)
.|..+.++++|++++-.|..|...+.=+.. |+. -+++ ..+...|..+.|+|. +..|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 478899999999999888876665543221 111 1111 134457899999986 47888
Q ss_pred EEeCCCcEEEEECCCC
Q 023772 77 SCGGDRQIFYWDVSTG 92 (277)
Q Consensus 77 t~s~d~~v~~wd~~~~ 92 (277)
.=..|+++++||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 8888999999999753
No 461
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=14 Score=35.70 Aligned_cols=112 Identities=7% Similarity=-0.076 Sum_probs=71.3
Q ss_pred cEEEEEEeCCCCEE--EEEeCCCcEEEEcCCCCee--------EE---EEeccCccEEEEEEcCCCC-EEEEEeCCCcEE
Q 023772 20 AVLAARFNGDGNYC--LSCGKDRTIRLWNPHRGIH--------IK---TYKSHGREVRDVHVTADNS-KLISCGGDRQIF 85 (277)
Q Consensus 20 ~V~~~~~~~~~~~l--~s~s~d~~v~iwd~~~~~~--------~~---~~~~h~~~v~~~~~~~~~~-~l~t~s~d~~v~ 85 (277)
++..+..++|+... +..+++-.|..||+.+-.. ++ +......-..++.|.|.-. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 45555556665543 3456666888899764211 11 1111223355677776432 355667889998
Q ss_pred EEECCCCc-eeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 86 YWDVSTGR-VIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 86 ~wd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
+..+.... .+.++ .-...+++++|+|.|+.++.|-..|++.-|...
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 88765432 22232 345678899999999999999999999998754
No 462
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=77.32 E-value=37 Score=27.55 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=48.0
Q ss_pred cCCcEEEEEEeCCCCEEEEEe------CCCcEEEEcCCCCeeEEEEec-----cCccEEEEEEcC-CCC-EEEEEe-C--
Q 023772 17 HEGAVLAARFNGDGNYCLSCG------KDRTIRLWNPHRGIHIKTYKS-----HGREVRDVHVTA-DNS-KLISCG-G-- 80 (277)
Q Consensus 17 H~~~V~~~~~~~~~~~l~s~s------~d~~v~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~-~~~-~l~t~s-~-- 80 (277)
=.+.|..+.|..+.++++.|. ....+..||..+.... .+.. -.++|..+.+.. +.. ..+.|. .
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 457899999997777777764 5678889998776432 2322 136788887753 333 333432 2
Q ss_pred CCcEEEEECCCCcee
Q 023772 81 DRQIFYWDVSTGRVI 95 (277)
Q Consensus 81 d~~v~~wd~~~~~~~ 95 (277)
+..+..||-.....+
T Consensus 114 ~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 114 STFLMKYDGSSWSSI 128 (281)
T ss_pred CceEEEEcCCceEec
Confidence 234667765544433
No 463
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=76.88 E-value=7 Score=18.96 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=15.0
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEE
Q 023772 187 VNCISMSNDGNCILASCLDSTLRLL 211 (277)
Q Consensus 187 v~~~~~s~~~~~l~~~~~d~~i~~w 211 (277)
...++++++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4556677777666665555555543
No 464
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=76.82 E-value=12 Score=34.81 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=70.8
Q ss_pred EEEEEeCCCcEEEEeCccCCC-cceEe-eccccCcEEEEEecCCeEEEeecCCcEEE--------EEccCCcccccCCCC
Q 023772 116 VVVSAGYDQSLRAWDCRSHST-EPIQI-IDSFQDSVMSVCLTKTEIIGGSVDGTVRT--------FDIRVGRELSDDLGQ 185 (277)
Q Consensus 116 ~l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~g~~d~~i~i--------~d~~~~~~~~~~~~~ 185 (277)
.+..|+.++.+.++.-..... +.... .......+..+.+....+..|..||++-. ||.+ .......-..
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~e-p~~~~~~g~l 627 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGE-PNISIPTGSL 627 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccccccCccCCccccccCCCCCCCCCC-CccccccCCc
Confidence 455567777777776542211 11111 11112233344444444555555665543 4443 1111122235
Q ss_pred CeeEEEEeCCCCEEEEEecCCeEEEEECCCCceEEEEeccccceeeeee-EecCCCceEEeecCCCeEEEEECcCc
Q 023772 186 PVNCISMSNDGNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTDC-CLTNSDAHVTGGSEDGYIYFWDLVDA 260 (277)
Q Consensus 186 ~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~sgs~d~~i~iwd~~~~ 260 (277)
++++.++..| ++.++.+|.+.++...+....+....|......+.+ .....+-+++-.+-| .+++.+.++.
T Consensus 628 Pvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 628 PVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred cccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccccc
Confidence 7888888765 567788999999998776555554444322223333 233445555544444 4444455443
No 465
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=76.31 E-value=55 Score=28.94 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=55.2
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCcc---EEEEEEcCCCCEEEEEeC-------------CCcEEEE
Q 023772 24 ARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGRE---VRDVHVTADNSKLISCGG-------------DRQIFYW 87 (277)
Q Consensus 24 ~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~---v~~~~~~~~~~~l~t~s~-------------d~~v~~w 87 (277)
+..-++|.+++..+ ..++.+|+. |+.+..+....+. -+.+...|+|++|+.+.. ...|...
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 44567888876555 788888874 6666555543322 467888899999887772 1235666
Q ss_pred ECCCCceeEEee--cc----c---------------------CceeEEEEec-CCCEEEEEeCCCcEEEEeCcc
Q 023772 88 DVSTGRVIRKFR--GH----E---------------------SEVNAVKFNE-YSSVVVSAGYDQSLRAWDCRS 133 (277)
Q Consensus 88 d~~~~~~~~~~~--~h----~---------------------~~v~~i~~~~-~~~~l~s~~~d~~i~iwd~~~ 133 (277)
| .+|+.+..+. .| . --++++.+.+ ++.+++|+-.-..|...|.++
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 6 6777665532 11 0 1368889988 444555543344677777444
No 466
>PLN02193 nitrile-specifier protein
Probab=76.26 E-value=54 Score=28.87 Aligned_cols=68 Identities=12% Similarity=0.009 Sum_probs=36.0
Q ss_pred CCCEEEEEecC----CeEEEEECCCCceEEEEe-cc-ccceeeeeeEecCCCceEEeecCC--------------CeEEE
Q 023772 195 DGNCILASCLD----STLRLLDRSTGELLQEYK-GH-ICKSFKTDCCLTNSDAHVTGGSED--------------GYIYF 254 (277)
Q Consensus 195 ~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~sgs~d--------------~~i~i 254 (277)
+++.++.++.+ ..+.+||..+.+..+.-. +. ..... ...+..-++++++.|+.+ +.+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~ 406 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERS-VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFA 406 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcc-eeEEEEECCEEEEECCccCCccccccCccceeccEEE
Confidence 56677777655 458899998776533211 00 00111 111223345565555532 24788
Q ss_pred EECcCccce
Q 023772 255 WDLVDASVV 263 (277)
Q Consensus 255 wd~~~~~~~ 263 (277)
||..+.+..
T Consensus 407 ~D~~t~~W~ 415 (470)
T PLN02193 407 LDTETLQWE 415 (470)
T ss_pred EEcCcCEEE
Confidence 998876543
No 467
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=75.97 E-value=19 Score=28.66 Aligned_cols=71 Identities=17% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCeeEEEEeC------C-CCEEEEEecCCeEEEEECCCCceEEEEeccccceeeee-eEecCCCceEEeecCCCeEEEE
Q 023772 185 QPVNCISMSN------D-GNCILASCLDSTLRLLDRSTGELLQEYKGHICKSFKTD-CCLTNSDAHVTGGSEDGYIYFW 255 (277)
Q Consensus 185 ~~v~~~~~s~------~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~sgs~d~~i~iw 255 (277)
..|+||+--. + -..|+.|.++|.|++.|.+.......+.--.-+..... -.+..-+..++.++.||.|++-
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 3567765321 1 24689999999999999988777766553322222111 1121134557778899999764
No 468
>PLN02153 epithiospecifier protein
Probab=75.96 E-value=45 Score=27.79 Aligned_cols=14 Identities=14% Similarity=0.501 Sum_probs=9.9
Q ss_pred CeEEEEECCCCceE
Q 023772 206 STLRLLDRSTGELL 219 (277)
Q Consensus 206 ~~i~~wd~~~~~~~ 219 (277)
..+.+||..+.+-.
T Consensus 217 ~~v~~yd~~~~~W~ 230 (341)
T PLN02153 217 NAVQFFDPASGKWT 230 (341)
T ss_pred CceEEEEcCCCcEE
Confidence 35788998876544
No 469
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.82 E-value=9.5 Score=35.08 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=50.4
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRK 97 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~ 97 (277)
..-++++.-+|.|.-++++..||++++|+..+.+..+.... ..|-..+.|...| ++++..|..+--|.- .|.+.+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnhg--l~~~tsdrr~la~~~-dgvvqqq 89 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNHG--LVTATSDRRALAWKE-DGVVQQQ 89 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeeccc--eEEEeccchhheeec-cCcchhh
Confidence 34567788889999999999999999999765433222222 2344556665443 677777888888853 4433333
No 470
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=73.55 E-value=55 Score=27.65 Aligned_cols=193 Identities=16% Similarity=0.128 Sum_probs=94.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEeecc--cCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcE
Q 023772 72 NSKLISCGGDRQIFYWDVSTGRVIRKFRGH--ESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSV 149 (277)
Q Consensus 72 ~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 149 (277)
+..++.+..+|.+.-.|.++++.+.+...- ...+..-.+..+++ ++.++.++.+..+|.++++......... ....
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~~~ 145 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-SPYY 145 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-CeEE
Confidence 345666688999999999998876543322 12222222333554 6677888888888876554332222222 0001
Q ss_pred EEEEecCCe-EEEeecCCcEEEEEccCCccccc-CC----CCCeeEEEEeCCCCEEEEEec--CCeEEEEECCCCceEEE
Q 023772 150 MSVCLTKTE-IIGGSVDGTVRTFDIRVGRELSD-DL----GQPVNCISMSNDGNCILASCL--DSTLRLLDRSTGELLQE 221 (277)
Q Consensus 150 ~~~~~~~~~-~~~g~~d~~i~i~d~~~~~~~~~-~~----~~~v~~~~~s~~~~~l~~~~~--d~~i~~wd~~~~~~~~~ 221 (277)
..-..-.+. +..++.++.+...|..++...-. .. ...+..--...++ .+..+.. ++.+.-.|..+|.....
T Consensus 146 ~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 146 ASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred ecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 111111122 33333567766666665543211 00 1111100002233 3444444 55677777878877665
Q ss_pred Eeccccceee---eeeEe-----cCCCceEEeecCCCeEEEEECcCccceeeecc
Q 023772 222 YKGHICKSFK---TDCCL-----TNSDAHVTGGSEDGYIYFWDLVDASVVAKFKA 268 (277)
Q Consensus 222 ~~~~~~~~~~---~~~~~-----~~~~~~l~sgs~d~~i~iwd~~~~~~~~~~~~ 268 (277)
...+...... ....+ ..++ -+..++.++.+.-.|..+++.+=++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceEEEEec
Confidence 3321110000 00000 1111 234566777788888888887766655
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=72.90 E-value=29 Score=32.11 Aligned_cols=95 Identities=9% Similarity=0.130 Sum_probs=58.7
Q ss_pred EEEeecCCcEEEEEccCCc---------------------ccccCCCCCeeEEEEe--CCCCEEEEEecCCeEEEEECCC
Q 023772 159 IIGGSVDGTVRTFDIRVGR---------------------ELSDDLGQPVNCISMS--NDGNCILASCLDSTLRLLDRST 215 (277)
Q Consensus 159 ~~~g~~d~~i~i~d~~~~~---------------------~~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~~wd~~~ 215 (277)
|+.+..||.+.+|-.+.-. .+....+.....++++ ...++||+++....|.+|-+..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 6678889999999753110 0111234578889998 7788888888888888876543
Q ss_pred C--ceE--EEE-eccccceeeeeeEecC-----CCc-eEEeecCCCeEEEEEC
Q 023772 216 G--ELL--QEY-KGHICKSFKTDCCLTN-----SDA-HVTGGSEDGYIYFWDL 257 (277)
Q Consensus 216 ~--~~~--~~~-~~~~~~~~~~~~~~~~-----~~~-~l~sgs~d~~i~iwd~ 257 (277)
. +.. ... ..|+. ...+|-+ .|. +|++++-.|.+-+|++
T Consensus 197 ~~~r~~~~~s~~~~hNI----P~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVPSHQHSHNI----PNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccccccccccCC----CeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 2 111 111 12322 2233332 232 7888899999999888
No 472
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.29 E-value=43 Score=25.89 Aligned_cols=103 Identities=18% Similarity=0.117 Sum_probs=58.2
Q ss_pred CCCEEEEEeC--CCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEeecccCce
Q 023772 29 DGNYCLSCGK--DRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLI-SCGGDRQIFYWDVSTGRVIRKFRGHESEV 105 (277)
Q Consensus 29 ~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~s~d~~v~~wd~~~~~~~~~~~~h~~~v 105 (277)
+|.++.|.|. ...||+||+.+|+.+..-.-....+..--...-+.++. -.-.||....+|..+-+++..+.- .++=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y-~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY-EGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc-CCcc
Confidence 4567776543 34689999998876654432222222211222233332 234678888898887776655542 2333
Q ss_pred eEEEEecCCCEEEEEeCCCcEEEEeCccC
Q 023772 106 NAVKFNEYSSVVVSAGYDQSLRAWDCRSH 134 (277)
Q Consensus 106 ~~i~~~~~~~~l~s~~~d~~i~iwd~~~~ 134 (277)
+.++ .+++.++.++...++..-|+.+.
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHh
Confidence 4443 45556777666667777776543
No 473
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=72.24 E-value=51 Score=26.71 Aligned_cols=147 Identities=15% Similarity=0.130 Sum_probs=89.1
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceE
Q 023772 61 REVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQ 140 (277)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 140 (277)
..-..++-.+++..-+++...+.|--.|..+|+....-.+....-..|...|++..-++-+.. -|.-.|.++...++..
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 345677888888888888888888888988988766555555556678888888877765544 3544555444333222
Q ss_pred eecc-ccCcEEEEEecCCe--EEEeec---------CCcEEEEEccCCcccccCCCCCeeEEEEeCCCCEEEEEecCCeE
Q 023772 141 IIDS-FQDSVMSVCLTKTE--IIGGSV---------DGTVRTFDIRVGRELSDDLGQPVNCISMSNDGNCILASCLDSTL 208 (277)
Q Consensus 141 ~~~~-~~~~~~~~~~~~~~--~~~g~~---------d~~i~i~d~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 208 (277)
.-.. .........+++.. ..++.. .+.|++|+.. .+...+.|+..|+|..-.+.-.+..|
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP--------qG~gpyGi~atpdGsvwyaslagnai 212 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP--------QGGGPYGICATPDGSVWYASLAGNAI 212 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC--------CCCCCcceEECCCCcEEEEeccccce
Confidence 2111 12222333333322 222211 1234444433 23445678889999887777777788
Q ss_pred EEEECCCC
Q 023772 209 RLLDRSTG 216 (277)
Q Consensus 209 ~~wd~~~~ 216 (277)
-..|..++
T Consensus 213 aridp~~~ 220 (353)
T COG4257 213 ARIDPFAG 220 (353)
T ss_pred EEcccccC
Confidence 77777665
No 474
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.38 E-value=88 Score=29.11 Aligned_cols=177 Identities=12% Similarity=0.111 Sum_probs=86.1
Q ss_pred eCCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEe----ecccCceeEEEEec
Q 023772 37 GKDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKF----RGHESEVNAVKFNE 112 (277)
Q Consensus 37 s~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~----~~h~~~v~~i~~~~ 112 (277)
+.-..|+||+. +|..+..+....+++-.+.|+.+. .|+....||++.++++... .+..+ ......|..+.+..
T Consensus 61 ~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 61 SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEec
Confidence 33456888885 466666555444588899998664 5666789999999998532 22221 11223344444444
Q ss_pred CCCEEEEEeCCCcEEEE-eCccCCCcceEe--eccccCcEEEEEecCCeEEEeecCCcE----EEEEccCC--cccccCC
Q 023772 113 YSSVVVSAGYDQSLRAW-DCRSHSTEPIQI--IDSFQDSVMSVCLTKTEIIGGSVDGTV----RTFDIRVG--RELSDDL 183 (277)
Q Consensus 113 ~~~~l~s~~~d~~i~iw-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~d~~i----~i~d~~~~--~~~~~~~ 183 (277)
.|-.+++. +|.+.+- +........... ....+..+..+-. +.....+..+-.+ .++..... +......
T Consensus 138 ~GVavlt~--~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~-~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 138 NGVAVLTV--SGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQ-PHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred CceEEEec--CCcEEEEcCCCcchhhhCCCCCCccCCCcceeEec-CCCcceeEEeechhhhhcccceecccccccccCC
Confidence 55444443 3333332 221110000000 0001111222211 1111111111000 01111111 1111111
Q ss_pred -CCCeeEEEEeCCCCEEEEEecCCeEEEEECCCCceE
Q 023772 184 -GQPVNCISMSNDGNCILASCLDSTLRLLDRSTGELL 219 (277)
Q Consensus 184 -~~~v~~~~~s~~~~~l~~~~~d~~i~~wd~~~~~~~ 219 (277)
...+..+.+||+.++|+.=..+|.|.+-+....+..
T Consensus 215 ~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 215 PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 256778899999999999889998888776655443
No 475
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=70.29 E-value=60 Score=26.76 Aligned_cols=105 Identities=7% Similarity=0.067 Sum_probs=47.1
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCce---eEEeecccCce--eEEEEecCCCEEEEEeC-----CCcEEEEeCccCC
Q 023772 71 DNSKLISCGGD-----RQIFYWDVSTGRV---IRKFRGHESEV--NAVKFNEYSSVVVSAGY-----DQSLRAWDCRSHS 135 (277)
Q Consensus 71 ~~~~l~t~s~d-----~~v~~wd~~~~~~---~~~~~~h~~~v--~~i~~~~~~~~l~s~~~-----d~~i~iwd~~~~~ 135 (277)
++..++.|+.+ ..+..+|+.+.+- ...+..-..+. .++.. -++++.+.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566667654 3466667665442 11221111111 11222 24566666664 2357788876532
Q ss_pred CcceEeecc-ccCcEEEEEecCCeEEEeecCC----cEEEEEccCC
Q 023772 136 TEPIQIIDS-FQDSVMSVCLTKTEIIGGSVDG----TVRTFDIRVG 176 (277)
Q Consensus 136 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~d~----~i~i~d~~~~ 176 (277)
-..+..+.. .......+.......+.|+.++ .+.+||+.+.
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 111111111 1111122334444556666553 3457888764
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=69.08 E-value=38 Score=24.00 Aligned_cols=110 Identities=10% Similarity=0.170 Sum_probs=60.2
Q ss_pred EecCCCEEEEEeCCCcEEEEeCccCCC------cceEeeccccCcEEEEEe---c----CCeEEEeecCCcEEEEEccCC
Q 023772 110 FNEYSSVVVSAGYDQSLRAWDCRSHST------EPIQIIDSFQDSVMSVCL---T----KTEIIGGSVDGTVRTFDIRVG 176 (277)
Q Consensus 110 ~~~~~~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~~~~~~~~~~---~----~~~~~~g~~d~~i~i~d~~~~ 176 (277)
|......|+.++.-|+|.++++..... ..+.. -.....+.++.. . .+.|+.| ....+..||....
T Consensus 6 fDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~-LNin~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~~N 83 (136)
T PF14781_consen 6 FDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISF-LNINQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVENN 83 (136)
T ss_pred eCCCceeEEEEecCCEEEEECCCccccccccccCceeE-EECCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcccC
Confidence 444445677777888899998653211 11121 223344444432 2 1224444 4567888999877
Q ss_pred ccccc-CCCCCeeEEEEeC---CCCEEEEEecCCeEEEEECCCCceEEE
Q 023772 177 RELSD-DLGQPVNCISMSN---DGNCILASCLDSTLRLLDRSTGELLQE 221 (277)
Q Consensus 177 ~~~~~-~~~~~v~~~~~s~---~~~~l~~~~~d~~i~~wd~~~~~~~~~ 221 (277)
..+.. ....-++++.+-. ...-++..+.+..|+-||..-.+...+
T Consensus 84 ~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 65543 4456677776632 122344445566777777765444433
No 477
>PLN02193 nitrile-specifier protein
Probab=69.05 E-value=82 Score=27.78 Aligned_cols=189 Identities=9% Similarity=0.025 Sum_probs=83.1
Q ss_pred CCEEEEEeCC-------CcEEEEcCCCCeeEEEEeccCcc----EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc
Q 023772 30 GNYCLSCGKD-------RTIRLWNPHRGIHIKTYKSHGRE----VRDVHVTADNSKLISCGGD-----RQIFYWDVSTGR 93 (277)
Q Consensus 30 ~~~l~s~s~d-------~~v~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~t~s~d-----~~v~~wd~~~~~ 93 (277)
+.+.+.|+.+ ..+-+||+.+.+-...-.....+ .......-++..++.|+.+ ..+..+|+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4455556643 24667887776543211000001 1111222345556666654 357788887643
Q ss_pred --eeEEeecccCce--eEEEEecCCCEEEEEeCCC-----cEEEEeCccCCCcceEe---eccccCcEEEEEecCCeEEE
Q 023772 94 --VIRKFRGHESEV--NAVKFNEYSSVVVSAGYDQ-----SLRAWDCRSHSTEPIQI---IDSFQDSVMSVCLTKTEIIG 161 (277)
Q Consensus 94 --~~~~~~~h~~~v--~~i~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 161 (277)
.+........+. .++.. -++++.+.|+.++ .+..||+.+..-..+.. .................++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyvi 334 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVV 334 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEE
Confidence 111111001111 12222 2456667776543 35667765432111000 00001111222334445555
Q ss_pred eecC----CcEEEEEccCCc--ccccC--CC-CCeeEEEEeCCCCEEEEEecC--------------CeEEEEECCCCce
Q 023772 162 GSVD----GTVRTFDIRVGR--ELSDD--LG-QPVNCISMSNDGNCILASCLD--------------STLRLLDRSTGEL 218 (277)
Q Consensus 162 g~~d----~~i~i~d~~~~~--~~~~~--~~-~~v~~~~~s~~~~~l~~~~~d--------------~~i~~wd~~~~~~ 218 (277)
|+.+ ..+.+||+.+.+ .+... .. ......+..-+++.++.|+.+ ..+.+||..+.+.
T Consensus 335 GG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 335 YGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 5554 457889987643 11111 01 111111222256667777643 2478888887654
Q ss_pred E
Q 023772 219 L 219 (277)
Q Consensus 219 ~ 219 (277)
.
T Consensus 415 ~ 415 (470)
T PLN02193 415 E 415 (470)
T ss_pred E
Confidence 3
No 478
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=68.71 E-value=78 Score=27.44 Aligned_cols=143 Identities=10% Similarity=0.144 Sum_probs=81.3
Q ss_pred CCCEEEEEeCCCcEEEEcCCCCe-----eEEEEeccCccEEEEEEc---C-CCCEEEEEeCCCcEEEEECCC--Cc----
Q 023772 29 DGNYCLSCGKDRTIRLWNPHRGI-----HIKTYKSHGREVRDVHVT---A-DNSKLISCGGDRQIFYWDVST--GR---- 93 (277)
Q Consensus 29 ~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~v~~~~~~---~-~~~~l~t~s~d~~v~~wd~~~--~~---- 93 (277)
+...|+.||..|.+|||++..+. .+.+.+ -..||..++.- + .....++.-.-+++.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 45699999999999999985432 222222 23577777653 2 233344445566778887721 11
Q ss_pred ---eeEEeeccc--CceeEEEEecC-----CCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEee
Q 023772 94 ---VIRKFRGHE--SEVNAVKFNEY-----SSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGS 163 (277)
Q Consensus 94 ---~~~~~~~h~--~~v~~i~~~~~-----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 163 (277)
.+.....|. .....+.+-+. ..++..-+.||.+.+|+-+.........-...++ ...+....+.+++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg-Pl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG-PLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc-CeEEeecCCEEEEec
Confidence 122222232 22233444333 2467778999999999865422110000011222 344555667788888
Q ss_pred cCCcEEEEEc
Q 023772 164 VDGTVRTFDI 173 (277)
Q Consensus 164 ~d~~i~i~d~ 173 (277)
.+..+..|..
T Consensus 194 ss~~l~~Yky 203 (418)
T PF14727_consen 194 SSWTLECYKY 203 (418)
T ss_pred CceeEEEecH
Confidence 8888888875
No 479
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=68.60 E-value=30 Score=26.73 Aligned_cols=48 Identities=6% Similarity=0.120 Sum_probs=35.1
Q ss_pred CEEEEEeCCCcEEEEcCCC--CeeEEEEeccCccEEEEEEcCCCCEEEEEe
Q 023772 31 NYCLSCGKDRTIRLWNPHR--GIHIKTYKSHGREVRDVHVTADNSKLISCG 79 (277)
Q Consensus 31 ~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s 79 (277)
+.|+.+.....|.+|++.+ ...+.+|..- +.|..+.++..|++|+|--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEE
Confidence 3444435567899999873 3455666643 7899999999999999863
No 480
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=68.16 E-value=23 Score=28.06 Aligned_cols=89 Identities=11% Similarity=0.106 Sum_probs=45.7
Q ss_pred EEEEccCCcccccCCCCCeeE--EEEeCCCCEEEEEec---CCeEEEEECCC---CceEEEEec-cccceeeeeeEecCC
Q 023772 169 RTFDIRVGRELSDDLGQPVNC--ISMSNDGNCILASCL---DSTLRLLDRST---GELLQEYKG-HICKSFKTDCCLTNS 239 (277)
Q Consensus 169 ~i~d~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~~~---d~~i~~wd~~~---~~~~~~~~~-~~~~~~~~~~~~~~~ 239 (277)
.+||+.+.+.........+.| -.+-++|+++.+|+. ...+|+++... .....+... ......-.....-+|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 368887765332222222222 256789999988864 23588888654 111111111 111222222334578
Q ss_pred CceEEeecCCC-eEEEEEC
Q 023772 240 DAHVTGGSEDG-YIYFWDL 257 (277)
Q Consensus 240 ~~~l~sgs~d~-~i~iwd~ 257 (277)
|+.++.|+.+. +..+|.-
T Consensus 129 G~vlIvGG~~~~t~E~~P~ 147 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPP 147 (243)
T ss_pred CCEEEEeCcCCCcccccCC
Confidence 88877666553 3455554
No 481
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.13 E-value=11 Score=19.90 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCceEEeecCCCeEEEEECcC
Q 023772 239 SDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 239 ~~~~l~sgs~d~~i~iwd~~~ 259 (277)
.+..+..++.||.++..|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788889999999999864
No 482
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.34 E-value=31 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCeeEEEEeCCCCEEEEE-ecCCeEEEEECCC
Q 023772 185 QPVNCISMSNDGNCILAS-CLDSTLRLLDRST 215 (277)
Q Consensus 185 ~~v~~~~~s~~~~~l~~~-~~d~~i~~wd~~~ 215 (277)
...+.+.++|++++|..+ ...+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 346789999999887665 4567899988653
No 483
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.32 E-value=91 Score=27.30 Aligned_cols=130 Identities=6% Similarity=0.068 Sum_probs=69.5
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEcCC---CCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----
Q 023772 22 LAARFNGDGNYCLSCGKDRTIRLWNPH---RGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRV---- 94 (277)
Q Consensus 22 ~~~~~~~~~~~l~s~s~d~~v~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~---- 94 (277)
+.+-|+.-.+.|+ |-..|.+.-|-.. ...++..-....++|.++.|++|++.|+.--.|++|.+++....+.
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 3444444333333 3333455555422 1122333333457999999999999999989999999998743322
Q ss_pred eEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEec
Q 023772 95 IRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLT 155 (277)
Q Consensus 95 ~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (277)
..+.+..+..|.+..|.... -++--+..| +.+|.+... .........+...+..+.+.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~-e~A~i~~~G-~e~y~v~pe-krslRlVks~~~nvnWy~yc 162 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSST-EIAFITDQG-IEFYQVLPE-KRSLRLVKSHNLNVNWYMYC 162 (657)
T ss_pred HHHhccCcceeEEEEEecCe-eEEEEecCC-eEEEEEchh-hhhhhhhhhcccCccEEEEc
Confidence 22333334557777776653 333333333 666654321 11222334444455554444
No 484
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.59 E-value=79 Score=26.34 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=50.7
Q ss_pred eeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEee----ccccCcEEEEEecCC-----eEEEeec-------C--C
Q 023772 105 VNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQII----DSFQDSVMSVCLTKT-----EIIGGSV-------D--G 166 (277)
Q Consensus 105 v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~g~~-------d--~ 166 (277)
-++|+|.|+++++++ -..|.|++++........+... .........+.+++. .+..... . .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 467999999888776 5599999998322111112111 122344566676662 3332222 1 1
Q ss_pred cEEEEEccCC-------ccc----cc--CCCCCeeEEEEeCCCCEEEEEecCC
Q 023772 167 TVRTFDIRVG-------REL----SD--DLGQPVNCISMSNDGNCILASCLDS 206 (277)
Q Consensus 167 ~i~i~d~~~~-------~~~----~~--~~~~~v~~~~~s~~~~~l~~~~~d~ 206 (277)
.|.-|.+... +.+ .. ...+.-..|.|.|+|.++++.+..+
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 2333433322 111 11 2245677899999997666655433
No 485
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.22 E-value=53 Score=29.08 Aligned_cols=63 Identities=11% Similarity=0.141 Sum_probs=46.0
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEecCCCEEEEEeCCCcEEEEeCc
Q 023772 69 TADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCR 132 (277)
Q Consensus 69 ~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~ 132 (277)
...+.+|+.||..|-|++||--..+....+.+-...|..+....+|+.+++... ..+-+-|++
T Consensus 570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 345679999999999999996544434445566778888999999988765443 456666654
No 486
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=62.49 E-value=40 Score=21.93 Aligned_cols=51 Identities=20% Similarity=0.232 Sum_probs=27.6
Q ss_pred EecCCeEEEEECCCCceEEEEeccccceeeeeeEecCCCceEEee--cCCCeEEEE
Q 023772 202 SCLDSTLRLLDRSTGELLQEYKGHICKSFKTDCCLTNSDAHVTGG--SEDGYIYFW 255 (277)
Q Consensus 202 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~iw 255 (277)
+..+|.+--||..+++..--+.+- .+..-+++++|+.+++.+ ..-+..|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L---~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL---YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE---SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC---CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 345678888999887653333332 244556788998876543 233334444
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=62.04 E-value=1.1e+02 Score=26.80 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCEEEEEeCCCcEEEE-cCCCC-----eeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccC
Q 023772 30 GNYCLSCGKDRTIRLW-NPHRG-----IHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHES 103 (277)
Q Consensus 30 ~~~l~s~s~d~~v~iw-d~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~ 103 (277)
|.-++.++.||-|.-| |...+ ..++.++-...++..+.-..+.+-+++-+..|++.++.....+.+-. ...-.
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~ 358 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQ 358 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhc
Confidence 5567778899999888 43322 23444444444555444444455677888889999887655544322 11223
Q ss_pred ceeEEEEecCCCEEEEEeCCCcEEEEeCccCC
Q 023772 104 EVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHS 135 (277)
Q Consensus 104 ~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~ 135 (277)
...-++++|.+.++++- ..|.++++.+.+..
T Consensus 359 ~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 359 APQLVAMSPNQAYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred CcceeeeCcccchheee-cCCceEEEEecCCC
Confidence 45568899999888864 45779999887644
No 488
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=61.73 E-value=68 Score=24.25 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=36.2
Q ss_pred CeEEEEECCCCceEEEEecccc-ceeeeeeEecCCCce-EEee------cCCCeEEEEECcCccceeeeccC
Q 023772 206 STLRLLDRSTGELLQEYKGHIC-KSFKTDCCLTNSDAH-VTGG------SEDGYIYFWDLVDASVVAKFKAH 269 (277)
Q Consensus 206 ~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~sg------s~d~~i~iwd~~~~~~~~~~~~h 269 (277)
|.|+|.|+..++..+-.-+... ...+-...+-.|..+ ++.| +..|.++++++.+++.......+
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~~~ 159 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYEWK 159 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeeecc
Confidence 4688889877766432222110 111112222233333 3344 67889999999999887766653
No 489
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=61.72 E-value=1.2e+02 Score=26.94 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEeecccCc---eeEEEEecCC
Q 023772 38 KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTADNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESE---VNAVKFNEYS 114 (277)
Q Consensus 38 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~---v~~i~~~~~~ 114 (277)
......+.|. .|..+..+.........+...+++.+++..+ ..+..+|.. |+.+..+..-... =..+...|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 3445555553 3444433332211111266677877776554 788888875 5555444321111 1456777889
Q ss_pred CEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEEccCCcc-cc----------cCC
Q 023772 115 SVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRE-LS----------DDL 183 (277)
Q Consensus 115 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~-~~----------~~~ 183 (277)
++|+.+........ + .......+.+..+. + ....+..||+..--. .. ...
T Consensus 202 n~L~l~~~~~~~~~-~---------~~~~~~~D~Ivevd--~-------tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~ 262 (477)
T PF05935_consen 202 NLLILASETKYVDE-D---------KDVDTVEDVIVEVD--P-------TGEVVWEWDFFDHLDPYRDTVLKPYPYGDIS 262 (477)
T ss_dssp -EEEEEEETTEE-T-S----------EE---S-EEEEE---T-------TS-EEEEEEGGGTS-TT--TTGGT--SSSSS
T ss_pred CEEEEEeecccccC-C---------CCccEecCEEEEEC--C-------CCCEEEEEehHHhCCcccccccccccccccc
Confidence 88887764322211 0 00011112222222 1 123456788653210 00 000
Q ss_pred ----C---CCeeEEEEeC-CCCEEEEEecCCeEEEEECCCCceEEEEecc
Q 023772 184 ----G---QPVNCISMSN-DGNCILASCLDSTLRLLDRSTGELLQEYKGH 225 (277)
Q Consensus 184 ----~---~~v~~~~~s~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 225 (277)
. ..++++.+.+ ++.+|+++-.-..|-..|.++++....+..+
T Consensus 263 ~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 263 GSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp -SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred cCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 0 2589999999 4554455444558989998889887776654
No 490
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=60.96 E-value=21 Score=32.97 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=44.4
Q ss_pred CceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEecCCeEEEeecCCcEEEEE
Q 023772 103 SEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCLTKTEIIGGSVDGTVRTFD 172 (277)
Q Consensus 103 ~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i~d 172 (277)
..+.++.-+|.++-++.++.||.|++|+........+.. .+.+-..+.+....+++...|+...-|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~---~~~p~~nlv~tnhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE---EAKPKENLVFTNHGLVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh---hcCCccceeeeccceEEEeccchhheee
Confidence 345678888999999999999999999975432211111 1122233445566678888787777665
No 491
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=58.91 E-value=1.9e+02 Score=28.38 Aligned_cols=171 Identities=16% Similarity=0.234 Sum_probs=90.8
Q ss_pred cEEEEECCCCceeEEeecc----cCceeEEEEecCCCE-EEEEe------------CCCcEEEEeCccCCCcceEee--c
Q 023772 83 QIFYWDVSTGRVIRKFRGH----ESEVNAVKFNEYSSV-VVSAG------------YDQSLRAWDCRSHSTEPIQII--D 143 (277)
Q Consensus 83 ~v~~wd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~-l~s~~------------~d~~i~iwd~~~~~~~~~~~~--~ 143 (277)
.|++.|..+++.+..+.-. .-.+.++.|+..... +..++ .+|.++.|++-... +....+ .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g-~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG-DKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC-ceeeeeecc
Confidence 4888888877765544321 224555666544332 22222 23445555543221 122222 2
Q ss_pred cccCcEEEEEecCCeEEEeecCCcEEEEEccCCcccccCC----CCCeeEEEEeCCCCEEEEEecCCeEEE--EECCCCc
Q 023772 144 SFQDSVMSVCLTKTEIIGGSVDGTVRTFDIRVGRELSDDL----GQPVNCISMSNDGNCILASCLDSTLRL--LDRSTGE 217 (277)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~g~~d~~i~i~d~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~~--wd~~~~~ 217 (277)
.....+.+++.-...++ ++....+++||+...+.+.... ...|..+.+ .+..++.|...-.+.. |+...++
T Consensus 933 ~~~~~v~Ai~~f~~~~L-agvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen 933 EIPGPVGAICPFQGRVL-AGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred CCCccceEEeccCCEEE-EecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence 33456667666555444 4567799999998766544322 223444444 4556777765555554 5555454
Q ss_pred eEEEEeccccceeeeeeEecCCCceEEeecCCCeEEEEECcC
Q 023772 218 LLQEYKGHICKSFKTDCCLTNSDAHVTGGSEDGYIYFWDLVD 259 (277)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~iwd~~~ 259 (277)
++ .|.....+...+.+.+- |...+|.|..=|.+.+-.+..
T Consensus 1010 l~-~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1010 LI-VFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred EE-EEeCCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 44 44444334444544443 445577776667776665543
No 492
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=58.73 E-value=1.1e+02 Score=25.88 Aligned_cols=12 Identities=8% Similarity=0.315 Sum_probs=7.8
Q ss_pred cCCCEEEEEeCC
Q 023772 112 EYSSVVVSAGYD 123 (277)
Q Consensus 112 ~~~~~l~s~~~d 123 (277)
-++++.+.|+.+
T Consensus 138 ~~~~IYv~GG~~ 149 (376)
T PRK14131 138 HNGKAYITGGVN 149 (376)
T ss_pred eCCEEEEECCCC
Confidence 356777777754
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.55 E-value=1.1e+02 Score=25.50 Aligned_cols=59 Identities=19% Similarity=0.307 Sum_probs=41.5
Q ss_pred cEEEEEEeCCCCEEEEEeCC------CcEEEEcCCCCeeEEEEe---------------ccCccEEEEEEcCCCCEEEEE
Q 023772 20 AVLAARFNGDGNYCLSCGKD------RTIRLWNPHRGIHIKTYK---------------SHGREVRDVHVTADNSKLISC 78 (277)
Q Consensus 20 ~V~~~~~~~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~---------------~h~~~v~~~~~~~~~~~l~t~ 78 (277)
...++++.++|.++++.=.+ ..|+.++.. |+....+. ..+....+++++|+++.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 34578888888888886666 778888865 55544331 134567899999999977765
Q ss_pred e
Q 023772 79 G 79 (277)
Q Consensus 79 s 79 (277)
-
T Consensus 165 ~ 165 (326)
T PF13449_consen 165 M 165 (326)
T ss_pred E
Confidence 3
No 494
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=58.07 E-value=21 Score=17.34 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=11.8
Q ss_pred eeEEEEeCCCCEEEEEecCCeEEEE
Q 023772 187 VNCISMSNDGNCILASCLDSTLRLL 211 (277)
Q Consensus 187 v~~~~~s~~~~~l~~~~~d~~i~~w 211 (277)
|.+++..+ ++++.+..-+.+|+|
T Consensus 4 i~aia~g~--~~vavaTS~~~lRif 26 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEec
Confidence 44444433 255555555555555
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=57.82 E-value=1.1e+02 Score=25.46 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCEEEEEeCC-----------CcEEEEcCCCCeeEEEEeccCccEEEE-EE-cCCCCEEEEEeCC
Q 023772 29 DGNYCLSCGKD-----------RTIRLWNPHRGIHIKTYKSHGREVRDV-HV-TADNSKLISCGGD 81 (277)
Q Consensus 29 ~~~~l~s~s~d-----------~~v~iwd~~~~~~~~~~~~h~~~v~~~-~~-~~~~~~l~t~s~d 81 (277)
++++.+.||.+ ..+-.||+.+.+-...-.......... .. ..+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 45566666643 246677877765433211111111111 12 2456666777654
No 496
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=55.99 E-value=1.3e+02 Score=25.72 Aligned_cols=199 Identities=12% Similarity=0.193 Sum_probs=103.8
Q ss_pred EEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEeecccCceeEEEEec----CCCE--EEEEe-CC---CcEEEEeC
Q 023772 65 DVHVTA---DNSKLISCGGDRQIFYWDVSTGRVIRKFRGHESEVNAVKFNE----YSSV--VVSAG-YD---QSLRAWDC 131 (277)
Q Consensus 65 ~~~~~~---~~~~l~t~s~d~~v~~wd~~~~~~~~~~~~h~~~v~~i~~~~----~~~~--l~s~~-~d---~~i~iwd~ 131 (277)
++..+| ...+|+....++-+.+||+.. +.+..+. ..+.+.++.-. .++. |+.++ .+ .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 455554 446788888888999999964 4455553 23455455432 2222 33333 22 46999977
Q ss_pred ccCCCcceEeec-------cccCcEEEEEec--C----CeEEEeecCCcEEEEEccCC-c------cccc-CCCCCeeEE
Q 023772 132 RSHSTEPIQIID-------SFQDSVMSVCLT--K----TEIIGGSVDGTVRTFDIRVG-R------ELSD-DLGQPVNCI 190 (277)
Q Consensus 132 ~~~~~~~~~~~~-------~~~~~~~~~~~~--~----~~~~~g~~d~~i~i~d~~~~-~------~~~~-~~~~~v~~~ 190 (277)
..... .+..+. .....++.+++. + .+++....+|.+..|.+... . .++. .....+..+
T Consensus 135 d~~~g-~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 135 DPDTG-ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC 213 (381)
T ss_dssp ETTTT-EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred cCCCC-cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence 53221 122111 111224445542 2 13566778898888887521 1 1111 234578888
Q ss_pred EEeCCCCEEEEEecCCeEEEEECCC-----CceEEEEecc--ccceeeeeeEecCC--CceEEeecCCCeEEEEECcC-c
Q 023772 191 SMSNDGNCILASCLDSTLRLLDRST-----GELLQEYKGH--ICKSFKTDCCLTNS--DAHVTGGSEDGYIYFWDLVD-A 260 (277)
Q Consensus 191 ~~s~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~--~~~l~sgs~d~~i~iwd~~~-~ 260 (277)
..+....+|..+-+|.-|.-|+... +..+....+. ......+......+ +.+|+|.--+++..+|+... .
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 9999888999999999898888753 2233322221 11122222222233 33455555677899999875 3
Q ss_pred cceeeec
Q 023772 261 SVVAKFK 267 (277)
Q Consensus 261 ~~~~~~~ 267 (277)
..+..|.
T Consensus 294 ~~~g~f~ 300 (381)
T PF02333_consen 294 AYVGSFR 300 (381)
T ss_dssp -EEEEEE
T ss_pred cccceEE
Confidence 5555553
No 497
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=55.96 E-value=1.2e+02 Score=25.27 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=13.9
Q ss_pred CCCCEEEEEeCC-----------CcEEEEECCCC
Q 023772 70 ADNSKLISCGGD-----------RQIFYWDVSTG 92 (277)
Q Consensus 70 ~~~~~l~t~s~d-----------~~v~~wd~~~~ 92 (277)
.+++..+.|+.+ ..+..||..+.
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 356666777653 24667787654
No 498
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=53.94 E-value=1.9e+02 Score=26.88 Aligned_cols=155 Identities=10% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEcC---------CCCeeEEEEeccCccEEEEEEcCCCCEEEEEeC-CCc---E
Q 023772 18 EGAVLAARFNGDGNYCLSCGKDRTIRLWNP---------HRGIHIKTYKSHGREVRDVHVTADNSKLISCGG-DRQ---I 84 (277)
Q Consensus 18 ~~~V~~~~~~~~~~~l~s~s~d~~v~iwd~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-d~~---v 84 (277)
++.|-.+.|.++++.++..-..|.|.+||. .....-..--.+..-|..........++++.+. ++. .
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEEC-CCCceeEEee---cccCceeEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeec-cccCc---EEEEEecC
Q 023772 85 FYWDV-STGRVIRKFR---GHESEVNAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIID-SFQDS---VMSVCLTK 156 (277)
Q Consensus 85 ~~wd~-~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 156 (277)
|++.+ .....+..+. .+........|.-+...+.-= .+++|.+|++...+......+. ..... +.++.+-.
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred CeEEEeecCCcEEEEEc
Q 023772 157 TEIIGGSVDGTVRTFDI 173 (277)
Q Consensus 157 ~~~~~g~~d~~i~i~d~ 173 (277)
..=+.-+.+.+|.+.|+
T Consensus 288 ~nRvLLs~~nkIyLld~ 304 (670)
T PF10395_consen 288 PNRVLLSVNNKIYLLDL 304 (670)
T ss_pred CCeEEEEcCCEEEEEee
No 499
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=53.21 E-value=1.8e+02 Score=26.49 Aligned_cols=155 Identities=8% Similarity=0.100 Sum_probs=79.1
Q ss_pred cceeeccCCcEEEEEEeCCCCEEEEEe--CCCcEEEEcCCCCeeEEEEeccCccEEEEEEcCC----CCEEEEEeCCCcE
Q 023772 11 ANVLKGHEGAVLAARFNGDGNYCLSCG--KDRTIRLWNPHRGIHIKTYKSHGREVRDVHVTAD----NSKLISCGGDRQI 84 (277)
Q Consensus 11 ~~~l~~H~~~V~~~~~~~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~t~s~d~~v 84 (277)
.+.|..=-.||..++|..-...++|.- ..|.++.=|. +.+..| .-|..+.|.|- ...+++.-..+.|
T Consensus 12 lNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhV 84 (671)
T PF15390_consen 12 LNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHV 84 (671)
T ss_pred hHHHHhhhccccceEecCCCEEEEEeeeeeCCccccCCc---cEeecc----ceeeeeeecCcccCCCCceEEEeccceE
Confidence 333443345788999986555666642 3344443332 234444 46788999875 3468888889999
Q ss_pred EEEECC-----CCceeEEeecc---cCce--eEEEEecCCCEEEEEeCCCcEEEEeCccCCCcceEeeccccCcEEEEEe
Q 023772 85 FYWDVS-----TGRVIRKFRGH---ESEV--NAVKFNEYSSVVVSAGYDQSLRAWDCRSHSTEPIQIIDSFQDSVMSVCL 154 (277)
Q Consensus 85 ~~wd~~-----~~~~~~~~~~h---~~~v--~~i~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 154 (277)
.+|.+. .++.+.+...+ .-+| .++-|+|....++.=.....-.+++.+.... ++..=-...+-+.+.+|
T Consensus 85 tVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~IhCACW 163 (671)
T PF15390_consen 85 TVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLIHCACW 163 (671)
T ss_pred EEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceEEEEEe
Confidence 999985 23333222211 1122 3466777766655433333333444443221 12111123344555555
Q ss_pred c--CCeEEEe-ecCCcEEEEEc
Q 023772 155 T--KTEIIGG-SVDGTVRTFDI 173 (277)
Q Consensus 155 ~--~~~~~~g-~~d~~i~i~d~ 173 (277)
. ++.++++ +..=.-.+||-
T Consensus 164 T~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 164 TKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCcCCEEEEEeCCeEEEEEecC
Confidence 4 4444433 22233456663
No 500
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=52.81 E-value=81 Score=22.41 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=47.2
Q ss_pred EEEEEeCCCcEEEEcCCCCeeEEEEeccC-ccEEEE-----------EEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 023772 32 YCLSCGKDRTIRLWNPHRGIHIKTYKSHG-REVRDV-----------HVTADNSKLISCGGDRQIFYWDVSTGRVI 95 (277)
Q Consensus 32 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h~-~~v~~~-----------~~~~~~~~l~t~s~d~~v~~wd~~~~~~~ 95 (277)
+.+....||.+.|++..+++.+..+.... +-+..+ ....+..+-++--.||.+.+-|..|+..+
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i 118 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSI 118 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEE
Confidence 44566789999999999999998885432 333211 24456678888889999999999988765
Done!