BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023774
         (277 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9BEG8|CHLN_PROM4 Light-independent protochlorophyllide reductase subunit N
           OS=Prochlorococcus marinus (strain MIT 9211) GN=chlN
           PE=3 SV=1
          Length = 418

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 19/74 (25%)

Query: 181 EILPRPAPAG-----------------DQSSISSTEEPVMKTSKKIYDKKFSELSGNDIF 223
           EILP P P G                 DQS ++ST EP++  ++K       +L+G  +F
Sbjct: 230 EILPAPFPLGVEGSRLWIEAAAKSFNVDQSLVTSTLEPLILRARKALKPYIEKLTGKKLF 289

Query: 224 KGDVPPSSAEKPLS 237
              +P S  E PL+
Sbjct: 290 L--LPESQLEIPLA 301


>sp|A8ER74|GCP_ARCB4 Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
           OS=Arcobacter butzleri (strain RM4018) GN=gcp PE=3 SV=1
          Length = 333

 Score = 31.2 bits (69), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 191 DQSSISSTEEPVMKTSKKIYDKKFSELSGNDIFKGDVPPSSA 232
           D SSI+ TE   +KT+K IY KK S+   + I+ G VP  +A
Sbjct: 10  DDSSIAITE---IKTNKLIYHKKISQELQHSIYGGVVPELAA 48


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.305    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,043,535
Number of Sequences: 539616
Number of extensions: 4674749
Number of successful extensions: 10402
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 116
Number of HSP's that attempted gapping in prelim test: 10331
Number of HSP's gapped (non-prelim): 175
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 60 (27.7 bits)