Query 023774
Match_columns 277
No_of_seqs 95 out of 97
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 06:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13266 DUF4057: Protein of u 100.0 2E-114 4E-119 797.5 19.4 269 3-275 1-302 (302)
2 PF13266 DUF4057: Protein of u 100.0 1.1E-43 2.4E-48 328.2 7.8 162 35-196 102-302 (302)
3 PF10313 DUF2415: Uncharacteri 15.8 50 0.0011 23.5 0.0 10 15-24 15-24 (43)
4 PRK14463 ribosomal RNA large s 12.9 1E+02 0.0023 29.9 1.3 30 240-273 318-348 (349)
5 PF07623 PEGSRP: Protein of un 9.0 1.4E+02 0.003 19.5 0.5 8 264-271 4-11 (27)
6 COG2042 Uncharacterized conser 8.7 2E+02 0.0044 26.2 1.6 44 197-240 19-64 (179)
7 KOG0374 Serine/threonine speci 8.4 2.3E+02 0.0049 27.7 1.8 61 14-87 205-274 (331)
8 COG4029 Uncharacterized protei 7.4 1.7E+02 0.0037 25.7 0.5 23 200-227 49-71 (142)
9 PF07908 D-aminoacyl_C: D-amin 7.1 2.7E+02 0.0058 19.6 1.3 22 35-59 11-32 (48)
10 PHA01082 putative transcriptio 6.9 1.7E+02 0.0037 25.5 0.2 17 210-226 11-27 (133)
No 1
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=1.8e-114 Score=797.54 Aligned_cols=269 Identities=80% Similarity=1.198 Sum_probs=260.0
Q ss_pred CCCCCCCCCCCccccccccCCCCCCCC----CCCCCCCCCCCCCCCCCcceEEeCcccchHHHHhhhccCCCCccccccc
Q 023774 3 RSTPVRKPHTSTADLLVWSETPPSDSP----AQASSTRSSVRGQPSDGISKVVFGGQVTDEEVESLNRRKPCSGYKMKEM 78 (277)
Q Consensus 3 ~~~p~r~~h~st~dll~w~~~~~~~~~----~~~~~~R~~~~~Qp~~giS~i~Fg~qvT~E~~e~l~krK~~S~aK~KEl 78 (277)
|+||||+|||||||||+|+|+|+++++ ++++++|+ |||++|||+|+||+|||+||+|+|+|||+||++|||||
T Consensus 1 r~~pvR~~HtsTadLltWse~~~~~~~~~~~~~~~a~Rs---hQPs~giskv~fGgQvT~EEAEsL~KRKpCS~~K~KEm 77 (302)
T PF13266_consen 1 RATPVRKPHTSTADLLTWSETPPPDSPAASSTSRPARRS---HQPSDGISKVVFGGQVTEEEAESLNKRKPCSGYKMKEM 77 (302)
T ss_pred CCCCccCCCcCchhhccccCCCCcccccccCCCCCCCCC---CCCcccccccccCCcCCHHHHHHHhccCcCccccceec
Confidence 799999999999999999999987666 46899998 99999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCCcCCCCCCCCCCCCCCccceeecccccccceeecCCCCCCCCCCCCchHHHhhhccCCCccchhHHHH
Q 023774 79 TGSGIFAAGAENDESESGSANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKKPTTLPEVAKQRELSGTLESESEAKL 158 (277)
Q Consensus 79 sGs~IFa~~~e~~~~e~~~~~~~p~~~~t~~~~~~~~~g~S~IsFgee~~vspkKp~s~~evAkqrelsgt~~de~d~k~ 158 (277)
+|||||++++++++++.+.+++ .+|++++|+|||.++|+|||||++|++|+||||++++||||||||+||+++++|.++
T Consensus 78 TGSGIF~~~~e~~~se~~san~-~~~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~ 156 (302)
T PF13266_consen 78 TGSGIFSANGEDDASESGSANP-TPNRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKM 156 (302)
T ss_pred ccccccccCCCCcccccccCCC-CccccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHH
Confidence 9999999999999999887774 357999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhcCCCCCCCCCCCCCCC-----------------------------CCCCCCCCCccCCCcchhhhhhh
Q 023774 159 KKQISDAKSKELSGHDIFAPPPEILPRP-----------------------------APAGDQSSISSTEEPVMKTSKKI 209 (277)
Q Consensus 159 ~KqlS~AK~KELSGsDIFA~~~~~~~~r-----------------------------~p~GG~SsI~fg~~~~~kt~Kki 209 (277)
+||+|+||+|||||||||++|+++.||+ +|+||.|+|.|++|+|+||+|||
T Consensus 157 kkq~S~AK~KELSGhdIFapp~~~~pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Ktakki 236 (302)
T PF13266_consen 157 KKQISNAKSKELSGHDIFAPPPEIKPRSLTARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKTAKKI 236 (302)
T ss_pred HhhhhhhhhhhcccCcccCCCccCCCCcchhhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhhhhhh
Confidence 9999999999999999999999999884 89999999999999999999999
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCCCCChhhhhhhccCCCcCCCCCcCccccCCCcccCCCCCCCcc
Q 023774 210 YDKKFSELSGNDIFKGDVPPSSAEKPLSVAKLREMSGSNIFADGKVESRDYLGGVRKPPGGESSIA 275 (277)
Q Consensus 210 ~~~K~~ElsGn~IFk~d~~~~~~ek~ls~Akl~emsG~dIFadgk~~~rd~~gg~rkppgg~ssia 275 (277)
|+|||+||+|||||++|.+++++||+||+||||||+|+|||||||+++|||+|||||||||+||||
T Consensus 237 ~~~K~aeltGN~IFk~d~p~~saek~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkPPGG~SSIa 302 (302)
T PF13266_consen 237 SNQKFAELTGNNIFKGDVPPASAEKPLSSAKLREMSGSDIFADGKAESRDYLGGVRKPPGGESSIA 302 (302)
T ss_pred hhhhhhhcccCcccCCCCCCCCcccchhhhhHhhcccccccccCCcccchhcCCccCCCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF13266 DUF4057: Protein of unknown function (DUF4057)
Probab=100.00 E-value=1.1e-43 Score=328.24 Aligned_cols=162 Identities=30% Similarity=0.358 Sum_probs=146.9
Q ss_pred CCCCCC-CC-CCCCcceEEeCccc---------------------chHHHHhhhccCCCCccccccccCccccCCCCCCC
Q 023774 35 TRSSVR-GQ-PSDGISKVVFGGQV---------------------TDEEVESLNRRKPCSGYKMKEMTGSGIFAAGAEND 91 (277)
Q Consensus 35 ~R~~~~-~Q-p~~giS~i~Fg~qv---------------------T~E~~e~l~krK~~S~aK~KElsGs~IFa~~~e~~ 91 (277)
.|++|| || ..+|||||+||++. |.|.+.+++.+||+|+||+|||+|||||++++++.
T Consensus 102 ~rt~vr~yQq~~~giSqISF~~eesvsPKKpts~~EVAKQRELSGTlese~D~k~kkq~S~AK~KELSGhdIFapp~~~~ 181 (302)
T PF13266_consen 102 NRTGVRMYQQAINGISQISFSEEESVSPKKPTSLPEVAKQRELSGTLESEADSKMKKQISNAKSKELSGHDIFAPPPEIK 181 (302)
T ss_pred cccccceecccccccceeeecCCCCcCCCCccchHHHHHHhhhcCccccchhhHHHhhhhhhhhhhcccCcccCCCccCC
Confidence 355555 88 55899999999887 67777788888999999999999999999999999
Q ss_pred cCCC---------C--CCCCCCCCCCccceeecccccccceeecCCCCCCCCCCCCchHHHhhhccCCCccchhHHHHhh
Q 023774 92 ESES---------G--SANPTPNNKTGLRMYQQAIAGISHISFGEEDSISPKKPTTLPEVAKQRELSGTLESESEAKLKK 160 (277)
Q Consensus 92 ~~e~---------~--~~~~~p~~~~t~~~~~~~~~g~S~IsFgee~~vspkKp~s~~evAkqrelsgt~~de~d~k~~K 160 (277)
++.. + .+.+.|++.++++++.++++|.|+|.|++|++|++.|+|+.++||+|+||+||++|.++.+++|
T Consensus 182 pr~~~~r~le~k~~~~~~e~~~~~~~ts~~~~n~a~~~s~~~~~~~~~~Ktakki~~~K~aeltGN~IFk~d~p~~saek 261 (302)
T PF13266_consen 182 PRSLTARSLELKENKDRGEPAPRNVRTSVKVSNPAGGQSNIEFGEDSVVKTAKKISNQKFAELTGNNIFKGDVPPASAEK 261 (302)
T ss_pred CCcchhhhhhhcccccccCCCCCcccccccccCCcCcccccccccCcchhhhhhhhhhhhhhcccCcccCCCCCCCCccc
Confidence 9851 1 2334688999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCC-----CCCCCCCCCCCCCCCCCCc
Q 023774 161 QISDAKSKELSGHDIFA-----PPPEILPRPAPAGDQSSIS 196 (277)
Q Consensus 161 qlS~AK~KELSGsDIFA-----~~~~~~~~r~p~GG~SsI~ 196 (277)
+||.||+|||+|||||| .++|++++|+||||+|||+
T Consensus 262 ~lS~AKlrEmsGsdIFaDgk~~~rd~~gg~rkPPGG~SSIa 302 (302)
T PF13266_consen 262 PLSSAKLREMSGSDIFADGKAESRDYLGGVRKPPGGESSIA 302 (302)
T ss_pred chhhhhHhhcccccccccCCcccchhcCCccCCCCCCCcCC
Confidence 99999999999999999 8999999999999999996
No 3
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=15.85 E-value=50 Score=23.46 Aligned_cols=10 Identities=50% Similarity=1.029 Sum_probs=8.1
Q ss_pred cccccccCCC
Q 023774 15 ADLLVWSETP 24 (277)
Q Consensus 15 ~dll~w~~~~ 24 (277)
-|||.|+|..
T Consensus 15 ~DLL~~~E~~ 24 (43)
T PF10313_consen 15 NDLLAWAEHQ 24 (43)
T ss_pred ccEEEEEccC
Confidence 3999999853
No 4
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=12.91 E-value=1e+02 Score=29.94 Aligned_cols=30 Identities=40% Similarity=0.599 Sum_probs=20.5
Q ss_pred hhhhccCCCcCCC-CCcCccccCCCcccCCCCCCC
Q 023774 240 KLREMSGSNIFAD-GKVESRDYLGGVRKPPGGESS 273 (277)
Q Consensus 240 kl~emsG~dIFad-gk~~~rd~~gg~rkppgg~ss 273 (277)
.+|.=-|.||.|- |.... --+|-||||||-
T Consensus 318 ~vR~~~G~di~aaCGqL~~----~~~~~~~~~~~~ 348 (349)
T PRK14463 318 ITRSSRGSDISAACGQLKG----KLDKAPPGGESC 348 (349)
T ss_pred EEeCCCCcchhhccCcccc----cccCCCCCCCCC
Confidence 3455578888875 54432 257999999983
No 5
>PF07623 PEGSRP: Protein of unknown function (DUF1584); InterPro: IPR011477 This sequence motif is highly conserved in several short hypothetical proteins from Rhodopirellula baltica. It is also associated with IPR011476 from INTERPRO in Q7UJJ9 from SWISSPROT.
Probab=9.01 E-value=1.4e+02 Score=19.50 Aligned_cols=8 Identities=75% Similarity=1.244 Sum_probs=5.6
Q ss_pred cccCCCCC
Q 023774 264 VRKPPGGE 271 (277)
Q Consensus 264 ~rkppgg~ 271 (277)
-|||||-+
T Consensus 4 ~RkppG~~ 11 (27)
T PF07623_consen 4 WRKPPGEE 11 (27)
T ss_pred cccCCCCC
Confidence 48898853
No 6
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=8.75 E-value=2e+02 Score=26.23 Aligned_cols=44 Identities=32% Similarity=0.280 Sum_probs=31.3
Q ss_pred cCC-CcchhhhhhhhhhhhhcccCC-CCCCCCCCCCCCCCCChhhh
Q 023774 197 STE-EPVMKTSKKIYDKKFSELSGN-DIFKGDVPPSSAEKPLSVAK 240 (277)
Q Consensus 197 fg~-~~~~kt~Kki~~~K~~ElsGn-~IFk~d~~~~~~ek~ls~Ak 240 (277)
|++ ||-.+|+||+....+++++-. .-|-+=.-...+|+.||.|-
T Consensus 19 ~~qcDPKkCT~~KL~R~g~a~~~r~~~~~~~vvL~P~ae~~lSp~D 64 (179)
T COG2042 19 AGQCDPKKCTGKKLERFGLARLLRVGGKFPGVVLTPFAEKALSPAD 64 (179)
T ss_pred cCCCChhhhhHHHHHhcchhhhhcccCccceeEECCCcccccChhh
Confidence 444 888899999999888888743 33443334567899999653
No 7
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=8.35 E-value=2.3e+02 Score=27.73 Aligned_cols=61 Identities=26% Similarity=0.430 Sum_probs=34.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCCCCCC-CcceEEeCcccchHHHHhhhcc-----CCCCccccccccCc---ccc
Q 023774 14 TADLLVWSETPPSDSPAQASSTRSSVRGQPSD-GISKVVFGGQVTDEEVESLNRR-----KPCSGYKMKEMTGS---GIF 84 (277)
Q Consensus 14 t~dll~w~~~~~~~~~~~~~~~R~~~~~Qp~~-giS~i~Fg~qvT~E~~e~l~kr-----K~~S~aK~KElsGs---~IF 84 (277)
-.||| |+..-.. ... +.+.+ |+| ++||.++-.+.-..++.. .|+......=+.+- -||
T Consensus 205 l~DLl-Wsdp~~~--------~~g---~~~n~Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~lvTIF 271 (331)
T KOG0374|consen 205 LCDLL-WSDPDDD--------VPG---WEENDRGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKLVTIF 271 (331)
T ss_pred eeeee-ecCCCCC--------CCC---cccCCCcee-eEecHHHHHHHHHHhCcceEEEcCccccccceEecCceEEEEe
Confidence 45787 9873221 222 33333 889 999999877654444432 45555555444443 278
Q ss_pred CCC
Q 023774 85 AAG 87 (277)
Q Consensus 85 a~~ 87 (277)
+++
T Consensus 272 SAP 274 (331)
T KOG0374|consen 272 SAP 274 (331)
T ss_pred cCc
Confidence 654
No 8
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=7.45 E-value=1.7e+02 Score=25.66 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=16.8
Q ss_pred CcchhhhhhhhhhhhhcccCCCCCCCCC
Q 023774 200 EPVMKTSKKIYDKKFSELSGNDIFKGDV 227 (277)
Q Consensus 200 ~~~~kt~Kki~~~K~~ElsGn~IFk~d~ 227 (277)
|-|.+.+ +++++|-||+||..|.
T Consensus 49 d~v~klv-----eriR~~d~~~IF~KdR 71 (142)
T COG4029 49 DEVRKLV-----ERIRELDGNAIFSKDR 71 (142)
T ss_pred HHHHHHH-----HHHHHhccCceeeccc
Confidence 4444544 5678999999998875
No 9
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=7.08 E-value=2.7e+02 Score=19.60 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCCcceEEeCcccchH
Q 023774 35 TRSSVRGQPSDGISKVVFGGQVTDE 59 (277)
Q Consensus 35 ~R~~~~~Qp~~giS~i~Fg~qvT~E 59 (277)
.++ +|++.||..|.-.|++.-+
T Consensus 11 ~~p---~~~~~GI~~V~VNG~~vv~ 32 (48)
T PF07908_consen 11 EDP---NQPAEGIDYVFVNGQIVVE 32 (48)
T ss_dssp SST---T---BSEEEEEETTEEEEC
T ss_pred ccc---cccCCCEEEEEECCEEEEE
Confidence 477 8999999999999988654
No 10
>PHA01082 putative transcription regulator
Probab=6.93 E-value=1.7e+02 Score=25.47 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.9
Q ss_pred hhhhhhcccCCCCCCCC
Q 023774 210 YDKKFSELSGNDIFKGD 226 (277)
Q Consensus 210 ~~~K~~ElsGn~IFk~d 226 (277)
..-|..|||+|.||-.-
T Consensus 11 ~~m~~~emtkNyiFRef 27 (133)
T PHA01082 11 LSMNRSEMTKNFVFREF 27 (133)
T ss_pred hhhhHhhhhcceehhhh
Confidence 45788999999999753
Done!