Query 023774
Match_columns 277
No_of_seqs 95 out of 97
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 12:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bn5_B U1 small nuclear ribonu 12.8 1.2E+02 0.0041 18.5 2.0 14 172-185 6-20 (26)
2 2rfp_A Putative NTP pyrophosph 9.8 1.6E+02 0.0054 25.4 2.5 22 248-269 130-151 (171)
3 1xf5_L Protein L, monoclonal a 8.7 46 0.0016 25.1 -1.1 18 245-262 22-39 (80)
4 1hz6_A Protein L; four strande 7.7 61 0.0021 24.0 -0.8 17 246-262 16-32 (72)
5 2ptl_A Protein L; binding prot 7.5 70 0.0024 24.0 -0.6 19 244-262 20-38 (78)
6 2e2s_A Agelenin; cystine knot, 7.4 1.1E+02 0.0039 20.1 0.5 12 68-79 17-28 (36)
7 3nl9_A Putative NTP pyrophosph 7.2 2.3E+02 0.008 23.8 2.5 21 249-269 131-151 (171)
8 3d8l_A ORF12; lactococcal phag 6.2 79 0.0027 24.1 -0.9 18 160-177 3-21 (91)
9 2ln4_A Coprisin; antimicrobial 6.2 1.5E+02 0.0051 20.4 0.6 9 14-22 2-10 (44)
10 1ica_A Insect defensin A; anti 6.2 1.4E+02 0.0048 20.0 0.5 7 14-20 2-8 (40)
No 1
>2bn5_B U1 small nuclear ribonucleoprotein 70 kDa; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster}
Probab=12.78 E-value=1.2e+02 Score=18.51 Aligned_cols=14 Identities=57% Similarity=1.208 Sum_probs=9.8
Q ss_pred CCCCCC-CCCCCCCC
Q 023774 172 GHDIFA-PPPEILPR 185 (277)
Q Consensus 172 GsDIFA-~~~~~~~~ 185 (277)
-||.|. +|+.+.+|
T Consensus 6 hhnmfsvppppi~gr 20 (26)
T 2bn5_B 6 HHNMFSVPPPPILGR 20 (26)
T ss_dssp CCCCCSCCCCSCCCC
T ss_pred cCceecCCCCCcccC
Confidence 379999 66666665
No 2
>2rfp_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.74A {Exiguobacterium sibiricum} PDB: 3mqu_A 3nl9_A
Probab=9.79 E-value=1.6e+02 Score=25.36 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=18.9
Q ss_pred CcCCCCCcCccccCCCcccCCC
Q 023774 248 NIFADGKVESRDYLGGVRKPPG 269 (277)
Q Consensus 248 dIFadgk~~~rd~~gg~rkppg 269 (277)
-+|.|||+-.|..-|=|-||||
T Consensus 130 Kl~~dGkp~~r~~dgKvlK~~~ 151 (171)
T 2rfp_A 130 KLGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp TCCTTSSCCBCTTTCCBCCCTT
T ss_pred hcCCCCCeeecCCCCceeCCCC
Confidence 4789999998887888999987
No 3
>1xf5_L Protein L, monoclonal antibody 19D9D6 light chain; crystal packing, FAB, peptide complex, immune SYS; 2.60A {Finegoldia magna} PDB: 1xct_L 1xcq_L
Probab=8.74 E-value=46 Score=25.10 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=13.2
Q ss_pred cCCCcCCCCCcCccccCC
Q 023774 245 SGSNIFADGKVESRDYLG 262 (277)
Q Consensus 245 sG~dIFadgk~~~rd~~g 262 (277)
--+-||||||-+.-.+-|
T Consensus 22 k~nli~adgktqtaefkg 39 (80)
T 1xf5_L 22 KVNLIFADGKIQTAEFKG 39 (80)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEEEecCceEeeeecC
Confidence 346799999988766554
No 4
>1hz6_A Protein L; four stranded beta-sheet with central alpha helix, binds KAP chain of immunoglobulins, protein binding; 1.70A {Finegoldia magna} SCOP: d.15.7.1 PDB: 1hz5_A 1k53_A 1k51_A 1k52_A 1jml_A 1k50_A 2jzp_A 2kac_A 1kh0_A 1ymh_E 1mhh_E* 1hez_E 1ynt_E
Probab=7.68 E-value=61 Score=24.01 Aligned_cols=17 Identities=29% Similarity=0.698 Sum_probs=12.6
Q ss_pred CCCcCCCCCcCccccCC
Q 023774 246 GSNIFADGKVESRDYLG 262 (277)
Q Consensus 246 G~dIFadgk~~~rd~~g 262 (277)
-+-|||||+-+.-.+-|
T Consensus 16 anlifadg~tqtaefkg 32 (72)
T 1hz6_A 16 ANLIFANGSTQTAEFKG 32 (72)
T ss_dssp EEEECTTSCEEEEEEEE
T ss_pred EEEEEecCceeeeeeee
Confidence 45699999988766554
No 5
>2ptl_A Protein L; binding protein(immunoglobulin L chain); NMR {Finegoldia magna} SCOP: d.15.7.1
Probab=7.51 E-value=70 Score=24.01 Aligned_cols=19 Identities=26% Similarity=0.670 Sum_probs=13.8
Q ss_pred ccCCCcCCCCCcCccccCC
Q 023774 244 MSGSNIFADGKVESRDYLG 262 (277)
Q Consensus 244 msG~dIFadgk~~~rd~~g 262 (277)
|--+-|||||+-+.-.+-|
T Consensus 20 ikanli~adg~tqtaefkg 38 (78)
T 2ptl_A 20 IKANLIFANGSTQTAEFKG 38 (78)
T ss_dssp EEEEEECSSSCCEEEEEEE
T ss_pred EEEEEEEccCceeeeeecC
Confidence 3456799999988766654
No 6
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=7.38 E-value=1.1e+02 Score=20.12 Aligned_cols=12 Identities=50% Similarity=0.924 Sum_probs=10.2
Q ss_pred CCCCcccccccc
Q 023774 68 KPCSGYKMKEMT 79 (277)
Q Consensus 68 K~~S~aK~KEls 79 (277)
+=||+-|+|||+
T Consensus 17 rCCsgl~CKeL~ 28 (36)
T 2e2s_A 17 RCCSGLKCKELS 28 (36)
T ss_dssp CBCTTCCEEEEE
T ss_pred cccCCCceeeee
Confidence 568999999986
No 7
>3nl9_A Putative NTP pyrophosphohydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; 1.78A {Exiguobacterium sibiricum 255-15}
Probab=7.24 E-value=2.3e+02 Score=23.84 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=17.2
Q ss_pred cCCCCCcCccccCCCcccCCC
Q 023774 249 IFADGKVESRDYLGGVRKPPG 269 (277)
Q Consensus 249 IFadgk~~~rd~~gg~rkppg 269 (277)
+|.|||+-.|+.=|=|=|||+
T Consensus 131 l~~dgk~i~~~~dgKvlK~~~ 151 (171)
T 3nl9_A 131 LGPDGQPIFRESDQKVMKPDG 151 (171)
T ss_dssp CCTTSSCCBCTTTTCBCCCTT
T ss_pred cCCCCCeeeCCCCCcccCCCC
Confidence 578999988877788889886
No 8
>3d8l_A ORF12; lactococcal phage P2, viral protein; 2.90A {Lactococcus phage SK1}
Probab=6.22 E-value=79 Score=24.13 Aligned_cols=18 Identities=50% Similarity=0.754 Sum_probs=14.0
Q ss_pred hhhhhh-hhhhhcCCCCCC
Q 023774 160 KQISDA-KSKELSGHDIFA 177 (277)
Q Consensus 160 KqlS~A-K~KELSGsDIFA 177 (277)
||+|.| |+|-+.|.|+|-
T Consensus 3 kqlstarkfkmitgkdlfq 21 (91)
T 3d8l_A 3 KQLSTARKFKMITGKDLFQ 21 (91)
T ss_dssp CCCCHHHHHHHHHSSCHHH
T ss_pred chhhhhhhhhhhccHHHHH
Confidence 566665 788889999986
No 9
>2ln4_A Coprisin; antimicrobial protein, defensin-like peptide; NMR {Copris tripartitus}
Probab=6.21 E-value=1.5e+02 Score=20.41 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=6.8
Q ss_pred ccccccccC
Q 023774 14 TADLLVWSE 22 (277)
Q Consensus 14 t~dll~w~~ 22 (277)
|-|||+|.-
T Consensus 2 tCDlLs~~~ 10 (44)
T 2ln4_A 2 TCDVLSFEA 10 (44)
T ss_dssp CSCCCCCCC
T ss_pred eeeeecccc
Confidence 679999754
No 10
>1ica_A Insect defensin A; antibacterial protein; NMR {Protophormia terraenovae} SCOP: g.3.7.4 PDB: 1l4v_A 2lld_A 2ny8_X
Probab=6.18 E-value=1.4e+02 Score=20.04 Aligned_cols=7 Identities=57% Similarity=0.510 Sum_probs=5.3
Q ss_pred ccccccc
Q 023774 14 TADLLVW 20 (277)
Q Consensus 14 t~dll~w 20 (277)
|-|||+|
T Consensus 2 tCdlls~ 8 (40)
T 1ica_A 2 TCDLLSG 8 (40)
T ss_dssp CCSCSST
T ss_pred eEEeecc
Confidence 6688876
Done!