Query 023776
Match_columns 277
No_of_seqs 216 out of 1640
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 06:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02199 shikimate kinase 100.0 8.2E-38 1.8E-42 284.6 10.3 197 70-267 80-293 (303)
2 COG0703 AroK Shikimate kinase 100.0 4.9E-34 1.1E-38 241.4 11.1 158 93-264 2-170 (172)
3 PRK13948 shikimate kinase; Pro 100.0 1.1E-30 2.4E-35 224.7 11.5 161 91-264 8-177 (182)
4 PRK00625 shikimate kinase; Pro 99.9 7.3E-28 1.6E-32 205.7 10.0 160 94-260 1-171 (173)
5 PRK13949 shikimate kinase; Pro 99.9 8.8E-28 1.9E-32 204.3 10.4 153 94-259 2-168 (169)
6 PRK14021 bifunctional shikimat 99.9 1.9E-27 4.1E-32 235.2 10.8 158 92-262 5-176 (542)
7 PRK05057 aroK shikimate kinase 99.9 5.1E-27 1.1E-31 200.0 11.3 158 92-262 3-171 (172)
8 PRK13946 shikimate kinase; Pro 99.9 7.9E-27 1.7E-31 200.6 11.6 164 89-265 6-179 (184)
9 PF01202 SKI: Shikimate kinase 99.9 4.8E-27 1E-31 197.2 7.6 147 102-261 1-158 (158)
10 PRK13947 shikimate kinase; Pro 99.9 7.1E-26 1.5E-30 191.1 11.4 155 94-261 2-167 (171)
11 PRK00131 aroK shikimate kinase 99.9 1.2E-24 2.5E-29 182.9 11.1 162 91-265 2-174 (175)
12 PRK03731 aroL shikimate kinase 99.9 1.7E-23 3.6E-28 176.9 10.5 153 94-261 3-169 (171)
13 PRK08154 anaerobic benzoate ca 99.9 3.1E-23 6.8E-28 192.1 10.8 161 92-265 132-304 (309)
14 PRK13951 bifunctional shikimat 99.9 1.3E-22 2.7E-27 198.3 10.7 149 94-256 1-155 (488)
15 cd00464 SK Shikimate kinase (S 99.9 2.1E-22 4.6E-27 166.3 9.7 138 95-233 1-148 (154)
16 PRK05541 adenylylsulfate kinas 99.7 2.8E-17 6.1E-22 139.7 5.4 151 91-262 5-172 (176)
17 PRK03839 putative kinase; Prov 99.6 3.5E-16 7.7E-21 133.3 6.9 143 95-262 2-153 (180)
18 PRK04182 cytidylate kinase; Pr 99.6 3.5E-16 7.6E-21 132.2 6.7 152 94-265 1-176 (180)
19 PRK09169 hypothetical protein; 99.6 6.5E-16 1.4E-20 166.6 9.9 139 91-233 2108-2264(2316)
20 PRK10078 ribose 1,5-bisphospho 99.6 2.9E-16 6.4E-21 134.9 5.5 159 93-267 2-181 (186)
21 PRK05537 bifunctional sulfate 99.6 2.1E-16 4.6E-21 157.2 5.0 148 91-262 390-562 (568)
22 PRK14532 adenylate kinase; Pro 99.6 1.8E-15 4E-20 129.7 7.4 151 95-261 2-186 (188)
23 KOG3354 Gluconate kinase [Carb 99.6 4E-15 8.6E-20 123.5 8.4 152 93-262 12-188 (191)
24 COG3265 GntK Gluconate kinase 99.6 3.1E-15 6.7E-20 123.3 7.4 144 99-262 1-159 (161)
25 PRK06762 hypothetical protein; 99.6 3.9E-15 8.4E-20 125.1 7.4 149 93-261 2-163 (166)
26 PRK03846 adenylylsulfate kinas 99.5 5.1E-15 1.1E-19 128.5 6.0 152 92-262 23-192 (198)
27 COG1102 Cmk Cytidylate kinase 99.5 1.6E-14 3.5E-19 120.7 8.3 152 94-265 1-175 (179)
28 PRK00889 adenylylsulfate kinas 99.5 7.3E-15 1.6E-19 124.7 6.2 153 92-262 3-170 (175)
29 PRK14733 coaE dephospho-CoA ki 99.5 1.8E-14 3.9E-19 126.1 8.7 158 92-263 5-199 (204)
30 PRK00081 coaE dephospho-CoA ki 99.5 2.1E-14 4.5E-19 124.6 8.1 152 94-262 3-193 (194)
31 COG0529 CysC Adenylylsulfate k 99.5 1.1E-14 2.4E-19 123.4 5.1 153 92-263 22-192 (197)
32 PRK14530 adenylate kinase; Pro 99.5 5.4E-14 1.2E-18 123.5 9.1 110 92-205 2-126 (215)
33 TIGR01313 therm_gnt_kin carboh 99.5 5.4E-14 1.2E-18 117.8 8.5 146 96-261 1-162 (163)
34 PRK01184 hypothetical protein; 99.5 4.4E-14 9.6E-19 120.7 7.6 155 94-265 2-181 (184)
35 PRK13975 thymidylate kinase; P 99.5 6.5E-14 1.4E-18 120.5 7.2 153 93-263 2-191 (196)
36 PRK03333 coaE dephospho-CoA ki 99.5 4.2E-14 9.2E-19 135.3 6.4 156 94-265 2-195 (395)
37 PRK14734 coaE dephospho-CoA ki 99.5 1.7E-13 3.8E-18 119.5 9.4 155 94-265 2-197 (200)
38 PRK14730 coaE dephospho-CoA ki 99.5 1.5E-13 3.2E-18 119.5 8.4 151 94-260 2-192 (195)
39 PRK13477 bifunctional pantoate 99.5 2.8E-13 6E-18 132.9 10.6 152 92-262 283-503 (512)
40 TIGR02173 cyt_kin_arch cytidyl 99.4 4.8E-13 1.1E-17 112.1 9.4 146 94-260 1-170 (171)
41 PLN02422 dephospho-CoA kinase 99.4 4.4E-13 9.4E-18 119.5 9.3 154 94-264 2-196 (232)
42 COG1936 Predicted nucleotide k 99.4 1.1E-13 2.3E-18 117.1 4.9 141 94-262 1-156 (180)
43 COG0283 Cmk Cytidylate kinase 99.4 3.6E-13 7.8E-18 117.6 8.0 38 94-131 5-42 (222)
44 PTZ00451 dephospho-CoA kinase; 99.4 5.5E-13 1.2E-17 119.8 9.3 158 94-264 2-209 (244)
45 TIGR00152 dephospho-CoA kinase 99.4 3.9E-13 8.3E-18 115.6 7.5 146 95-257 1-187 (188)
46 COG0237 CoaE Dephospho-CoA kin 99.4 1.9E-13 4.1E-18 119.4 4.7 158 93-266 2-196 (201)
47 PF01121 CoaE: Dephospho-CoA k 99.4 2.3E-13 5E-18 117.0 5.0 136 94-233 1-175 (180)
48 TIGR01360 aden_kin_iso1 adenyl 99.4 8.1E-13 1.8E-17 112.4 8.3 154 92-262 2-187 (188)
49 TIGR01359 UMP_CMP_kin_fam UMP- 99.4 1.3E-12 2.8E-17 111.2 9.1 150 95-260 1-182 (183)
50 PRK13808 adenylate kinase; Pro 99.4 2.4E-12 5.2E-17 120.1 10.4 154 95-265 2-196 (333)
51 PLN02674 adenylate kinase 99.4 1.5E-12 3.2E-17 117.0 8.6 106 93-202 31-154 (244)
52 TIGR03574 selen_PSTK L-seryl-t 99.4 1.8E-12 3.9E-17 116.3 9.0 150 95-262 1-169 (249)
53 cd00227 CPT Chloramphenicol (C 99.4 2.5E-12 5.3E-17 109.4 9.3 152 93-260 2-174 (175)
54 PF01583 APS_kinase: Adenylyls 99.4 1.5E-13 3.2E-18 115.4 1.5 135 92-233 1-153 (156)
55 KOG3347 Predicted nucleotide k 99.4 8.1E-13 1.8E-17 109.2 5.7 126 92-233 6-149 (176)
56 PRK14732 coaE dephospho-CoA ki 99.4 2E-12 4.2E-17 112.6 8.4 153 95-264 1-192 (196)
57 PLN02200 adenylate kinase fami 99.4 1.8E-12 4E-17 115.8 8.3 159 93-267 43-229 (234)
58 TIGR00455 apsK adenylylsulfate 99.4 6.6E-13 1.4E-17 113.6 5.2 151 92-260 17-184 (184)
59 PRK14731 coaE dephospho-CoA ki 99.4 2.9E-12 6.3E-17 112.3 9.1 156 93-265 5-205 (208)
60 TIGR02322 phosphon_PhnN phosph 99.3 1.6E-12 3.4E-17 110.5 7.0 154 93-261 1-177 (179)
61 PRK14531 adenylate kinase; Pro 99.3 7.2E-12 1.6E-16 107.4 10.3 152 93-260 2-182 (183)
62 PRK02496 adk adenylate kinase; 99.3 6.4E-12 1.4E-16 107.4 9.2 150 94-260 2-182 (184)
63 PRK06217 hypothetical protein; 99.3 5E-12 1.1E-16 108.4 8.4 98 94-202 2-100 (183)
64 cd02022 DPCK Dephospho-coenzym 99.3 3.3E-12 7.2E-17 109.2 6.7 135 95-233 1-174 (179)
65 PRK00279 adk adenylate kinase; 99.3 8.7E-12 1.9E-16 109.5 9.4 107 95-205 2-127 (215)
66 PRK08356 hypothetical protein; 99.3 1E-11 2.2E-16 107.5 9.6 152 93-263 5-193 (195)
67 PRK05506 bifunctional sulfate 99.3 4.3E-12 9.2E-17 128.2 7.4 153 92-262 459-628 (632)
68 cd02021 GntK Gluconate kinase 99.3 5.7E-12 1.2E-16 104.0 6.6 121 95-221 1-137 (150)
69 cd02020 CMPK Cytidine monophos 99.3 1.1E-11 2.4E-16 101.0 8.2 115 95-219 1-123 (147)
70 PRK14527 adenylate kinase; Pro 99.2 3.7E-11 8E-16 103.6 9.8 153 92-260 5-190 (191)
71 PRK11545 gntK gluconate kinase 99.2 3.4E-11 7.3E-16 101.7 8.4 143 99-262 1-160 (163)
72 TIGR01351 adk adenylate kinase 99.2 4.3E-11 9.4E-16 104.7 8.9 107 95-205 1-124 (210)
73 PRK00023 cmk cytidylate kinase 99.2 1.1E-10 2.4E-15 103.7 11.6 38 93-130 4-41 (225)
74 PRK08233 hypothetical protein; 99.2 3E-11 6.6E-16 102.2 7.6 153 92-262 2-177 (182)
75 PRK14528 adenylate kinase; Pro 99.2 3.2E-11 6.9E-16 104.0 7.8 39 94-132 2-40 (186)
76 PHA02530 pseT polynucleotide k 99.2 8.1E-11 1.8E-15 107.9 10.6 126 93-218 2-139 (300)
77 TIGR00017 cmk cytidylate kinas 99.2 1.4E-10 2.9E-15 102.6 10.2 38 93-130 2-39 (217)
78 PRK09825 idnK D-gluconate kina 99.2 1.4E-10 3.1E-15 99.2 10.0 151 92-263 2-169 (176)
79 KOG3220 Similar to bacterial d 99.2 1.5E-10 3.3E-15 100.0 8.9 154 94-266 2-198 (225)
80 PRK14526 adenylate kinase; Pro 99.1 1.8E-10 4E-15 101.4 9.5 104 95-202 2-118 (211)
81 PRK05416 glmZ(sRNA)-inactivati 99.1 1.3E-10 2.8E-15 106.9 8.5 138 92-262 5-160 (288)
82 PRK06547 hypothetical protein; 99.1 2.9E-11 6.2E-16 103.3 3.7 113 92-205 14-138 (172)
83 PLN02459 probable adenylate ki 99.1 2.7E-10 5.8E-15 103.2 9.9 105 94-202 30-149 (261)
84 PRK04040 adenylate kinase; Pro 99.1 1.8E-10 3.9E-15 99.6 8.2 155 93-260 2-187 (188)
85 PRK11860 bifunctional 3-phosph 99.1 1.6E-10 3.4E-15 117.4 9.0 151 93-262 442-655 (661)
86 PRK09518 bifunctional cytidyla 99.1 2.3E-10 5.1E-15 117.1 9.9 37 94-130 2-38 (712)
87 PF13671 AAA_33: AAA domain; P 99.1 7.7E-11 1.7E-15 95.9 4.9 107 95-205 1-118 (143)
88 PRK14529 adenylate kinase; Pro 99.1 6.1E-10 1.3E-14 98.9 10.1 104 95-202 2-122 (223)
89 cd01428 ADK Adenylate kinase ( 99.1 1.5E-10 3.2E-15 99.1 6.0 107 95-205 1-125 (194)
90 TIGR03575 selen_PSTK_euk L-ser 99.1 4.2E-11 9E-16 112.3 2.4 96 95-202 1-118 (340)
91 cd01672 TMPK Thymidine monopho 99.1 1E-09 2.2E-14 93.6 10.0 24 94-117 1-24 (200)
92 PTZ00322 6-phosphofructo-2-kin 99.1 7.7E-11 1.7E-15 119.8 3.2 139 92-232 214-382 (664)
93 PRK08118 topology modulation p 99.0 3.2E-10 6.9E-15 96.2 6.1 92 94-202 2-95 (167)
94 KOG3079 Uridylate kinase/adeny 99.0 8.8E-10 1.9E-14 94.1 8.3 154 92-262 7-193 (195)
95 COG4088 Predicted nucleotide k 99.0 1.2E-09 2.5E-14 95.2 9.0 136 94-232 2-156 (261)
96 KOG0635 Adenosine 5'-phosphosu 99.0 3.5E-10 7.7E-15 93.9 5.4 154 92-263 30-201 (207)
97 PRK00698 tmk thymidylate kinas 99.0 3E-09 6.5E-14 91.7 11.1 28 92-119 2-29 (205)
98 PLN02842 nucleotide kinase 99.0 1.5E-09 3.2E-14 106.3 9.9 157 98-271 2-211 (505)
99 PRK13973 thymidylate kinase; P 99.0 1.3E-09 2.8E-14 95.8 8.3 31 92-122 2-35 (213)
100 KOG3877 NADH:ubiquinone oxidor 99.0 4.7E-10 1E-14 101.3 5.4 173 73-258 52-293 (393)
101 PTZ00088 adenylate kinase 1; P 99.0 9.3E-10 2E-14 98.1 6.7 107 92-202 5-126 (229)
102 PF07931 CPT: Chloramphenicol 99.0 4.1E-10 8.9E-15 96.3 4.1 152 93-261 1-174 (174)
103 PRK05480 uridine/cytidine kina 98.9 5.4E-09 1.2E-13 91.2 10.4 38 92-129 5-45 (209)
104 PRK09183 transposase/IS protei 98.9 4.5E-11 9.7E-16 108.4 -3.4 87 18-116 33-125 (259)
105 PF13207 AAA_17: AAA domain; P 98.9 5.6E-10 1.2E-14 88.4 3.4 34 95-128 1-34 (121)
106 cd02023 UMPK Uridine monophosp 98.9 5E-09 1.1E-13 90.5 9.3 36 95-130 1-39 (198)
107 PRK06526 transposase; Provisio 98.9 7.9E-11 1.7E-15 106.5 -3.2 87 19-117 30-122 (254)
108 PF03668 ATP_bind_2: P-loop AT 98.9 2.2E-09 4.7E-14 97.9 6.1 138 94-261 2-155 (284)
109 COG1428 Deoxynucleoside kinase 98.9 9.6E-09 2.1E-13 89.7 9.7 41 93-133 4-48 (216)
110 COG0563 Adk Adenylate kinase a 98.9 8.5E-09 1.8E-13 88.5 8.7 39 94-132 1-39 (178)
111 PRK12269 bifunctional cytidyla 98.9 8.6E-09 1.9E-13 106.9 10.2 40 92-131 33-72 (863)
112 TIGR00041 DTMP_kinase thymidyl 98.8 8.1E-09 1.8E-13 88.6 7.7 28 92-119 2-29 (195)
113 PLN02924 thymidylate kinase 98.8 4.3E-08 9.3E-13 86.9 12.5 167 91-276 14-213 (220)
114 PRK07261 topology modulation p 98.8 6.2E-09 1.4E-13 88.5 5.0 94 94-202 1-95 (171)
115 PF00485 PRK: Phosphoribulokin 98.8 8.3E-09 1.8E-13 89.2 4.7 25 95-119 1-25 (194)
116 PRK14737 gmk guanylate kinase; 98.7 1.5E-08 3.2E-13 87.6 6.2 150 92-261 3-183 (186)
117 PRK09270 nucleoside triphospha 98.7 2.5E-08 5.4E-13 88.5 7.4 138 92-233 32-221 (229)
118 PF00406 ADK: Adenylate kinase 98.7 1E-08 2.2E-13 84.9 4.3 101 98-202 1-119 (151)
119 COG1660 Predicted P-loop-conta 98.7 1.3E-08 2.9E-13 91.2 5.2 136 94-262 2-157 (286)
120 PRK08181 transposase; Validate 98.7 6.2E-10 1.3E-14 101.5 -4.2 101 18-130 36-148 (269)
121 PTZ00301 uridine kinase; Provi 98.7 1.1E-07 2.4E-12 83.7 9.9 37 92-128 2-45 (210)
122 COG0572 Udk Uridine kinase [Nu 98.7 1.2E-07 2.5E-12 83.7 9.5 38 92-129 7-47 (218)
123 PF08433 KTI12: Chromatin asso 98.7 6.6E-08 1.4E-12 88.3 8.0 131 94-231 2-154 (270)
124 cd02027 APSK Adenosine 5'-phos 98.7 2.8E-08 6.1E-13 82.6 4.9 106 95-206 1-117 (149)
125 COG0125 Tmk Thymidylate kinase 98.7 2.6E-07 5.7E-12 81.2 11.1 158 92-265 2-206 (208)
126 COG2019 AdkA Archaeal adenylat 98.6 2.2E-07 4.8E-12 78.5 9.6 156 93-261 4-187 (189)
127 cd02030 NDUO42 NADH:Ubiquinone 98.6 1.1E-07 2.4E-12 83.9 8.2 28 95-122 1-28 (219)
128 PRK13976 thymidylate kinase; P 98.6 5.6E-07 1.2E-11 79.2 12.3 165 94-267 1-206 (209)
129 PRK13974 thymidylate kinase; P 98.6 1.5E-07 3.2E-12 82.7 8.7 27 92-118 2-28 (212)
130 PRK12339 2-phosphoglycerate ki 98.6 5.4E-08 1.2E-12 84.9 5.8 39 92-130 2-41 (197)
131 PLN02348 phosphoribulokinase 98.6 6.9E-08 1.5E-12 91.9 7.0 47 186-232 183-243 (395)
132 TIGR03263 guanyl_kin guanylate 98.6 6.8E-08 1.5E-12 81.8 6.3 29 93-121 1-29 (180)
133 PRK00300 gmk guanylate kinase; 98.6 1.5E-07 3.3E-12 81.4 8.5 152 92-263 4-185 (205)
134 cd02026 PRK Phosphoribulokinas 98.6 6.1E-08 1.3E-12 88.6 6.0 34 95-128 1-37 (273)
135 PF13238 AAA_18: AAA domain; P 98.6 3.4E-08 7.4E-13 78.2 3.7 25 96-120 1-25 (129)
136 PRK07667 uridine kinase; Provi 98.6 9.5E-08 2.1E-12 82.7 6.4 38 93-130 17-59 (193)
137 PRK06696 uridine kinase; Valid 98.6 9.2E-08 2E-12 84.5 6.2 37 92-128 21-62 (223)
138 PLN02165 adenylate isopentenyl 98.6 8.5E-08 1.8E-12 89.6 5.6 114 91-205 41-195 (334)
139 PRK07429 phosphoribulokinase; 98.6 1.3E-07 2.8E-12 88.5 6.9 37 92-128 7-46 (327)
140 cd01673 dNK Deoxyribonucleosid 98.5 2.5E-07 5.5E-12 79.4 8.0 28 95-122 1-28 (193)
141 COG0645 Predicted kinase [Gene 98.5 1.7E-07 3.6E-12 79.3 6.6 126 94-224 2-148 (170)
142 TIGR00235 udk uridine kinase. 98.5 8E-07 1.7E-11 77.5 10.6 37 92-128 5-44 (207)
143 COG3709 Uncharacterized compon 98.5 6.2E-07 1.3E-11 75.5 8.5 156 92-263 4-183 (192)
144 PRK15453 phosphoribulokinase; 98.5 4.5E-07 9.7E-12 83.0 8.4 38 92-129 4-46 (290)
145 PRK14738 gmk guanylate kinase; 98.5 4.3E-07 9.2E-12 79.5 7.8 25 92-116 12-36 (206)
146 PRK12338 hypothetical protein; 98.4 5.7E-07 1.2E-11 83.7 8.1 40 92-131 3-43 (319)
147 PRK07933 thymidylate kinase; V 98.4 7.2E-07 1.6E-11 78.6 7.7 27 94-120 1-27 (213)
148 cd02024 NRK1 Nicotinamide ribo 98.4 3.1E-07 6.7E-12 79.5 4.1 35 95-129 1-36 (187)
149 TIGR01663 PNK-3'Pase polynucle 98.4 5.9E-07 1.3E-11 88.9 6.5 92 92-205 368-468 (526)
150 smart00072 GuKc Guanylate kina 98.4 1.5E-06 3.3E-11 74.4 8.2 25 93-117 2-26 (184)
151 PF00625 Guanylate_kin: Guanyl 98.4 4E-07 8.7E-12 77.9 4.3 26 93-118 2-27 (183)
152 COG0194 Gmk Guanylate kinase [ 98.3 6.5E-07 1.4E-11 77.0 5.1 29 92-120 3-31 (191)
153 PRK04220 2-phosphoglycerate ki 98.3 2.8E-06 6E-11 78.5 9.6 39 92-130 91-130 (301)
154 cd02029 PRK_like Phosphoribulo 98.3 3.1E-06 6.6E-11 77.1 8.8 35 95-129 1-40 (277)
155 PF02223 Thymidylate_kin: Thym 98.3 3E-06 6.5E-11 72.3 7.9 25 98-122 1-25 (186)
156 PRK12337 2-phosphoglycerate ki 98.3 4.5E-06 9.7E-11 81.2 9.7 41 92-132 254-295 (475)
157 PF13189 Cytidylate_kin2: Cyti 98.2 9.8E-07 2.1E-11 75.6 4.3 110 95-212 1-142 (179)
158 COG4639 Predicted kinase [Gene 98.2 7.9E-06 1.7E-10 68.4 7.9 118 94-218 3-132 (168)
159 cd02028 UMPK_like Uridine mono 98.2 2.7E-06 5.9E-11 72.8 5.3 35 95-129 1-40 (179)
160 TIGR00390 hslU ATP-dependent p 98.1 3.9E-06 8.5E-11 80.7 4.8 59 91-150 45-106 (441)
161 COG2074 2-phosphoglycerate kin 98.0 2.4E-05 5.2E-10 70.4 8.4 41 90-130 86-127 (299)
162 PHA00729 NTP-binding motif con 98.0 4.7E-06 1E-10 74.1 3.8 39 81-120 6-44 (226)
163 PF06414 Zeta_toxin: Zeta toxi 98.0 1.2E-05 2.5E-10 69.8 6.2 41 90-130 12-55 (199)
164 PF01695 IstB_IS21: IstB-like 98.0 2.2E-06 4.8E-11 73.5 1.4 78 52-130 1-89 (178)
165 PRK05439 pantothenate kinase; 98.0 8.3E-06 1.8E-10 75.9 5.2 37 92-128 85-128 (311)
166 KOG4238 Bifunctional ATP sulfu 98.0 5.7E-06 1.2E-10 77.6 3.5 154 91-262 48-220 (627)
167 cd02025 PanK Pantothenate kina 98.0 1.1E-05 2.4E-10 71.4 5.2 34 95-128 1-41 (220)
168 TIGR00554 panK_bact pantothena 97.9 1.2E-05 2.6E-10 74.2 5.0 27 92-118 61-87 (290)
169 PLN02318 phosphoribulokinase/u 97.9 2.9E-05 6.3E-10 77.6 7.2 55 73-127 43-100 (656)
170 PF00004 AAA: ATPase family as 97.9 5.4E-06 1.2E-10 65.7 1.3 33 96-128 1-35 (132)
171 PRK00091 miaA tRNA delta(2)-is 97.8 2.4E-05 5.2E-10 72.8 5.5 36 92-127 3-38 (307)
172 cd02019 NK Nucleoside/nucleoti 97.8 1E-05 2.2E-10 58.5 1.5 23 95-117 1-23 (69)
173 PLN02748 tRNA dimethylallyltra 97.8 2.8E-05 6.1E-10 76.1 4.9 36 92-127 21-56 (468)
174 COG3896 Chloramphenicol 3-O-ph 97.7 6.8E-05 1.5E-09 63.2 6.0 48 84-131 14-63 (205)
175 PLN02840 tRNA dimethylallyltra 97.7 4.6E-05 9.9E-10 73.5 5.0 36 92-127 20-55 (421)
176 PRK05201 hslU ATP-dependent pr 97.7 5.8E-05 1.2E-09 72.9 5.6 36 91-126 48-83 (443)
177 PHA03132 thymidine kinase; Pro 97.7 5.1E-05 1.1E-09 75.8 5.3 29 92-120 256-284 (580)
178 TIGR00174 miaA tRNA isopenteny 97.7 4.3E-05 9.4E-10 70.4 4.4 33 95-127 1-33 (287)
179 KOG0733 Nuclear AAA ATPase (VC 97.6 0.00013 2.8E-09 72.7 6.2 110 91-202 221-368 (802)
180 PLN02772 guanylate kinase 97.5 0.00019 4.1E-09 68.7 6.9 34 84-117 120-159 (398)
181 TIGR01650 PD_CobS cobaltochela 97.5 3.8E-05 8.3E-10 71.8 2.0 54 69-122 38-93 (327)
182 KOG3327 Thymidylate kinase/ade 97.5 0.0001 2.2E-09 63.5 4.2 159 91-265 3-198 (208)
183 PF01591 6PF2K: 6-phosphofruct 97.5 0.00026 5.7E-09 62.9 7.1 55 92-146 11-70 (222)
184 COG1072 CoaA Panthothenate kin 97.5 3.9E-05 8.4E-10 69.8 1.6 111 92-205 81-231 (283)
185 cd00071 GMPK Guanosine monopho 97.5 0.00024 5.3E-09 58.1 5.9 24 95-118 1-24 (137)
186 smart00382 AAA ATPases associa 97.5 6E-05 1.3E-09 58.8 2.2 28 93-120 2-29 (148)
187 KOG1384 tRNA delta(2)-isopente 97.5 0.00019 4.2E-09 66.7 5.5 112 92-205 6-158 (348)
188 PF13521 AAA_28: AAA domain; P 97.4 6.9E-05 1.5E-09 62.6 2.2 27 95-122 1-27 (163)
189 PRK06761 hypothetical protein; 97.4 6E-05 1.3E-09 69.2 1.7 33 93-125 3-35 (282)
190 PRK08099 bifunctional DNA-bind 97.4 0.00079 1.7E-08 64.9 9.5 30 93-122 219-248 (399)
191 PF07728 AAA_5: AAA domain (dy 97.4 9.1E-05 2E-09 60.0 2.2 27 95-121 1-27 (139)
192 COG1618 Predicted nucleotide k 97.3 0.00013 2.9E-09 61.5 2.8 29 92-120 4-32 (179)
193 KOG0744 AAA+-type ATPase [Post 97.3 8.9E-05 1.9E-09 69.0 1.9 31 93-123 177-207 (423)
194 PRK14729 miaA tRNA delta(2)-is 97.3 0.00027 5.9E-09 65.5 4.7 34 93-127 4-37 (300)
195 PRK09087 hypothetical protein; 97.3 0.00024 5.1E-09 63.2 4.1 35 93-127 44-78 (226)
196 PF05496 RuvB_N: Holliday junc 97.3 0.00013 2.8E-09 64.9 2.1 30 93-122 50-79 (233)
197 KOG0730 AAA+-type ATPase [Post 97.3 0.00044 9.5E-09 69.4 5.7 53 92-144 467-523 (693)
198 COG0466 Lon ATP-dependent Lon 97.2 0.00013 2.8E-09 73.8 1.8 39 85-123 342-380 (782)
199 COG1484 DnaC DNA replication p 97.2 2.4E-05 5.1E-10 70.9 -3.5 86 21-118 38-130 (254)
200 PF03215 Rad17: Rad17 cell cyc 97.2 0.00014 3E-09 72.3 1.2 31 93-123 45-75 (519)
201 PRK05800 cobU adenosylcobinami 97.2 0.00023 5E-09 60.6 2.4 35 94-128 2-38 (170)
202 PRK05342 clpX ATP-dependent pr 97.2 0.00022 4.8E-09 68.9 2.6 34 92-125 107-140 (412)
203 cd00009 AAA The AAA+ (ATPases 97.2 0.00021 4.6E-09 56.3 2.0 26 92-117 18-43 (151)
204 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00021 4.5E-09 64.8 2.1 31 92-122 20-50 (262)
205 TIGR00150 HI0065_YjeE ATPase, 97.2 0.00025 5.3E-09 58.2 2.3 37 84-120 12-49 (133)
206 PF13173 AAA_14: AAA domain 97.1 0.00029 6.2E-09 56.7 2.7 37 93-129 2-42 (128)
207 TIGR02881 spore_V_K stage V sp 97.1 0.00032 7E-09 63.3 3.2 27 91-117 40-66 (261)
208 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00027 5.8E-09 67.0 2.7 28 92-119 77-104 (361)
209 PHA02575 1 deoxynucleoside mon 97.1 0.00024 5.1E-09 63.1 2.0 36 94-130 1-37 (227)
210 TIGR02880 cbbX_cfxQ probable R 97.1 0.00028 6E-09 64.9 2.4 27 92-118 57-83 (284)
211 CHL00181 cbbX CbbX; Provisiona 97.1 0.00025 5.4E-09 65.3 2.0 26 92-117 58-83 (287)
212 KOG1970 Checkpoint RAD17-RFC c 97.1 0.00029 6.3E-09 69.4 2.2 35 89-123 106-140 (634)
213 KOG2004 Mitochondrial ATP-depe 97.0 0.00033 7.1E-09 70.9 2.1 39 85-123 430-468 (906)
214 COG0324 MiaA tRNA delta(2)-iso 97.0 0.00099 2.1E-08 61.9 5.0 35 93-127 3-37 (308)
215 TIGR00382 clpX endopeptidase C 96.9 0.00042 9E-09 67.0 2.2 30 93-122 116-145 (413)
216 PF08303 tRNA_lig_kinase: tRNA 96.9 0.00044 9.5E-09 58.6 2.0 33 96-128 2-35 (168)
217 PF07726 AAA_3: ATPase family 96.9 0.00058 1.3E-08 55.7 2.5 27 96-122 2-28 (131)
218 KOG3078 Adenylate kinase [Nucl 96.9 0.0011 2.4E-08 59.2 4.4 40 92-131 14-53 (235)
219 PLN00020 ribulose bisphosphate 96.9 0.0006 1.3E-08 64.9 2.8 42 92-133 147-190 (413)
220 PF03266 NTPase_1: NTPase; In 96.9 0.00058 1.3E-08 58.0 2.4 23 95-117 1-23 (168)
221 PRK06620 hypothetical protein; 96.9 0.0016 3.5E-08 57.4 5.2 30 94-123 45-74 (214)
222 CHL00195 ycf46 Ycf46; Provisio 96.9 0.00049 1.1E-08 67.9 2.0 34 92-125 258-291 (489)
223 PRK10536 hypothetical protein; 96.9 0.00029 6.2E-09 64.0 0.2 56 59-115 37-96 (262)
224 PRK03992 proteasome-activating 96.8 0.00056 1.2E-08 65.6 2.0 32 92-123 164-195 (389)
225 PF00910 RNA_helicase: RNA hel 96.8 0.00063 1.4E-08 53.2 1.9 23 96-118 1-23 (107)
226 cd00820 PEPCK_HprK Phosphoenol 96.8 0.00058 1.3E-08 53.9 1.7 34 92-127 14-47 (107)
227 PF02367 UPF0079: Uncharacteri 96.8 0.00095 2.1E-08 54.0 2.7 29 92-120 14-42 (123)
228 KOG3062 RNA polymerase II elon 96.8 0.0043 9.4E-08 55.2 6.9 25 94-118 2-26 (281)
229 COG1124 DppF ABC-type dipeptid 96.8 0.00077 1.7E-08 60.4 2.2 34 79-115 22-55 (252)
230 COG2256 MGS1 ATPase related to 96.8 0.00066 1.4E-08 64.8 1.9 32 94-125 49-80 (436)
231 PHA02244 ATPase-like protein 96.8 0.0007 1.5E-08 64.4 2.1 59 69-127 89-153 (383)
232 TIGR03420 DnaA_homol_Hda DnaA 96.7 0.00063 1.4E-08 59.4 1.5 27 92-118 37-63 (226)
233 PF05729 NACHT: NACHT domain 96.7 0.0009 1.9E-08 54.8 2.4 27 94-120 1-27 (166)
234 TIGR01242 26Sp45 26S proteasom 96.7 0.00075 1.6E-08 63.9 2.1 32 92-123 155-186 (364)
235 COG4619 ABC-type uncharacteriz 96.7 0.00094 2E-08 57.2 2.3 24 92-115 28-51 (223)
236 PRK11784 tRNA 2-selenouridine 96.7 0.0021 4.5E-08 60.9 4.6 105 92-202 140-252 (345)
237 PF13401 AAA_22: AAA domain; P 96.7 0.0011 2.3E-08 52.6 2.3 26 93-118 4-29 (131)
238 TIGR01526 nadR_NMN_Atrans nico 96.7 0.00092 2E-08 62.6 2.2 30 93-122 162-191 (325)
239 PTZ00454 26S protease regulato 96.7 0.00088 1.9E-08 64.5 2.1 32 92-123 178-209 (398)
240 PF07724 AAA_2: AAA domain (Cd 96.7 0.00091 2E-08 57.0 1.9 27 93-119 3-29 (171)
241 TIGR01241 FtsH_fam ATP-depende 96.7 0.00091 2E-08 66.0 2.2 32 93-124 88-119 (495)
242 PRK00080 ruvB Holliday junctio 96.7 0.00097 2.1E-08 62.2 2.3 29 93-121 51-79 (328)
243 PRK04195 replication factor C 96.7 0.00083 1.8E-08 66.1 1.9 32 93-124 39-70 (482)
244 COG1220 HslU ATP-dependent pro 96.7 0.0021 4.5E-08 60.4 4.2 38 85-122 42-79 (444)
245 TIGR00635 ruvB Holliday juncti 96.6 0.001 2.2E-08 61.0 2.3 29 93-121 30-58 (305)
246 PRK00771 signal recognition pa 96.6 0.0049 1.1E-07 60.1 6.9 37 92-128 94-135 (437)
247 PF01745 IPT: Isopentenyl tran 96.6 0.0011 2.4E-08 58.6 2.1 34 94-127 2-35 (233)
248 COG1219 ClpX ATP-dependent pro 96.6 0.0011 2.3E-08 61.9 2.1 39 91-129 95-135 (408)
249 PRK08903 DnaA regulatory inact 96.6 0.0011 2.4E-08 58.2 2.1 37 92-128 41-82 (227)
250 KOG0739 AAA+-type ATPase [Post 96.6 0.011 2.5E-07 54.8 8.6 40 94-133 167-208 (439)
251 cd03115 SRP The signal recogni 96.6 0.0012 2.7E-08 55.5 2.1 33 95-127 2-39 (173)
252 PRK10646 ADP-binding protein; 96.6 0.00096 2.1E-08 56.0 1.4 37 84-120 18-55 (153)
253 PRK12724 flagellar biosynthesi 96.5 0.0053 1.1E-07 59.5 6.2 37 92-128 222-264 (432)
254 COG1116 TauB ABC-type nitrate/ 96.5 0.0015 3.3E-08 58.7 2.3 24 92-115 28-51 (248)
255 KOG3308 Uncharacterized protei 96.5 0.0041 9E-08 54.4 4.8 35 94-128 5-40 (225)
256 PRK13342 recombination factor 96.5 0.0013 2.9E-08 63.4 1.9 32 93-124 36-67 (413)
257 COG1126 GlnQ ABC-type polar am 96.5 0.0016 3.4E-08 57.7 2.1 23 92-114 27-49 (240)
258 COG4185 Uncharacterized protei 96.5 0.0023 5E-08 54.1 3.0 39 93-131 2-42 (187)
259 PF13191 AAA_16: AAA ATPase do 96.4 0.0017 3.7E-08 54.4 2.2 29 92-120 23-51 (185)
260 PF00005 ABC_tran: ABC transpo 96.4 0.0016 3.5E-08 52.2 1.9 26 92-117 10-35 (137)
261 PF13245 AAA_19: Part of AAA d 96.4 0.0023 5.1E-08 47.2 2.5 24 93-116 10-34 (76)
262 PTZ00361 26 proteosome regulat 96.4 0.0017 3.7E-08 63.3 2.2 32 92-123 216-247 (438)
263 TIGR00960 3a0501s02 Type II (G 96.4 0.0019 4.1E-08 56.3 2.2 25 92-116 28-52 (216)
264 PRK08084 DNA replication initi 96.4 0.0015 3.3E-08 58.2 1.6 27 92-118 44-70 (235)
265 TIGR01166 cbiO cobalt transpor 96.4 0.002 4.3E-08 55.1 2.2 24 92-115 17-40 (190)
266 PRK13695 putative NTPase; Prov 96.4 0.0023 4.9E-08 54.1 2.5 24 94-117 1-24 (174)
267 cd03292 ABC_FtsE_transporter F 96.4 0.002 4.4E-08 55.9 2.2 25 92-116 26-50 (214)
268 PRK15455 PrkA family serine pr 96.4 0.002 4.3E-08 64.6 2.4 27 92-118 102-128 (644)
269 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.4 0.0021 4.5E-08 56.1 2.3 25 92-116 29-53 (218)
270 COG0714 MoxR-like ATPases [Gen 96.3 0.0019 4.1E-08 60.4 2.0 32 91-122 41-72 (329)
271 TIGR02673 FtsE cell division A 96.3 0.0021 4.6E-08 55.8 2.2 25 92-116 27-51 (214)
272 TIGR03015 pepcterm_ATPase puta 96.3 0.0022 4.8E-08 57.5 2.4 26 93-118 43-68 (269)
273 COG1222 RPT1 ATP-dependent 26S 96.3 0.0025 5.3E-08 60.2 2.7 42 92-133 184-227 (406)
274 cd03225 ABC_cobalt_CbiO_domain 96.3 0.0022 4.7E-08 55.6 2.3 25 92-116 26-50 (211)
275 cd03269 ABC_putative_ATPase Th 96.3 0.0022 4.8E-08 55.6 2.3 25 92-116 25-49 (210)
276 cd03261 ABC_Org_Solvent_Resist 96.3 0.0022 4.7E-08 56.7 2.2 25 92-116 25-49 (235)
277 TIGR00763 lon ATP-dependent pr 96.3 0.0021 4.5E-08 67.0 2.4 32 91-122 345-376 (775)
278 KOG2702 Predicted panthothenat 96.3 0.0013 2.8E-08 58.8 0.7 61 52-118 84-144 (323)
279 cd01918 HprK_C HprK/P, the bif 96.3 0.0021 4.5E-08 53.8 1.9 36 92-128 13-48 (149)
280 TIGR00959 ffh signal recogniti 96.3 0.012 2.5E-07 57.3 7.4 36 93-128 99-140 (428)
281 cd03256 ABC_PhnC_transporter A 96.3 0.0022 4.8E-08 56.7 2.2 25 92-116 26-50 (241)
282 cd03224 ABC_TM1139_LivF_branch 96.3 0.0023 5E-08 55.8 2.2 25 92-116 25-49 (222)
283 CHL00176 ftsH cell division pr 96.3 0.0023 4.9E-08 65.2 2.4 32 93-124 216-247 (638)
284 COG1136 SalX ABC-type antimicr 96.3 0.0024 5.3E-08 56.8 2.3 24 92-115 30-53 (226)
285 PRK10751 molybdopterin-guanine 96.3 0.0034 7.3E-08 53.8 3.0 28 92-119 5-32 (173)
286 cd03263 ABC_subfamily_A The AB 96.3 0.0025 5.4E-08 55.6 2.3 25 92-116 27-51 (220)
287 PLN02796 D-glycerate 3-kinase 96.3 0.0029 6.3E-08 59.7 2.8 27 92-118 99-125 (347)
288 cd03259 ABC_Carb_Solutes_like 96.3 0.0025 5.5E-08 55.4 2.2 25 92-116 25-49 (213)
289 cd03219 ABC_Mj1267_LivG_branch 96.3 0.0023 5E-08 56.4 2.0 25 92-116 25-49 (236)
290 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0025 5.5E-08 55.2 2.2 25 92-116 25-49 (213)
291 PF00448 SRP54: SRP54-type pro 96.2 0.0034 7.5E-08 54.6 3.1 36 93-128 1-41 (196)
292 cd03260 ABC_PstB_phosphate_tra 96.2 0.0026 5.6E-08 55.9 2.3 26 92-117 25-50 (227)
293 TIGR03689 pup_AAA proteasome A 96.2 0.0024 5.1E-08 63.4 2.2 29 92-120 215-243 (512)
294 TIGR02315 ABC_phnC phosphonate 96.2 0.0025 5.5E-08 56.5 2.2 25 92-116 27-51 (243)
295 cd03293 ABC_NrtD_SsuB_transpor 96.2 0.0026 5.6E-08 55.7 2.2 25 92-116 29-53 (220)
296 TIGR03608 L_ocin_972_ABC putat 96.2 0.0027 5.8E-08 54.8 2.3 25 92-116 23-47 (206)
297 cd03235 ABC_Metallic_Cations A 96.2 0.0024 5.2E-08 55.5 2.0 25 92-116 24-48 (213)
298 cd03230 ABC_DR_subfamily_A Thi 96.2 0.0027 5.9E-08 53.6 2.2 25 92-116 25-49 (173)
299 KOG0733 Nuclear AAA ATPase (VC 96.2 0.0065 1.4E-07 60.9 5.1 42 92-133 544-587 (802)
300 cd03258 ABC_MetN_methionine_tr 96.2 0.0028 6E-08 55.9 2.3 26 92-117 30-55 (233)
301 TIGR02211 LolD_lipo_ex lipopro 96.2 0.0028 6.1E-08 55.3 2.3 25 92-116 30-54 (221)
302 PRK14490 putative bifunctional 96.2 0.0033 7.2E-08 59.8 3.0 30 91-120 3-32 (369)
303 cd03226 ABC_cobalt_CbiO_domain 96.2 0.0028 6E-08 54.9 2.2 25 92-116 25-49 (205)
304 cd03301 ABC_MalK_N The N-termi 96.2 0.0029 6.2E-08 54.9 2.3 26 92-117 25-50 (213)
305 PRK11629 lolD lipoprotein tran 96.2 0.0029 6.2E-08 55.9 2.3 25 92-116 34-58 (233)
306 COG3839 MalK ABC-type sugar tr 96.2 0.0028 6E-08 59.7 2.3 23 92-114 28-50 (338)
307 cd03222 ABC_RNaseL_inhibitor T 96.2 0.0033 7.2E-08 53.9 2.6 25 91-115 23-47 (177)
308 cd03229 ABC_Class3 This class 96.2 0.0031 6.7E-08 53.5 2.3 24 92-115 25-48 (178)
309 PRK13541 cytochrome c biogenes 96.2 0.003 6.6E-08 54.3 2.3 25 92-116 25-49 (195)
310 PRK04296 thymidine kinase; Pro 96.2 0.004 8.8E-08 53.7 3.0 25 93-117 2-26 (190)
311 cd03265 ABC_DrrA DrrA is the A 96.2 0.003 6.6E-08 55.2 2.3 25 92-116 25-49 (220)
312 cd01394 radB RadB. The archaea 96.2 0.0034 7.3E-08 54.8 2.5 38 89-126 15-57 (218)
313 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.0031 6.7E-08 55.8 2.3 24 92-115 26-49 (236)
314 cd01130 VirB11-like_ATPase Typ 96.1 0.0033 7.2E-08 53.9 2.3 26 92-117 24-49 (186)
315 TIGR01978 sufC FeS assembly AT 96.1 0.003 6.5E-08 55.9 2.2 25 92-116 25-49 (243)
316 cd01131 PilT Pilus retraction 96.1 0.0034 7.4E-08 54.5 2.4 24 95-118 3-26 (198)
317 PRK11124 artP arginine transpo 96.1 0.0032 6.8E-08 55.9 2.3 24 92-115 27-50 (242)
318 cd03296 ABC_CysA_sulfate_impor 96.1 0.0032 6.8E-08 55.9 2.2 25 92-116 27-51 (239)
319 cd03257 ABC_NikE_OppD_transpor 96.1 0.0031 6.8E-08 55.2 2.2 25 92-116 30-54 (228)
320 PRK10584 putative ABC transpor 96.1 0.0032 7E-08 55.3 2.3 25 92-116 35-59 (228)
321 TIGR03410 urea_trans_UrtE urea 96.1 0.0031 6.8E-08 55.4 2.1 26 92-117 25-50 (230)
322 cd03218 ABC_YhbG The ABC trans 96.1 0.0033 7.1E-08 55.3 2.2 25 92-116 25-49 (232)
323 cd03232 ABC_PDR_domain2 The pl 96.1 0.0033 7.1E-08 54.0 2.2 24 92-115 32-55 (192)
324 PLN03025 replication factor C 96.1 0.0026 5.6E-08 59.2 1.6 24 94-117 35-58 (319)
325 PRK14250 phosphate ABC transpo 96.1 0.0033 7.2E-08 55.9 2.2 25 92-116 28-52 (241)
326 cd01120 RecA-like_NTPases RecA 96.1 0.0034 7.3E-08 50.9 2.1 24 95-118 1-24 (165)
327 PRK08939 primosomal protein Dn 96.1 0.00083 1.8E-08 62.5 -1.7 71 47-117 100-180 (306)
328 cd03266 ABC_NatA_sodium_export 96.1 0.0034 7.5E-08 54.7 2.3 25 92-116 30-54 (218)
329 PRK11264 putative amino-acid A 96.1 0.0034 7.4E-08 55.9 2.3 25 92-116 28-52 (250)
330 PRK11248 tauB taurine transpor 96.1 0.0034 7.4E-08 56.5 2.3 25 92-116 26-50 (255)
331 cd03264 ABC_drug_resistance_li 96.1 0.0033 7.1E-08 54.6 2.1 24 92-116 25-48 (211)
332 PRK14242 phosphate transporter 96.1 0.0035 7.5E-08 56.0 2.3 25 92-116 31-55 (253)
333 COG1223 Predicted ATPase (AAA+ 96.1 0.0059 1.3E-07 55.7 3.7 55 79-133 128-193 (368)
334 PRK15177 Vi polysaccharide exp 96.1 0.0036 7.7E-08 54.9 2.3 24 92-115 12-35 (213)
335 COG0802 Predicted ATPase or ki 96.1 0.0028 6.1E-08 52.8 1.5 28 92-119 24-51 (149)
336 cd03234 ABCG_White The White s 96.1 0.0037 7.9E-08 55.0 2.3 26 92-117 32-57 (226)
337 PF03308 ArgK: ArgK protein; 96.1 0.0043 9.3E-08 56.3 2.7 27 92-118 28-54 (266)
338 TIGR01243 CDC48 AAA family ATP 96.1 0.0029 6.3E-08 65.4 1.9 42 92-133 486-529 (733)
339 PRK10744 pstB phosphate transp 96.0 0.0036 7.9E-08 56.3 2.3 25 92-116 38-62 (260)
340 PRK14247 phosphate ABC transpo 96.0 0.0036 7.8E-08 55.8 2.2 25 92-116 28-52 (250)
341 cd03223 ABCD_peroxisomal_ALDP 96.0 0.0037 8.1E-08 52.5 2.2 25 92-116 26-50 (166)
342 PRK14962 DNA polymerase III su 96.0 0.0038 8.2E-08 61.5 2.6 26 94-119 37-62 (472)
343 TIGR01243 CDC48 AAA family ATP 96.0 0.0028 6.1E-08 65.5 1.7 32 92-123 211-242 (733)
344 PRK13540 cytochrome c biogenes 96.0 0.0038 8.1E-08 53.9 2.3 24 92-115 26-49 (200)
345 TIGR03771 anch_rpt_ABC anchore 96.0 0.0037 8.1E-08 55.0 2.3 25 92-116 5-29 (223)
346 COG0464 SpoVK ATPases of the A 96.0 0.003 6.4E-08 62.2 1.7 42 92-133 275-318 (494)
347 cd03268 ABC_BcrA_bacitracin_re 96.0 0.0038 8.3E-08 54.0 2.3 24 92-115 25-48 (208)
348 PRK10247 putative ABC transpor 96.0 0.0038 8.3E-08 54.9 2.3 24 92-115 32-55 (225)
349 PRK09493 glnQ glutamine ABC tr 96.0 0.0038 8.3E-08 55.3 2.3 25 92-116 26-50 (240)
350 cd03247 ABCC_cytochrome_bd The 96.0 0.0039 8.5E-08 52.8 2.2 24 92-115 27-50 (178)
351 cd01128 rho_factor Transcripti 96.0 0.0041 8.8E-08 56.2 2.4 36 84-119 7-42 (249)
352 PRK11331 5-methylcytosine-spec 96.0 0.0037 7.9E-08 61.0 2.2 27 92-118 193-219 (459)
353 TIGR03005 ectoine_ehuA ectoine 96.0 0.0038 8.3E-08 55.8 2.2 25 92-116 25-49 (252)
354 PRK10416 signal recognition pa 96.0 0.0047 1E-07 57.8 2.8 36 92-127 113-153 (318)
355 PRK10771 thiQ thiamine transpo 96.0 0.0039 8.4E-08 55.0 2.2 25 92-116 24-48 (232)
356 cd03216 ABC_Carb_Monos_I This 96.0 0.0042 9.1E-08 52.1 2.2 24 92-115 25-48 (163)
357 TIGR01184 ntrCD nitrate transp 96.0 0.0041 8.8E-08 55.0 2.3 25 92-116 10-34 (230)
358 PRK14255 phosphate ABC transpo 96.0 0.004 8.8E-08 55.6 2.2 24 92-115 30-53 (252)
359 TIGR02323 CP_lyasePhnK phospho 96.0 0.004 8.7E-08 55.6 2.2 26 92-117 28-53 (253)
360 TIGR02770 nickel_nikD nickel i 96.0 0.004 8.6E-08 55.0 2.2 25 92-116 11-35 (230)
361 PRK14274 phosphate ABC transpo 96.0 0.0042 9.1E-08 55.8 2.3 25 92-116 37-61 (259)
362 PRK10895 lipopolysaccharide AB 96.0 0.0041 8.9E-08 55.1 2.2 25 92-116 28-52 (241)
363 cd03233 ABC_PDR_domain1 The pl 96.0 0.0037 8.1E-08 54.2 1.9 25 92-116 32-56 (202)
364 PRK14267 phosphate ABC transpo 96.0 0.0041 9E-08 55.5 2.3 25 92-116 29-53 (253)
365 cd03246 ABCC_Protease_Secretio 96.0 0.0044 9.6E-08 52.3 2.3 24 92-115 27-50 (173)
366 PRK11300 livG leucine/isoleuci 96.0 0.0042 9E-08 55.5 2.2 25 92-116 30-54 (255)
367 TIGR01189 ccmA heme ABC export 96.0 0.0043 9.4E-08 53.4 2.3 25 92-116 25-49 (198)
368 cd03251 ABCC_MsbA MsbA is an e 96.0 0.0042 9.2E-08 54.7 2.3 25 92-116 27-51 (234)
369 PRK06893 DNA replication initi 96.0 0.0049 1.1E-07 54.7 2.6 25 93-117 39-63 (229)
370 PRK10908 cell division protein 96.0 0.0043 9.3E-08 54.3 2.3 25 92-116 27-51 (222)
371 PF03193 DUF258: Protein of un 96.0 0.0024 5.3E-08 54.0 0.6 33 84-116 26-58 (161)
372 PRK14961 DNA polymerase III su 96.0 0.0045 9.8E-08 58.7 2.6 26 94-119 39-64 (363)
373 PRK13539 cytochrome c biogenes 96.0 0.0043 9.4E-08 53.9 2.3 25 92-116 27-51 (207)
374 TIGR00064 ftsY signal recognit 96.0 0.0052 1.1E-07 56.2 2.8 36 92-127 71-111 (272)
375 cd03215 ABC_Carb_Monos_II This 95.9 0.0043 9.3E-08 52.8 2.2 26 92-117 25-50 (182)
376 PRK11701 phnK phosphonate C-P 95.9 0.0043 9.2E-08 55.7 2.3 26 92-117 31-56 (258)
377 cd03214 ABC_Iron-Siderophores_ 95.9 0.0044 9.6E-08 52.6 2.3 24 92-115 24-47 (180)
378 PRK14241 phosphate transporter 95.9 0.0044 9.5E-08 55.7 2.3 25 92-116 29-53 (258)
379 PF03205 MobB: Molybdopterin g 95.9 0.0052 1.1E-07 50.6 2.6 25 94-118 1-25 (140)
380 TIGR00972 3a0107s01c2 phosphat 95.9 0.0044 9.5E-08 55.2 2.3 25 92-116 26-50 (247)
381 cd03254 ABCC_Glucan_exporter_l 95.9 0.0044 9.5E-08 54.4 2.2 26 92-117 28-53 (229)
382 cd03295 ABC_OpuCA_Osmoprotecti 95.9 0.0044 9.6E-08 55.0 2.3 25 92-116 26-50 (242)
383 TIGR00101 ureG urease accessor 95.9 0.005 1.1E-07 53.6 2.5 26 93-118 1-26 (199)
384 PRK14256 phosphate ABC transpo 95.9 0.0045 9.8E-08 55.3 2.3 26 92-117 29-54 (252)
385 PRK10787 DNA-binding ATP-depen 95.9 0.0041 9E-08 64.8 2.3 32 91-122 347-378 (784)
386 PRK09435 membrane ATPase/prote 95.9 0.0054 1.2E-07 57.8 2.8 27 92-118 55-81 (332)
387 PRK14262 phosphate ABC transpo 95.9 0.0045 9.7E-08 55.2 2.2 24 92-115 28-51 (250)
388 cd03228 ABCC_MRP_Like The MRP 95.9 0.0048 1E-07 52.0 2.3 25 92-116 27-51 (171)
389 PF10662 PduV-EutP: Ethanolami 95.9 0.0043 9.3E-08 51.5 1.9 22 94-115 2-23 (143)
390 PRK14248 phosphate ABC transpo 95.9 0.0046 1E-07 55.9 2.3 24 92-115 46-69 (268)
391 cd03298 ABC_ThiQ_thiamine_tran 95.9 0.0047 1E-07 53.6 2.2 25 92-116 23-47 (211)
392 PRK13543 cytochrome c biogenes 95.9 0.0047 1E-07 53.9 2.3 25 92-116 36-60 (214)
393 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.0048 1E-07 54.5 2.3 25 92-116 28-52 (238)
394 TIGR01277 thiQ thiamine ABC tr 95.9 0.0047 1E-07 53.8 2.2 25 92-116 23-47 (213)
395 cd03238 ABC_UvrA The excision 95.9 0.0047 1E-07 52.9 2.1 23 92-114 20-42 (176)
396 TIGR02324 CP_lyasePhnL phospho 95.9 0.0048 1E-07 54.1 2.2 25 92-116 33-57 (224)
397 cd03250 ABCC_MRP_domain1 Domai 95.9 0.0049 1.1E-07 53.3 2.3 24 92-115 30-53 (204)
398 PRK14251 phosphate ABC transpo 95.9 0.0048 1E-07 55.1 2.3 25 92-116 29-53 (251)
399 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0047 1E-07 55.4 2.2 25 92-116 24-48 (246)
400 COG3842 PotA ABC-type spermidi 95.9 0.0047 1E-07 58.5 2.3 23 92-114 30-52 (352)
401 COG4608 AppF ABC-type oligopep 95.9 0.005 1.1E-07 56.1 2.3 25 92-116 38-62 (268)
402 PRK13538 cytochrome c biogenes 95.9 0.005 1.1E-07 53.3 2.3 25 92-116 26-50 (204)
403 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0048 1E-07 50.7 2.0 25 92-116 25-49 (144)
404 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.9 0.0048 1E-07 54.4 2.2 24 92-115 47-70 (224)
405 PRK11247 ssuB aliphatic sulfon 95.9 0.0049 1.1E-07 55.7 2.3 25 92-116 37-61 (257)
406 cd03245 ABCC_bacteriocin_expor 95.9 0.005 1.1E-07 53.7 2.3 25 92-116 29-53 (220)
407 cd03252 ABCC_Hemolysin The ABC 95.9 0.005 1.1E-07 54.4 2.3 25 92-116 27-51 (237)
408 PRK10575 iron-hydroxamate tran 95.9 0.0044 9.6E-08 55.9 2.0 25 92-116 36-60 (265)
409 COG2884 FtsE Predicted ATPase 95.9 0.0051 1.1E-07 53.6 2.2 26 92-117 27-52 (223)
410 PHA02544 44 clamp loader, smal 95.9 0.0048 1E-07 56.8 2.2 28 94-121 44-71 (316)
411 cd03248 ABCC_TAP TAP, the Tran 95.8 0.0051 1.1E-07 53.9 2.3 25 92-116 39-63 (226)
412 TIGR02868 CydC thiol reductant 95.8 0.0046 1E-07 61.2 2.2 24 92-115 360-383 (529)
413 TIGR01425 SRP54_euk signal rec 95.8 0.0053 1.1E-07 59.7 2.5 36 93-128 100-140 (429)
414 PRK14269 phosphate ABC transpo 95.8 0.0051 1.1E-07 54.8 2.3 25 92-116 27-51 (246)
415 PRK14244 phosphate ABC transpo 95.8 0.0052 1.1E-07 54.9 2.3 25 92-116 30-54 (251)
416 PRK14261 phosphate ABC transpo 95.8 0.0051 1.1E-07 55.0 2.2 24 92-115 31-54 (253)
417 PRK14239 phosphate transporter 95.8 0.005 1.1E-07 54.9 2.2 24 92-115 30-53 (252)
418 PRK13648 cbiO cobalt transport 95.8 0.0051 1.1E-07 55.7 2.3 25 92-116 34-58 (269)
419 KOG1969 DNA replication checkp 95.8 0.0042 9.1E-08 63.3 1.8 34 91-124 324-357 (877)
420 PRK15056 manganese/iron transp 95.8 0.005 1.1E-07 55.9 2.2 25 92-116 32-56 (272)
421 PRK11831 putative ABC transpor 95.8 0.005 1.1E-07 55.8 2.2 25 92-116 32-56 (269)
422 CHL00131 ycf16 sulfate ABC tra 95.8 0.0047 1E-07 55.1 2.0 24 92-115 32-55 (252)
423 PRK11034 clpA ATP-dependent Cl 95.8 0.0045 9.8E-08 64.2 2.1 28 95-122 490-517 (758)
424 PRK14245 phosphate ABC transpo 95.8 0.0053 1.1E-07 54.8 2.3 24 92-115 28-51 (250)
425 PRK14956 DNA polymerase III su 95.8 0.0052 1.1E-07 60.5 2.4 27 94-120 41-67 (484)
426 PRK13645 cbiO cobalt transport 95.8 0.0052 1.1E-07 56.3 2.2 26 92-117 36-61 (289)
427 COG2255 RuvB Holliday junction 95.8 0.0048 1.1E-07 56.7 2.0 29 93-121 52-80 (332)
428 COG1120 FepC ABC-type cobalami 95.8 0.0049 1.1E-07 56.0 2.0 36 92-127 27-66 (258)
429 PRK13638 cbiO cobalt transport 95.8 0.0049 1.1E-07 55.8 2.1 25 92-116 26-50 (271)
430 PRK12402 replication factor C 95.8 0.0055 1.2E-07 56.7 2.4 24 95-118 38-61 (337)
431 PLN03046 D-glycerate 3-kinase; 95.8 0.006 1.3E-07 59.1 2.7 26 92-117 211-236 (460)
432 PRK14235 phosphate transporter 95.8 0.0054 1.2E-07 55.5 2.3 25 92-116 44-68 (267)
433 PRK14237 phosphate transporter 95.8 0.0055 1.2E-07 55.5 2.3 26 92-117 45-70 (267)
434 PRK14253 phosphate ABC transpo 95.8 0.0056 1.2E-07 54.6 2.3 25 92-116 28-52 (249)
435 PRK14240 phosphate transporter 95.8 0.0055 1.2E-07 54.7 2.2 24 92-115 28-51 (250)
436 cd03244 ABCC_MRP_domain2 Domai 95.8 0.0056 1.2E-07 53.4 2.3 24 92-115 29-52 (221)
437 cd03253 ABCC_ATM1_transporter 95.8 0.0056 1.2E-07 54.0 2.3 25 92-116 26-50 (236)
438 cd03267 ABC_NatA_like Similar 95.8 0.0056 1.2E-07 54.3 2.2 25 92-116 46-70 (236)
439 PF03029 ATP_bind_1: Conserved 95.8 0.0046 9.9E-08 55.5 1.7 22 98-119 1-22 (238)
440 cd03294 ABC_Pro_Gly_Bertaine T 95.8 0.0055 1.2E-07 55.6 2.2 26 92-117 49-74 (269)
441 cd03290 ABCC_SUR1_N The SUR do 95.8 0.0057 1.2E-07 53.4 2.3 25 92-116 26-50 (218)
442 PRK10619 histidine/lysine/argi 95.8 0.0056 1.2E-07 54.9 2.3 26 92-117 30-55 (257)
443 PF06068 TIP49: TIP49 C-termin 95.8 0.0059 1.3E-07 58.1 2.4 32 91-122 48-81 (398)
444 PRK14259 phosphate ABC transpo 95.8 0.0056 1.2E-07 55.5 2.3 25 92-116 38-62 (269)
445 PRK11022 dppD dipeptide transp 95.8 0.006 1.3E-07 57.1 2.5 26 92-117 32-57 (326)
446 TIGR00176 mobB molybdopterin-g 95.8 0.006 1.3E-07 51.1 2.2 24 95-118 1-24 (155)
447 PRK14273 phosphate ABC transpo 95.8 0.0057 1.2E-07 54.7 2.3 25 92-116 32-56 (254)
448 TIGR02237 recomb_radB DNA repa 95.8 0.0077 1.7E-07 52.1 3.0 37 90-126 9-50 (209)
449 cd03369 ABCC_NFT1 Domain 2 of 95.8 0.0059 1.3E-07 52.9 2.3 24 92-115 33-56 (207)
450 COG1134 TagH ABC-type polysacc 95.8 0.0052 1.1E-07 55.2 1.9 39 76-117 39-77 (249)
451 PRK13649 cbiO cobalt transport 95.8 0.0055 1.2E-07 55.7 2.2 25 92-116 32-56 (280)
452 PRK14268 phosphate ABC transpo 95.8 0.0058 1.2E-07 54.9 2.3 25 92-116 37-61 (258)
453 PRK10867 signal recognition pa 95.8 0.007 1.5E-07 58.9 3.0 36 93-128 100-141 (433)
454 PRK11614 livF leucine/isoleuci 95.7 0.0053 1.2E-07 54.3 2.0 25 92-116 30-54 (237)
455 PRK10418 nikD nickel transport 95.7 0.0058 1.3E-07 54.8 2.2 25 92-116 28-52 (254)
456 PRK09544 znuC high-affinity zi 95.7 0.0059 1.3E-07 54.9 2.3 25 92-116 29-53 (251)
457 PRK13632 cbiO cobalt transport 95.7 0.0058 1.3E-07 55.4 2.2 25 92-116 34-58 (271)
458 PRK14974 cell division protein 95.7 0.0069 1.5E-07 57.1 2.7 36 92-127 139-179 (336)
459 TIGR03499 FlhF flagellar biosy 95.7 0.007 1.5E-07 55.6 2.7 36 92-127 193-235 (282)
460 PRK14270 phosphate ABC transpo 95.7 0.0061 1.3E-07 54.4 2.3 24 92-115 29-52 (251)
461 cd03213 ABCG_EPDR ABCG transpo 95.7 0.006 1.3E-07 52.5 2.2 26 92-117 34-59 (194)
462 PRK14238 phosphate transporter 95.7 0.0062 1.3E-07 55.3 2.3 26 92-117 49-74 (271)
463 KOG0738 AAA+-type ATPase [Post 95.7 0.0048 1E-07 58.9 1.6 31 94-124 246-276 (491)
464 TIGR03740 galliderm_ABC gallid 95.7 0.0062 1.4E-07 53.3 2.3 26 92-117 25-50 (223)
465 PF00931 NB-ARC: NB-ARC domain 95.7 0.0066 1.4E-07 54.7 2.5 26 92-117 18-43 (287)
466 PF02224 Cytidylate_kin: Cytid 95.7 0.038 8.1E-07 46.6 6.8 83 157-258 56-157 (157)
467 PRK14260 phosphate ABC transpo 95.7 0.0063 1.4E-07 54.7 2.3 25 92-116 32-56 (259)
468 cd03236 ABC_RNaseL_inhibitor_d 95.7 0.0062 1.3E-07 55.0 2.3 26 91-116 24-49 (255)
469 PRK13647 cbiO cobalt transport 95.7 0.0064 1.4E-07 55.3 2.4 25 92-116 30-54 (274)
470 PRK10419 nikE nickel transport 95.7 0.0061 1.3E-07 55.3 2.2 25 92-116 37-61 (268)
471 PRK09473 oppD oligopeptide tra 95.7 0.0068 1.5E-07 56.9 2.6 26 92-117 41-66 (330)
472 TIGR02769 nickel_nikE nickel i 95.7 0.0062 1.3E-07 55.0 2.2 25 92-116 36-60 (265)
473 PRK13341 recombination factor 95.7 0.0061 1.3E-07 63.0 2.4 33 93-125 52-84 (725)
474 PRK13531 regulatory ATPase Rav 95.7 0.0071 1.5E-07 59.6 2.7 28 91-118 37-64 (498)
475 PRK14272 phosphate ABC transpo 95.7 0.0064 1.4E-07 54.2 2.3 26 92-117 29-54 (252)
476 PRK15093 antimicrobial peptide 95.7 0.0064 1.4E-07 57.0 2.3 26 92-117 32-57 (330)
477 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.0064 1.4E-07 52.6 2.2 25 92-116 25-49 (200)
478 TIGR01618 phage_P_loop phage n 95.7 0.0039 8.5E-08 55.4 0.8 32 93-126 12-43 (220)
479 PRK09984 phosphonate/organopho 95.7 0.0064 1.4E-07 54.7 2.2 26 92-117 29-54 (262)
480 PRK09580 sufC cysteine desulfu 95.7 0.0059 1.3E-07 54.3 2.0 25 92-116 26-50 (248)
481 cd04163 Era Era subfamily. Er 95.7 0.007 1.5E-07 48.7 2.3 23 93-115 3-25 (168)
482 TIGR03411 urea_trans_UrtD urea 95.7 0.0065 1.4E-07 53.8 2.2 25 92-116 27-51 (242)
483 PRK13651 cobalt transporter AT 95.7 0.0065 1.4E-07 56.4 2.3 24 92-115 32-55 (305)
484 PRK14249 phosphate ABC transpo 95.7 0.0066 1.4E-07 54.2 2.3 26 92-117 29-54 (251)
485 PRK14243 phosphate transporter 95.7 0.0066 1.4E-07 54.9 2.3 24 92-115 35-58 (264)
486 PRK11889 flhF flagellar biosyn 95.7 0.007 1.5E-07 58.3 2.5 36 93-128 241-281 (436)
487 cd03283 ABC_MutS-like MutS-lik 95.7 0.0067 1.4E-07 52.8 2.2 23 93-115 25-47 (199)
488 KOG0745 Putative ATP-dependent 95.7 0.0056 1.2E-07 59.2 1.9 32 91-122 224-255 (564)
489 PRK06645 DNA polymerase III su 95.7 0.0066 1.4E-07 60.3 2.4 28 93-120 43-70 (507)
490 PRK14236 phosphate transporter 95.7 0.0067 1.5E-07 55.0 2.3 25 92-116 50-74 (272)
491 PRK13548 hmuV hemin importer A 95.7 0.0065 1.4E-07 54.7 2.2 25 92-116 27-51 (258)
492 PRK11308 dppF dipeptide transp 95.7 0.0067 1.4E-07 56.8 2.3 26 92-117 40-65 (327)
493 PRK14722 flhF flagellar biosyn 95.6 0.0074 1.6E-07 57.7 2.7 36 92-127 136-178 (374)
494 PRK13547 hmuV hemin importer A 95.6 0.0065 1.4E-07 55.4 2.2 26 92-117 26-51 (272)
495 cd03231 ABC_CcmA_heme_exporter 95.6 0.007 1.5E-07 52.3 2.2 25 92-116 25-49 (201)
496 TIGR00968 3a0106s01 sulfate AB 95.6 0.007 1.5E-07 53.7 2.3 25 92-116 25-49 (237)
497 KOG0737 AAA+-type ATPase [Post 95.6 0.006 1.3E-07 57.7 1.9 42 92-133 126-169 (386)
498 TIGR03167 tRNA_sel_U_synt tRNA 95.6 0.016 3.6E-07 54.0 4.7 103 94-202 128-239 (311)
499 cd03116 MobB Molybdenum is an 95.6 0.0092 2E-07 50.3 2.8 26 94-119 2-27 (159)
500 cd02034 CooC The accessory pro 95.6 0.0076 1.6E-07 48.1 2.2 31 96-126 2-37 (116)
No 1
>PLN02199 shikimate kinase
Probab=100.00 E-value=8.2e-38 Score=284.62 Aligned_cols=197 Identities=32% Similarity=0.560 Sum_probs=180.3
Q ss_pred eeeccCCchhhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhh
Q 023776 70 KVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY 149 (277)
Q Consensus 70 ~~~~~d~~~~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~f 149 (277)
.+.+||+. .||++++++.+++.+.+|+|+|++|||||||++.||+.||++|+|+|.++++.+.+.++.++|..+|+..|
T Consensus 80 ~~~~~de~-~Lk~~a~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~F 158 (303)
T PLN02199 80 SVYPFDED-ILKRKAEEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFF 158 (303)
T ss_pred CCCCCCHH-HHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHH
Confidence 34488998 49999999999999999999999999999999999999999999999999997433889999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-c-----CCCC----Ch-------hHH
Q 023776 150 QQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-----HSGF----PE-------SEL 212 (277)
Q Consensus 150 r~~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~-----~R~l----~~-------~~l 212 (277)
++.|.++++++....++||++|||+++.+.||.+|+.|++|||++|+|++.+| . .||+ +. +.+
T Consensus 159 R~~E~e~L~~L~~~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L 238 (303)
T PLN02199 159 RGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRL 238 (303)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHH
Confidence 99999999999877789999999999999999999889999999999999999 2 3775 11 468
Q ss_pred HHHHHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHH
Q 023776 213 FALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 267 (277)
Q Consensus 213 ~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~ 267 (277)
.+++++|.|.|+.||++|+++++|.++||.||++.+|++++.+|++.+.++++..
T Consensus 239 ~~L~~~R~plY~~Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~~ 293 (303)
T PLN02199 239 SAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293 (303)
T ss_pred HHHHHHHHHHHHhCCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999999999999843
No 2
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-34 Score=241.45 Aligned_cols=158 Identities=32% Similarity=0.489 Sum_probs=143.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~ 172 (277)
.++|+|+|+|||||||+|+.||+.|+++|+|+|.++++..| ++++++|..+|+..||+.|.++++++...++.||++||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g-~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGG 80 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTG-MSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGG 80 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHC-cCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCC
Confidence 46899999999999999999999999999999999999999 99999999999999999999999999988789999999
Q ss_pred CccccchhhHHhh-cccEEEEecCCcceecc----cCCCC-----ChhHHHHHHHHHhhcccc-cceeeeHHHHHhHhCC
Q 023776 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM----DHSGF-----PESELFALYKEMRDGYAT-ADVTVSLQKVASQLGY 241 (277)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R----~~R~l-----~~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~~ 241 (277)
|+++.++++.+|+ ++++|||++|+|++.+| ..||+ +.+.+.+++++|.|+|+. ||++++++
T Consensus 81 G~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~a~~~~~~~-------- 152 (172)
T COG0703 81 GAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREVADFIIDTD-------- 152 (172)
T ss_pred ccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHhCcEEecCC--------
Confidence 9999999999998 78999999999999999 35775 236799999999999986 89999873
Q ss_pred CcccccccchhhHHHHHHHHHHH
Q 023776 242 DDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 242 ~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+ .+++++.+|++.+....
T Consensus 153 ----~-~~~~v~~~i~~~l~~~~ 170 (172)
T COG0703 153 ----D-RSEEVVEEILEALEGSL 170 (172)
T ss_pred ----C-CcHHHHHHHHHHHHHhc
Confidence 3 33899999998887653
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=224.67 Aligned_cols=161 Identities=23% Similarity=0.320 Sum_probs=146.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEe
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~ 170 (277)
.++.+|+|+|+|||||||+|+.||+.||+.|+|+|.++++.+| ++++++|..+|+..|++.|.+++++++.....||++
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g-~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~ 86 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTG-KSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISL 86 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHh-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence 3578999999999999999999999999999999999999998 899999999999999999999999998777899999
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc---cCCCC-----ChhHHHHHHHHHhhcccccceeeeHHHHHhHhCC
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM---DHSGF-----PESELFALYKEMRDGYATADVTVSLQKVASQLGY 241 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R---~~R~l-----~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~ 241 (277)
|+|++++++++..++ .+.+|||++|++++.+| ..||+ +.+.+.+++++|.|.|+.||++|++
T Consensus 87 GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~a~~~i~t--------- 157 (182)
T PRK13948 87 GGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQATIHVST--------- 157 (182)
T ss_pred CCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEEC---------
Confidence 999999999998887 78999999999999999 45665 2357889999999999889999987
Q ss_pred CcccccccchhhHHHHHHHHHHH
Q 023776 242 DDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 242 ~dts~~t~eeva~~Il~~i~~~~ 264 (277)
++.++++++++|.+.+...+
T Consensus 158 ---~~~~~~ei~~~i~~~l~~~~ 177 (182)
T PRK13948 158 ---DGRRSEEVVEEIVEKLWAWA 177 (182)
T ss_pred ---CCCCHHHHHHHHHHHHHHHh
Confidence 47999999999999998754
No 4
>PRK00625 shikimate kinase; Provisional
Probab=99.95 E-value=7.3e-28 Score=205.65 Aligned_cols=160 Identities=24% Similarity=0.375 Sum_probs=137.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC---hhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEe
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG---ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~---~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~ 170 (277)
++|+|+|+|||||||+|+.||+.+|++|+|+|.++++.+|+ .+++++|+..|+..|++.|.++++++.. ...||++
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~ 79 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence 36999999999999999999999999999999999988772 2789999999999999999999988864 5679999
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc-cCCCCC-----hhHHHHHHHHHhhcccc-cceeeeHHHHHhHhCCC
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFP-----ESELFALYKEMRDGYAT-ADVTVSLQKVASQLGYD 242 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R~l~-----~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~~~ 242 (277)
|+|.+..++++..++ .+.+|||++|++++.+| ..||.+ .+.+.+++++|.+.|+. ||++|++++++
T Consensus 80 GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~ad~~i~~~~~~------ 153 (173)
T PRK00625 80 GGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSIADYIFSLDHVA------ 153 (173)
T ss_pred CCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHHCCEEEeCCCcc------
Confidence 999999999999887 67999999999999999 677652 36788899999999986 99999987544
Q ss_pred cccccccchhhHHHHHHH
Q 023776 243 DLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 243 dts~~t~eeva~~Il~~i 260 (277)
.|++.++-++++.+...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 154 ETSSESLMRACQSFCTLL 171 (173)
T ss_pred cCCCCCHHHHHHHHHHHh
Confidence 566777777777666543
No 5
>PRK13949 shikimate kinase; Provisional
Probab=99.95 E-value=8.8e-28 Score=204.30 Aligned_cols=153 Identities=21% Similarity=0.351 Sum_probs=135.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
..|+|+|+|||||||+|+.||+.+|++++|.|.++++.++ .++.++|.+.|+..|++.|.++++++....+.||++|+|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~-~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFH-KTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHC-ccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 4799999999999999999999999999999999999888 788999999999999999999999987666789999999
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-c----CCCC----Chh----HHHHHHHHHhhcccccceeeeHHHHHhHh
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D----HSGF----PES----ELFALYKEMRDGYATADVTVSLQKVASQL 239 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~----~R~l----~~~----~l~~~~~~r~~~y~~Ad~vId~~~~a~~~ 239 (277)
++..+.++.+|+ .+++|||++|++++.+| . .||+ +.+ .+.+++++|.+.|+.||++||++
T Consensus 81 ~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~------ 154 (169)
T PRK13949 81 APCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNAD------ 154 (169)
T ss_pred ccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECC------
Confidence 999989999887 79999999999999998 2 4664 112 46678999999998899999874
Q ss_pred CCCcccccccchhhHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKE 259 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~ 259 (277)
+.++++++.+|++.
T Consensus 155 ------~~~~~e~~~~I~~~ 168 (169)
T PRK13949 155 ------KLEDESQIEQLVQR 168 (169)
T ss_pred ------CCCHHHHHHHHHHh
Confidence 78999999999875
No 6
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.94 E-value=1.9e-27 Score=235.15 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=143.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
+.+.|+|+|+|||||||+|+.||+.||++|+|+|.++++..| ++++++|.++|+..||+.|.+++++++...++||+||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g-~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~G 83 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIG-MSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLG 83 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHC-cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECC
Confidence 457899999999999999999999999999999999999998 8999999999999999999999999876667899999
Q ss_pred CCccccchhhHHh----h-cccEEEEecCCcceecc----cCCCC----ChhHHHHHHHHHhhcccc-cceeeeHHHHHh
Q 023776 172 NGAVQSSANLALL----R-HGISLWIDVPPGMVARM----DHSGF----PESELFALYKEMRDGYAT-ADVTVSLQKVAS 237 (277)
Q Consensus 172 ~g~v~~~~~~~~L----~-~~~vV~L~~~~e~l~~R----~~R~l----~~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~ 237 (277)
||++++++|+.+| + .+++|||++|++++.+| ..||+ +.+.+.++|++|.|.|+. ||++|++
T Consensus 84 GG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~Ad~~i~~----- 158 (542)
T PRK14021 84 GGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQVANVHVHT----- 158 (542)
T ss_pred CchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhCCEEEEC-----
Confidence 9999999999865 3 57999999999999999 35775 246789999999999986 9999987
Q ss_pred HhCCCcccccccchhhHHHHHHHHH
Q 023776 238 QLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 238 ~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 159 -------~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 159 -------RGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred -------CCCCHHHHHHHHHHHHHh
Confidence 478999999999998864
No 7
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.94 E-value=5.1e-27 Score=200.01 Aligned_cols=158 Identities=24% Similarity=0.385 Sum_probs=140.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
+..+|+|+|++||||||+++.|++.+|+.++|+|..+++..| .++.++|...|+..|+..|.++++.+...+..|+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g-~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~g 81 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATG 81 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhC-cCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 356899999999999999999999999999999999988887 7888999999999999999999999887778999999
Q ss_pred CCccccchhhHHhh-cccEEEEecCCcceecc----cCCCCC-----hhHHHHHHHHHhhcccc-cceeeeHHHHHhHhC
Q 023776 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM----DHSGFP-----ESELFALYKEMRDGYAT-ADVTVSLQKVASQLG 240 (277)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R----~~R~l~-----~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~ 240 (277)
+|+++.+.++.+|+ .+.+|||++|.+++.+| ..||+- .+.+..++++|.|.|+. ||++||+
T Consensus 82 gg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~Ad~~idt-------- 153 (172)
T PRK05057 82 GGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEIADVTIRT-------- 153 (172)
T ss_pred CchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhCCEEEEC--------
Confidence 99999999999886 78999999999999998 246641 24678899999999986 9999987
Q ss_pred CCcccccccchhhHHHHHHHHH
Q 023776 241 YDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 241 ~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|+++++.
T Consensus 154 ----~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 154 ----DDQSAKVVANQIIHMLES 171 (172)
T ss_pred ----CCCCHHHHHHHHHHHHhh
Confidence 589999999999988753
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.94 E-value=7.9e-27 Score=200.56 Aligned_cols=164 Identities=29% Similarity=0.401 Sum_probs=143.8
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEE
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VI 168 (277)
+.+.+++|+|+|++||||||+|+.||+.||++|+|+|.++++..| .++.+++..+|+..|++.|.+++.++...+.+||
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g-~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi 84 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAAR-MTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVL 84 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 445678999999999999999999999999999999999988887 7888899999999999999999999887778999
Q ss_pred EecCCccccchhhHHhh-cccEEEEecCCcceecc-c---CCCC-----ChhHHHHHHHHHhhcccccceeeeHHHHHhH
Q 023776 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-D---HSGF-----PESELFALYKEMRDGYATADVTVSLQKVASQ 238 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~---~R~l-----~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~ 238 (277)
++|+|.++.+.++.+++ .+++|||++|++++.+| . .||+ +.+.++++++.|.+.|..+|++|++
T Consensus 85 ~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~~dl~i~~------ 158 (184)
T PRK13946 85 ATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAEADLTVAS------ 158 (184)
T ss_pred ECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhCCEEEEC------
Confidence 99999888888999886 78999999999999998 3 3443 2356788889999999889999987
Q ss_pred hCCCcccccccchhhHHHHHHHHHHHH
Q 023776 239 LGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 239 ~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.+++++++.|+..+..+..
T Consensus 159 ------~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 159 ------RDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred ------CCCCHHHHHHHHHHHHHHhhc
Confidence 589999999999999987654
No 9
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.94 E-value=4.8e-27 Score=197.24 Aligned_cols=147 Identities=28% Similarity=0.453 Sum_probs=126.7
Q ss_pred cchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCCccccchhh
Q 023776 102 NNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANL 181 (277)
Q Consensus 102 ~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~ 181 (277)
|||||||||+.||+.||++|+|+|.++++.+| ++++++|.+.|+..|++.|.++++++....++||+||||+++.++++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g-~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~ 79 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTG-MSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENR 79 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhC-CcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHH
Confidence 79999999999999999999999999999999 89999999999999999999999999887789999999999999999
Q ss_pred HHhh-cccEEEEecCCcceecc----cCCCC--Ch---hHHHHHHHHHhhcccc-cceeeeHHHHHhHhCCCcccccccc
Q 023776 182 ALLR-HGISLWIDVPPGMVARM----DHSGF--PE---SELFALYKEMRDGYAT-ADVTVSLQKVASQLGYDDLDAVTTE 250 (277)
Q Consensus 182 ~~L~-~~~vV~L~~~~e~l~~R----~~R~l--~~---~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~~~dts~~t~e 250 (277)
++|+ .+.+|||+++++.+.+| ..||+ .. ..+.+.+.+|.+.|+. ++++|++ +..+|+
T Consensus 80 ~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~a~~~v~~------------~~~~~~ 147 (158)
T PF01202_consen 80 ELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQAADIVVDT------------DGSPPE 147 (158)
T ss_dssp HHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHHSSEEEET------------SSCHHH
T ss_pred HHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeEEEeC------------CCCCHH
Confidence 9998 88999999999999999 45664 11 2344555588999986 7899987 466779
Q ss_pred hhhHHHHHHHH
Q 023776 251 DMTLEVLKEIE 261 (277)
Q Consensus 251 eva~~Il~~i~ 261 (277)
+++++|++.|+
T Consensus 148 ~i~~~i~~~l~ 158 (158)
T PF01202_consen 148 EIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 10
>PRK13947 shikimate kinase; Provisional
Probab=99.93 E-value=7.1e-26 Score=191.09 Aligned_cols=155 Identities=26% Similarity=0.465 Sum_probs=134.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
.+|+|+|+|||||||+|+.||+.||++|+|.|.++++..| .++.++|...|+..|++.|..+++.+.....+||++|+|
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g 80 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTG-MTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG 80 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcC-CcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC
Confidence 3699999999999999999999999999999999999887 788889999999999999999999987667889999999
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-c---CCCC-----ChhHHHHHHHHHhhcccccceeeeHHHHHhHhCCCc
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D---HSGF-----PESELFALYKEMRDGYATADVTVSLQKVASQLGYDD 243 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~---~R~l-----~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~d 243 (277)
++++++++..|+ .+++|||++|++.+.+| . .||. ..+.+.+.+++|.+.|+.+|++||+
T Consensus 81 ~vl~~~~~~~l~~~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt----------- 149 (171)
T PRK13947 81 VVLNPENVVQLRKNGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDT----------- 149 (171)
T ss_pred CcCCHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEEC-----------
Confidence 999888888776 67899999999999998 3 3343 1255667788888888878999987
Q ss_pred ccccccchhhHHHHH-HHH
Q 023776 244 LDAVTTEDMTLEVLK-EIE 261 (277)
Q Consensus 244 ts~~t~eeva~~Il~-~i~ 261 (277)
++.++++++++|.+ ++.
T Consensus 150 -~~~~~~~i~~~I~~~~~~ 167 (171)
T PRK13947 150 -GDMTIDEVAEEIIKAYLK 167 (171)
T ss_pred -CCCCHHHHHHHHHHHHHh
Confidence 58999999999998 554
No 11
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.92 E-value=1.2e-24 Score=182.91 Aligned_cols=162 Identities=35% Similarity=0.550 Sum_probs=138.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEe
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~ 170 (277)
.++++|+|+|+|||||||+|+.||+.+|+.++|.|.++++..| .++.+++...|+..|++.+.+++.++....++||++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~ 80 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAG-KSIPEIFEEEGEAAFRELEEEVLAELLARHNLVIST 80 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 3578999999999999999999999999999999999998888 677788888899999999989999888666679999
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc-c---CCCC-----ChhHHHHHHHHHhhcccc-cceeeeHHHHHhHh
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-D---HSGF-----PESELFALYKEMRDGYAT-ADVTVSLQKVASQL 239 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~---~R~l-----~~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~ 239 (277)
|++.++...++..|+ .+++|||++|++.+.+| . .|+. ..+.+..++.++.+.|.. +|++||+
T Consensus 81 g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~idt------- 153 (175)
T PRK00131 81 GGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEEVADITVET------- 153 (175)
T ss_pred CCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHhhcCeEEeC-------
Confidence 988888888888885 67899999999999998 3 2343 124567778888887765 8999987
Q ss_pred CCCcccccccchhhHHHHHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.+++++++.|.+.|+.+.+
T Consensus 154 -----~~~~~~e~~~~I~~~v~~~~~ 174 (175)
T PRK00131 154 -----DGRSPEEVVNEILEKLEAAWR 174 (175)
T ss_pred -----CCCCHHHHHHHHHHHHHhhcc
Confidence 589999999999999987764
No 12
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.90 E-value=1.7e-23 Score=176.89 Aligned_cols=153 Identities=22% Similarity=0.403 Sum_probs=130.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|++||||||+|+.||+.+|++++|.|.+++...| .++.+++.+.|+..|++.|.++++.+. ....||++|+|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g-~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSN-MTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 5799999999999999999999999999999999999888 788888989999999999988886653 45689999999
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-cCC------C-C---C-hhHHHHHHHHHhhcccc-cceeeeHHHHHhHh
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DHS------G-F---P-ESELFALYKEMRDGYAT-ADVTVSLQKVASQL 239 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R------~-l---~-~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~ 239 (277)
+++...++.+++ .+++|||++|++++.+| ..| | + + .+.+.+.+++|.+.|.. ++++||+
T Consensus 81 ~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~------- 153 (171)
T PRK03731 81 IILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDA------- 153 (171)
T ss_pred ccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcC-------
Confidence 999888888887 78999999999999998 332 2 1 1 25567788888888875 7899986
Q ss_pred CCCcccccccchhhHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~ 261 (277)
+.++++++.+|...+.
T Consensus 154 ------~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 154 ------TQPPSQVVSEILSALA 169 (171)
T ss_pred ------CCCHHHHHHHHHHHHh
Confidence 4789999999998875
No 13
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.89 E-value=3.1e-23 Score=192.08 Aligned_cols=161 Identities=22% Similarity=0.344 Sum_probs=139.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhh-cCcEEEEe
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSS-MGRLVVCA 170 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~-~~~~VIa~ 170 (277)
++.+|+|+|++||||||+|+.||+.||++|+|.|..+++..| .++.+++..+|+..|+..|.+++.+++. ...+||++
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G-~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~ 210 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAG-LSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLAT 210 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhC-CCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEEC
Confidence 578999999999999999999999999999999999999888 8888999999999999999998888765 34589999
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc-cC----CCC-----ChhHHHHHHHHHhhcccccceeeeHHHHHhHh
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DH----SGF-----PESELFALYKEMRDGYATADVTVSLQKVASQL 239 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~----R~l-----~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~ 239 (277)
|+|++..+.++..+. .+++|||++|++++.+| .. ||+ +.+.+.++++.|.++|+.+|++||+
T Consensus 211 Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~y~~ad~~I~t------- 283 (309)
T PRK08154 211 GGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPLYARADAVVDT------- 283 (309)
T ss_pred CCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCEEEEC-------
Confidence 999888877777665 67899999999999998 32 443 1367888899999999989999987
Q ss_pred CCCcccccccchhhHHHHHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.+++++++.|.+.+..++.
T Consensus 284 -----~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 284 -----SGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred -----CCCCHHHHHHHHHHHHHHHhc
Confidence 478999999999999987665
No 14
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.88 E-value=1.3e-22 Score=198.35 Aligned_cols=149 Identities=23% Similarity=0.399 Sum_probs=131.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
++|+|+|+|||||||+|+.||+.||++++|+|.++++..| +++.++|.++|+..|++.|.++++++....+.||++|+|
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g-~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg 79 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREG-RSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG 79 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcC-CCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc
Confidence 3699999999999999999999999999999999999888 889999999999999999999999987667789999999
Q ss_pred ccccchhhHHhhcccEEEEecCCcceecc---cCCCCC---hhHHHHHHHHHhhcccccceeeeHHHHHhHhCCCccccc
Q 023776 174 AVQSSANLALLRHGISLWIDVPPGMVARM---DHSGFP---ESELFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAV 247 (277)
Q Consensus 174 ~v~~~~~~~~L~~~~vV~L~~~~e~l~~R---~~R~l~---~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~ 247 (277)
+++++++++.++.+.+|||++|++++.+| .+||+- .+.+.+++++|.+.|++. ++||+ ++.
T Consensus 80 vv~~~~~r~~l~~~~vI~L~as~e~l~~Rl~~~~RPLl~~~~e~l~~L~~~R~~lY~~~-~~IDt------------~~~ 146 (488)
T PRK13951 80 VVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEF-RGIDT------------SKL 146 (488)
T ss_pred cccChHHHHHHhcCeEEEEECCHHHHHHHhccCCCCCccccHHHHHHHHHHHHHHHhcc-cEEEC------------CCC
Confidence 99999999998866799999999999999 356642 367888999999999754 46766 578
Q ss_pred ccchhhHHH
Q 023776 248 TTEDMTLEV 256 (277)
Q Consensus 248 t~eeva~~I 256 (277)
++++++.+|
T Consensus 147 s~~e~~~~i 155 (488)
T PRK13951 147 NEWETTALV 155 (488)
T ss_pred CHHHHHHHH
Confidence 888877776
No 15
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.88 E-value=2.1e-22 Score=166.34 Aligned_cols=138 Identities=33% Similarity=0.500 Sum_probs=117.7
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g~ 174 (277)
+|+|+|+|||||||+|+.||+.+|+.++|.|.++++..| .++.+++...|+..|+..+.+++..+...+++||++|+|.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~ 79 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAG-MSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGA 79 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcC-CCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCc
Confidence 489999999999999999999999999999999999888 6777888888999999998888888877778999998888
Q ss_pred cccchhhHHhh-cccEEEEecCCcceecc-c---CCCC----ChhHHHHHHHHHhhcccc-cceeeeHH
Q 023776 175 VQSSANLALLR-HGISLWIDVPPGMVARM-D---HSGF----PESELFALYKEMRDGYAT-ADVTVSLQ 233 (277)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~---~R~l----~~~~l~~~~~~r~~~y~~-Ad~vId~~ 233 (277)
+.+..++..+. .+++|||++|.+.+.+| . .||. +.+.+..++.+|.+.|.. ||++||++
T Consensus 80 i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~ad~~i~~~ 148 (154)
T cd00464 80 VLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREVADLTIDTD 148 (154)
T ss_pred cCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcEEEECC
Confidence 88776655544 78999999999999998 3 3443 224688999999999986 99999884
No 16
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.68 E-value=2.8e-17 Score=139.65 Aligned_cols=151 Identities=17% Similarity=0.203 Sum_probs=100.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHH-----HHHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE-----TEVLKQL 160 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e-----~~vl~~l 160 (277)
-++..|+|+|++||||||+|+.|++.|+ ..++|.|.+.+. ++ ..|...+...+ ..+.+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~-~~---------~~~~~~~~~~~~~~~~~~l~~~l 74 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI-LG---------HYGYDKQSRIEMALKRAKLAKFL 74 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh-cC---------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999986 567887776432 22 11111111111 1122223
Q ss_pred hhcCcEEEEecCCcc--ccchhhHHhhcccEEEEecCCcceecccCCCC----ChhHHHHHHHHHhhcccc-cceeeeHH
Q 023776 161 SSMGRLVVCAGNGAV--QSSANLALLRHGISLWIDVPPGMVARMDHSGF----PESELFALYKEMRDGYAT-ADVTVSLQ 233 (277)
Q Consensus 161 ~~~~~~VIa~g~g~v--~~~~~~~~L~~~~vV~L~~~~e~l~~R~~R~l----~~~~l~~~~~~r~~~y~~-Ad~vId~~ 233 (277)
...+..||+++.+.+ +...++..+...++|||++|++++.+|..||+ ..+.+.+++..|.+.|+. ||++|+++
T Consensus 75 ~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~Ad~vI~~~ 154 (176)
T PRK05541 75 ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPKADLVIDNS 154 (176)
T ss_pred HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCCCCEEEeCC
Confidence 345567888776543 22223333444578999999999999954543 345677788888888864 99999983
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
...++++++++|.+.++.
T Consensus 155 -----------~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 155 -----------CRTSLDEKVDLILNKLKL 172 (176)
T ss_pred -----------CCCCHHHHHHHHHHHHHH
Confidence 125888999888887754
No 17
>PRK03839 putative kinase; Provisional
Probab=99.63 E-value=3.5e-16 Score=133.34 Aligned_cols=143 Identities=17% Similarity=0.284 Sum_probs=94.2
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g~ 174 (277)
.|+|+|+|||||||+|+.||+.+|++|+|+|+++++. .+...+...++..|+.++..+.+.+ .... +|.+|.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~-vIidG~-- 73 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK----GIGEEKDDEMEIDFDKLAYFIEEEF-KEKN-VVLDGH-- 73 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc----CCcccCChhhhcCHHHHHHHHHHhc-cCCC-EEEEec--
Confidence 6999999999999999999999999999999988653 2234455556667777776655433 2223 444442
Q ss_pred cccchhhHHhhcccEEEEecCCcceecc-cCCCCChhHH-HHHHHHHh-----hccc-c-cceeeeHHHHHhHhCCCccc
Q 023776 175 VQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESEL-FALYKEMR-----DGYA-T-ADVTVSLQKVASQLGYDDLD 245 (277)
Q Consensus 175 v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~l~~~~l-~~~~~~r~-----~~y~-~-Ad~vId~~~~a~~~~~~dts 245 (277)
. ...+..+++|||+++++++.+| ..|+.....+ .....+.. ..|. . ..++||+ +
T Consensus 74 ~-----~~l~~~~~vi~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~Id~------------~ 136 (180)
T PRK03839 74 L-----SHLLPVDYVIVLRAHPKIIKERLKERGYSKKKILENVEAELVDVCLCEALEEKEKVIEVDT------------T 136 (180)
T ss_pred c-----ccccCCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEC------------C
Confidence 1 1122368899999999999999 5554322111 11111111 1122 1 3466765 4
Q ss_pred ccccchhhHHHHHHHHH
Q 023776 246 AVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 246 ~~t~eeva~~Il~~i~~ 262 (277)
+.++++++.+|.+.+..
T Consensus 137 ~~s~eev~~~I~~~l~~ 153 (180)
T PRK03839 137 GKTPEEVVEEILELIKS 153 (180)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 68999999999988864
No 18
>PRK04182 cytidylate kinase; Provisional
Probab=99.63 E-value=3.5e-16 Score=132.15 Aligned_cols=152 Identities=17% Similarity=0.226 Sum_probs=94.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhhh---hHHHHHHHHHhh-hcCcEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGY---QQAETEVLKQLS-SMGRLV 167 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~f---r~~e~~vl~~l~-~~~~~V 167 (277)
++|+|+|++||||||+|+.||+.||++++|+|+++++... +.++.++. ..++..+ +..+.. +..+. ..+.+|
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~V 78 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFN-KYAEEDPEIDKEIDRR-QLEIAEKEDNVV 78 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHH-HHhhcCchHHHHHHHH-HHHHHhcCCCEE
Confidence 4799999999999999999999999999998876655332 14444443 2333332 222222 23343 334455
Q ss_pred EEec-CCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhH----HHHH-----------HHHHhhccccccee
Q 023776 168 VCAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESE----LFAL-----------YKEMRDGYATADVT 229 (277)
Q Consensus 168 Ia~g-~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~----l~~~-----------~~~r~~~y~~Ad~v 229 (277)
+... .+.+..+ .++++|||++|++++.+| ..| +.+... +... +..+.+.|..+|++
T Consensus 79 i~g~~~~~~~~~------~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~~ 152 (180)
T PRK04182 79 LEGRLAGWMAKD------YADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDLSIYDLV 152 (180)
T ss_pred EEEeecceEecC------CCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence 5321 2222210 157899999999999999 433 233221 1111 11111223458999
Q ss_pred eeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 230 VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 230 Id~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
||+ ++.+++++++.|.+.+.....
T Consensus 153 idt------------~~~~~~~~~~~I~~~~~~~~~ 176 (180)
T PRK04182 153 INT------------SRWDPEGVFDIILTAIDKLLK 176 (180)
T ss_pred EEC------------CCCCHHHHHHHHHHHHHHHhc
Confidence 987 589999999999999976544
No 19
>PRK09169 hypothetical protein; Validated
Probab=99.63 E-value=6.5e-16 Score=166.65 Aligned_cols=139 Identities=12% Similarity=-0.002 Sum_probs=123.3
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEe
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~ 170 (277)
+....|+|+|++|+|||||++.|+..|++.|+|+|..+++..| ++|.++|..+| .|++.|...+..++. ...||++
T Consensus 2108 L~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~G-rkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLST 2183 (2316)
T PRK09169 2108 LGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIG-KKIARIQALRG--LSPEQAAARVRDALR-WEVVLPA 2183 (2316)
T ss_pred HhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhC-CCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEeC
Confidence 5678999999999999999999999999999999999999998 89999999999 999999999998875 6799999
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc----cCCCC----C--------hhHHHHHHHHHhhcccc-cceeeeH
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM----DHSGF----P--------ESELFALYKEMRDGYAT-ADVTVSL 232 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R----~~R~l----~--------~~~l~~~~~~r~~~y~~-Ad~vId~ 232 (277)
|+|++..++++..|+ +|++||+..+.+++.+| .+||+ . .....+++.+|.+.|+. +|+.|++
T Consensus 2184 GGGav~~~enr~~L~~~GlvV~L~an~~tl~~Rty~g~NRPLL~~~~~~FEiQFHT~esl~Lk~eRhpLYEqvADl~V~~ 2263 (2316)
T PRK09169 2184 EGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYAGLNVNLRTAAGLDFEIQFHTADSLRTKNKTHKLYEKLQDLEVAP 2263 (2316)
T ss_pred CCCcccCHHHHHHHHHCCEEEEEECCHHHHHHHhccCCCCccccCCCCccchhccHHHHHHHHHHhHHHHHHhcCccccc
Confidence 999999999999997 89999999999999998 35664 1 14455678889999975 9999987
Q ss_pred H
Q 023776 233 Q 233 (277)
Q Consensus 233 ~ 233 (277)
+
T Consensus 2264 ~ 2264 (2316)
T PRK09169 2264 A 2264 (2316)
T ss_pred C
Confidence 3
No 20
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.63 E-value=2.9e-16 Score=134.93 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=104.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHH---------------
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL--------------- 157 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl--------------- 157 (277)
+.+|+|+|++||||||+++.|+..++..+++.|..+..... ....+.+...++..++..|...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~ 80 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS-AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI 80 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc-hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH
Confidence 57899999999999999999999888778888877655433 23333444444444544332211
Q ss_pred --HHhhhcCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-cCCC-CChhHHHHHHHHHhhcccccc-eeee
Q 023776 158 --KQLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSG-FPESELFALYKEMRDGYATAD-VTVS 231 (277)
Q Consensus 158 --~~l~~~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R~-l~~~~l~~~~~~r~~~y~~Ad-~vId 231 (277)
......+..||+.|+..+. ...+..+. ...+|||++|.+++.+| ..|+ .+.+.+..++ .+.+.|..+| ++|+
T Consensus 81 ~~~~~l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl-~r~~~~~~ad~~vi~ 158 (186)
T PRK10078 81 EIDLWLHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARL-ARAARYQPQDCHTLN 158 (186)
T ss_pred HHHHHHhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHH-HHhhhhccCCEEEEe
Confidence 2222345667776553332 23333333 45789999999999999 5553 2445666666 3455666677 6776
Q ss_pred HHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHH
Q 023776 232 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 267 (277)
Q Consensus 232 ~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~ 267 (277)
+ +.++++++++|.+.+....++|
T Consensus 159 ~-------------~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 159 N-------------DGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred C-------------CCCHHHHHHHHHHHHhhcCccc
Confidence 4 5799999999999887665544
No 21
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.62 E-value=2.1e-16 Score=157.16 Aligned_cols=148 Identities=17% Similarity=0.281 Sum_probs=102.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhh------hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHH-HHHhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEV-LKQLSSM 163 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~------~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~v-l~~l~~~ 163 (277)
-++..|+|+|+|||||||+|+.|++.|+. .++|.|.+...+.+ +..|++.++.. +..+...
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g------------e~~f~~~er~~~~~~l~~~ 457 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS------------ELGFSKEDRDLNILRIGFV 457 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC------------CCCCCHHHHHHHHHHHHHH
Confidence 35779999999999999999999999996 88999987554433 22333332221 1111111
Q ss_pred CcEEEEecCCcccc---------chhhHHhh-cc--cEEEEecCCcceecccCCCC----ChhHHHHHHHHHhhccc--c
Q 023776 164 GRLVVCAGNGAVQS---------SANLALLR-HG--ISLWIDVPPGMVARMDHSGF----PESELFALYKEMRDGYA--T 225 (277)
Q Consensus 164 ~~~VIa~g~g~v~~---------~~~~~~L~-~~--~vV~L~~~~e~l~~R~~R~l----~~~~l~~~~~~r~~~y~--~ 225 (277)
...++.+|++++++ ..+++.++ .+ ++|||++|.+++.+|..|++ ..+.+..++.+|.+.|. .
T Consensus 458 a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~ 537 (568)
T PRK05537 458 ASEITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPAN 537 (568)
T ss_pred HHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCC
Confidence 11233334333333 24566665 34 58999999999999965554 23567888888999885 4
Q ss_pred cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 226 ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 226 Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
||++||+ ++.++++++++|++.+..
T Consensus 538 Adl~IDt------------~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 538 PELVIDT------------TNVTPDECAHKILLYLEE 562 (568)
T ss_pred CcEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 8999987 468999999999988764
No 22
>PRK14532 adenylate kinase; Provisional
Probab=99.60 E-value=1.8e-15 Score=129.68 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=95.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-----ChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-----~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
+|+|+|+|||||||+|+.||+.+|+.++++|+++++... +..+.+++. .|+..+.+.-..++.+... .+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~----~~~ 76 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLP----EAE 76 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHh----CcC
Confidence 699999999999999999999999999999988877531 133455554 4655555444444433321 122
Q ss_pred ecCCccccc-----hhh----HHhh-----cccEEEEecCCcceecc-cCCC----C---Ch----hHHHHHHHHHh---
Q 023776 170 AGNGAVQSS-----ANL----ALLR-----HGISLWIDVPPGMVARM-DHSG----F---PE----SELFALYKEMR--- 220 (277)
Q Consensus 170 ~g~g~v~~~-----~~~----~~L~-----~~~vV~L~~~~e~l~~R-~~R~----l---~~----~~l~~~~~~r~--- 220 (277)
+++|++++. ... +.+. .+.+|||++|.+++.+| ..|. . .. ..+...++++.
T Consensus 77 ~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~ 156 (188)
T PRK14532 77 AAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLL 156 (188)
T ss_pred ccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344454431 111 1222 34799999999999998 4442 1 11 23344444443
Q ss_pred hcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 221 DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 221 ~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
+.|+..+..+..| .+.+++++.++|...+.
T Consensus 157 ~~y~~~~~~~~id-----------~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 157 PYYAGQGKLTEVD-----------GMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHhcCCEEEEE-----------CCCCHHHHHHHHHHHHh
Confidence 3455444444443 35899999999998875
No 23
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=4e-15 Score=123.49 Aligned_cols=152 Identities=18% Similarity=0.239 Sum_probs=105.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh-----hcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEE
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLV 167 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~-----~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~V 167 (277)
+-.|+++|++||||||+|++|+++||+.|+|+|++... +..|.++ -.++++.+...+.....+++......|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipL---nD~DR~pWL~~i~~~~~~~l~~~q~vV 88 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPL---NDDDRWPWLKKIAVELRKALASGQGVV 88 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCC---CcccccHHHHHHHHHHHHHhhcCCeEE
Confidence 35799999999999999999999999999999998633 2222222 223445555555555555666556678
Q ss_pred EEecCCccccchhhHHhhc--------------ccEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhccc-ccc-
Q 023776 168 VCAGNGAVQSSANLALLRH--------------GISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYA-TAD- 227 (277)
Q Consensus 168 Ia~g~g~v~~~~~~~~L~~--------------~~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~-~Ad- 227 (277)
++|.. +....++.|++ -.+|||.++.|++.+| .+|+ |+.+-++.+++.-++.-. +.|
T Consensus 89 lACSa---LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lleSQf~~LE~p~~~e~di 165 (191)
T KOG3354|consen 89 LACSA---LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLESQFATLEAPDADEEDI 165 (191)
T ss_pred EEhHH---HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHHHHHHhccCCCCCccce
Confidence 88753 44455555531 1579999999999999 7774 577888888876544432 234
Q ss_pred eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 228 VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 228 ~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+.|+. .+.++|++++.|.+.+..
T Consensus 166 v~isv------------~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 166 VTISV------------KTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred EEEee------------ccCCHHHHHHHHHHHHHh
Confidence 45655 358899999999887654
No 24
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=3.1e-15 Score=123.29 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=99.8
Q ss_pred eeccchHHhhhhHHHHhhhhhhhccCcchhhh-----hcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcC-cEEEEecC
Q 023776 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG-RLVVCAGN 172 (277)
Q Consensus 99 ~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~-----~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~-~~VIa~g~ 172 (277)
+|.+||||||||..||++||+.|+|.|++... +..|.++ -.++++.+...+. ..+.+....+ ..||+|.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL---~DdDR~pWL~~l~-~~~~~~~~~~~~~vi~CS- 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPL---NDDDRWPWLEALG-DAAASLAQKNKHVVIACS- 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCC---CcchhhHHHHHHH-HHHHHhhcCCCceEEecH-
Confidence 59999999999999999999999999998643 2222222 1222332222222 2233333322 3677664
Q ss_pred CccccchhhHHhh---cc-cEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhcccccc-eeeeHHHHHhHhCCCc
Q 023776 173 GAVQSSANLALLR---HG-ISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYATAD-VTVSLQKVASQLGYDD 243 (277)
Q Consensus 173 g~v~~~~~~~~L~---~~-~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~~Ad-~vId~~~~a~~~~~~d 243 (277)
.+....++.|+ .+ ..|||+.+.+.+.+| ..|. |+...++.+|+.-+++-...| ++||.
T Consensus 76 --ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi----------- 142 (161)
T COG3265 76 --ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEEPGADEDVLTIDI----------- 142 (161)
T ss_pred --HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeC-----------
Confidence 36667788887 23 579999999999999 6663 588888988887665543234 67777
Q ss_pred ccccccchhhHHHHHHHHH
Q 023776 244 LDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 244 ts~~t~eeva~~Il~~i~~ 262 (277)
+.++++++.+++.++..
T Consensus 143 --~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 143 --DQPPEEVVAQALAWLKE 159 (161)
T ss_pred --CCCHHHHHHHHHHHHhc
Confidence 47999999999999875
No 25
>PRK06762 hypothetical protein; Provisional
Probab=99.58 E-value=3.9e-15 Score=125.12 Aligned_cols=149 Identities=14% Similarity=0.117 Sum_probs=96.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh--hhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEe
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCA 170 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L--g~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~ 170 (277)
+++|+|+|+|||||||+|+.|++.+ ++.+++.|.+.....+.. ...+....... ....+.....+..||..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~------~~~~~~~~~~~-~~~~~~~~~~g~~vild 74 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVK------DGPGNLSIDLI-EQLVRYGLGHCEFVILE 74 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcccc------CCCCCcCHHHH-HHHHHHHHhCCCEEEEc
Confidence 5789999999999999999999998 567789888876554311 00111111111 11222333345555554
Q ss_pred cCCc-cccchhhHHhh--c---ccEEEEecCCcceecc-cCCC----CChhHHHHHHHHHhhcccccceeeeHHHHHhHh
Q 023776 171 GNGA-VQSSANLALLR--H---GISLWIDVPPGMVARM-DHSG----FPESELFALYKEMRDGYATADVTVSLQKVASQL 239 (277)
Q Consensus 171 g~g~-v~~~~~~~~L~--~---~~vV~L~~~~e~l~~R-~~R~----l~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~ 239 (277)
+... ......+..+. . ..+|||++|++++.+| ..|+ ++++.++..++.+.+.+ .++.+|++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~------- 146 (166)
T PRK06762 75 GILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLG-VIGETIFT------- 146 (166)
T ss_pred hhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcC-CCCeEEec-------
Confidence 3210 00111122222 2 3789999999999999 5553 46788999998887765 36777766
Q ss_pred CCCcccccccchhhHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~ 261 (277)
++.++++++++|+..+.
T Consensus 147 -----~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 147 -----DNLSLKDIFDAILTDIG 163 (166)
T ss_pred -----CCCCHHHHHHHHHHHhc
Confidence 47899999999998764
No 26
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.55 E-value=5.1e-15 Score=128.49 Aligned_cols=152 Identities=16% Similarity=0.250 Sum_probs=97.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-----hhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-----g~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..|+|+|++||||||+++.|+..| |..++|.|.+.....+. +. +..+.....++.+. .+...+...+..
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~--~~-~~~~~~~~~~~~l~-~~a~~~~~~G~~ 98 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD--LG-FSDADRKENIRRVG-EVAKLMVDAGLV 98 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc--CC-cCcccHHHHHHHHH-HHHHHHhhCCCE
Confidence 67899999999999999999999977 35778998876544321 10 11112222333321 123334444556
Q ss_pred EEEecCCccccch----hhHHhh-ccc-EEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc--c-cceeeeHH
Q 023776 167 VVCAGNGAVQSSA----NLALLR-HGI-SLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA--T-ADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~----~~~~L~-~~~-vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~--~-Ad~vId~~ 233 (277)
||++..+ .... .+++++ .++ +|||++|.+++.+|..||+- .+++..++..+.+ |+ . ||++||+
T Consensus 99 VI~~~~~--~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~-Y~~p~~ad~~Idt- 174 (198)
T PRK03846 99 VLTAFIS--PHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSV-YEAPESPEIHLDT- 174 (198)
T ss_pred EEEEeCC--CCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCccccccc-CCCCCCCCEEEEC-
Confidence 6643221 1112 233343 455 79999999999999546541 2344556667677 76 4 8999987
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 175 -----------~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 175 -----------GEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred -----------CCCCHHHHHHHHHHHHHH
Confidence 478999999999998853
No 27
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.54 E-value=1.6e-14 Score=120.72 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=97.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhhhh---HHHHHHHHHhhhcCcEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---QAETEVLKQLSSMGRLVV 168 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~fr---~~e~~vl~~l~~~~~~VI 168 (277)
+.|.|.|+|||||||||+.||+.||+++++++.+++++.. |+++.++ .+..+..+. .+... ...++..+++|+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef-~~~AE~~p~iD~~iD~r-q~e~a~~~nvVl 78 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEF-SRYAEEDPEIDKEIDRR-QKELAKEGNVVL 78 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHH-HHHHhcCchhhHHHHHH-HHHHHHcCCeEE
Confidence 3689999999999999999999999999999999877643 2666553 333333321 12222 234444455555
Q ss_pred Eec-CCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHH--------HHHhhccc-------ccceee
Q 023776 169 CAG-NGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALY--------KEMRDGYA-------TADVTV 230 (277)
Q Consensus 169 a~g-~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~--------~~r~~~y~-------~Ad~vI 230 (277)
... .|++.. -..++.|||.+|++++++| ..| +.+-....... ......|. -.|+||
T Consensus 79 egrLA~Wi~k------~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDlSiyDLVi 152 (179)
T COG1102 79 EGRLAGWIVR------EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDLSIYDLVI 152 (179)
T ss_pred hhhhHHHHhc------cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccceeeEEEE
Confidence 311 122211 0167899999999999999 666 44322111111 11123343 267888
Q ss_pred eHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 231 SLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 231 d~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
|+ +..+|++++..|...+..+..
T Consensus 153 nT------------s~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 153 NT------------SKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred ec------------ccCCHHHHHHHHHHHHHhhcc
Confidence 87 589999999999988876643
No 28
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.54 E-value=7.3e-15 Score=124.68 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=98.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++.+|+|+|+|||||||+|+.|+..+. +.++|.|.+......+.. +..+.....++... .+...+...+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~---~~~~~r~~~~~~~~-~~a~~~~~~g~~ 78 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLG---FSKEDRDTNIRRIG-FVANLLTRHGVI 78 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCC---CChhhHHHHHHHHH-HHHHHHHhCCCE
Confidence 468999999999999999999999884 567899987654432111 11112223333321 122222233444
Q ss_pred EEEecCCccccchhhHHhh----cccEEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc--ccceeeeHHHHH
Q 023776 167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA--TADVTVSLQKVA 236 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~--~Ad~vId~~~~a 236 (277)
|+..+ ..+ ....+..++ ...+|||++|++++.+|..||+. .+++..++.++.+.|. .||++|++
T Consensus 79 vi~~~-~~~-~~~~~~~l~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~---- 152 (175)
T PRK00889 79 VLVSA-ISP-YRETREEVRANIGNFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRT---- 152 (175)
T ss_pred EEEec-CCC-CHHHHHHHHhhcCCeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEEC----
Confidence 44432 222 234444443 34689999999999999655532 2345556677888885 38999987
Q ss_pred hHhCCCcccccccchhhHHHHHHHHH
Q 023776 237 SQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 237 ~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++++..
T Consensus 153 --------~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 153 --------DLESLEESVDKVLQKLEE 170 (175)
T ss_pred --------CCCCHHHHHHHHHHHHHH
Confidence 368999999999999864
No 29
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=1.8e-14 Score=126.14 Aligned_cols=158 Identities=11% Similarity=0.080 Sum_probs=104.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCCh-hHHHHhhhhhhhhh---------------hHHH-H
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE-SAAKAFRESDEKGY---------------QQAE-T 154 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~-~i~~i~~~~g~~~f---------------r~~e-~ 154 (277)
.+..|+|||++||||||+++.|++.+|+.++|+|.+.++.+... ...++...+|+..+ .+.+ .
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 45789999999999999999999989999999999998887521 23455556665443 1111 1
Q ss_pred HHHHHhh-------------hc-CcEEEEecCCccccchhhHHh-hcccEEEEecCCcceecc-cC-CCCChhHHHHHHH
Q 023776 155 EVLKQLS-------------SM-GRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVARM-DH-SGFPESELFALYK 217 (277)
Q Consensus 155 ~vl~~l~-------------~~-~~~VIa~g~g~v~~~~~~~~L-~~~~vV~L~~~~e~l~~R-~~-R~l~~~~l~~~~~ 217 (277)
+.|.++. .. ...++... ..+.+..+..- ..+.+|++.||.+++.+| .. +++++++...++.
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ri~ 162 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDI--PLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVAFIN 162 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEe--chhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1122211 11 12222211 11122222111 257899999999999999 44 4789888888877
Q ss_pred HHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 218 EMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 218 ~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.+.+.-+ .||++|+|+ +.+.+++-.++.+.+++.
T Consensus 163 ~Q~~~eek~~~aD~VI~N~------------g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 163 LQISDKEREKIADFVIDNT------------ELTDQELESKLITTINEI 199 (204)
T ss_pred hCCCHHHHHHhCCEEEECc------------CCCHHHHHHHHHHHHHHH
Confidence 6655433 499999983 228888888888777765
No 30
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.53 E-value=2.1e-14 Score=124.58 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=97.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhhhh----------------HHH-H
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ----------------QAE-T 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~fr----------------~~e-~ 154 (277)
..|+|+|++||||||+++.|++ +|+.++|+|.+.++.+. +....+++..+|+..+. +.+ .
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 99999999999988763 22233444444443321 111 0
Q ss_pred HHHHHhh-------------hc--CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHHH
Q 023776 155 EVLKQLS-------------SM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALYK 217 (277)
Q Consensus 155 ~vl~~l~-------------~~--~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~ 217 (277)
..|.++. .. ...||... ..+....+.. .++.+|++++|.+++.+| ..| +++.+.+..++.
T Consensus 82 ~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~--pll~e~~~~~-~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~ri~ 158 (194)
T PRK00081 82 KKLEAILHPLIREEILEQLQEAESSPYVVLDI--PLLFENGLEK-LVDRVLVVDAPPETQLERLMARDGLSEEEAEAIIA 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCEEEEEe--hHhhcCCchh-hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 1111111 11 12333321 1121222211 157999999999999999 544 678777777665
Q ss_pred HHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 218 EMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 218 ~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
.+.+..+ .+|++|+| +.+++++..++...++.
T Consensus 159 ~Q~~~~~~~~~ad~vI~N-------------~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 159 SQMPREEKLARADDVIDN-------------NGDLEELRKQVERLLQE 193 (194)
T ss_pred HhCCHHHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence 5444332 48999997 46888888888777654
No 31
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.1e-14 Score=123.35 Aligned_cols=153 Identities=20% Similarity=0.314 Sum_probs=98.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..||+||++||||||+|.+|+++|- ..++|.|.+...+..+.. +-.+++.+..+.+ .++.+-++..+-.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLg---Fs~edR~eniRRv-aevAkll~daG~i 97 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLG---FSREDRIENIRRV-AEVAKLLADAGLI 97 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCC---CChHHHHHHHHHH-HHHHHHHHHCCeE
Confidence 568999999999999999999999884 346899998876543211 2233344455443 3344444444444
Q ss_pred EEEecCCccccchhhH----Hhhc--ccEEEEecCCcceecccCCCCCh----hHHHHHHHHHhhccc---ccceeeeHH
Q 023776 167 VVCAGNGAVQSSANLA----LLRH--GISLWIDVPPGMVARMDHSGFPE----SELFALYKEMRDGYA---TADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~----~L~~--~~vV~L~~~~e~l~~R~~R~l~~----~~l~~~~~~r~~~y~---~Ad~vId~~ 233 (277)
||++- +-.+.+.++ .+.. .+.||++||++++.+|+..|+.. .++..+-.. ...|+ ++|+++|+
T Consensus 98 viva~--ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGi-d~pYE~P~~Pel~l~t- 173 (197)
T COG0529 98 VIVAF--ISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGI-DSPYEAPENPELHLDT- 173 (197)
T ss_pred EEEEe--eCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCC-CCCCCCCCCCeeEecc-
Confidence 55431 111223333 3332 36799999999999998776532 233443333 23454 47899987
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
+..++++.+..|++++...
T Consensus 174 -----------~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 174 -----------DRNSVEECVEQILDLLKER 192 (197)
T ss_pred -----------ccCCHHHHHHHHHHHHHhc
Confidence 4789999999999988653
No 32
>PRK14530 adenylate kinase; Provisional
Probab=99.51 E-value=5.4e-14 Score=123.51 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=72.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhh---------hhhhhhHHHHHHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES---------DEKGYQQAETEVLKQLSS 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~---------g~~~fr~~e~~vl~~l~~ 162 (277)
.++.|+|+|+|||||||+|+.||+.+|+.++++|+++++..+ .++.++.... |.....+....++.....
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~-~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQ-MDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhcc-CCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999987663 2222222211 221222233444444432
Q ss_pred -cCcEEEEecCCccccchhhHHhh----cccEEEEecCCcceecc-cCC
Q 023776 163 -MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 163 -~~~~VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R 205 (277)
....|++ |++......+.|. .+.+|||++|.+++.+| .+|
T Consensus 81 ~~~~~Ild---G~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R 126 (215)
T PRK14530 81 DADGFVLD---GYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGR 126 (215)
T ss_pred cCCCEEEc---CCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCC
Confidence 3345554 4555444444442 67899999999999998 443
No 33
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.51 E-value=5.4e-14 Score=117.77 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=94.0
Q ss_pred EEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 96 VFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
|+|+|++||||||+|+.|++.+|+.++|.|.+.... .| .. .....++..+..........+......||+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~ 76 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAG-IP---LNDDDRWPWLQNLNDASTAAAAKNKVGIIT 76 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcC-CC---CChhhHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 579999999999999999999999999999975321 11 11 112223344555444444344333445776
Q ss_pred ecCCccccchhhHHhh-c---ccEEEEecCCcceecc-cCCCC---ChhHHHHHHHHHhh-cccccc-eeeeHHHHHhHh
Q 023776 170 AGNGAVQSSANLALLR-H---GISLWIDVPPGMVARM-DHSGF---PESELFALYKEMRD-GYATAD-VTVSLQKVASQL 239 (277)
Q Consensus 170 ~g~g~v~~~~~~~~L~-~---~~vV~L~~~~e~l~~R-~~R~l---~~~~l~~~~~~r~~-~y~~Ad-~vId~~~~a~~~ 239 (277)
++. .....++.++ . ..+|||++|.+++.+| ..|+- +.+.+...+..... .+..++ .+||+
T Consensus 77 ~t~---~~~~~r~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id~------- 146 (163)
T TIGR01313 77 CSA---LKRHYRDILREAEPNLHFIYLSGDKDVILERMKARKGHFMKADMLESQFAALEEPLADETDVLRVDI------- 146 (163)
T ss_pred ecc---cHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCCCCCCCceEEEEC-------
Confidence 642 3445555554 2 2579999999999999 56642 44556666544332 233334 67786
Q ss_pred CCCcccccccchhhHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~ 261 (277)
..+++++.++|.+.+-
T Consensus 147 ------~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 147 ------DQPLEGVEEDCIAVVL 162 (163)
T ss_pred ------CCCHHHHHHHHHHHHh
Confidence 4788999999887763
No 34
>PRK01184 hypothetical protein; Provisional
Probab=99.50 E-value=4.4e-14 Score=120.70 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=90.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHH---HH-----HHHhhh-cC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET---EV-----LKQLSS-MG 164 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~---~v-----l~~l~~-~~ 164 (277)
+.|+|+|+|||||||+++ +++.+|+.++++|+++++......++.+....|+..+...+. .+ ...+.. .+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 579999999999999998 678899999998777766531011111222223322211111 11 112222 12
Q ss_pred cEEEEecCCccccchhhHHh----h-cccEEEEecCCcceecc-cCCCC-----ChhHHHHHHHHHhh-----cccccce
Q 023776 165 RLVVCAGNGAVQSSANLALL----R-HGISLWIDVPPGMVARM-DHSGF-----PESELFALYKEMRD-----GYATADV 228 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L----~-~~~vV~L~~~~e~l~~R-~~R~l-----~~~~l~~~~~~r~~-----~y~~Ad~ 228 (277)
..||..|. ......+.+ . ...+|||+||.+++.+| ..|+. +.+.+..+.+.+.+ .+..||+
T Consensus 81 ~~vvidg~---r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~ 157 (184)
T PRK01184 81 EVVVIDGV---RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADY 157 (184)
T ss_pred CcEEEeCC---CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCE
Confidence 33443331 111112222 2 34799999999999999 44532 33445544433322 2345999
Q ss_pred eeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 229 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 229 vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+|++ +.+++++..+|.+.+..+..
T Consensus 158 vI~N-------------~~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 158 MIVN-------------DSTLEEFRARVRKLLERILR 181 (184)
T ss_pred EEeC-------------CCCHHHHHHHHHHHHHHHhc
Confidence 9997 46899999988888776543
No 35
>PRK13975 thymidylate kinase; Provisional
Probab=99.48 E-value=6.5e-14 Score=120.48 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=90.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchhhhh----cC-----ChhHHHHhhhhhhhhhhHHHHHHHHHhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVFEA----AG-----GESAAKAFRESDEKGYQQAETEVLKQLS 161 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li~~~----~g-----~~~i~~i~~~~g~~~fr~~e~~vl~~l~ 161 (277)
++.|+|.|++||||||+++.|++.|+ +.+.+.|..+.+. +. ...+..+|...+.+.|+.++.. +.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~----~~ 77 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEED----LK 77 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH----Hc
Confidence 57899999999999999999999998 4445555443221 11 1223345555555555544322 11
Q ss_pred hcCcEEEEec-----------CCcccc---chhhHHhhcccEEEEecCCcceecc-cCCC--C-Ch----hHHHHHHHHH
Q 023776 162 SMGRLVVCAG-----------NGAVQS---SANLALLRHGISLWIDVPPGMVARM-DHSG--F-PE----SELFALYKEM 219 (277)
Q Consensus 162 ~~~~~VIa~g-----------~g~v~~---~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~--l-~~----~~l~~~~~~r 219 (277)
. ..||+.+ +|.... ..+...++++++|||++|++++.+| ..|+ . .. +.+.+.|.++
T Consensus 78 -~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~~~y~~~ 155 (196)
T PRK13975 78 -K-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEALKRMETRDKEIFEKKEFLKKVQEKYLEL 155 (196)
T ss_pred -C-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 1 3445432 222110 0111112478999999999999999 5453 2 11 1233344443
Q ss_pred hh---ccc-ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 220 RD---GYA-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 220 ~~---~y~-~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.. .+. .+.++||+ ++.++++++++|.+.|...
T Consensus 156 ~~~~~~~~~~~~~~Id~------------~~~~~eev~~~I~~~i~~~ 191 (196)
T PRK13975 156 ANNEKFMPKYGFIVIDT------------TNKSIEEVFNEILNKIKDK 191 (196)
T ss_pred HhhcccCCcCCEEEEEC------------CCCCHHHHHHHHHHHHHHh
Confidence 32 111 24678876 4689999999999988654
No 36
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.48 E-value=4.2e-14 Score=135.27 Aligned_cols=156 Identities=19% Similarity=0.145 Sum_probs=102.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC--hhHHHHhhhhhhh----------------hhhHHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG--ESAAKAFRESDEK----------------GYQQAETE 155 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~--~~i~~i~~~~g~~----------------~fr~~e~~ 155 (277)
..|+|||++||||||+++.|++ +|++++|+|.+.++.+.. ..+.++++.+|+. .|.+.+..
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999988 899999999999887641 2334566666654 44433221
Q ss_pred -HHHHhhh--------------cCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc--cCCCCChhHHHHHHHH
Q 023776 156 -VLKQLSS--------------MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM--DHSGFPESELFALYKE 218 (277)
Q Consensus 156 -vl~~l~~--------------~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R--~~R~l~~~~l~~~~~~ 218 (277)
.+..+.+ .+..|+..+.. .+....+.. ..+.+|||++|.+++.+| ..|+++.+.....+..
T Consensus 81 ~~le~i~hP~I~~~i~~~i~~~~~~~vvv~eip-LL~E~~~~~-~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~ri~~ 158 (395)
T PRK03333 81 AVLNGIVHPLVGARRAELIAAAPEDAVVVEDIP-LLVESGMAP-LFHLVVVVDADVEVRVRRLVEQRGMAEADARARIAA 158 (395)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCCEEEEEee-eeecCCchh-hCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 2222211 11112221111 111111111 157899999999999999 4578877666655544
Q ss_pred Hhhcc---cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 219 MRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 219 r~~~y---~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+.+.- +.||++|++ +.+++++..+|.+.++.++.
T Consensus 159 Q~~~e~k~~~AD~vIdN-------------~~s~e~l~~~v~~~l~~~~~ 195 (395)
T PRK03333 159 QASDEQRRAVADVWLDN-------------SGTPDELVEAVRALWADRLL 195 (395)
T ss_pred cCChHHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 33321 248999997 57899999999988887766
No 37
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.47 E-value=1.7e-13 Score=119.50 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=98.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhh----------------hhhHHHH-
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEK----------------GYQQAET- 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~----------------~fr~~e~- 154 (277)
..|+|+|.+||||||+++.|++ +|++++|+|.+.++.+. +....++...+|.. .|.+.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 89999999998776653 11233444444432 2322111
Q ss_pred HHHHHhhh----------------cC-cEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-c-CCCCChhHHHHH
Q 023776 155 EVLKQLSS----------------MG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-HSGFPESELFAL 215 (277)
Q Consensus 155 ~vl~~l~~----------------~~-~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~-~R~l~~~~l~~~ 215 (277)
+.+.++.+ .+ ..++... ..+....+.. ..+.+||++||.+++.+| . .|+++.+++..+
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~--plL~e~g~~~-~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDM--PLLVEKGLDR-KMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEe--eceeEcCccc-cCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 11121110 11 1222111 0111111110 157899999999999999 4 458888888887
Q ss_pred HHHHhhcc---cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 216 YKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 216 ~~~r~~~y---~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.+.+.+ ..||++|++ +.+++++..++...++.+.+
T Consensus 158 i~~Q~~~~~k~~~ad~vI~N-------------~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 158 IAAQIPDDVRLKAADIVVDN-------------NGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHhcCCHHHHHHhCCEEEEC-------------cCCHHHHHHHHHHHHHHHHh
Confidence 77665543 249999998 47889988888887766543
No 38
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.47 E-value=1.5e-13 Score=119.52 Aligned_cols=151 Identities=20% Similarity=0.153 Sum_probs=93.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Chh-HHHHhhhhhhhh-----------------hhHHH-
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES-AAKAFRESDEKG-----------------YQQAE- 153 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~~-i~~i~~~~g~~~-----------------fr~~e- 153 (277)
+.|+|+|++||||||+++.|++.+|++++|+|.+.++.+. +.. ...+...+|... |.+.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 4799999999999999999999889999999999888753 111 122222222211 21111
Q ss_pred HHHHHHhh-------------hc--CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHH
Q 023776 154 TEVLKQLS-------------SM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALY 216 (277)
Q Consensus 154 ~~vl~~l~-------------~~--~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~ 216 (277)
...|.++. .. ...|+... ..+....+.. .++.+||++||.+++.+| ..| +++++++..+.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~--pll~E~~~~~-~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~ri 158 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVI--PLLFEAKLTD-LCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEARI 158 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe--HHhcCcchHh-CCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11121111 11 12232211 0111222211 157899999999999999 555 78888877777
Q ss_pred HHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 217 KEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 217 ~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
..+.+..+ .||++|+| +.+.+++..++.+.+
T Consensus 159 ~~Q~~~~~k~~~aD~vI~N-------------~g~~e~l~~qv~~~l 192 (195)
T PRK14730 159 NAQWPLEEKVKLADVVLDN-------------SGDLEKLYQQVDQLL 192 (195)
T ss_pred HhCCCHHHHHhhCCEEEEC-------------CCCHHHHHHHHHHHH
Confidence 66544332 49999998 468888877776554
No 39
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.46 E-value=2.8e-13 Score=132.92 Aligned_cols=152 Identities=16% Similarity=0.222 Sum_probs=99.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-----Chh------HHHHhhh----------hhhhh--
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GES------AAKAFRE----------SDEKG-- 148 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-----~~~------i~~i~~~----------~g~~~-- 148 (277)
++..|+|.|++||||||+++.|++.||+.++|+|.+.+...- +.+ +...... .+...
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 568999999999999999999999999999999998876411 010 1111100 00000
Q ss_pred --------------------------hhHHHHHHHHHhhhcCcEEEEecC--CccccchhhHHhhcccEEEEecCCccee
Q 023776 149 --------------------------YQQAETEVLKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVA 200 (277)
Q Consensus 149 --------------------------fr~~e~~vl~~l~~~~~~VIa~g~--g~v~~~~~~~~L~~~~vV~L~~~~e~l~ 200 (277)
.|+.-....+++...++ +|..|. |+++.|+ .++.|||++|+++++
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~-iV~eGRDigtvV~P~------AdlKIfL~As~evRa 435 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGG-LVAEGRDIGTHVFPD------AELKIFLTASVEERA 435 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCC-EEEEcccceeEEcCC------CCEEEEEECCHHHHH
Confidence 00000001111222222 444442 3333332 468999999999999
Q ss_pred cc-----cCCCC---ChhHHHHHHHHHh---------hcccc-cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 201 RM-----DHSGF---PESELFALYKEMR---------DGYAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 201 ~R-----~~R~l---~~~~l~~~~~~r~---------~~y~~-Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+| ..||+ +.+.+.+.+.+|. |+|.. ++++||+ +++++++++++|++.+++
T Consensus 436 ~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDT------------s~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 436 RRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELIT------------DGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred HHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 98 24675 3467777788888 88875 5688987 689999999999999864
No 40
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.44 E-value=4.8e-13 Score=112.11 Aligned_cols=146 Identities=14% Similarity=0.193 Sum_probs=86.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhh--hhhhhhhHHHHHHHHHhh-hcCcEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRE--SDEKGYQQAETEVLKQLS-SMGRLVV 168 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~--~g~~~fr~~e~~vl~~l~-~~~~~VI 168 (277)
+.|+|+|++||||||+|+.|++.+|++++|.|.++++..+ +.+...+... ........+. ..+..+. ....+||
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKID-RRIHEIALKEKNVVL 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHH-HHHHHHHhcCCCEEE
Confidence 3699999999999999999999999999999887766432 1222221111 0111111111 1223333 3334555
Q ss_pred EecC--CccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHHH----HHhhc----cc-------cccee
Q 023776 169 CAGN--GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALYK----EMRDG----YA-------TADVT 229 (277)
Q Consensus 169 a~g~--g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~----~r~~~----y~-------~Ad~v 229 (277)
. |. ++... -..+++|||++|.+++.+| ..| +.+.+.....+. .+... |. ..|++
T Consensus 80 ~-g~~~~~~~~------~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~ydl~ 152 (171)
T TIGR02173 80 E-SRLAGWIVR------EYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLV 152 (171)
T ss_pred E-ecccceeec------CCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccEE
Confidence 3 32 11110 0146899999999999999 444 455443333221 11111 11 25788
Q ss_pred eeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 230 VSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 230 Id~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
||+ +..++++ ++.|...+
T Consensus 153 i~t------------~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 153 INT------------SNWDPNN-VDIILDAL 170 (171)
T ss_pred EEC------------CCCCHHH-HHHHHHHh
Confidence 887 6899999 99888765
No 41
>PLN02422 dephospho-CoA kinase
Probab=99.43 E-value=4.4e-13 Score=119.52 Aligned_cols=154 Identities=14% Similarity=0.086 Sum_probs=98.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-h-hHHHHhhhhhhhhh----------------hHHH-H
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E-SAAKAFRESDEKGY----------------QQAE-T 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-~-~i~~i~~~~g~~~f----------------r~~e-~ 154 (277)
..|+|||.+||||||+++.|+ .+|++++|+|.+.++.+.. . ....+.+.+|+..+ .+.+ .
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 369999999999999999998 4899999999998887641 1 12344444544332 1111 1
Q ss_pred HHHHHhhh----------------c-CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHH
Q 023776 155 EVLKQLSS----------------M-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFAL 215 (277)
Q Consensus 155 ~vl~~l~~----------------~-~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~ 215 (277)
+.|.++.+ . ...|+... ..+.+.++.. .++.+|+++||.+++.+| ..| +++.+++..+
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~ei--pLL~E~~~~~-~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDI--PLLFETKMDK-WTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEe--hhhhhcchhh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 11111110 1 12222211 1111222211 157899999999999999 555 7888888877
Q ss_pred HHHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 216 YKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 216 ~~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
...+.+..+ .||++|+| +.+.+++..++.+.++.+.
T Consensus 158 i~~Q~~~eek~~~AD~VI~N-------------~gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 158 INAQMPLDWKRSKADIVIDN-------------SGSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHcCChhHHHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 766555422 49999998 4788988888887776653
No 42
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.43 E-value=1.1e-13 Score=117.06 Aligned_cols=141 Identities=21% Similarity=0.273 Sum_probs=89.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhh---hhhhHHH--HHHHHHhhhcCcEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDE---KGYQQAE--TEVLKQLSSMGRLVV 168 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~---~~fr~~e--~~vl~~l~~~~~~VI 168 (277)
++|+|||.||+||||+|+.|+ .+|+.+++..+++++. | .+...++ ..-.+.+ ...+..+......||
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~-~------~~~~~de~r~s~~vD~d~~~~~le~~~~~~~~Iv 72 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN-G------LYTEYDELRKSVIVDVDKLRKRLEELLREGSGIV 72 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc-C------CeeccCCccceEEeeHHHHHHHHHHHhccCCeEe
Confidence 579999999999999999999 8999999988777652 2 1111111 1111111 111222222233333
Q ss_pred EecCCccccchhhHHhh-cccEEEEecCCcceecc-cCCCCChhHHHH-HHHHHhh-cc----cc--cceeeeHHHHHhH
Q 023776 169 CAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPESELFA-LYKEMRD-GY----AT--ADVTVSLQKVASQ 238 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R~l~~~~l~~-~~~~r~~-~y----~~--Ad~vId~~~~a~~ 238 (277)
. .+...++. .++||.|.|+++++.+| ..||++++.+.+ +..+... .+ +. +-+.||+
T Consensus 73 d--------~H~~hl~~~~dlVvVLR~~p~~L~~RLk~RGy~~eKI~ENveAEi~~vi~~EA~E~~~~v~evdt------ 138 (180)
T COG1936 73 D--------SHLSHLLPDCDLVVVLRADPEVLYERLKGRGYSEEKILENVEAEILDVILIEAVERFEAVIEVDT------ 138 (180)
T ss_pred e--------chhhhcCCCCCEEEEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCceEEEEC------
Confidence 2 23334455 78999999999999999 899998765443 2222211 11 11 3355554
Q ss_pred hCCCcccccccchhhHHHHHHHHH
Q 023776 239 LGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 239 ~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.+|++++++|.+.|..
T Consensus 139 ------t~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 139 ------TNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred ------CCCCHHHHHHHHHHHHcc
Confidence 799999999999999984
No 43
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.43 E-value=3.6e-13 Score=117.58 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=35.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~ 131 (277)
..|.|-||+||||||||+.||++|||.|+|++.+.+..
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 78999999999999999999999999999999887653
No 44
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.42 E-value=5.5e-13 Score=119.76 Aligned_cols=158 Identities=13% Similarity=0.061 Sum_probs=99.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Chh-HHHHhhhhhhh----------------hhhHHH-H
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES-AAKAFRESDEK----------------GYQQAE-T 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~~-i~~i~~~~g~~----------------~fr~~e-~ 154 (277)
..|+|||.+|||||||++.|.+.+|++++|+|.+.++.+. +.. ...+.+.+|.. .|.+.+ .
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999998889999999999888764 111 12222222221 122211 1
Q ss_pred HHHHHhhh-------------------------c-CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-C
Q 023776 155 EVLKQLSS-------------------------M-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-G 206 (277)
Q Consensus 155 ~vl~~l~~-------------------------~-~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~ 206 (277)
+.|.++.+ . ...||... ..+.+.++....++.+|+++||.+++.+| ..| +
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~ev--PLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g 159 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDA--PTLFETKTFTYFVSASVVVSCSEERQIERLRKRNG 159 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEe--chhhccCchhhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 11111110 0 11233211 11222222111258999999999999999 544 7
Q ss_pred CChhHHHHHHHHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 207 FPESELFALYKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 207 l~~~~l~~~~~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
++.+++.+++..+.+..+ .||++|+|+ |..+++++..+|.+.++.+.
T Consensus 160 ~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~-----------~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 160 FSKEEALQRIGSQMPLEEKRRLADYIIEND-----------SADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred CCHHHHHHHHHhCCCHHHHHHhCCEEEECC-----------CCCCHHHHHHHHHHHHHHHH
Confidence 888888887766544322 499999972 11799999999988876544
No 45
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.42 E-value=3.9e-13 Score=115.64 Aligned_cols=146 Identities=17% Similarity=0.140 Sum_probs=92.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-h-hHHHHhhhhhhhh----------------hhHHH---
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E-SAAKAFRESDEKG----------------YQQAE--- 153 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-~-~i~~i~~~~g~~~----------------fr~~e--- 153 (277)
.|+|+|.+||||||+++.|++..|++++|+|.+.++.+.. . ....+.+.+|... |.+.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999997679999999998887641 1 1122333333222 22211
Q ss_pred -----------HHHHHHhhh---cCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-cCC-CCChhHHHHHH
Q 023776 154 -----------TEVLKQLSS---MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESELFALY 216 (277)
Q Consensus 154 -----------~~vl~~l~~---~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~ 216 (277)
.++.+.+.. .+..|+... ++..+. .... ++.+||+++|.+++.+| ..| +++.+.+..++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~---pll~e~-~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~ 156 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDV---PLLFEN-KLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRL 156 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEc---hHhhhC-CcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 011111111 112333221 111111 1112 67899999999999999 555 67888888887
Q ss_pred HHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHH
Q 023776 217 KEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVL 257 (277)
Q Consensus 217 ~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il 257 (277)
..+.+.++ .||++|++ +.++++...++.
T Consensus 157 ~~q~~~~~~~~~ad~vI~N-------------~~~~e~l~~~~~ 187 (188)
T TIGR00152 157 ASQMDIEERLARADDVIDN-------------SATLADLVKQLE 187 (188)
T ss_pred HhcCCHHHHHHhCCEEEEC-------------CCCHHHHHHHHh
Confidence 77665554 39999997 478888777664
No 46
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.40 E-value=1.9e-13 Score=119.41 Aligned_cols=158 Identities=23% Similarity=0.242 Sum_probs=98.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhh----------------hhhhhHHH-
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESD----------------EKGYQQAE- 153 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g----------------~~~fr~~e- 153 (277)
...|.|||++||||||+++.+++ +|++++|+|.++++.+. +.....+...+| +..|.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 47899999999999999999999 99999999999986543 111122222222 22333322
Q ss_pred HHHHHHhhhc---CcE-EEEec--CCccccchhhHHh-h------cccEEEEecCCcceecc-cCC-CCChhHHHHHHHH
Q 023776 154 TEVLKQLSSM---GRL-VVCAG--NGAVQSSANLALL-R------HGISLWIDVPPGMVARM-DHS-GFPESELFALYKE 218 (277)
Q Consensus 154 ~~vl~~l~~~---~~~-VIa~g--~g~v~~~~~~~~L-~------~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~~ 218 (277)
...|+++.+- ... .+..+ .++++. + ..+| + .+.+|+++||++++.+| .+| +++++....+...
T Consensus 81 ~~~Le~i~hPli~~~~~~~~~~~~~~~~~~-e-iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~~~~ 158 (201)
T COG0237 81 RLKLEKILHPLIRAEIKVVIDGARSPYVVL-E-IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEARLAS 158 (201)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCceEE-E-chHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHHHHh
Confidence 2233333210 000 00000 111110 0 1111 1 35899999999999999 666 4777777766655
Q ss_pred Hhhcc---cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHH
Q 023776 219 MRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 266 (277)
Q Consensus 219 r~~~y---~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~ 266 (277)
+.+.. ..||+++++ +.++++...++.+.++.+...
T Consensus 159 Q~~~~ek~~~ad~vi~n-------------~~~i~~l~~~i~~~~~~~~~~ 196 (201)
T COG0237 159 QRDLEEKLALADVVIDN-------------DGSIENLLEQIEKLLKELLGL 196 (201)
T ss_pred cCCHHHHHhhcCChhhc-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 54443 359999998 578888888888888877654
No 47
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.40 E-value=2.3e-13 Score=116.99 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=82.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Ch-hHHHHhhhhhhhh----------------hhHHH-H
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE-SAAKAFRESDEKG----------------YQQAE-T 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~-~i~~i~~~~g~~~----------------fr~~e-~ 154 (277)
+.|+|||.+||||||+++.|++ +|++++|+|.+.++.+. +. ....+...+|... |.+.+ .
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999988 99999999999988875 22 1223333344332 22111 1
Q ss_pred HHHHHhh-------------h--cCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-c-CCCCChhHHHHHHH
Q 023776 155 EVLKQLS-------------S--MGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-HSGFPESELFALYK 217 (277)
Q Consensus 155 ~vl~~l~-------------~--~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~-~R~l~~~~l~~~~~ 217 (277)
+.|.++. . ....++... ..+.+..+.. .++.+|++.||.++..+| . +++++.+.+..++.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~--pLL~E~~~~~-~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri~ 156 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKRNKSEKVVVVEI--PLLFESGLEK-LCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARIA 156 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE---TTTTTTTGGG-GSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCEEEEEc--chhhhhhHhh-hhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 1222221 1 113344321 1222232221 168999999999999999 4 45899999888887
Q ss_pred HHhhccc---ccceeeeHH
Q 023776 218 EMRDGYA---TADVTVSLQ 233 (277)
Q Consensus 218 ~r~~~y~---~Ad~vId~~ 233 (277)
.+.+..+ .||++|+|+
T Consensus 157 ~Q~~~~~k~~~ad~vI~N~ 175 (180)
T PF01121_consen 157 SQMPDEEKRKRADFVIDNN 175 (180)
T ss_dssp TS--HHHHHHH-SEEEE-S
T ss_pred hCCCHHHHHHhCCEEEECC
Confidence 7666543 499999984
No 48
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.40 E-value=8.1e-13 Score=112.42 Aligned_cols=154 Identities=14% Similarity=0.194 Sum_probs=87.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CC----hhHHHHhhhhhhhh-----hhHHHHHHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKG-----YQQAETEVLKQLS 161 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~----~~i~~i~~~~g~~~-----fr~~e~~vl~~l~ 161 (277)
+.+.|+|+|+|||||||+++.|++.+|+.++++|++++... ++ ..+..++.. |... +..+...+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~- 79 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAAL- 79 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHccc-
Confidence 35789999999999999999999999999999988776542 21 122222221 2111 111111111111
Q ss_pred hcCcEEEEecCCccccchhhHHh-----hcccEEEEecCCcceecc-cCCCC-------ChhHH----HHHHHHHhhc--
Q 023776 162 SMGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGF-------PESEL----FALYKEMRDG-- 222 (277)
Q Consensus 162 ~~~~~VIa~g~g~v~~~~~~~~L-----~~~~vV~L~~~~e~l~~R-~~R~l-------~~~~l----~~~~~~r~~~-- 222 (277)
..+..+|..| .+........+ ..+.+|||++|.+++.+| .+|+. ..+.+ ...+++..|.
T Consensus 80 ~~~~~~i~dg--~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~ 157 (188)
T TIGR01360 80 GTSKGFLIDG--YPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIA 157 (188)
T ss_pred CcCCeEEEeC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHH
Confidence 1233344433 22111111222 156899999999999999 44531 22223 3333333332
Q ss_pred -ccc-cce-eeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 223 -YAT-ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 223 -y~~-Ad~-vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
|.. +++ +||. +.+++++..+|...++.
T Consensus 158 ~y~~~~~~~~id~-------------~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 158 YYETKGKLRKINA-------------EGTVDDVFLQVCTAIDK 187 (188)
T ss_pred HHHhCCCEEEEEC-------------CCCHHHHHHHHHHHHhc
Confidence 332 343 5554 58999999999988864
No 49
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.39 E-value=1.3e-12 Score=111.24 Aligned_cols=150 Identities=13% Similarity=0.186 Sum_probs=87.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Ch----hHHHHhhhhhhhhhhHHHHHHHHHhhhc--CcEE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLKQLSSM--GRLV 167 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~----~i~~i~~~~g~~~fr~~e~~vl~~l~~~--~~~V 167 (277)
.|+|+|+|||||||+|+.||+++|+.++++++++++... +. .+.+++ ..|.....+....++.+.... +..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~ 79 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKF 79 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcE
Confidence 489999999999999999999999999999887765432 11 122222 234433333333444443321 2223
Q ss_pred EEecCCccccchhhH----Hh----hcccEEEEecCCcceecc-cCCCC-------ChhHHHHHHHHH----hh---ccc
Q 023776 168 VCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGF-------PESELFALYKEM----RD---GYA 224 (277)
Q Consensus 168 Ia~g~g~v~~~~~~~----~L----~~~~vV~L~~~~e~l~~R-~~R~l-------~~~~l~~~~~~r----~~---~y~ 224 (277)
|-. |++.+..... .+ ..+.+|||++|.+++.+| ..|+. ..+.+...+..+ .| .|.
T Consensus 80 vlD--g~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~ 157 (183)
T TIGR01359 80 LID--GFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYE 157 (183)
T ss_pred EEe--CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 3333222222 12 145799999999999999 55532 123333333221 12 223
Q ss_pred ccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 225 TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 225 ~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
..+ ++||. +.+++++.++|.+.+
T Consensus 158 ~~~~~~~Id~-------------~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 158 NKGKVKEINA-------------EGSVEEVFEDVEKIF 182 (183)
T ss_pred hCCCEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 333 46775 578899888888765
No 50
>PRK13808 adenylate kinase; Provisional
Probab=99.37 E-value=2.4e-12 Score=120.10 Aligned_cols=154 Identities=14% Similarity=0.159 Sum_probs=90.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-----ChhHHHHhhhhhhhhhhHHHHHHHH-Hhhh---cCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GESAAKAFRESDEKGYQQAETEVLK-QLSS---MGR 165 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-----~~~i~~i~~~~g~~~fr~~e~~vl~-~l~~---~~~ 165 (277)
.|+|+|+|||||||+|+.|++.+|+.+++.|+++++... +..+.+++.. |...-.++-..++. .+.. ...
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~-G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMAS-GGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccccCC
Confidence 589999999999999999999999999999999876532 0223333322 22221122122222 2211 122
Q ss_pred EEEEecCCccccchhhH----Hh-----hcccEEEEecCCcceecc-cCC-------C---C---ChhHHHHHHHH---H
Q 023776 166 LVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHS-------G---F---PESELFALYKE---M 219 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~----~L-----~~~~vV~L~~~~e~l~~R-~~R-------~---l---~~~~l~~~~~~---r 219 (277)
.||. |++-..+..+ .+ ..+++|||++|.+++.+| ..| + . ..+.+..++.. .
T Consensus 81 ~ILD---GFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~ 157 (333)
T PRK13808 81 FILD---GFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQ 157 (333)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHH
Confidence 3442 3333222111 12 257899999999999999 443 1 1 12333333222 1
Q ss_pred -h---hcccccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 220 -R---DGYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 220 -~---~~y~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
. ..|...+ ++||. +.++++|.++|...|..+..
T Consensus 158 t~PLl~~Y~e~~~lv~IDa-------------~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 158 TEPLVHYYSEKRKLLTVDG-------------MMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred hHHHHHHhhccCcEEEEEC-------------CCCHHHHHHHHHHHHHHHhC
Confidence 1 2344333 34553 57889999999999987765
No 51
>PLN02674 adenylate kinase
Probab=99.37 E-value=1.5e-12 Score=116.96 Aligned_cols=106 Identities=11% Similarity=0.139 Sum_probs=73.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-----ChhHHHHhhhhhhhhhhHHHHHHHHHhhhcC---
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-----GESAAKAFRESDEKGYQQAETEVLKQLSSMG--- 164 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-----~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~--- 164 (277)
.+.|+|.|+|||||+|+|+.||+.+|+.++++++++++... |..+.+++. .|+....++...++.+.....
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~~ 109 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSCQ 109 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcCcC
Confidence 47899999999999999999999999999999999877631 144555554 577777776666665544321
Q ss_pred -cEEEEecCCccccchhhH----Hhh-----cccEEEEecCCcceecc
Q 023776 165 -RLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 165 -~~VIa~g~g~v~~~~~~~----~L~-----~~~vV~L~~~~e~l~~R 202 (277)
..|+. |++-...... .+. .+.+|+|++|.+++.+|
T Consensus 110 ~g~ilD---GfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R 154 (244)
T PLN02674 110 KGFILD---GFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER 154 (244)
T ss_pred CcEEEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 12221 3333222122 221 45799999999999999
No 52
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.37 E-value=1.8e-12 Score=116.26 Aligned_cols=150 Identities=17% Similarity=0.242 Sum_probs=93.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhh-----hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~-----~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
+|+|+|+|||||||+|+.|++.++. .+++.|.+.+.+ . .+...++..++......++..+..+..||.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~-~------~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~ 73 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESF-P------VWKEKYEEFIRDSTLYLIKTALKNKYSVIV 73 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHh-H------HhhHHhHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 4899999999999999999998853 345666554332 1 012223444555544556665555566776
Q ss_pred ecCCcccc--chhhHHhh-c---ccEEEEecCCcceecc-cCCC--CChhHHHHHHHHHhhc---c--cccceeeeHHHH
Q 023776 170 AGNGAVQS--SANLALLR-H---GISLWIDVPPGMVARM-DHSG--FPESELFALYKEMRDG---Y--ATADVTVSLQKV 235 (277)
Q Consensus 170 ~g~g~v~~--~~~~~~L~-~---~~vV~L~~~~e~l~~R-~~R~--l~~~~l~~~~~~r~~~---y--~~Ad~vId~~~~ 235 (277)
.+.+..-. ...+...+ . ..+|||++|.+.+.+| ..|+ .+.+.+..++....+. | ..++++||++
T Consensus 74 D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~~-- 151 (249)
T TIGR03574 74 DDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDTT-- 151 (249)
T ss_pred eccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEecCC--
Confidence 65432211 11122222 2 3689999999999999 5553 4556666666544322 2 2378999863
Q ss_pred HhHhCCCcccccccchhhHHHHHHHHH
Q 023776 236 ASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 236 a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
...+++++++.|.+.+..
T Consensus 152 ---------~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 152 ---------KKIDYNEILEEILEISEN 169 (249)
T ss_pred ---------CCCCHHHHHHHHHHHhhc
Confidence 234668899998887654
No 53
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.37 E-value=2.5e-12 Score=109.41 Aligned_cols=152 Identities=14% Similarity=0.083 Sum_probs=84.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh--ccCcchhhhhcCChhHH--HH--hhh----hhh----hhhhHHHHHHHH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAGGESAA--KA--FRE----SDE----KGYQQAETEVLK 158 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~--iD~D~li~~~~g~~~i~--~i--~~~----~g~----~~fr~~e~~vl~ 158 (277)
+.+|+|+|+|||||||+|+.|++.++..+ ++.|.++....+ .... +. +.. ..+ ..|... ...+.
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~ 79 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPL-KCQDAEGGIEFDGDGGVSPGPEFRLLEGAW-YEAVA 79 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcCh-hhcccccccccCccCCcccchHHHHHHHHH-HHHHH
Confidence 57899999999999999999999887544 578877654321 0000 00 000 000 122221 22234
Q ss_pred HhhhcCcEEEEecCCccccchhhHH---hh--cccEEEEecCCcceecc-cCCCCChhHH-HHHHHHHhhcccccceeee
Q 023776 159 QLSSMGRLVVCAGNGAVQSSANLAL---LR--HGISLWIDVPPGMVARM-DHSGFPESEL-FALYKEMRDGYATADVTVS 231 (277)
Q Consensus 159 ~l~~~~~~VIa~g~g~v~~~~~~~~---L~--~~~vV~L~~~~e~l~~R-~~R~l~~~~l-~~~~~~r~~~y~~Ad~vId 231 (277)
.++..+..||.... +......++. +. .-+.|||+||.+++.+| ..|+-....+ ....+...+ ....|++||
T Consensus 80 ~~l~~G~~VIvD~~-~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~~~~~~~~~~~~~~~~~-~~~~dl~iD 157 (175)
T cd00227 80 AMARAGANVIADDV-FLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARGDRVPGQARKQARVVHA-GVEYDLEVD 157 (175)
T ss_pred HHHhCCCcEEEeee-ccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcCCccchHHHHHHHHhcC-CCcceEEEE
Confidence 44455554554321 1111222222 22 23689999999999999 5564211112 111221111 123588888
Q ss_pred HHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 232 LQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 232 ~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
+ +..++++++++|++.|
T Consensus 158 t------------s~~s~~e~a~~i~~~l 174 (175)
T cd00227 158 T------------THKTPIECARAIAARV 174 (175)
T ss_pred C------------CCCCHHHHHHHHHHhc
Confidence 7 5789999999998875
No 54
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.36 E-value=1.5e-13 Score=115.45 Aligned_cols=135 Identities=23% Similarity=0.331 Sum_probs=77.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
+|..|||+|.+||||||+|+.|.++|. ..++|.|.+...+.. .+. +-.+++.+..+.+ .++.+.+...+..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~--dl~-fs~~dR~e~~rr~-~~~A~ll~~~G~i 76 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA--DLG-FSKEDREENIRRI-AEVAKLLADQGII 76 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT--T---SSHHHHHHHHHHH-HHHHHHHHHTTSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC--CCC-CCHHHHHHHHHHH-HHHHHHHHhCCCe
Confidence 468999999999999999999999884 457899988765433 111 1122334444433 3334444455666
Q ss_pred EEEecCCccccchhhHHh----hc--ccEEEEecCCcceecccCCCCCh----hHHHHHHHHHhhccc---ccceeeeHH
Q 023776 167 VVCAGNGAVQSSANLALL----RH--GISLWIDVPPGMVARMDHSGFPE----SELFALYKEMRDGYA---TADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L----~~--~~vV~L~~~~e~l~~R~~R~l~~----~~l~~~~~~r~~~y~---~Ad~vId~~ 233 (277)
||++. +....+.++.. .. .+.|||+||.+++.+|+.+++.. .++..+... ...|+ ++|++||++
T Consensus 77 vIva~--isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gv-d~~ye~P~~pdl~idt~ 153 (156)
T PF01583_consen 77 VIVAF--ISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGV-DDPYEEPLNPDLVIDTD 153 (156)
T ss_dssp EEEE------SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTT-SS-----SS-SEEEETT
T ss_pred EEEee--ccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCcccc-ccCCCCCCCCeEEEeCC
Confidence 66542 12223444443 32 47899999999999997666522 112222111 12343 489999984
No 55
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.36 E-value=8.1e-13 Score=109.22 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=83.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhh--hHHHHHHHHHhh---hcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY--QQAETEVLKQLS---SMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~f--r~~e~~vl~~l~---~~~~~ 166 (277)
..++|+|+|.||+||||+|..||+.+|+++|+..+++++- +++..+++++- ---|..++..|- ..+.+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn-------~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKEN-------NLYEGYDEEYKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhh-------cchhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence 4589999999999999999999999999999998888652 12222222211 112444555543 22334
Q ss_pred EEEecCCccccchhhHHhh---cccEEEEecCCcceecc-cCCCCChhHH---------HHHHHHHhhcccccceeeeHH
Q 023776 167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESEL---------FALYKEMRDGYATADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~---~~~vV~L~~~~e~l~~R-~~R~l~~~~l---------~~~~~~r~~~y~~Ad~vId~~ 233 (277)
||. -+..++.. .++||.|.||.+++.+| ..|+.++..+ ..++++-...|. +++|+.++
T Consensus 79 IVD--------yHgCd~FperwfdlVvVLr~~~s~LY~RL~sRgY~e~Ki~eNiecEIfgv~~eea~eSy~-~~iV~eL~ 149 (176)
T KOG3347|consen 79 IVD--------YHGCDFFPERWFDLVVVLRTPNSVLYDRLKSRGYSEKKIKENIECEIFGVVLEEARESYS-PKIVVELQ 149 (176)
T ss_pred EEe--------ecccCccchhheeEEEEEecCchHHHHHHHHcCCCHHHHhhhcchHHHHHHHHHHHHHcC-CcceeecC
Confidence 443 33344332 57999999999999999 8888765433 334444445554 57888875
No 56
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=2e-12 Score=112.64 Aligned_cols=153 Identities=16% Similarity=0.087 Sum_probs=96.3
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C-hhHHHHhhhhhhhhh----------------hHHH-HH
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G-ESAAKAFRESDEKGY----------------QQAE-TE 155 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~-~~i~~i~~~~g~~~f----------------r~~e-~~ 155 (277)
.|+|+|++||||||+++.|++ +|+.++|+|.+.++.+. + .....+...+|...+ .+.+ ..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 79999999999887763 1 112233333443222 1111 11
Q ss_pred HHHHhh---------------hcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHHHH
Q 023776 156 VLKQLS---------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALYKE 218 (277)
Q Consensus 156 vl~~l~---------------~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~~ 218 (277)
.|.++. ..+..||... ..+.+..+.. .++.+||+++|.+++.+| ..| +++.+++..++..
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~--pLL~E~~~~~-~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~ 156 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQTTAEGKLVIWEV--PLLFETDAYT-LCDATVTVDSDPEESILRTISRDGMKKEDVLARIAS 156 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEEEe--eeeeEcCchh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 111111 0122233211 1122222221 258999999999999999 555 7888888777765
Q ss_pred Hhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 219 MRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 219 r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+.+..+ .||++|+| +.+.+++..+|.+.++.+.
T Consensus 157 Q~~~~~k~~~aD~vI~N-------------~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 157 QLPITEKLKRADYIVRN-------------DGNREGLKEECKILYSTLL 192 (196)
T ss_pred cCCHHHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHH
Confidence 444322 49999998 4688998888888776554
No 57
>PLN02200 adenylate kinase family protein
Probab=99.36 E-value=1.8e-12 Score=115.76 Aligned_cols=159 Identities=10% Similarity=0.103 Sum_probs=93.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-h----hHHHHhhhhhhhhhhHHHHHHHH-Hhhh-cCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-E----SAAKAFRESDEKGYQQAETEVLK-QLSS-MGR 165 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-~----~i~~i~~~~g~~~fr~~e~~vl~-~l~~-~~~ 165 (277)
+.+|+|+|+|||||||+|+.|++.+|+.++++++++++.... . .+.+... .|...-.+....++. .+.. ...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence 478999999999999999999999999999998888664321 1 1112111 122222222222222 2221 112
Q ss_pred EEEEecCCccccchhhHHh------hcccEEEEecCCcceecc-cCCCC---C--hhHHHHHHHH----Hhh---ccccc
Q 023776 166 LVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHSGF---P--ESELFALYKE----MRD---GYATA 226 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L------~~~~vV~L~~~~e~l~~R-~~R~l---~--~~~l~~~~~~----r~~---~y~~A 226 (277)
.+|-. |.+........+ ..+.+|||++|.+++.+| .+|+. + .+.+...++. ..| .|...
T Consensus 122 ~~ILD--G~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~ 199 (234)
T PLN02200 122 KFLID--GFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKK 199 (234)
T ss_pred eEEec--CCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222 333322222222 256899999999999999 55532 1 2333332221 122 23322
Q ss_pred c--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHH
Q 023776 227 D--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 267 (277)
Q Consensus 227 d--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~ 267 (277)
+ +.||. +.+++++.+.|.+.+....+.|
T Consensus 200 ~~~~~IDa-------------~~~~eeV~~~v~~~l~~~~~~~ 229 (234)
T PLN02200 200 GKLYTINA-------------VGTVDEIFEQVRPIFAACEAMK 229 (234)
T ss_pred CCEEEEEC-------------CCCHHHHHHHHHHHHHHcCCcc
Confidence 2 55665 5799999999999998887765
No 58
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.36 E-value=6.6e-13 Score=113.63 Aligned_cols=151 Identities=18% Similarity=0.267 Sum_probs=92.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..|+|+|++||||||+++.|+..+. ..+++.|.+...+.++.. +-.+.....++.+ ..+...+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~G~~ 92 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLG---FSEEDRKENIRRI-GEVAKLFVRNGII 92 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccC---CCHHHHHHHHHHH-HHHHHHHHcCCCE
Confidence 578999999999999999999998873 457888887655433110 1111222233322 1223344455666
Q ss_pred EEEecCCccccchhhHHhh------cccEEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc--ccceeeeHHH
Q 023776 167 VVCAGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA--TADVTVSLQK 234 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~------~~~vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~--~Ad~vId~~~ 234 (277)
||.+.. -.....+..++ ..++|||++|.+.+.+|+.+++- .+++..+...+.++|. .||++||+
T Consensus 93 VI~d~~--~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl~Idt-- 168 (184)
T TIGR00455 93 VITSFI--SPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEVVLDT-- 168 (184)
T ss_pred EEEecC--CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcEEEEC--
Confidence 665431 12223333332 13679999999999999545431 2233334444455553 48999987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
++.++++++++|++++
T Consensus 169 ----------~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 169 ----------DQNDREECVGQIIEKL 184 (184)
T ss_pred ----------CCCCHHHHHHHHHHhC
Confidence 4689999999988753
No 59
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=2.9e-12 Score=112.33 Aligned_cols=156 Identities=14% Similarity=0.087 Sum_probs=95.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-hh-HHHHhhhhhhhh--------------------hh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ES-AAKAFRESDEKG--------------------YQ 150 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-~~-i~~i~~~~g~~~--------------------fr 150 (277)
+..|+|||++||||||+++.|++ +|++++|+|.+.++.+.. .. ...+...+|... |.
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~ 83 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFS 83 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhC
Confidence 46799999999999999999987 899999999988776531 11 111111122111 21
Q ss_pred HHH-HHHHHHhh----------------hcC-cEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCCC-CChh
Q 023776 151 QAE-TEVLKQLS----------------SMG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSG-FPES 210 (277)
Q Consensus 151 ~~e-~~vl~~l~----------------~~~-~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~-l~~~ 210 (277)
+.+ ...|.++. ..+ ..|+.. . ..+....+.. .++.+|++++|.+++.+| ..|+ .+.+
T Consensus 84 ~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e-~-pLL~e~~~~~-~~d~ii~V~a~~e~~~~Rl~~R~~~s~e 160 (208)
T PRK14731 84 DPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKE-A-AILFESGGDA-GLDFIVVVAADTELRLERAVQRGMGSRE 160 (208)
T ss_pred CHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEE-e-eeeeecCchh-cCCeEEEEECCHHHHHHHHHHcCCCCHH
Confidence 110 01111111 111 233321 1 1222222211 157899999999999999 6664 4667
Q ss_pred HHHHHHHHHhhcc---cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 211 ELFALYKEMRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 211 ~l~~~~~~r~~~y---~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.+.++++.+.+.. +.+|++|++ +.+++++..+|.+.++.+.+
T Consensus 161 ~~~~Ri~~q~~~~~~~~~ad~vI~N-------------~g~~e~l~~~i~~~~~~~~~ 205 (208)
T PRK14731 161 EIRRRIAAQWPQEKLIERADYVIYN-------------NGTLDELKAQTEQLYQVLLQ 205 (208)
T ss_pred HHHHHHHHcCChHHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 7776665443322 248999987 57899999999888877653
No 60
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.35 E-value=1.6e-12 Score=110.49 Aligned_cols=154 Identities=20% Similarity=0.202 Sum_probs=87.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhh----hccCcchhhhhcCC-----hhHHHHhhhhhhhhhhHH---------HH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYY----YFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQA---------ET 154 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~----~iD~D~li~~~~g~-----~~i~~i~~~~g~~~fr~~---------e~ 154 (277)
+..|+|+|++||||||+++.|+..++.. ++..+.-.....++ .+..+++...+...|... ..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 80 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIP 80 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccCh
Confidence 3578999999999999999999877532 21110000000010 111222221111111100 01
Q ss_pred HHHHHhhhcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCCCC-ChhHHHHHHHHHhhccc--cccee-
Q 023776 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF-PESELFALYKEMRDGYA--TADVT- 229 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~l-~~~~l~~~~~~r~~~y~--~Ad~v- 229 (277)
..+......+..||.+|++.+. ...+..+....+|||++|.+++.+| ..|+. +.+.+...+. +.+.|. .+|++
T Consensus 81 ~~i~~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~~~~~~~~~rl~-~~~~~~~~~~~~~v 158 (179)
T TIGR02322 81 AEIDQWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGRESREEIEERLA-RSARFAAAPADVTT 158 (179)
T ss_pred HHHHHHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH-HHhhcccccCCEEE
Confidence 1233333455677877765433 2333333356899999999999999 55543 3455666553 455554 47776
Q ss_pred eeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 230 VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 230 Id~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|++ +.++++++.+|.+.+.
T Consensus 159 i~~-------------~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 159 IDN-------------SGSLEVAGETLLRLLR 177 (179)
T ss_pred EeC-------------CCCHHHHHHHHHHHHc
Confidence 544 5789999999988775
No 61
>PRK14531 adenylate kinase; Provisional
Probab=99.34 E-value=7.2e-12 Score=107.44 Aligned_cols=152 Identities=14% Similarity=0.131 Sum_probs=85.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CChhHHHHhh---hhhhhhhhHHHHHHHH-Hhhh--cCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFR---ESDEKGYQQAETEVLK-QLSS--MGR 165 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~~~i~~i~~---~~g~~~fr~~e~~vl~-~l~~--~~~ 165 (277)
.+.|+|+|+|||||||+|+.||+.+|+.++++++++++.. ++........ ..|...--.+-..++. .+.. ...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~g 81 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSGG 81 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCCc
Confidence 3579999999999999999999999999999988776543 2122211111 1232111111111121 2221 223
Q ss_pred EEEEecCCccccchhhHH----hh-----cccEEEEecCCcceecc-cCCCCC---hhHHHHHH----HHHhh---cccc
Q 023776 166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGFP---ESELFALY----KEMRD---GYAT 225 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~----L~-----~~~vV~L~~~~e~l~~R-~~R~l~---~~~l~~~~----~~r~~---~y~~ 225 (277)
.||. |++........ +. .+.+|||++|.+++.+| ..|+.+ ++.+...+ +...| .|..
T Consensus 82 ~ilD---Gfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~ 158 (183)
T PRK14531 82 WLLD---GFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQ 158 (183)
T ss_pred EEEe---CCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4442 34433222221 21 25699999999999999 666542 22232222 22222 2222
Q ss_pred cc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 226 AD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 226 Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
.+ .+||. +.+++++..+|...+
T Consensus 159 ~~~~~~id~-------------~~~~~~v~~~i~~~l 182 (183)
T PRK14531 159 RGLLQSVEA-------------QGSIEAITERIEKVL 182 (183)
T ss_pred cCCEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 22 45554 578888888887765
No 62
>PRK02496 adk adenylate kinase; Provisional
Probab=99.32 E-value=6.4e-12 Score=107.40 Aligned_cols=150 Identities=18% Similarity=0.169 Sum_probs=87.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Ch----hHHHHhhhhhhhhhhHHHHHHHHHhhhc----C
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLKQLSSM----G 164 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~----~i~~i~~~~g~~~fr~~e~~vl~~l~~~----~ 164 (277)
+.|+|+|+|||||||+|+.|++.+|+.+++.|+++++... +. .+..++. .|.....+....++.+.... .
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~-~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMD-KGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccC
Confidence 5699999999999999999999999999999888876542 11 1222221 23322223333333322211 1
Q ss_pred cEEEEecCCccccchhhH----Hh-----hcccEEEEecCCcceecc-cCCCC---ChhHHHHHHHHHhh-------ccc
Q 023776 165 RLVVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM-DHSGF---PESELFALYKEMRD-------GYA 224 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~----~L-----~~~~vV~L~~~~e~l~~R-~~R~l---~~~~l~~~~~~r~~-------~y~ 224 (277)
..|+ .| ++-...... .+ ..+.+|||++|.+++.+| ..|+. .++.+.++++.+.. .|+
T Consensus 81 g~vl-dG--fPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~ 157 (184)
T PRK02496 81 GWIL-DG--FPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYR 157 (184)
T ss_pred CEEE-eC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 33 322211111 11 146899999999999999 55543 23444444333222 333
Q ss_pred ccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 225 TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 225 ~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
..+ +.||. +.+++++.++|...+
T Consensus 158 ~~~~~~~Ida-------------~~~~~~V~~~i~~~l 182 (184)
T PRK02496 158 DRQKLLTIDG-------------NQSVEAVTTELKAAL 182 (184)
T ss_pred hcCCEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 222 55665 578999999988766
No 63
>PRK06217 hypothetical protein; Validated
Probab=99.32 E-value=5e-12 Score=108.35 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=64.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|+|||||||+|+.|++.+|++++|.|.++++..+ .+ +...+...+ .+..++..+......||+ |
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~-~~----~~~~~~~~~--~~~~~~~~~~~~~~~vi~-G-- 71 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD-PP----FTTKRPPEE--RLRLLLEDLRPREGWVLS-G-- 71 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC-CC----ccccCCHHH--HHHHHHHHHhcCCCEEEE-c--
Confidence 5699999999999999999999999999999999876443 11 101111111 122334444334456665 3
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R 202 (277)
.... .....+. .+.+|||++|.+++.+|
T Consensus 72 ~~~~-~~~~~~~~~d~~i~Ld~~~~~~~~R 100 (183)
T PRK06217 72 SALG-WGDPLEPLFDLVVFLTIPPELRLER 100 (183)
T ss_pred cHHH-HHHHHHhhCCEEEEEECCHHHHHHH
Confidence 2221 1111222 68899999999999998
No 64
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.31 E-value=3.3e-12 Score=109.20 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=83.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhh----------------hhHHH-HH
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG----------------YQQAE-TE 155 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~----------------fr~~e-~~ 155 (277)
.|+|+|++||||||+++.|++ +|++++|+|.+.++.+. .....++...+|... |.+.+ ..
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999998 99999999999888764 122233333333321 22111 01
Q ss_pred HHHHhh-------------hc--CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHHHH
Q 023776 156 VLKQLS-------------SM--GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALYKE 218 (277)
Q Consensus 156 vl~~l~-------------~~--~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~~ 218 (277)
.+.++. .. ...++..+ ..+....+.. ..+.+||++||.+++.+| ..| +++.+++..++..
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~~~~~~~vive~--plL~e~~~~~-~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~~ 156 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAEARKEKVVVLDI--PLLFETGLEK-LVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIAS 156 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCEEEEEe--hHhhcCCcHH-hCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 111111 11 12333321 1222222211 257999999999999999 445 7888887777665
Q ss_pred Hhhcc---cccceeeeHH
Q 023776 219 MRDGY---ATADVTVSLQ 233 (277)
Q Consensus 219 r~~~y---~~Ad~vId~~ 233 (277)
+.+.- ..||++|+|+
T Consensus 157 Q~~~~~~~~~aD~vI~N~ 174 (179)
T cd02022 157 QMPLEEKRARADFVIDNS 174 (179)
T ss_pred cCCHHHHHHhCCEEEECc
Confidence 54432 2499999984
No 65
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.31 E-value=8.7e-12 Score=109.50 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=65.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhh---cCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---MGR 165 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~---~~~ 165 (277)
.|+|+|+|||||||+|+.||+.+|+.+++.++++++.... ..+.+++. .|.....+....++. .+.. ...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~g 80 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKNG 80 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccCC
Confidence 6999999999999999999999999999998888765321 12233332 233222233233333 2222 113
Q ss_pred EEEEecCCccccchhhHHh----h-----cccEEEEecCCcceecc-cCC
Q 023776 166 LVVCAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L----~-----~~~vV~L~~~~e~l~~R-~~R 205 (277)
.||. |++........+ . .+.+|+|++|.+++.+| ..|
T Consensus 81 ~VlD---GfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R 127 (215)
T PRK00279 81 FLLD---GFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGR 127 (215)
T ss_pred EEEe---cCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCC
Confidence 4443 333322222222 1 34799999999999998 444
No 66
>PRK08356 hypothetical protein; Provisional
Probab=99.31 E-value=1e-11 Score=107.51 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=88.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhH----H---------HHhhhhhhhhhhH---HH-
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESA----A---------KAFRESDEKGYQQ---AE- 153 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i----~---------~i~~~~g~~~fr~---~e- 153 (277)
.+.|+|+|+|||||||+|+.|++ +|+.++..++.+..... +... . +-+-+.|.. .++ .+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~-~~~~yG~~~ 82 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRY-LKEKYGEDI 82 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHH-HHHhcCcHH
Confidence 46899999999999999999965 89988888764432111 0000 0 001111110 010 01
Q ss_pred --HHHHHHhhhcCcEEEEecCCccccchhhHHhh--cccEEEEecCCcceecc-cCCCC-------ChhHHHHHHHHHhh
Q 023776 154 --TEVLKQLSSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHSGF-------PESELFALYKEMRD 221 (277)
Q Consensus 154 --~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~--~~~vV~L~~~~e~l~~R-~~R~l-------~~~~l~~~~~~r~~ 221 (277)
..++..+.... .++.. |+ .....++.++ .+.+|||++|.+++.+| ..|+. +.+.+..+...+..
T Consensus 83 ~~~~~~~~~~~~~-~ivid--G~-r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~ 158 (195)
T PRK08356 83 LIRLAVDKKRNCK-NIAID--GV-RSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEK 158 (195)
T ss_pred HHHHHHHHhccCC-eEEEc--Cc-CCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 11222331112 23333 33 3344555554 36899999999999999 44432 34455555544433
Q ss_pred cc------cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 222 GY------ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 222 ~y------~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.| +.||++|++ +.+.+++..+|.+.+..+
T Consensus 159 l~~~~~~~~~aD~vI~N-------------~~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 159 LYHTTKLKDKADFVIVN-------------EGTLEELRKKVEEILREL 193 (195)
T ss_pred hhhhhhHHHhCcEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 33 249999976 468899998888888754
No 67
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.29 E-value=4.3e-12 Score=128.22 Aligned_cols=153 Identities=15% Similarity=0.244 Sum_probs=100.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..|+++|+|||||||+|+.|++.|+ +.++|.|.+...+.++.. +-.+.....++.. ..+...+...+..
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~---~~~~~r~~~~~~l-~~~a~~~~~~G~~ 534 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLG---FSDADRVENIRRV-AEVARLMADAGLI 534 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCC---CCHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence 589999999999999999999999984 477999998765443111 1122223334333 1222233334444
Q ss_pred EEEecCCccccchhhHHhh-----cc-cEEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc--ccceeeeHHH
Q 023776 167 VVCAGNGAVQSSANLALLR-----HG-ISLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA--TADVTVSLQK 234 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~-----~~-~vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~--~Ad~vId~~~ 234 (277)
||.+. .......++.++ .. .+|||++|.+.+.+|+.||+- .+++..++..+.+++. .+|++||+
T Consensus 535 Vivda--~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~-- 610 (632)
T PRK05506 535 VLVSF--ISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDT-- 610 (632)
T ss_pred EEEEC--CCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeC--
Confidence 55432 112223333332 22 789999999999999667752 3556666667777442 47899987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++++..
T Consensus 611 ----------~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 611 ----------TGRSPEELAEQVLELLRR 628 (632)
T ss_pred ----------CCCCHHHHHHHHHHHHHH
Confidence 378999999999999864
No 68
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.28 E-value=5.7e-12 Score=103.97 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=74.3
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-----CChhHHHHhhhhhhhhhhHHHHHHHHHhh-hcCcEEE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-----GGESAAKAFRESDEKGYQQAETEVLKQLS-SMGRLVV 168 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-----g~~~i~~i~~~~g~~~fr~~e~~vl~~l~-~~~~~VI 168 (277)
+|+|+|+|||||||+|+.|++.+++.++|.|.+..... .+... ....++.++..........+. ....+|+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~vVi 77 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPL---NDEDRWPWLQALTDALLAKLASAGEGVVV 77 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCC---CccchhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999999999999999876421 11111 111123334444333333332 2334566
Q ss_pred EecCCccccchhhHHhh------cccEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhh
Q 023776 169 CAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRD 221 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L~------~~~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~ 221 (277)
.++. .....+..+. ...+|||++|.+++.+| ..|. .+.+.+..+++...+
T Consensus 78 d~~~---~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (150)
T cd02021 78 ACSA---LKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARKGHFMPADLLDSQFETLEP 137 (150)
T ss_pred Eecc---ccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence 5432 2233343333 12589999999999999 5552 344556666655443
No 69
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.28 E-value=1.1e-11 Score=101.01 Aligned_cols=115 Identities=19% Similarity=0.270 Sum_probs=69.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNGA 174 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g~ 174 (277)
.|+|+|++||||||+|+.|++.+|++++|.|.+..+..+ ....... ....+.+.-.+.+.++.....+|+. |...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~-~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vid-g~~~ 75 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVG-KLASEVA---AIPEVRKALDERQRELAKKPGIVLE-GRDI 75 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHH-HHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEE-eeee
Confidence 489999999999999999999999999999965444322 1001100 0111222222333444444445553 2211
Q ss_pred cccchhhHHhh-cccEEEEecCCcceecc--c-----CCCCChhHHHHHHHHH
Q 023776 175 VQSSANLALLR-HGISLWIDVPPGMVARM--D-----HSGFPESELFALYKEM 219 (277)
Q Consensus 175 v~~~~~~~~L~-~~~vV~L~~~~e~l~~R--~-----~R~l~~~~l~~~~~~r 219 (277)
.+..+. .+++|||++|++.+.+| . .++++.+++.+.+.++
T Consensus 76 -----~~~~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 76 -----GTVVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred -----eeEEcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 011122 57899999999999888 3 3367776665555443
No 70
>PRK14527 adenylate kinase; Provisional
Probab=99.25 E-value=3.7e-11 Score=103.56 Aligned_cols=153 Identities=14% Similarity=0.128 Sum_probs=85.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-ChhHHHHhhh---hhhhhhhHHHHHHHHHhhhc---C
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRE---SDEKGYQQAETEVLKQLSSM---G 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~~i~~i~~~---~g~~~fr~~e~~vl~~l~~~---~ 164 (277)
++..|+|+|+|||||||+|+.|++.+|+.+++.|+++..... +......... .|...-.+.-..++.+.... .
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~~ 84 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEPV 84 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCCC
Confidence 578999999999999999999999999999999888866432 1122111111 12111111112222222221 2
Q ss_pred cEEEEecCCccccchhhHH----hh-----cccEEEEecCCcceecc-cCCCC----C---hhHHHHHHHHH----hh--
Q 023776 165 RLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHSGF----P---ESELFALYKEM----RD-- 221 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~----L~-----~~~vV~L~~~~e~l~~R-~~R~l----~---~~~l~~~~~~r----~~-- 221 (277)
..|+. |++-....... +. ...+|||++|.+++.+| .+|+. + .+.+...++.+ .|
T Consensus 85 ~~VlD---Gfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~ 161 (191)
T PRK14527 85 RVIFD---GFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLV 161 (191)
T ss_pred cEEEc---CCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHH
Confidence 23442 34332222221 11 34689999999999999 55532 1 22333332222 12
Q ss_pred -cccccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 222 -GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 222 -~y~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
.|..-. ..||. +.+++++.++|...+
T Consensus 162 ~~y~~~~~~~~id~-------------~~~~~~v~~~i~~~l 190 (191)
T PRK14527 162 DYYEARGHLKRVDG-------------LGTPDEVYARILKAL 190 (191)
T ss_pred HHHHhcCCEEEEEC-------------CCCHHHHHHHHHHhh
Confidence 232222 45553 578888888887764
No 71
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.23 E-value=3.4e-11 Score=101.71 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=83.9
Q ss_pred eeccchHHhhhhHHHHhhhhhhhccCcchhh-----h-hcCChhHHHHhhhhh-hhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 99 VGMNNAIKTHLGKFLADALRYYYFDSDSLVF-----E-AAGGESAAKAFRESD-EKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 99 ~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~-----~-~~g~~~i~~i~~~~g-~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
+|++||||||+++.|++.+|..++|.|.+.. . ..| .. +...+ ..+....+...+......+..||.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s 75 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EP----LNDDDRKPWLQALNDAAFAMQRTNKVSLIVCS 75 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCC-CC----CChhhHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5999999999999999999999999997532 1 112 11 11111 12222222222222222233344432
Q ss_pred CCccccchhhHHhh----cccEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhccc-ccc-eeeeHHHHHhHhCC
Q 023776 172 NGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYA-TAD-VTVSLQKVASQLGY 241 (277)
Q Consensus 172 ~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~-~Ad-~vId~~~~a~~~~~ 241 (277)
. .....++.++ .-..|||+||.+++.+| ..|. .+.+.+..++....|+.. ..+ ++||+
T Consensus 76 ~---~~~~~r~~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id~--------- 143 (163)
T PRK11545 76 A---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDI--------- 143 (163)
T ss_pred c---chHHHHHHHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcCCCCCCCCCEEEEeC---------
Confidence 2 2234455554 23679999999999999 5552 234555555554444432 123 55665
Q ss_pred CcccccccchhhHHHHHHHHH
Q 023776 242 DDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 242 ~dts~~t~eeva~~Il~~i~~ 262 (277)
..++++++..++.++.+
T Consensus 144 ----~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 144 ----DQPLEGVVASTIEVIKK 160 (163)
T ss_pred ----CCCHHHHHHHHHHHHHH
Confidence 46788999888888853
No 72
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.22 E-value=4.3e-11 Score=104.70 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=63.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhh----cC
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS----MG 164 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~----~~ 164 (277)
.|+|+|+|||||||+|+.||+.+|+.++++++++++.... ..+.++.. .|...-.+.-..++. .+.. ..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 3899999999999999999999999999998888765431 11222221 222111111122222 2222 11
Q ss_pred cEEEEecCCccccchhhHHh------hcccEEEEecCCcceecc-cCC
Q 023776 165 RLVVCAGNGAVQSSANLALL------RHGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L------~~~~vV~L~~~~e~l~~R-~~R 205 (277)
..|| . |++-.......+ ..+.+|||++|.+++.+| ..|
T Consensus 80 ~~il-D--GfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 80 GFIL-D--GFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGR 124 (210)
T ss_pred cEEE-e--CCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCC
Confidence 2333 2 233322222222 246899999999999998 444
No 73
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.22 E-value=1.1e-10 Score=103.71 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=35.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
..+|+|+|++||||||+|+.||+.||+.++|.|.+++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57899999999999999999999999999999997654
No 74
>PRK08233 hypothetical protein; Provisional
Probab=99.22 E-value=3e-11 Score=102.17 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=80.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-hhhccCcchhhhhcCChhHHHHhhhhhhh----hhhHHHHHHHHHhhhcC--
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLVFEAAGGESAAKAFRESDEK----GYQQAETEVLKQLSSMG-- 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-~~~iD~D~li~~~~g~~~i~~i~~~~g~~----~fr~~e~~vl~~l~~~~-- 164 (277)
++..|+|+|++||||||+|+.|++.|+ ...+..|.+...... ..+..+.. .+.. ..... ...++++....
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~~~~~ 78 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCP-EDICKWID-KGANYSEWVLTPL-IKDIQELIAKSNV 78 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCc-hhhhhhhh-ccCChhhhhhHHH-HHHHHHHHcCCCc
Confidence 357899999999999999999999986 222222322111111 11111111 1111 01111 11233333222
Q ss_pred cEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCCCC---Ch----hHHHHHHHHHhhccc--------ccce
Q 023776 165 RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF---PE----SELFALYKEMRDGYA--------TADV 228 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~l---~~----~~l~~~~~~r~~~y~--------~Ad~ 228 (277)
..||..+.-....+.... ..+.+|||++|.+++.+| ..|.. .. +.+...+....+.|. .+++
T Consensus 79 ~~vivd~~~~~~~~~~~~--~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 156 (182)
T PRK08233 79 DYIIVDYPFAYLNSEMRQ--FIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPNADI 156 (182)
T ss_pred eEEEEeeehhhccHHHHH--HcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcCccCCeE
Confidence 345543321111111111 157999999999998877 33321 11 223344444444442 3678
Q ss_pred eeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 229 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 229 vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+||+ +.+++++.++|.+.+..
T Consensus 157 vId~-------------~~~~e~i~~~i~~~l~~ 177 (182)
T PRK08233 157 VLDG-------------ALSVEEIINQIEEELYR 177 (182)
T ss_pred EEcC-------------CCCHHHHHHHHHHHHHh
Confidence 8875 57899999999888763
No 75
>PRK14528 adenylate kinase; Provisional
Probab=99.22 E-value=3.2e-11 Score=103.95 Aligned_cols=39 Identities=21% Similarity=0.268 Sum_probs=35.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~ 132 (277)
+.|+|+|+|||||||+|+.|++.+|+.++++|+++++..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 569999999999999999999999999999999987654
No 76
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.21 E-value=8.1e-11 Score=107.86 Aligned_cols=126 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh-hhhhccCcchhhhhcCChhHHH-HhhhhhhhhhhHHHHHHHHHhhhcCc-EEEE
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSSMGR-LVVC 169 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li~~~~g~~~i~~-i~~~~g~~~fr~~e~~vl~~l~~~~~-~VIa 169 (277)
+.+|+++|+|||||||+|+.|++.+ ++.++|.|.+.+...+...... .+...++..........+......+. +||+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid 81 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIIS 81 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEe
Confidence 4789999999999999999999999 8999999998766544111000 11111222222222333333333334 4554
Q ss_pred ecCCccccchhhHH-hh-cc---cEEEEecCCcceecc-cCCC---CChhHHHHHHHH
Q 023776 170 AGNGAVQSSANLAL-LR-HG---ISLWIDVPPGMVARM-DHSG---FPESELFALYKE 218 (277)
Q Consensus 170 ~g~g~v~~~~~~~~-L~-~~---~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~ 218 (277)
+..........+.. ++ .+ .+|||++|.+++.+| .+|+ .+.+.+..+++.
T Consensus 82 ~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~~~~~ 139 (300)
T PHA02530 82 DTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRSMFKQ 139 (300)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHHHHHH
Confidence 33221111222222 22 22 369999999999999 5563 466777755443
No 77
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.18 E-value=1.4e-10 Score=102.63 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=34.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
.+.|.|+|++||||||+++.|++++|+.++|+|.+.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~ 39 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence 36899999999999999999999999999999987644
No 78
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.18 E-value=1.4e-10 Score=99.18 Aligned_cols=151 Identities=16% Similarity=0.237 Sum_probs=89.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChhHHHHhhhhhhhhhhHHHHHHHHHhhh-cC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSS-MG 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~-~~ 164 (277)
.+..++|+|++||||||+++.|+..++..++|.|.+.... .| .. +.......|...-..+...+.. ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g-~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQG-IP----LTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcC-CC----CCcccchHHHHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999864221 11 11 1111111122211111111111 12
Q ss_pred cEEEEecCCccccchhhHHhh----cccEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhccc-ccc-eeeeHHH
Q 023776 165 RLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYA-TAD-VTVSLQK 234 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~-~Ad-~vId~~~ 234 (277)
..+|.+. .+....++.++ .-..|||++|.+++.+| ..|. ++.+.+..+++...+... ..+ +.||+
T Consensus 77 ~g~iv~s---~~~~~~R~~~r~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e~~~~~e~~~~~~d~-- 151 (176)
T PRK09825 77 TGFIVCS---SLKKQYRDILRKSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDV-- 151 (176)
T ss_pred CEEEEEE---ecCHHHHHHHHhhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcCCCCCCcCCeEEEEC--
Confidence 2223232 12344455554 22689999999999999 6663 344556666554444422 234 56776
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
+.+++++++.+...+..+
T Consensus 152 -----------~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 152 -----------NHDIENVTEQCRQAVQAF 169 (176)
T ss_pred -----------CCCHHHHHHHHHHHHHHH
Confidence 467788888888887654
No 79
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.15 E-value=1.5e-10 Score=100.04 Aligned_cols=154 Identities=17% Similarity=0.125 Sum_probs=99.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Chh-HHHHhhhhhh----------------hhhhHHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GES-AAKAFRESDE----------------KGYQQAETE 155 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~~-i~~i~~~~g~----------------~~fr~~e~~ 155 (277)
..|.|||..|||||||++.+. ++|++.||+|.+.++... |.+ ...+.+.+|. ..|.+.+..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 478999999999999999996 799999999999887653 111 1122222222 233322211
Q ss_pred -HH-------------HHh----hhcCcEEEEecCCccc-cchhhHHhh-cccEEEEecCCcceecc-cCC-CCChhHHH
Q 023776 156 -VL-------------KQL----SSMGRLVVCAGNGAVQ-SSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESELF 213 (277)
Q Consensus 156 -vl-------------~~l----~~~~~~VIa~g~g~v~-~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~ 213 (277)
++ +++ +...+.||- .+++ .+. .+++ .+.+|.+.||.+...+| ..| +++++..+
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivl---DiPLLFE~--~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe 155 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVL---DIPLLFEA--KLLKICHKTVVVTCDEELQLERLVERDELSEEDAE 155 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEE---echHHHHH--hHHhheeeEEEEEECcHHHHHHHHHhccccHHHHH
Confidence 11 111 122232222 1222 222 2233 56789999999999999 555 57888888
Q ss_pred HHHHHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHH
Q 023776 214 ALYKEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 266 (277)
Q Consensus 214 ~~~~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~ 266 (277)
++...+.|.-+ .||++||| |.++++.-++|...+....+.
T Consensus 156 ~Rl~sQmp~~~k~~~a~~Vi~N-------------ng~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220|consen 156 NRLQSQMPLEKKCELADVVIDN-------------NGSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred HHHHhcCCHHHHHHhhheeecC-------------CCChHHHHHHHHHHHHHhcch
Confidence 88877777643 49999998 788888888888777665554
No 80
>PRK14526 adenylate kinase; Provisional
Probab=99.15 E-value=1.8e-10 Score=101.37 Aligned_cols=104 Identities=11% Similarity=0.146 Sum_probs=62.9
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHHHhhh----cCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSS----MGR 165 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~----~~~ 165 (277)
.|+|+|+|||||||+++.|++.+|+.++++++++++... + ..+.+++. .|....-+.-..++.+-+. ...
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~g 80 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNNDN 80 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccCc
Confidence 589999999999999999999999999999999876432 1 22344443 2332222222222222221 122
Q ss_pred EEEEecCCccccchhhHHhh----cccEEEEecCCcceecc
Q 023776 166 LVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R 202 (277)
.|+. |++-.......+. ...+|+|++|.+++.+|
T Consensus 81 ~ilD---GfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R 118 (211)
T PRK14526 81 FILD---GFPRNINQAKALDKFLPNIKIINFLIDEELLIKR 118 (211)
T ss_pred EEEE---CCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 3442 3333222223332 23578899999999998
No 81
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.14 E-value=1.3e-10 Score=106.87 Aligned_cols=138 Identities=18% Similarity=0.223 Sum_probs=82.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCc--EEEE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR--LVVC 169 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~--~VIa 169 (277)
....|+|+|++||||||+++.|++ +|+.++|.-.. . ++.. |.+ .+.+-..... .+++
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~d~~~~--~---------L~~~-----l~~----~~~~~~~~~~~av~iD 63 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGYYCVDNLPP--S---------LLPK-----LVE----LLAQSGGIRKVAVVID 63 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCCeEECCcCH--H---------HHHH-----HHH----HHHhcCCCCCeEEEEc
Confidence 456899999999999999999964 68887765221 1 1110 100 0011000112 2222
Q ss_pred ecCCccc--cchhhHHhh-cc---cEEEEecCCcceecc--c---CCCCC--hhHHHHHHHHH---hhcccccceeeeHH
Q 023776 170 AGNGAVQ--SSANLALLR-HG---ISLWIDVPPGMVARM--D---HSGFP--ESELFALYKEM---RDGYATADVTVSLQ 233 (277)
Q Consensus 170 ~g~g~v~--~~~~~~~L~-~~---~vV~L~~~~e~l~~R--~---~R~l~--~~~l~~~~~~r---~~~y~~Ad~vId~~ 233 (277)
....... ..+++..|+ .+ .+|||+++.+++.+| . +||+. ....+.+.++| .|.|+.||++|||
T Consensus 64 ~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~~~l~e~I~~eR~~l~pl~~~ADivIDT- 142 (288)
T PRK05416 64 VRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGDGSLLEGIELERELLAPLRERADLVIDT- 142 (288)
T ss_pred cCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCCccHHHHHHHHHhhhhhHHHhCCEEEEC-
Confidence 2111111 123444554 34 579999999999999 2 34552 22334455555 3445569999987
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|.+.+..
T Consensus 143 -----------s~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 143 -----------SELSVHQLRERIRERFGG 160 (288)
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 588999999999988854
No 82
>PRK06547 hypothetical protein; Provisional
Probab=99.14 E-value=2.9e-11 Score=103.26 Aligned_cols=113 Identities=23% Similarity=0.274 Sum_probs=70.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC----hhHHHHhhhhhhhhhhHH--HHHHHHH--hhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG----ESAAKAFRESDEKGYQQA--ETEVLKQ--LSSM 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~----~~i~~i~~~~g~~~fr~~--e~~vl~~--l~~~ 163 (277)
+...|+|+|++||||||+|+.|++.+++.+++.|++.....+- ..+.+.+...|+..+... ....... ....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~ 93 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP 93 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence 4678899999999999999999999999999999887643220 012222322333222110 0000000 1112
Q ss_pred CcEEEEecCCccccchhhHHhh-cc--cEEEEecCCcceecc-cCC
Q 023776 164 GRLVVCAGNGAVQSSANLALLR-HG--ISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 164 ~~~VIa~g~g~v~~~~~~~~L~-~~--~vV~L~~~~e~l~~R-~~R 205 (277)
...||..|.+.. .+..++.+. ++ +.|||++|.+++.+| ..|
T Consensus 94 ~~vVIvEG~~al-~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~R 138 (172)
T PRK06547 94 GRRLIIEGVGSL-TAANVALASLLGEVLTVWLDGPEALRKERALAR 138 (172)
T ss_pred CCeEEEEehhhc-cHHHHHHhccCCCEEEEEEECCHHHHHHHHHhc
Confidence 346777776654 345555553 33 789999999999999 666
No 83
>PLN02459 probable adenylate kinase
Probab=99.13 E-value=2.7e-10 Score=103.16 Aligned_cols=105 Identities=10% Similarity=0.105 Sum_probs=64.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhh-----
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLK-QLSS----- 162 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~----- 162 (277)
+.|+|+|+|||||||+|+.|++.+|+.++++++++++... + ..+.++.. .|...--++-..++. ++..
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~-~G~lVPdeiv~~ll~~~l~~~~~~~ 108 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVN-QGKLVPDEIIFSLLSKRLEAGEEEG 108 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHH-cCCccCHHHHHHHHHHHHhcccccC
Confidence 6789999999999999999999999999999998876532 1 12222222 233222222222222 2221
Q ss_pred cCcEEEEecCCccccchhhHHhh----cccEEEEecCCcceecc
Q 023776 163 MGRLVVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R 202 (277)
....|+ . |++-+......|. .+.+|+|++|.+++.+|
T Consensus 109 ~~g~iL-D--GFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~R 149 (261)
T PLN02459 109 ESGFIL-D--GFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEK 149 (261)
T ss_pred CceEEE-e--CCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 111233 2 3443323223332 46899999999999998
No 84
>PRK04040 adenylate kinase; Provisional
Probab=99.12 E-value=1.8e-10 Score=99.62 Aligned_cols=155 Identities=16% Similarity=0.206 Sum_probs=83.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh--hhhhccCcchhhhhcCChhH---HHHhhhhhhh---hhhHHHHHHHHHhhhcC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESA---AKAFRESDEK---GYQQAETEVLKQLSSMG 164 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L--g~~~iD~D~li~~~~g~~~i---~~i~~~~g~~---~fr~~e~~vl~~l~~~~ 164 (277)
++.|+|+|+|||||||+++.|++.+ ++.+++.|+++.+....... .+-+...... .+.......+.++...+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 5789999999999999999999999 89999998886543210000 0111111111 11111112222222222
Q ss_pred cEEEEecCCccccch---------hhHHhhcccEEEEecCCcceecc--c--C--CCC-ChhHHHHHHHH--H-hhccc-
Q 023776 165 RLVVCAGNGAVQSSA---------NLALLRHGISLWIDVPPGMVARM--D--H--SGF-PESELFALYKE--M-RDGYA- 224 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~---------~~~~L~~~~vV~L~~~~e~l~~R--~--~--R~l-~~~~l~~~~~~--r-~~~y~- 224 (277)
..|+ .|..++..+. ....+.++.+|++.+|++.+.+| . . |+. +.+.++...+. . ...|.
T Consensus 82 ~~~~-~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~ 160 (188)
T PRK04040 82 PVIV-DTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAV 160 (188)
T ss_pred CEEE-eeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2444 3332222111 11223367899999999988887 2 2 333 33334332211 1 11222
Q ss_pred ---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 225 ---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 225 ---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
..+++|.|+ +.-+++.++++.+.|
T Consensus 161 ~~g~~~~iI~N~------------d~~~e~a~~~i~~ii 187 (188)
T PRK04040 161 LTGATVKIVENR------------EGLLEEAAEEIVEVL 187 (188)
T ss_pred hcCCeEEEEECC------------CCCHHHHHHHHHHHh
Confidence 256777763 223888888887765
No 85
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.12 E-value=1.6e-10 Score=117.42 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=89.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc----C-ChhHH---HHhh---hh------------hhh--
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA----G-GESAA---KAFR---ES------------DEK-- 147 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~----g-~~~i~---~i~~---~~------------g~~-- 147 (277)
.+.|.|.||+||||||+|+.||++||+.|+|+|.+++... . +.++. .+.+ .. |+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVT 521 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEch
Confidence 4689999999999999999999999999999999876642 0 01110 0100 00 000
Q ss_pred -------------------hhhHHHHHHHHHhhhcCcEEEEecC--CccccchhhHHhhcccEEEEecCCcceecc--c-
Q 023776 148 -------------------GYQQAETEVLKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVARM--D- 203 (277)
Q Consensus 148 -------------------~fr~~e~~vl~~l~~~~~~VIa~g~--g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R--~- 203 (277)
..|+.-....+++...+ .||..|. |.++.|+ .++.|||+++++++++| .
T Consensus 522 ~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~~~~~~-~~v~eGRdigtvv~p~------a~~kifl~a~~~~Ra~Rr~~~ 594 (661)
T PRK11860 522 DAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLP-GLVADGRDMGTVIFPD------AALKVFLTASAEARAERRYKQ 594 (661)
T ss_pred hhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHhhCC-CEEEECCCCccEECCC------CCeEEEEECChhHHHHHHHHH
Confidence 00000001111222222 3444452 3444333 46899999999999998 2
Q ss_pred --CCCC--ChhHHHHHHHHHhhcc--------ccc-c-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 204 --HSGF--PESELFALYKEMRDGY--------ATA-D-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 204 --~R~l--~~~~l~~~~~~r~~~y--------~~A-d-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
.++. +.+++.+-+.+|+..- ..| | ++||+ |++++++++++|++.|++
T Consensus 595 ~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idt------------s~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 595 LISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDN------------SDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred HHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEEC------------CCCCHHHHHHHHHHHHHh
Confidence 3343 4445444444443221 112 3 56655 799999999999999864
No 86
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.11 E-value=2.3e-10 Score=117.11 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=34.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
..|+|.|+|||||||+|+.||+.|||.|+|++.+.+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~ 38 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRA 38 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHH
Confidence 4799999999999999999999999999999988765
No 87
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.11 E-value=7.7e-11 Score=95.85 Aligned_cols=107 Identities=23% Similarity=0.299 Sum_probs=62.6
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHH-HhhhhhhhhhhHHHHHHHHHhhhcCc-EEEEecC
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAK-AFRESDEKGYQQAETEVLKQLSSMGR-LVVCAGN 172 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~-i~~~~g~~~fr~~e~~vl~~l~~~~~-~VIa~g~ 172 (277)
+|+++|+|||||||+++.|++.+++.+++.|.+.....+...... ........ ....-...+......+. +||..+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~~vvd~~- 78 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEER-AYQILNAAIRKALRNGNSVVVDNT- 78 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHH-HHHHHHHHHHHHHHTT-EEEEESS-
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHH-HHHHHHHHHHHHHHcCCCceeccC-
Confidence 488999999999999999999999999999998877665111000 00001111 11111123333333343 455422
Q ss_pred CccccchhhH----Hhh-cc---cEEEEecCCcceecc-cCC
Q 023776 173 GAVQSSANLA----LLR-HG---ISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 173 g~v~~~~~~~----~L~-~~---~vV~L~~~~e~l~~R-~~R 205 (277)
......+. .++ .+ .+|||++|.+++.+| ..|
T Consensus 79 --~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 79 --NLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp ----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred --cCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 12223332 222 33 689999999999999 444
No 88
>PRK14529 adenylate kinase; Provisional
Probab=99.09 E-value=6.1e-10 Score=98.86 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=65.3
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHHHhhhc---CcE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSM---GRL 166 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~~---~~~ 166 (277)
.|+|.|+|||||||+|+.|++.+++.++++.+++++... + ..+.++. ..|....-++-..++.+-... ...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g~ 80 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNGW 80 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCcE
Confidence 589999999999999999999999999998888876543 1 2223333 234433333333333322211 123
Q ss_pred EEEecCCccccchhhH----Hh-----hcccEEEEecCCcceecc
Q 023776 167 VVCAGNGAVQSSANLA----LL-----RHGISLWIDVPPGMVARM 202 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~----~L-----~~~~vV~L~~~~e~l~~R 202 (277)
|+. |++-.....+ .+ ..+.+|+|++|.+++.+|
T Consensus 81 iLD---GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~R 122 (223)
T PRK14529 81 LLD---GFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNR 122 (223)
T ss_pred EEe---CCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 332 4443322222 12 146899999999999999
No 89
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.09 E-value=1.5e-10 Score=99.08 Aligned_cols=107 Identities=15% Similarity=0.150 Sum_probs=64.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhh---cCc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSS---MGR 165 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~---~~~ 165 (277)
.|+|+|+|||||||+|+.||+.+|+.+++.|+++++.... ..+.+++.. |.....+....++. .+.. ...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence 4899999999999999999999999999999988775431 112222221 22111122122222 2221 123
Q ss_pred EEEEecCCccccchhhHHh--------hcccEEEEecCCcceecc-cCC
Q 023776 166 LVVCAGNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L--------~~~~vV~L~~~~e~l~~R-~~R 205 (277)
.|+. |++........+ ..+++|||++|.+++.+| ..|
T Consensus 80 ~vld---g~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R 125 (194)
T cd01428 80 FILD---GFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGR 125 (194)
T ss_pred EEEe---CCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 4443 333322222222 245799999999999999 444
No 90
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.08 E-value=4.2e-11 Score=112.31 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=70.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhh------hccCcchh-----hhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYY------YFDSDSLV-----FEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSM 163 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~------~iD~D~li-----~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~ 163 (277)
.++|+|+|||||||+++.|++.|+.. ++|.|+++ +...| .+++++|+ .||. ++.+++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-~~~~~~~k-----~~R~----~i~~~le- 69 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-REIPSQWK-----QFRQ----ELLKYLE- 69 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-CCcHHHHH-----HHHH----HHHHHHH-
Confidence 36899999999999999999888643 89999998 44444 67777774 3442 2333332
Q ss_pred CcEEEEecCCccccc------h----hhHHhh-cccEEEEecCCcceecc
Q 023776 164 GRLVVCAGNGAVQSS------A----NLALLR-HGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 ~~~VIa~g~g~v~~~------~----~~~~L~-~~~vV~L~~~~e~l~~R 202 (277)
+.|+++|+|+.+.+ . ++..|+ +|++|||+++.+....|
T Consensus 70 -~~v~a~~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~r 118 (340)
T TIGR03575 70 -HFLVAVINGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHS 118 (340)
T ss_pred -HHHHHhcCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHH
Confidence 34667788887754 2 346665 78999999999988877
No 91
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.06 E-value=1e-09 Score=93.57 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=22.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.|+|.|++||||||+++.|++.|
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988
No 92
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.05 E-value=7.7e-11 Score=119.76 Aligned_cols=139 Identities=14% Similarity=0.198 Sum_probs=94.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHH-HHhhhhhhhhhhHHHHHHHHHhhh-cCcEEEE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESDEKGYQQAETEVLKQLSS-MGRLVVC 169 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~-~i~~~~g~~~fr~~e~~vl~~l~~-~~~~VIa 169 (277)
....|+++|+||+||||+|+.|++.|+|.++|+|.+....++ +.+. ..+...++..|+..|.+++..++. ..+.++.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~r-r~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~ 292 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYR-RRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICK 292 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhH-hhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999999999999988776665 3333 345555677788877777666654 3345677
Q ss_pred ecCCccccchhhHHhh----------cc-----cEEEEecCCcceecc----cCCCC---C------hhHHHHHHHHHhh
Q 023776 170 AGNGAVQSSANLALLR----------HG-----ISLWIDVPPGMVARM----DHSGF---P------ESELFALYKEMRD 221 (277)
Q Consensus 170 ~g~g~v~~~~~~~~L~----------~~-----~vV~L~~~~e~l~~R----~~R~l---~------~~~l~~~~~~r~~ 221 (277)
+|+++|++..|+..++ .+ .+|||++ .....+| ..|+. + .+.+.++++++.+
T Consensus 293 ~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~-vc~~~~~i~~ni~r~~~~~~~~~e~~~~~~~~~~~~~~~ 371 (664)
T PTZ00322 293 TDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV-VNNNSETIRRNVLRAKEMFPGAPEDFVDRYYEVIEQLEA 371 (664)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE-eCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 7777777776543222 22 4788877 4443333 22321 1 1456677888889
Q ss_pred cccccceeeeH
Q 023776 222 GYATADVTVSL 232 (277)
Q Consensus 222 ~y~~Ad~vId~ 232 (277)
.|+.++..+|.
T Consensus 372 ~Ye~~~~~~d~ 382 (664)
T PTZ00322 372 VYKSLNPVTDC 382 (664)
T ss_pred hcccCCccccC
Confidence 99876655543
No 93
>PRK08118 topology modulation protein; Reviewed
Probab=99.04 E-value=3.2e-10 Score=96.21 Aligned_cols=92 Identities=17% Similarity=0.301 Sum_probs=60.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|+|||||||+|+.|++.+|+++++.|.++... |+... ..+. ...+++++......|+. |..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-~w~~~-------~~~~----~~~~~~~~~~~~~wVid-G~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-NWEGV-------PKEE----QITVQNELVKEDEWIID-GNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-CCcCC-------CHHH----HHHHHHHHhcCCCEEEe-CCc
Confidence 57999999999999999999999999999999987542 11100 0111 12234455444455553 321
Q ss_pred ccccchhhH-Hhh-cccEEEEecCCcceecc
Q 023776 174 AVQSSANLA-LLR-HGISLWIDVPPGMVARM 202 (277)
Q Consensus 174 ~v~~~~~~~-~L~-~~~vV~L~~~~e~l~~R 202 (277)
...++ .+. .+.+|||++|.+++..|
T Consensus 69 ----~~~~~~~l~~~d~vi~Ld~p~~~~~~R 95 (167)
T PRK08118 69 ----GGTMDIRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred ----chHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 11111 233 78999999999988877
No 94
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.03 E-value=8.8e-10 Score=94.14 Aligned_cols=154 Identities=14% Similarity=0.212 Sum_probs=95.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC------hhHHHHhhhhhhhhhhHHHHHHHHHhh-hcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG------ESAAKAFRESDEKGYQQAETEVLKQLS-SMG 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~------~~i~~i~~~~g~~~fr~~e~~vl~~l~-~~~ 164 (277)
.+++||+.|+|||||-|++..+++.+||.++++++++++...- .-+.++.+ .|...-.++-..+|.+-. +..
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~-~G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIK-NGDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHH-cCCcCcHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999998776541 12223332 243333333333333221 111
Q ss_pred --c-EEEEecCCccccchhhHHhh------cccEEEEecCCcceecc-cCCC----CC---hhHHHHHHH----HHhh--
Q 023776 165 --R-LVVCAGNGAVQSSANLALLR------HGISLWIDVPPGMVARM-DHSG----FP---ESELFALYK----EMRD-- 221 (277)
Q Consensus 165 --~-~VIa~g~g~v~~~~~~~~L~------~~~vV~L~~~~e~l~~R-~~R~----l~---~~~l~~~~~----~r~~-- 221 (277)
. .+| .|++-..+++..+. ..+++|++|+.|++.+| ..|+ .. .+.+..+++ ...|
T Consensus 86 ~~~~fLI---DGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~DDn~esikkR~et~~~~t~Pvi 162 (195)
T KOG3079|consen 86 DSNGFLI---DGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRSDDNEESIKKRLETYNKSTLPVI 162 (195)
T ss_pred CCCeEEe---cCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHcchHHH
Confidence 2 333 35565555554442 36899999999999999 4442 22 233333332 2233
Q ss_pred -cccccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 222 -GYATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 222 -~y~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+|+..+ ..|+. +.+|+++..++...|..
T Consensus 163 ~~~e~kg~l~~i~a-------------~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 163 EYYEKKGKLLKINA-------------ERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHccCcEEEecC-------------CCCHHHHHHHHHHHhhc
Confidence 334333 35553 68899999988877753
No 95
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.2e-09 Score=95.24 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=72.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh---hhhccCcc-hhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDS-LVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg---~~~iD~D~-li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
+.|+++|+|||||||.|+.||+.|. +..++... ...-...+.+.+ +..+.-.+.|.+.....+...+. ...||+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslp-i~ke~yres~~ks~~rlldSalk-n~~VIv 79 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLP-ILKEVYRESFLKSVERLLDSALK-NYLVIV 79 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccc-hHHHHHHHHHHHHHHHHHHHHhc-ceEEEE
Confidence 6799999999999999999999885 33333222 110001001111 11111112222211111222111 235665
Q ss_pred ecCCccccchhhHH----hh---cccEEEEecCCcceecc-cCC--CCChhHHHHHHHHHhhcc---c--ccceeeeH
Q 023776 170 AGNGAVQSSANLAL----LR---HGISLWIDVPPGMVARM-DHS--GFPESELFALYKEMRDGY---A--TADVTVSL 232 (277)
Q Consensus 170 ~g~g~v~~~~~~~~----L~---~~~vV~L~~~~e~l~~R-~~R--~l~~~~l~~~~~~r~~~y---~--~Ad~vId~ 232 (277)
..-+..- .=.+++ .. ..-+||+.||+|++.+| ..| |++++.++++++...++- . .+-++|+.
T Consensus 80 DdtNYyk-smRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~RfEePn~~~rWDspll~id~ 156 (261)
T COG4088 80 DDTNYYK-SMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRFEEPNPDRRWDSPLLVIDD 156 (261)
T ss_pred ecccHHH-HHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhhcCCCCCccccCceEEEec
Confidence 4322211 000111 11 23589999999999999 445 678888998887665432 2 25578874
No 96
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=99.02 E-value=3.5e-10 Score=93.94 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=92.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++-.||+||.+||||||+|..|.+.|- .+.+|.|.+..-+..+ +. +-++++.+..|++- + +.+|... .+
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~D--L~-F~a~dR~ENIRRig-e-VaKLFAD-ag 103 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKD--LG-FKAEDRNENIRRIG-E-VAKLFAD-AG 103 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccc--cC-cchhhhhhhHHHHH-H-HHHHHhc-cc
Confidence 578999999999999999999998774 2357999987554331 11 12233445555432 2 2333332 23
Q ss_pred EEEecCCc-cc--cc-hhhHHhhc--ccEEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc---ccceeeeHH
Q 023776 167 VVCAGNGA-VQ--SS-ANLALLRH--GISLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA---TADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~-v~--~~-~~~~~L~~--~~vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~---~Ad~vId~~ 233 (277)
||+-..-+ +. +. ..+++++. .+.||+++|++++.+|+..++. ...+...-.. ..+|+ ++.+++..+
T Consensus 104 ~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGI-ddPYEaP~~cEi~l~~~ 182 (207)
T KOG0635|consen 104 VICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGI-DDPYEAPLNCEIVLKSH 182 (207)
T ss_pred eeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccC-CCcccCCCCcEEEEccC
Confidence 44321111 11 11 13444542 3569999999999999776652 1334443222 34565 356777653
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
..-+|+++++.|...+.+.
T Consensus 183 -----------~~~sp~~mae~iv~YL~~k 201 (207)
T KOG0635|consen 183 -----------ESSSPEEMAEIIVSYLDNK 201 (207)
T ss_pred -----------CCCCHHHHHHHHHHHHhhc
Confidence 4456778999888887643
No 97
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.01 E-value=3e-09 Score=91.72 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=25.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+++.|+|.|++||||||+++.|++.|+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999998753
No 98
>PLN02842 nucleotide kinase
Probab=99.00 E-value=1.5e-09 Score=106.27 Aligned_cols=157 Identities=15% Similarity=0.136 Sum_probs=91.3
Q ss_pred EeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhh----cCcEE
Q 023776 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLK-QLSS----MGRLV 167 (277)
Q Consensus 98 L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~----~~~~V 167 (277)
|+|+|||||||+|+.|++.+|+.+++++++++.... + ..+.+++. .|...-.+.-..++. .+.+ ....|
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~I 80 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGWL 80 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence 789999999999999999999999999988765421 1 22333332 232111111111121 2211 12244
Q ss_pred EEecCCccccchhhHHhh-----cccEEEEecCCcceecc-cCCCC------------------------------ChhH
Q 023776 168 VCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGF------------------------------PESE 211 (277)
Q Consensus 168 Ia~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~R~l------------------------------~~~~ 211 (277)
+ . |++........|. .+++|+|++|.+++.+| .+|.. .++.
T Consensus 81 L-D--GfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~R~DD~eE~ 157 (505)
T PLN02842 81 L-D--GYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLITRPDDTEEK 157 (505)
T ss_pred E-e--CCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccCCccccccCCCCccccccccccCCCCCHHH
Confidence 4 2 3333322222332 57899999999999888 43310 0123
Q ss_pred HHHHHHHH----hhccc-ccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHHHHHH
Q 023776 212 LFALYKEM----RDGYA-TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMME 271 (277)
Q Consensus 212 l~~~~~~r----~~~y~-~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~~~~~ 271 (277)
+...++.. .|... ..+ ..||. +.+++++.++|...|.+.+..|++|-
T Consensus 158 IkkRL~~Y~~~t~pIl~~Y~~rl~~IDA-------------sqs~EeVfeeI~~iL~~~L~~~~~~~ 211 (505)
T PLN02842 158 VKARLQIYKKNAEAILSTYSDIMVKIDG-------------NRPKEVVFEEISSLLSQIQKDATKMI 211 (505)
T ss_pred HHHHHHHHHHHhhhHHHhcCcEEEEEEC-------------CCCHHHHHHHHHHHHHHHHhhhhhhc
Confidence 44332221 12111 122 34553 57899999999999999988777664
No 99
>PRK13973 thymidylate kinase; Provisional
Probab=98.99 E-value=1.3e-09 Score=95.77 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh---hhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~i 122 (277)
+|..|+|.|++||||||+++.|++.| |+.++
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~ 35 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVL 35 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 47899999999999999999999999 66654
No 100
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.99 E-value=4.7e-10 Score=101.26 Aligned_cols=173 Identities=18% Similarity=0.252 Sum_probs=101.7
Q ss_pred ccCCchhhhhh-cccccccccceeEEEeeccchHHhhhhHHHHhhhhhhh---ccCcchhhhhcCChhH-----------
Q 023776 73 AEDPSFAVKKK-AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYY---FDSDSLVFEAAGGESA----------- 137 (277)
Q Consensus 73 ~~d~~~~l~~~-~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~---iD~D~li~~~~g~~~i----------- 137 (277)
-+.|...++-| .+.++. +.+.|++.|+.|||||++||.||+.||+.+ ++.|.+....+|+ ..
T Consensus 52 y~~~~~~l~Dktskrf~e--nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~-D~r~l~~~~p~~c 128 (393)
T KOG3877|consen 52 YFNYIDGLKDKTSKRFHE--NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGN-DLRNLYNKFPARC 128 (393)
T ss_pred ccchhhhhcchhhhhhcc--cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCc-cchhccccCCccc
Confidence 55666678766 444443 678999999999999999999999999876 4677776555552 11
Q ss_pred -----HHHhhhh-hhhhhhHHHH--------HHHHHhhhcCcEEEEecCCccccch---------h--------------
Q 023776 138 -----AKAFRES-DEKGYQQAET--------EVLKQLSSMGRLVVCAGNGAVQSSA---------N-------------- 180 (277)
Q Consensus 138 -----~~i~~~~-g~~~fr~~e~--------~vl~~l~~~~~~VIa~g~g~v~~~~---------~-------------- 180 (277)
..++... ++...+ +.. +.+..| ..|+.+|.|+|+... .
T Consensus 129 r~~di~~Fy~dPS~dlsa~-~Q~r~y~~R~~QY~dAL----~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~h 203 (393)
T KOG3877|consen 129 RLPDISMFYKDPSGDLSAA-MQDRIYNCRFDQYLDAL----AHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKH 203 (393)
T ss_pred CchhHHHhccCCCccHHHH-HHHHHHHhHHHHHHHHH----HHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHH
Confidence 1111110 111110 110 111111 134555555554321 0
Q ss_pred ---------hHHhhcccEEEEecCCcceecc-cCCCC-------ChhHHHHHHHHHhhcccccceeeeHHHHHhHhCCCc
Q 023776 181 ---------LALLRHGISLWIDVPPGMVARM-DHSGF-------PESELFALYKEMRDGYATADVTVSLQKVASQLGYDD 243 (277)
Q Consensus 181 ---------~~~L~~~~vV~L~~~~e~l~~R-~~R~l-------~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~d 243 (277)
.++|.+.+||||+.|.+.+.++ .+|+- ++..+..+.+ .|+. .+.=+.+++++.|.|++
T Consensus 204 Ynevr~nti~~ll~PHLViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~----~YK~-~fL~e~s~h~eiL~Ydw 278 (393)
T KOG3877|consen 204 YNEVRKNTIPQLLWPHLVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEE----SYKD-SFLREYSNHSEILAYDW 278 (393)
T ss_pred HHHHHhhhhhhhcCccEEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHH----HHHH-HHHHHHhhhhheeeeec
Confidence 0123356899999999999998 66653 3333333322 2221 11112345677788999
Q ss_pred ccccccchhhHHHHH
Q 023776 244 LDAVTTEDMTLEVLK 258 (277)
Q Consensus 244 ts~~t~eeva~~Il~ 258 (277)
|.....+.|++.|..
T Consensus 279 t~~gdt~~VVEDIEr 293 (393)
T KOG3877|consen 279 TKPGDTDAVVEDIER 293 (393)
T ss_pred ccCCCchhHHHhhhh
Confidence 999998988888864
No 101
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.97 E-value=9.3e-10 Score=98.10 Aligned_cols=107 Identities=9% Similarity=0.117 Sum_probs=64.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-----hhHHHHhhhhhh----hhhhHHHHHHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDE----KGYQQAETEVLKQLSS 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-----~~i~~i~~~~g~----~~fr~~e~~vl~~l~~ 162 (277)
.++.|+|+|+|||||||+|+.||+.+|+.++++|+++++.... ..+.++... |. +....+-.+.+.++..
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~~ 83 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVTD 83 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhcc
Confidence 3467999999999999999999999999999999999875431 122222222 32 1111211222222211
Q ss_pred -c-CcEEEEecCCccccchhhHHh----hcccEEEEecCCcceecc
Q 023776 163 -M-GRLVVCAGNGAVQSSANLALL----RHGISLWIDVPPGMVARM 202 (277)
Q Consensus 163 -~-~~~VIa~g~g~v~~~~~~~~L----~~~~vV~L~~~~e~l~~R 202 (277)
. ...|+ . |++-.......+ +.+.+|+|++|.+++.+|
T Consensus 84 ~~~~g~iL-D--GfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~R 126 (229)
T PTZ00088 84 DCFKGFIL-D--GFPRNLKQCKELGKITNIDLFVNIYLPRNILIKK 126 (229)
T ss_pred ccCceEEE-e--cCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 1 12333 2 233222222222 256899999999999988
No 102
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.97 E-value=4.1e-10 Score=96.31 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=77.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhh--hccCcchhhhhcCChhH-HHHhh--hh---hhhhhhHHH---HHHHHHhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESA-AKAFR--ES---DEKGYQQAE---TEVLKQLS 161 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~--~iD~D~li~~~~g~~~i-~~i~~--~~---g~~~fr~~e---~~vl~~l~ 161 (277)
+.+|+|.|+|.|||||+|+.|.+.+.-+ ++..|.++..+..+... ..-+. .. +...+.... ...++..+
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988755 46678877643211000 00000 00 012222222 22334444
Q ss_pred hcCcEEEEecCCccccch----hh-HHhh--cccEEEEecCCcceecc-cCCC-CChhHHHHHHHHHhhccc--ccceee
Q 023776 162 SMGRLVVCAGNGAVQSSA----NL-ALLR--HGISLWIDVPPGMVARM-DHSG-FPESELFALYKEMRDGYA--TADVTV 230 (277)
Q Consensus 162 ~~~~~VIa~g~g~v~~~~----~~-~~L~--~~~vV~L~~~~e~l~~R-~~R~-l~~~~l~~~~~~r~~~y~--~Ad~vI 230 (277)
..+..||.. +++..+. .+ +.|. .-+.|-+.||+|++.+| ..|+ .....-..+++ ..++ ..|+.|
T Consensus 81 ~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G~a~~q~~---~Vh~~~~YDleV 155 (174)
T PF07931_consen 81 RAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIGLAAWQAE---HVHEGGRYDLEV 155 (174)
T ss_dssp HTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTTHHHHHTT---GGGTT---SEEE
T ss_pred hCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchHHHHHHHh---hcccCCCCCEEE
Confidence 556555543 2223222 22 3443 23678999999999999 3332 11121111111 1222 368888
Q ss_pred eHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 231 SLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 231 d~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|| |..+|++.+++|++.++
T Consensus 156 DT------------s~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 156 DT------------SATSPEECAREILARLE 174 (174)
T ss_dssp ET------------TSS-HHHHHHHHHTT--
T ss_pred EC------------CCCCHHHHHHHHHHHhC
Confidence 77 68999999999987653
No 103
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.95 E-value=5.4e-09 Score=91.16 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=31.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---hhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~~~iD~D~li~ 129 (277)
++..|+|+|++||||||+++.|++.++ +.+++.|.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 568999999999999999999999883 45677777654
No 104
>PRK09183 transposase/IS protein; Provisional
Probab=98.94 E-value=4.5e-11 Score=108.35 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=75.9
Q ss_pred CCCCcccCCCccccccccccccccceeeeeeecCCceeeeccCCCCCccceeeeeccCCch--hhhhh-ccccccc---c
Q 023776 18 TPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---L 91 (277)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~l~~~-~~~~~~~---~ 91 (277)
...+++|.++|..|++. |...|+.|++.++++.+++|. .+++++||+++ .+++. ..+|..+ .
T Consensus 33 ~~~~~~~~e~l~~ll~~-----------E~~~R~~~~~~~~~k~a~~p~-~~~l~~fd~~~~~~~~~~~i~~L~~~~~i~ 100 (259)
T PRK09183 33 VDQEWSYMDFLEHLLHE-----------EKLARHQRKQAMYTRMAAFPA-VKTFEEYDFTFATGAPQKQLQSLRSLSFIE 100 (259)
T ss_pred hhcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCCCCC-CCcHhhcccccCCCCCHHHHHHHhcCCchh
Confidence 45679999999999999 999999999999999999998 69999999998 55554 6666655 4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
.+.+++|+|++|+|||+++..++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999999999754
No 105
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.94 E-value=5.6e-10 Score=88.42 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=31.8
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li 128 (277)
+|+|+|+|||||||+|+.|++.+|+.+++.|+++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5899999999999999999999999999999953
No 106
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.93 E-value=5e-09 Score=90.50 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=29.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhh---hhhhccCcchhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE 130 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~li~~ 130 (277)
.|+|+|++||||||+++.|+..+ +..+++.|.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 48999999999999999999977 3567777776643
No 107
>PRK06526 transposase; Provisional
Probab=98.90 E-value=7.9e-11 Score=106.50 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=75.3
Q ss_pred CCCcccCCCccccccccccccccceeeeeeecCCceeeeccCCCCCccceeeeeccCCch--hhhhh-ccccccc---cc
Q 023776 19 PKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---LK 92 (277)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~l~~~-~~~~~~~---~~ 92 (277)
..+++|.++|..|++. |...|+.+++.+++++++++. .+++++||+++ .+++. ..++..+ -.
T Consensus 30 ~~~~~~~e~l~~ll~~-----------E~~~R~~~~~~~~lk~a~~p~-~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~ 97 (254)
T PRK06526 30 AESWSHEEFLAACLQR-----------EVAARESHGGEGRIRAARFPA-RKSLEEFDFDHQRSLKRDTIAHLGTLDFVTG 97 (254)
T ss_pred hcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhCCCCC-CCChhhccCccCCCcchHHHHHHhcCchhhc
Confidence 4679999999999999 999999999999999999997 68999999998 55554 5666555 35
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.+++|+|++|+|||+++..|+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 7899999999999999999997644
No 108
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.90 E-value=2.2e-09 Score=97.91 Aligned_cols=138 Identities=20% Similarity=0.256 Sum_probs=81.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
..|+|+|++||||||..+.|.+ +||.++|. +.-.+.. ..-+.+...+. -..++ ..+|+..++
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED-~Gy~cvDN--lP~~Ll~--~l~~~~~~~~~---------~~~~~----Ai~iD~R~~ 63 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALED-LGYYCVDN--LPPSLLP--QLIELLAQSNS---------KIEKV----AIVIDIRSR 63 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHh-cCeeEEcC--CcHHHHH--HHHHHHHhcCC---------CCceE----EEEEeCCCh
Confidence 5789999999999999999955 89988884 4332221 00011110000 00111 133333222
Q ss_pred cccc--chhhHHhh-cc---cEEEEecCCcceecc--c-CC--CCCh--hHHHHHHHHHh---hcccccceeeeHHHHHh
Q 023776 174 AVQS--SANLALLR-HG---ISLWIDVPPGMVARM--D-HS--GFPE--SELFALYKEMR---DGYATADVTVSLQKVAS 237 (277)
Q Consensus 174 ~v~~--~~~~~~L~-~~---~vV~L~~~~e~l~~R--~-~R--~l~~--~~l~~~~~~r~---~~y~~Ad~vId~~~~a~ 237 (277)
.... ......++ .+ .+|||+|+.+++.+| . +| |+.. ..++.+-.||. |.-+.||++|||
T Consensus 64 ~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDT----- 138 (284)
T PF03668_consen 64 EFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDT----- 138 (284)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEEC-----
Confidence 1110 11122222 22 589999999999999 3 44 5532 23455555553 333469999987
Q ss_pred HhCCCcccccccchhhHHHHHHHH
Q 023776 238 QLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 238 ~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|++++.+....|.+.+.
T Consensus 139 -------s~l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 139 -------SNLSVHQLRERIRERFG 155 (284)
T ss_pred -------CCCCHHHHHHHHHHHhc
Confidence 69999999988888765
No 109
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.89 E-value=9.6e-09 Score=89.74 Aligned_cols=41 Identities=20% Similarity=0.228 Sum_probs=33.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh----ccCcchhhhhcC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY----FDSDSLVFEAAG 133 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~----iD~D~li~~~~g 133 (277)
.+.|+|.||.|+||||+|+.||++||... ++-|.+++.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~ 48 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYE 48 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHH
Confidence 47899999999999999999999999654 455566655554
No 110
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.87 E-value=8.5e-09 Score=88.53 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=35.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA 132 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~ 132 (277)
+.|+|.|+|||||||+|+.|++.++++++|+|++.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 468999999999999999999999999999988876643
No 111
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.87 E-value=8.6e-09 Score=106.94 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=36.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~ 131 (277)
.+..|.|.|++||||||+|+.||+.||+.|+|++.+++..
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 3468999999999999999999999999999999887654
No 112
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.85 E-value=8.1e-09 Score=88.63 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+++.|+|.|++||||||+++.|++.|+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999864
No 113
>PLN02924 thymidylate kinase
Probab=98.85 E-value=4.3e-08 Score=86.89 Aligned_cols=167 Identities=12% Similarity=0.120 Sum_probs=86.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh-----cCChhHHHHhhhhh---h----hhhhH--HHH-H
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-----AGGESAAKAFRESD---E----KGYQQ--AET-E 155 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~-----~g~~~i~~i~~~~g---~----~~fr~--~e~-~ 155 (277)
-++..|+|.|++||||||+++.|++.|+...+..... .+. .| ..+.+++.... . -.|.. .+. .
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~-~ep~~~~~~g-~~ir~~l~~~~~~~~~~~~llf~adR~~~~~ 91 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW-RFPDRTTSVG-QMISAYLSNKSQLDDRAIHLLFSANRWEKRS 91 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee-eCCCCCChHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999998664443211 111 11 12222222100 0 00110 010 1
Q ss_pred HHHHhhhcCcEEEEecCC---ccc------cchhhHH----h-hcccEEEEecCCcceecc-cCCC--C-ChhHHHHHHH
Q 023776 156 VLKQLSSMGRLVVCAGNG---AVQ------SSANLAL----L-RHGISLWIDVPPGMVARM-DHSG--F-PESELFALYK 217 (277)
Q Consensus 156 vl~~l~~~~~~VIa~g~g---~v~------~~~~~~~----L-~~~~vV~L~~~~e~l~~R-~~R~--l-~~~~l~~~~~ 217 (277)
.+......+..||+...- .+. ..+.... + .++++|||++|+++..+| ..++ . ..+.+..+.+
T Consensus 92 ~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~~~~~~rv~~ 171 (220)
T PLN02924 92 LMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEKLEFQKKVAK 171 (220)
T ss_pred HHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccccHHHHHHHHH
Confidence 122223456677775421 000 0011111 1 268999999999999998 3221 1 1111122111
Q ss_pred HHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHHHHHHHhcCC
Q 023776 218 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMMEEAARP 276 (277)
Q Consensus 218 ~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~~~~~~~~~~ 276 (277)
.........-.+||. +.+++++..+|.+.|..... .=++++|
T Consensus 172 ~Y~~la~~~~~vIDa-------------~~sieeV~~~I~~~I~~~l~----~~~~~~~ 213 (220)
T PLN02924 172 RFQTLRDSSWKIIDA-------------SQSIEEVEKKIREVVLDTVQ----RCLAGKP 213 (220)
T ss_pred HHHHHhhcCEEEECC-------------CCCHHHHHHHHHHHHHHHHH----hccccCc
Confidence 111111111245564 58999999999999987655 1256665
No 114
>PRK07261 topology modulation protein; Provisional
Probab=98.79 E-value=6.2e-09 Score=88.53 Aligned_cols=94 Identities=12% Similarity=0.139 Sum_probs=58.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|++||||||+|+.|++.+|+++++.|.+.... + .. +...+.+.. .+.++...+..|+ .|.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~-~------~~-~~~~~~~~~----~~~~~~~~~~wIi-dg~- 66 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP-N------WQ-ERDDDDMIA----DISNFLLKHDWII-DGN- 66 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc-c------cc-cCCHHHHHH----HHHHHHhCCCEEE-cCc-
Confidence 36999999999999999999999999999999876431 1 01 111111211 1233333444444 332
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM 202 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R 202 (277)
.........+. .+.+|||++|.+.+..|
T Consensus 67 -~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R 95 (171)
T PRK07261 67 -YSWCLYEERMQEADQIIFLNFSRFNCLYR 95 (171)
T ss_pred -chhhhHHHHHHHCCEEEEEcCCHHHHHHH
Confidence 11111112233 68999999999988877
No 115
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.75 E-value=8.3e-09 Score=89.16 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=23.2
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+|.|.|++||||||+|+.|+..|+-
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5899999999999999999999973
No 116
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.75 E-value=1.5e-08 Score=87.55 Aligned_cols=150 Identities=12% Similarity=0.132 Sum_probs=78.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh-hcC---ChhH----HHHhhh---------hh---hhhhhH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE-AAG---GESA----AKAFRE---------SD---EKGYQQ 151 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~-~~g---~~~i----~~i~~~---------~g---~~~fr~ 151 (277)
++..|+|+||+|||||||++.|.+.+.-.++....-=+. .-| |... .+-|.. ++ ...|--
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 578999999999999999999988653222211100000 000 0000 000110 00 011110
Q ss_pred HHHHHHHHhhhcCcEEEEecCCccccchhhHHhh---cc--cEEEEecC-Ccceecc-cCCC-CChhHHHHHHHHHhhc-
Q 023776 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HG--ISLWIDVP-PGMVARM-DHSG-FPESELFALYKEMRDG- 222 (277)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~---~~--~vV~L~~~-~e~l~~R-~~R~-l~~~~l~~~~~~r~~~- 222 (277)
-.+.+++....+..+|.. ++......++ .+ ++|||.+| .+.+.+| ..|+ .+++.+..+++...+-
T Consensus 83 -~~~~i~~~~~~g~~~i~d-----~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~ 156 (186)
T PRK14737 83 -PKAFIEDAFKEGRSAIMD-----IDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIEL 156 (186)
T ss_pred -cHHHHHHHHHcCCeEEEE-----cCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 112233434444444332 2233333343 22 68999985 5788888 6665 4667777766554321
Q ss_pred -c-cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 223 -Y-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 223 -y-~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
+ ..+|++|+| + +.+++..++.+.|.
T Consensus 157 ~~~~~~D~vI~N-------------~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 157 DEANEFDYKIIN-------------D-DLEDAIADLEAIIC 183 (186)
T ss_pred hhhccCCEEEEC-------------c-CHHHHHHHHHHHHh
Confidence 2 248999987 2 67777777666554
No 117
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.74 E-value=2.5e-08 Score=88.49 Aligned_cols=138 Identities=21% Similarity=0.265 Sum_probs=79.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh-----h-ccCcchhhh-----hcCChhHHHHhhhhhhhhhhHHHHHHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----Y-FDSDSLVFE-----AAGGESAAKAFRESDEKGYQQAETEVLKQL 160 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~-----~-iD~D~li~~-----~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l 160 (277)
++.+|+|.|++||||||+++.|+..+... . +..|.+... ..|...-......+....+. +++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~----~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLA----ALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHH----HHHHHH
Confidence 57899999999999999999999877532 1 444443211 11100000000000000010 111111
Q ss_pred h--------------------------hcCcEEEEecCCccccchhhHHhh--cccEEEEecCCcceecc-cC----CCC
Q 023776 161 S--------------------------SMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DH----SGF 207 (277)
Q Consensus 161 ~--------------------------~~~~~VIa~g~g~v~~~~~~~~L~--~~~vV~L~~~~e~l~~R-~~----R~l 207 (277)
. .....||..|.+.......|..+. .+.+|||++|.+++.+| .. +++
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~~~~g~ 187 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARKLAGGL 187 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhcCC
Confidence 0 023456667766555555666554 67999999999999998 33 467
Q ss_pred ChhHHHHHHHHH-hhcc-------cccceeeeHH
Q 023776 208 PESELFALYKEM-RDGY-------ATADVTVSLQ 233 (277)
Q Consensus 208 ~~~~l~~~~~~r-~~~y-------~~Ad~vId~~ 233 (277)
+++++.+++..+ .+.+ ..||++|+++
T Consensus 188 s~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~n~ 221 (229)
T PRK09270 188 SPEAAEAFVLRNDGPNARLVLETSRPADLVLEMT 221 (229)
T ss_pred CHHHHHHHHHhcChHHHHHHHhcCCCCCEEEEec
Confidence 777777777643 2321 2499999873
No 118
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.73 E-value=1e-08 Score=84.94 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=58.0
Q ss_pred EeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-----hhHHHHhhhhhhhhhhHHHHHHHH-Hhhhc---CcEEE
Q 023776 98 LVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-----ESAAKAFRESDEKGYQQAETEVLK-QLSSM---GRLVV 168 (277)
Q Consensus 98 L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-----~~i~~i~~~~g~~~fr~~e~~vl~-~l~~~---~~~VI 168 (277)
|.|+|||||||+|+.||+.+|+.+++.++++++.... ..+.+... .|...-.++-..++. ++... ...|+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~-~g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLD-NGELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHH-TTSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHH-hhccchHHHHHHHHHHHHhhhcccceeee
Confidence 6899999999999999999999999999988765421 11222222 233222222222222 22211 22344
Q ss_pred EecCCccccchhhHHh---------hcccEEEEecCCcceecc
Q 023776 169 CAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM 202 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L---------~~~~vV~L~~~~e~l~~R 202 (277)
. |++.+......+ ..+.+|+|++|.+.+.+|
T Consensus 80 d---GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R 119 (151)
T PF00406_consen 80 D---GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIER 119 (151)
T ss_dssp E---SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHH
T ss_pred e---eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhh
Confidence 2 444433222211 145899999999999999
No 119
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.72 E-value=1.3e-08 Score=91.18 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=83.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhh-hcC--cEEEEe
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMG--RLVVCA 170 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~-~~~--~~VIa~ 170 (277)
..|+|+|++|||||+..+.|.+ +||.++|. +..++ +.+ |.++ +.... ... ..++..
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lED-lGyycvDN--LPp~L---------lp~-----~~~~----~~~~~~~~~kvAv~iDi 60 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLED-LGYYCVDN--LPPQL---------LPK-----LADL----MLTLESRITKVAVVIDV 60 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHHh-cCeeeecC--CCHHH---------HHH-----HHHH----HhhcccCCceEEEEEec
Confidence 4789999999999999999955 89888774 43322 221 1110 00000 011 133333
Q ss_pred cCCcccc--chhhHHhh-c----ccEEEEecCCcceecc--c-CC--CCChh--HHHHHHHHHh---hcccccceeeeHH
Q 023776 171 GNGAVQS--SANLALLR-H----GISLWIDVPPGMVARM--D-HS--GFPES--ELFALYKEMR---DGYATADVTVSLQ 233 (277)
Q Consensus 171 g~g~v~~--~~~~~~L~-~----~~vV~L~~~~e~l~~R--~-~R--~l~~~--~l~~~~~~r~---~~y~~Ad~vId~~ 233 (277)
.+..... .+....++ . -.++||+++.+++.+| + +| |+... -++.+-.+|. |..+.||++|||
T Consensus 61 Rs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDT- 139 (286)
T COG1660 61 RSREFFGDLEEVLDELKDNGDIDPRVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDT- 139 (286)
T ss_pred ccchhHHHHHHHHHHHHhcCCCCceEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeec-
Confidence 3321110 12233444 3 2489999999999999 3 34 56432 3445555553 444569999987
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
|++++.+..+.|...+..
T Consensus 140 -----------s~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 140 -----------SELSVHELRERIRTRFLG 157 (286)
T ss_pred -----------ccCCHHHHHHHHHHHHcc
Confidence 699999999999888764
No 120
>PRK08181 transposase; Validated
Probab=98.70 E-value=6.2e-10 Score=101.47 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=80.4
Q ss_pred CCCCcccCCCccccccccccccccceeeeeeecCCceeeeccCCCCCccceeeeeccCCch--hhhhh-ccccccc----
Q 023776 18 TPKGLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---- 90 (277)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~l~~~-~~~~~~~---- 90 (277)
...+++|.++|..|++. |...|+.+++.+++++++++. .+++++||++. .+.+. ...++.+
T Consensus 36 ~~~~~~~~e~L~~ll~~-----------E~~~R~~~~~~r~lk~A~~p~-~~tle~fd~~~~~~~~~~~~~~L~~~~~~~ 103 (269)
T PRK08181 36 DKEGWPAARFLAAIAEH-----------ELAERARRRIERHLAEAHLPP-GKTLDSFDFEAVPMVSKAQVMAIAAGDSWL 103 (269)
T ss_pred hhcCCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCCCCC-CCCHhhCCccCCCCCCHHHHHHHHHHHHHH
Confidence 35679999999999999 999999999999999999987 68999999987 44444 5555433
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh---h--hhhccCcchhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFE 130 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L---g--~~~iD~D~li~~ 130 (277)
-++.+++|+|++|+|||.++..++..+ | ..|+...+++.+
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 257889999999999999999998644 3 334555555543
No 121
>PTZ00301 uridine kinase; Provisional
Probab=98.69 E-value=1.1e-07 Score=83.69 Aligned_cols=37 Identities=16% Similarity=0.065 Sum_probs=28.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-------hhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-------~~~iD~D~li 128 (277)
+..+|.|.|+|||||||+|+.|++.+. ...+..|.+.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 347899999999999999999988773 2245556654
No 122
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.2e-07 Score=83.67 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=31.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh---hccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY---YFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~---~iD~D~li~ 129 (277)
+..+|.|.|++||||||+++.|.+.|+-. .+..|++.+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk 47 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYK 47 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccccc
Confidence 34789999999999999999999999844 566677654
No 123
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.66 E-value=6.6e-08 Score=88.27 Aligned_cols=131 Identities=18% Similarity=0.211 Sum_probs=62.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh-----hhccCcchhhhhcCChhHHHHhhhhhhhhhhH-HHHHHHHHhhhcCcEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQ-AETEVLKQLSSMGRLV 167 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~-----~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~-~e~~vl~~l~~~~~~V 167 (277)
++|+|+|.|||||||+|+.|++.+.- .+++.|.+.-.. . .+.....+...|. +...+.+.+ ....+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~-~-----~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iV 74 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR-N-----DYADSKKEKEARGSLKSAVERAL-SKDTIV 74 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT-S-----SS--GGGHHHHHHHHHHHHHHHH-TT-SEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch-h-----hhhchhhhHHHHHHHHHHHHHhh-ccCeEE
Confidence 57999999999999999999987643 235543333110 0 0111112222222 122233333 444677
Q ss_pred EEecCCccc--cchhhHHhh----cccEEEEecCCcceecc-cCCC----CChhHHHHHHHHHhhccc-----ccceeee
Q 023776 168 VCAGNGAVQ--SSANLALLR----HGISLWIDVPPGMVARM-DHSG----FPESELFALYKEMRDGYA-----TADVTVS 231 (277)
Q Consensus 168 Ia~g~g~v~--~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R~----l~~~~l~~~~~~r~~~y~-----~Ad~vId 231 (277)
|..+...+- ..+.+..-+ ...+||+++|.|.+.+| ..|+ ++++.+..+....+++-. ..-++|+
T Consensus 75 I~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~ 154 (270)
T PF08433_consen 75 ILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTID 154 (270)
T ss_dssp EE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE
T ss_pred EEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEe
Confidence 765543221 111122222 23689999999999999 5553 577777777655443321 1346776
No 124
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.66 E-value=2.8e-08 Score=82.59 Aligned_cols=106 Identities=22% Similarity=0.329 Sum_probs=60.7
Q ss_pred eEEEeeccchHHhhhhHHHHhhh---h--hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L---g--~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
.|+|+|.|||||||+++.|++.+ | +.+++.|.+...+.+... +..+...+.++... ...+.+...+..||.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~---~~~~~~~~~~~~~~-~~a~~l~~~G~~VIi 76 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLG---FSREDREENIRRIA-EVAKLLADAGLIVIA 76 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccC---CCcchHHHHHHHHH-HHHHHHHhCCCEEEE
Confidence 47899999999999999999988 4 346788877654432110 11111222333221 123334444555554
Q ss_pred ecCCccccchhhHHhh------cccEEEEecCCcceecccCCC
Q 023776 170 AGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHSG 206 (277)
Q Consensus 170 ~g~g~v~~~~~~~~L~------~~~vV~L~~~~e~l~~R~~R~ 206 (277)
... ......+..++ .-.+|||++|.+++.+|..++
T Consensus 77 d~~--~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~ 117 (149)
T cd02027 77 AFI--SPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKG 117 (149)
T ss_pred ccC--CCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchh
Confidence 322 11222232222 235799999999999995443
No 125
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.65 E-value=2.6e-07 Score=81.22 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=85.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhh---h-----h----hhhh-H----HHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRES---D-----E----KGYQ-Q----AET 154 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~---g-----~----~~fr-~----~e~ 154 (277)
+++.|+|.|+.||||||+++.|++.|.-..++. .+.++..| .++.+.+.+. + . ..|. + .+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v-~~trEP~~-~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~ 79 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKV-VLTREPGG-TPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEE 79 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCC-ChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999887665422 11122222 2222222111 0 0 0011 1 111
Q ss_pred HHHHHhhhcCcEEEEecC---Cccc-------cchhhH-----Hh---hcccEEEEecCCcceecc-cCCCC--ChhHHH
Q 023776 155 EVLKQLSSMGRLVVCAGN---GAVQ-------SSANLA-----LL---RHGISLWIDVPPGMVARM-DHSGF--PESELF 213 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g~---g~v~-------~~~~~~-----~L---~~~~vV~L~~~~e~l~~R-~~R~l--~~~~l~ 213 (277)
.+... ...+..||+... +.+. +.+... .. ++++++||++|+|+..+| .+|+. ++-+..
T Consensus 80 ~i~pa-l~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~ 158 (208)
T COG0125 80 VIKPA-LKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGELRDRFEKE 158 (208)
T ss_pred HHHHh-hcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCccchhhhH
Confidence 11112 234567777541 1111 011111 11 368999999999999999 55532 221111
Q ss_pred --HHHHHHhhccc----c-c--ceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 214 --ALYKEMRDGYA----T-A--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 214 --~~~~~r~~~y~----~-A--d~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
..++.-...|. . . =++||. +.+++++..+|.+.+.....
T Consensus 159 ~~~f~~kvr~~Y~~la~~~~~r~~vIda-------------~~~~e~v~~~i~~~l~~~l~ 206 (208)
T COG0125 159 DDEFLEKVREGYLELAAKFPERIIVIDA-------------SRPLEEVHEEILKILKERLG 206 (208)
T ss_pred HHHHHHHHHHHHHHHHhhCCCeEEEEEC-------------CCCHHHHHHHHHHHHHHhhc
Confidence 12222222232 1 1 267886 57899999999999987654
No 126
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=2.2e-07 Score=78.55 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=89.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh-hhhhccCcchhhhhcCCh----hHHHHhhhhhhhhhhHHHHHHHHHhhhcCc-E
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGE----SAAKAFRESDEKGYQQAETEVLKQLSSMGR-L 166 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li~~~~g~~----~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~-~ 166 (277)
.+.++++|.||+|||||.+.+.+.+ ++.+++..++.-+..+.. .-.++. ....+..+++.....+++..+.. .
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~R-klp~e~Q~~lq~~Aa~rI~~~~~~i 82 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEMR-KLPLENQRELQAEAAKRIAEMALEI 82 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHHh-cCCHHHHHHHHHHHHHHHHHhhhce
Confidence 3789999999999999999999988 666677666543322201 111122 12223334444444445544333 3
Q ss_pred EEE------ecCCcccc-ch-hhHHhhcccEEEEecCCcceecc---c-CCCC---ChhHHHHHHHH-Hhhcc--c---c
Q 023776 167 VVC------AGNGAVQS-SA-NLALLRHGISLWIDVPPGMVARM---D-HSGF---PESELFALYKE-MRDGY--A---T 225 (277)
Q Consensus 167 VIa------~g~g~v~~-~~-~~~~L~~~~vV~L~~~~e~l~~R---~-~R~l---~~~~l~~~~~~-r~~~y--~---~ 225 (277)
+++ +..|+..- |. ..+.+.++.+|.|.++++.+..| + .|.. +.+.+.++.+- |...+ + .
T Consensus 83 ivDtH~~IkTP~GylpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHqe~nR~aA~a~A~~~g 162 (189)
T COG2019 83 IVDTHATIKTPAGYLPGLPSWVLEELNPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQEMNRAAAMAYAILLG 162 (189)
T ss_pred EEeccceecCCCccCCCCcHHHHHhcCCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333 34444332 21 23455688999999999988887 3 2222 33445443221 21212 2 2
Q ss_pred cc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 226 AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 226 Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|. .+|.+. +..||+.+.+|.+.|.
T Consensus 163 atVkIV~n~------------~~~~e~Aa~eiv~~l~ 187 (189)
T COG2019 163 ATVKIVENH------------EGDPEEAAEEIVELLD 187 (189)
T ss_pred CeEEEEeCC------------CCCHHHHHHHHHHHHh
Confidence 44 355542 5789999999988875
No 127
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.63 E-value=1.1e-07 Score=83.85 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=24.6
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.|+|.|+.||||||+++.|++.|++.++
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4899999999999999999999986543
No 128
>PRK13976 thymidylate kinase; Provisional
Probab=98.62 E-value=5.6e-07 Score=79.17 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=81.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhh--ccCcchhhhhcC---ChhHHHHhhhh---h---h-hhhhHHHH----HHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--FDSDSLVFEAAG---GESAAKAFRES---D---E-KGYQQAET----EVL 157 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~--iD~D~li~~~~g---~~~i~~i~~~~---g---~-~~fr~~e~----~vl 157 (277)
+.|+|.|+.||||||+++.|++.|.-.. ... .+..+..| +..+.+++... + + ..|...-. +++
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v-~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I 79 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNV-VLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVI 79 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcce-EEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999886431 110 00111111 01122222110 0 0 01111111 112
Q ss_pred HHhhhcCcEEEEecC---Ccc-------ccchhhHHh-------hcccEEEEecCCcceecc-cCCCC---ChhHHHHHH
Q 023776 158 KQLSSMGRLVVCAGN---GAV-------QSSANLALL-------RHGISLWIDVPPGMVARM-DHSGF---PESELFALY 216 (277)
Q Consensus 158 ~~l~~~~~~VIa~g~---g~v-------~~~~~~~~L-------~~~~vV~L~~~~e~l~~R-~~R~l---~~~~l~~~~ 216 (277)
......+..||+... +.+ .+.+....+ .++++|||++|+++..+| ..+++ +.+.+.++.
T Consensus 80 ~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri~~~~~e~~~~~~l~~v~ 159 (209)
T PRK13976 80 LPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRADKNGYEFMDLEFYDKVR 159 (209)
T ss_pred HHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHhcccchhcccHHHHHHHH
Confidence 222245667887541 111 111111111 268999999999999999 44433 223333332
Q ss_pred HHHhhccc---ccceeeeHHHHHhHhCCC-cccccccchhhHHHHHHHHHHHHHH
Q 023776 217 KEMRDGYA---TADVTVSLQKVASQLGYD-DLDAVTTEDMTLEVLKEIEKLTRKK 267 (277)
Q Consensus 217 ~~r~~~y~---~Ad~vId~~~~a~~~~~~-dts~~t~eeva~~Il~~i~~~~~~~ 267 (277)
+....... ..-.+||.. . ..+-.+++++.++|++.|.+....|
T Consensus 160 ~~Y~~l~~~~~~~~~~id~~--------~~~~~~~~~e~v~~~i~~~i~~~~~~~ 206 (209)
T PRK13976 160 KGFREIVIKNPHRCHVITCI--------DAKDNIEDINSVHLEIVKLLHAVTKDK 206 (209)
T ss_pred HHHHHHHHhCCCCeEEEECC--------CCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 22222221 122455531 0 0011239999999999998887544
No 129
>PRK13974 thymidylate kinase; Provisional
Probab=98.62 E-value=1.5e-07 Score=82.72 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=24.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+|.|++||||||+++.|++.|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999885
No 130
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.62 E-value=5.4e-08 Score=84.88 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=31.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc-cCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i-D~D~li~~ 130 (277)
.+..|+++|+|||||||+|+.|++.+|+.++ .+|.+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~ 41 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF 41 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHH
Confidence 4678999999999999999999999998764 55544433
No 131
>PLN02348 phosphoribulokinase
Probab=98.62 E-value=6.9e-08 Score=91.93 Aligned_cols=47 Identities=15% Similarity=0.269 Sum_probs=34.8
Q ss_pred cccEEEEecCCcceec----c--cCCCCChhHHHHHHHHHhhcc--------cccceeeeH
Q 023776 186 HGISLWIDVPPGMVAR----M--DHSGFPESELFALYKEMRDGY--------ATADVTVSL 232 (277)
Q Consensus 186 ~~~vV~L~~~~e~l~~----R--~~R~l~~~~l~~~~~~r~~~y--------~~Ad~vId~ 232 (277)
.++.|||++|.++... | ..|+.+.+.+.+.++.|.+.+ ..||++|+.
T Consensus 183 ~D~~IyVd~~~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v 243 (395)
T PLN02348 183 LDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEV 243 (395)
T ss_pred CcEEEEEECCHHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEe
Confidence 5789999999999743 4 356888777777776666542 249999986
No 132
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.62 E-value=6.8e-08 Score=81.84 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=24.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
+..|+|+|++||||||+++.|++.++..+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 46899999999999999999998765433
No 133
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.61 E-value=1.5e-07 Score=81.38 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=77.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch-hhhhcC---Ch--------hHHHHhhh-----h---hhhhhhH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL-VFEAAG---GE--------SAAKAFRE-----S---DEKGYQQ 151 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l-i~~~~g---~~--------~i~~i~~~-----~---g~~~fr~ 151 (277)
++..|+|+|++||||||+++.|+..++..++..... ..-..| +. .....+.. . ....|..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 83 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGT 83 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccC
Confidence 578999999999999999999998775211110000 000000 00 00111000 0 0001111
Q ss_pred HHHHHHHHhhhcCcEEEEecCCccccchhhHHhh----cccEEEEe-cCCcceecc-cCCCC-ChhHHHHHHHHH---hh
Q 023776 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR----HGISLWID-VPPGMVARM-DHSGF-PESELFALYKEM---RD 221 (277)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~----~~~vV~L~-~~~e~l~~R-~~R~l-~~~~l~~~~~~r---~~ 221 (277)
. ...+......+..||... +......+. .+++||+. ++.+++.+| ..|+. +.+.+...+... ..
T Consensus 84 ~-~~~i~~~l~~g~~vi~dl-----~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~ 157 (205)
T PRK00300 84 P-RSPVEEALAAGKDVLLEI-----DWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIA 157 (205)
T ss_pred c-HHHHHHHHHcCCeEEEeC-----CHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 1 122334444455454432 122222222 23556664 556778888 66653 555555444322 12
Q ss_pred cccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 222 GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 222 ~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.+..+|++|.+ .+++++..++.+.+.+.
T Consensus 158 ~~~~~d~vi~n--------------~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 158 HASEYDYVIVN--------------DDLDTALEELKAIIRAE 185 (205)
T ss_pred hHHhCCEEEEC--------------CCHHHHHHHHHHHHHHH
Confidence 23357888864 37899999999998876
No 134
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.60 E-value=6.1e-08 Score=88.61 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=28.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhh---hhhhccCcchh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLV 128 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~li 128 (277)
.|+|+|++||||||+++.|+..+ +..++..|.+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 47899999999999999999876 35567777664
No 135
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.60 E-value=3.4e-08 Score=78.21 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.4
Q ss_pred EEEeeccchHHhhhhHHHHhhhhhh
Q 023776 96 VFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
|+|.|+|||||||+|+.|++.++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~ 25 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDI 25 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcH
Confidence 7899999999999999999987433
No 136
>PRK07667 uridine kinase; Provisional
Probab=98.59 E-value=9.5e-08 Score=82.71 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFE 130 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~ 130 (277)
...|+|.|++||||||+|+.|++.++ ..+++.|++...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 47899999999999999999999875 347888886543
No 137
>PRK06696 uridine kinase; Validated
Probab=98.58 E-value=9.2e-08 Score=84.52 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=30.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh---hhhh--ccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~--iD~D~li 128 (277)
.+.+|+|.|++||||||+|+.|++.| |..+ +..|++.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 46899999999999999999999999 4443 4567665
No 138
>PLN02165 adenylate isopentenyltransferase
Probab=98.56 E-value=8.5e-08 Score=89.65 Aligned_cols=114 Identities=18% Similarity=0.270 Sum_probs=74.3
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch--------------hhhhcCChh---HHHHhhhhhh---hhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGES---AAKAFRESDE---KGYQ 150 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l--------------i~~~~g~~~---i~~i~~~~g~---~~fr 150 (277)
.++.+|+|+|++||||||+|..||+.+++.++++|.+ .++..| .. +..+....+. ..|.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~g-v~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRG-VPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcC-CChhhhheeccccceeeHHHHH
Confidence 3577999999999999999999999999999999987 233322 11 1122222222 4566
Q ss_pred HHHHHHHHHhhhcCcEEEEecCCccc---------cchhh----------HHhh-cccEEEEecCCcceecc-cCC
Q 023776 151 QAETEVLKQLSSMGRLVVCAGNGAVQ---------SSANL----------ALLR-HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 151 ~~e~~vl~~l~~~~~~VIa~g~g~v~---------~~~~~----------~~L~-~~~vV~L~~~~e~l~~R-~~R 205 (277)
+.....+.++...+..+|.+||+... +++.. ..++ ...++||+.+.+.+.+| +.|
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~R 195 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKR 195 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHH
Confidence 66666777777677777777764311 11110 0022 12578999999999999 665
No 139
>PRK07429 phosphoribulokinase; Provisional
Probab=98.55 E-value=1.3e-07 Score=88.54 Aligned_cols=37 Identities=22% Similarity=0.094 Sum_probs=31.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---hhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~~~iD~D~li 128 (277)
++..|.|+|++||||||+++.|++.++ ..++..|.+.
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 457899999999999999999999887 4566777764
No 140
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.55 E-value=2.5e-07 Score=79.36 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.9
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.|+|.|++||||||+++.|++.+|+.++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999998887654
No 141
>COG0645 Predicted kinase [General function prediction only]
Probab=98.54 E-value=1.7e-07 Score=79.34 Aligned_cols=126 Identities=20% Similarity=0.140 Sum_probs=74.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHH-------HhhhcCcE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLK-------QLSSMGRL 166 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~-------~l~~~~~~ 166 (277)
+.+++.|.|||||||+|+.|++.+|...|.+|.+.+.+.| .+.. -......+.......++. .++..+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g-~p~~--~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~ 78 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG-VPEE--TRGPAGLYSPAATAAVYDELLGRAELLLSSGHS 78 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC-Cccc--ccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 5688999999999999999999999999999998877776 3211 111111112222222222 22334444
Q ss_pred EEEecCCccccchhhHHh----h-c---ccEEEEecCCcceecc-cCC-C-CCh---hHHHHHHHHHhhccc
Q 023776 167 VVCAGNGAVQSSANLALL----R-H---GISLWIDVPPGMVARM-DHS-G-FPE---SELFALYKEMRDGYA 224 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L----~-~---~~vV~L~~~~e~l~~R-~~R-~-l~~---~~l~~~~~~r~~~y~ 224 (277)
||..+ ....+..++.. + . ...|++.+|.+++.+| ..| + .+. ..+..+..+..++.+
T Consensus 79 VVlDa--~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~d~sDA~~~il~~q~~~~~~~~~ 148 (170)
T COG0645 79 VVLDA--TFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKGDASDATFDILRVQLAEDEPWTE 148 (170)
T ss_pred EEEec--ccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCCCcccchHHHHHHHHhhhCCccc
Confidence 44322 12223333322 2 2 2569999999999999 444 2 332 344555555555544
No 142
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.52 E-value=8e-07 Score=77.52 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---hhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~~~iD~D~li 128 (277)
++..|+|+|++||||||+++.|+..++ ..++..|...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 578899999999999999999998775 4456666653
No 143
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.49 E-value=6.2e-07 Score=75.52 Aligned_cols=156 Identities=20% Similarity=0.193 Sum_probs=92.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh--hccCcchhhhh--cCC-----hhHHHHhhhhhhhhhhH----------H
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEA--AGG-----ESAAKAFRESDEKGYQQ----------A 152 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~--~iD~D~li~~~--~g~-----~~i~~i~~~~g~~~fr~----------~ 152 (277)
++..|+++||+|+||-|+-..+...+.-. +.=.-.+|-.. .|+ .+..++....++..|.- +
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi 83 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI 83 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence 58999999999999999999888776532 11000111000 010 12223333333333321 1
Q ss_pred HHHHHHHhhhcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCCCC-ChhHHHHHHHHHhhccc--ccc-
Q 023776 153 ETEVLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGF-PESELFALYKEMRDGYA--TAD- 227 (277)
Q Consensus 153 e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~l-~~~~l~~~~~~r~~~y~--~Ad- 227 (277)
-.++-..| ..+..||+.|.-.++ ++.+.....-.+|.|.++++++++| ..|+. +.+++...+. |...|. ..|
T Consensus 84 p~eId~wl-~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGREs~eeI~aRL~-R~a~~~~~~~dv 160 (192)
T COG3709 84 PAEIDLWL-AAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGRESREEILARLA-RAARYTAGPGDV 160 (192)
T ss_pred chhHHHHH-hCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhccCCHHHHHHHHH-hhcccccCCCCe
Confidence 11222222 346678877765444 3433333334789999999999999 77776 5677777664 344454 355
Q ss_pred eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 228 VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 228 ~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.+||| +..+++..+..+..+.+.
T Consensus 161 ~~idN-------------sG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 161 TTIDN-------------SGELEDAGERLLALLHQD 183 (192)
T ss_pred EEEcC-------------CCcHHHHHHHHHHHHHhh
Confidence 67887 478888888887777643
No 144
>PRK15453 phosphoribulokinase; Provisional
Probab=98.49 E-value=4.5e-07 Score=83.03 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=32.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~ 129 (277)
++.+|+|+|.|||||||+++.|++.++ ..+++.|.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 468999999999999999999998775 45688888764
No 145
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.48 E-value=4.3e-07 Score=79.46 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
.+..|+|+|++||||||+++.|.+.
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5688999999999999999999763
No 146
>PRK12338 hypothetical protein; Provisional
Probab=98.45 E-value=5.7e-07 Score=83.72 Aligned_cols=40 Identities=15% Similarity=0.103 Sum_probs=33.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc-cCcchhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEA 131 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i-D~D~li~~~ 131 (277)
++..|+|.|+|||||||+|+.||+++|+.++ ++|.+.+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~ 43 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVV 43 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHH
Confidence 4578999999999999999999999999987 555554433
No 147
>PRK07933 thymidylate kinase; Validated
Probab=98.42 E-value=7.2e-07 Score=78.57 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+.|+|.|+.||||||+++.|++.|...
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~ 27 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEAR 27 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 469999999999999999999998643
No 148
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.37 E-value=3.1e-07 Score=79.51 Aligned_cols=35 Identities=29% Similarity=0.315 Sum_probs=31.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhh-hhhhccCcchhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVF 129 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li~ 129 (277)
+|+|.|.+||||||+|+.|++.+ +..+++.|.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccC
Confidence 48899999999999999999998 688888888764
No 149
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.37 E-value=5.9e-07 Score=88.95 Aligned_cols=92 Identities=23% Similarity=0.238 Sum_probs=59.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
++.+|+++|+|||||||+|+.++..+|+.+++.|.+ | . +..+...+...|.....+||...
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l-----g-~-------------~~~~~~~a~~~L~~G~sVVIDaT 428 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL-----G-S-------------TQNCLTACERALDQGKRCAIDNT 428 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH-----H-H-------------HHHHHHHHHHHHhCCCcEEEECC
Confidence 568899999999999999999999999999999875 2 1 11111122223333334555433
Q ss_pred CCccccchhhH---Hh-h-cc---cEEEEecCCcceecc-cCC
Q 023776 172 NGAVQSSANLA---LL-R-HG---ISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 172 ~g~v~~~~~~~---~L-~-~~---~vV~L~~~~e~l~~R-~~R 205 (277)
. .++..+. .+ + .+ ..||+++|.+++.+| ..|
T Consensus 429 n---~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 429 N---PDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred C---CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 2 2222222 12 2 33 579999999999888 455
No 150
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.37 E-value=1.5e-06 Score=74.44 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=22.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+..|+|+||+||||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998875
No 151
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.36 E-value=4e-07 Score=77.85 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++.|+|+||+|||||||++.|.+.++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998765
No 152
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.33 E-value=6.5e-07 Score=77.00 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=25.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+|..|+|+||+|+|||||.+.|-+..++.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~ 31 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLR 31 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeE
Confidence 57899999999999999999998876443
No 153
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.33 E-value=2.8e-06 Score=78.53 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=34.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh-hccCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~-~iD~D~li~~ 130 (277)
.+..|+|.|++||||||+|..||+.||+. ++.+|.+.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~ 130 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREV 130 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHH
Confidence 46789999999999999999999999997 6788877633
No 154
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.29 E-value=3.1e-06 Score=77.07 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=30.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~ 129 (277)
.|+|+|.+||||||+++.|++.|+ ..+++.|.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 489999999999999999998775 45789998876
No 155
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.27 E-value=3e-06 Score=72.31 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred EeeccchHHhhhhHHHHhhhhhhhc
Q 023776 98 LVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 98 L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
|.|+.||||||+++.|++.|.-..+
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~ 25 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGY 25 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999876554
No 156
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.26 E-value=4.5e-06 Score=81.18 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=35.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh-hccCcchhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-YFDSDSLVFEAA 132 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~-~iD~D~li~~~~ 132 (277)
++..|+++|++||||||++..||..+|+. ++.+|.+.+.+.
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr 295 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLR 295 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHH
Confidence 47889999999999999999999999997 678888765443
No 157
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.25 E-value=9.8e-07 Score=75.57 Aligned_cols=110 Identities=22% Similarity=0.361 Sum_probs=58.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHH-HHhhhhh--------------------------hh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAA-KAFRESD--------------------------EK 147 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~-~i~~~~g--------------------------~~ 147 (277)
+|.|.|..|||++++|+.||+.||++++|- +++.+......++ +.+...+ ..
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHH
Confidence 588999999999999999999999999998 5554443211110 0111111 11
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEecCCccccchhhHHhh---cccEEEEecCCcceecc-cCC-CCChhHH
Q 023776 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHS-GFPESEL 212 (277)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~---~~~vV~L~~~~e~l~~R-~~R-~l~~~~l 212 (277)
.+.....+++.+++..+++||.-.++.. .|+ +.+-|||.+|.+.+++| ..| +++++..
T Consensus 80 ~~~~~~~~~i~~la~~~~~Vi~GR~a~~-------il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A 142 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKGNCVIVGRCANY-------ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEA 142 (179)
T ss_dssp HHHHHHHHHHHHHHH---EEEESTTHHH-------HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHH
T ss_pred HHHHHHHHHHHHHhccCCEEEEecCHhh-------hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHH
Confidence 1222334566777666677665222211 222 34789999999999999 444 6665443
No 158
>COG4639 Predicted kinase [General function prediction only]
Probab=98.17 E-value=7.9e-06 Score=68.42 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=67.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCc-EEEEecC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR-LVVCAGN 172 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~-~VIa~g~ 172 (277)
..++|+|.+||||||.++.. .+....++.|++.... |...-.+.........+...... +++....+. .|+..-
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~l-g~~~~~e~sqk~~~~~~~~l~~~-l~qrl~~Gk~tiidAt- 77 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLL-GVSASKENSQKNDELVWDILYKQ-LEQRLRRGKFTIIDAT- 77 (168)
T ss_pred eEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHh-hhchhhhhccccHHHHHHHHHHH-HHHHHHcCCeEEEEcc-
Confidence 67899999999999999974 3457778888776543 20000111111122233333222 333333333 555432
Q ss_pred CccccchhhHHh----h-cc---cEEEEecCCcceecc-cC--CCCChhHHHHHHHH
Q 023776 173 GAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DH--SGFPESELFALYKE 218 (277)
Q Consensus 173 g~v~~~~~~~~L----~-~~---~vV~L~~~~e~l~~R-~~--R~l~~~~l~~~~~~ 218 (277)
-+.++++..+ . .+ +.||++.|++.+.+| .. |..+.+.+..++..
T Consensus 78 --n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r~~r~ 132 (168)
T COG4639 78 --NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPRMLRE 132 (168)
T ss_pred --cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHHHHHH
Confidence 1334444432 1 22 579999999999999 33 34577777666555
No 159
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.16 E-value=2.7e-06 Score=72.85 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=29.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~ 129 (277)
+|+|.|++||||||+|+.|++.++ ..+++.|++..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 488999999999999999999874 35677787765
No 160
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.07 E-value=3.9e-06 Score=80.75 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=43.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcc--hhh-hhcCChhHHHHhhhhhhhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS--LVF-EAAGGESAAKAFRESDEKGYQ 150 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~--li~-~~~g~~~i~~i~~~~g~~~fr 150 (277)
..+..|+|+|+||||||++|+.||+.++.+|++.|. +++ ...| ..+..++....+..|+
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG-~dvE~i~r~l~e~A~~ 106 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG-RDVESMVRDLTDAAVK 106 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc-CCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999988884 443 2344 4455555555555544
No 161
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=2.4e-05 Score=70.36 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=34.1
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhhhhhhh-ccCcchhhh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~-iD~D~li~~ 130 (277)
+..+.+|+|-|.+|+||||+|..||.+||+.. +.+|.+.+-
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREv 127 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREV 127 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHH
Confidence 34578888899999999999999999999875 677776543
No 162
>PHA00729 NTP-binding motif containing protein
Probab=98.01 E-value=4.7e-06 Score=74.10 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=30.5
Q ss_pred hhhcccccccccceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 81 KKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
++.+.++... ...+|+|+|+||+||||+|..|++.++..
T Consensus 6 k~~~~~l~~~-~f~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 6 KKIVSAYNNN-GFVSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred HHHHHHHhcC-CeEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3446666554 33589999999999999999999988743
No 163
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.01 E-value=1.2e-05 Score=69.80 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhhh---hhhhccCcchhhh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFE 130 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~li~~ 130 (277)
.-++..|++.|+|||||||++..+.+.+ ++.+||.|.+...
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 3467899999999999999999999987 5778999987644
No 164
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.99 E-value=2.2e-06 Score=73.51 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=31.2
Q ss_pred CceeeeccCCCCCccceeeeeccCCch--hhhhh-ccccccc---ccceeEEEeeccchHHhhhhHHHHhhh---h--hh
Q 023776 52 PRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE---LKGTSVFLVGMNNAIKTHLGKFLADAL---R--YY 120 (277)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~d~~~--~l~~~-~~~~~~~---~~~~~I~L~G~~GSGKSTvak~LA~~L---g--~~ 120 (277)
+|++++++++|+++. ..+++.||+.. ..++. ..++..+ -.+..++|.|++|+|||.+|..++..+ | ..
T Consensus 1 ~r~~~~~l~~a~lp~-~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~ 79 (178)
T PF01695_consen 1 QRRIERRLKQAGLPP-DATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVL 79 (178)
T ss_dssp ----------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EE
T ss_pred CCccccccccccccc-ccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCccee
Confidence 467889999999984 78899999876 33333 4444333 357899999999999999999998644 2 33
Q ss_pred hccCcchhhh
Q 023776 121 YFDSDSLVFE 130 (277)
Q Consensus 121 ~iD~D~li~~ 130 (277)
|++..+++.+
T Consensus 80 f~~~~~L~~~ 89 (178)
T PF01695_consen 80 FITASDLLDE 89 (178)
T ss_dssp EEEHHHHHHH
T ss_pred EeecCceecc
Confidence 4555555544
No 165
>PRK05439 pantothenate kinase; Provisional
Probab=97.99 E-value=8.3e-06 Score=75.87 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=29.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh-------hhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~-------~~iD~D~li 128 (277)
.+.+|+|+|++||||||+|+.|++.++- .++..|.+.
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 4578999999999999999999997752 346666654
No 166
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=97.96 E-value=5.7e-06 Score=77.55 Aligned_cols=154 Identities=18% Similarity=0.233 Sum_probs=86.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh---hhhh--ccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~--iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~ 165 (277)
+++-.||++|.+|+||||++-+|.+.| |+++ +|.|.+..-+.. .+ .+..+++++..|.+. + +.++.....
T Consensus 48 frgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~k--nl-gfs~edreenirria-e-vaklfadag 122 (627)
T KOG4238|consen 48 FRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNK--NL-GFSPEDREENIRRIA-E-VAKLFADAG 122 (627)
T ss_pred ccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhh--cc-CCCchhHHHHHHHHH-H-HHHHHhcCC
Confidence 678899999999999999999998765 5555 688887654432 11 123345566665542 2 234433333
Q ss_pred EEEEecCCccc--cchhhHHhh-----cccEEEEecCCcceecccCCCCC----hhHHHHHHHHHhhccc---ccceeee
Q 023776 166 LVVCAGNGAVQ--SSANLALLR-----HGISLWIDVPPGMVARMDHSGFP----ESELFALYKEMRDGYA---TADVTVS 231 (277)
Q Consensus 166 ~VIa~g~g~v~--~~~~~~~L~-----~~~vV~L~~~~e~l~~R~~R~l~----~~~l~~~~~~r~~~y~---~Ad~vId 231 (277)
.|..+..-.+. +..+...++ ..+.||+++|++++.+|+.+++. ..++.-.-.. +.-|+ .+.++++
T Consensus 123 lvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgi-ds~ye~pe~~e~vl~ 201 (627)
T KOG4238|consen 123 LVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGI-DSDYEKPETPERVLK 201 (627)
T ss_pred ceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhcccccccccc-ccccCCCCChhHHhh
Confidence 33322211111 122222222 23679999999999999543321 1112111111 12343 3556666
Q ss_pred HHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 232 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 232 ~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++ .-++.+.++++++.+++
T Consensus 202 t~------------~~~v~~cvqqvve~lq~ 220 (627)
T KOG4238|consen 202 TN------------LSTVSDCVQQVVELLQE 220 (627)
T ss_pred cC------------CchHHHHHHHHHHHHHh
Confidence 52 45677777777777664
No 167
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.96 E-value=1.1e-05 Score=71.41 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=26.8
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh-------hhhccCcchh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSLV 128 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg-------~~~iD~D~li 128 (277)
+|.|.|++||||||+++.|+..+. ..++..|.+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 478999999999999999999874 2345556553
No 168
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.92 E-value=1.2e-05 Score=74.18 Aligned_cols=27 Identities=15% Similarity=0.095 Sum_probs=23.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+.+|+|.|++||||||+++.|+..+.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999987664
No 169
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.88 E-value=2.9e-05 Score=77.62 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=36.6
Q ss_pred ccCCchhhh-hhcccccccc-cceeEEEeeccchHHhhhhHHHHhhhh-hhhccCcch
Q 023776 73 AEDPSFAVK-KKAADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (277)
Q Consensus 73 ~~d~~~~l~-~~~~~~~~~~-~~~~I~L~G~~GSGKSTvak~LA~~Lg-~~~iD~D~l 127 (277)
+||-.|-+- ++++.+.... ...+|+|.|++||||||+++.|+..++ ...+..|..
T Consensus 43 sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 43 SFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred ccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 566666222 3344443322 347899999999999999999998773 234555554
No 170
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.85 E-value=5.4e-06 Score=65.69 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=27.3
Q ss_pred EEEeeccchHHhhhhHHHHhhhhhhhc--cCcchh
Q 023776 96 VFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLV 128 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li 128 (277)
|+|.|+||+||||+++.+|+.++..++ +...+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc
Confidence 689999999999999999999997664 444443
No 171
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.84 E-value=2.4e-05 Score=72.76 Aligned_cols=36 Identities=31% Similarity=0.279 Sum_probs=33.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
++..|+|+||+|||||++|..||+.++..++++|.+
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 357899999999999999999999999999999984
No 172
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.77 E-value=1e-05 Score=58.51 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|+|+|++||||||+++.|++.|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 173
>PLN02748 tRNA dimethylallyltransferase
Probab=97.77 E-value=2.8e-05 Score=76.05 Aligned_cols=36 Identities=25% Similarity=0.295 Sum_probs=33.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
++..|+|+|++|||||++|..||+.++..+|++|.+
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm 56 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM 56 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence 457899999999999999999999999999999963
No 174
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.73 E-value=6.8e-05 Score=63.17 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=37.4
Q ss_pred cccccccccceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchhhhh
Q 023776 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVFEA 131 (277)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li~~~ 131 (277)
+.+-+++.++++|+|-|.+.+|||++|..+.+-.. |-++-.|.+++..
T Consensus 14 ~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~l 63 (205)
T COG3896 14 LAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEAL 63 (205)
T ss_pred HHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhC
Confidence 56667788899999999999999999999987554 4445556666543
No 175
>PLN02840 tRNA dimethylallyltransferase
Probab=97.69 E-value=4.6e-05 Score=73.54 Aligned_cols=36 Identities=28% Similarity=0.259 Sum_probs=32.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
++..|+|+|++||||||++..|++.++..+|+.|.+
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 456899999999999999999999999888888874
No 176
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.69 E-value=5.8e-05 Score=72.85 Aligned_cols=36 Identities=14% Similarity=0.287 Sum_probs=32.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~ 126 (277)
..+..|+|+|+||||||++|+.||+.++.+|+..|.
T Consensus 48 ~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 346889999999999999999999999999887764
No 177
>PHA03132 thymidine kinase; Provisional
Probab=97.68 E-value=5.1e-05 Score=75.82 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=25.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
++..|+|.|..||||||+++.|++.+|..
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~lg~~ 284 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGILGDN 284 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 37899999999999999999999987433
No 178
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.67 E-value=4.3e-05 Score=70.38 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=30.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
.|+|+|++|||||+++..|++.++..+|++|.+
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 489999999999999999999999999998874
No 179
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00013 Score=72.72 Aligned_cols=110 Identities=22% Similarity=0.320 Sum_probs=69.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhcc--CcchhhhhcCC--hhHHHHhhhh-------------------hhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG--ESAAKAFRES-------------------DEK 147 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~g~--~~i~~i~~~~-------------------g~~ 147 (277)
.+++=|+|-||||||||.+|+.+|..+|++|+. +-+++-.+.|. ..+.++|.+. ++.
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~ 300 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE 300 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh
Confidence 356779999999999999999999999999964 45566555441 2355555542 233
Q ss_pred hhhHHHHHHHHHhhh-c---------CcEEEEecCCccccchhhH-Hhh----cccEEEEecCCcceecc
Q 023776 148 GYQQAETEVLKQLSS-M---------GRLVVCAGNGAVQSSANLA-LLR----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 148 ~fr~~e~~vl~~l~~-~---------~~~VIa~g~g~v~~~~~~~-~L~----~~~vV~L~~~~e~l~~R 202 (277)
.-+++|++++.+|+. + +.-|+.-|. --.++..+ .|+ .+..|.|.+|.++..++
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA--TnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~ 368 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA--TNRPDSLDPALRRAGRFDREICLGVPSETAREE 368 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEec--CCCCcccCHHHhccccccceeeecCCchHHHHH
Confidence 457788888888763 1 122222221 11122211 333 45789999999875554
No 180
>PLN02772 guanylate kinase
Probab=97.54 E-value=0.00019 Score=68.68 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=26.7
Q ss_pred cccccccc------cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 84 AADISTEL------KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 84 ~~~~~~~~------~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
..|+...- ..+.|+|+||+|+||+||.+.|.+.+
T Consensus 120 ~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 120 GTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 55555442 34689999999999999999998765
No 181
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.54 E-value=3.8e-05 Score=71.82 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=37.9
Q ss_pred eeeeccCCchhhhhh-ccc-ccccccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 69 TKVAAEDPSFAVKKK-AAD-ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 69 ~~~~~~d~~~~l~~~-~~~-~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
..++..|+.+..... ... +..+..+..|+|+|+|||||||+++.||+.+|++++
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 345566665533322 111 122234678999999999999999999999999875
No 182
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0001 Score=63.51 Aligned_cols=159 Identities=17% Similarity=0.206 Sum_probs=81.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhcc---Ccchhhhh--cCChhHHHHhhhh----hh---hhhh--HHH--H
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD---SDSLVFEA--AGGESAAKAFRES----DE---KGYQ--QAE--T 154 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD---~D~li~~~--~g~~~i~~i~~~~----g~---~~fr--~~e--~ 154 (277)
.++..|++.|..+|||||.++.|.+.+. .-.+ .+.+.+.. .| ..+..++... .. ..|. +.| .
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~-~~~~~~~l~~FP~Rst~iG-k~i~~YL~k~~dl~d~~iHLlFSAnRwe~~~ 80 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLI-PGLDPAELLRFPERSTSIG-KLIDGYLRKKSDLPDHTIHLLFSANRWEHVS 80 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHH-hccChHHhhhcchhccccc-HHHHHHHHhccCCcHHHHHHHhccchhhHHH
Confidence 3678999999999999999999988773 2221 11111111 11 2222222111 00 0111 011 1
Q ss_pred HHHHHhhhcCcEEEEec---CCccccc-----------hhhHHhhcccEEEEecCCcceecccCCCCCh----hHHHHHH
Q 023776 155 EVLKQLSSMGRLVVCAG---NGAVQSS-----------ANLALLRHGISLWIDVPPGMVARMDHSGFPE----SELFALY 216 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g---~g~v~~~-----------~~~~~L~~~~vV~L~~~~e~l~~R~~R~l~~----~~l~~~~ 216 (277)
.+.++++ .+..+|+.. .|+.... ....+++++.++||++|++.+.+|.++|.-+ +..+...
T Consensus 81 ~i~e~l~-kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~~a~rggfG~Erye~v~fqekv~ 159 (208)
T KOG3327|consen 81 LIKEKLA-KGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPEDAARRGGFGEERYETVAFQEKVL 159 (208)
T ss_pred HHHHHHh-cCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCHHHHHHhcCcchhHHHHHHHHHHHH
Confidence 2334443 333344432 1222110 1123456899999999999988886665411 1111221
Q ss_pred HHHhhcc--cccc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 217 KEMRDGY--ATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 217 ~~r~~~y--~~Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.-+.... +... .++|. ..++|++...|...++....
T Consensus 160 ~~~q~l~r~e~~~~~~vDA-------------s~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 160 VFFQKLLRKEDLNWHVVDA-------------SKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHhccCCCeEEEec-------------CccHHHHHHHHHHHHHHhcc
Confidence 1111111 1222 57775 37888888888877776554
No 183
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.53 E-value=0.00026 Score=62.90 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh-----hccCcchhhhhcCChhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY-----YFDSDSLVFEAAGGESAAKAFRESDE 146 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~-----~iD~D~li~~~~g~~~i~~i~~~~g~ 146 (277)
.+.+|+++|.|+.|||++|+.|++.|.|. +++.+++.++..+...-.+.|....+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~ 70 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNE 70 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-H
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCCh
Confidence 35789999999999999999999999875 45666777776663222344544333
No 184
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.51 E-value=3.9e-05 Score=69.77 Aligned_cols=111 Identities=13% Similarity=0.197 Sum_probs=61.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhh-------ccCcch------hhh--hcCChhHHHHhhhhhhhhhhHHHHH-
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY-------FDSDSL------VFE--AAGGESAAKAFRESDEKGYQQAETE- 155 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~-------iD~D~l------i~~--~~g~~~i~~i~~~~g~~~fr~~e~~- 155 (277)
.+.+|+|.|.+|+||||.|+.|+..+.... +-+|-+ +++ ++..+..++.|.- ..|.+.-..
T Consensus 81 ~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~---~~ll~fl~~v 157 (283)
T COG1072 81 RPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDV---AALLRFLSDV 157 (283)
T ss_pred CCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccH---HHHHHHHHHH
Confidence 468899999999999999999998775321 222221 111 0000111222211 112111000
Q ss_pred ----------HHHHh-----------hhcCcEEEEecCCccccchhhHHhh--cccEEEEecCCcceecc-cCC
Q 023776 156 ----------VLKQL-----------SSMGRLVVCAGNGAVQSSANLALLR--HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 156 ----------vl~~l-----------~~~~~~VIa~g~g~v~~~~~~~~L~--~~~vV~L~~~~e~l~~R-~~R 205 (277)
+..++ ....+.+|..|.....+...|..+. .+++||+|++.+.+.+| ..|
T Consensus 158 K~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~R 231 (283)
T COG1072 158 KAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIER 231 (283)
T ss_pred hcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHH
Confidence 00111 1123466666665555555565665 68999999999999998 444
No 185
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.48 E-value=0.00024 Score=58.13 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.4
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.|+|+|++||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378999999999999999998754
No 186
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=6e-05 Score=58.78 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=25.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+..++|+|++||||||+++.++..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5689999999999999999999887654
No 187
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00019 Score=66.65 Aligned_cols=112 Identities=21% Similarity=0.304 Sum_probs=69.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhH-------------H-HHhh------hhhhhhhhH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA-------------A-KAFR------ESDEKGYQQ 151 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i-------------~-~i~~------~~g~~~fr~ 151 (277)
+.+.|+|+|+.|||||-|+--||.+++...|++|.+ +.+.|..+ + .+.. +.-...|+.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkm--QvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKM--QVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccce--eeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH
Confidence 457899999999999999999999999999998876 22221100 0 0000 111234666
Q ss_pred HHHHHHHHhhhcCcEEEEecCCccccchhh-------------------HHhhc-ccEEEEecCCcceecc-cCC
Q 023776 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANL-------------------ALLRH-GISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~-------------------~~L~~-~~vV~L~~~~e~l~~R-~~R 205 (277)
.-..+.+.+.+.++.-|..||+-..-+... .-++. ...+||+++..++.+| .+|
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence 556677777766664444554322101000 01122 3689999999999999 555
No 188
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.44 E-value=6.9e-05 Score=62.59 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=21.6
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.|+|+|.+||||||+++.|++. |+.++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4899999999999999999997 88877
No 189
>PRK06761 hypothetical protein; Provisional
Probab=97.42 E-value=6e-05 Score=69.25 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=27.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
++.|+|+|++||||||+++.|++.++...++.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 568999999999999999999999986544443
No 190
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.42 E-value=0.00079 Score=64.86 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=26.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
...|+|+|++||||||+++.|++.+|..++
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 477999999999999999999999887754
No 191
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.38 E-value=9.1e-05 Score=59.99 Aligned_cols=27 Identities=37% Similarity=0.293 Sum_probs=24.6
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
.|+|+|+||+|||++++.+|+.++.++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcce
Confidence 378999999999999999999998765
No 192
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.35 E-value=0.00013 Score=61.54 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
..+.|+|||+||+||||+++.+++.|.-.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 35789999999999999999999888543
No 193
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=8.9e-05 Score=68.98 Aligned_cols=31 Identities=32% Similarity=0.231 Sum_probs=27.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+.|.|.||||+|||+++|.||++|.++..|
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~ 207 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTND 207 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecC
Confidence 5779999999999999999999999877543
No 194
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.31 E-value=0.00027 Score=65.51 Aligned_cols=34 Identities=18% Similarity=0.249 Sum_probs=30.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
++.|+|+||.|||||.+|-.||++ +...|++|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence 468999999999999999999999 4588898875
No 195
>PRK09087 hypothetical protein; Validated
Probab=97.30 E-value=0.00024 Score=63.21 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=30.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
.+.++|+|++|||||++++.+++..+..|++.+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~ 78 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI 78 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence 45699999999999999999999888888887543
No 196
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.27 E-value=0.00013 Score=64.86 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
-..++|.||||+||||+|..+|..+|..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 357999999999999999999999997763
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00044 Score=69.37 Aligned_cols=53 Identities=25% Similarity=0.312 Sum_probs=39.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc--CcchhhhhcCC--hhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAGG--ESAAKAFRES 144 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~g~--~~i~~i~~~~ 144 (277)
+++-|.+.||||||||++||.+|..-+..|+. .-+++..+.|. ..+.++|...
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kA 523 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKA 523 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHH
Confidence 46779999999999999999999988877765 45566666662 2344555543
No 198
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00013 Score=73.80 Aligned_cols=39 Identities=36% Similarity=0.465 Sum_probs=34.0
Q ss_pred ccccccccceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
..+...++|+++||+||||+|||++|+-+|+.+|..|+-
T Consensus 342 ~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 342 QKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred HHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 445555889999999999999999999999999988753
No 199
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.20 E-value=2.4e-05 Score=70.87 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=60.3
Q ss_pred CcccCCCccccccccccccccceeeeeeecCCceeeeccCCCCCccceeeeeccCCch--hhhhh-ccccccc----ccc
Q 023776 21 GLKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSF--AVKKK-AADISTE----LKG 93 (277)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~l~~~-~~~~~~~----~~~ 93 (277)
+.++.+.+...... +...|..|...++++.+.++. .++...||+.+ .+.++ ..++..+ ..+
T Consensus 38 ~~~~~~~~~~~~~~-----------~~~~~~~r~~~~~~~~a~~p~-~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~ 105 (254)
T COG1484 38 EWGYAEFLEYLLEE-----------EKLAREARKIERRLRSASFPA-KKTFEEFDFEFQPGIDKKALEDLASLVEFFERG 105 (254)
T ss_pred cccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhcCCc-cCCcccccccCCcchhHHHHHHHHHHHHHhccC
Confidence 34455555555555 667788888888888877765 46677777766 44544 3333222 367
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..++|.|+||+|||.++-+++..+-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH
Confidence 8999999999999999999987664
No 200
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.17 E-value=0.00014 Score=72.27 Aligned_cols=31 Identities=26% Similarity=0.234 Sum_probs=27.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
..+++|+||+||||||..+.||+.||+.+.+
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4578999999999999999999999987654
No 201
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.17 E-value=0.00023 Score=60.60 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=28.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLV 128 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li 128 (277)
+.|+|+|++||||||+|..++..++ +.|+.+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~ 38 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF 38 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC
Confidence 5799999999999999999999877 4566664433
No 202
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.16 E-value=0.00022 Score=68.92 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=30.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
....|+|+|++|||||++|+.||..++++|+..|
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id 140 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD 140 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence 4578999999999999999999999998887544
No 203
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.16 E-value=0.00021 Score=56.30 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=23.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|++|+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999877
No 204
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.15 E-value=0.00021 Score=64.81 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=28.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.+..|+|+|++|+|||++|+.||..+|.+++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4678999999999999999999999987764
No 205
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.15 E-value=0.00025 Score=58.20 Aligned_cols=37 Identities=32% Similarity=0.219 Sum_probs=30.6
Q ss_pred cccccccc-cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 84 AADISTEL-KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 84 ~~~~~~~~-~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
++.+...+ .+..|+|.|.+|+||||+++.+++.||+.
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 44555554 46799999999999999999999999864
No 206
>PF13173 AAA_14: AAA domain
Probab=97.14 E-value=0.00029 Score=56.68 Aligned_cols=37 Identities=30% Similarity=0.216 Sum_probs=30.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh----hhhccCcchhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSLVF 129 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg----~~~iD~D~li~ 129 (277)
.+.++|+|+.||||||+++.+++.+. +.+++.|+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 57899999999999999999998765 66777776543
No 207
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.13 E-value=0.00032 Score=63.34 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=24.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.....++|.|+|||||||+|+.+|+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999876
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.13 E-value=0.00027 Score=66.98 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=25.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+.+.++|+|||||||||+|+.|+..|+-
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578899999999999999999999875
No 209
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.11 E-value=0.00024 Score=63.14 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=27.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhh-ccCcchhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYY-FDSDSLVFE 130 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~-iD~D~li~~ 130 (277)
++|+|+|+|||||||+++.+.+ .|..+ +.....+++
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~ 37 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKE 37 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHH
Confidence 4799999999999999999976 46555 555444443
No 210
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.10 E-value=0.00028 Score=64.86 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..++|+|+|||||||+|+.+++.+.
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445799999999999999998887663
No 211
>CHL00181 cbbX CbbX; Provisional
Probab=97.09 E-value=0.00025 Score=65.33 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|.|+|||||||+|+.+++.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999865
No 212
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.05 E-value=0.00029 Score=69.43 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=30.9
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
+-+...+.+|+||+||||||.-+.|++.+|+.++.
T Consensus 106 ~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 106 PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 33667889999999999999999999999998764
No 213
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00033 Score=70.94 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=34.4
Q ss_pred ccccccccceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+|.+-..|++++++||||.|||++|+-+|++||..|+.
T Consensus 430 ~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR 468 (906)
T KOG2004|consen 430 GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR 468 (906)
T ss_pred HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE
Confidence 456666889999999999999999999999999988753
No 214
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.00099 Score=61.90 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=33.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
+..|+|+||.+||||.+|-.||+++|..+|++|+.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm 37 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM 37 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence 57899999999999999999999999999999986
No 215
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.94 E-value=0.00042 Score=66.99 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=27.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
+..|+|+||+|||||++|+.||+.++++|+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~ 145 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFA 145 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeE
Confidence 468999999999999999999999987775
No 216
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.93 E-value=0.00044 Score=58.56 Aligned_cols=33 Identities=12% Similarity=0.151 Sum_probs=29.7
Q ss_pred EEEeeccchHHhhhhHHHHhhhh-hhhccCcchh
Q 023776 96 VFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV 128 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg-~~~iD~D~li 128 (277)
|+=++.+||||||+|..|+.-+| |.++-.|++-
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~ 35 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNIT 35 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCCC
Confidence 34478999999999999999999 9999999984
No 217
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.92 E-value=0.00058 Score=55.68 Aligned_cols=27 Identities=37% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 96 VFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
|.|.|+||+||||+++.||+.+|..|-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999998764
No 218
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.0011 Score=59.22 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=35.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA 131 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~ 131 (277)
++...+++|+||+||.|++..+++.++..++.+.+++++.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ 53 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDE 53 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHH
Confidence 4678999999999999999999999999999988877664
No 219
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.90 E-value=0.0006 Score=64.93 Aligned_cols=42 Identities=14% Similarity=0.031 Sum_probs=34.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.+..+.|.||||||||.+|+++|..+|..++ ++.++.....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 3566788899999999999999999998864 56667666666
No 220
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.89 E-value=0.00058 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|+|||.||+||||+.+.+.+.|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 221
>PRK06620 hypothetical protein; Validated
Probab=96.88 E-value=0.0016 Score=57.39 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=25.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
..++|.|++|||||++++.+++..+..++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 579999999999999999999887765554
No 222
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.87 E-value=0.00049 Score=67.93 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=29.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
.++-|.|.||||||||.+|+.+|..+|++++..|
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4677999999999999999999999998876543
No 223
>PRK10536 hypothetical protein; Provisional
Probab=96.85 E-value=0.00029 Score=63.96 Aligned_cols=56 Identities=14% Similarity=0.095 Sum_probs=38.8
Q ss_pred cCCCCCcccee-eeeccCCchhhhhh---cccccccccceeEEEeeccchHHhhhhHHHHh
Q 023776 59 IADDTTSNTVT-KVAAEDPSFAVKKK---AADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 59 ~~~~~~~~~~~-~~~~~d~~~~l~~~---~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+.++++. .. .++++|+...-++- ..-+.......+++++|++|||||++|..++.
T Consensus 37 ~~~~~~p~-~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 37 VQMGGVEA-IGMARDSRDTSPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred HhhccCCc-cccchhhcCCccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHH
Confidence 45566765 44 78888887733322 12222224567999999999999999999886
No 224
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.83 E-value=0.00056 Score=65.59 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+||||||++|+.+|..++..++.
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~ 195 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 195 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEE
Confidence 45679999999999999999999999877643
No 225
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.82 E-value=0.00063 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEeeccchHHhhhhHHHHhhhh
Q 023776 96 VFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
|+|.|++|+|||++++.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998775
No 226
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.82 E-value=0.00058 Score=53.92 Aligned_cols=34 Identities=24% Similarity=0.120 Sum_probs=25.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
.+..++|+|++||||||+.+.+. -|-..++.|++
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 36889999999999999999987 23334555544
No 227
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.78 E-value=0.00095 Score=54.00 Aligned_cols=29 Identities=34% Similarity=0.250 Sum_probs=24.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
.+..|+|.|..||||||++|.+++.||..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 46889999999999999999999999864
No 228
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=96.77 E-value=0.0043 Score=55.22 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=23.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+.|+|+|.|.|||||.|+.|.+.|.
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~ 26 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALK 26 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHH
Confidence 5799999999999999999998874
No 229
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.00077 Score=60.44 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=26.9
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++.-..++. +|.++.|+|.+||||||+++.|+-
T Consensus 22 ~l~~VS~~i~---~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 22 ALNNVSLEIE---RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred hhcceeEEec---CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 4443345544 689999999999999999999973
No 230
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.00066 Score=64.78 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=27.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
.+.+|.||||+||||+|+.+|...+..|.-..
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 56789999999999999999999998875443
No 231
>PHA02244 ATPase-like protein
Probab=96.76 E-value=0.0007 Score=64.45 Aligned_cols=59 Identities=22% Similarity=0.322 Sum_probs=41.4
Q ss_pred eeeeccCCchhhhhh-----ccccccc-ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 69 TKVAAEDPSFAVKKK-----AADISTE-LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 69 ~~~~~~d~~~~l~~~-----~~~~~~~-~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
..+.++|+.+.-... ...+... -.+..|+|.|++|||||++++.++..+|++|+..+.+
T Consensus 89 ~~l~~~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 89 GDISGIDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred CchhhCCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 467888888722111 1122222 2467899999999999999999999999888755433
No 232
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.74 E-value=0.00063 Score=59.39 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..|+|+|++|||||++++.++..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999997653
No 233
>PF05729 NACHT: NACHT domain
Probab=96.74 E-value=0.0009 Score=54.76 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+.++|+|.+|+||||+++.++..+...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhc
Confidence 368999999999999999999876543
No 234
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.74 E-value=0.00075 Score=63.93 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=27.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+||||||++++.++..++..++.
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~ 186 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIR 186 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEe
Confidence 35679999999999999999999999877654
No 235
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.71 E-value=0.00094 Score=57.19 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..|.|+||+||||||+-|.+|.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHh
Confidence 578999999999999999999986
No 236
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.68 E-value=0.0021 Score=60.86 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=63.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHh-hhhhhhhhhHHHHHHHHHhhh--cCcEEE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAF-RESDEKGYQQAETEVLKQLSS--MGRLVV 168 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~-~~~g~~~fr~~e~~vl~~l~~--~~~~VI 168 (277)
+...+++.|+.|||||++...|.+. |+..+|...+.+- .| .....+. .+.....| |..+...+.. ....|+
T Consensus 140 ~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rG-S~fG~~~~~qpsQ~~F---e~~l~~~l~~~~~~~~i~ 213 (345)
T PRK11784 140 QFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RG-SSFGRLGGPQPSQKDF---ENLLAEALLKLDPARPIV 213 (345)
T ss_pred cCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-cc-ccccCCCCCCcchHHH---HHHHHHHHHcCCCCCeEE
Confidence 3456789999999999999999874 7889998776543 23 1111111 11122334 3333333322 123444
Q ss_pred EecC----C-ccccchhhHHhhcccEEEEecCCcceecc
Q 023776 169 CAGN----G-AVQSSANLALLRHGISLWIDVPPGMVARM 202 (277)
Q Consensus 169 a~g~----g-~v~~~~~~~~L~~~~vV~L~~~~e~l~~R 202 (277)
..+. | +.+-..-++.|+.+.+|+|++|.|.+++|
T Consensus 214 vE~Es~~IG~~~lP~~l~~~m~~~~~v~i~~~~e~Rv~~ 252 (345)
T PRK11784 214 VEDESRRIGRVHLPEALYEAMQQAPIVVVEAPLEERVER 252 (345)
T ss_pred EEeccccccCccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 4332 2 22323346777788999999999999988
No 237
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.68 E-value=0.0011 Score=52.62 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+..++|+|++|+|||++++.+++.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 57899999999999999999998774
No 238
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.67 E-value=0.00092 Score=62.65 Aligned_cols=30 Identities=20% Similarity=0.092 Sum_probs=27.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
...|+|+|.+||||||+++.|+..+|..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999998888764
No 239
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.67 E-value=0.00088 Score=64.51 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=28.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+||||||++++.+|..++..++.
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 56789999999999999999999998877654
No 240
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.67 E-value=0.00091 Score=56.99 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=23.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
..+++|+||+|+|||.+|+.||+.|..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 367899999999999999999998875
No 241
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.67 E-value=0.00091 Score=66.02 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=28.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
+..++|.||||||||++++.+|..++.+++..
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 46799999999999999999999998887654
No 242
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.66 E-value=0.00097 Score=62.22 Aligned_cols=29 Identities=24% Similarity=0.225 Sum_probs=26.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
...++|.|+||+||||+++.+|+.+++.+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 46789999999999999999999998754
No 243
>PRK04195 replication factor C large subunit; Provisional
Probab=96.66 E-value=0.00083 Score=66.13 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=28.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
+..++|.|+||+||||+++.||+.+|+.++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999877643
No 244
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0021 Score=60.43 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=33.2
Q ss_pred ccccccccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++.....+++|.++||.|.|||-+|+.||+-.|.+|+
T Consensus 42 ~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFi 79 (444)
T COG1220 42 EELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFI 79 (444)
T ss_pred HHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 45555567899999999999999999999998898886
No 245
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.64 E-value=0.001 Score=60.97 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
...++|+|+||+|||++++.+|..++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35689999999999999999999987543
No 246
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.62 E-value=0.0049 Score=60.09 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=29.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li 128 (277)
++..|+++|++|+||||++..||..|. ..++++|...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 467899999999999999999997763 2347887653
No 247
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.62 E-value=0.0011 Score=58.58 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=27.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
..++|.||+|+|||.+|-.||+++|+++|..|.+
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4688999999999999999999999999988876
No 248
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0011 Score=61.85 Aligned_cols=39 Identities=28% Similarity=0.371 Sum_probs=32.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVF 129 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~ 129 (277)
+...+|.|+||.|||||-+|+-||+.|+.+|. |+-.+-+
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTE 135 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTE 135 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhh
Confidence 66799999999999999999999999999885 4444433
No 249
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.60 E-value=0.0011 Score=58.24 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=29.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-----hhhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-----g~~~iD~D~li 128 (277)
....++|+|++|||||++++.++..+ .+.++++..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 35689999999999999999999876 45566665543
No 250
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.011 Score=54.77 Aligned_cols=40 Identities=28% Similarity=0.329 Sum_probs=32.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.-|+|.||||+|||.+|+++|..-+-.|+ ++.+++.+.+|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMG 208 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhc
Confidence 34999999999999999999987776664 45567777776
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.57 E-value=0.0012 Score=55.46 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=26.7
Q ss_pred eEEEeeccchHHhhhhHHHHhhh---h--hhhccCcch
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDSL 127 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L---g--~~~iD~D~l 127 (277)
.++++|++|+||||++..++..+ | ..++|.|..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 57899999999999999998765 3 345788854
No 252
>PRK10646 ADP-binding protein; Provisional
Probab=96.57 E-value=0.00096 Score=55.99 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=30.1
Q ss_pred ccccccccc-ceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 84 AADISTELK-GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 84 ~~~~~~~~~-~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
++.|+.+++ +..|+|.|.-|+||||++|.+++.||..
T Consensus 18 ~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 18 GARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred HHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 444555543 6789999999999999999999999863
No 253
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0053 Score=59.50 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=29.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh------hhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg------~~~iD~D~li 128 (277)
++..|+|+|++||||||++..||..+. ..++++|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 357799999999999999999997553 3357888754
No 254
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0015 Score=58.74 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..+.|+|++||||||+-+.+|-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999984
No 255
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.0041 Score=54.37 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=29.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh-hhhccCcchh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSLV 128 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg-~~~iD~D~li 128 (277)
.+|.|.|.+.|||||+|+.|.+.++ ..+|.-|++.
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFy 40 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFY 40 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCeeecccccc
Confidence 5788999999999999999998775 5567777665
No 256
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.48 E-value=0.0013 Score=63.41 Aligned_cols=32 Identities=25% Similarity=0.172 Sum_probs=27.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
...++|+|+||+||||+|+.+++.++..++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 35789999999999999999999888766543
No 257
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.47 E-value=0.0016 Score=57.72 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.5
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
+|..++|+||+||||||+-|.|.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999999985
No 258
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.0023 Score=54.13 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=28.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh--hhhhccCcchhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEA 131 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L--g~~~iD~D~li~~~ 131 (277)
+..-++-|+.||||||+-...-..+ +..++++|.+..+.
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 3456677999999999966543322 46789999987654
No 259
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.44 E-value=0.0017 Score=54.36 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=20.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
.+.+++|+|++|+|||++.+.+.+.+.-.
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999988877654
No 260
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.43 E-value=0.0016 Score=52.24 Aligned_cols=26 Identities=42% Similarity=0.393 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+..+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEccCCCccccceeeecccc
Confidence 57899999999999999999997644
No 261
>PF13245 AAA_19: Part of AAA domain
Probab=96.42 E-value=0.0023 Score=47.21 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=17.4
Q ss_pred ceeEEEeeccchHHh-hhhHHHHhh
Q 023776 93 GTSVFLVGMNNAIKT-HLGKFLADA 116 (277)
Q Consensus 93 ~~~I~L~G~~GSGKS-Tvak~LA~~ 116 (277)
....+|.|+|||||| |+++.++..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 466777999999999 555555443
No 262
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.41 E-value=0.0017 Score=63.30 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=28.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..++|.|+||||||++++.+|..++..++.
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 45779999999999999999999998877653
No 263
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.39 E-value=0.0019 Score=56.32 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999999853
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.38 E-value=0.0015 Score=58.17 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++|+|++|||||+++..++..+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998665
No 265
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.37 E-value=0.002 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.++-
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999974
No 266
>PRK13695 putative NTPase; Provisional
Probab=96.36 E-value=0.0023 Score=54.07 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.|+|+|.+||||||+.+.++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999987765
No 267
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.36 E-value=0.002 Score=55.90 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999853
No 268
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.35 E-value=0.002 Score=64.56 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++++++|+||||+||||+++.|++.|.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 678999999999999999999998775
No 269
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.35 E-value=0.0021 Score=56.07 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999753
No 270
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.34 E-value=0.0019 Score=60.37 Aligned_cols=32 Identities=38% Similarity=0.397 Sum_probs=29.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
+.+..+.|.|+||+|||++++.+|+.+|++|+
T Consensus 41 ~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 41 LAGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred HcCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 46789999999999999999999999998764
No 271
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.34 E-value=0.0021 Score=55.84 Aligned_cols=25 Identities=48% Similarity=0.502 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.++-.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 272
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.33 E-value=0.0022 Score=57.45 Aligned_cols=26 Identities=27% Similarity=0.192 Sum_probs=23.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+..++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998765
No 273
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0025 Score=60.22 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=35.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
+++=|.|.||||+|||-+||++|...+..|| -+-+++.++.|
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiG 227 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIG 227 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhc
Confidence 5677999999999999999999999998886 44567777776
No 274
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.33 E-value=0.0022 Score=55.62 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 275
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0022 Score=55.63 Aligned_cols=25 Identities=32% Similarity=0.264 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 6789999999999999999999853
No 276
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0022 Score=56.73 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 277
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.32 E-value=0.0021 Score=66.97 Aligned_cols=32 Identities=41% Similarity=0.509 Sum_probs=28.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++..++|.||||+|||++|+.+|+.++..++
T Consensus 345 ~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 345 MKGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 45678999999999999999999999987765
No 278
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.31 E-value=0.0013 Score=58.81 Aligned_cols=61 Identities=13% Similarity=0.089 Sum_probs=38.0
Q ss_pred CceeeeccCCCCCccceeeeeccCCchhhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 52 PRITTRSIADDTTSNTVTKVAAEDPSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+.++.|+..+..+ .....+.|+= .+++...|.+. ...++.|.|+||+||||++.+++.+..
T Consensus 84 ~~~va~~~~~qv~---~~D~s~~de~--y~~~~e~L~~n-~~~l~glag~pGtgkst~~a~v~~aWp 144 (323)
T KOG2702|consen 84 PNKVAEMIENQVL---FKDHSEDDEF--YPVKYEALTSN-NEELTGLAGRPGTGKSTRIAAVDNAWP 144 (323)
T ss_pred hhHHHHHHHhccc---ccCcchhhhh--hHHHHHHhccc-chheeeeecCCCCcchhHHHHHHhhcc
Confidence 4445566655543 1123333332 23335555444 347899999999999999999998644
No 279
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.31 E-value=0.0021 Score=53.76 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li 128 (277)
.+.-|+|+|++|+||||++..|.++ |+.++.-|...
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v~ 48 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADDRVV 48 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEEE
Confidence 4688999999999999999999874 78888655443
No 280
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.31 E-value=0.012 Score=57.34 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=28.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh------hhhccCcchh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLV 128 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg------~~~iD~D~li 128 (277)
+..|+++|++||||||++..||..+- ..++|+|...
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R 140 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR 140 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 57899999999999999998887642 2358888654
No 281
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0022 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999843
No 282
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.29 E-value=0.0023 Score=55.84 Aligned_cols=25 Identities=40% Similarity=0.359 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999753
No 283
>CHL00176 ftsH cell division protein; Validated
Probab=96.28 E-value=0.0023 Score=65.22 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=28.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
+..|+|.|+||+|||++|+.+|...+.+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 45799999999999999999999998887643
No 284
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.27 E-value=0.0024 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=22.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+||+||||||+-..++-
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999999874
No 285
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.27 E-value=0.0034 Score=53.76 Aligned_cols=28 Identities=25% Similarity=0.012 Sum_probs=24.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+...|.|+|++||||||+.+.|...|.-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4568999999999999999999887754
No 286
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.26 E-value=0.0025 Score=55.61 Aligned_cols=25 Identities=40% Similarity=0.337 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 287
>PLN02796 D-glycerate 3-kinase
Probab=96.26 E-value=0.0029 Score=59.75 Aligned_cols=27 Identities=15% Similarity=-0.080 Sum_probs=24.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++.+|+|.|++||||||+++.|...+.
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 457899999999999999999998774
No 288
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0025 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 289
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.25 E-value=0.0023 Score=56.45 Aligned_cols=25 Identities=32% Similarity=0.255 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999753
No 290
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.25 E-value=0.0025 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999999843
No 291
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.25 E-value=0.0034 Score=54.61 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=28.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhh-----hhccCcchh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLV 128 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~-----~~iD~D~li 128 (277)
|..|+|+|++|+||||.+-.||..+.. .++..|...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 478999999999999999999977653 245666553
No 292
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.25 E-value=0.0026 Score=55.86 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999998644
No 293
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.24 E-value=0.0024 Score=63.40 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=25.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
.+..|+|.||||||||++++.+|..++..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 45779999999999999999999998654
No 294
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.24 E-value=0.0025 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.273 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 295
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.0026 Score=55.67 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 296
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.23 E-value=0.0027 Score=54.81 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 297
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.23 E-value=0.0024 Score=55.50 Aligned_cols=25 Identities=32% Similarity=0.275 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999753
No 298
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.23 E-value=0.0027 Score=53.60 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 299
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0065 Score=60.92 Aligned_cols=42 Identities=24% Similarity=0.258 Sum_probs=33.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC--cchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~--D~li~~~~g 133 (277)
.+.=|.|+||||||||-+||++|..-|..||.. -+++.++.|
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG 587 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG 587 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence 356799999999999999999999988888764 344544444
No 300
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0028 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999998543
No 301
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.20 E-value=0.0028 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999753
No 302
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.20 E-value=0.0033 Score=59.79 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=26.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
.++..|+|+|.+||||||+++.|...|.-.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~ 32 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER 32 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC
Confidence 468999999999999999999999888643
No 303
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.20 E-value=0.0028 Score=54.85 Aligned_cols=25 Identities=44% Similarity=0.478 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 304
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.19 E-value=0.0029 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998543
No 305
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0029 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999853
No 306
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.0028 Score=59.70 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=21.8
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
.|..++|+||+||||||+-+.+|
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999999998
No 307
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.18 E-value=0.0033 Score=53.86 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-++..++|+|++||||||+.+.|+-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHc
Confidence 3689999999999999999999974
No 308
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0031 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999999974
No 309
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.16 E-value=0.003 Score=54.28 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999754
No 310
>PRK04296 thymidine kinase; Provisional
Probab=96.16 E-value=0.004 Score=53.67 Aligned_cols=25 Identities=20% Similarity=-0.011 Sum_probs=22.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+..++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999988766
No 311
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.16 E-value=0.003 Score=55.20 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 312
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.15 E-value=0.0034 Score=54.78 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.9
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcc
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~ 126 (277)
+..++..+.|+|+|||||||++..++.... ..|+|++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 345789999999999999999999986542 33677654
No 313
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.15 E-value=0.0031 Score=55.84 Aligned_cols=24 Identities=38% Similarity=0.361 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999999984
No 314
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.14 E-value=0.0033 Score=53.86 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.+++|+|++||||||+.+.|...+
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46899999999999999999997654
No 315
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.14 E-value=0.003 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999864
No 316
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.14 E-value=0.0034 Score=54.46 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=21.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.|+|+|++||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877654
No 317
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0032 Score=55.93 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999984
No 318
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0032 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 319
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.12 E-value=0.0031 Score=55.16 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999853
No 320
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.12 E-value=0.0032 Score=55.28 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.++-.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999999853
No 321
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.11 E-value=0.0031 Score=55.45 Aligned_cols=26 Identities=38% Similarity=0.365 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999998543
No 322
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.11 E-value=0.0033 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 323
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.11 E-value=0.0033 Score=54.04 Aligned_cols=24 Identities=42% Similarity=0.357 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999974
No 324
>PLN03025 replication factor C subunit; Provisional
Probab=96.10 E-value=0.0026 Score=59.20 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=22.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.++|.|+||+||||+++.+|+.+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999887
No 325
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0033 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.277 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 326
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.10 E-value=0.0034 Score=50.87 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.8
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.++|+|++|+||||+++.++..+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999987653
No 327
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.10 E-value=0.00083 Score=62.49 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=46.3
Q ss_pred eeecCCceeeeccCCCCCccc--eeeeeccCCchhhh----hh----cccccccccceeEEEeeccchHHhhhhHHHHhh
Q 023776 47 IISRKPRITTRSIADDTTSNT--VTKVAAEDPSFAVK----KK----AADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 47 ~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~l~----~~----~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
...|+.+.+.++++.++++.. .+++++||+...-+ +. +........+..++|.|++|+|||+++.+++..
T Consensus 100 ~~~r~~~~~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 100 IEADEEKAIKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred HHHHHHHHHHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 344666777778888887641 36777777654111 11 111111113568999999999999999999987
Q ss_pred h
Q 023776 117 L 117 (277)
Q Consensus 117 L 117 (277)
+
T Consensus 180 l 180 (306)
T PRK08939 180 L 180 (306)
T ss_pred H
Confidence 6
No 328
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.09 E-value=0.0034 Score=54.66 Aligned_cols=25 Identities=36% Similarity=0.283 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 329
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.08 E-value=0.0034 Score=55.90 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999853
No 330
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0034 Score=56.50 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 331
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0033 Score=54.58 Aligned_cols=24 Identities=42% Similarity=0.351 Sum_probs=21.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++ .++|+|++||||||+.+.++-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCC
Confidence 36 8999999999999999999853
No 332
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0035 Score=56.04 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999853
No 333
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.08 E-value=0.0059 Score=55.67 Aligned_cols=55 Identities=24% Similarity=0.211 Sum_probs=40.4
Q ss_pred hhhhhccccccc---------ccceeEEEeeccchHHhhhhHHHHhhhhhhhcc--CcchhhhhcC
Q 023776 79 AVKKKAADISTE---------LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (277)
Q Consensus 79 ~l~~~~~~~~~~---------~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~g 133 (277)
.-|+||.=|..+ --+++|.+.||||+|||-+||.||.....+++. +-.++-+..|
T Consensus 128 eAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 128 EAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred HHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 556667555544 236899999999999999999999988877754 4445555444
No 334
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.07 E-value=0.0036 Score=54.87 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999974
No 335
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.07 E-value=0.0028 Score=52.81 Aligned_cols=28 Identities=36% Similarity=0.290 Sum_probs=26.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
.+..|+|.|.-|+||||++|.+++.||.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 6899999999999999999999999984
No 336
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.06 E-value=0.0037 Score=54.99 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 57999999999999999999998543
No 337
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.06 E-value=0.0043 Score=56.32 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+...|.|||+||+||||+...|...+-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 467999999999999999999987664
No 338
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.05 E-value=0.0029 Score=65.45 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=32.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC--cchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~--D~li~~~~g 133 (277)
.+..|+|.|+||||||++|+.+|..++..|+.. .++.....|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG 529 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG 529 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence 356699999999999999999999999887643 344444444
No 339
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0036 Score=56.31 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999854
No 340
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0036 Score=55.83 Aligned_cols=25 Identities=20% Similarity=0.188 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999854
No 341
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.05 E-value=0.0037 Score=52.53 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 342
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.0038 Score=61.47 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
..++|+||||+||||+|+.+|+.++.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 55899999999999999999998864
No 343
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.04 E-value=0.0028 Score=65.51 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+|||||||+++.+|..++..++.
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEE
Confidence 45789999999999999999999999877653
No 344
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0038 Score=53.92 Aligned_cols=24 Identities=42% Similarity=0.415 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 679999999999999999999974
No 345
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.04 E-value=0.0037 Score=54.97 Aligned_cols=25 Identities=36% Similarity=0.297 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 346
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.003 Score=62.21 Aligned_cols=42 Identities=26% Similarity=0.226 Sum_probs=32.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCc--chhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD--SLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D--~li~~~~g 133 (277)
.+..|.|.||||||||.+|+++|..++.+|+..+ ++..+..|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vG 318 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVG 318 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccc
Confidence 3457999999999999999999998888886543 44444444
No 347
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.03 E-value=0.0038 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.254 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999999975
No 348
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.03 E-value=0.0038 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G 55 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVAS 55 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999999974
No 349
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.02 E-value=0.0038 Score=55.31 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 350
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.02 E-value=0.0039 Score=52.79 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTG 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999974
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.01 E-value=0.0041 Score=56.24 Aligned_cols=36 Identities=25% Similarity=0.144 Sum_probs=30.5
Q ss_pred cccccccccceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+.-+.|.-+|..+.|+|++|+||||+++.++..+..
T Consensus 7 id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 7 VDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred eeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 445567778999999999999999999999987654
No 352
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.01 E-value=0.0037 Score=61.02 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=24.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..|+|.|+||+|||++|+.||..++
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999998875
No 353
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.00 E-value=0.0038 Score=55.77 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999999853
No 354
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.99 E-value=0.0047 Score=57.78 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=28.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~l 127 (277)
++..|.|+|++|+||||++..||..+. ..++++|..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 468999999999999999999997663 234677754
No 355
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0039 Score=55.04 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 356
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.99 E-value=0.0042 Score=52.07 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 679999999999999999999974
No 357
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.98 E-value=0.0041 Score=55.00 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 358
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.004 Score=55.58 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999975
No 359
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.98 E-value=0.004 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999998543
No 360
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.98 E-value=0.004 Score=54.97 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999999853
No 361
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0042 Score=55.82 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999854
No 362
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0041 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.198 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999854
No 363
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.97 E-value=0.0037 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 6789999999999999999999754
No 364
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0041 Score=55.54 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999854
No 365
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.97 E-value=0.0044 Score=52.29 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999999975
No 366
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0042 Score=55.52 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 367
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.96 E-value=0.0043 Score=53.38 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999753
No 368
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.96 E-value=0.0042 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6789999999999999999999854
No 369
>PRK06893 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.0049 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.++|.|++|+|||+++..++..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999775
No 370
>PRK10908 cell division protein FtsE; Provisional
Probab=95.95 E-value=0.0043 Score=54.33 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999999743
No 371
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.95 E-value=0.0024 Score=54.00 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=27.7
Q ss_pred cccccccccceeEEEeeccchHHhhhhHHHHhh
Q 023776 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..+|...++++.++|+|.+|+||||+.+.|...
T Consensus 26 ~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 26 IEELKELLKGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455566678899999999999999999998654
No 372
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.0045 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
..++|+|++|+||||+|+.+|+.+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 56799999999999999999998864
No 373
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.95 E-value=0.0043 Score=53.87 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999753
No 374
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.95 E-value=0.0052 Score=56.21 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=28.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh---hh--hhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L---g~--~~iD~D~l 127 (277)
++..|.++|++|+||||++..||..+ |. .++|+|..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35789999999999999999999766 32 34788864
No 375
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.95 E-value=0.0043 Score=52.82 Aligned_cols=26 Identities=23% Similarity=0.186 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998543
No 376
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.95 E-value=0.0043 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999998543
No 377
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.95 E-value=0.0044 Score=52.62 Aligned_cols=24 Identities=42% Similarity=0.347 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999975
No 378
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.94 E-value=0.0044 Score=55.66 Aligned_cols=25 Identities=12% Similarity=0.111 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999853
No 379
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.94 E-value=0.0052 Score=50.59 Aligned_cols=25 Identities=36% Similarity=0.360 Sum_probs=21.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+.|.++|+.||||||+++.|...|-
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999987664
No 380
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.94 E-value=0.0044 Score=55.23 Aligned_cols=25 Identities=24% Similarity=0.208 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRM 50 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999999853
No 381
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0044 Score=54.40 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999999998543
No 382
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0044 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999999853
No 383
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.92 E-value=0.005 Score=53.64 Aligned_cols=26 Identities=31% Similarity=0.190 Sum_probs=22.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+..|.|+|++||||||+.+.+...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 36799999999999999999887653
No 384
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.92 E-value=0.0045 Score=55.32 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57999999999999999999998643
No 385
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.92 E-value=0.0041 Score=64.80 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=28.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++..|+|+|+||+||||+++.+++.++..++
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 46789999999999999999999999998774
No 386
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.92 E-value=0.0054 Score=57.75 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|.|+|+|||||||+...|...+.
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999877664
No 387
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0045 Score=55.21 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999984
No 388
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.91 E-value=0.0048 Score=51.98 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.++-.
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999999753
No 389
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.91 E-value=0.0043 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.0
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+.|.|+|++||||||+++.|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999999965
No 390
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.90 E-value=0.0046 Score=55.86 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999999985
No 391
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0047 Score=53.58 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6799999999999999999999753
No 392
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.0047 Score=53.92 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.++-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 393
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.90 E-value=0.0048 Score=54.54 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.++-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999854
No 394
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.89 E-value=0.0047 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999753
No 395
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.89 E-value=0.0047 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
++..++|+|++||||||+-+.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999999884
No 396
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.88 E-value=0.0048 Score=54.05 Aligned_cols=25 Identities=36% Similarity=0.259 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999754
No 397
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.88 E-value=0.0049 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.++-
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G 53 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLG 53 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999974
No 398
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.88 E-value=0.0048 Score=55.06 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 5789999999999999999999853
No 399
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.88 E-value=0.0047 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 400
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.87 E-value=0.0047 Score=58.49 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.6
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
++..+.|.||+||||||+-+++|
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IA 52 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIA 52 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999999998
No 401
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.87 E-value=0.005 Score=56.07 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..+.|+|-+||||||+|+.+..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L 62 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGL 62 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcC
Confidence 5799999999999999999999753
No 402
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.87 E-value=0.005 Score=53.32 Aligned_cols=25 Identities=40% Similarity=0.349 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999754
No 403
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.87 E-value=0.0048 Score=50.75 Aligned_cols=25 Identities=40% Similarity=0.436 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999753
No 404
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.86 E-value=0.0048 Score=54.38 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G 70 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAG 70 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999999985
No 405
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0049 Score=55.72 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999999853
No 406
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.86 E-value=0.005 Score=53.70 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999753
No 407
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.86 E-value=0.005 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999854
No 408
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.86 E-value=0.0044 Score=55.94 Aligned_cols=25 Identities=32% Similarity=0.341 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999853
No 409
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.86 E-value=0.0051 Score=53.60 Aligned_cols=26 Identities=38% Similarity=0.409 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++|+||||+-|++....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 57899999999999999999997543
No 410
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.85 E-value=0.0048 Score=56.83 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=23.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
..++|.|++|+||||+++.+++.++..+
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 4566699999999999999999887544
No 411
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.85 E-value=0.0051 Score=53.94 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999999753
No 412
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.85 E-value=0.0046 Score=61.19 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999999964
No 413
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.85 E-value=0.0053 Score=59.67 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=29.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh---hh--hhccCcchh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDSLV 128 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L---g~--~~iD~D~li 128 (277)
+..|.|+|++||||||++..||..+ |+ .++++|...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 5789999999999999999999766 43 357888754
No 414
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0051 Score=54.84 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999853
No 415
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0052 Score=54.90 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999999999853
No 416
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0051 Score=55.01 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999984
No 417
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.005 Score=54.89 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999974
No 418
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0051 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl 58 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGI 58 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999999853
No 419
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.83 E-value=0.0042 Score=63.27 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=30.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
.+.++..|+|+||-||||+|..+|+.-||.+++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEe
Confidence 5668889999999999999999999999999764
No 420
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.005 Score=55.85 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 421
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.83 E-value=0.005 Score=55.80 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 422
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.82 E-value=0.0047 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~G 55 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAG 55 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcC
Confidence 579999999999999999999975
No 423
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0045 Score=64.23 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=25.7
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++|+||+|+|||++|+.||+.++.+++
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 6899999999999999999999987765
No 424
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.82 E-value=0.0053 Score=54.82 Aligned_cols=24 Identities=13% Similarity=0.229 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 579999999999999999999974
No 425
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.0052 Score=60.46 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
..++|+|++|+||||+|+.||+.++..
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 568999999999999999999988753
No 426
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0052 Score=56.28 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|.+++|+|++||||||+.+.|+-.+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999998543
No 427
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.81 E-value=0.0048 Score=56.70 Aligned_cols=29 Identities=28% Similarity=0.258 Sum_probs=26.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
--.++|.||||-||||+|..+|..+|..+
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 35699999999999999999999999764
No 428
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.81 E-value=0.0049 Score=55.99 Aligned_cols=36 Identities=31% Similarity=0.351 Sum_probs=28.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh----hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR----YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg----~~~iD~D~l 127 (277)
++..++|+||.||||||+-|.++.-+. -.++|...+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 579999999999999999999987543 345565443
No 429
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0049 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999853
No 430
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.81 E-value=0.0055 Score=56.65 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.9
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.++|.|++|+||||+++.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998773
No 431
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.81 E-value=0.006 Score=59.10 Aligned_cols=26 Identities=15% Similarity=-0.102 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+|+|.|++||||||+++.|...+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999998766
No 432
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0054 Score=55.49 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 44 EKTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999854
No 433
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.80 E-value=0.0055 Score=55.45 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57999999999999999999998643
No 434
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0056 Score=54.56 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRM 52 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5799999999999999999999853
No 435
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0055 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 28 ENQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999985
No 436
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.79 E-value=0.0056 Score=53.42 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999999974
No 437
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0056 Score=53.96 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 6799999999999999999999753
No 438
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.78 E-value=0.0056 Score=54.34 Aligned_cols=25 Identities=40% Similarity=0.340 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 439
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.78 E-value=0.0046 Score=55.47 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=18.8
Q ss_pred EeeccchHHhhhhHHHHhhhhh
Q 023776 98 LVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 98 L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
++||+||||||.++.+.+-+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999987653
No 440
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0055 Score=55.56 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999998543
No 441
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.77 E-value=0.0057 Score=53.38 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999853
No 442
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.77 E-value=0.0056 Score=54.92 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.++-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999999998643
No 443
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.77 E-value=0.0059 Score=58.12 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=25.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh--hhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~i 122 (277)
+.|+.|.|+|+||||||.+|-.+|+.|| .+|+
T Consensus 48 ~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~ 81 (398)
T PF06068_consen 48 IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFV 81 (398)
T ss_dssp -TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EE
T ss_pred ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCee
Confidence 4579999999999999999999999998 4553
No 444
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0056 Score=55.51 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999854
No 445
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.006 Score=57.10 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..+.|+|++||||||+++.|+-.+
T Consensus 32 ~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 32 QGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57999999999999999999998644
No 446
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.76 E-value=0.006 Score=51.11 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEeeccchHHhhhhHHHHhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.|+|+|++||||||++..|...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988764
No 447
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0057 Score=54.71 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999999854
No 448
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.76 E-value=0.0077 Score=52.11 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=29.6
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhhh---h--hhhccCcc
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADAL---R--YYYFDSDS 126 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~L---g--~~~iD~D~ 126 (277)
..++..+.|+|+||||||+++..++... | ..|+|++.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3578999999999999999999988543 2 45677765
No 449
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.76 E-value=0.0059 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 579999999999999999999974
No 450
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.76 E-value=0.0052 Score=55.18 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=31.6
Q ss_pred CchhhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 76 PSFAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+-|+|+.-.+++. ++..|.|+|.+||||||+.|.||-.+
T Consensus 39 ~~~aL~disf~i~---~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 39 EFWALKDISFEIY---KGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred eEEEecCceEEEe---CCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 3347776667766 68999999999999999999998543
No 451
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0055 Score=55.75 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 452
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0058 Score=54.94 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 61 (258)
T PRK14268 37 KNSVTALIGPSGCGKSTFIRCLNRM 61 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999853
No 453
>PRK10867 signal recognition particle protein; Provisional
Probab=95.75 E-value=0.007 Score=58.94 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=28.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh----hh--hhccCcchh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL----RY--YYFDSDSLV 128 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L----g~--~~iD~D~li 128 (277)
+..|+++|++||||||++..||..| |. .++++|...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 5789999999999999888888655 33 358888654
No 454
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0053 Score=54.28 Aligned_cols=25 Identities=40% Similarity=0.381 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (237)
T PRK11614 30 QGEIVTLIGANGAGKTTLLGTLCGD 54 (237)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999999753
No 455
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.74 E-value=0.0058 Score=54.80 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 456
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.74 E-value=0.0059 Score=54.92 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.++-.
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999853
No 457
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0058 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999854
No 458
>PRK14974 cell division protein FtsY; Provisional
Probab=95.73 E-value=0.0069 Score=57.12 Aligned_cols=36 Identities=28% Similarity=0.289 Sum_probs=27.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---h--hhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~--~~iD~D~l 127 (277)
++..|+|+|++|+||||++..||..|. + .++++|.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 357899999999999998888886553 2 24677754
No 459
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.73 E-value=0.007 Score=55.56 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=28.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-------hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-------~~~iD~D~l 127 (277)
.+.+|+|+|++|+||||++..||..+. ..+++.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 467899999999999999999997652 225677764
No 460
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0061 Score=54.44 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|.+++|+|++||||||+.+.|+-
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G 52 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNR 52 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999999985
No 461
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.72 E-value=0.006 Score=52.55 Aligned_cols=26 Identities=27% Similarity=0.200 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998644
No 462
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.71 E-value=0.0062 Score=55.30 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|+-.+
T Consensus 49 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 49 ENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999999998643
No 463
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.0048 Score=58.90 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=27.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
+-|+++||||+|||-+||++|...|..||+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTFFNV 276 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTFFNV 276 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEe
Confidence 4589999999999999999999999888753
No 464
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.71 E-value=0.0062 Score=53.33 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998543
No 465
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.70 E-value=0.0066 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
....|+|+|++|+||||+|..+++..
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDL 43 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHH
T ss_pred CeEEEEEEcCCcCCcceeeeeccccc
Confidence 46889999999999999999999763
No 466
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=95.70 E-value=0.038 Score=46.58 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=45.5
Q ss_pred HHHhhhcCcEEEEecC--CccccchhhHHhhcccEEEEecCCcceecc--c---CCC--CChhHHHHHHHHHhhcc----
Q 023776 157 LKQLSSMGRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVARM--D---HSG--FPESELFALYKEMRDGY---- 223 (277)
Q Consensus 157 l~~l~~~~~~VIa~g~--g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R--~---~R~--l~~~~l~~~~~~r~~~y---- 223 (277)
.+++...+ .||..|- |.++.|+ .++-|||+++++++++| . ..+ .+.+++..-+.+|+..-
T Consensus 56 Qr~~a~~~-~vV~eGRDigTvVfPd------A~~KifLtAs~e~RA~RR~~e~~~~g~~~~~e~v~~~i~~RD~~D~~R~ 128 (157)
T PF02224_consen 56 QREIAKKG-GVVMEGRDIGTVVFPD------ADLKIFLTASPEVRARRRYKELQEKGKKVSYEEVLEDIKERDERDSNRE 128 (157)
T ss_dssp HHHHHTTS-CEEEEESSCCCCCCTT-------SEEEEEE--HHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHcC-CeEEecCCCceEEcCC------CCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhChhhccCc
Confidence 34454433 4555562 4555454 36899999999999998 1 222 23344443344443211
Q ss_pred ----cc-cc-eeeeHHHHHhHhCCCcccccccchhhHHHHH
Q 023776 224 ----AT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLK 258 (277)
Q Consensus 224 ----~~-Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~ 258 (277)
.. .| ++|| ||++++++++++|++
T Consensus 129 ~aPL~~a~DAi~ID------------ts~lti~evv~~il~ 157 (157)
T PF02224_consen 129 VAPLKKAEDAIVID------------TSNLTIEEVVEKILE 157 (157)
T ss_dssp SS-SS--TTSEEEE------------TTTS-HHHHHHHHHH
T ss_pred cCCCccCCCeEEEE------------CCCCCHHHHHHHHhC
Confidence 11 23 4555 479999999999875
No 467
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0063 Score=54.74 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 56 (259)
T PRK14260 32 RNKVTAIIGPSGCGKSTFIKTLNRI 56 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999853
No 468
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.70 E-value=0.0062 Score=55.04 Aligned_cols=26 Identities=35% Similarity=0.268 Sum_probs=23.3
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
-++..++|+|++||||||+.+.|+-.
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999999753
No 469
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0064 Score=55.32 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 30 EGSKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999999853
No 470
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=95.69 E-value=0.0061 Score=55.25 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 61 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGL 61 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 471
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=95.69 E-value=0.0068 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|.+++|+|.+||||||+++.|+-.+
T Consensus 41 ~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 41 AGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 57999999999999999999998644
No 472
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.69 E-value=0.0062 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGL 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999854
No 473
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.69 E-value=0.0061 Score=62.99 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=27.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
...++|.|+||+||||+|+.++..++..++..+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 357899999999999999999998876665443
No 474
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.68 E-value=0.0071 Score=59.56 Aligned_cols=28 Identities=36% Similarity=0.497 Sum_probs=25.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+.+..|+|.|+||+|||++|+.|+...+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhc
Confidence 5678999999999999999999998764
No 475
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.68 E-value=0.0064 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 29 RGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999999998643
No 476
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.0064 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+++.|+..+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 67999999999999999999998644
No 477
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.67 E-value=0.0064 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.++-.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999999754
No 478
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.67 E-value=0.0039 Score=55.36 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=25.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS 126 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~ 126 (277)
+..++|.|.||+||||+|+.|+. ...+++.|.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 46799999999999999999963 244555554
No 479
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=95.67 E-value=0.0064 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.361 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 29 HGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57999999999999999999998543
No 480
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.67 E-value=0.0059 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999999864
No 481
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.67 E-value=0.007 Score=48.70 Aligned_cols=23 Identities=30% Similarity=0.203 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46799999999999999999864
No 482
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.67 E-value=0.0065 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 51 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGK 51 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999853
No 483
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0065 Score=56.36 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~v~iiG~nGsGKSTLl~~L~G 55 (305)
T PRK13651 32 QGEFIAIIGQTGSGKTTFIEHLNA 55 (305)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 579999999999999999999984
No 484
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.0066 Score=54.22 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|+-.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14249 29 ERQITAIIGPSGCGKSTLLRALNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999999998644
No 485
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.66 E-value=0.0066 Score=54.85 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 35 KNQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 579999999999999999999984
No 486
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.66 E-value=0.007 Score=58.34 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=29.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLV 128 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li 128 (277)
+..|+|+|+.|+||||.+..||..+- ..++++|...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 47899999999999999999997663 3367888653
No 487
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.66 E-value=0.0067 Score=52.81 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=21.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+..++|+|++||||||+.+.++-
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 57899999999999999999974
No 488
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0056 Score=59.18 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=29.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
|...+|+|.||+|||||-+|+-||+-|+.+|.
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfa 255 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFA 255 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeE
Confidence 67899999999999999999999999998875
No 489
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.66 E-value=0.0066 Score=60.26 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=25.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+..++|+|++|+||||+|+.+|+.++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3578999999999999999999998754
No 490
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=95.65 E-value=0.0067 Score=55.04 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 50 ~Ge~~~I~G~nGsGKSTLl~~laGl 74 (272)
T PRK14236 50 KNRVTAFIGPSGCGKSTLLRCFNRM 74 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999999854
No 491
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.65 E-value=0.0065 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 27 PGEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999854
No 492
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.0067 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|.+||||||+++.|+..+
T Consensus 40 ~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 40 RGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 57999999999999999999998643
No 493
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.0074 Score=57.68 Aligned_cols=36 Identities=25% Similarity=0.193 Sum_probs=28.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh----h---hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL----R---YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L----g---~~~iD~D~l 127 (277)
++.+|+|+|++|+||||++..|+..+ | ..++..|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 57899999999999999999999754 2 234666665
No 494
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.64 E-value=0.0065 Score=55.36 Aligned_cols=26 Identities=42% Similarity=0.391 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998543
No 495
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.63 E-value=0.007 Score=52.31 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..+.|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999999753
No 496
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.62 E-value=0.007 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 25 TGSLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6799999999999999999999853
No 497
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.006 Score=57.69 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=33.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC--cchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~--D~li~~~~g 133 (277)
++..|.|.||||+|||-+|+++|++.|..|++. ..+..+.+|
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 456799999999999999999999999998754 344545444
No 498
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=95.61 E-value=0.016 Score=54.02 Aligned_cols=103 Identities=20% Similarity=0.204 Sum_probs=61.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHh--hhhhhhhhhHHHHHHHHHhh--hcCcEEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAF--RESDEKGYQQAETEVLKQLS--SMGRLVVC 169 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~--~~~g~~~fr~~e~~vl~~l~--~~~~~VIa 169 (277)
..+++.|+.|+|||.+...|++. |+.++|.....+- .| .....+- .+.-...| |..+...+. .....|+.
T Consensus 128 ~~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~h-rG-s~fG~~~~~~qpsq~~f---e~~L~~~l~~~~~~~~i~~ 201 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA-GAQVLDLEGLANH-RG-SSFGALGLGPQPSQKRF---ENALAEALRRLDPGRPIFV 201 (311)
T ss_pred ceeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHHh-cC-cccCCCCCCCCCchHHH---HHHHHHHHHhCCCCceEEE
Confidence 44668999999999999999875 7888998876532 23 1000000 01112445 333333332 22233333
Q ss_pred ecC----Cccccch-hhHHhhcccEEEEecCCcceecc
Q 023776 170 AGN----GAVQSSA-NLALLRHGISLWIDVPPGMVARM 202 (277)
Q Consensus 170 ~g~----g~v~~~~-~~~~L~~~~vV~L~~~~e~l~~R 202 (277)
.+. |.+.-++ -++.|+.+.+|+|++|.|.+++|
T Consensus 202 e~es~~ig~~~~p~~l~~~m~~~~~i~i~~~~e~Rv~~ 239 (311)
T TIGR03167 202 EDESRRIGRVALPDALFEAMRAAPLVELEASLEERVER 239 (311)
T ss_pred EeCchhhccccCCHHHHHHHhhCCEEEEECCHHHHHHH
Confidence 322 1222233 56677788999999999999998
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.60 E-value=0.0092 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.208 Sum_probs=23.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+.|.|+|.+||||||+.+.|...|.-
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~ 27 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSA 27 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999987753
No 500
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=95.60 E-value=0.0076 Score=48.07 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=25.2
Q ss_pred EEEeeccchHHhhhhHHHHhhh---hh--hhccCcc
Q 023776 96 VFLVGMNNAIKTHLGKFLADAL---RY--YYFDSDS 126 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~L---g~--~~iD~D~ 126 (277)
|+++|.+|+||||++..|+..+ |. .++|+|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 8899999999999999998876 33 3467764
Done!