Query 023776
Match_columns 277
No_of_seqs 216 out of 1640
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:37:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nwj_A ATSK2; P loop, shikimat 100.0 2.2E-30 7.6E-35 231.9 10.4 191 78-268 33-242 (250)
2 3vaa_A Shikimate kinase, SK; s 99.9 3.6E-26 1.2E-30 196.0 9.6 160 92-264 24-197 (199)
3 3trf_A Shikimate kinase, SK; a 99.9 4.7E-26 1.6E-30 191.8 7.2 160 93-265 5-177 (185)
4 1zuh_A Shikimate kinase; alpha 99.9 5.8E-24 2E-28 176.7 8.3 151 92-260 6-167 (168)
5 2iyv_A Shikimate kinase, SK; t 99.9 6.7E-24 2.3E-28 178.6 7.0 156 93-261 2-167 (184)
6 1via_A Shikimate kinase; struc 99.9 4E-23 1.4E-27 173.0 9.7 152 94-262 5-166 (175)
7 1kag_A SKI, shikimate kinase I 99.9 5.1E-23 1.7E-27 171.2 8.6 157 93-262 4-172 (173)
8 1e6c_A Shikimate kinase; phosp 99.9 1.1E-22 3.6E-27 169.0 7.0 154 94-261 3-169 (173)
9 2pt5_A Shikimate kinase, SK; a 99.9 1.9E-22 6.6E-27 166.9 7.3 154 94-261 1-162 (168)
10 3fdi_A Uncharacterized protein 99.8 4.8E-19 1.6E-23 153.0 5.9 153 92-262 5-198 (201)
11 3hdt_A Putative kinase; struct 99.7 1.1E-18 3.8E-23 153.4 5.7 152 93-262 14-218 (223)
12 1knq_A Gluconate kinase; ALFA/ 99.7 3.6E-17 1.2E-21 136.2 9.1 149 92-261 7-172 (175)
13 1y63_A LMAJ004144AAA protein; 99.7 3.1E-18 1.1E-22 144.8 2.3 151 92-263 9-178 (184)
14 3lw7_A Adenylate kinase relate 99.7 2.7E-17 9.4E-22 134.9 7.1 152 94-264 2-178 (179)
15 1qhx_A CPT, protein (chloramph 99.7 1.2E-17 4E-22 139.2 3.4 154 92-260 2-176 (178)
16 3iij_A Coilin-interacting nucl 99.7 2.8E-17 9.7E-22 137.6 4.9 145 92-264 10-175 (180)
17 1jjv_A Dephospho-COA kinase; P 99.7 1.7E-16 5.7E-21 135.7 9.4 154 94-265 3-199 (206)
18 4eun_A Thermoresistant glucoki 99.7 3.3E-16 1.1E-20 133.8 9.9 155 92-262 28-193 (200)
19 2h92_A Cytidylate kinase; ross 99.6 9.4E-18 3.2E-22 144.6 -0.3 157 92-261 2-216 (219)
20 4i1u_A Dephospho-COA kinase; s 99.6 1.6E-16 5.6E-21 138.4 6.8 157 93-266 9-205 (210)
21 2vli_A Antibiotic resistance p 99.6 2.9E-16 9.8E-21 131.1 7.6 151 92-263 4-172 (183)
22 1qf9_A UMP/CMP kinase, protein 99.6 2.2E-16 7.6E-21 132.2 6.7 154 93-262 6-191 (194)
23 3cm0_A Adenylate kinase; ATP-b 99.6 1.5E-16 5.1E-21 133.4 5.6 151 92-260 3-184 (186)
24 2if2_A Dephospho-COA kinase; a 99.6 1E-16 3.6E-21 136.6 4.2 154 94-264 2-193 (204)
25 3kb2_A SPBC2 prophage-derived 99.6 8.4E-16 2.9E-20 126.6 9.5 143 94-265 2-169 (173)
26 1vht_A Dephospho-COA kinase; s 99.6 3.4E-16 1.2E-20 135.0 7.1 155 93-265 4-197 (218)
27 2c95_A Adenylate kinase 1; tra 99.6 2.1E-16 7.3E-21 133.1 5.7 156 92-263 8-194 (196)
28 1zak_A Adenylate kinase; ATP:A 99.6 7.7E-16 2.6E-20 133.3 9.2 161 92-270 4-218 (222)
29 2cdn_A Adenylate kinase; phosp 99.6 2.1E-16 7.3E-21 134.7 4.9 155 91-261 18-200 (201)
30 3t61_A Gluconokinase; PSI-biol 99.6 5.2E-16 1.8E-20 132.4 7.3 151 93-264 18-181 (202)
31 2bwj_A Adenylate kinase 5; pho 99.6 8.6E-16 2.9E-20 129.7 7.6 156 92-263 11-197 (199)
32 3be4_A Adenylate kinase; malar 99.6 2E-16 6.7E-21 137.1 3.7 107 92-202 4-128 (217)
33 2grj_A Dephospho-COA kinase; T 99.6 7.4E-16 2.5E-20 132.2 7.0 152 87-263 6-187 (192)
34 2rhm_A Putative kinase; P-loop 99.6 8.3E-17 2.8E-21 135.3 -0.5 154 92-264 4-186 (193)
35 1uj2_A Uridine-cytidine kinase 99.6 1.3E-15 4.4E-20 134.9 6.7 157 92-264 21-235 (252)
36 1tev_A UMP-CMP kinase; ploop, 99.6 3.8E-15 1.3E-19 124.8 8.5 155 92-262 2-194 (196)
37 1uf9_A TT1252 protein; P-loop, 99.6 4.4E-16 1.5E-20 131.9 2.5 154 92-265 7-196 (203)
38 3a4m_A L-seryl-tRNA(SEC) kinas 99.6 6.6E-15 2.3E-19 131.2 10.1 149 92-261 3-172 (260)
39 3cr8_A Sulfate adenylyltranfer 99.6 4.5E-15 1.5E-19 146.1 9.8 155 92-262 368-539 (552)
40 3ake_A Cytidylate kinase; CMP 99.6 4.3E-16 1.5E-20 132.5 1.1 147 94-261 3-207 (208)
41 1q3t_A Cytidylate kinase; nucl 99.6 2.2E-16 7.6E-21 138.4 -1.1 158 91-262 14-234 (236)
42 2pbr_A DTMP kinase, thymidylat 99.5 1E-14 3.4E-19 122.3 8.6 154 94-263 1-192 (195)
43 1aky_A Adenylate kinase; ATP:A 99.5 1.7E-15 5.9E-20 130.9 4.0 108 92-202 3-128 (220)
44 4e22_A Cytidylate kinase; P-lo 99.5 1.8E-15 6E-20 134.5 4.0 157 92-264 26-246 (252)
45 1m7g_A Adenylylsulfate kinase; 99.5 3.7E-15 1.3E-19 128.3 4.1 154 91-262 23-202 (211)
46 1ak2_A Adenylate kinase isoenz 99.5 2.2E-14 7.6E-19 125.4 8.4 107 92-202 15-139 (233)
47 1ukz_A Uridylate kinase; trans 99.5 7.8E-15 2.7E-19 124.8 5.3 155 92-262 14-201 (203)
48 1zd8_A GTP:AMP phosphotransfer 99.5 8.9E-15 3.1E-19 127.1 5.3 110 92-202 6-124 (227)
49 1kht_A Adenylate kinase; phosp 99.5 3.5E-14 1.2E-18 118.7 8.7 155 92-260 2-191 (192)
50 2f6r_A COA synthase, bifunctio 99.5 3.8E-14 1.3E-18 128.0 9.0 156 93-265 75-271 (281)
51 1ly1_A Polynucleotide kinase; 99.5 2.9E-14 9.9E-19 118.1 6.5 153 93-262 2-172 (181)
52 2yvu_A Probable adenylyl-sulfa 99.5 9.6E-15 3.3E-19 122.9 2.4 154 92-263 12-184 (186)
53 3umf_A Adenylate kinase; rossm 99.5 7.5E-14 2.5E-18 122.1 8.2 156 92-263 28-214 (217)
54 3fb4_A Adenylate kinase; psych 99.5 5.1E-14 1.8E-18 120.8 6.4 109 94-205 1-127 (216)
55 3dl0_A Adenylate kinase; phosp 99.5 9.3E-14 3.2E-18 119.4 7.9 109 94-205 1-127 (216)
56 1cke_A CK, MSSA, protein (cyti 99.5 1.2E-14 4.1E-19 125.4 2.3 38 93-130 5-42 (227)
57 2v54_A DTMP kinase, thymidylat 99.4 2.4E-13 8.3E-18 115.1 9.6 154 92-265 3-193 (204)
58 1nn5_A Similar to deoxythymidy 99.4 5.8E-13 2E-17 113.5 11.2 161 92-266 8-204 (215)
59 2jaq_A Deoxyguanosine kinase; 99.4 1.2E-13 4.1E-18 116.6 6.8 66 186-264 125-202 (205)
60 1nks_A Adenylate kinase; therm 99.4 3.3E-13 1.1E-17 112.7 9.5 153 94-260 2-193 (194)
61 1x6v_B Bifunctional 3'-phospho 99.4 7.5E-14 2.6E-18 139.0 5.5 154 91-262 50-222 (630)
62 3uie_A Adenylyl-sulfate kinase 99.4 3.2E-14 1.1E-18 121.4 1.8 153 92-263 24-195 (200)
63 1m8p_A Sulfate adenylyltransfe 99.4 5.7E-14 1.9E-18 138.9 3.4 155 92-262 395-566 (573)
64 2wwf_A Thymidilate kinase, put 99.4 7.5E-13 2.6E-17 112.7 10.0 159 92-263 9-200 (212)
65 2z0h_A DTMP kinase, thymidylat 99.4 2.2E-13 7.6E-18 114.6 6.2 157 94-264 1-193 (197)
66 2xb4_A Adenylate kinase; ATP-b 99.4 1.8E-13 6.2E-18 119.0 5.7 109 94-205 1-126 (223)
67 3tlx_A Adenylate kinase 2; str 99.4 3.7E-13 1.3E-17 118.8 7.2 108 92-202 28-152 (243)
68 2pez_A Bifunctional 3'-phospho 99.4 1.4E-13 4.7E-18 115.1 3.8 152 92-262 4-175 (179)
69 3r20_A Cytidylate kinase; stru 99.4 1E-12 3.4E-17 116.1 8.6 153 92-263 8-228 (233)
70 1e4v_A Adenylate kinase; trans 99.4 7.6E-13 2.6E-17 113.9 7.5 105 94-202 1-119 (214)
71 3sr0_A Adenylate kinase; phosp 99.4 6.3E-13 2.2E-17 115.2 6.8 106 94-202 1-120 (206)
72 2plr_A DTMP kinase, probable t 99.3 9.9E-12 3.4E-16 105.3 11.8 156 92-265 3-210 (213)
73 2qor_A Guanylate kinase; phosp 99.3 1.3E-12 4.3E-17 111.8 5.2 151 91-263 10-197 (204)
74 2gks_A Bifunctional SAT/APS ki 99.3 1.7E-12 5.9E-17 127.6 6.5 151 93-262 372-540 (546)
75 3gmt_A Adenylate kinase; ssgci 99.3 1.5E-12 5.2E-17 114.7 5.4 107 92-202 7-127 (230)
76 2bdt_A BH3686; alpha-beta prot 99.3 4.7E-12 1.6E-16 106.4 7.3 151 93-257 2-168 (189)
77 3a8t_A Adenylate isopentenyltr 99.2 1.3E-12 4.5E-17 121.1 2.1 113 92-205 39-194 (339)
78 2qt1_A Nicotinamide riboside k 99.2 6E-12 2.1E-16 107.4 4.9 154 92-262 20-205 (207)
79 4eaq_A DTMP kinase, thymidylat 99.2 4.1E-11 1.4E-15 105.0 10.3 160 92-265 25-227 (229)
80 2p5t_B PEZT; postsegregational 99.2 7.1E-12 2.4E-16 111.0 4.4 107 91-202 30-153 (253)
81 1zp6_A Hypothetical protein AT 99.2 3.9E-11 1.3E-15 100.5 8.3 156 91-262 7-175 (191)
82 1ltq_A Polynucleotide kinase; 99.1 4.2E-11 1.4E-15 107.7 5.8 123 93-219 2-143 (301)
83 2axn_A 6-phosphofructo-2-kinas 99.1 7.4E-11 2.5E-15 115.3 7.0 63 92-154 34-101 (520)
84 3v9p_A DTMP kinase, thymidylat 99.1 9.6E-10 3.3E-14 96.5 13.5 158 92-262 24-226 (227)
85 3ld9_A DTMP kinase, thymidylat 99.1 9.5E-10 3.2E-14 96.4 13.2 161 92-267 20-220 (223)
86 3lv8_A DTMP kinase, thymidylat 99.0 1.3E-09 4.4E-14 96.2 11.4 160 92-265 26-231 (236)
87 4edh_A DTMP kinase, thymidylat 99.0 2.5E-09 8.5E-14 92.8 12.3 161 91-265 4-209 (213)
88 1p5z_B DCK, deoxycytidine kina 99.0 4.4E-10 1.5E-14 99.7 7.6 32 92-123 23-55 (263)
89 4hlc_A DTMP kinase, thymidylat 99.0 1.6E-09 5.3E-14 93.5 9.5 155 93-265 2-203 (205)
90 2ze6_A Isopentenyl transferase 99.0 1.7E-10 5.8E-15 102.4 3.1 105 94-202 2-134 (253)
91 3zvl_A Bifunctional polynucleo 99.0 4.9E-10 1.7E-14 106.4 6.0 122 92-232 257-394 (416)
92 4tmk_A Protein (thymidylate ki 99.0 2.8E-09 9.7E-14 92.6 10.2 160 92-265 2-209 (213)
93 1bif_A 6-phosphofructo-2-kinas 98.9 2.9E-10 9.8E-15 109.5 3.6 66 92-157 38-108 (469)
94 3asz_A Uridine kinase; cytidin 98.9 4.7E-09 1.6E-13 89.3 10.5 38 92-129 5-44 (211)
95 3tau_A Guanylate kinase, GMP k 98.9 1.2E-09 4E-14 93.8 6.6 63 187-263 121-189 (208)
96 2bbw_A Adenylate kinase 4, AK4 98.9 1.3E-09 4.5E-14 95.5 6.5 39 92-130 26-64 (246)
97 1gvn_B Zeta; postsegregational 98.9 2.5E-09 8.7E-14 96.6 8.2 112 91-202 31-158 (287)
98 1g8f_A Sulfate adenylyltransfe 98.9 2.7E-09 9.2E-14 104.0 8.0 105 92-262 394-505 (511)
99 2jeo_A Uridine-cytidine kinase 98.9 4.9E-09 1.7E-13 92.0 8.9 29 92-120 24-52 (245)
100 3tmk_A Thymidylate kinase; pho 98.9 3.1E-08 1.1E-12 86.2 13.2 158 92-265 4-205 (216)
101 3tr0_A Guanylate kinase, GMP k 98.8 3.3E-09 1.1E-13 89.5 6.4 61 188-262 120-186 (205)
102 1a7j_A Phosphoribulokinase; tr 98.8 2.5E-09 8.5E-14 96.9 5.4 38 92-129 4-46 (290)
103 2j41_A Guanylate kinase; GMP, 98.8 1.1E-08 3.9E-13 86.1 7.8 26 92-117 5-30 (207)
104 3hjn_A DTMP kinase, thymidylat 98.8 1.8E-08 6E-13 86.3 8.8 154 94-263 1-192 (197)
105 3crm_A TRNA delta(2)-isopenten 98.8 2.6E-09 9E-14 98.4 3.6 80 93-174 5-104 (323)
106 2vp4_A Deoxynucleoside kinase; 98.8 8E-09 2.7E-13 89.8 6.4 66 186-264 147-226 (230)
107 1kgd_A CASK, peripheral plasma 98.8 1.2E-08 4E-13 85.4 6.8 27 91-117 3-29 (180)
108 2ga8_A Hypothetical 39.9 kDa p 98.7 3.1E-09 1.1E-13 99.1 3.3 62 94-157 25-106 (359)
109 3d3q_A TRNA delta(2)-isopenten 98.7 7.8E-09 2.7E-13 95.9 4.4 100 94-197 8-126 (340)
110 3c8u_A Fructokinase; YP_612366 98.7 3E-08 1E-12 84.7 7.7 28 91-118 20-47 (208)
111 2ocp_A DGK, deoxyguanosine kin 98.7 1.4E-07 4.9E-12 82.2 11.7 29 92-120 1-30 (241)
112 1rz3_A Hypothetical protein rb 98.7 4.5E-08 1.5E-12 83.3 7.8 26 92-117 21-46 (201)
113 3a00_A Guanylate kinase, GMP k 98.6 2.7E-08 9.4E-13 83.5 4.3 26 93-118 1-26 (186)
114 1sq5_A Pantothenate kinase; P- 98.5 1.6E-07 5.3E-12 85.5 7.1 36 92-127 79-121 (308)
115 3lnc_A Guanylate kinase, GMP k 98.5 1.8E-07 6.3E-12 80.9 6.1 26 92-117 26-52 (231)
116 1gtv_A TMK, thymidylate kinase 98.5 2E-08 6.9E-13 85.2 -0.0 26 94-119 1-26 (214)
117 1dek_A Deoxynucleoside monopho 98.4 2.3E-08 7.8E-13 88.6 0.1 35 94-128 2-36 (241)
118 3ch4_B Pmkase, phosphomevalona 98.2 3.7E-06 1.3E-10 72.4 7.2 38 92-129 10-50 (202)
119 3aez_A Pantothenate kinase; tr 98.1 2.9E-06 1E-10 77.5 6.5 28 91-118 88-115 (312)
120 1ex7_A Guanylate kinase; subst 98.1 2.9E-06 1E-10 72.0 6.0 24 94-117 2-25 (186)
121 3exa_A TRNA delta(2)-isopenten 98.1 2.5E-06 8.7E-11 78.3 5.4 36 92-127 2-37 (322)
122 3ney_A 55 kDa erythrocyte memb 98.0 4.7E-06 1.6E-10 71.4 5.3 31 88-118 14-44 (197)
123 3foz_A TRNA delta(2)-isopenten 98.0 4E-06 1.4E-10 76.8 5.0 36 92-127 9-44 (316)
124 3tqc_A Pantothenate kinase; bi 98.0 4.5E-06 1.5E-10 76.7 4.8 26 93-118 92-117 (321)
125 3eph_A TRNA isopentenyltransfe 97.9 7.7E-06 2.6E-10 77.4 5.7 80 93-172 2-99 (409)
126 3t15_A Ribulose bisphosphate c 97.4 3.7E-05 1.3E-09 69.1 2.0 32 92-123 35-66 (293)
127 1lv7_A FTSH; alpha/beta domain 97.3 6.4E-05 2.2E-09 65.6 2.0 37 93-129 45-83 (257)
128 2qgz_A Helicase loader, putati 97.3 4.3E-05 1.5E-09 69.4 0.5 76 43-118 93-177 (308)
129 3hws_A ATP-dependent CLP prote 97.3 6.3E-05 2.1E-09 69.3 1.5 34 92-125 50-83 (363)
130 2qz4_A Paraplegin; AAA+, SPG7, 97.3 9.2E-05 3.2E-09 64.1 2.3 31 92-122 38-68 (262)
131 3syl_A Protein CBBX; photosynt 97.2 0.00011 3.9E-09 65.3 2.7 28 92-119 66-93 (309)
132 1g41_A Heat shock protein HSLU 97.2 7.6E-05 2.6E-09 71.4 1.6 35 91-125 48-82 (444)
133 4b4t_M 26S protease regulatory 97.2 9.4E-05 3.2E-09 70.6 2.2 42 92-133 214-257 (434)
134 2kjq_A DNAA-related protein; s 97.2 0.0001 3.4E-09 59.9 2.1 26 92-117 35-60 (149)
135 4b4t_K 26S protease regulatory 97.2 9.3E-05 3.2E-09 70.5 2.0 42 92-133 205-248 (428)
136 4b4t_J 26S protease regulatory 97.2 0.00013 4.5E-09 68.9 2.9 42 92-133 181-224 (405)
137 3cf0_A Transitional endoplasmi 97.2 9.7E-05 3.3E-09 66.4 1.8 32 92-123 48-79 (301)
138 3h4m_A Proteasome-activating n 97.2 0.00011 3.7E-09 64.8 2.1 32 92-123 50-81 (285)
139 3b9p_A CG5977-PA, isoform A; A 97.2 9.3E-05 3.2E-09 65.7 1.6 31 92-122 53-83 (297)
140 4b4t_L 26S protease subunit RP 97.2 0.0001 3.5E-09 70.4 1.7 42 92-133 214-257 (437)
141 4gp7_A Metallophosphoesterase; 97.2 8.2E-05 2.8E-09 61.4 0.9 34 92-127 8-41 (171)
142 2qmh_A HPR kinase/phosphorylas 97.2 0.00012 4.2E-09 62.9 2.0 36 92-128 33-68 (205)
143 3ec2_A DNA replication protein 97.2 0.00014 4.9E-09 59.8 2.4 26 92-117 37-62 (180)
144 2p65_A Hypothetical protein PF 97.2 0.00015 5E-09 58.8 2.4 26 92-117 42-67 (187)
145 1um8_A ATP-dependent CLP prote 97.2 0.0001 3.5E-09 68.0 1.5 34 92-125 71-104 (376)
146 1d2n_A N-ethylmaleimide-sensit 97.1 0.00015 5.1E-09 63.8 2.3 32 92-123 63-94 (272)
147 4b4t_H 26S protease regulatory 97.1 0.00019 6.4E-09 69.0 2.8 42 92-133 242-285 (467)
148 2r62_A Cell division protease 97.1 9.5E-05 3.2E-09 64.7 0.6 32 93-124 44-75 (268)
149 1ofh_A ATP-dependent HSL prote 97.1 0.00014 4.6E-09 64.5 1.6 31 92-122 49-79 (310)
150 1ye8_A Protein THEP1, hypothet 97.1 0.00022 7.5E-09 59.6 2.8 27 94-120 1-27 (178)
151 3eie_A Vacuolar protein sortin 97.1 0.00014 4.9E-09 65.8 1.8 32 92-123 50-81 (322)
152 1lvg_A Guanylate kinase, GMP k 97.1 0.00019 6.4E-09 60.7 2.3 26 92-117 3-28 (198)
153 4b4t_I 26S protease regulatory 97.1 0.0002 6.9E-09 68.2 2.6 42 92-133 215-258 (437)
154 1odf_A YGR205W, hypothetical 3 97.0 0.00026 8.8E-09 63.9 2.9 28 92-119 30-57 (290)
155 1jbk_A CLPB protein; beta barr 97.0 0.00027 9.3E-09 57.1 2.7 27 92-118 42-68 (195)
156 3bos_A Putative DNA replicatio 97.0 0.00032 1.1E-08 59.3 2.8 28 92-119 51-78 (242)
157 2qp9_X Vacuolar protein sortin 96.9 0.00022 7.5E-09 65.8 1.6 31 93-123 84-114 (355)
158 3n70_A Transport activator; si 96.9 0.00022 7.4E-09 57.1 1.3 26 92-117 23-48 (145)
159 1znw_A Guanylate kinase, GMP k 96.9 0.00034 1.2E-08 59.2 2.5 27 91-117 18-44 (207)
160 2x8a_A Nuclear valosin-contain 96.9 0.00021 7.2E-09 63.7 1.2 29 94-122 45-73 (274)
161 1z6g_A Guanylate kinase; struc 96.9 0.00034 1.1E-08 60.0 2.3 26 92-117 22-47 (218)
162 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00025 8.4E-09 64.6 1.4 39 92-130 44-85 (322)
163 3pfi_A Holliday junction ATP-d 96.9 0.00028 9.6E-09 63.7 1.5 32 93-124 55-86 (338)
164 1in4_A RUVB, holliday junction 96.9 0.00035 1.2E-08 63.8 2.1 27 94-120 52-78 (334)
165 1s96_A Guanylate kinase, GMP k 96.8 0.00041 1.4E-08 59.9 2.4 28 91-118 14-41 (219)
166 1ixz_A ATP-dependent metallopr 96.8 0.00031 1E-08 61.0 1.6 29 94-122 50-78 (254)
167 3vfd_A Spastin; ATPase, microt 96.8 0.00033 1.1E-08 65.2 1.8 39 92-130 147-187 (389)
168 2c9o_A RUVB-like 1; hexameric 96.8 0.00032 1.1E-08 66.8 1.7 31 92-122 62-94 (456)
169 3d8b_A Fidgetin-like protein 1 96.8 0.00037 1.3E-08 64.2 2.1 31 92-122 116-146 (357)
170 3co5_A Putative two-component 96.8 0.00026 8.7E-09 56.6 0.3 36 92-127 26-62 (143)
171 1sxj_A Activator 1 95 kDa subu 96.7 0.00044 1.5E-08 66.9 1.9 31 93-123 77-107 (516)
172 2w58_A DNAI, primosome compone 96.7 0.00066 2.3E-08 56.6 2.6 25 94-118 55-79 (202)
173 2v3c_C SRP54, signal recogniti 96.7 2.5E-05 8.7E-10 74.5 -7.0 98 17-127 21-138 (432)
174 2r44_A Uncharacterized protein 96.7 0.00061 2.1E-08 61.5 2.5 30 92-121 45-74 (331)
175 1njg_A DNA polymerase III subu 96.7 0.00073 2.5E-08 56.4 2.6 27 94-120 46-72 (250)
176 1l8q_A Chromosomal replication 96.7 0.00057 1.9E-08 61.6 2.0 35 93-127 37-76 (324)
177 4a74_A DNA repair and recombin 96.7 0.00074 2.5E-08 57.0 2.6 25 91-115 23-47 (231)
178 2ehv_A Hypothetical protein PH 96.6 0.00068 2.3E-08 58.0 2.3 25 91-115 28-52 (251)
179 1iy2_A ATP-dependent metallopr 96.6 0.00047 1.6E-08 60.9 1.3 28 95-122 75-102 (278)
180 1htw_A HI0065; nucleotide-bind 96.6 0.00083 2.8E-08 55.1 2.7 26 92-117 32-57 (158)
181 3te6_A Regulatory protein SIR3 96.6 0.001 3.5E-08 60.9 3.4 27 92-118 44-70 (318)
182 3uk6_A RUVB-like 2; hexameric 96.6 0.0008 2.7E-08 61.3 2.6 28 92-119 69-96 (368)
183 2chg_A Replication factor C sm 96.6 0.00088 3E-08 55.4 2.6 25 94-118 39-63 (226)
184 2f1r_A Molybdopterin-guanine d 96.6 0.0011 3.7E-08 55.1 3.1 25 94-118 3-27 (171)
185 1svm_A Large T antigen; AAA+ f 96.6 0.00074 2.5E-08 63.2 2.2 32 92-123 168-199 (377)
186 2zan_A Vacuolar protein sortin 96.6 0.00061 2.1E-08 64.8 1.6 39 92-130 166-207 (444)
187 2ce7_A Cell division protein F 96.6 0.00075 2.5E-08 65.1 2.2 31 93-123 49-79 (476)
188 4fcw_A Chaperone protein CLPB; 96.6 0.00087 3E-08 59.5 2.5 25 94-118 48-72 (311)
189 3cf2_A TER ATPase, transitiona 96.6 0.00056 1.9E-08 69.9 1.3 42 92-133 237-280 (806)
190 1tue_A Replication protein E1; 96.6 0.0011 3.8E-08 57.2 3.0 30 93-122 58-87 (212)
191 1hqc_A RUVB; extended AAA-ATPa 96.5 0.00059 2E-08 60.9 1.3 30 93-122 38-67 (324)
192 2v1u_A Cell division control p 96.5 0.00061 2.1E-08 61.8 1.2 26 92-117 43-68 (387)
193 3tif_A Uncharacterized ABC tra 96.5 0.0008 2.7E-08 58.6 1.8 24 92-115 30-53 (235)
194 3m6a_A ATP-dependent protease 96.5 0.00084 2.9E-08 65.6 2.0 32 91-122 106-137 (543)
195 2pcj_A ABC transporter, lipopr 96.5 0.0009 3.1E-08 57.8 1.9 24 92-115 29-52 (224)
196 3pxg_A Negative regulator of g 96.5 0.0011 3.6E-08 63.5 2.5 26 92-117 200-225 (468)
197 2qby_B CDC6 homolog 3, cell di 96.4 0.00091 3.1E-08 61.0 1.9 25 93-117 45-69 (384)
198 2i3b_A HCR-ntpase, human cance 96.4 0.0011 3.9E-08 55.8 2.3 25 93-117 1-25 (189)
199 2v9p_A Replication protein E1; 96.4 0.0012 4.1E-08 60.0 2.6 26 92-117 125-150 (305)
200 3tqf_A HPR(Ser) kinase; transf 96.4 0.001 3.5E-08 55.9 1.9 39 91-130 14-52 (181)
201 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0013 4.6E-08 55.2 2.7 27 91-117 21-47 (235)
202 1p6x_A Thymidine kinase; P-loo 96.4 0.0011 3.8E-08 61.1 2.2 28 92-119 6-33 (334)
203 2qby_A CDC6 homolog 1, cell di 96.4 0.0011 3.8E-08 59.9 2.1 26 92-117 44-69 (386)
204 3pvs_A Replication-associated 96.4 0.0011 3.7E-08 63.3 2.0 30 94-123 51-80 (447)
205 2eyu_A Twitching motility prot 96.4 0.0016 5.3E-08 57.7 2.9 28 91-118 23-50 (261)
206 2cbz_A Multidrug resistance-as 96.4 0.0011 3.8E-08 57.8 1.8 25 92-116 30-54 (237)
207 3hu3_A Transitional endoplasmi 96.3 0.00099 3.4E-08 64.3 1.4 41 92-132 237-279 (489)
208 3b85_A Phosphate starvation-in 96.3 0.0011 3.8E-08 56.7 1.6 25 91-115 20-44 (208)
209 4g1u_C Hemin import ATP-bindin 96.3 0.0012 4.1E-08 58.6 1.8 24 92-115 36-59 (266)
210 2cvh_A DNA repair and recombin 96.3 0.0017 5.8E-08 54.4 2.5 37 90-126 17-55 (220)
211 2d2e_A SUFC protein; ABC-ATPas 96.3 0.0015 5.2E-08 57.3 2.3 25 92-116 28-52 (250)
212 3gfo_A Cobalt import ATP-bindi 96.3 0.0012 4.2E-08 59.0 1.8 24 92-115 33-56 (275)
213 1mv5_A LMRA, multidrug resista 96.3 0.0013 4.6E-08 57.4 1.9 25 92-116 27-51 (243)
214 1xjc_A MOBB protein homolog; s 96.3 0.0019 6.4E-08 53.8 2.7 26 93-118 4-29 (169)
215 1b0u_A Histidine permease; ABC 96.3 0.0013 4.4E-08 58.3 1.8 25 92-116 31-55 (262)
216 2ff7_A Alpha-hemolysin translo 96.3 0.0013 4.4E-08 57.7 1.8 25 92-116 34-58 (247)
217 1ji0_A ABC transporter; ATP bi 96.3 0.0013 4.6E-08 57.3 1.8 24 92-115 31-54 (240)
218 1rj9_A FTSY, signal recognitio 96.3 0.0018 6.1E-08 58.7 2.7 26 92-117 101-126 (304)
219 1g6h_A High-affinity branched- 96.2 0.0014 4.7E-08 57.8 1.8 24 92-115 32-55 (257)
220 3u61_B DNA polymerase accessor 96.2 0.0011 3.8E-08 59.4 1.2 30 94-123 49-78 (324)
221 2pze_A Cystic fibrosis transme 96.2 0.0015 5E-08 56.7 1.8 25 92-116 33-57 (229)
222 1sgw_A Putative ABC transporte 96.2 0.0014 4.7E-08 56.5 1.6 24 92-115 34-57 (214)
223 1ypw_A Transitional endoplasmi 96.2 0.0011 3.8E-08 67.7 1.2 32 92-123 237-268 (806)
224 3b9q_A Chloroplast SRP recepto 96.2 0.0021 7.1E-08 58.2 2.8 26 92-117 99-124 (302)
225 2zu0_C Probable ATP-dependent 96.2 0.0018 6.2E-08 57.5 2.3 25 92-116 45-69 (267)
226 1g8p_A Magnesium-chelatase 38 96.2 0.0016 5.5E-08 58.6 2.0 26 93-118 45-70 (350)
227 2ixe_A Antigen peptide transpo 96.2 0.0015 5.2E-08 58.1 1.8 25 92-116 44-68 (271)
228 2olj_A Amino acid ABC transpor 96.2 0.0015 5.2E-08 57.9 1.8 25 92-116 49-73 (263)
229 2ghi_A Transport protein; mult 96.2 0.0016 5.3E-08 57.6 1.8 25 92-116 45-69 (260)
230 1sxj_D Activator 1 41 kDa subu 96.2 0.002 7E-08 57.9 2.6 26 94-119 59-84 (353)
231 1lw7_A Transcriptional regulat 96.2 0.0023 8E-08 58.9 3.0 26 93-118 170-195 (365)
232 3pxi_A Negative regulator of g 96.1 0.0019 6.7E-08 65.2 2.5 26 92-117 200-225 (758)
233 1vpl_A ABC transporter, ATP-bi 96.1 0.0017 5.8E-08 57.4 1.8 25 92-116 40-64 (256)
234 1fnn_A CDC6P, cell division co 96.1 0.0015 5.2E-08 59.4 1.6 23 95-117 46-68 (389)
235 3nh6_A ATP-binding cassette SU 96.1 0.002 6.9E-08 58.5 2.4 25 92-116 79-103 (306)
236 2orw_A Thymidine kinase; TMTK, 96.1 0.0026 8.9E-08 53.2 2.8 26 92-117 2-27 (184)
237 1vma_A Cell division protein F 96.1 0.0024 8.3E-08 57.9 2.8 26 92-117 103-128 (306)
238 2qi9_C Vitamin B12 import ATP- 96.1 0.0018 6E-08 57.1 1.8 25 92-116 25-49 (249)
239 3e70_C DPA, signal recognition 96.1 0.0025 8.4E-08 58.5 2.8 26 92-117 128-153 (328)
240 1n0w_A DNA repair protein RAD5 96.1 0.0021 7.4E-08 54.6 2.3 25 91-115 22-46 (243)
241 2yz2_A Putative ABC transporte 96.1 0.0018 6.2E-08 57.4 1.8 24 92-115 32-55 (266)
242 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0016 5.6E-08 63.0 1.6 29 94-122 65-93 (499)
243 2ihy_A ABC transporter, ATP-bi 96.1 0.0019 6.4E-08 57.8 1.8 25 92-116 46-70 (279)
244 2nq2_C Hypothetical ABC transp 96.0 0.002 7E-08 56.7 1.8 25 92-116 30-54 (253)
245 1np6_A Molybdopterin-guanine d 96.0 0.003 1E-07 52.6 2.7 26 93-118 6-31 (174)
246 1e2k_A Thymidine kinase; trans 96.0 0.0016 5.5E-08 59.9 1.1 27 92-118 3-29 (331)
247 1cr0_A DNA primase/helicase; R 96.0 0.003 1E-07 56.1 2.8 36 79-117 24-59 (296)
248 2bjv_A PSP operon transcriptio 96.0 0.0024 8E-08 55.7 2.1 27 92-118 28-54 (265)
249 3d31_A Sulfate/molybdate ABC t 96.0 0.0031 1.1E-07 58.3 2.9 24 92-115 25-48 (348)
250 2onk_A Molybdate/tungstate ABC 96.0 0.0026 8.8E-08 55.6 2.2 23 94-116 25-47 (240)
251 2px0_A Flagellar biosynthesis 95.9 0.0032 1.1E-07 56.7 2.8 36 92-127 104-145 (296)
252 1sxj_E Activator 1 40 kDa subu 95.9 0.0035 1.2E-07 56.6 3.0 23 95-117 38-60 (354)
253 1oxx_K GLCV, glucose, ABC tran 95.9 0.0032 1.1E-07 58.3 2.8 24 92-115 30-53 (353)
254 3fvq_A Fe(3+) IONS import ATP- 95.9 0.0028 9.7E-08 58.9 2.4 24 92-115 29-52 (359)
255 1ypw_A Transitional endoplasmi 95.9 0.0016 5.5E-08 66.5 0.8 39 92-130 510-550 (806)
256 1t9h_A YLOQ, probable GTPase E 95.9 0.0036 1.2E-07 56.9 3.0 31 85-115 165-195 (307)
257 1iqp_A RFCS; clamp loader, ext 95.9 0.0034 1.2E-07 55.6 2.7 25 94-118 47-71 (327)
258 1c9k_A COBU, adenosylcobinamid 95.9 0.002 7E-08 54.2 1.2 31 95-126 1-33 (180)
259 1sxj_C Activator 1 40 kDa subu 95.9 0.003 1E-07 57.2 2.5 23 96-118 49-71 (340)
260 3cf2_A TER ATPase, transitiona 95.9 0.0021 7.1E-08 65.7 1.4 42 92-133 510-553 (806)
261 2og2_A Putative signal recogni 95.9 0.0034 1.2E-07 58.3 2.8 26 92-117 156-181 (359)
262 1of1_A Thymidine kinase; trans 95.9 0.0023 7.8E-08 59.9 1.6 27 92-118 48-74 (376)
263 2chq_A Replication factor C sm 95.9 0.003 1E-07 55.8 2.2 23 95-117 40-62 (319)
264 2z4s_A Chromosomal replication 95.8 0.0028 9.7E-08 60.1 2.0 25 93-117 130-154 (440)
265 2dr3_A UPF0273 protein PH0284; 95.8 0.0041 1.4E-07 52.9 2.8 26 91-116 21-46 (247)
266 3rlf_A Maltose/maltodextrin im 95.8 0.0033 1.1E-07 58.9 2.3 24 92-115 28-51 (381)
267 2gza_A Type IV secretion syste 95.8 0.0029 9.8E-08 58.6 1.8 26 92-117 174-199 (361)
268 1nlf_A Regulatory protein REPA 95.8 0.0036 1.2E-07 55.2 2.4 27 90-116 27-53 (279)
269 2bbs_A Cystic fibrosis transme 95.8 0.0031 1.1E-07 56.8 1.9 25 92-116 63-87 (290)
270 1z47_A CYSA, putative ABC-tran 95.8 0.0035 1.2E-07 58.1 2.3 24 92-115 40-63 (355)
271 2yyz_A Sugar ABC transporter, 95.8 0.0036 1.2E-07 58.2 2.3 24 92-115 28-51 (359)
272 2ewv_A Twitching motility prot 95.7 0.0044 1.5E-07 57.6 2.9 27 92-118 135-161 (372)
273 2it1_A 362AA long hypothetical 95.7 0.0037 1.3E-07 58.1 2.3 24 92-115 28-51 (362)
274 1jr3_A DNA polymerase III subu 95.7 0.0039 1.3E-07 56.5 2.4 26 94-119 39-64 (373)
275 2pjz_A Hypothetical protein ST 95.7 0.0031 1.1E-07 55.9 1.7 24 93-116 30-53 (263)
276 3tui_C Methionine import ATP-b 95.7 0.0038 1.3E-07 58.1 2.3 24 92-115 53-76 (366)
277 1v43_A Sugar-binding transport 95.7 0.004 1.4E-07 58.1 2.3 24 92-115 36-59 (372)
278 2yhs_A FTSY, cell division pro 95.7 0.0046 1.6E-07 59.9 2.8 26 92-117 292-317 (503)
279 1g29_1 MALK, maltose transport 95.7 0.0042 1.4E-07 58.0 2.3 24 92-115 28-51 (372)
280 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0042 1.4E-07 59.5 2.2 26 92-117 137-162 (460)
281 2vhj_A Ntpase P4, P4; non- hyd 95.6 0.0051 1.8E-07 56.5 2.7 36 89-124 119-156 (331)
282 3kta_A Chromosome segregation 95.6 0.0058 2E-07 49.9 2.8 25 94-118 27-51 (182)
283 1osn_A Thymidine kinase, VZV-T 95.6 0.0036 1.2E-07 57.8 1.6 29 91-119 10-39 (341)
284 2qen_A Walker-type ATPase; unk 95.6 0.0036 1.2E-07 55.8 1.6 33 93-125 31-63 (350)
285 3gd7_A Fusion complex of cysti 95.6 0.0047 1.6E-07 58.0 2.4 24 92-115 46-69 (390)
286 3jvv_A Twitching mobility prot 95.6 0.0057 2E-07 56.6 2.9 27 92-118 122-148 (356)
287 3nbx_X ATPase RAVA; AAA+ ATPas 95.5 0.0035 1.2E-07 60.7 1.4 27 92-118 40-66 (500)
288 2b8t_A Thymidine kinase; deoxy 95.5 0.0062 2.1E-07 52.8 2.8 27 92-118 11-37 (223)
289 1r6b_X CLPA protein; AAA+, N-t 95.5 0.0044 1.5E-07 62.4 1.9 28 95-122 490-517 (758)
290 1sxj_B Activator 1 37 kDa subu 95.5 0.0058 2E-07 54.0 2.5 23 95-117 44-66 (323)
291 2yv5_A YJEQ protein; hydrolase 95.4 0.0037 1.3E-07 56.3 1.1 30 85-114 157-186 (302)
292 3sop_A Neuronal-specific septi 95.4 0.006 2.1E-07 54.2 2.3 24 94-117 3-26 (270)
293 1zu4_A FTSY; GTPase, signal re 95.4 0.0069 2.4E-07 55.2 2.8 35 92-126 104-143 (320)
294 2qm8_A GTPase/ATPase; G protei 95.4 0.007 2.4E-07 55.4 2.8 26 92-117 54-79 (337)
295 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.004 1.4E-07 56.9 1.1 26 92-117 170-195 (330)
296 3kl4_A SRP54, signal recogniti 95.4 0.0063 2.1E-07 57.9 2.5 36 92-127 96-136 (433)
297 1qvr_A CLPB protein; coiled co 95.4 0.0044 1.5E-07 63.6 1.5 26 92-117 190-215 (854)
298 1pzn_A RAD51, DNA repair and r 95.3 0.007 2.4E-07 55.7 2.6 27 91-117 129-155 (349)
299 2wsm_A Hydrogenase expression/ 95.3 0.0086 2.9E-07 50.2 2.9 26 92-117 29-54 (221)
300 1pui_A ENGB, probable GTP-bind 95.3 0.0048 1.6E-07 51.2 1.2 25 91-115 24-48 (210)
301 2r2a_A Uncharacterized protein 95.3 0.0074 2.5E-07 51.3 2.3 24 92-115 4-27 (199)
302 1ko7_A HPR kinase/phosphatase; 95.2 0.0065 2.2E-07 55.5 2.0 37 92-129 143-179 (314)
303 2gj8_A MNME, tRNA modification 95.1 0.009 3.1E-07 48.4 2.5 24 92-115 3-26 (172)
304 3k1j_A LON protease, ATP-depen 95.1 0.0067 2.3E-07 59.8 2.0 27 92-118 59-85 (604)
305 1ls1_A Signal recognition part 95.1 0.01 3.6E-07 53.2 3.1 27 92-118 97-123 (295)
306 3dm5_A SRP54, signal recogniti 95.1 0.0091 3.1E-07 57.0 2.8 37 92-128 99-140 (443)
307 1u0j_A DNA replication protein 95.1 0.0079 2.7E-07 53.6 2.2 24 94-117 105-128 (267)
308 2wji_A Ferrous iron transport 95.1 0.0088 3E-07 47.9 2.3 23 93-115 3-25 (165)
309 2ce2_X GTPase HRAS; signaling 95.1 0.01 3.5E-07 46.4 2.5 23 93-115 3-25 (166)
310 1j8m_F SRP54, signal recogniti 95.1 0.0073 2.5E-07 54.4 1.8 35 92-126 97-136 (297)
311 1r6b_X CLPA protein; AAA+, N-t 95.1 0.0083 2.8E-07 60.4 2.4 27 92-118 206-232 (758)
312 3p32_A Probable GTPase RV1496/ 95.0 0.01 3.5E-07 54.5 2.8 26 92-117 78-103 (355)
313 1oix_A RAS-related protein RAB 95.0 0.0094 3.2E-07 49.2 2.3 23 93-115 29-51 (191)
314 2wjg_A FEOB, ferrous iron tran 95.0 0.011 3.6E-07 48.0 2.6 24 92-115 6-29 (188)
315 1p9r_A General secretion pathw 95.0 0.0098 3.3E-07 56.3 2.7 27 92-118 166-192 (418)
316 2www_A Methylmalonic aciduria 95.0 0.011 3.7E-07 54.4 2.8 26 92-117 73-98 (349)
317 2rcn_A Probable GTPase ENGC; Y 95.0 0.0055 1.9E-07 56.9 0.8 25 91-115 213-237 (358)
318 3ozx_A RNAse L inhibitor; ATP 95.0 0.008 2.7E-07 58.7 1.9 25 91-115 23-47 (538)
319 1kao_A RAP2A; GTP-binding prot 95.0 0.011 3.7E-07 46.3 2.4 23 93-115 3-25 (167)
320 3b5x_A Lipid A export ATP-bind 94.9 0.009 3.1E-07 58.6 2.3 25 92-116 368-392 (582)
321 1yrb_A ATP(GTP)binding protein 94.9 0.013 4.6E-07 50.4 3.1 36 91-126 12-51 (262)
322 1m2o_B GTP-binding protein SAR 94.9 0.011 3.6E-07 48.7 2.4 24 92-115 22-45 (190)
323 1yqt_A RNAse L inhibitor; ATP- 94.9 0.0092 3.1E-07 58.2 2.3 25 91-115 45-69 (538)
324 2dyk_A GTP-binding protein; GT 94.9 0.011 3.8E-07 46.3 2.4 23 94-116 2-24 (161)
325 3hr8_A Protein RECA; alpha and 94.9 0.012 4E-07 54.6 2.9 38 89-126 57-99 (356)
326 1xx6_A Thymidine kinase; NESG, 94.9 0.013 4.4E-07 49.5 2.8 26 92-117 7-32 (191)
327 1u0l_A Probable GTPase ENGC; p 94.9 0.0047 1.6E-07 55.5 0.1 26 90-115 166-191 (301)
328 3b60_A Lipid A export ATP-bind 94.9 0.0086 2.9E-07 58.7 1.9 26 92-117 368-393 (582)
329 2hf9_A Probable hydrogenase ni 94.9 0.013 4.6E-07 49.1 2.9 26 92-117 37-62 (226)
330 1u8z_A RAS-related protein RAL 94.9 0.012 4.1E-07 46.1 2.4 23 93-115 4-26 (168)
331 2xxa_A Signal recognition part 94.9 0.013 4.4E-07 55.7 3.0 36 92-127 99-140 (433)
332 2f9l_A RAB11B, member RAS onco 94.8 0.011 3.7E-07 48.9 2.2 22 94-115 6-27 (199)
333 1ojl_A Transcriptional regulat 94.8 0.01 3.5E-07 53.4 2.0 26 92-117 24-49 (304)
334 1w5s_A Origin recognition comp 94.8 0.011 3.7E-07 54.2 2.2 27 92-118 49-77 (412)
335 1a5t_A Delta prime, HOLB; zinc 94.7 0.013 4.4E-07 53.2 2.6 27 94-120 25-51 (334)
336 1knx_A Probable HPR(Ser) kinas 94.7 0.0079 2.7E-07 54.8 1.1 37 91-128 145-181 (312)
337 2oap_1 GSPE-2, type II secreti 94.7 0.01 3.5E-07 57.6 1.9 26 92-117 259-284 (511)
338 3lda_A DNA repair protein RAD5 94.7 0.012 4.2E-07 55.2 2.4 24 91-114 176-199 (400)
339 2p67_A LAO/AO transport system 94.7 0.015 5.1E-07 53.1 2.9 26 92-117 55-80 (341)
340 1z2a_A RAS-related protein RAB 94.7 0.013 4.5E-07 46.1 2.2 23 93-115 5-27 (168)
341 2zts_A Putative uncharacterize 94.6 0.013 4.5E-07 49.7 2.3 27 89-115 26-52 (251)
342 3pxi_A Negative regulator of g 94.6 0.01 3.5E-07 59.9 1.8 23 95-117 523-545 (758)
343 1ek0_A Protein (GTP-binding pr 94.6 0.014 4.8E-07 45.9 2.2 23 93-115 3-25 (170)
344 1c1y_A RAS-related protein RAP 94.6 0.015 5E-07 45.8 2.3 23 93-115 3-25 (167)
345 1qvr_A CLPB protein; coiled co 94.6 0.013 4.5E-07 59.9 2.6 34 94-127 589-627 (854)
346 2yl4_A ATP-binding cassette SU 94.6 0.0091 3.1E-07 58.7 1.3 25 92-116 369-393 (595)
347 2ged_A SR-beta, signal recogni 94.6 0.015 5.3E-07 47.3 2.5 24 92-115 47-70 (193)
348 2lkc_A Translation initiation 94.6 0.016 5.6E-07 46.2 2.5 24 92-115 7-30 (178)
349 2fna_A Conserved hypothetical 94.5 0.015 5.2E-07 51.7 2.6 31 94-124 31-63 (357)
350 2zej_A Dardarin, leucine-rich 94.5 0.011 3.9E-07 48.1 1.6 22 94-115 3-24 (184)
351 1nij_A Hypothetical protein YJ 94.5 0.012 4.2E-07 53.2 1.9 23 93-115 4-26 (318)
352 2dpy_A FLII, flagellum-specifi 94.5 0.016 5.3E-07 55.2 2.7 32 86-117 150-181 (438)
353 2erx_A GTP-binding protein DI- 94.5 0.015 5.2E-07 45.8 2.2 23 93-115 3-25 (172)
354 3qf4_B Uncharacterized ABC tra 94.5 0.01 3.6E-07 58.4 1.4 25 92-116 380-404 (598)
355 2i1q_A DNA repair and recombin 94.5 0.013 4.5E-07 52.7 2.0 27 90-116 95-121 (322)
356 3ozx_A RNAse L inhibitor; ATP 94.5 0.012 4.1E-07 57.4 1.8 24 92-115 293-316 (538)
357 2zr9_A Protein RECA, recombina 94.5 0.017 5.8E-07 53.2 2.7 38 89-126 57-99 (349)
358 1yqt_A RNAse L inhibitor; ATP- 94.5 0.014 4.9E-07 56.8 2.3 25 92-116 311-335 (538)
359 3con_A GTPase NRAS; structural 94.4 0.016 5.5E-07 47.0 2.2 24 92-115 20-43 (190)
360 1tf7_A KAIC; homohexamer, hexa 94.4 0.015 5.3E-07 56.1 2.4 23 91-113 37-59 (525)
361 2obl_A ESCN; ATPase, hydrolase 94.4 0.016 5.6E-07 53.3 2.4 32 86-117 64-95 (347)
362 3tvt_A Disks large 1 tumor sup 94.4 0.037 1.3E-06 49.8 4.7 24 92-118 99-122 (292)
363 2qag_B Septin-6, protein NEDD5 94.4 0.014 4.6E-07 55.5 1.9 24 92-115 39-64 (427)
364 3q72_A GTP-binding protein RAD 94.4 0.017 6E-07 45.5 2.3 21 94-114 3-23 (166)
365 1nrj_B SR-beta, signal recogni 94.4 0.018 6.2E-07 48.0 2.5 25 92-116 11-35 (218)
366 4a82_A Cystic fibrosis transme 94.4 0.0091 3.1E-07 58.5 0.7 25 92-116 366-390 (578)
367 3k53_A Ferrous iron transport 94.3 0.019 6.3E-07 50.4 2.6 23 93-115 3-25 (271)
368 2nzj_A GTP-binding protein REM 94.3 0.018 6E-07 45.8 2.2 23 93-115 4-26 (175)
369 3j16_B RLI1P; ribosome recycli 94.3 0.016 5.5E-07 57.4 2.3 25 91-115 101-125 (608)
370 2fn4_A P23, RAS-related protei 94.3 0.02 6.7E-07 45.6 2.4 25 92-116 8-32 (181)
371 1upt_A ARL1, ADP-ribosylation 94.3 0.021 7.3E-07 45.1 2.6 24 92-115 6-29 (171)
372 1ky3_A GTP-binding protein YPT 94.2 0.02 6.7E-07 45.7 2.3 23 93-115 8-30 (182)
373 1svi_A GTP-binding protein YSX 94.2 0.02 7E-07 46.5 2.5 24 92-115 22-45 (195)
374 3e1s_A Exodeoxyribonuclease V, 94.2 0.019 6.6E-07 56.3 2.7 28 91-118 202-229 (574)
375 2j37_W Signal recognition part 94.2 0.02 6.8E-07 55.5 2.7 34 93-126 101-139 (504)
376 3f9v_A Minichromosome maintena 94.2 0.0084 2.9E-07 59.2 0.1 27 95-121 329-355 (595)
377 1v5w_A DMC1, meiotic recombina 94.2 0.022 7.5E-07 52.1 2.8 27 90-116 119-145 (343)
378 2y8e_A RAB-protein 6, GH09086P 94.2 0.02 6.7E-07 45.6 2.2 24 92-115 13-36 (179)
379 1z0j_A RAB-22, RAS-related pro 94.1 0.02 6.8E-07 45.1 2.2 24 92-115 5-28 (170)
380 3bk7_A ABC transporter ATP-bin 94.1 0.018 6.2E-07 56.9 2.3 24 92-115 381-404 (607)
381 1g16_A RAS-related protein SEC 94.1 0.022 7.6E-07 44.8 2.4 22 94-115 4-25 (170)
382 3bk7_A ABC transporter ATP-bin 94.1 0.016 5.3E-07 57.5 1.8 25 91-115 115-139 (607)
383 3q85_A GTP-binding protein REM 94.1 0.021 7.2E-07 45.1 2.3 22 94-115 3-24 (169)
384 3bh0_A DNAB-like replicative h 94.1 0.025 8.4E-07 51.1 2.9 36 79-117 57-92 (315)
385 3qf4_A ABC transporter, ATP-bi 94.1 0.012 4.2E-07 57.8 1.0 26 92-117 368-393 (587)
386 1wms_A RAB-9, RAB9, RAS-relate 94.1 0.021 7E-07 45.5 2.2 23 93-115 7-29 (177)
387 2ffh_A Protein (FFH); SRP54, s 94.1 0.023 8E-07 53.8 2.8 36 92-127 97-137 (425)
388 1kjw_A Postsynaptic density pr 94.1 0.24 8.1E-06 44.5 9.3 24 92-118 104-127 (295)
389 2hxs_A RAB-26, RAS-related pro 94.0 0.023 8E-07 45.2 2.4 24 92-115 5-28 (178)
390 2z43_A DNA repair and recombin 94.0 0.021 7.2E-07 51.6 2.3 26 91-116 105-130 (324)
391 1z08_A RAS-related protein RAB 94.0 0.022 7.4E-07 45.0 2.1 23 93-115 6-28 (170)
392 3lxx_A GTPase IMAP family memb 94.0 0.021 7.3E-07 48.8 2.2 24 92-115 28-51 (239)
393 1tq4_A IIGP1, interferon-induc 94.0 0.022 7.7E-07 53.7 2.5 23 93-115 69-91 (413)
394 4dsu_A GTPase KRAS, isoform 2B 94.0 0.022 7.5E-07 45.8 2.2 23 93-115 4-26 (189)
395 3pqc_A Probable GTP-binding pr 94.0 0.023 7.8E-07 45.9 2.3 25 92-116 22-46 (195)
396 2a9k_A RAS-related protein RAL 94.0 0.023 7.8E-07 45.5 2.2 24 92-115 17-40 (187)
397 1r2q_A RAS-related protein RAB 94.0 0.023 7.7E-07 44.7 2.2 23 93-115 6-28 (170)
398 1moz_A ARL1, ADP-ribosylation 94.0 0.019 6.6E-07 46.1 1.8 23 92-114 17-39 (183)
399 3clv_A RAB5 protein, putative; 93.9 0.026 9E-07 45.6 2.6 23 93-115 7-29 (208)
400 3tw8_B RAS-related protein RAB 93.9 0.022 7.7E-07 45.3 2.1 23 93-115 9-31 (181)
401 3bc1_A RAS-related protein RAB 93.9 0.023 8E-07 45.7 2.2 23 93-115 11-33 (195)
402 3upu_A ATP-dependent DNA helic 93.9 0.023 8E-07 53.8 2.5 25 94-118 46-70 (459)
403 1u94_A RECA protein, recombina 93.9 0.025 8.6E-07 52.3 2.6 36 89-124 59-99 (356)
404 1tf7_A KAIC; homohexamer, hexa 93.9 0.023 8E-07 54.9 2.5 27 91-117 279-305 (525)
405 3j16_B RLI1P; ribosome recycli 93.8 0.023 7.7E-07 56.3 2.3 24 92-115 377-400 (608)
406 2iwr_A Centaurin gamma 1; ANK 93.8 0.032 1.1E-06 44.6 2.8 24 92-115 6-29 (178)
407 3kkq_A RAS-related protein M-R 93.8 0.027 9.3E-07 45.3 2.3 24 92-115 17-40 (183)
408 2cxx_A Probable GTP-binding pr 93.8 0.027 9.2E-07 45.4 2.3 22 94-115 2-23 (190)
409 1z0f_A RAB14, member RAS oncog 93.8 0.026 8.9E-07 44.8 2.2 23 93-115 15-37 (179)
410 2r6a_A DNAB helicase, replicat 93.7 0.03 1E-06 53.1 2.9 36 79-117 192-227 (454)
411 4a1f_A DNAB helicase, replicat 93.7 0.041 1.4E-06 50.5 3.7 42 73-117 28-70 (338)
412 1m7b_A RND3/RHOE small GTP-bin 93.7 0.03 1E-06 45.4 2.4 23 93-115 7-29 (184)
413 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.028 9.6E-07 45.0 2.2 24 92-115 4-27 (186)
414 1r8s_A ADP-ribosylation factor 93.7 0.03 1E-06 44.0 2.4 21 95-115 2-22 (164)
415 1fzq_A ADP-ribosylation factor 93.7 0.029 1E-06 45.5 2.4 24 92-115 15-38 (181)
416 2bme_A RAB4A, RAS-related prot 93.7 0.028 9.7E-07 45.2 2.3 23 93-115 10-32 (186)
417 4aby_A DNA repair protein RECN 93.6 0.033 1.1E-06 51.6 2.9 26 92-118 60-85 (415)
418 3euj_A Chromosome partition pr 93.6 0.025 8.4E-07 54.6 2.1 23 94-116 30-52 (483)
419 1xp8_A RECA protein, recombina 93.6 0.026 9E-07 52.4 2.2 38 89-126 70-112 (366)
420 3t5g_A GTP-binding protein RHE 93.6 0.028 9.5E-07 45.1 2.1 23 93-115 6-28 (181)
421 2g6b_A RAS-related protein RAB 93.6 0.028 9.7E-07 44.8 2.2 23 93-115 10-32 (180)
422 4dhe_A Probable GTP-binding pr 93.6 0.035 1.2E-06 46.3 2.8 25 92-116 28-52 (223)
423 1ksh_A ARF-like protein 2; sma 93.6 0.03 1E-06 45.2 2.3 24 92-115 17-40 (186)
424 1f6b_A SAR1; gtpases, N-termin 93.6 0.03 1E-06 46.3 2.4 24 92-115 24-47 (198)
425 3t1o_A Gliding protein MGLA; G 93.6 0.028 9.6E-07 45.4 2.1 25 93-117 14-38 (198)
426 2xtp_A GTPase IMAP family memb 93.6 0.031 1.1E-06 48.3 2.5 24 92-115 21-44 (260)
427 3oes_A GTPase rhebl1; small GT 93.6 0.032 1.1E-06 46.0 2.4 24 92-115 23-46 (201)
428 2gf0_A GTP-binding protein DI- 93.5 0.035 1.2E-06 45.1 2.7 23 93-115 8-30 (199)
429 2bov_A RAla, RAS-related prote 93.5 0.031 1.1E-06 45.7 2.3 24 92-115 13-36 (206)
430 2oil_A CATX-8, RAS-related pro 93.5 0.029 1E-06 45.6 2.1 23 93-115 25-47 (193)
431 1zj6_A ADP-ribosylation factor 93.5 0.035 1.2E-06 45.0 2.6 24 92-115 15-38 (187)
432 3ice_A Transcription terminati 93.4 0.037 1.3E-06 52.2 2.9 33 87-119 168-200 (422)
433 2j9r_A Thymidine kinase; TK1, 93.4 0.038 1.3E-06 47.6 2.8 26 92-117 27-52 (214)
434 2efe_B Small GTP-binding prote 93.4 0.031 1.1E-06 44.6 2.1 23 93-115 12-34 (181)
435 2atv_A RERG, RAS-like estrogen 93.4 0.036 1.2E-06 45.3 2.6 24 92-115 27-50 (196)
436 2h17_A ADP-ribosylation factor 93.3 0.036 1.2E-06 44.8 2.4 24 92-115 20-43 (181)
437 1qhl_A Protein (cell division 93.3 0.0096 3.3E-07 51.7 -1.2 24 94-117 28-51 (227)
438 3bwd_D RAC-like GTP-binding pr 93.3 0.038 1.3E-06 44.1 2.5 23 93-115 8-30 (182)
439 2a5y_B CED-4; apoptosis; HET: 93.3 0.033 1.1E-06 53.9 2.5 23 93-115 152-174 (549)
440 1vg8_A RAS-related protein RAB 93.3 0.036 1.2E-06 45.5 2.3 23 93-115 8-30 (207)
441 1x3s_A RAS-related protein RAB 93.3 0.034 1.1E-06 45.0 2.1 24 92-115 14-37 (195)
442 3ihw_A Centg3; RAS, centaurin, 93.3 0.036 1.2E-06 45.2 2.3 24 92-115 19-42 (184)
443 1zd9_A ADP-ribosylation factor 93.3 0.034 1.2E-06 45.2 2.2 23 93-115 22-44 (188)
444 1w36_D RECD, exodeoxyribonucle 93.3 0.035 1.2E-06 54.8 2.6 27 91-117 162-188 (608)
445 1ega_A Protein (GTP-binding pr 93.3 0.032 1.1E-06 50.0 2.1 24 92-115 7-30 (301)
446 2p5s_A RAS and EF-hand domain 93.3 0.038 1.3E-06 45.4 2.4 24 92-115 27-50 (199)
447 1z6t_A APAF-1, apoptotic prote 93.2 0.032 1.1E-06 54.0 2.2 25 92-116 146-170 (591)
448 2fg5_A RAB-22B, RAS-related pr 93.2 0.036 1.2E-06 45.3 2.3 23 93-115 23-45 (192)
449 2b6h_A ADP-ribosylation factor 93.2 0.038 1.3E-06 45.4 2.4 23 92-114 28-50 (192)
450 1z06_A RAS-related protein RAB 93.2 0.038 1.3E-06 44.9 2.3 24 92-115 19-42 (189)
451 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.05 1.7E-06 43.6 3.0 25 93-117 23-47 (149)
452 3szr_A Interferon-induced GTP- 93.2 0.028 9.7E-07 55.5 1.8 26 90-115 42-67 (608)
453 2iw3_A Elongation factor 3A; a 93.1 0.034 1.2E-06 58.0 2.3 24 92-115 460-483 (986)
454 2iw3_A Elongation factor 3A; a 93.1 0.031 1.1E-06 58.2 2.1 24 92-115 698-721 (986)
455 4bas_A ADP-ribosylation factor 93.1 0.035 1.2E-06 45.1 2.0 25 91-115 15-39 (199)
456 3dz8_A RAS-related protein RAB 93.1 0.044 1.5E-06 44.6 2.6 23 93-115 23-45 (191)
457 3tkl_A RAS-related protein RAB 93.1 0.041 1.4E-06 44.6 2.4 23 93-115 16-38 (196)
458 2fh5_B SR-beta, signal recogni 93.1 0.04 1.4E-06 45.7 2.3 23 93-115 7-29 (214)
459 3lxw_A GTPase IMAP family memb 93.1 0.037 1.3E-06 47.9 2.2 24 92-115 20-43 (247)
460 2gf9_A RAS-related protein RAB 93.0 0.043 1.5E-06 44.5 2.4 23 93-115 22-44 (189)
461 3cph_A RAS-related protein SEC 93.0 0.044 1.5E-06 45.1 2.5 24 92-115 19-42 (213)
462 2q6t_A DNAB replication FORK h 93.0 0.048 1.6E-06 51.5 3.0 36 79-117 189-224 (444)
463 2r8r_A Sensor protein; KDPD, P 93.0 0.043 1.5E-06 47.8 2.4 33 94-126 7-44 (228)
464 4gzl_A RAS-related C3 botulinu 93.0 0.047 1.6E-06 45.3 2.6 24 92-115 29-52 (204)
465 2qnr_A Septin-2, protein NEDD5 93.0 0.04 1.4E-06 49.5 2.3 22 94-115 19-40 (301)
466 3c5c_A RAS-like protein 12; GD 92.9 0.044 1.5E-06 44.7 2.3 24 92-115 20-43 (187)
467 3reg_A RHO-like small GTPase; 92.9 0.041 1.4E-06 44.8 2.2 24 92-115 22-45 (194)
468 1zbd_A Rabphilin-3A; G protein 92.9 0.043 1.5E-06 45.0 2.3 23 93-115 8-30 (203)
469 2q3h_A RAS homolog gene family 92.9 0.045 1.6E-06 44.8 2.4 24 92-115 19-42 (201)
470 2h57_A ADP-ribosylation factor 92.8 0.037 1.3E-06 44.9 1.8 24 92-115 20-43 (190)
471 2qu8_A Putative nucleolar GTP- 92.8 0.045 1.5E-06 46.2 2.3 24 92-115 28-51 (228)
472 4ag6_A VIRB4 ATPase, type IV s 92.8 0.047 1.6E-06 50.4 2.6 26 92-117 34-59 (392)
473 2x77_A ADP-ribosylation factor 92.8 0.038 1.3E-06 44.8 1.8 23 92-114 21-43 (189)
474 1gwn_A RHO-related GTP-binding 92.8 0.049 1.7E-06 45.5 2.4 23 93-115 28-50 (205)
475 2fv8_A H6, RHO-related GTP-bin 92.8 0.046 1.6E-06 45.3 2.3 23 93-115 25-47 (207)
476 1sky_E F1-ATPase, F1-ATP synth 92.8 0.045 1.5E-06 52.6 2.4 35 84-118 142-176 (473)
477 2bcg_Y Protein YP2, GTP-bindin 92.7 0.051 1.7E-06 44.7 2.5 23 93-115 8-30 (206)
478 3ux8_A Excinuclease ABC, A sub 92.7 0.028 9.4E-07 56.0 1.0 22 92-113 347-368 (670)
479 2a5j_A RAS-related protein RAB 92.7 0.047 1.6E-06 44.4 2.2 23 93-115 21-43 (191)
480 3iby_A Ferrous iron transport 92.7 0.046 1.6E-06 47.8 2.3 22 94-115 2-23 (256)
481 2gno_A DNA polymerase III, gam 92.7 0.062 2.1E-06 48.4 3.2 25 93-117 18-42 (305)
482 3cbq_A GTP-binding protein REM 92.7 0.037 1.3E-06 45.7 1.5 22 93-114 23-44 (195)
483 2ew1_A RAS-related protein RAB 92.7 0.052 1.8E-06 45.2 2.5 23 93-115 26-48 (201)
484 2o52_A RAS-related protein RAB 92.6 0.047 1.6E-06 45.0 2.1 23 93-115 25-47 (200)
485 2j1l_A RHO-related GTP-binding 92.6 0.05 1.7E-06 45.4 2.3 24 92-115 33-56 (214)
486 1ni3_A YCHF GTPase, YCHF GTP-b 92.6 0.049 1.7E-06 51.1 2.4 25 91-115 18-42 (392)
487 2il1_A RAB12; G-protein, GDP, 92.6 0.044 1.5E-06 44.8 1.9 23 93-115 26-48 (192)
488 2fu5_C RAS-related protein RAB 92.5 0.034 1.1E-06 44.7 1.1 23 93-115 8-30 (183)
489 4f4c_A Multidrug resistance pr 92.5 0.043 1.5E-06 58.9 2.2 26 92-117 443-468 (1321)
490 3qks_A DNA double-strand break 92.5 0.067 2.3E-06 45.1 3.0 27 93-119 23-49 (203)
491 3b1v_A Ferrous iron uptake tra 92.5 0.052 1.8E-06 48.0 2.4 23 93-115 3-25 (272)
492 1zcb_A G alpha I/13; GTP-bindi 92.4 0.052 1.8E-06 50.3 2.3 23 92-114 32-54 (362)
493 2gco_A H9, RHO-related GTP-bin 92.4 0.06 2E-06 44.3 2.5 23 93-115 25-47 (201)
494 3i8s_A Ferrous iron transport 92.3 0.061 2.1E-06 47.3 2.6 24 92-115 2-25 (274)
495 4f4c_A Multidrug resistance pr 92.3 0.039 1.3E-06 59.2 1.6 25 92-116 1104-1128(1321)
496 2atx_A Small GTP binding prote 92.3 0.061 2.1E-06 43.7 2.3 24 93-116 18-41 (194)
497 3end_A Light-independent proto 92.2 0.054 1.9E-06 48.1 2.1 35 92-126 40-79 (307)
498 3bgw_A DNAB-like replicative h 92.2 0.071 2.4E-06 50.6 3.1 36 79-117 186-221 (444)
499 2hup_A RAS-related protein RAB 92.1 0.068 2.3E-06 44.2 2.5 23 93-115 29-51 (201)
500 3a1s_A Iron(II) transport prot 92.1 0.056 1.9E-06 47.3 2.0 23 93-115 5-27 (258)
No 1
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.96 E-value=2.2e-30 Score=231.87 Aligned_cols=191 Identities=33% Similarity=0.569 Sum_probs=167.8
Q ss_pred hhhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHH
Q 023776 78 FAVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVL 157 (277)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl 157 (277)
..|+....++.+.+++.+|+|+|++||||||+++.|++.+|+.++|+|.+++...++.++.++|...|+..|++.|.+++
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l 112 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEAL 112 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHH
Confidence 46666678888777789999999999999999999999999999999999998883388899999999999999999999
Q ss_pred HHhhhc-CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-c-----CCCC--C----------hhHHHHHHHH
Q 023776 158 KQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-D-----HSGF--P----------ESELFALYKE 218 (277)
Q Consensus 158 ~~l~~~-~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~-----~R~l--~----------~~~l~~~~~~ 218 (277)
.++... ...||++|+|+++++.++..++.+++|||++|++++.+| . .||+ . .+.+..++++
T Consensus 113 ~~l~~~~~~~Via~GgG~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~e 192 (250)
T 3nwj_A 113 KKLSLMYHQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDA 192 (250)
T ss_dssp HHHHHHCSSEEEECCGGGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC----------------CHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCcEEecCCCeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHH
Confidence 998776 689999999999999999998888999999999999999 2 2564 1 2457888999
Q ss_pred HhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHHH
Q 023776 219 MRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKK 268 (277)
Q Consensus 219 r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~~ 268 (277)
|.|.|+.||++|+++.++.++||.||++.++++++++|++++..+.+.++
T Consensus 193 R~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~i~~~~~~~~ 242 (250)
T 3nwj_A 193 RGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQVQSYLEKED 242 (250)
T ss_dssp HHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 99999889999999999999999999999999999999999999987653
No 2
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=3.6e-26 Score=195.96 Aligned_cols=160 Identities=21% Similarity=0.325 Sum_probs=140.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
++.+|+|+|+|||||||+++.|++.+|+.++|.|.++++..| .++.++|...|+..|+..+..++..+....+.||++|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g-~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~g 102 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFH-KTVGELFTERGEAGFRELERNMLHEVAEFENVVISTG 102 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhC-CcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECC
Confidence 467999999999999999999999999999999999988887 7788899999999999999999999887778999999
Q ss_pred CCccccchhhHHhh-cccEEEEecCCcceecc-c----CCCC----C----hhHHHHHHHHHhhcccccceeeeHHHHHh
Q 023776 172 NGAVQSSANLALLR-HGISLWIDVPPGMVARM-D----HSGF----P----ESELFALYKEMRDGYATADVTVSLQKVAS 237 (277)
Q Consensus 172 ~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~----~R~l----~----~~~l~~~~~~r~~~y~~Ad~vId~~~~a~ 237 (277)
+|.+....++..+. .+.+|||++|++++.+| . .||+ + .+.+..++++|.+.|+.||++||+
T Consensus 103 gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt----- 177 (199)
T 3vaa_A 103 GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKRAPFYTQAQYIFNA----- 177 (199)
T ss_dssp TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHHTTSSEEEEC-----
T ss_pred CcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHHhhCCEEEEC-----
Confidence 99999888888776 78999999999999998 4 3443 2 245778888899999889999987
Q ss_pred HhCCCcccccccchhhHHHHHHHHHHH
Q 023776 238 QLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 238 ~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
++.++++++++|++.+..++
T Consensus 178 -------~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 178 -------DELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp -------CCCSSHHHHHHHHHHHHHHT
T ss_pred -------CCCCHHHHHHHHHHHHHHHh
Confidence 47799999999999998765
No 3
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.92 E-value=4.7e-26 Score=191.82 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=137.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~ 172 (277)
+++|+|+|+|||||||+|+.|++.+|+.++|.|.++++..| .++.+++...|+..|+..+..++..+......||++|+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg 83 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTG-ADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGG 83 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcC-CChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCC
Confidence 57899999999999999999999999999999999998887 67788999999999999999999998877788999999
Q ss_pred CccccchhhHHhh-cccEEEEecCCcceeccc------CCCC-C----hhHHHHHHHHHhhcccc-cceeeeHHHHHhHh
Q 023776 173 GAVQSSANLALLR-HGISLWIDVPPGMVARMD------HSGF-P----ESELFALYKEMRDGYAT-ADVTVSLQKVASQL 239 (277)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R~------~R~l-~----~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~ 239 (277)
|+++++.+++.++ .+.+|||++|++++.+|. .||. . .+.+..++.+|.+.|+. +|++||+
T Consensus 84 ~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~~ad~~Idt------- 156 (185)
T 3trf_A 84 GVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQAMADLVYPT------- 156 (185)
T ss_dssp TGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEC-------
T ss_pred ceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCEEEEC-------
Confidence 9999888888887 679999999999999882 2453 2 25678888899999875 9999998
Q ss_pred CCCcccccccchhhHHHHHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.++++++++|++.+.....
T Consensus 157 -----~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 157 -----DDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp -----TTCCHHHHHHHHHHHSCC---
T ss_pred -----CCCCHHHHHHHHHHHHHHHhh
Confidence 367999999999998876654
No 4
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.90 E-value=5.8e-24 Score=176.74 Aligned_cols=151 Identities=20% Similarity=0.333 Sum_probs=123.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE-EEEe
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL-VVCA 170 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~-VIa~ 170 (277)
...+|+|+|++||||||+|+.|++.||++++|+|.++++..| .++.+++..+|+..|++.+.+++..+...+.+ |+++
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~Vi~~ 84 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVG-LSVREIFEELGEDNFRMFEKNLIDELKTLKTPHVIST 84 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHTCHHHHHHHHHHHHHHHHTCSSCCEEEC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhC-CCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCCEEEEC
Confidence 357899999999999999999999999999999999988877 67788888889999998888888888766677 8888
Q ss_pred cCCccccchhhHHhh-cccEEEEecCCcceecc-cCC-----CC-C-hhHHHHHHHHHhhcccc-cceeeeHHHHHhHhC
Q 023776 171 GNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-----GF-P-ESELFALYKEMRDGYAT-ADVTVSLQKVASQLG 240 (277)
Q Consensus 171 g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-----~l-~-~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~ 240 (277)
|+|+++. .+ ++ .+.+|||++|++++.+| ..| +. . .+.+...+..|.+.|.. +|++||++
T Consensus 85 g~g~~~~-~~---l~~~~~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~~a~~~Id~~------- 153 (168)
T 1zuh_A 85 GGGIVMH-EN---LKGLGTTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDAR------- 153 (168)
T ss_dssp CGGGGGC-GG---GTTSEEEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHHTCSEEEEGG-------
T ss_pred CCCEech-hH---HhcCCEEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHHHCCEEEECC-------
Confidence 8787776 43 44 67999999999999999 433 33 3 46688888888888875 89999983
Q ss_pred CCcccccccchhhHHHHHHH
Q 023776 241 YDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 241 ~~dts~~t~eeva~~Il~~i 260 (277)
+ ++++++++|.+.+
T Consensus 154 -----~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 154 -----G-GLNNSLKQVLQFI 167 (168)
T ss_dssp -----G-CHHHHHHHHHHC-
T ss_pred -----C-CHHHHHHHHHHHh
Confidence 4 9999999988765
No 5
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.89 E-value=6.7e-24 Score=178.64 Aligned_cols=156 Identities=21% Similarity=0.292 Sum_probs=128.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~ 172 (277)
+++|+|+|+|||||||+|+.|++.||++++|.|.++++..| .++.+++...|+..|+..+..++..+.....+|+.+|+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~ 80 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTG-RSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG 80 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHS-SCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence 46799999999999999999999999999999999988877 56677887788888998888888887766678888888
Q ss_pred CccccchhhHHhhcccEEEEecCCcceecc-cCC---CC-C----hhHHHHHHHHHhhccc-ccceeeeHHHHHhHhCCC
Q 023776 173 GAVQSSANLALLRHGISLWIDVPPGMVARM-DHS---GF-P----ESELFALYKEMRDGYA-TADVTVSLQKVASQLGYD 242 (277)
Q Consensus 173 g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R---~l-~----~~~l~~~~~~r~~~y~-~Ad~vId~~~~a~~~~~~ 242 (277)
++++++.+++.++.+.+|||++|.+++.+| ..| +. . .+.+..++.++.+.|. .+|++||+
T Consensus 81 ~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~Idt---------- 150 (184)
T 2iyv_A 81 GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDT---------- 150 (184)
T ss_dssp TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHHHCSEEEEC----------
T ss_pred cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhccCCEEEEC----------
Confidence 888887777766667999999999999999 433 33 1 2457777777788775 48999987
Q ss_pred cccccccchhhHHHHHHHH
Q 023776 243 DLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 243 dts~~t~eeva~~Il~~i~ 261 (277)
++.++++++++|.+.+.
T Consensus 151 --~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 151 --NRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp --SSSCHHHHHHHHHTTSC
T ss_pred --CCCCHHHHHHHHHHHHh
Confidence 35899999999987764
No 6
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.88 E-value=4e-23 Score=172.97 Aligned_cols=152 Identities=20% Similarity=0.367 Sum_probs=126.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
++|+|+|+|||||||+|+.||+.+|++++|.|.++++..| .++.+++...|+..|+..+..+++.+.....+||++|++
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g-~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~ 83 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN-QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGG 83 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHT-SCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcC-CCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCC
Confidence 4799999999999999999999999999999999988777 667778887888889888888888887666789998888
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-cC-----CCCC--hhHHHHHHHHHhhcccc-cceeeeHHHHHhHhCCCc
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DH-----SGFP--ESELFALYKEMRDGYAT-ADVTVSLQKVASQLGYDD 243 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~-----R~l~--~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~~~d 243 (277)
++++ .+ ++ .+.+|||++|++++.+| .. |+.. .+.+.+.+++|.+.|.. ++++||+
T Consensus 84 ~~~~-~~---l~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~y~~~~~~~Idt----------- 148 (175)
T 1via_A 84 FVNV-SN---LEKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNI----------- 148 (175)
T ss_dssp GGGS-TT---GGGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHHHHHHCSEEEEC-----------
T ss_pred Eehh-hH---HhcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHhcCCEEEEC-----------
Confidence 8876 43 44 67999999999999999 32 3332 46688888888888864 8999987
Q ss_pred ccccccchhhHHHHHHHHH
Q 023776 244 LDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 244 ts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 149 -~~~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 149 -ENKNIDELLSEIKKVIKE 166 (175)
T ss_dssp -TTCCHHHHHHHHHHHHC-
T ss_pred -CCCCHHHHHHHHHHHHHh
Confidence 468999999999988754
No 7
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.88 E-value=5.1e-23 Score=171.17 Aligned_cols=157 Identities=25% Similarity=0.407 Sum_probs=124.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGN 172 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~ 172 (277)
+..|+|+|++||||||+++.|+..+|+.++|+|.++++..+ ..+..++..+|+..|+..+..++..+....+.++++|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~-~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~ 82 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG-ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG 82 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhC-cCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence 57899999999999999999999999999999998877666 56777888889889988877778887666678888877
Q ss_pred CccccchhhHHhh-cccEEEEecCCcceecc-cC---CCC-----C-hhHHHHHHHHHhhcccc-cceeeeHHHHHhHhC
Q 023776 173 GAVQSSANLALLR-HGISLWIDVPPGMVARM-DH---SGF-----P-ESELFALYKEMRDGYAT-ADVTVSLQKVASQLG 240 (277)
Q Consensus 173 g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~---R~l-----~-~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~ 240 (277)
|.++...+++.++ .+++|||++|++++.+| .. |+. . .+.+..++.+|.|.|.. +|++||+
T Consensus 83 ~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~id~-------- 154 (173)
T 1kag_A 83 GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRT-------- 154 (173)
T ss_dssp TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHHHCSEEC----------
T ss_pred eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhCCEEEEC--------
Confidence 7777666777776 68999999999999999 33 343 1 46678888888888864 8999987
Q ss_pred CCcccccccchhhHHHHHHHHH
Q 023776 241 YDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 241 ~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|.+.+..
T Consensus 155 ----~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 155 ----DDQSAKVVANQIIHMLES 172 (173)
T ss_dssp -------CHHHHHHHHHHHHC-
T ss_pred ----CCCCHHHHHHHHHHHHHh
Confidence 368999999999887753
No 8
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.87 E-value=1.1e-22 Score=168.98 Aligned_cols=154 Identities=23% Similarity=0.350 Sum_probs=125.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|++||||||+|+.|++.||++++|.|.++++..| .++.+++...|+..|+..+..++..+. .+.+||++|+|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~~ 80 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG-MTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGGG 80 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC-CCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCCc
Confidence 5799999999999999999999999999999999888766 666777777788888888878887776 55788888888
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-c--CC----CC-C----hhHHHHHHHHHhhcccccceeeeHHHHHhHhC
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-D--HS----GF-P----ESELFALYKEMRDGYATADVTVSLQKVASQLG 240 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~--~R----~l-~----~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~ 240 (277)
.++.+.++..++ .+.+|||++|++++.+| . .| +. . .+.+..++.++.+.|..+|++||+
T Consensus 81 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~-------- 152 (173)
T 1e6c_A 81 MVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVD-------- 152 (173)
T ss_dssp GGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEE--------
T ss_pred EEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEEC--------
Confidence 888777777775 68999999999999988 5 55 32 2 123566677777767668999987
Q ss_pred CCcccccccchhhHHHHHHHH
Q 023776 241 YDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 241 ~~dts~~t~eeva~~Il~~i~ 261 (277)
++.++++++++|.+.+.
T Consensus 153 ----~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 153 ----ATQPPAAIVCELMQTMR 169 (173)
T ss_dssp ----TTSCHHHHHHHHHHHTT
T ss_pred ----CCCCHHHHHHHHHHHhc
Confidence 35899999999988764
No 9
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.86 E-value=1.9e-22 Score=166.87 Aligned_cols=154 Identities=26% Similarity=0.450 Sum_probs=125.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEecCC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAGNG 173 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g~g 173 (277)
+.|+|+|++||||||+|+.|++.+|++++|+|.+.+...| ..+.+++..+|+..|+..+..++..+...+.+||++|+|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~ 79 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREG-LSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGG 79 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHT-SCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcC-CCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCC
Confidence 4699999999999999999999999999999999988777 667778887888888888888888876566788887766
Q ss_pred ccccchhhHHhh-cccEEEEecCCcceecc-cC---CCC-C--hhHHHHHHHHHhhcccccceeeeHHHHHhHhCCCccc
Q 023776 174 AVQSSANLALLR-HGISLWIDVPPGMVARM-DH---SGF-P--ESELFALYKEMRDGYATADVTVSLQKVASQLGYDDLD 245 (277)
Q Consensus 174 ~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~---R~l-~--~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts 245 (277)
.++.+.++..++ .+.+|||++|++++.+| .. |+. . .+.+...+.++.+.|..+|++| + +
T Consensus 80 ~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i-~------------~ 146 (168)
T 2pt5_A 80 LGANEEALNFMKSRGTTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSKADIKV-K------------G 146 (168)
T ss_dssp HHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTTSSEEE-E------------C
T ss_pred EeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHhCCEEE-C------------C
Confidence 666666777776 68999999999999999 44 432 2 3557777877777775589988 6 3
Q ss_pred ccccchhhHHHHHHHH
Q 023776 246 AVTTEDMTLEVLKEIE 261 (277)
Q Consensus 246 ~~t~eeva~~Il~~i~ 261 (277)
+.++++++++|.+.+.
T Consensus 147 ~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 147 EKPPEEVVKEILLSLE 162 (168)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6899999999988775
No 10
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.75 E-value=4.8e-19 Score=152.98 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=101.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhh--hh-----------------
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKG--YQ----------------- 150 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~--fr----------------- 150 (277)
+.++|.|.|++||||||||+.||++||++|+| +.+++.... |.+ .+.|...++.. |+
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYS-KEVLERFDEKPMNFAFIPVPAGGTTISLEQDI 82 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC----------------------------------CHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCC-HHHHHHHhhhchhHHHHHhccccccccccHHH
Confidence 35789999999999999999999999999999 666654332 133 24555555543 22
Q ss_pred -HHHHHHHHHhh--hcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cC-CCCCh----hHHHHHHHHHhh
Q 023776 151 -QAETEVLKQLS--SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DH-SGFPE----SELFALYKEMRD 221 (277)
Q Consensus 151 -~~e~~vl~~l~--~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~-R~l~~----~~l~~~~~~r~~ 221 (277)
..+.+++++++ ..+++|+...+|.++.+++ .++++|||++|++++++| .. .+++. +.+.++.++|.+
T Consensus 83 ~~~~~~~i~~la~~~~~~~Vi~Gr~g~~vl~~~----~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~ 158 (201)
T 3fdi_A 83 AIRQFNFIRKKANEEKESFVIVGRCAEEILSDN----PNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKV 158 (201)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEESTTHHHHTTTC----TTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEECCcchhcCCC----CCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45677888888 6677888643333333332 246899999999999999 32 24543 345555566666
Q ss_pred cccc-----------cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 222 GYAT-----------ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 222 ~y~~-----------Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+|+. +|++||+ +.++++++++.|++.++.
T Consensus 159 ~y~~~~~~~~~~~~~~dl~Idt------------~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 159 YHNFYCESKWGDSRTYDICIKI------------GKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHCSSCTTBGGGCSEEEEE------------SSSCHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCcccCCEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 6542 6899987 589999999999998864
No 11
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.74 E-value=1.1e-18 Score=153.41 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=105.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh--cCChhHHHHhhhhhhh-----------------------
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA--AGGESAAKAFRESDEK----------------------- 147 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~--~g~~~i~~i~~~~g~~----------------------- 147 (277)
..+|.|+|++||||||+|+.||++||++++|.|.+.+.. .| .+. +.+...++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g-~~~-~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~ 91 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSA-VGE-QFFRLADEKAGNNLLYRLGGGRKIDLHSKPSP 91 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC--------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcC-CCH-HHHHHHHhhccccHHHHHhccccccccccccc
Confidence 468999999999999999999999999999966544322 22 221 222222221
Q ss_pred --------hhhHHHHHHHHHhhhcCcEEEE-ecCCcccc--chhhHHhhcccEEEEecCCcceecc-c-CCCCCh----h
Q 023776 148 --------GYQQAETEVLKQLSSMGRLVVC-AGNGAVQS--SANLALLRHGISLWIDVPPGMVARM-D-HSGFPE----S 210 (277)
Q Consensus 148 --------~fr~~e~~vl~~l~~~~~~VIa-~g~g~v~~--~~~~~~L~~~~vV~L~~~~e~l~~R-~-~R~l~~----~ 210 (277)
.....+.+++++++..+++||. +|+|+++. +++ .++++|||++|++++++| . ..+++. +
T Consensus 92 ~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Grggg~vl~~~~~~----~~~~~VfL~A~~e~r~~Ri~~~~~~~~~~a~~ 167 (223)
T 3hdt_A 92 NDKLTSPENLFKFQSEVMRELAESEPCIFVGRAAGYVLDQDEDI----ERLIRIFVYTDKVKKVQRVMEVDCIDEERAKR 167 (223)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSCEEEESTTHHHHHHHCTTC----CEEEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhCCCEEEEeCCcchhcccccCC----CCeEEEEEECCHHHHHHHHHHhcCCCHHHHHH
Confidence 1113445677788777788887 66666663 332 247899999999999999 2 224443 4
Q ss_pred HHHHHHHHHhhccc-----------ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 211 ELFALYKEMRDGYA-----------TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 211 ~l~~~~~~r~~~y~-----------~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
.+.++.++|.+.|+ .+|++||+ +..+++++++.|++.++.
T Consensus 168 ~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT------------~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 168 RIKKIEKERKEYYKYFTGSEWHSMKNYDLPINT------------TKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEEC------------TTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCcccCeEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 56677788888876 58999987 588999999999998864
No 12
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.70 E-value=3.6e-17 Score=136.21 Aligned_cols=149 Identities=13% Similarity=0.158 Sum_probs=100.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh------hcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhc-C
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE------AAGGESAAKAFRESDEKGYQQAETEVLKQLSSM-G 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~------~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~-~ 164 (277)
++.+|+|+|++||||||+++.|+..+|+.++|.|.+... ..| ..+. ...+...++..+.. +..+... .
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g-~~~~---~~~~~~~~~~~~~~-~~~~~~~~~ 81 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASG-EPLN---DDDRKPWLQALNDA-AFAMQRTNK 81 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTT-CCCC---HHHHHHHHHHHHHH-HHHHHHHCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcC-cCCC---ccccccHHHHHHHH-HHHHHhcCC
Confidence 568999999999999999999999999999999987532 122 2111 11233445554433 3333333 3
Q ss_pred cEEEEecCCccccchhhHHhh-c--c-cEEEEecCCcceecc-cCCC-C--ChhHHHHHHHHHhhc-cc-ccceeeeHHH
Q 023776 165 RLVVCAGNGAVQSSANLALLR-H--G-ISLWIDVPPGMVARM-DHSG-F--PESELFALYKEMRDG-YA-TADVTVSLQK 234 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~-~--~-~vV~L~~~~e~l~~R-~~R~-l--~~~~l~~~~~~r~~~-y~-~Ad~vId~~~ 234 (277)
.+|++++. ..+.+++.++ . + .+|||++|++++.+| ..|+ . +...+...+..+.+. |. .+|++||+
T Consensus 82 ~~vi~~~~---~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~-- 156 (175)
T 1knq_A 82 VSLIVCSA---LKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDI-- 156 (175)
T ss_dssp EEEEECCC---CSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCCCCHHHHHHHHHHCCCCCTTCTTEEEEEC--
T ss_pred cEEEEeCc---hHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCCCchHHHHHHHHhhhCcccCCCCeEEEeC--
Confidence 45666543 3345566665 2 3 699999999999999 5553 2 344455555554554 54 48999987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
+.++++++++|.+.+.
T Consensus 157 -----------~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 157 -----------DQPLEGVVASTIEVIK 172 (175)
T ss_dssp -----------SSCHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHh
Confidence 3799999999988774
No 13
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.69 E-value=3.1e-18 Score=144.80 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=91.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh-hhhhhccCcchhhhhcCChhHHHHhhhhhhhhhh--HHHHHHHHHhhhcCcEEE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA-LRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQ--QAETEVLKQLSSMGRLVV 168 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~-Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr--~~e~~vl~~l~~~~~~VI 168 (277)
++++|+|+|+|||||||+|+.|++. +|+.++|+|.++++... .+.+.+..+..+. ..+..+++.+.. ++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~----~~~~~~~~~~~~~~r~~~~~~~~~l~~----~~ 80 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHF----YTEYDTELDTHIIEEKDEDRLLDFMEP----IM 80 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTC----SCC------CCCCCHHHHHHHHHHHHH----HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhh----hhhHHHHhhhcccCCCCHHHHHHHHHH----HH
Confidence 4678999999999999999999999 79999999998876311 0011111111222 122222322211 01
Q ss_pred EecCCccccchhhHHhh---cccEEEEecCCcceecc-cCCCCChhH---------HHHHHHHHhhcccccceeeeHHHH
Q 023776 169 CAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPESE---------LFALYKEMRDGYATADVTVSLQKV 235 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L~---~~~vV~L~~~~e~l~~R-~~R~l~~~~---------l~~~~~~r~~~y~~Ad~vId~~~~ 235 (277)
.+++|.+++..++..++ .+.+|||++|.+++.+| ..|+.+... +..++.++.+.|+ +|++|++
T Consensus 81 ~~~g~~vi~~~~~~~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~~~~y~-~~~vi~~--- 156 (184)
T 1y63_A 81 VSRGNHVVDYHSSELFPERWFHMVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYE-DDIVLVR--- 156 (184)
T ss_dssp TSSSEEEEECSCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEEE---
T ss_pred hccCCEEEeCchHhhhhhccCCEEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHHHHHhc-cCcEEEC---
Confidence 01122333222333332 46899999999999999 556543322 2333567777786 6889985
Q ss_pred HhHhCCCcccccccchh---hHHHHHHHHHH
Q 023776 236 ASQLGYDDLDAVTTEDM---TLEVLKEIEKL 263 (277)
Q Consensus 236 a~~~~~~dts~~t~eev---a~~Il~~i~~~ 263 (277)
++.+++++ +++|++.+..+
T Consensus 157 ---------n~~~~~~~~~~v~~i~~~l~~~ 178 (184)
T 1y63_A 157 ---------ENDTLEQMAATVEEIRERVEVL 178 (184)
T ss_dssp ---------ECSSHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHH
Confidence 36789999 55555555443
No 14
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.69 E-value=2.7e-17 Score=134.93 Aligned_cols=152 Identities=18% Similarity=0.111 Sum_probs=98.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCCh---------hHHHHhhhhhhhhhhHHHHHHHHHhhhcC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGE---------SAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~---------~i~~i~~~~g~~~fr~~e~~vl~~l~~~~ 164 (277)
+.|+|+|+|||||||+|+.| +.+|+.+++.|+++++..+.. ....++...|...+.......+.. ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 78 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGT--SNH 78 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCS--CCC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHh--cCC
Confidence 58999999999999999999 899999999988887654310 012223333444554433332211 234
Q ss_pred cEEEEecCCccccchhhHHhh-----cccEEEEecCCcceecc-cCCCC-----ChhHHHHHHHH--Hhh--cc-cccce
Q 023776 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSGF-----PESELFALYKE--MRD--GY-ATADV 228 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~R~l-----~~~~l~~~~~~--r~~--~y-~~Ad~ 228 (277)
..||.+| . .....+..++ ...+|||++|++++.+| ..|+. +.+.+.+.+.. +.+ .| ..+|+
T Consensus 79 ~~vi~dg--~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ad~ 155 (179)
T 3lw7_A 79 DLVVFDG--V-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADY 155 (179)
T ss_dssp SCEEEEC--C-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHHHTCSE
T ss_pred CeEEEeC--C-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHHHhCCE
Confidence 5566665 3 4445555553 23799999999999999 55532 33444444321 211 22 35899
Q ss_pred eeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 229 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 229 vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+||+ +.++++++++|.+.+..+.
T Consensus 156 vId~-------------~~~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 156 IITN-------------DSNYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp EEEC-------------CSCHHHHHHHHHHHHHHHC
T ss_pred EEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 9997 3599999999999887653
No 15
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.67 E-value=1.2e-17 Score=139.21 Aligned_cols=154 Identities=10% Similarity=0.011 Sum_probs=92.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcCC-------hhHHHHhhhhhhhhhhHHHHHH---HHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAGG-------ESAAKAFRESDEKGYQQAETEV---LKQ 159 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g~-------~~i~~i~~~~g~~~fr~~e~~v---l~~ 159 (277)
++.+|+|+|+|||||||+|+.|++.++..++ +.|.+++...+. .++.+.+...++..|+..+..+ +..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA 81 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence 3578999999999999999999999987766 478776654331 0111111222344566555443 344
Q ss_pred hhhcCcEEEEecCCccc-----cchhhHHhh-cc-cEEEEecCCcceecc-cCCCC-ChhHHHHHHHHHhhcccccceee
Q 023776 160 LSSMGRLVVCAGNGAVQ-----SSANLALLR-HG-ISLWIDVPPGMVARM-DHSGF-PESELFALYKEMRDGYATADVTV 230 (277)
Q Consensus 160 l~~~~~~VIa~g~g~v~-----~~~~~~~L~-~~-~vV~L~~~~e~l~~R-~~R~l-~~~~l~~~~~~r~~~y~~Ad~vI 230 (277)
+...+..||.++ .+. ...+++.++ .+ ++|||++|++++.+| ..|+- +.......++. ...|..+|++|
T Consensus 82 ~~~~g~~vi~~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r~~~~~~~~~~~~~~-~~~~~~~d~~i 158 (178)
T 1qhx_A 82 MARAGARIIIDD--VFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETARGDRVAGMAAKQAYV-VHEGVEYDVEV 158 (178)
T ss_dssp HHHTTCEEEEEE--CCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHTSSSCTTHHHHHTTG-GGTTCCCSEEE
T ss_pred HHhcCCeEEEEe--ccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhhCCcccchhhhhchh-hccCCCCcEEE
Confidence 444444444433 121 123444554 33 579999999999999 44421 22211111111 11233589999
Q ss_pred eHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 231 SLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 231 d~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
|+ ++.+|++++++|++.+
T Consensus 159 dt------------~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 159 DT------------THKESIECAWAIAAHV 176 (178)
T ss_dssp ET------------TSSCHHHHHHHHHTTC
T ss_pred EC------------CCCCHHHHHHHHHHHh
Confidence 87 4789999999998754
No 16
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.67 E-value=2.8e-17 Score=137.62 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=96.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHH--HHHHH---HHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQA--ETEVL---KQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~--e~~vl---~~l~~~~~~ 166 (277)
++.+|+|+|+|||||||+++.|++.+|+.++|.|.++++.. ++...++..++.. +..++ ..+...+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 82 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQ-------LYDGYDEEYDCPILDEDRVVDELDNQMREGGV 82 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHT-------CEEEEETTTTEEEECHHHHHHHHHHHHHHCCE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcc-------hhhhhhhhhcCccCChHHHHHHHHHHHhcCCE
Confidence 45789999999999999999999999999999999876641 2222333333221 11222 222223344
Q ss_pred EEEecCCccccchhhHHhh---cccEEEEecCCcceecc-cCCCCCh---------hHHHHHHHHHhhcccccceeeeHH
Q 023776 167 VVCAGNGAVQSSANLALLR---HGISLWIDVPPGMVARM-DHSGFPE---------SELFALYKEMRDGYATADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~---~~~vV~L~~~~e~l~~R-~~R~l~~---------~~l~~~~~~r~~~y~~Ad~vId~~ 233 (277)
|+.. .++..+. .+.+|||++|++++.+| ..|+.+. +.+..+++++.+.|. +|++|++
T Consensus 83 vv~~--------~~~~~~~~~~~~~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~~~~i~~- 152 (180)
T 3iij_A 83 IVDY--------HGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-EEIVHQL- 152 (180)
T ss_dssp EEEC--------SCCTTSCGGGCSEEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC-GGGEEEE-
T ss_pred EEEe--------chhhhcchhcCCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEc-
Confidence 4432 2222222 57899999999999999 5555321 234566778888887 6888887
Q ss_pred HHHhHhCCCcccccccchh---hHHHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDM---TLEVLKEIEKLT 264 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eev---a~~Il~~i~~~~ 264 (277)
++.+++++ +.+|++++.++.
T Consensus 153 -----------~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 153 -----------PSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp -----------ECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 47899999 666666666553
No 17
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.66 E-value=1.7e-16 Score=135.68 Aligned_cols=154 Identities=14% Similarity=0.095 Sum_probs=97.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--CChhHHHHhhhhhhhhhhH---H--------------HH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQQ---A--------------ET 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g~~~i~~i~~~~g~~~fr~---~--------------e~ 154 (277)
.+|+|+|++||||||+++.|++ +|+.++|+|.+.++.. ++..+.+++..+|...|+. . ..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 9999999999876643 2234555666555544321 0 00
Q ss_pred HHHHH-------------hhh-cCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-cCC-CCChhHHHHHHH
Q 023776 155 EVLKQ-------------LSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESELFALYK 217 (277)
Q Consensus 155 ~vl~~-------------l~~-~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~ 217 (277)
..+.. +.. .+..||..+ ..+.... +.+ .+.+|||++|++++.+| ..| +.+.+.+.++++
T Consensus 82 ~~l~~~~~p~v~~~~~~~~~~~~~~~vv~~~--~~l~e~~--~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~e~~~~r~~ 157 (206)
T 1jjv_A 82 LWLNNLLHPAIRERMKQKLAEQTAPYTLFVV--PLLIENK--LTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMN 157 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSEEEEEC--TTTTTTT--CGGGCSEEEEEECCHHHHHHHHC-----CHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCCEEEEEe--chhhhcC--cHhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 01111 111 123344322 1222221 223 57999999999999999 556 567777777766
Q ss_pred H---HhhcccccceeeeHHHHHhHhCCCcccccccc----hhhHHHHHHHHHHHH
Q 023776 218 E---MRDGYATADVTVSLQKVASQLGYDDLDAVTTE----DMTLEVLKEIEKLTR 265 (277)
Q Consensus 218 ~---r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~e----eva~~Il~~i~~~~~ 265 (277)
. +.+.|+.||++||++ .+++ +++.+|.+.+..+..
T Consensus 158 ~q~~~~~~~~~ad~vIdn~-------------~~~~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 158 SQVSQQERLKWADDVINND-------------AELAQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HSCCHHHHHHHCSEEEECC-------------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHhCCEEEECC-------------CCccccHHHHHHHHHHHHHHHHH
Confidence 4 344555699999973 4899 888888887766554
No 18
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.65 E-value=3.3e-16 Score=133.82 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=104.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC-hhHHHHhh-hhhhhhhhHHHHHHHHHhhhcCcEEEE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG-ESAAKAFR-ESDEKGYQQAETEVLKQLSSMGRLVVC 169 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~-~~i~~i~~-~~g~~~fr~~e~~vl~~l~~~~~~VIa 169 (277)
++.+|+|+|++||||||+++.|+..+|+.++|.|.+....... ......+. ......+...+..+...+......|++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~viid 107 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTIIT 107 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999999999999999999999999875321000 00000111 112223444444444333333446666
Q ss_pred ecCCccccchhhHHhh----cccEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhcccc-cceeeeHHHHHhHhC
Q 023776 170 AGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYAT-ADVTVSLQKVASQLG 240 (277)
Q Consensus 170 ~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~~-Ad~vId~~~~a~~~~ 240 (277)
++ ...+..++.++ ...+|||++|++++.+| ..|+ .+.+.+..+++.+.+.|.. ++++||+
T Consensus 108 ~~---~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~~~~~l~~~~~~~~~~~~~~~~~~Id~-------- 176 (200)
T 4eun_A 108 CS---ALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFMPASLLQSQLATLEALEPDESGIVLDL-------- 176 (200)
T ss_dssp EC---CCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSSCGGGHHHHHHHCCCCCTTSCEEEEET--------
T ss_pred ch---hhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCCCCCCeEEEEC--------
Confidence 53 23345555554 24789999999999999 5553 3456788888888888864 8999997
Q ss_pred CCcccccccchhhHHHHHHHHH
Q 023776 241 YDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 241 ~~dts~~t~eeva~~Il~~i~~ 262 (277)
+.++++++++|.+.+..
T Consensus 177 -----~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 177 -----RQPPEQLIERALTWLDI 193 (200)
T ss_dssp -----TSCHHHHHHHHHHHHCC
T ss_pred -----CCCHHHHHHHHHHHHHh
Confidence 35999999999988754
No 19
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.65 E-value=9.4e-18 Score=144.64 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=98.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cC-ChhHHHH-------hh----------hhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AG-GESAAKA-------FR----------ESDEK 147 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g-~~~i~~i-------~~----------~~g~~ 147 (277)
++..|+|+|++||||||+++.|++.+|+.++|+|.+++.. .| +..+.++ |. ..|+.
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~ 81 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNED 81 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCcc
Confidence 3578999999999999999999999999999999987642 11 1122222 21 23443
Q ss_pred hhhHHHHHHHH--------------HhhhcCcEEEEecCCccccchhh--HHhh-cccEEEEecCCcceecc-c----CC
Q 023776 148 GYQQAETEVLK--------------QLSSMGRLVVCAGNGAVQSSANL--ALLR-HGISLWIDVPPGMVARM-D----HS 205 (277)
Q Consensus 148 ~fr~~e~~vl~--------------~l~~~~~~VIa~g~g~v~~~~~~--~~L~-~~~vV~L~~~~e~l~~R-~----~R 205 (277)
.++..+...+. .+... ..+++++++++++.... ..++ .+++|||++|++++.+| . .|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~-~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~~~~r 160 (219)
T 2h92_A 82 VTDFLRNNDVTQHVSYVASKEPVRSFAVKK-QKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLR 160 (219)
T ss_dssp CGGGSSSSHHHHHHHHHHTSHHHHHHHHHH-HHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHHT
T ss_pred chhhcCcHHHHHHHHHhccCHHHHHHHHHH-HHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHHHHhc
Confidence 33322111000 00000 00112223333322221 1333 57899999999999998 2 56
Q ss_pred CC--ChhHHHHHHHHHh---------hcccccc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 206 GF--PESELFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 206 ~l--~~~~l~~~~~~r~---------~~y~~Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|+ +.+.+.+.+.+|. +.|..+| ++||+ ++.++++++++|.+.+.
T Consensus 161 ~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~------------~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 161 GIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDT------------TGKSIEEVTDEILAMVS 216 (219)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEEC------------TTCCHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEEC------------CCCCHHHHHHHHHHHHh
Confidence 76 6677777777664 6676666 99987 36799999999988775
No 20
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.64 E-value=1.6e-16 Score=138.39 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=109.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--CChhHHHHhhhhhhhhhh----------------HHH-
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQ----------------QAE- 153 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g~~~i~~i~~~~g~~~fr----------------~~e- 153 (277)
...|+|||.+|||||||++.|++ +|++++|+|.+.++.+ |+..+.+++..+|+..|. +.+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~ 87 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDA 87 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHH
Confidence 46799999999999999999998 9999999999988866 334566777777765542 111
Q ss_pred HHHHHHhh-------------h-cCcEEEEecCCccccc-hhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHH
Q 023776 154 TEVLKQLS-------------S-MGRLVVCAGNGAVQSS-ANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALY 216 (277)
Q Consensus 154 ~~vl~~l~-------------~-~~~~VIa~g~g~v~~~-~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~ 216 (277)
.+.|.++. . ....||... ..+.+ ..+.. ..+.+||++||++++.+| ..| +++++++.+++
T Consensus 88 ~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~--pLL~E~~~~~~-~~D~vi~V~ap~e~r~~Rl~~Rdg~s~eea~~ri 164 (210)
T 4i1u_A 88 RRRLEAITHPLIRAETEREARDAQGPYVIFVV--PLLVESRNWKA-RCDRVLVVDCPVDTQIARVMQRNGFTREQVEAII 164 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSSEEEEC--TTCTTCHHHHH-HCSEEEEEECCHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEE--ecccccCCccc-cCCeEEEEECCHHHHHHHHHhcCCCCHHHHHHHH
Confidence 11222221 1 122333321 12333 33322 268999999999999999 555 78888888777
Q ss_pred HHHhhcc---cccceeeeHHHHHhHhCCCcccc-cccchhhHHHHHHHHHHHHH
Q 023776 217 KEMRDGY---ATADVTVSLQKVASQLGYDDLDA-VTTEDMTLEVLKEIEKLTRK 266 (277)
Q Consensus 217 ~~r~~~y---~~Ad~vId~~~~a~~~~~~dts~-~t~eeva~~Il~~i~~~~~~ 266 (277)
..+.+.. +.||++|+| + .+++++..+|.+.++.+...
T Consensus 165 ~~Q~~~eek~~~AD~VIdN-------------~~gsle~l~~qV~~l~~~~~~~ 205 (210)
T 4i1u_A 165 ARQATREARLAAADDVIVN-------------DAATPDALAVQVDALHQRYLAF 205 (210)
T ss_dssp HHSCCHHHHHHTCSEEEEC-------------SSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHhCCEEEEC-------------CCCCHHHHHHHHHHHHHHHHHH
Confidence 6655443 359999997 5 79999999999988887653
No 21
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.64 E-value=2.9e-16 Score=131.11 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=92.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc-cCcchhhhhcCChhHHHHhhhhhhhhhhHH------HHHHHHHhhhc-
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGGESAAKAFRESDEKGYQQA------ETEVLKQLSSM- 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i-D~D~li~~~~g~~~i~~i~~~~g~~~fr~~------e~~vl~~l~~~- 163 (277)
+++.|+|+|+|||||||+|+.|++.+|+.++ |.|. .| ..+.+++. .|...|+.. ..+.+..+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~-----~g-~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEE-----MG-QALRKLTP-GFSGDPQEHPMWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHH-----HH-HHHHHTST-TCCSCGGGSTTHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhh-----hH-HHHHHhCc-cccchhhhhHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999988 5322 22 33444444 343334322 12334444433
Q ss_pred CcEEEEecCCc--cccchhhHHhh-cccE---EEEecCCcceecc-cCC---CCChhHHHHHHHHHhhcccccceeeeHH
Q 023776 164 GRLVVCAGNGA--VQSSANLALLR-HGIS---LWIDVPPGMVARM-DHS---GFPESELFALYKEMRDGYATADVTVSLQ 233 (277)
Q Consensus 164 ~~~VIa~g~g~--v~~~~~~~~L~-~~~v---V~L~~~~e~l~~R-~~R---~l~~~~l~~~~~~r~~~y~~Ad~vId~~ 233 (277)
+..||..+.-. -.....++.++ .+.. |||++|++++.+| ..| ++..+.+..+++.+.+. +.++ +||+
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~~~~-~Id~- 153 (183)
T 2vli_A 77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-QFQT-HIDT- 153 (183)
T ss_dssp SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-GGCS-EEEC-
T ss_pred CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-ccce-EeeC-
Confidence 44455432100 01122334444 4444 9999999999999 444 45566777777777665 4455 8886
Q ss_pred HHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 234 KVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 234 ~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
++.++++++++|.+.+..+
T Consensus 154 -----------~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 154 -----------AGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp -----------TTCCHHHHHHHHHHHHTCC
T ss_pred -----------CCCCHHHHHHHHHHHHHHh
Confidence 4689999999999888654
No 22
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.63 E-value=2.2e-16 Score=132.20 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=97.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--C---ChhHHHHhhhhhhhhhhHHHHHHHHHhhh--cCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQLSS--MGR 165 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g---~~~i~~i~~~~g~~~fr~~e~~vl~~l~~--~~~ 165 (277)
+..|+|+|+|||||||+|+.|++.+|+.++|.|.++++.. | +..+.+++.. |...+.......+.+... .+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~l~~~i~~~~~~ 84 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKN-GEIVPSIVTVKLLKNAIDANQGK 84 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTSTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4689999999999999999999999999999998876653 1 1334445542 443444444444444432 233
Q ss_pred EEEEecCCccccchhhHHh----h----cccEEEEecCCcceecc-cCCC----C---ChhHHH----HHHHHHhhc---
Q 023776 166 LVVCAGNGAVQSSANLALL----R----HGISLWIDVPPGMVARM-DHSG----F---PESELF----ALYKEMRDG--- 222 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L----~----~~~vV~L~~~~e~l~~R-~~R~----l---~~~~l~----~~~~~r~~~--- 222 (277)
.||..| .+.....+..+ . ++++|||++|++++.+| ..|+ . ..+.+. ..++++.+.
T Consensus 85 ~vi~d~--~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~ri~~~~~~~~~~~~~ 162 (194)
T 1qf9_A 85 NFLVDG--FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162 (194)
T ss_dssp CEEEET--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHH
T ss_pred CEEEeC--cCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhHHHHHHH
Confidence 455443 33322222222 2 46899999999999999 3331 1 123333 333333443
Q ss_pred ccccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 223 YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 223 y~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
|..+| ++||+ +.++++++.+|.+.+.+
T Consensus 163 ~~~~~~~~~id~-------------~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 163 YNKFDKVKIIPA-------------NRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTCEEEEEC-------------SSCHHHHHHHHHHHHHH
T ss_pred HHhCCCEEEEEC-------------CCCHHHHHHHHHHHHHH
Confidence 33467 67876 47999999999988764
No 23
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.63 E-value=1.5e-16 Score=133.35 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=96.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CC----hhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..|+|+|+|||||||+++.|++.+|+.++|+|.++++.. ++ ..+.+++.. |...+.......+......+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~-- 79 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMER-GDLVPDDLILELIREELAER-- 79 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHT-TCCCCHHHHHHHHHHHCCSE--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHhcCC--
Confidence 46789999999999999999999999999999998877641 11 344555543 55555555555555544332
Q ss_pred EEEecCCccccchhhH----Hhh-----cccEEEEecCCcceecc-cCC------C-CChhHHH----HHHHHHhhc---
Q 023776 167 VVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS------G-FPESELF----ALYKEMRDG--- 222 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~----~L~-----~~~vV~L~~~~e~l~~R-~~R------~-l~~~~l~----~~~~~r~~~--- 222 (277)
+|..| .+....... .+. .+.+|||++|++++.+| ..| + .+.+.+. ..+..+.|.
T Consensus 80 ~i~dg--~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~r~~~~~~~~~~l~~~ 157 (186)
T 3cm0_A 80 VIFDG--FPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAELEGRSDDNEETVRRRLEVYREKTEPLVGY 157 (186)
T ss_dssp EEEES--CCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 222222211 232 46899999999999999 333 2 2333333 333333342
Q ss_pred cccc--ceeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 223 YATA--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 223 y~~A--d~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
|+.+ +++||+ +.++++++++|.+.+
T Consensus 158 ~~~~~~~~~id~-------------~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 158 YEARGVLKRVDG-------------LGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHTTCEEEEEC-------------CSCHHHHHHHHHHHH
T ss_pred HHhcCcEEEEEC-------------CCCHHHHHHHHHHHh
Confidence 3334 467775 479999999998776
No 24
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.63 E-value=1e-16 Score=136.60 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=100.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhhhhhhh---HHHHHHH-----------
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESDEKGYQ---QAETEVL----------- 157 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g~~~fr---~~e~~vl----------- 157 (277)
+.|+|+|++||||||+++.|++ +|+.++|+|.+.++.+. ...+.+++..+|+..|+ ..+...+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999877552 23444555555544332 1111111
Q ss_pred ---HHhh-------------h-cC-cEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCCCCChhHHHHHHHH
Q 023776 158 ---KQLS-------------S-MG-RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHSGFPESELFALYKE 218 (277)
Q Consensus 158 ---~~l~-------------~-~~-~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R~l~~~~l~~~~~~ 218 (277)
..+. . .+ ..||..+. .+...++..+ .+.+|||++|++++.+| ..|+++.+.+.+.+..
T Consensus 81 ~~l~~l~~~~v~~~~~~~~~~~~~~~~vive~~--~l~~~~~~~~-~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~ 157 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKITKNLSEDTLFILEAS--LLVEKGTYKN-YDKLIVVYAPYEVCKERAIKRGMSEEDFERRWKK 157 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHSCTTCCEEEECS--CSTTTTCGGG-SSEEEEECCCHHHHHHHHHHTCCCHHHHHHHHTT
T ss_pred HHHHHhhCHHHHHHHHHHHHhccCCCEEEEEcc--ccccCCchhh-CCEEEEEECCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 1110 0 11 34444332 2222332221 57899999999999999 6677776666666655
Q ss_pred Hhhc---ccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 219 MRDG---YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 219 r~~~---y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+.+. +..+|++||+ +.++++++.+|.+.+..+.
T Consensus 158 ~~~~~~~~~~ad~vId~-------------~~~~~~~~~~i~~~l~~~~ 193 (204)
T 2if2_A 158 QMPIEEKVKYADYVIDN-------------SGSIEETYKQVKKVYEELT 193 (204)
T ss_dssp SCCHHHHGGGCSEECCC-------------SSCHHHHHHHHHHHHHTTC
T ss_pred CCChhHHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHHh
Confidence 5432 2358999987 3789999999998886543
No 25
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.63 E-value=8.4e-16 Score=126.57 Aligned_cols=143 Identities=13% Similarity=0.296 Sum_probs=94.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec--
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG-- 171 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g-- 171 (277)
++|+|+|+|||||||+++.|++.+|+.++|.|.+...... +..+|. . ...+.. +..|++..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~---~~~~~~--------~-----~~~l~~-~~~vi~dr~~ 64 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSG---NEKLFE--------H-----FNKLAD-EDNVIIDRFV 64 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTC---HHHHHH--------H-----HHHHTT-CCSEEEESCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhH---HHHHHH--------H-----HHHHHh-CCCeEEeeee
Confidence 4799999999999999999999999999999988765432 122221 0 111211 22233221
Q ss_pred --------C---CccccchhhHHhh-----cccEEEEecCCcceecc-c--CCCC-Ch---hHHHHHHHHHhhcccccce
Q 023776 172 --------N---GAVQSSANLALLR-----HGISLWIDVPPGMVARM-D--HSGF-PE---SELFALYKEMRDGYATADV 228 (277)
Q Consensus 172 --------~---g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~--~R~l-~~---~~l~~~~~~r~~~y~~Ad~ 228 (277)
. ...+....+..+. ++.+|||++|++++.+| . .|+. .. +.+.+.++++.+.|..+++
T Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (173)
T 3kb2_A 65 YSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTY 144 (173)
T ss_dssp HHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSSCEE
T ss_pred cchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHhhcCCCEE
Confidence 0 0111222333332 56899999999999999 3 3444 22 3345566676677766889
Q ss_pred eeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 229 TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 229 vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+||+ ++.++++++++|.+.++++..
T Consensus 145 ~id~------------~~~~~~ev~~~I~~~~~~~~~ 169 (173)
T 3kb2_A 145 SWDT------------GQWSSDEIAKDIIFLVELEHH 169 (173)
T ss_dssp EEET------------TTSCHHHHHHHHHHHHHHGGG
T ss_pred EEEC------------CCCCHHHHHHHHHHHHhCCCc
Confidence 9987 357999999999999987643
No 26
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.62 E-value=3.4e-16 Score=135.03 Aligned_cols=155 Identities=14% Similarity=0.110 Sum_probs=102.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--CChhHHHHhhhhhhhhhhH---HHH-------------
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGESAAKAFRESDEKGYQQ---AET------------- 154 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g~~~i~~i~~~~g~~~fr~---~e~------------- 154 (277)
+..|+|+|++||||||+++.|++ +|+.++|+|.+.++.. ++..+.+++...|+..+.. .+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~ 82 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEE 82 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHH
Confidence 57899999999999999999998 9999999999887654 2234444555444433320 000
Q ss_pred -HHHHH-------------hhh-cCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-cCC-CCChhHHHHHH
Q 023776 155 -EVLKQ-------------LSS-MGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHS-GFPESELFALY 216 (277)
Q Consensus 155 -~vl~~-------------l~~-~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~ 216 (277)
..+.. +.. .+..++..+ . .+...++ .. .+.+|||++|++++.+| ..| +++.+.+..++
T Consensus 83 ~~~l~~~~~p~v~~~~~~~~~~~~~~~vi~~~-~-~l~~~~~--~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~ 158 (218)
T 1vht_A 83 KNWLNALLHPLIQQETQHQIQQATSPYVLWVV-P-LLVENSL--YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQIL 158 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEC-T-TTTTTTG--GGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHhHCHHHHHHHHHHHHhcCCCEEEEEe-e-eeeccCc--cccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00111 111 123333322 1 1222222 22 67999999999999999 555 56667777777
Q ss_pred HHHhhccc---ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 217 KEMRDGYA---TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 217 ~~r~~~y~---~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
..+.+.|. .+|++||++ .++++++.+|.+.+..+..
T Consensus 159 ~~~~~~~~~~~~ad~vId~~-------------~~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 159 AAQATREARLAVADDVIDNN-------------GAPDAIASDVARLHAHYLQ 197 (218)
T ss_dssp HHSCCHHHHHHHCSEEEECS-------------SCTTSHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHhCCEEEECC-------------CCHHHHHHHHHHHHHHHHH
Confidence 66555443 489999873 4999999999999987765
No 27
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.62 E-value=2.1e-16 Score=133.10 Aligned_cols=156 Identities=15% Similarity=0.209 Sum_probs=97.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--C---ChhHHHHhhhhhhhhhhHHHHHHHHHh----hh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQL----SS 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g---~~~i~~i~~~~g~~~fr~~e~~vl~~l----~~ 162 (277)
++..|+|+|+|||||||+|+.|++.+|+.++|.|.+++... + +..+.+++. .|+..+.+.....+.+. ..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 86 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIME-KGQLVPLETVLDMLRDAMVAKVN 86 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999876632 1 134445554 35444444333333222 22
Q ss_pred cCcEEEEecCCccccchhhHH----hh-cccEEEEecCCcceecc-cCC----CC---ChhH----HHHHHHHHhhc---
Q 023776 163 MGRLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHS----GF---PESE----LFALYKEMRDG--- 222 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~~~~----L~-~~~vV~L~~~~e~l~~R-~~R----~l---~~~~----l~~~~~~r~~~--- 222 (277)
.+..||..| .+........ +. ++.+|||++|++++.+| ..| +. +.+. +...+..+.+.
T Consensus 87 ~~~~vi~d~--~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 164 (196)
T 2c95_A 87 TSKGFLIDG--YPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPVIAF 164 (196)
T ss_dssp TCSCEEEES--CCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCcEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334455443 2222122221 22 57899999999999999 333 22 2222 33344444443
Q ss_pred ccccce--eeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 223 YATADV--TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 223 y~~Ad~--vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
|..++. +||+ +.++++++++|.+.+...
T Consensus 165 ~~~~~~~~~Id~-------------~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 165 YEKRGIVRKVNA-------------EGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHTCEEEEEC-------------CSCHHHHHHHHHHHHHHH
T ss_pred HHhcCcEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 333553 5665 489999999999988754
No 28
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.62 E-value=7.7e-16 Score=133.32 Aligned_cols=161 Identities=13% Similarity=0.164 Sum_probs=101.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChhHHHHhhhhhhhh----hhH-HHHHHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKG----YQQ-AETEVLKQL 160 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~i~~i~~~~g~~~----fr~-~e~~vl~~l 160 (277)
+++.|+|+|+|||||||+|+.|++.||+.++|+|.+++.. .| ..+.+++.. |+.. +.. ++..+....
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 81 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG-KRAKEFMEK-GQLVPDEIVVNMVKERLRQPD 81 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH-HHHHHHHHT-TCCCCHHHHHHHHHHHHHSHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh-HHHHHHHHc-CCcCCHHHHHHHHHHHHhhcc
Confidence 4578999999999999999999999999999999988762 22 344445532 3221 211 122222111
Q ss_pred hhcCcEEEEecCCccccchhhHHhh-----cccEEEEecCCcceecc-cCCC------------------------C---
Q 023776 161 SSMGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG------------------------F--- 207 (277)
Q Consensus 161 ~~~~~~VIa~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~R~------------------------l--- 207 (277)
...+..|+ .| ++........+. .+++|||++|++++.+| ..|. +
T Consensus 82 ~~~~~~vi-dg--~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r 158 (222)
T 1zak_A 82 AQENGWLL-DG--YPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQR 158 (222)
T ss_dssp HHHTCEEE-ES--CCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCC
T ss_pred ccCCcEEE-EC--CCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccC
Confidence 12344566 44 333223333343 36899999999999998 3321 1
Q ss_pred ---ChhHHH----HHHHHHhh---cccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHHHHH
Q 023776 208 ---PESELF----ALYKEMRD---GYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKKKMM 270 (277)
Q Consensus 208 ---~~~~l~----~~~~~r~~---~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~~~~ 270 (277)
..+.+. ..+.++.+ .|....++||+ +.++++++++|.+.+......+..+
T Consensus 159 ~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~-------------~~~~~ev~~~I~~~l~~~l~~~~~~ 218 (222)
T 1zak_A 159 FDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQG-------------DATVDAVFAKIDELLGSILEKKNEM 218 (222)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEEC-------------SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEEC-------------CCCHHHHHHHHHHHHHhhccccccc
Confidence 122333 44445555 34334567775 5899999999999999877665443
No 29
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.62 E-value=2.1e-16 Score=134.68 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=95.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh-cCC----hhHHHHhhhhhhhhhhHHHHHHHHHhhh---
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA-AGG----ESAAKAFRESDEKGYQQAETEVLKQLSS--- 162 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~-~g~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~--- 162 (277)
..++.|+|+|+|||||||+|+.|++.+|+.++|.|.++++. .++ ..+.+++. .|+..|......++.+...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 96 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLD-AGDLVPSDLTNELVDDRLNNPD 96 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHH-cCCcccHHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999999999887763 221 23344443 2444455544444444322
Q ss_pred cCcEEEEecCCccccchh---h-HHhh-----cccEEEEecCCcceecc-cCCCC---ChhHHHHHH----HHHhh---c
Q 023776 163 MGRLVVCAGNGAVQSSAN---L-ALLR-----HGISLWIDVPPGMVARM-DHSGF---PESELFALY----KEMRD---G 222 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~---~-~~L~-----~~~vV~L~~~~e~l~~R-~~R~l---~~~~l~~~~----~~r~~---~ 222 (277)
.+..+|..|. +..... + ..+. .+.+|||++|++++.+| ..|+. +.+.+.+.+ ..+.+ .
T Consensus 97 ~~~~vIldg~--~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~~~~e~~~~r~~~~~~~~~~~~~~ 174 (201)
T 2cdn_A 97 AANGFILDGY--PRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEY 174 (201)
T ss_dssp GTTCEEEESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCCeEEEECC--CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhHHHHHH
Confidence 1222333321 111111 1 2232 45899999999999999 44332 333343332 22222 2
Q ss_pred ccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 223 YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 223 y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|..++++||+ +.++++++.+|.+.++
T Consensus 175 ~~~~~~~Id~-------------~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 175 YRDQLKTVDA-------------VGTMDEVFARALRALG 200 (201)
T ss_dssp TTTTEEEEEC-------------CSCHHHHHHHHHHHTT
T ss_pred hcCcEEEEeC-------------CCCHHHHHHHHHHHHc
Confidence 3336788886 4789999999987763
No 30
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.62 E-value=5.2e-16 Score=132.36 Aligned_cols=151 Identities=17% Similarity=0.204 Sum_probs=98.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-ChhHHHHhhhh-hhhhhhHHHHHHHHHhhhcC-cEEEE
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GESAAKAFRES-DEKGYQQAETEVLKQLSSMG-RLVVC 169 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~~i~~i~~~~-g~~~fr~~e~~vl~~l~~~~-~~VIa 169 (277)
+++|+|+|++||||||+++.|++.+|+.++|+|.+...... .......+... ....++ .+.+....+ .+|+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~l~~~~~~~~~vivd 92 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLA-----AIGERLASREPVVVS 92 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHH-----HHHHHHTSSSCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHH-----HHHHHHhcCCCEEEE
Confidence 46899999999999999999999999999999988632110 00001111111 111111 222222333 34554
Q ss_pred ecCCccccchhhHHhh-----cccEEEEecCCcceecc-cCC---CCChhHHHHHHHHHhhccc-ccceeeeHHHHHhHh
Q 023776 170 AGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHS---GFPESELFALYKEMRDGYA-TADVTVSLQKVASQL 239 (277)
Q Consensus 170 ~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~R---~l~~~~l~~~~~~r~~~y~-~Ad~vId~~~~a~~~ 239 (277)
.+. .....++.+. ...+|||++|.+++.+| ..| ..+.+.+..+++.+.+.+. .++++||+
T Consensus 93 ~~~---~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~------- 162 (202)
T 3t61_A 93 CSA---LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLETLEDPRGEVRTVAVDV------- 162 (202)
T ss_dssp CCC---CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHCCCCTTSTTEEEEES-------
T ss_pred CCC---CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHhcCCCCCCCCeEEEeC-------
Confidence 332 2344455554 14799999999999999 434 2355667777777666665 47899987
Q ss_pred CCCcccccccchhhHHHHHHHHHHH
Q 023776 240 GYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 240 ~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+.++++++++|.+.|.+..
T Consensus 163 ------~~~~~e~~~~I~~~l~~~~ 181 (202)
T 3t61_A 163 ------AQPLAEIVREALAGLARLA 181 (202)
T ss_dssp ------SSCHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHhh
Confidence 4899999999999988654
No 31
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.61 E-value=8.6e-16 Score=129.69 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--C---ChhHHHHhhhhhhhhhhHHHHHHHHHh----hh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--G---GESAAKAFRESDEKGYQQAETEVLKQL----SS 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g---~~~i~~i~~~~g~~~fr~~e~~vl~~l----~~ 162 (277)
++..|+|+|+|||||||+|+.|++.+|+.++|.|.++++.. + +..+.+++. .|+..+.+.....+.+. ..
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~i~~~~~ 89 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIME-RGDLVPSGIVLELLKEAMVASLG 89 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhcccc
Confidence 45789999999999999999999999999999999876654 1 133444553 24433333222222221 12
Q ss_pred cCcEEEEecCCccccchhhHHh-----hcccEEEEecCCcceecc-cCCCC----C---hhHHHH----HHHHHhh---c
Q 023776 163 MGRLVVCAGNGAVQSSANLALL-----RHGISLWIDVPPGMVARM-DHSGF----P---ESELFA----LYKEMRD---G 222 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~~~~L-----~~~~vV~L~~~~e~l~~R-~~R~l----~---~~~l~~----~~~~r~~---~ 222 (277)
.+..||..| ++.....+..+ .++++|||++|++++.+| ..|+. . .+.+.+ .+..+.+ .
T Consensus 90 ~~~~vi~dg--~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 167 (199)
T 2bwj_A 90 DTRGFLIDG--YPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAY 167 (199)
T ss_dssp SCSCEEEET--CCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccEEEeC--CCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543 33332333222 246899999999999999 44432 1 122322 3333433 3
Q ss_pred ccc-cc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 223 YAT-AD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 223 y~~-Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
|.. ++ ++||+ +.++++++++|.+.+...
T Consensus 168 ~~~~~~~~~id~-------------~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 168 YETKTQLHKINA-------------EGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHSEEEEEET-------------TSCHHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 443 34 67775 579999999999888654
No 32
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.61 E-value=2e-16 Score=137.05 Aligned_cols=107 Identities=14% Similarity=0.164 Sum_probs=72.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChhHHHHhhhhhhhhhhHHHHHHHHHhhhc--
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM-- 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~-- 163 (277)
+++.|+|+|+|||||||+|+.|++.||+.++++|+++++. .| ..+.+++.. |+..+.+....++......
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~ 81 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIG-LEAKSIIES-GNFVGDEIVLGLVKEKFDLGV 81 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CC-HHHHHHHHH-TCCCCHHHHHHHHHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccc
Confidence 4578999999999999999999999999999999988765 34 556666654 5555666555555443221
Q ss_pred -CcEEEEecCCcccc---chhhH-Hhh-----cccEEEEecCCcceecc
Q 023776 164 -GRLVVCAGNGAVQS---SANLA-LLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 -~~~VIa~g~g~v~~---~~~~~-~L~-----~~~vV~L~~~~e~l~~R 202 (277)
+..+|..| ++.. ...+. .+. .+.+|||++|++++.+|
T Consensus 82 ~~~~~i~dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (217)
T 3be4_A 82 CVNGFVLDG--FPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIER 128 (217)
T ss_dssp TTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred cCCCEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 23334333 2211 11222 222 35899999999999999
No 33
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.60 E-value=7.4e-16 Score=132.24 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=97.2
Q ss_pred ccccccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhh---------------hH
Q 023776 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGY---------------QQ 151 (277)
Q Consensus 87 ~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~f---------------r~ 151 (277)
+|-.-...+|+|+|++||||||+|+.|++.+|++++|+|.+.++.++ ..+.+++..+|+..| .+
T Consensus 6 ~~~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~-~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~ 84 (192)
T 2grj_A 6 IHHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLE-EVKEKLVELFGGSVLEDGKVNRKKLAGIVFES 84 (192)
T ss_dssp ----CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH-HTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHH-HHHHHHHHHhChhhcCCCCcCHHHHHHHHhCC
Confidence 34344568999999999999999999999889999999999988776 344556666665433 22
Q ss_pred HHH-HHHHHhh-------------hcCcEEEEecCCccccchhhHHhhcccEEEEecCCcceecccCCCCChhHHHHHHH
Q 023776 152 AET-EVLKQLS-------------SMGRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESELFALYK 217 (277)
Q Consensus 152 ~e~-~vl~~l~-------------~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R~~R~l~~~~l~~~~~ 217 (277)
.+. ..+..+. ..+..||..+ ..+.+..+.. ..+.+|||++|.+++.+|. +..++.
T Consensus 85 ~~~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~--pll~e~~~~~-~~d~vi~v~a~~e~r~~Rl--------i~~q~~ 153 (192)
T 2grj_A 85 RENLKKLELLVHPLMKKRVQEIINKTSGLIVIEA--ALLKRMGLDQ-LCDHVITVVASRETILKRN--------READRR 153 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC--TTTTTTTGGG-GCSEEEEEECCHHHHHHHC--------SSHHHH
T ss_pred HHHHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEE--eceeecChHH-hCCEEEEEECCHHHHHHHH--------HHhcCC
Confidence 221 1222211 1133444432 2222233221 1578999999999999983 111111
Q ss_pred H-HhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 218 E-MRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 218 ~-r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
. ..+.++.||++|++ +.+++++..+|.+.++.+
T Consensus 154 ~~~~~~~~~AD~vI~n-------------~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 154 LKFQEDIVPQGIVVAN-------------NSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp HTTCTTCCCCSEEEEC-------------SSCHHHHHHHHHHHHHHH
T ss_pred chhhhHHhcCCEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 1 11223459999997 478999999998888766
No 34
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.59 E-value=8.3e-17 Score=135.32 Aligned_cols=154 Identities=13% Similarity=0.061 Sum_probs=87.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHH-------HHHHhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETE-------VLKQLSSMG 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~-------vl~~l~~~~ 164 (277)
++..|+|+|+|||||||+++.|++.+|+.+++.|.+.+...+ . + ...+...+...+.. .+..+...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFD-G-L----GWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH-H-H----CCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHH-h-c----CccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999988766543 1 1 11112222222211 122222334
Q ss_pred cEEEEecCCccc-cchhhHHhh-----cccEEEEecCCcceecc-cC------CCC---Chh-----HHHHHHHHHhhcc
Q 023776 165 RLVVCAGNGAVQ-SSANLALLR-----HGISLWIDVPPGMVARM-DH------SGF---PES-----ELFALYKEMRDGY 223 (277)
Q Consensus 165 ~~VIa~g~g~v~-~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~------R~l---~~~-----~l~~~~~~r~~~y 223 (277)
..||..+..... ....+..+. ...+|||++|++++.+| .. |+. ..+ .+..+++.+.+.|
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLP 157 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCCC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCcc
Confidence 444544332100 000111132 23789999999999998 22 331 111 1223333334455
Q ss_pred c-ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 224 A-TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 224 ~-~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
. .++++||++ .+.++++++|.+.|...+
T Consensus 158 ~~~~~~~Idt~-------------~~~~~~~~~i~~~i~~~l 186 (193)
T 2rhm_A 158 LGGPLLTVDTT-------------FPEQIDMNAIVQWVRQHL 186 (193)
T ss_dssp CCSCEEEEECS-------------SGGGCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCC-------------CCcccCHHHHHHHHHHHH
Confidence 4 478899873 344467777777776554
No 35
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.58 E-value=1.3e-15 Score=134.89 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=95.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh----------hccCcchhhhhcCChhHHHHhhhhhhhhhhHHH-------H
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY----------YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAE-------T 154 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~----------~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e-------~ 154 (277)
++.+|+|+|++||||||+|+.|++.||+. ++|+|.+++.... ..+. +...|...|...+ .
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~-~~~~--~~~~g~~~f~~~~~~d~~~l~ 97 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTS-EQKA--KALKGQFNFDHPDAFDNELIL 97 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCH-HHHH--HHHTTCSCTTSGGGBCHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccCh-hhhh--hhccCCCCCCCcchhhHHHHH
Confidence 45789999999999999999999999998 6899998864332 1111 1122322232211 1
Q ss_pred HHHHHhhh------------------------cCcEEEEecCCcccc-chhhHHhh-cccEEEEecCCcceecc-cCC--
Q 023776 155 EVLKQLSS------------------------MGRLVVCAGNGAVQS-SANLALLR-HGISLWIDVPPGMVARM-DHS-- 205 (277)
Q Consensus 155 ~vl~~l~~------------------------~~~~VIa~g~g~v~~-~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R-- 205 (277)
+.|..+.. ....||..|. ++. ... +.. .+.+|||++|.+++.+| ..|
T Consensus 98 ~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~--~~~~~~~--~~~~~d~vi~l~~~~e~~~~R~~~R~~ 173 (252)
T 1uj2_A 98 KTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGI--LAFYSQE--VRDLFQMKLFVDTDADTRLSRRVLRDI 173 (252)
T ss_dssp HHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECT--TTTSSHH--HHHHCSEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeee--ccccCHH--HHHhcCeeEEEeCCHHHHHHHHHHHHH
Confidence 34555431 1234555542 221 111 112 57899999999999998 333
Q ss_pred ---CCChhHHHHHHHHHh---------hcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 206 ---GFPESELFALYKEMR---------DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 206 ---~l~~~~l~~~~~~r~---------~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+.+.+.+.+.+..+. +.+..||++|++. .|+ +.++++++.+|.+.+....
T Consensus 174 ~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~--------id~-~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 174 SERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRG--------ADN-LVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp HHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETG--------GGC-HHHHHHHHHHHHHHHHC--
T ss_pred hhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecC--------CCC-hhHHHHHHHHHHHHHccch
Confidence 566666555444322 3344589998221 122 5789999999988887544
No 36
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.57 E-value=3.8e-15 Score=124.80 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=94.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC------ChhHHHHhhhhhhhhhhHHHHHHHHH----hh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG------GESAAKAFRESDEKGYQQAETEVLKQ----LS 161 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g------~~~i~~i~~~~g~~~fr~~e~~vl~~----l~ 161 (277)
++..|+|+|+|||||||+|+.|++.+|+.++|.|.++++... +..+.+++. .|...+.+.....+.. ..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~ 80 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIK-EGKIVPVEITISLLKREMDQTM 80 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999999999998866431 122334443 3444443333222221 11
Q ss_pred ---hcCcEEEEecCCccccchhhH----Hh----hcccEEEEecCCcceecc-cC------CCC-ChhHH----HHHHHH
Q 023776 162 ---SMGRLVVCAGNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DH------SGF-PESEL----FALYKE 218 (277)
Q Consensus 162 ---~~~~~VIa~g~g~v~~~~~~~----~L----~~~~vV~L~~~~e~l~~R-~~------R~l-~~~~l----~~~~~~ 218 (277)
..+..||..| ++.....++ .+ ..+.+|||++|++++.+| .. |+- +.+.+ ...+..
T Consensus 81 ~~~~~~~~vi~dg--~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~ 158 (196)
T 1tev_A 81 AANAQKNKFLIDG--FPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 158 (196)
T ss_dssp HHCTTCCEEEEES--CCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEeC--CCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHh
Confidence 1234455433 333333222 11 145799999999999998 32 321 22333 333333
Q ss_pred Hhh---cccc-cce-eeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 219 MRD---GYAT-ADV-TVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 219 r~~---~y~~-Ad~-vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+.| .|.. +++ +||+ +.++++++.+|.+.+.+
T Consensus 159 ~~~~~~~y~~~~~~~~id~-------------~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 159 TKPIIDLYEEMGKVKKIDA-------------SKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHTTCEEEEET-------------TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHh
Confidence 444 3543 565 7886 48999999999988764
No 37
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.57 E-value=4.4e-16 Score=131.88 Aligned_cols=154 Identities=18% Similarity=0.125 Sum_probs=97.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CChhHHHHhhhhhhhhhh---------------HHH-H
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GGESAAKAFRESDEKGYQ---------------QAE-T 154 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~~~i~~i~~~~g~~~fr---------------~~e-~ 154 (277)
++..|+|+|++||||||+|+.|++. |+.++|+|.++++.. | .+ .+++..+ +..|. +.+ .
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~-~~-~~i~~~~-~~~~~~g~i~~~~l~~~~~~~~~~~ 82 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAREN-KE-EELKRLF-PEAVVGGRLDRRALARLVFSDPERL 82 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHH-TH-HHHHHHC-GGGEETTEECHHHHHHHHTTSHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCC-hH-HHHHHHH-HHHHhCCCcCHHHHHHHHhCCHHHH
Confidence 3578999999999999999999998 999999999887655 3 22 2232222 11111 000 0
Q ss_pred HHHH-------------Hhhhc-CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHHHHHH
Q 023776 155 EVLK-------------QLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFALYKE 218 (277)
Q Consensus 155 ~vl~-------------~l~~~-~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~~~~~ 218 (277)
..+. ..... +.+||..+. .+....+.. ..+.+|||++|++++.+| ..| +++.+.+...+..
T Consensus 83 ~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~--~l~~~~~~~-~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~~ 159 (203)
T 1uf9_A 83 KALEAVVHPEVRRLLMEELSRLEAPLVFLEIP--LLFEKGWEG-RLHGTLLVAAPLEERVRRVMARSGLSREEVLARERA 159 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCSEEEEECT--TTTTTTCGG-GSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHTT
T ss_pred HHHHHHhChHHHHHHHHHhhhcCCCEEEEEec--ceeccCchh-hCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0111 11112 345555432 222222211 157899999999999999 566 4565556555554
Q ss_pred Hhhcc---cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 219 MRDGY---ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 219 r~~~y---~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+.+.+ ..+|++||+ +.++++++.+|.+.+..+..
T Consensus 160 ~~~~~~~~~~ad~vId~-------------~~~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 160 QMPEEEKRKRATWVLEN-------------TGSLEDLERALKAVLAELTG 196 (203)
T ss_dssp SCCHHHHHHHCSEEECC-------------SSHHHHHHHHHHHHHHSCCC
T ss_pred CCChhHHHHhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 44433 348999987 24899999999988876544
No 38
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.57 E-value=6.6e-15 Score=131.21 Aligned_cols=149 Identities=11% Similarity=0.143 Sum_probs=98.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh---hhhhhc--cCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA---LRYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~---Lg~~~i--D~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
+++.|+|+|+|||||||+|+.|++. +|+.++ |.|.+.+...+ +...++..++..+...+...... ..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~~~~~~~~~~i~~~l~~-~~ 74 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEEFIKKSTYRLIDSALKN-YW 74 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHHHHHHHHHHHHHHHHTT-SE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHhhC-CE
Confidence 3578999999999999999999998 678877 99887755433 23335555665555555555444 44
Q ss_pred EEEecCCccccchhhHHhh--------cccEEEEecCCcceecc-cCCC--CChhHHHHHHHHHh---hccc--ccceee
Q 023776 167 VVCAGNGAVQSSANLALLR--------HGISLWIDVPPGMVARM-DHSG--FPESELFALYKEMR---DGYA--TADVTV 230 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~--------~~~vV~L~~~~e~l~~R-~~R~--l~~~~l~~~~~~r~---~~y~--~Ad~vI 230 (277)
||..+ .......+..+. .+.+|||++|++++.+| ..|+ .+.+.+..+++... +.|. .++++|
T Consensus 75 vIiD~--~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~I 152 (260)
T 3a4m_A 75 VIVDD--TNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLII 152 (260)
T ss_dssp EEECS--CCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHHHHCCCTTSSCGGGCCSEEE
T ss_pred EEEeC--CcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHHHHhcCccccCCCCCCEEEE
Confidence 55443 222233333221 35799999999999999 4554 45566666654433 2332 368999
Q ss_pred eHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 231 SLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 231 d~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
|++ ...+++++++.|.+.+.
T Consensus 153 d~~-----------~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 153 DTT-----------KDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp ETT-----------SCCCHHHHHHHHHHHHT
T ss_pred eCC-----------CCCCHHHHHHHHHhccc
Confidence 873 12578888888877765
No 39
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.57 E-value=4.5e-15 Score=146.12 Aligned_cols=155 Identities=15% Similarity=0.234 Sum_probs=89.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh------hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg------~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~ 165 (277)
++.+|+|+|++||||||+++.|+..++ +.++|.|.+.+...+ .+. +-..++...++.+ ..+.+.+...+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~--~l~-f~~~~r~~~~r~i-~~v~q~l~~~~~ 443 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS--ELG-FSKAHRDVNVRRI-GFVASEITKNRG 443 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS--SCC-CSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc--ccC-CCHHHHHHHHHHH-HHHHHHHHhcCC
Confidence 678999999999999999999999886 557899887654322 111 1111223333333 334555555566
Q ss_pred EEEEecCC--ccccchhhHHhh-cc--cEEEEecCCcceecccCCCC----ChhHHHHHHHHHhhccc--ccceeeeHHH
Q 023776 166 LVVCAGNG--AVQSSANLALLR-HG--ISLWIDVPPGMVARMDHSGF----PESELFALYKEMRDGYA--TADVTVSLQK 234 (277)
Q Consensus 166 ~VIa~g~g--~v~~~~~~~~L~-~~--~vV~L~~~~e~l~~R~~R~l----~~~~l~~~~~~r~~~y~--~Ad~vId~~~ 234 (277)
.+++++.+ ......+++.++ .+ ++|||++|.|++.+|..||+ ....+.+++.+|.++|. .+|++||+
T Consensus 444 ivi~~~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt-- 521 (552)
T 3cr8_A 444 IAICAPIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT-- 521 (552)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC--
T ss_pred EEEEecCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC--
Confidence 77776543 223334556665 45 89999999999999965664 22457788888888774 48999987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 522 ----------~~~s~~e~v~~Il~~L~~ 539 (552)
T 3cr8_A 522 ----------TGLAIDEAVQQILLKLEH 539 (552)
T ss_dssp ----------SSCCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHh
Confidence 478999999999998864
No 40
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.56 E-value=4.3e-16 Score=132.46 Aligned_cols=147 Identities=18% Similarity=0.176 Sum_probs=95.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc------CChh------HHHHhh----------------hhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGES------AAKAFR----------------ESD 145 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~------g~~~------i~~i~~----------------~~g 145 (277)
+.|+|+|++||||||+|+.|++.+|++++|.|.+.+... | .+ +.++.. ..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAG-VDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG 81 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHT-CCTTCHHHHHHHHHHTTCEEECCTTCCEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcC-CCCCCHHHHHHHHHhCceeeeecCCCceEEECC
Confidence 389999999999999999999999999999999886542 2 10 111111 123
Q ss_pred hhhhhHHHHHHHH---------------------HhhhcCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-
Q 023776 146 EKGYQQAETEVLK---------------------QLSSMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM- 202 (277)
Q Consensus 146 ~~~fr~~e~~vl~---------------------~l~~~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R- 202 (277)
+..|+..+...+. ++. +.+|+ .|.. +. ..+++ .+++|||++|++++.+|
T Consensus 82 ~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi-~g~~--~~---~~~~~~~d~~i~l~a~~e~~~~R~ 153 (208)
T 3ake_A 82 EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVA-EGRD--MG---TAVFPEAAHKFYLTASPEVRAWRR 153 (208)
T ss_dssp EECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEE-EESS--CC---CCCCTTCSEEEEEECCHHHHHHHH
T ss_pred eeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEE-Eccc--ee---EEEecCCcEEEEEECCHHHHHHHH
Confidence 3333322211111 111 22333 3321 11 11222 57899999999999999
Q ss_pred cCC-CCChhHHHHHHHHHhhcc----c-ccc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 203 DHS-GFPESELFALYKEMRDGY----A-TAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 203 ~~R-~l~~~~l~~~~~~r~~~y----~-~Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
..| +.+.+.+.+.+.+|.+.| . .+| ++||+ ++.++++++++|.+.+.
T Consensus 154 ~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~------------~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDT------------GGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEET------------TTSCHHHHHHHHHHHHH
T ss_pred HhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEEC------------CCCCHHHHHHHHHHHHh
Confidence 444 345677778888877766 3 377 99987 35799999999988764
No 41
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.55 E-value=2.2e-16 Score=138.40 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=95.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChh------HHHHhh----------------
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGES------AAKAFR---------------- 142 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~------i~~i~~---------------- 142 (277)
.++.+|+|+|++||||||+++.|++.||+.++|+|.+.+.. .| .+ +.++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQ-LGVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTT-CCTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccC-CCcccHHHHHHHHHhccccccccCCccceE
Confidence 35678999999999999999999999999999999988653 12 11 111110
Q ss_pred -hhhhhhhhHHHHH-HH-------------HHhhhcCcEEEEecCCccccchhh--HHhh-cccEEEEecCCcceecc--
Q 023776 143 -ESDEKGYQQAETE-VL-------------KQLSSMGRLVVCAGNGAVQSSANL--ALLR-HGISLWIDVPPGMVARM-- 202 (277)
Q Consensus 143 -~~g~~~fr~~e~~-vl-------------~~l~~~~~~VIa~g~g~v~~~~~~--~~L~-~~~vV~L~~~~e~l~~R-- 202 (277)
..|+..++.++.. +. ..+... ..+++++++++++..++ .++. .+++|||++|++++.+|
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~-~~~~~~~~~~v~~g~~~~~~~l~~~d~vi~L~a~~e~~~~R~~ 171 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSL-QQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRY 171 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHH-HHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHH-HHHhcccCCEEEECCcchhhhccCCCEEEEEECCHHHHHHHHH
Confidence 1233222211110 00 000000 00111222222221111 1333 57899999999999888
Q ss_pred ---cCCCC--ChhHHHHHHHHHh---------hcccccc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 203 ---DHSGF--PESELFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 203 ---~~R~l--~~~~l~~~~~~r~---------~~y~~Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
..|+. +.+.+.+.+.+|. |.|..+| ++||+ ++.++++++++|.+.+..
T Consensus 172 ~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~------------~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 172 KENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDT------------TGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEEC------------SSCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcC------------CCCCHHHHHHHHHHHHHh
Confidence 24553 6666776666653 4555456 88987 357999999999988764
No 42
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.55 E-value=1e-14 Score=122.32 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=90.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh---hhhhccCcchhhhhcCChhHHHHhhhhhhh------hhhHHHH-HHH----HH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESDEK------GYQQAET-EVL----KQ 159 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~li~~~~g~~~i~~i~~~~g~~------~fr~~e~-~vl----~~ 159 (277)
+.|+|+|++||||||+++.|++.+ |+.++++|.......| ..+.+++.. |.. .|...+. ..+ ..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~i~~ 78 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVG-EVLREILLT-EELDERTELLLFEASRSKLIEEKIIP 78 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHH-HHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchH-HHHHHHHcC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999998 8999998764332223 234444432 221 1111111 112 22
Q ss_pred hhhcCcEEEEe----------cCCccccchhhH----Hh----hcccEEEEecCCcceecc-cCCCC-ChhHH-HHH---
Q 023776 160 LSSMGRLVVCA----------GNGAVQSSANLA----LL----RHGISLWIDVPPGMVARM-DHSGF-PESEL-FAL--- 215 (277)
Q Consensus 160 l~~~~~~VIa~----------g~g~v~~~~~~~----~L----~~~~vV~L~~~~e~l~~R-~~R~l-~~~~l-~~~--- 215 (277)
....+..|++. |.+......... .+ .++.+|||++|++++.+| .+|+. +...+ ..+
T Consensus 79 ~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~~~~~~~~~ 158 (195)
T 2pbr_A 79 DLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKEFLEKVRKG 158 (195)
T ss_dssp HHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHHHHHHHHHH
Confidence 22345566665 322223221111 12 257899999999999999 55543 22222 222
Q ss_pred HHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 216 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 216 ~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
|.+....| ...++||+ +.++++++.+|.+.+..+
T Consensus 159 ~~~~~~~~-~~~~~Id~-------------~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 159 FLELAKEE-ENVVVIDA-------------SGEEEEVFKEILRALSGV 192 (195)
T ss_dssp HHHHHHHS-TTEEEEET-------------TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHhhC-CCEEEEEC-------------CCCHHHHHHHHHHHHHHH
Confidence 22222222 23488886 478999999999888653
No 43
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.55 E-value=1.7e-15 Score=130.91 Aligned_cols=108 Identities=11% Similarity=0.096 Sum_probs=69.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CC----hhHHHHhhhhhhhhhhHHHHHHHHHhhh----
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSS---- 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~---- 162 (277)
+++.|+|+|+|||||||+|+.|++.+|+.++++|+++++.. ++ ..+.+++. .|...+.+....++.....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~l~~~l~~~~~ 81 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMD-QGGLVSDDIMVNMIKDELTNNPA 81 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHCGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHH-CCCcCCHHHHHHHHHHHHHhccc
Confidence 46789999999999999999999999999999999887642 11 33444554 2444455544444444332
Q ss_pred cCcEEEEecCCccccchhhH----Hhh-----cccEEEEecCCcceecc
Q 023776 163 MGRLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~~~----~L~-----~~~vV~L~~~~e~l~~R 202 (277)
.+..+|..| ++....... .+. .+.+|||++|++++.+|
T Consensus 82 ~~~~~i~dg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 128 (220)
T 1aky_A 82 CKNGFILDG--FPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR 128 (220)
T ss_dssp GGSCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred cCCCeEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 122333333 221111111 222 34899999999999998
No 44
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.54 E-value=1.8e-15 Score=134.46 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=90.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-----CChh------HHHHhhhhhh--------------
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-----GGES------AAKAFRESDE-------------- 146 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-----g~~~------i~~i~~~~g~-------------- 146 (277)
++..|+|+|++||||||+++.|+++||+.++|+|.+++... .+.+ +.++....+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 46899999999999999999999999999999999874321 1111 1111111000
Q ss_pred -----hhhhHHHH--------------HHHHHhhhcCcEEEEecCCccccchhhH--Hhh-cccEEEEecCCcceecc--
Q 023776 147 -----KGYQQAET--------------EVLKQLSSMGRLVVCAGNGAVQSSANLA--LLR-HGISLWIDVPPGMVARM-- 202 (277)
Q Consensus 147 -----~~fr~~e~--------------~vl~~l~~~~~~VIa~g~g~v~~~~~~~--~L~-~~~vV~L~~~~e~l~~R-- 202 (277)
...+..+. +.+.+... .++.++|+|++..+.. .+. .+++|||++|++++++|
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~----~~a~~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~ 181 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR----AFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRM 181 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH----TTCCSSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH----HHhhCCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHH
Confidence 00000000 01111100 1122333333222221 122 57899999999999988
Q ss_pred c-----CCCCChhHHHHHHHHHh---------hcccccc-eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 203 D-----HSGFPESELFALYKEMR---------DGYATAD-VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 203 ~-----~R~l~~~~l~~~~~~r~---------~~y~~Ad-~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
. ..+.+.+.+.+.+.+|. |.+..+| ++||+ ++++++++++.|.+.+....
T Consensus 182 ~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idt------------s~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 182 LQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDS------------TSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEEC------------SSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEEC------------cCCCHHHHHHHHHHHHHHHh
Confidence 2 22445555444443333 3333455 88887 58899999999999987653
No 45
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.52 E-value=3.7e-15 Score=128.28 Aligned_cols=154 Identities=15% Similarity=0.266 Sum_probs=95.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh------hhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcC
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg------~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~ 164 (277)
.++..|+|+|++||||||+++.|++.++ +.++|.|.+.....+. . .++...+...|+.+.. .+..+...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~--~-~~~~~~r~~~~~~~~~-~~~~~l~~g 98 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKD--L-GFSEADRNENIRRIAE-VAKLFADSN 98 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTT--C-CSSHHHHHHHHHHHHH-HHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccc--c-CCCHHHHHHHHHHHHH-HHHHHHHCC
Confidence 3578999999999999999999999988 7788888776443221 0 1222344455554432 233444455
Q ss_pred cEEEEecCCccccchhhHHhh--------------cccEEEEecCCcceecccCCCCChhH---HHHHHHHHhhccc---
Q 023776 165 RLVVCAGNGAVQSSANLALLR--------------HGISLWIDVPPGMVARMDHSGFPESE---LFALYKEMRDGYA--- 224 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~--------------~~~vV~L~~~~e~l~~R~~R~l~~~~---l~~~~~~r~~~y~--- 224 (277)
..||++.. . ....+++.++ ++.+|||++|++++.+|..|++-... ....++.+.+.|+
T Consensus 99 ~~VI~d~~-~-~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~~~y~~~~ 176 (211)
T 1m7g_A 99 SIAITSFI-S-PYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGISAPYEAPA 176 (211)
T ss_dssp CEEEEECC-C-CCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTTBCCCCCS
T ss_pred CEEEEecC-C-ccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhhhhccCCC
Confidence 67776632 2 1122333222 15799999999999999545431100 0011112233454
Q ss_pred ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 225 TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 225 ~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
.++++||+ ++.++++++++|++.+..
T Consensus 177 ~~~~~IDt------------~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 177 NPEVHVKN------------YELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp SCSEEEEC------------SSSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEC------------CCCCHHHHHHHHHHHHHH
Confidence 36788887 356999999999998864
No 46
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.51 E-value=2.2e-14 Score=125.36 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=69.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc------CChhHHHHhhhhhhhhhhHHHHHHHHHhhhc--
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA------GGESAAKAFRESDEKGYQQAETEVLKQLSSM-- 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~------g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~-- 163 (277)
.++.|+|+|+|||||||+|+.|++.||+.++++|+++++.. | ..+.+++. .|...+.+....++......
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g-~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~ 92 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELG-KKLKATMD-AGKLVSDEMVLELIEKNLETPP 92 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHH-HHHHHHHH-TTCCCCHHHHHHHHHHHHTSGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhH-HHHHHHHH-CCCcCCHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999999887632 2 33444443 24444555544444443322
Q ss_pred -CcEEEEecCCccccchhhH----Hhh-----cccEEEEecCCcceecc
Q 023776 164 -GRLVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 -~~~VIa~g~g~v~~~~~~~----~L~-----~~~vV~L~~~~e~l~~R 202 (277)
+..+|..| ++....... .+. .+.+|||++|.+++.+|
T Consensus 93 ~~~g~ildg--~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R 139 (233)
T 1ak2_A 93 CKNGFLLDG--FPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRR 139 (233)
T ss_dssp GTTCEEEES--CCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred ccCcEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 12233333 111111111 221 46899999999999999
No 47
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.51 E-value=7.8e-15 Score=124.80 Aligned_cols=155 Identities=13% Similarity=0.129 Sum_probs=93.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc--CCh----hHHHHhhhhhhhhhhHHHHHHHHHh----h
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA--GGE----SAAKAFRESDEKGYQQAETEVLKQL----S 161 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~--g~~----~i~~i~~~~g~~~fr~~e~~vl~~l----~ 161 (277)
++..|+|+|++||||||+|+.|++.+|+.++|+|.++++.. ++. .+..++. .|+..+.......+.+. .
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIK-EGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHH-cCCcCCHHHHHHHHHHHHHhhh
Confidence 45789999999999999999999999999999998877642 212 2333333 34433333333333222 2
Q ss_pred hcC-cEEEEecCCccccchhhHH----hh-cccEEEEecCCcceecc-cCC----CC---ChhHHHHH----HHHHhhc-
Q 023776 162 SMG-RLVVCAGNGAVQSSANLAL----LR-HGISLWIDVPPGMVARM-DHS----GF---PESELFAL----YKEMRDG- 222 (277)
Q Consensus 162 ~~~-~~VIa~g~g~v~~~~~~~~----L~-~~~vV~L~~~~e~l~~R-~~R----~l---~~~~l~~~----~~~r~~~- 222 (277)
..+ ..+|..|. ....+.... +. .+.+|||++|++++.+| ..| +. +.+.+... ++.+.|.
T Consensus 93 ~~g~~~~i~dg~--~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~~~~~~~~~~~ 170 (203)
T 1ukz_A 93 KANKHKFLIDGF--PRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVI 170 (203)
T ss_dssp HTTCCEEEEETC--CCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHH
T ss_pred ccCCCeEEEeCC--CCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHHHHHHhhHHHH
Confidence 222 33333332 111111111 22 57899999999999998 333 22 23333333 3333444
Q ss_pred --cccccee--eeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 223 --YATADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 223 --y~~Ad~v--Id~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
|..+|.+ ||+ +.+++++..+|.+.+..
T Consensus 171 ~~~~~~~~vi~id~-------------~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 171 EYFETKSKVVRVRC-------------DRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHTTTCEEEEEC-------------SSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcEEEEEC-------------CCCHHHHHHHHHHHHhc
Confidence 3346643 565 48999999999988865
No 48
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.51 E-value=8.9e-15 Score=127.13 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=71.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-C----ChhHHHHhhhhhhhhhhHHHHHHH-HHhhh--c
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-G----GESAAKAFRESDEKGYQQAETEVL-KQLSS--M 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g----~~~i~~i~~~~g~~~fr~~e~~vl-~~l~~--~ 163 (277)
+++.|+|+|+|||||||+|+.|++.+|+.++|.|++++... + +..+.+++.. |...+.+.....+ ..+.. .
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 84 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GKLIPDDVMTRLALHELKNLTQ 84 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHHTCTT
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHhcccC
Confidence 45789999999999999999999999999999998887644 1 1334445543 4444444433323 33432 2
Q ss_pred CcEEEEecCCccccchhhHHh-hcccEEEEecCCcceecc
Q 023776 164 GRLVVCAGNGAVQSSANLALL-RHGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 ~~~VIa~g~g~v~~~~~~~~L-~~~~vV~L~~~~e~l~~R 202 (277)
...|+....+.+.....+..+ ..+.+|||++|.+++.+|
T Consensus 85 ~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R 124 (227)
T 1zd8_A 85 YSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQR 124 (227)
T ss_dssp SCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHH
T ss_pred CCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHH
Confidence 345554333332211222222 267899999999999988
No 49
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.51 E-value=3.5e-14 Score=118.67 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=87.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcC--Ch--hHHHHhhhhhhhhhhHHHHHH---HHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAG--GE--SAAKAFRESDEKGYQQAETEV---LKQ 159 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g--~~--~i~~i~~~~g~~~fr~~e~~v---l~~ 159 (277)
+++.|+|+|+|||||||+++.|++.+| +.+++.|+++++... +. +..+++. .....+...+..+ +..
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 80 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRK-MDPETQKRIQKMAGRKIAE 80 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSS-CCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhc-CCHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999 999998877654321 01 1122211 1111222222221 223
Q ss_pred hhhcCcEEEEecCCccccchhh------HHhh---cccEEEEecCCcceec-c-cC--CCCC---hhHH------HHHHH
Q 023776 160 LSSMGRLVVCAGNGAVQSSANL------ALLR---HGISLWIDVPPGMVAR-M-DH--SGFP---ESEL------FALYK 217 (277)
Q Consensus 160 l~~~~~~VIa~g~g~v~~~~~~------~~L~---~~~vV~L~~~~e~l~~-R-~~--R~l~---~~~l------~~~~~ 217 (277)
+...+ .||.+|.+.+.....+ ..++ .+++|||++|++++.+ | .. |+.+ .+.+ ...+.
T Consensus 81 ~~~~~-~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~rRl~~~~R~r~~~~~~~~~~~~~~~~~~~ 159 (192)
T 1kht_A 81 MAKES-PVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAA 159 (192)
T ss_dssp HHTTS-CEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHTSSSCSSSCCCHHHHHHHHHHHHHHH
T ss_pred hccCC-eEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCHHHHHHHHhhhcccCCCcCCHHHHHHHHHHHHHHH
Confidence 32333 4555565543322221 2232 5789999999999996 7 44 6432 2222 22222
Q ss_pred HHhhccccc-ceeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 218 EMRDGYATA-DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 218 ~r~~~y~~A-d~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
.+.+.|..+ .++|++ .+.++++++++|.+.|
T Consensus 160 ~~~~~~~~~~~~~i~~------------~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 160 MSYGVLTGATVKIVQN------------RNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHCCEEEEEEC------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEEeC------------CCCCHHHHHHHHHHHh
Confidence 233333223 344533 2345999999988765
No 50
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.50 E-value=3.8e-14 Score=127.97 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=97.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC--ChhHHHHhhhhh----------------hhhhhHHH-
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG--GESAAKAFRESD----------------EKGYQQAE- 153 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g--~~~i~~i~~~~g----------------~~~fr~~e- 153 (277)
+..|+|+|++||||||+|+.|+ .+|+.++|+|.+.++.+. +.....+...+| ...|...+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~ 153 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQ 153 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHH
Confidence 5789999999999999999999 589999999998665432 011111111111 11122111
Q ss_pred ----------------HHHHHHhhhc-CcEEEEecCCccccchhhHHhhcccEEEEecCCcceecc-cCC-CCChhHHHH
Q 023776 154 ----------------TEVLKQLSSM-GRLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARM-DHS-GFPESELFA 214 (277)
Q Consensus 154 ----------------~~vl~~l~~~-~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R-~~R-~l~~~~l~~ 214 (277)
...+..+... ...||..|. .+....+.. ..+.+|||++|++++.+| ..| +++.+.+..
T Consensus 154 ~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~--~l~~~~~~~-~~d~vI~l~a~~ev~~~Rl~~R~g~s~e~~~~ 230 (281)
T 2f6r_A 154 MKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAA--MLLEAGWQS-MVHEVWTVVIPETEAVRRIVERDGLSEAAAQS 230 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECT--TTTTTTGGG-GCSEEEEEECCHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEec--hhhccchHH-hCCEEEEEcCCHHHHHHHHHHcCCCCHHHHHH
Confidence 0111122112 346676654 232333321 157899999999999999 444 566666665
Q ss_pred HHHHHhhc---ccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 215 LYKEMRDG---YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 215 ~~~~r~~~---y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.+..+.+. +..||++||+ +.+++++..+|.+.+..+..
T Consensus 231 ri~~q~~~~~~~~~AD~vIdn-------------~~s~eel~~~I~~~l~~l~~ 271 (281)
T 2f6r_A 231 RLQSQMSGQQLVEQSNVVLST-------------LWESHVTQSQVEKAWNLLQK 271 (281)
T ss_dssp HHHTSCCHHHHHHTCSEEEEC-------------SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCChHhhHhhCCEEEEC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 55544222 2358999987 35899999999999887643
No 51
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.49 E-value=2.9e-14 Score=118.13 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=81.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHh-hhhhhhccCcchhhhhcCChhHH--HHhhhhhhhhhhHHHHHHHHHhh---hcCcE
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD-ALRYYYFDSDSLVFEAAGGESAA--KAFRESDEKGYQQAETEVLKQLS---SMGRL 166 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~-~Lg~~~iD~D~li~~~~g~~~i~--~i~~~~g~~~fr~~e~~vl~~l~---~~~~~ 166 (277)
+..|+|+|+|||||||+|+.|++ .+|+.+++.|.+.+...+ .+.. ..+...++..+.......+.... ..+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~ 80 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG 80 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhC-CCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence 46899999999999999999999 789999999988766554 1111 01222334444444344455554 44455
Q ss_pred EEEecCCccccchhhHHh----h-cc---cEEEEecCCcceecc-cCCC---CChhHHHHHHHHHhhcccccceeeeHHH
Q 023776 167 VVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG---FPESELFALYKEMRDGYATADVTVSLQK 234 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L----~-~~---~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r~~~y~~Ad~vId~~~ 234 (277)
||..+. ......+..+ + .+ .+|||++|.+++.+| ..|+ .+.+.+..+++...+......++||.
T Consensus 81 vi~d~~--~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~i~~~~~~~~~~~~~~~~~id~-- 156 (181)
T 1ly1_A 81 VIISDT--NLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTP-- 156 (181)
T ss_dssp EEECSC--CCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGGGCCCHHHHHHHHHHHHHHHTCCCC------
T ss_pred EEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhccccCCCCHHHHHHHHHHhhccCCCCccccCC--
Confidence 555432 2222222222 2 22 689999999999999 6664 35566666655543332222466665
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+. |++++..|...+..
T Consensus 157 -----------~~-~~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 157 -----------GK-PKAVIFDVDGTLAK 172 (181)
T ss_dssp ----------------------------
T ss_pred -----------CC-Cceeeehhhhhhhc
Confidence 23 47777777666554
No 52
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.47 E-value=9.6e-15 Score=122.90 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=89.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh-----hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~-----~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++..|+|+|++||||||+++.|++.++. .++|.|.+.....++.. +........+... ..+...+...+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~r~~~~~~~-~~~~~~~~~~g~~ 87 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAG---FTREERLRHLKRI-AWIARLLARNGVI 87 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCC---CCHHHHHHHHHHH-HHHHHHHHTTTCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccC---CChhhHHHHHHHH-HHHHHHHHhCCCE
Confidence 5789999999999999999999999873 56788776544332100 0011111111111 1122223334455
Q ss_pred EEEecCCccc---cchhhHHhh----cccEEEEecCCcceecccCCCC-C---hhHHHHHHHHHhhccc---ccceeeeH
Q 023776 167 VVCAGNGAVQ---SSANLALLR----HGISLWIDVPPGMVARMDHSGF-P---ESELFALYKEMRDGYA---TADVTVSL 232 (277)
Q Consensus 167 VIa~g~g~v~---~~~~~~~L~----~~~vV~L~~~~e~l~~R~~R~l-~---~~~l~~~~~~r~~~y~---~Ad~vId~ 232 (277)
|++.+. ... ....+..+. .+.+|||++|++++.+|..++. . .+.+..+...+.+ |+ .++++||+
T Consensus 88 vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~Id~ 165 (186)
T 2yvu_A 88 VICSFV-SPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDP-YEPPENPQLVLDT 165 (186)
T ss_dssp EEEECC-CCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSC-CCCCSSCSEEEET
T ss_pred EEEeCc-cccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhc-ccCCCCCcEEEEC
Confidence 565432 211 112223333 3589999999999999932211 0 0111222333333 54 37899987
Q ss_pred HHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 233 QKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 233 ~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
++.++++++++|++.+...
T Consensus 166 ------------~~~~~~ev~~~I~~~l~~~ 184 (186)
T 2yvu_A 166 ------------ESNTIEHNVSYLYSLVKAV 184 (186)
T ss_dssp ------------TTSCHHHHHHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHHHHHHh
Confidence 3689999999999988754
No 53
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.47 E-value=7.5e-14 Score=122.11 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=92.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Ch----hHHHHhhhhhhhhhhHHHHHHH-HHhh---h
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVL-KQLS---S 162 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~----~i~~i~~~~g~~~fr~~e~~vl-~~l~---~ 162 (277)
++++|+|.|+|||||+|+|+.|++.+|+.+|++++++++... +. .+.++.. .|...--++-..++ .++. .
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~-~G~lVpde~~~~lv~~~l~~~~~ 106 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMME-RGELVPLEVVLALLKEAMIKLVD 106 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHH-HTCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhccc
Confidence 568899999999999999999999999999999888876542 11 2222222 23322222212222 2222 1
Q ss_pred cCcEEEEecCCccccchhhHHhh-----cccEEEEecCCcceecc-cCCC----CC---hhHHHHHHHHH----hh---c
Q 023776 163 MGRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM-DHSG----FP---ESELFALYKEM----RD---G 222 (277)
Q Consensus 163 ~~~~VIa~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R-~~R~----l~---~~~l~~~~~~r----~~---~ 222 (277)
....+|-. |++-.......|. .+.+|+|++|.+++.+| ..|. .. ++.+..+++.+ .| .
T Consensus 107 ~~~g~ilD--GfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~ 184 (217)
T 3umf_A 107 KNCHFLID--GYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTFNELTKPVIEH 184 (217)
T ss_dssp TCSEEEEE--TBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cccCcccc--cCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 4544333333332 56899999999999999 5553 22 23344333221 22 3
Q ss_pred ccccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 223 YATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 223 y~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
|+..+ ..||. +.++++|.++|.+.|+++
T Consensus 185 Y~~~~~l~~Idg-------------~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 185 YKQQNKVITIDA-------------SGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHTTTCEEEEET-------------TSCHHHHHHHHHHHHHTT
T ss_pred HHhcCCEEEEEC-------------CCCHHHHHHHHHHHHHHc
Confidence 44333 45664 579999999999988753
No 54
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.46 E-value=5.1e-14 Score=120.84 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=64.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHHHhhh---cCc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSS---MGR 165 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~---~~~ 165 (277)
+.|+|+|+|||||||+|+.|++.+|+.++++|.++++... + ..+.+++.. |...........+.+... .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQ-GNLVPDEVTIGIVHERLSKDDCQK 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccCCC
Confidence 3689999999999999999999999999999988876432 1 122233322 221122222222222221 122
Q ss_pred EEEEecCCccccchhhHH----hh-----cccEEEEecCCcceecc-cCC
Q 023776 166 LVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~----L~-----~~~vV~L~~~~e~l~~R-~~R 205 (277)
.+|..| .+........ +. .+.+|||++|.+++.+| ..|
T Consensus 80 ~~ildg--~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 80 GFLLDG--FPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp CEEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred cEEEeC--CCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 333333 2222222211 21 45899999999999999 444
No 55
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.46 E-value=9.3e-14 Score=119.36 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=64.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHH-HHhhh--cCc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVL-KQLSS--MGR 165 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl-~~l~~--~~~ 165 (277)
+.|+|+|+|||||||+|+.|++.+|+.++++|+++++... + ..+.+++.. |..........++ ..+.. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~l~~~~~~~ 79 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDK-GELVPDEVTIGIVKERLGKDDCER 79 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTT-TCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcccccC
Confidence 3699999999999999999999999999999988876432 1 222333322 2211122222222 22221 122
Q ss_pred EEEEecCCccccchhhH----Hhh-----cccEEEEecCCcceecc-cCC
Q 023776 166 LVVCAGNGAVQSSANLA----LLR-----HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~----~L~-----~~~vV~L~~~~e~l~~R-~~R 205 (277)
.+|..| .+....... .+. .+.+|||++|.+++.+| ..|
T Consensus 80 ~~ildg--~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 80 GFLLDG--FPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp CEEEES--CCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred CEEEeC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 233333 222222111 121 35799999999999999 444
No 56
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.46 E-value=1.2e-14 Score=125.39 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=35.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
+..|+|+|++||||||+++.|++.+|++++|+|.+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 46899999999999999999999999999999998874
No 57
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.45 E-value=2.4e-13 Score=115.13 Aligned_cols=154 Identities=10% Similarity=0.132 Sum_probs=89.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhhhccCcchh-hhhcCChhHHHHhhhhhhhhhhHHHH------------HHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLV-FEAAGGESAAKAFRESDEKGYQQAET------------EVL 157 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li-~~~~g~~~i~~i~~~~g~~~fr~~e~------------~vl 157 (277)
+++.|+|+|++||||||+++.|++.| |+.+++.+... ....| ..+.++|...+ .|..... ..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g-~~i~~~~~~~~--~~~~~~~~~l~~~~r~~~~~~i 79 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTG-KMIDDYLTRKK--TYNDHIVNLLFCANRWEFASFI 79 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHH-HHHHHHHTSSC--CCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHH-HHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999998 78888776543 22233 34555554321 1111100 112
Q ss_pred HHhhhcCcEEEEecC-----------CccccchhhHHh-----hcccEEEEecCCcceecccCCC---CCh----hHHHH
Q 023776 158 KQLSSMGRLVVCAGN-----------GAVQSSANLALL-----RHGISLWIDVPPGMVARMDHSG---FPE----SELFA 214 (277)
Q Consensus 158 ~~l~~~~~~VIa~g~-----------g~v~~~~~~~~L-----~~~~vV~L~~~~e~l~~R~~R~---l~~----~~l~~ 214 (277)
......+..||+.+. |. ..+....+ .++.+|||++|++++.+ .|+ ... +.+..
T Consensus 80 ~~~l~~~~~vi~Dr~~~s~~~~~~~~g~--~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~--~R~~d~~e~~~~~~rl~~ 155 (204)
T 2v54_A 80 QEQLEQGITLIVDRYAFSGVAYAAAKGA--SMTLSKSYESGLPKPDLVIFLESGSKEINR--NVGEEIYEDVTFQQKVLQ 155 (204)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHHTTC--CHHHHHHHHTTSBCCSEEEEECCCHHHHTT--CCSSSTTCCSHHHHHHHH
T ss_pred HHHHHCCCEEEEECchhhHHHHHHccCC--CHHHHHHHhcCCCCCCEEEEEeCCHHHHHh--hcCcccccHHHHHHHHHH
Confidence 222234556775431 21 11111111 25789999999998876 232 111 12233
Q ss_pred HHHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 215 LYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 215 ~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.|.+....|....++||+ +.++++++++|.+.+.....
T Consensus 156 ~y~~~~~~~~~~~~~Id~-------------~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 156 EYKKMIEEGDIHWQIISS-------------EFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp HHHHHHTTCSSCEEEECT-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 333333222223377876 58999999999999987654
No 58
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.44 E-value=5.8e-13 Score=113.52 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=90.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh----cCChhHHHHhhhhh---hh----hhhHHHH---HHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA----AGGESAAKAFRESD---EK----GYQQAET---EVL 157 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~----~g~~~i~~i~~~~g---~~----~fr~~e~---~vl 157 (277)
++..|+|+|++||||||+++.|++.|+..+++.+.+.+.. .| ..+.++|...+ .. .|..... ..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i 86 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIG-KLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLI 86 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHH-HHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHH-HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998888876543321 11 22344443211 00 0100000 122
Q ss_pred HHhhhcCcEEEEecC---Cc-------cccchhhHHh-----hcccEEEEecCCcceecc-cCC--CCChhHH----HHH
Q 023776 158 KQLSSMGRLVVCAGN---GA-------VQSSANLALL-----RHGISLWIDVPPGMVARM-DHS--GFPESEL----FAL 215 (277)
Q Consensus 158 ~~l~~~~~~VIa~g~---g~-------v~~~~~~~~L-----~~~~vV~L~~~~e~l~~R-~~R--~l~~~~l----~~~ 215 (277)
......+..||+... +. .+..+....+ ..+.+|||++|++++.+| ..| ......+ ...
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~~~~~~~~~ 166 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGAFQERALRC 166 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHHHHHHHHHH
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHHHHHHHHHH
Confidence 333334556666521 00 0112222222 146899999999999999 322 1222222 222
Q ss_pred HHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHH
Q 023776 216 YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRK 266 (277)
Q Consensus 216 ~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~ 266 (277)
+.+....+....++||+ +.++++++++|.+.+..+...
T Consensus 167 ~~~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 167 FHQLMKDTTLNWKMVDA-------------SKSIEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp HHHHTTCTTSCEEEEET-------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHhh
Confidence 33322222112378876 579999999999999877653
No 59
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.43 E-value=1.2e-13 Score=116.58 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=46.9
Q ss_pred cccEEEEecCCcceecc-cCCCCCh---------hHHHHHHHHHhhccc--ccceeeeHHHHHhHhCCCcccccccchhh
Q 023776 186 HGISLWIDVPPGMVARM-DHSGFPE---------SELFALYKEMRDGYA--TADVTVSLQKVASQLGYDDLDAVTTEDMT 253 (277)
Q Consensus 186 ~~~vV~L~~~~e~l~~R-~~R~l~~---------~~l~~~~~~r~~~y~--~Ad~vId~~~~a~~~~~~dts~~t~eeva 253 (277)
.+.+|||++|++++.+| ..|+.+. +.+...+.++.+.|. .++++||++ .++++++
T Consensus 125 ~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~-------------~~~~~v~ 191 (205)
T 2jaq_A 125 FDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAE-------------LDVKTQI 191 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETT-------------SCHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECC-------------CCHHHHH
Confidence 56899999999999999 4443321 234455555555663 478999973 4999999
Q ss_pred HHHHHHHHHHH
Q 023776 254 LEVLKEIEKLT 264 (277)
Q Consensus 254 ~~Il~~i~~~~ 264 (277)
.+|.+.+..+.
T Consensus 192 ~~I~~~l~~~~ 202 (205)
T 2jaq_A 192 ELIMNKLNSIK 202 (205)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhc
Confidence 99998887543
No 60
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.43 E-value=3.3e-13 Score=112.72 Aligned_cols=153 Identities=8% Similarity=0.073 Sum_probs=86.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhhhhcCChhH---HHHhhhhh----hhhhhHHHHHHHHHhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVFEAAGGESA---AKAFRESD----EKGYQQAETEVLKQLS 161 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~~~~g~~~i---~~i~~~~g----~~~fr~~e~~vl~~l~ 161 (277)
+.|+|+|+|||||||+++.|++.|+ +.+++.|+++.+..+.... .+-|.... ...+..... .+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l 80 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAK-GIAEEA 80 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHH-HHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHH-HHHHHh
Confidence 5799999999999999999999999 8888877776543310000 00000000 000000101 122222
Q ss_pred --hcCcEEEEecCCccccchh------hHHh---hcccEEEEecCCcceecc--cC--CCC-C---hhH------HHHHH
Q 023776 162 --SMGRLVVCAGNGAVQSSAN------LALL---RHGISLWIDVPPGMVARM--DH--SGF-P---ESE------LFALY 216 (277)
Q Consensus 162 --~~~~~VIa~g~g~v~~~~~------~~~L---~~~~vV~L~~~~e~l~~R--~~--R~l-~---~~~------l~~~~ 216 (277)
..+..||..|.+.+..... ...+ .++.+|||++|++++.+| .. |+. + .+. +...+
T Consensus 81 ~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~~~~~~rr~~~~~R~~~~~~~~~~~~~~~~~~~~~ 160 (194)
T 1nks_A 81 RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA 160 (194)
T ss_dssp HHTCSSEEEEEECSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHHHHHCTTTCCCCCCSHHHHHHHHHHHHHH
T ss_pred hccCCCEEEECCchhhccccccccCCCHHHHHhcCCCEEEEEeCCHHHHHHHHHhhcccCCCCccCHHHHHHHHHHHHHH
Confidence 3456777776533322211 2222 267899999999987755 34 653 2 222 23334
Q ss_pred HHHhhcccccc-eee-eHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 217 KEMRDGYATAD-VTV-SLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 217 ~~r~~~y~~Ad-~vI-d~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
.++.+.|..++ ++| |+ +.++++++++|.+.+
T Consensus 161 ~~~~~~~~~~~~~~I~d~-------------~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 161 ATASAVLAGSTVKVIVNV-------------EGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHTCEEEEEECC-------------SSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEeCC-------------CCCHHHHHHHHHHHh
Confidence 44433342233 667 54 578999999988765
No 61
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.42 E-value=7.5e-14 Score=138.97 Aligned_cols=154 Identities=17% Similarity=0.290 Sum_probs=97.2
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh---hhhhccCcc-hhhhhcCChhHHHHhh-hhhhhhhhHHHHHHHHHhhhcCc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDS-LVFEAAGGESAAKAFR-ESDEKGYQQAETEVLKQLSSMGR 165 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~-li~~~~g~~~i~~i~~-~~g~~~fr~~e~~vl~~l~~~~~ 165 (277)
.++..|+|+|+|||||||+|+.|++.| |+.+++.|. .++.... ....|. ..++..|+.+. ++++.+...+.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~---~~~~fs~~dree~~r~i~-eva~~~l~~G~ 125 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KNLGFSPEDREENVRRIA-EVAKLFADAGL 125 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT---TTCCSSHHHHHHHHHHHH-HHHHHHHHTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC---ccccCChhhhHHHHHHHH-HHHHHHHhCCC
Confidence 367899999999999999999999999 877765542 2222111 112233 45666776653 34444444555
Q ss_pred EEEEecCCccc---cchhhHHhh-c---ccEEEEecCCcceecccCCCC-C--h-hHHHHHHHHHhhccc---ccceeee
Q 023776 166 LVVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARMDHSGF-P--E-SELFALYKEMRDGYA---TADVTVS 231 (277)
Q Consensus 166 ~VIa~g~g~v~---~~~~~~~L~-~---~~vV~L~~~~e~l~~R~~R~l-~--~-~~l~~~~~~r~~~y~---~Ad~vId 231 (277)
.|++. .+.+. ...++++++ . .++|||++|++++.+|..|++ . + ..+. .+..+.+.|+ .+|++||
T Consensus 126 iVI~d-~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~-~~~~~~~~Ye~p~~~dlvID 203 (630)
T 1x6v_B 126 VCITS-FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIK-GFTGIDSEYEKPEAPELVLK 203 (630)
T ss_dssp EEEEE-CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC-----CBTTTBCCCCCSSCSEEEE
T ss_pred EEEEe-CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHH-HHHHhhhhhcccCCCcEEEE
Confidence 66654 22222 122344443 2 359999999999999944432 1 0 1111 2334456675 4789998
Q ss_pred HHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 232 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 232 ~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+ ++.++++++++|++.+..
T Consensus 204 t------------s~~s~eevv~~Il~~L~~ 222 (630)
T 1x6v_B 204 T------------DSCDVNDCVQQVVELLQE 222 (630)
T ss_dssp T------------TSSCHHHHHHHHHHHHHH
T ss_pred C------------CCCCHHHHHHHHHHHHHh
Confidence 7 468999999999998865
No 62
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.41 E-value=3.2e-14 Score=121.40 Aligned_cols=153 Identities=16% Similarity=0.270 Sum_probs=88.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---hh--hccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcE
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~~--~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
++.+|+|+|++||||||+++.|+..++ .. ++|.|.+......+.. +..+.....+... ..+...+...+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~ 99 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLS---FKAEDRAENIRRV-GEVAKLFADAGII 99 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCC---SSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccC---cChHHHHHHHHHH-HHHHHHHHhCCce
Confidence 578999999999999999999999994 33 8898887643322100 1111111222221 1223333334455
Q ss_pred EEEecCCccccchhhHHhh------cccEEEEecCCcceecccCCCCCh----hHHHHHHHHHhhccc---ccceeeeHH
Q 023776 167 VVCAGNGAVQSSANLALLR------HGISLWIDVPPGMVARMDHSGFPE----SELFALYKEMRDGYA---TADVTVSLQ 233 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~------~~~vV~L~~~~e~l~~R~~R~l~~----~~l~~~~~~r~~~y~---~Ad~vId~~ 233 (277)
++.+..+ ..+..++.++ ..++|||++|++++.+|..+++.. .++... ......|+ .++++||+
T Consensus 100 vi~~~~~--~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~-~~~~~~~~~~~~~~~~idt- 175 (200)
T 3uie_A 100 CIASLIS--PYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGF-TGIDDPYEPPLNCEISLGR- 175 (200)
T ss_dssp EEEECCC--CCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSC-BTTTBCCCCCSSCSEEECC-
T ss_pred EEEecCC--chHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCC-CCCCCcCcCCCCCCEEEec-
Confidence 5654322 1233444443 125699999999999993221100 000000 00112343 36789987
Q ss_pred HHHhHhCCCcccc-cccchhhHHHHHHHHHH
Q 023776 234 KVASQLGYDDLDA-VTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 234 ~~a~~~~~~dts~-~t~eeva~~Il~~i~~~ 263 (277)
++ +++++++++|++.+...
T Consensus 176 -----------~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 176 -----------EGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp -----------SSCCCHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCHHHHHHHHHHHHHHc
Confidence 46 79999999999988653
No 63
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.41 E-value=5.7e-14 Score=138.86 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=95.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh------hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGR 165 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~------~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~ 165 (277)
++..|+|+|+|||||||+|+.|++.|+. .++|.|.+.....++.. +...+....++.+ ..+++.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~---f~~~er~~~i~ri-~~v~~~~~~~g~ 470 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELG---FTREDRHTNIQRI-AFVATELTRAGA 470 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCC---CSHHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccC---CChhHHHHHHHHH-HHHHHHHHhCCC
Confidence 4678999999999999999999999984 46777776554332100 0011111222222 124455555566
Q ss_pred EEEEecCCcc--ccchhhHHhh-cc--cEEEEecCCcceecccCCCCCh----hHHHHHHHHHhhccc--ccceeeeHHH
Q 023776 166 LVVCAGNGAV--QSSANLALLR-HG--ISLWIDVPPGMVARMDHSGFPE----SELFALYKEMRDGYA--TADVTVSLQK 234 (277)
Q Consensus 166 ~VIa~g~g~v--~~~~~~~~L~-~~--~vV~L~~~~e~l~~R~~R~l~~----~~l~~~~~~r~~~y~--~Ad~vId~~~ 234 (277)
.||++..... ....+++.++ .+ ++|||++|++++.+|..|++.. ..+..+...+.++|. .+|++||+
T Consensus 471 ~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt-- 548 (573)
T 1m8p_A 471 AVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF-- 548 (573)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT--
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC--
Confidence 6776521100 0012233444 24 7999999999999996555311 123333445556554 47899987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 549 ----------s~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 549 ----------SKQSVRSIVHEIILVLES 566 (573)
T ss_dssp ----------TTSCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHh
Confidence 478999999999998864
No 64
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.41 E-value=7.5e-13 Score=112.72 Aligned_cols=159 Identities=19% Similarity=0.278 Sum_probs=88.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC---hhHHHHhhhhhh-------hhhhH-HHH--HHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG---ESAAKAFRESDE-------KGYQQ-AET--EVLK 158 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~---~~i~~i~~~~g~-------~~fr~-~e~--~vl~ 158 (277)
++..|+|+|++||||||+++.|++.|+..++++|.+.+...+. ..+.+++...+. ..|.. .+. +.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIK 88 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988886433221110 112222221100 01110 000 0122
Q ss_pred HhhhcCcEEEEecC---Cccccchh----hHHh--------hcccEEEEecCCcceecc-cCC-C-CChhHHHHHHHHH-
Q 023776 159 QLSSMGRLVVCAGN---GAVQSSAN----LALL--------RHGISLWIDVPPGMVARM-DHS-G-FPESELFALYKEM- 219 (277)
Q Consensus 159 ~l~~~~~~VIa~g~---g~v~~~~~----~~~L--------~~~~vV~L~~~~e~l~~R-~~R-~-l~~~~l~~~~~~r- 219 (277)
.....+..||..+. +.+..... .+.+ .++.+|||++|++++.+| ..| . +....+...+...
T Consensus 89 ~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~~~~~~~~~~~~ 168 (212)
T 2wwf_A 89 SLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEKVETQKKIYETY 168 (212)
T ss_dssp HHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCSHHHHHHHHHHG
T ss_pred HHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccHHHHHHHHHHHH
Confidence 22234456666432 11111000 1111 256899999999999999 433 2 3323333222221
Q ss_pred hhcc-cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 220 RDGY-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 220 ~~~y-~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.... ..++++||+ +.++++++++|.+.+..+
T Consensus 169 ~~~~~~~~~~~Id~-------------~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 169 KHFAHEDYWINIDA-------------TRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp GGGTTCTTEEEEEC-------------SSCHHHHHHHHHHHHTTS
T ss_pred HHHhccCCEEEEEC-------------CCCHHHHHHHHHHHHHHh
Confidence 1111 235788886 478999999999888654
No 65
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.40 E-value=2.2e-13 Score=114.57 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=80.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh---hhhhccCcchhhhhcCChhHHHHhhhhh-----hhh-hhHHHHHHHHHh---h
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYYFDSDSLVFEAAGGESAAKAFRESD-----EKG-YQQAETEVLKQL---S 161 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L---g~~~iD~D~li~~~~g~~~i~~i~~~~g-----~~~-fr~~e~~vl~~l---~ 161 (277)
+.|+|+|++||||||+++.|++.| |+.++.++.-.....| ..+.+++.... ... |.......+.++ .
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~l 79 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETG-EKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHH-HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999999 8888866442211112 22233332100 000 100001112222 2
Q ss_pred hcCcEEEEecC----------CccccchhhHHh--------hcccEEEEecCCcceecc-cCCCC-ChhHH-HHH---HH
Q 023776 162 SMGRLVVCAGN----------GAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHSGF-PESEL-FAL---YK 217 (277)
Q Consensus 162 ~~~~~VIa~g~----------g~v~~~~~~~~L--------~~~~vV~L~~~~e~l~~R-~~R~l-~~~~l-~~~---~~ 217 (277)
..+..|++... +..+.......+ .++.+|||++|++++.+| ..|+. ....+ ..+ +.
T Consensus 80 ~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~ 159 (197)
T 2z0h_A 80 SEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREGYL 159 (197)
T ss_dssp ---CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHHHHHHHHHHHH
T ss_pred hCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 23455665421 111211111111 257899999999999999 66542 22222 222 22
Q ss_pred HHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHH
Q 023776 218 EMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLT 264 (277)
Q Consensus 218 ~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~ 264 (277)
+....+....++||+ +.+++++.++|.+.+..+.
T Consensus 160 ~~~~~~~~~~~~Id~-------------~~~~e~~~~~i~~~l~~~l 193 (197)
T 2z0h_A 160 VLAREHPERIVVLDG-------------KRSIEEIHRDVVREVKRRW 193 (197)
T ss_dssp HHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHTTCC-
T ss_pred HHHHhCCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHh
Confidence 211122223467886 5799999999999887554
No 66
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.40 E-value=1.8e-13 Score=118.99 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=68.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CC----hhHHHHhhhhhhhhhhHHHHHHHHHhhhc--CcE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSSM--GRL 166 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~~--~~~ 166 (277)
+.|+|+|+|||||||+++.|++.+|+.++++|+++++.. ++ ..+.+++. .|...+.+....++...... +..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~-~g~~~~~~~~~~~i~~~l~~~~g~~ 79 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFID-RGDLVPDDITIPMVLETLESKGKDG 79 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHH-cCCcCcHHHHHHHHHHHHhcccCCe
Confidence 369999999999999999999999999999999887752 21 22333443 24333344333334433333 444
Q ss_pred EEEecCCccccchhhHHh---------hcccEEEEecCCcceecc-cCC
Q 023776 167 VVCAGNGAVQSSANLALL---------RHGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L---------~~~~vV~L~~~~e~l~~R-~~R 205 (277)
||..|. +........+ ..+.+|||++|++++.+| ..|
T Consensus 80 vIlDg~--~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 126 (223)
T 2xb4_A 80 WLLDGF--PRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGR 126 (223)
T ss_dssp EEEESC--CCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTB
T ss_pred EEEeCC--cCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcc
Confidence 555432 2211111111 145899999999999999 444
No 67
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.39 E-value=3.7e-13 Score=118.78 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=65.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-Ch----hHHHHhhhhhhhhhhHHHHHHHHH-hhh--c
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-GE----SAAKAFRESDEKGYQQAETEVLKQ-LSS--M 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~~----~i~~i~~~~g~~~fr~~e~~vl~~-l~~--~ 163 (277)
+++.|+|+|+|||||||+|+.|++.+|+.++++|+++++... +. .+.+++.. |...........+.. +.. .
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~-g~~~~~~~~~~~~~~~l~~~~~ 106 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINE-GKLVDDQMVLSLVDEKLKTPQC 106 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHT-TCCCCHHHHHHHHHHHTTSGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhc-CCCCcHHHHHHHHHHHHhcccc
Confidence 568999999999999999999999999999999988877432 12 22233322 211111111122222 221 1
Q ss_pred CcEEEEecCCccccchhhHH----hh-----cccEEEEecCCcceecc
Q 023776 164 GRLVVCAGNGAVQSSANLAL----LR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 ~~~VIa~g~g~v~~~~~~~~----L~-----~~~vV~L~~~~e~l~~R 202 (277)
+..+|..| .+........ +. .+.+|||++|++++.+|
T Consensus 107 ~~~~ildg--~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R 152 (243)
T 3tlx_A 107 KKGFILDG--YPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNR 152 (243)
T ss_dssp SSEEEEES--CCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred cCCEEecC--CCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence 23344433 2222111111 21 46899999999999999
No 68
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.39 E-value=1.4e-13 Score=115.09 Aligned_cols=152 Identities=14% Similarity=0.212 Sum_probs=84.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh---hhhhc--cCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhh-hcCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL---RYYYF--DSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLS-SMGR 165 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L---g~~~i--D~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~-~~~~ 165 (277)
++..|+|+|++||||||+++.|++.+ |++++ |.|.+...... ... +....++..|++.+.. ..+. ..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~ 78 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK--NLG-FSPEDREENVRRIAEV--AKLFADAGL 78 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT--TCC-SSHHHHHHHHHHHHHH--HHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh--ccc-cccccHHHHHHHHHHH--HHHHHHCCC
Confidence 57899999999999999999999988 87776 44444322211 000 1112344555554321 1222 2333
Q ss_pred EEEEecCCccc---cchhhHHhh-c---ccEEEEecCCcceecc-cCCCCChhHHHHHHH---HHhhccc---ccceeee
Q 023776 166 LVVCAGNGAVQ---SSANLALLR-H---GISLWIDVPPGMVARM-DHSGFPESELFALYK---EMRDGYA---TADVTVS 231 (277)
Q Consensus 166 ~VIa~g~g~v~---~~~~~~~L~-~---~~vV~L~~~~e~l~~R-~~R~l~~~~l~~~~~---~r~~~y~---~Ad~vId 231 (277)
.++ ++.-.+. ...++..++ . +++|||++|++++.+| ..|.. .+.-...+. ...+.|+ .+|++||
T Consensus 79 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ad~vid 156 (179)
T 2pez_A 79 VCI-TSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLY-KKARAGEIKGFTGIDSEYEKPEAPELVLK 156 (179)
T ss_dssp EEE-EECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHH-HHHHTTSSCSCBTTTBCCCCCSSCSEEEE
T ss_pred EEE-EecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhH-HHHhcccccccccCCccccCCCCCcEEEE
Confidence 333 3211121 112233332 2 3789999999999999 33310 000000000 0112233 3789998
Q ss_pred HHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 232 LQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 232 ~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+ ++.++++++++|.+.+..
T Consensus 157 ~------------~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 157 T------------DSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp T------------TTSCHHHHHHHHHHHHHH
T ss_pred C------------CCCCHHHHHHHHHHHHHH
Confidence 7 367999999999988754
No 69
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.37 E-value=1e-12 Score=116.13 Aligned_cols=153 Identities=19% Similarity=0.229 Sum_probs=90.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-----CChh------HHHHhhhh----------------
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-----GGES------AAKAFRES---------------- 144 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-----g~~~------i~~i~~~~---------------- 144 (277)
++..|+|+|++||||||+++.|++.||+.++|.|.+.+... .+.+ +.+.....
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 35789999999999999999999999999999999875532 0111 11111110
Q ss_pred hh---hhhhHHH------------------HHHHHHhhhc-CcEEEEecC--CccccchhhHHhhcccEEEEecCCccee
Q 023776 145 DE---KGYQQAE------------------TEVLKQLSSM-GRLVVCAGN--GAVQSSANLALLRHGISLWIDVPPGMVA 200 (277)
Q Consensus 145 g~---~~fr~~e------------------~~vl~~l~~~-~~~VIa~g~--g~v~~~~~~~~L~~~~vV~L~~~~e~l~ 200 (277)
|+ ...+..+ ....+++... +.+|+ .|. |.++.++ .++.|||++|+|+++
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~-~GRd~gt~V~pd------a~lkifl~A~~e~Ra 160 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVV-EGRDIGTVVLPD------ADVKIFLTASAEERA 160 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEE-EESSCCCCCCTT------CSEEEEEECCHHHHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEE-ecccceeEEcCC------CCEEEEEECCHHHHH
Confidence 00 0001000 1111233333 44444 332 3333232 358999999999999
Q ss_pred cc--c-----CCCCChhHHHHHHHHHh----hcc----cccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 201 RM--D-----HSGFPESELFALYKEMR----DGY----ATAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 201 ~R--~-----~R~l~~~~l~~~~~~r~----~~y----~~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
+| . ..+.+.+.+...+.+|. ..| ..++ ++||+ |+++++++++.|++.++..
T Consensus 161 ~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDT------------s~l~iee~v~~I~~~i~~~ 228 (233)
T 3r20_A 161 RRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDT------------SDMDQAQVIAHLLDLVTAQ 228 (233)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEEC------------TTSCHHHHHHHHHHHC---
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEEC------------CCCCHHHHHHHHHHHHHHh
Confidence 98 2 23456555544443332 222 1244 88876 6999999999999988653
No 70
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.37 E-value=7.6e-13 Score=113.86 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=64.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhh------cCChhHHHHhhhhhhhhhhHHHHHHHHHhhhc---C
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEA------AGGESAAKAFRESDEKGYQQAETEVLKQLSSM---G 164 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~------~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~---~ 164 (277)
+.|+|+|+|||||||+|+.|++.+|+.++++|+++++. .| ..+.+++.. |.....+....++...... .
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g-~~i~~~~~~-g~~~~~~~~~~~i~~~l~~~~~~ 78 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELG-KQAKDIMDA-GKLVTDELVIALVKERIAQEDCR 78 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTT-GGGHHHHHH-TCCCCHHHHHHHHHHHHTSGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHH-HHHHHHHHC-CCcCCHHHHHHHHHHHHhccccC
Confidence 36899999999999999999999999999999988773 22 344444442 2211112222222222211 1
Q ss_pred cEEEEecCCccccchhhHHhh-----cccEEEEecCCcceecc
Q 023776 165 RLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R 202 (277)
..+|..| ++........+. .+.+|||++|.+++.+|
T Consensus 79 ~~~i~dg--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R 119 (214)
T 1e4v_A 79 NGFLLDG--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDR 119 (214)
T ss_dssp GCEEEES--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred CCEEEeC--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 2344444 222222223332 36899999999999988
No 71
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.36 E-value=6.3e-13 Score=115.17 Aligned_cols=106 Identities=18% Similarity=0.173 Sum_probs=65.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcC-C----hhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEE
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAG-G----ESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVV 168 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g-~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VI 168 (277)
++|+|.|+|||||+|+|+.|++++|+.+|++++++++... + ..+..+. ..|...--++-..++.+-......+|
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~-~~G~lvpd~iv~~lv~~~l~~~~~~i 79 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYM-ERGELVPDDLIIALIEEVFPKHGNVI 79 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHHHHHHHHCCSSSCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHH-hcCCcCCHHHHHHHHHHhhccCCceE
Confidence 4799999999999999999999999999999888876432 1 1122222 12332222222233333222223333
Q ss_pred EecCCccccchhhHHh----h-----cccEEEEecCCcceecc
Q 023776 169 CAGNGAVQSSANLALL----R-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 169 a~g~g~v~~~~~~~~L----~-----~~~vV~L~~~~e~l~~R 202 (277)
-. |++-.....+.| . .+.||+|++|.+++.+|
T Consensus 80 lD--GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~R 120 (206)
T 3sr0_A 80 FD--GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIER 120 (206)
T ss_dssp EE--SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred ec--CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHH
Confidence 33 444432222222 1 35799999999999998
No 72
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.32 E-value=9.9e-12 Score=105.32 Aligned_cols=156 Identities=12% Similarity=0.142 Sum_probs=84.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh--hccCcchhhhhcCChhHHHHhhhhh------hh----hhhHHHH----H
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESD------EK----GYQQAET----E 155 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~--~iD~D~li~~~~g~~~i~~i~~~~g------~~----~fr~~e~----~ 155 (277)
+++.|+|+|+|||||||+++.|++.++.. ++..+. ..| ..+.+++...+ .. .|..... .
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~----~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 77 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW----NSS-DWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYER 77 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET----TCC-CHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC----CcH-HHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999874 333211 122 22333332211 00 0000000 1
Q ss_pred HHHHhhhcCcEEEEecCCcc---------ccchhhHHh----h-cccEEEEecCCcceecc-c-CCCC-Ch---------
Q 023776 156 VLKQLSSMGRLVVCAGNGAV---------QSSANLALL----R-HGISLWIDVPPGMVARM-D-HSGF-PE--------- 209 (277)
Q Consensus 156 vl~~l~~~~~~VIa~g~g~v---------~~~~~~~~L----~-~~~vV~L~~~~e~l~~R-~-~R~l-~~--------- 209 (277)
.+......+..||..+.-.- ...+....+ . .+.+|||++|++++.+| . .|+. .+
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~ 157 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFP 157 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCT
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccccccccccccccccc
Confidence 11222234556776542100 001111112 1 56899999999999999 5 6651 11
Q ss_pred -----hHHHHHHHHHhhcccc-----cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 210 -----SELFALYKEMRDGYAT-----ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 210 -----~~l~~~~~~r~~~y~~-----Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+............|.. ..++||+ +.++++++++|.+.+..+..
T Consensus 158 ~~d~~e~~~~~~~r~~~~~~~~~~~~~~~~Id~-------------~~~~e~v~~~I~~~l~~~~~ 210 (213)
T 2plr_A 158 GLSPEEGFLKYQGLITEVYDKLVKDENFIVIDG-------------TKTPKEIQIQIRKFVGELID 210 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTTTTTCEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHhhCCEEEEEC-------------CCCHHHHHHHHHHHHHHHhh
Confidence 1111222222222321 4588886 47999999999999886643
No 73
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.31 E-value=1.3e-12 Score=111.80 Aligned_cols=151 Identities=11% Similarity=0.080 Sum_probs=83.8
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhh--h---------------------hccCcchhhhhcCChhHHHHhhhhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRY--Y---------------------YFDSDSLVFEAAGGESAAKAFRESDEK 147 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~--~---------------------~iD~D~li~~~~g~~~i~~i~~~~g~~ 147 (277)
.++..|+|+|+|||||||+++.|++.++- . +++.|.+......+.- .+.....|.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 87 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQF-LEFDKYANN- 87 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCE-EEEEEETTE-
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCC-EEeHHhCCC-
Confidence 57899999999999999999999998742 1 1222221111100000 000000111
Q ss_pred hhhHHHHHHHHHhhhcCcEEEEecCCccccchhhHHhh---c---ccEEEEe-cCCcceecc-cCCCC-ChhHHHHHHH-
Q 023776 148 GYQQAETEVLKQLSSMGRLVVCAGNGAVQSSANLALLR---H---GISLWID-VPPGMVARM-DHSGF-PESELFALYK- 217 (277)
Q Consensus 148 ~fr~~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~---~---~~vV~L~-~~~e~l~~R-~~R~l-~~~~l~~~~~- 217 (277)
.|... ...+..+...+..||..+. ......++ . .++|||+ +|++++.+| ..|+. +.+.+.+.+.
T Consensus 88 ~~~~~-~~~i~~~l~~g~~vi~d~~-----~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~ 161 (204)
T 2qor_A 88 FYGTL-KSEYDLAVGEGKICLFEMN-----INGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQE 161 (204)
T ss_dssp EEEEE-HHHHHHHHHTTCEEEEECC-----HHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred eecCC-HHHHHHHHHcCCeEEEEEC-----HHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 11111 1223344444554444321 11222222 2 3789999 899999999 67764 4555554333
Q ss_pred HHhhc---c-cccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 218 EMRDG---Y-ATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 218 ~r~~~---y-~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.+.+. | ..+|++|++ + ++++++++|.+.|...
T Consensus 162 ~~~~~~~~~~~~~d~vi~n-------------~-~~e~~~~~i~~~i~~~ 197 (204)
T 2qor_A 162 LTREMDEADKVGFNYFIVN-------------D-DLARTYAELREYLLGS 197 (204)
T ss_dssp HHHHHHHHHHHTCSEEEEC-------------S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccCcEEEEC-------------c-CHHHHHHHHHHHHHHH
Confidence 33333 4 348988875 3 7899999999988754
No 74
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.30 E-value=1.7e-12 Score=127.60 Aligned_cols=151 Identities=20% Similarity=0.277 Sum_probs=90.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhh-----hhccCcchhhhhcCChhHHHHhhh-hhhhhhhHHHHHHHHHhhhcCcE
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRY-----YYFDSDSLVFEAAGGESAAKAFRE-SDEKGYQQAETEVLKQLSSMGRL 166 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~-----~~iD~D~li~~~~g~~~i~~i~~~-~g~~~fr~~e~~vl~~l~~~~~~ 166 (277)
+..|+|+|++||||||+|+.|++.|+. .++|.|.+.+...++. .|.. +....+..+ ..+...+...+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~----~f~~~er~~~l~~i-~~~~~~~l~~G~~ 446 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL----GFSKEDRITNILRV-GFVASEIVKHNGV 446 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTC----CSSHHHHHHHHHHH-HHHHHHHHHTTCE
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccc----cccHHHHHHHHHHH-HHHHHHHHhCCCE
Confidence 578999999999999999999999985 7889887765543311 1111 111111111 1123333344555
Q ss_pred EEEecCCccccchhh----HHhh-cc-cEEEEecCCcceecccCCCC-C---hhHHHHHHHHHhhccc--ccceeeeHHH
Q 023776 167 VVCAGNGAVQSSANL----ALLR-HG-ISLWIDVPPGMVARMDHSGF-P---ESELFALYKEMRDGYA--TADVTVSLQK 234 (277)
Q Consensus 167 VIa~g~g~v~~~~~~----~~L~-~~-~vV~L~~~~e~l~~R~~R~l-~---~~~l~~~~~~r~~~y~--~Ad~vId~~~ 234 (277)
||..+. ...+..+ +.++ .+ ++|||++|.+++.+|..|+. . ...+..++..+.+.+. .+|++||+
T Consensus 447 VI~d~~--~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDt-- 522 (546)
T 2gks_A 447 VICALV--SPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDT-- 522 (546)
T ss_dssp EEEECC--CCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEET--
T ss_pred EEEEcC--CCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEEC--
Confidence 555421 1122222 2232 35 79999999999999944542 1 1233333334445443 48999987
Q ss_pred HHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 235 VASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 235 ~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 523 ----------s~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 523 ----------TKLTPEESALKILEFLKK 540 (546)
T ss_dssp ----------TTSCHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHH
Confidence 368999999999988864
No 75
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.30 E-value=1.5e-12 Score=114.74 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=69.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhc-CC----hhHHHHhhhhhhhhhhHHHHHHHHHhhhc---
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAA-GG----ESAAKAFRESDEKGYQQAETEVLKQLSSM--- 163 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~-g~----~~i~~i~~~~g~~~fr~~e~~vl~~l~~~--- 163 (277)
..+.+.|+|+|||||||+|+.|++.+|+.++++++++++.. .+ ..+.+++. .|.....++...++.+....
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~-~G~lvpdei~~~ll~~~l~~~~~ 85 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMD-EGKLVPDSLIIGLVKERLKEADC 85 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHT-TTCCCCHHHHHHHHHHHHHSGGG
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHh-hccccccHHHHHHHHHHHhCccc
Confidence 35789999999999999999999999999999988887642 11 23344444 25444444444444333221
Q ss_pred -CcEEEEecCCccccchhhHHhh-----cccEEEEecCCcceecc
Q 023776 164 -GRLVVCAGNGAVQSSANLALLR-----HGISLWIDVPPGMVARM 202 (277)
Q Consensus 164 -~~~VIa~g~g~v~~~~~~~~L~-----~~~vV~L~~~~e~l~~R 202 (277)
...|+. |++......+.|. .+.||||++|.+++.+|
T Consensus 86 ~~g~ILD---GfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~R 127 (230)
T 3gmt_A 86 ANGYLFD---GFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIER 127 (230)
T ss_dssp TTCEEEE---SCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHH
T ss_pred CCCeEec---CCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHH
Confidence 234442 3443333333343 46899999999999999
No 76
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.28 E-value=4.7e-12 Score=106.41 Aligned_cols=151 Identities=13% Similarity=-0.020 Sum_probs=84.0
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhh-hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~-~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
+.+|+|+|++||||||+++.|+..++. .+++.|.+.+....+....+.........+...+.. +......+..+|..+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~ild~ 80 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-TVNFLLAQNDVVLDY 80 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-HHHHHHTTCEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-HHHHHhcCCcEEEee
Confidence 568999999999999999999987765 688888776543221111111000111222222221 222222333344333
Q ss_pred CCccc-cchhhHHhh------cccEEEEecCCcceecc-cCCCC----ChhHHHHHHHHHhhcccccceeeeHHHHHhHh
Q 023776 172 NGAVQ-SSANLALLR------HGISLWIDVPPGMVARM-DHSGF----PESELFALYKEMRDGYATADVTVSLQKVASQL 239 (277)
Q Consensus 172 ~g~v~-~~~~~~~L~------~~~vV~L~~~~e~l~~R-~~R~l----~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~ 239 (277)
..... .....+.++ ...+|||++|++++.+| ..|+. +...+.. ++.+.+.++..+.+|++
T Consensus 81 ~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~~~~ii~t------- 152 (189)
T 2bdt_A 81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGIDERYFYNT------- 152 (189)
T ss_dssp CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCCTTSEEEC-------
T ss_pred ccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCCccEEEeC-------
Confidence 11110 011122321 22468999999999999 55643 4444555 66666666556778876
Q ss_pred CCCccccc---ccchhhHHHH
Q 023776 240 GYDDLDAV---TTEDMTLEVL 257 (277)
Q Consensus 240 ~~~dts~~---t~eeva~~Il 257 (277)
+.. +++++++.|.
T Consensus 153 -----sh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 153 -----SHLQPTNLNDIVKNLK 168 (189)
T ss_dssp -----SSSCGGGHHHHHHHHH
T ss_pred -----CCCChhhHHHHHHHHh
Confidence 355 6677777766
No 77
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.24 E-value=1.3e-12 Score=121.11 Aligned_cols=113 Identities=20% Similarity=0.262 Sum_probs=84.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch--------------hhhhcCCh-----hHHHH-hhhhhhhhhhH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--------------VFEAAGGE-----SAAKA-FRESDEKGYQQ 151 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l--------------i~~~~g~~-----~i~~i-~~~~g~~~fr~ 151 (277)
++.+|+|+||+||||||||..||++++..+||+|.+ .++..| . ++.+. ...++...|++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~g-vphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGG-VPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTT-CCEESSSCBCGGGCCCCHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcC-CCEeeccccCcccCccCHHHHHH
Confidence 346899999999999999999999999999999998 333333 2 33344 55667788999
Q ss_pred HHHHHHHHhhhcCcEEEEecCCccccchhhH---------------------Hhh-cccEEEEecCCcceecc-cCC
Q 023776 152 AETEVLKQLSSMGRLVVCAGNGAVQSSANLA---------------------LLR-HGISLWIDVPPGMVARM-DHS 205 (277)
Q Consensus 152 ~e~~vl~~l~~~~~~VIa~g~g~v~~~~~~~---------------------~L~-~~~vV~L~~~~e~l~~R-~~R 205 (277)
.+..++.++...++.+|.+||+......... .++ ..++|||+++.+++.+| ..|
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~RI~~R 194 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKR 194 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHHHHhh
Confidence 8888888888778888888876433221111 122 35789999999999999 555
No 78
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.22 E-value=6e-12 Score=107.40 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=87.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhhhccCcchhhhhcCChhH-HHHhhh------hhhhhhhHHHHHHHHHhh--
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESA-AKAFRE------SDEKGYQQAETEVLKQLS-- 161 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li~~~~g~~~i-~~i~~~------~g~~~fr~~e~~vl~~l~-- 161 (277)
++..|+|+|++||||||+++.|++.+ ++.+++.|.++..... ... ...+.. .....+.+.-...+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~ 98 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESE-IETDKNGFLQYDVLEALNMEKMMSAISCWMESARHS 98 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGG-SCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhH-hhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCC
Confidence 46789999999999999999999988 8999999987643211 000 000100 000011110011112111
Q ss_pred ---------hcCcEEEEecCCccccchhhHHhh-cccEEEEecCCcceecc-cCCCCCh----hHHH----HHHHHHhhc
Q 023776 162 ---------SMGRLVVCAGNGAVQSSANLALLR-HGISLWIDVPPGMVARM-DHSGFPE----SELF----ALYKEMRDG 222 (277)
Q Consensus 162 ---------~~~~~VIa~g~g~v~~~~~~~~L~-~~~vV~L~~~~e~l~~R-~~R~l~~----~~l~----~~~~~r~~~ 222 (277)
.....||.+|. .... ...... .+.+|||++|.+++.+| ..|+++. +.+. ..+..+...
T Consensus 99 ~~~~~~~~~~~~~~vi~eg~--~~~~-~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~~~~~~~~~ 175 (207)
T 2qt1_A 99 VVSTDQESAEEIPILIIEGF--LLFN-YKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQE 175 (207)
T ss_dssp SCCC-----CCCCEEEEECT--TCTT-CGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHHHHHHHHHH
T ss_pred CcCCCeeecCCCCEEEEeeh--HHcC-cHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhHHHHHHHHH
Confidence 01345666652 2221 112222 57899999999999988 4565422 2232 122223233
Q ss_pred cc-cccee--eeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 223 YA-TADVT--VSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 223 y~-~Ad~v--Id~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++ .+|.+ ||+ +.+++++..+|.+.+..
T Consensus 176 ~~~~~~~v~~Id~-------------~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 176 MQDITWEVVYLDG-------------TKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp GGGCSSCCEEEET-------------TSCHHHHHHHHHHHHTT
T ss_pred HHhcCCeEEEecC-------------CCCHHHHHHHHHHHHHh
Confidence 33 36755 776 47899999999888753
No 79
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.22 E-value=4.1e-11 Score=104.97 Aligned_cols=160 Identities=13% Similarity=0.095 Sum_probs=83.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh--hhccCcchhhhhcCChhHHHHhhhhhh------h-hhhHHHHHH----HH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY--YYFDSDSLVFEAAGGESAAKAFRESDE------K-GYQQAETEV----LK 158 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~--~~iD~D~li~~~~g~~~i~~i~~~~g~------~-~fr~~e~~v----l~ 158 (277)
++..|+|.|++||||||+++.|++.|+. .++....-.....| ..+.+++..... . .|....... +.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g-~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~ 103 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTG-EEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVI 103 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHH-HHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchH-HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998864 33222110000011 112222211100 0 010000000 11
Q ss_pred HhhhcCcEEEEe----------cCCccccchhhHHh--------hcccEEEEecCCcceecc-cCCC--C---Chh---H
Q 023776 159 QLSSMGRLVVCA----------GNGAVQSSANLALL--------RHGISLWIDVPPGMVARM-DHSG--F---PES---E 211 (277)
Q Consensus 159 ~l~~~~~~VIa~----------g~g~v~~~~~~~~L--------~~~~vV~L~~~~e~l~~R-~~R~--l---~~~---~ 211 (277)
.....+..||+. |.+--+.......+ .++.+|||++|++++.+| ..|+ . ..+ .
T Consensus 104 ~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R~~~~dr~e~~~~~~ 183 (229)
T 4eaq_A 104 PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKF 183 (229)
T ss_dssp HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC-----CCCHHHHHH
T ss_pred HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCCccchhhhhHHH
Confidence 112345667776 43222222221111 257899999999999999 4442 1 111 1
Q ss_pred HH---HHHHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 212 LF---ALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 212 l~---~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+. +.|.+....|...-++||. +.+++++.++|.+.|..++.
T Consensus 184 ~~rv~~~y~~l~~~~~~~~~vIDa-------------~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 184 HEKVIEGYQEIIHNESQRFKSVNA-------------DQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp HHHHHHHHHHHTTTCTTTEEEEET-------------TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHhc
Confidence 12 2222222222212367886 58999999999999987653
No 80
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.20 E-value=7.1e-12 Score=110.98 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=66.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchhhh---------hcCChhHHHHhhhhhhhhhhHHHHHHHHH
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVFE---------AAGGESAAKAFRESDEKGYQQAETEVLKQ 159 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li~~---------~~g~~~i~~i~~~~g~~~fr~~e~~vl~~ 159 (277)
-++..|+|+|+|||||||+|+.|++.++ +.++|.|.+... ..| ..+.+++.. .+......++..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g-~~~~~~~~~----~~~~~~~~~~~~ 104 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYG-KDSVEYTKD----FAGKMVESLVTK 104 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCS-STTHHHHHH----HHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcC-chHHHHhhH----HHHHHHHHHHHH
Confidence 4578999999999999999999999987 567899987432 223 222333221 122223344555
Q ss_pred hhhcC-cEEEEecCCcc-ccchhhHHhh-ccc---EEEEecCCcceecc
Q 023776 160 LSSMG-RLVVCAGNGAV-QSSANLALLR-HGI---SLWIDVPPGMVARM 202 (277)
Q Consensus 160 l~~~~-~~VIa~g~g~v-~~~~~~~~L~-~~~---vV~L~~~~e~l~~R 202 (277)
+...+ .+||+.+.+.. ........++ .+. +||+++|++++.+|
T Consensus 105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R 153 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLS 153 (253)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHH
Confidence 55443 56666443322 2223344454 443 56889999999888
No 81
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=3.9e-11 Score=100.53 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=90.2
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhh--hccCcchhhhhcCChhHHHHhhhhhhhhhhHHHH--HHHHHhhhcCcE
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDSDSLVFEAAGGESAAKAFRESDEKGYQQAET--EVLKQLSSMGRL 166 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~--~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~--~vl~~l~~~~~~ 166 (277)
.++.+|+|+|++||||||+++.|+..++.. ++|.|.+......+ ....++.+.+.....-.+. .........+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~ 85 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHG-RIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYF 85 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSS-CCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcc-cccCCccchhhhhHHHHHHHHHHHHHHhccCCe
Confidence 357899999999999999999999876544 78888775432221 1111222211110000000 001111122223
Q ss_pred EEEecCCccccchhhHHhh----cccEEEEecCCcceecc-cCC--CC--ChhHHHHHHHHHhhcccccceeeeHHHHHh
Q 023776 167 VVCAGNGAVQSSANLALLR----HGISLWIDVPPGMVARM-DHS--GF--PESELFALYKEMRDGYATADVTVSLQKVAS 237 (277)
Q Consensus 167 VIa~g~g~v~~~~~~~~L~----~~~vV~L~~~~e~l~~R-~~R--~l--~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~ 237 (277)
++..+ +.....+..+. ...++++.++.+++.+| ..| +. +.+.+..+++.+.+.|..++++|++
T Consensus 86 ~~~~~---~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~lld~~~~~~~~~~~~~l~~~~~~~i~t----- 157 (191)
T 1zp6_A 86 VILDG---VVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLPV----- 157 (191)
T ss_dssp EEECS---CCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSCCCHHHHHHHHHHTTCCGGGGGGEEEC-----
T ss_pred EEEec---cCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCccCCHHHHHHHHHHHhccCcccccEEEC-----
Confidence 33221 11111222222 23579999999999999 333 22 4556667777766666656778876
Q ss_pred HhCCCcccccccchhhHHHHHHHHH
Q 023776 238 QLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 238 ~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|.+.+..
T Consensus 158 -------~~~~~~~~~~~i~~~l~~ 175 (191)
T 1zp6_A 158 -------SGKDTDQALQSAINALQS 175 (191)
T ss_dssp -------TTCCTTTTTTTTHHHHHH
T ss_pred -------CCCCHHHHHHHHHHHHHh
Confidence 467999999999988864
No 82
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.12 E-value=4.2e-11 Score=107.73 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=72.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh-hhhhccCcchhhhhcCChhHH---HHhhhhhhhhhhHHHHHHHHHhh---hcCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL-RYYYFDSDSLVFEAAGGESAA---KAFRESDEKGYQQAETEVLKQLS---SMGR 165 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD~D~li~~~~g~~~i~---~i~~~~g~~~fr~~e~~vl~~l~---~~~~ 165 (277)
+..|+|+|+|||||||+|+.|++.+ |+.+++.|.+.+...+ .... .+. ..++..+.......+.... ..+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~-~~~g~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~g~ 79 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMA-HEERDEYKYT-KKKEGIVTGMQFDTAKSILYGGDSVK 79 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTT-SCCCC---CC-HHHHHHHHHHHHHHHHHHTTSCTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhcc-CCcccccccc-hhhhhHHHHHHHHHHHHHHhhccCCC
Confidence 4689999999999999999999974 9999999977655443 1100 111 1122222222222333433 3444
Q ss_pred EEEEecCCccccchhhHHh----h-cc---cEEEEecCCcceecc-cCCC---CChhHHHHHHHHH
Q 023776 166 LVVCAGNGAVQSSANLALL----R-HG---ISLWIDVPPGMVARM-DHSG---FPESELFALYKEM 219 (277)
Q Consensus 166 ~VIa~g~g~v~~~~~~~~L----~-~~---~vV~L~~~~e~l~~R-~~R~---l~~~~l~~~~~~r 219 (277)
.||..+.. .....+..+ + .+ .+|||++|.+++.+| ..|+ .+.+.+..+++..
T Consensus 80 ~vi~d~~~--~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~~~e~i~~~~~~~ 143 (301)
T 1ltq_A 80 GVIISDTN--LNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGTKAVPIDVLRSMYKSM 143 (301)
T ss_dssp EEEECSCC--CCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGGGCCCHHHHHHHHHHH
T ss_pred EEEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 55554322 222222222 2 22 689999999999999 4453 4666666665443
No 83
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.10 E-value=7.4e-11 Score=115.31 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=48.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC-----cchhhhhcCChhHHHHhhhhhhhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS-----DSLVFEAAGGESAAKAFRESDEKGYQQAET 154 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~-----D~li~~~~g~~~i~~i~~~~g~~~fr~~e~ 154 (277)
.+.+|+|+|+|||||||+|+.|++.|++.++|+ |.++++..+.....++|...+++.|+..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~ 101 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQ 101 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHH
Confidence 357899999999999999999999999888654 888877766323456777677777665443
No 84
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.10 E-value=9.6e-10 Score=96.53 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=83.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcc---hhhhhcCC---hhHHHHhhhhhhh------hhhHHHHH----
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS---LVFEAAGG---ESAAKAFRESDEK------GYQQAETE---- 155 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~---li~~~~g~---~~i~~i~~~~g~~------~fr~~e~~---- 155 (277)
++..|+|.|++||||||+++.|++.|+..++++.. ..++..+. ..+.+++...... .|...-.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~ 103 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLAL 103 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999877544331 12222220 1223333221000 01111011
Q ss_pred HHHHhhhcCcEEEEecC--------Cc--cccchhhH----H----hhcccEEEEecCCcceecc-cCCC-C---Ch---
Q 023776 156 VLKQLSSMGRLVVCAGN--------GA--VQSSANLA----L----LRHGISLWIDVPPGMVARM-DHSG-F---PE--- 209 (277)
Q Consensus 156 vl~~l~~~~~~VIa~g~--------g~--v~~~~~~~----~----L~~~~vV~L~~~~e~l~~R-~~R~-l---~~--- 209 (277)
.++.....+..||+... +. -++.+... . ..++++|||++|+++..+| ..|+ . ..
T Consensus 104 ~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~~ 183 (227)
T 3v9p_A 104 VIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVRMPDKFESESD 183 (227)
T ss_dssp THHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCCCC---CCHHH
T ss_pred HHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhccCccchhhhhH
Confidence 12222235667887541 10 01111111 1 1267899999999999999 6663 1 11
Q ss_pred hHHHHHHHHHhhc---ccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHH
Q 023776 210 SELFALYKEMRDG---YATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 210 ~~l~~~~~~r~~~---y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~ 262 (277)
+.+..+.+...+. |...-++||. +.+++++.++|.+.|..
T Consensus 184 ef~~rv~~~Y~~la~~~~~~~~vIDa-------------~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 184 AFFARTRAEYLRRAQEAPHRFVIVDS-------------SEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp HHHHHHHHHHHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEeC-------------CCCHHHHHHHHHHHHHh
Confidence 1122222222222 2112467886 58999999999998875
No 85
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.10 E-value=9.5e-10 Score=96.37 Aligned_cols=161 Identities=12% Similarity=0.074 Sum_probs=80.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh-hhccCcchhhhhcCChh----HHHHhhhhhh------h-hhhHHHHHHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-YYFDSDSLVFEAAGGES----AAKAFRESDE------K-GYQQAETEVLKQ 159 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~-~~iD~D~li~~~~g~~~----i~~i~~~~g~------~-~fr~~e~~vl~~ 159 (277)
++..|+|.|++||||||+++.|++.|+. ..++.-.+.++..| .+ +.+++..... . .|...-.+.+++
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~-t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~~~~~ 98 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG-TLLNESVRNLLFKAQGLDSLSELLFFIAMRREHFVK 98 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS-SHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC-ChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999887 43332110112111 22 2223321110 0 111111111222
Q ss_pred ----hhhcCcEEEEecC---Ccc-------ccchhhHH-------hhcccEEEEecCCcceecccCCC-C---ChhH---
Q 023776 160 ----LSSMGRLVVCAGN---GAV-------QSSANLAL-------LRHGISLWIDVPPGMVARMDHSG-F---PESE--- 211 (277)
Q Consensus 160 ----l~~~~~~VIa~g~---g~v-------~~~~~~~~-------L~~~~vV~L~~~~e~l~~R~~R~-l---~~~~--- 211 (277)
....+..||+... +.+ ++.+.... .+++++|||++|+++..+|.+|. + +.+.
T Consensus 99 ~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rdr~E~~~~e~~~r 178 (223)
T 3ld9_A 99 IIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKNGYEFADMEFYYR 178 (223)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC----------------CHHHHHH
T ss_pred HHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccCccccchHHHHHH
Confidence 2234667787541 000 11111111 14789999999999999984222 1 1222
Q ss_pred HHHHHHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHHHH
Q 023776 212 LFALYKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTRKK 267 (277)
Q Consensus 212 l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~~~ 267 (277)
+.+.|.+....|....++||. +.+++++ ++|.+.|..++.+-
T Consensus 179 v~~~y~~la~~~~~~~~vIDa-------------~~sieeV-~~I~~~l~~~lg~~ 220 (223)
T 3ld9_A 179 VRDGFYDIAKKNPHRCHVITD-------------KSETYDI-DDINFVHLEVIKVL 220 (223)
T ss_dssp HHHHHHHHHHHCTTTEEEEES-------------SCSSSCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEcC-------------CCCHHHH-HHHHHHHHHHHhhh
Confidence 233333322223224578886 5899999 99999999887654
No 86
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.04 E-value=1.3e-09 Score=96.25 Aligned_cols=160 Identities=15% Similarity=0.180 Sum_probs=87.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChh----HHHHhhhh-h-h------h--hhhHHHHHH-
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES----AAKAFRES-D-E------K--GYQQAETEV- 156 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~----i~~i~~~~-g-~------~--~fr~~e~~v- 156 (277)
++..|+|.|++||||||+++.|++.|+...++.-.+.++..| .. +.+++... + . + .|...-.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~-t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~ 104 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG-TLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLV 104 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS-SHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC-CHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999998766652222223222 22 22333210 0 0 0 011111111
Q ss_pred ---HHHhhhcCcEEEEecC--------Cc--cccchhhH----H----hhcccEEEEecCCcceecc-cCCCC----C--
Q 023776 157 ---LKQLSSMGRLVVCAGN--------GA--VQSSANLA----L----LRHGISLWIDVPPGMVARM-DHSGF----P-- 208 (277)
Q Consensus 157 ---l~~l~~~~~~VIa~g~--------g~--v~~~~~~~----~----L~~~~vV~L~~~~e~l~~R-~~R~l----~-- 208 (277)
+......+..||+... |. -++.+... . +.++++|||++|+++..+| ..|+- .
T Consensus 105 ~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~ 184 (236)
T 3lv8_A 105 ENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGELDRIEKM 184 (236)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-----CCCTTTTS
T ss_pred HHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcchhhhh
Confidence 2222235667887641 11 01111111 1 1368999999999999999 55531 1
Q ss_pred -hhHHHHHHHHHhhccc-c-cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 209 -ESELFALYKEMRDGYA-T-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 209 -~~~l~~~~~~r~~~y~-~-Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.+.+..+.+......+ . ..++||. +.+++++.++|.+.|..++.
T Consensus 185 ~~~~~~rv~~~y~~la~~~~~~~vIDa-------------~~sieeV~~~I~~~l~~~l~ 231 (236)
T 3lv8_A 185 DISFFERARERYLELANSDDSVVMIDA-------------AQSIEQVTADIRRALQDWLS 231 (236)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTEEEEET-------------TSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEeC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 1222222222222222 1 2477886 58999999999999987653
No 87
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.02 E-value=2.5e-09 Score=92.83 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=87.2
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCC---hhHHHHhhhhh-----h----hhhhHHHH----
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGG---ESAAKAFRESD-----E----KGYQQAET---- 154 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~---~~i~~i~~~~g-----~----~~fr~~e~---- 154 (277)
.++..|+|.|++||||||+++.|++.|+...++.- ..++..+. ..+.+++.... . ..|...-.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~-~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~ 82 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ-LTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA 82 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE-EEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc-cccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999875433321 11111110 12233322110 0 00111001
Q ss_pred HHHHHhhhcCcEEEEecC--------Cc--cccchhhHH--------hhcccEEEEecCCcceecc-cCCC---CCh---
Q 023776 155 EVLKQLSSMGRLVVCAGN--------GA--VQSSANLAL--------LRHGISLWIDVPPGMVARM-DHSG---FPE--- 209 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g~--------g~--v~~~~~~~~--------L~~~~vV~L~~~~e~l~~R-~~R~---l~~--- 209 (277)
+++......+..||+... +. -++.+.... ..++++|||++|+++..+| ..|+ ..+
T Consensus 83 ~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~ 162 (213)
T 4edh_A 83 GVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGRLDRFEQED 162 (213)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSC
T ss_pred HHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCCcCcccccH
Confidence 112222235667787541 11 011111111 1267899999999999999 5553 111
Q ss_pred -hHHHHH---HHHHhhcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 210 -SELFAL---YKEMRDGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 210 -~~l~~~---~~~r~~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+.+..+ |......|...-++||. +.+++++.++|.+.|..++.
T Consensus 163 ~~~~~rv~~~y~~l~~~~~~~~~vIDa-------------~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4edh_A 163 RRFFEAVRQTYLQRAAQAPERYQVLDA-------------GLPLAEVQAGLDRLLPNLLE 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEeC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 222222 22222222223478886 58999999999999987764
No 88
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.02 E-value=4.4e-10 Score=99.66 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=27.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~~iD 123 (277)
+++.|+|.|++||||||+++.|++.| ++.++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 56899999999999999999999998 565553
No 89
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.98 E-value=1.6e-09 Score=93.55 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=79.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchhhhhcCC---hhHHHHhhhhhh-------hhhhH-----HHHH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVFEAAGG---ESAAKAFRESDE-------KGYQQ-----AETE 155 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li~~~~g~---~~i~~i~~~~g~-------~~fr~-----~e~~ 155 (277)
+..|+|.|+.||||||+++.|++.|. +.++-+ ++..|. ..+.+++..... .-|.. .+..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~----~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~ 77 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT----REPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLK 77 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE----ESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe----eCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999883 222210 111110 112222211100 00111 1111
Q ss_pred HHHHhhhcCcEEEEecC--------Ccc--ccchhhH--------HhhcccEEEEecCCcceecc-cCCCC--C---hhH
Q 023776 156 VLKQLSSMGRLVVCAGN--------GAV--QSSANLA--------LLRHGISLWIDVPPGMVARM-DHSGF--P---ESE 211 (277)
Q Consensus 156 vl~~l~~~~~~VIa~g~--------g~v--~~~~~~~--------~L~~~~vV~L~~~~e~l~~R-~~R~l--~---~~~ 211 (277)
+... ...+..||+... |.. ++.+... .+.++++|||++|+++..+| .+|+. + .+.
T Consensus 78 i~p~-l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~~~dr~e~~~ 156 (205)
T 4hlc_A 78 VIPA-LKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQED 156 (205)
T ss_dssp HHHH-HHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC-------CCHHH
T ss_pred HHHH-HHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCCcccchhccC
Confidence 1122 245677887542 110 1111111 11268999999999999999 55532 1 111
Q ss_pred ---HHHHHHHHhhccc-ccc--eeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 212 ---LFALYKEMRDGYA-TAD--VTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 212 ---l~~~~~~r~~~y~-~Ad--~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
++.+.+......+ ..+ .+||. +.+++++.++|.+.|.+++.
T Consensus 157 ~~f~~~v~~~Y~~l~~~~~~~~~~IDa-------------~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 157 LKFHEKVIEGYQEIIHNESQRFKSVNA-------------DQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEET-------------TSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEC-------------CCCHHHHHHHHHHHHHHHHh
Confidence 1122221112211 122 56775 58999999999999987754
No 90
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.97 E-value=1.7e-10 Score=102.36 Aligned_cols=105 Identities=9% Similarity=0.005 Sum_probs=64.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh--h-cCC-hh-------HH-------HHhh-hhhhhhhhHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE--A-AGG-ES-------AA-------KAFR-ESDEKGYQQAET 154 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~--~-~g~-~~-------i~-------~i~~-~~g~~~fr~~e~ 154 (277)
++|+|+|++||||||+|+.||+.+++.+++.|.+... . .+. .+ ++ +... ..+...|.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 4789999999999999999999999999999987521 1 000 00 00 0011 133345665555
Q ss_pred HHHHHhhhcCcEEEEecCCccccchhhHHhh-----cc---cEEEEecCC-cceecc
Q 023776 155 EVLKQLSSMGRLVVCAGNGAVQSSANLALLR-----HG---ISLWIDVPP-GMVARM 202 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~-----~~---~vV~L~~~~-e~l~~R 202 (277)
..+ ++...+..+|.+|++... ....+. .+ .+|||++|. +++.+|
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~---~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~R 134 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISL---LNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTR 134 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHH---HHHHHHCTTTTSSCEEEEEECCCCCHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHH---HHHHHhcccccccCceEEEEecchhHHHHHHH
Confidence 555 555455555554443221 111221 12 689999998 999888
No 91
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.96 E-value=4.9e-10 Score=106.43 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=73.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcCcEEEEec
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMGRLVVCAG 171 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~~~VIa~g 171 (277)
.+..|+|+|+|||||||+|+.|++.+|+.++|.|.+. .|..+...+...+.....+|+.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~~ 317 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------SWQRCVSSCQAALRQGKRVVIDNT 317 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------SHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------------------HHHHHHHHHHHHHhcCCcEEEeCC
Confidence 4678999999999999999999999999999998861 011222222333333334555543
Q ss_pred CCccccc-hhhHHhh-cc---cEEEEecCCcceecc-cCC--------CCChhHHHHHHHHHhhccc--ccceeeeH
Q 023776 172 NGAVQSS-ANLALLR-HG---ISLWIDVPPGMVARM-DHS--------GFPESELFALYKEMRDGYA--TADVTVSL 232 (277)
Q Consensus 172 ~g~v~~~-~~~~~L~-~~---~vV~L~~~~e~l~~R-~~R--------~l~~~~l~~~~~~r~~~y~--~Ad~vId~ 232 (277)
....... ..++.++ .+ .+|||++|.+++.+| ..| ..+++.+..+.....+.-. .-|.++..
T Consensus 318 ~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~~~~~~~~~~~~~e~P~~~E~fd~v~~v 394 (416)
T 3zvl_A 318 NPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEI 394 (416)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHCCCCCGGGTCSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHhcCCCCcccCCcEEEEE
Confidence 2221111 1222333 23 689999999999999 333 2345556666555444322 24555554
No 92
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.95 E-value=2.8e-09 Score=92.55 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=86.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc-cCcchhhhhcCC---hhHHHHhhhhh----hh--------hhhHHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF-DSDSLVFEAAGG---ESAAKAFRESD----EK--------GYQQAETE 155 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i-D~D~li~~~~g~---~~i~~i~~~~g----~~--------~fr~~e~~ 155 (277)
++..|+|.|++||||||+++.|++.|.-..+ +. .+.++..|. ..+.+++.... .. -|.....+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v-~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~ 80 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDM-VFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQ 80 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCE-EEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcc-eeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHH
Confidence 4789999999999999999999999876554 22 122222220 12333332100 00 01111111
Q ss_pred H----HHHhhhcCcEEEEecC--------Cc--cccchhh---HH-----hhcccEEEEecCCcceecc-cCCC----CC
Q 023776 156 V----LKQLSSMGRLVVCAGN--------GA--VQSSANL---AL-----LRHGISLWIDVPPGMVARM-DHSG----FP 208 (277)
Q Consensus 156 v----l~~l~~~~~~VIa~g~--------g~--v~~~~~~---~~-----L~~~~vV~L~~~~e~l~~R-~~R~----l~ 208 (277)
. +......+..||+... |. -+..+.. .. ..++++|||++|+++..+| ..|+ +.
T Consensus 81 ~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E 160 (213)
T 4tmk_A 81 LVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE 160 (213)
T ss_dssp HHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHSSCCTTT
T ss_pred HHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCCccchh
Confidence 1 2222245678887541 10 0111111 11 1368999999999999998 4442 11
Q ss_pred ---hhHHHHHHHHHhhccc--ccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 209 ---ESELFALYKEMRDGYA--TADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 209 ---~~~l~~~~~~r~~~y~--~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
.+.+..+.+......+ ..-.+||. +.+++++..+|.+.|..++.
T Consensus 161 ~~~~~f~~rv~~~y~~la~~~~~~~vIDa-------------~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 161 QESFDFFNRTRARYLELAAQDKSIHTIDA-------------TQPLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCTTEEEEET-------------TSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCcEEEECC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 1222222222211111 12367876 58999999999999988763
No 93
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.94 E-value=2.9e-10 Score=109.46 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=48.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcc-----hhhhhcCChhHHHHhhhhhhhhhhHHHHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDS-----LVFEAAGGESAAKAFRESDEKGYQQAETEVL 157 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~-----li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl 157 (277)
.+.+|+|+|+|||||||+++.|++.+++.++|+|. +.++..|.....++|...|+..++..+..++
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~ 108 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCAL 108 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999888876 4455444212346777778766665555433
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.93 E-value=4.7e-09 Score=89.29 Aligned_cols=38 Identities=24% Similarity=0.130 Sum_probs=34.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~li~ 129 (277)
++..|+|+|++||||||+++.|+..++ +.+++.|..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 467899999999999999999999888 88898887664
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.93 E-value=1.2e-09 Score=93.79 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=38.8
Q ss_pred ccEEEEecC-Ccceecc-cCCCC-ChhHHHHHHHHHh---hcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHH
Q 023776 187 GISLWIDVP-PGMVARM-DHSGF-PESELFALYKEMR---DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEI 260 (277)
Q Consensus 187 ~~vV~L~~~-~e~l~~R-~~R~l-~~~~l~~~~~~r~---~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i 260 (277)
..+||+..| .+++.+| ..|+. +.+.+...++... ..+..+|++|.++ ++++++.+|...|
T Consensus 121 ~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~~~d~vivN~--------------~~~~~~~~l~~~i 186 (208)
T 3tau_A 121 GIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVND--------------VVANAVQKIKGIV 186 (208)
T ss_dssp SEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGGGSSEEEECS--------------SHHHHHHHHHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccCCEEEECc--------------CHHHHHHHHHHHH
Confidence 367888766 8899999 67753 4455554443322 2334579888762 5888888888888
Q ss_pred HHH
Q 023776 261 EKL 263 (277)
Q Consensus 261 ~~~ 263 (277)
...
T Consensus 187 ~~~ 189 (208)
T 3tau_A 187 ETE 189 (208)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 96
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.91 E-value=1.3e-09 Score=95.53 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=34.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
++..|+|+|++||||||+++.|++.+|+..++.|.++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 357999999999999999999999999999998877654
No 97
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.90 E-value=2.5e-09 Score=96.65 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh--hhhhccCcchhhhhcCChhHHHHhhhh----hhhhhhHHHHHHHHHhhhcC
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL--RYYYFDSDSLVFEAAGGESAAKAFRES----DEKGYQQAETEVLKQLSSMG 164 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L--g~~~iD~D~li~~~~g~~~i~~i~~~~----g~~~fr~~e~~vl~~l~~~~ 164 (277)
-++..|+|+|+|||||||+++.|++.+ ++.++|+|.+.....+...+..-+... ....+.......+..+...+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g 110 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQG 110 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcC
Confidence 357899999999999999999999988 788999988765433311110001110 11223333334445544444
Q ss_pred c-EEEEecCCccc-cchhhHHhh-cc---cEEEEecCCcce----ecc
Q 023776 165 R-LVVCAGNGAVQ-SSANLALLR-HG---ISLWIDVPPGMV----ARM 202 (277)
Q Consensus 165 ~-~VIa~g~g~v~-~~~~~~~L~-~~---~vV~L~~~~e~l----~~R 202 (277)
. +|+........ .....+.++ .+ .++|+.+|++.+ .+|
T Consensus 111 ~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R 158 (287)
T 1gvn_B 111 YNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER 158 (287)
T ss_dssp CCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence 4 55543222111 112233343 23 368999999998 777
No 98
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.88 E-value=2.7e-09 Score=103.99 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=69.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh-------hhccCcchhhhhcCChhHHHHhhhhhhhhhhHHHHHHHHHhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY-------YYFDSDSLVFEAAGGESAAKAFRESDEKGYQQAETEVLKQLSSMG 164 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~-------~~iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e~~vl~~l~~~~ 164 (277)
.+.+|+|+|++||||||||+.||++|+. .++|.|. .+ + ..+ ++..+...+
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-----~~-----e-------i~~------va~~~~~~G 450 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-----KT-----E-------LLS------LIQDFIGSG 450 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-----CH-----H-------HHT------THHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-----cH-----H-------HHH------HHHHHHhcC
Confidence 4689999999999999999999999996 6888887 11 0 111 223333344
Q ss_pred cEEEEecCCccccchhhHHhhcccEEEEecCCcceecccCCCCChhHHHHHHHHHhhcccccceeeeHHHHHhHhCCCcc
Q 023776 165 RLVVCAGNGAVQSSANLALLRHGISLWIDVPPGMVARMDHSGFPESELFALYKEMRDGYATADVTVSLQKVASQLGYDDL 244 (277)
Q Consensus 165 ~~VIa~g~g~v~~~~~~~~L~~~~vV~L~~~~e~l~~R~~R~l~~~~l~~~~~~r~~~y~~Ad~vId~~~~a~~~~~~dt 244 (277)
..||++... . ..+|+.++.+.+++|. .+..++++||+
T Consensus 451 ~~Vv~~~~s-p--~~~R~~l~~g~fv~v~----------------------------~p~~adI~IDT------------ 487 (511)
T 1g8f_A 451 SGLIIPDQW-E--DDKDSVVGKQNVYLLD----------------------------TSSSADIQLES------------ 487 (511)
T ss_dssp CEEEESSCC-C--GGGGGGSCCTTEEEEE----------------------------SSTTCSEECSS------------
T ss_pred CeEEEecCC-H--HHHHHHhcCCCEEEEe----------------------------cCCCCcEEEEC------------
Confidence 444443110 0 2445555434445554 23457899986
Q ss_pred cccccchhhHHHHHHHHH
Q 023776 245 DAVTTEDMTLEVLKEIEK 262 (277)
Q Consensus 245 s~~t~eeva~~Il~~i~~ 262 (277)
++.++++++++|++.+..
T Consensus 488 s~~s~eevV~~Il~~L~~ 505 (511)
T 1g8f_A 488 ADEPISHIVQKVVLFLED 505 (511)
T ss_dssp TTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 578999999999998864
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.88 E-value=4.9e-09 Score=92.00 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=26.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
++.+|+|+|++||||||+++.|+..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 56899999999999999999999988876
No 100
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.86 E-value=3.1e-08 Score=86.23 Aligned_cols=158 Identities=11% Similarity=0.162 Sum_probs=84.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChh----HHHHhhhhh--hh------hhhHHHH---HH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES----AAKAFRESD--EK------GYQQAET---EV 156 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~----i~~i~~~~g--~~------~fr~~e~---~v 156 (277)
++..|+|.|++||||||+++.|++.|+.. .+ +..+..++.+ +.+++.... .. .|...-. +.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~---~~-~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~~~ 79 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN---CK-LLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDK 79 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS---EE-EEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc---ce-EEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998852 11 1122211122 233332111 00 1110000 11
Q ss_pred HHHhhhcCcEEEEecC---Ccc------ccchhhHH--------hhcccEEEE-ecCCcceecc-cCCC--C-Chh---H
Q 023776 157 LKQLSSMGRLVVCAGN---GAV------QSSANLAL--------LRHGISLWI-DVPPGMVARM-DHSG--F-PES---E 211 (277)
Q Consensus 157 l~~l~~~~~~VIa~g~---g~v------~~~~~~~~--------L~~~~vV~L-~~~~e~l~~R-~~R~--l-~~~---~ 211 (277)
+......+..||+... +.+ +.....+. .+++++||| ++|+++..+| ..|+ + ..+ .
T Consensus 80 I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~dr~E~~~f~~r 159 (216)
T 3tmk_A 80 IKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERYETVKFQEK 159 (216)
T ss_dssp HHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCCTTCCHHHHHH
T ss_pred HHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcccccHHHHHHH
Confidence 2222245667887541 000 11111111 126899999 9999999999 3321 2 111 2
Q ss_pred HHHHHHHHhhc---ccc-cceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHHHH
Q 023776 212 LFALYKEMRDG---YAT-ADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKLTR 265 (277)
Q Consensus 212 l~~~~~~r~~~---y~~-Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~~~ 265 (277)
+.+.|.+.... |.. .-.+||+ .+.++++|.++|.+.|...+.
T Consensus 160 vr~~Y~~la~~~~~~~~~~~~vID~------------a~~s~eeV~~~I~~~i~~~l~ 205 (216)
T 3tmk_A 160 VKQTFMKLLDKEIRKGDESITIVDV------------TNKGIQEVEALIWQIVEPVLS 205 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEEC------------TTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCCEEEEeC------------CCCCHHHHHHHHHHHHHHHHh
Confidence 22223222211 111 2367772 268999999999999988764
No 101
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=3.3e-09 Score=89.47 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=40.0
Q ss_pred cEEEEec-CCcceecc-cCCCC-ChhHHHHHHHHHh---hcccccceeeeHHHHHhHhCCCcccccccchhhHHHHHHHH
Q 023776 188 ISLWIDV-PPGMVARM-DHSGF-PESELFALYKEMR---DGYATADVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIE 261 (277)
Q Consensus 188 ~vV~L~~-~~e~l~~R-~~R~l-~~~~l~~~~~~r~---~~y~~Ad~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~ 261 (277)
.+||+.. |.+++.+| ..|+. +++.+...+.... ..+..+|++|++ + +++++..++.+.|.
T Consensus 120 ~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vi~n-------------~-~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 120 LSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVN-------------D-NFDQAVQNLIHIIS 185 (205)
T ss_dssp EEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTGGGCSEEEEC-------------S-SHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccCCCEEEEC-------------C-CHHHHHHHHHHHHH
Confidence 5677766 57888888 66643 4444444333322 233458999986 3 78899999988886
Q ss_pred H
Q 023776 262 K 262 (277)
Q Consensus 262 ~ 262 (277)
.
T Consensus 186 ~ 186 (205)
T 3tr0_A 186 A 186 (205)
T ss_dssp H
T ss_pred H
Confidence 4
No 102
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.83 E-value=2.5e-09 Score=96.93 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=31.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~li~ 129 (277)
++..|+|+|++||||||+++.|++.+| +.++|+|.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 356899999999999999999999998 78899999875
No 103
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.78 E-value=1.1e-08 Score=86.13 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999865
No 104
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.78 E-value=1.8e-08 Score=86.26 Aligned_cols=154 Identities=17% Similarity=0.096 Sum_probs=76.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChhH----HHHhhhhh-----h-hhhh----HHHHHHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGESA----AKAFRESD-----E-KGYQ----QAETEVLKQ 159 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~i----~~i~~~~g-----~-~~fr----~~e~~vl~~ 159 (277)
+.|+|.|+.||||||+++.|++.|.-.-++.- ..++..| ..+ ..+..... . ..|. .....+...
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~-~treP~~-t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~ 78 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI-LKREPGG-TETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQY 78 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE-EEESSCS-SHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEE-EEECCCC-CcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999998853322210 0111111 111 11111100 0 0011 111112222
Q ss_pred hhhcCcEEEEecC----------CccccchhhHH--------hhcccEEEEecCCcceecc-cCCCC--ChhHHHHHHHH
Q 023776 160 LSSMGRLVVCAGN----------GAVQSSANLAL--------LRHGISLWIDVPPGMVARM-DHSGF--PESELFALYKE 218 (277)
Q Consensus 160 l~~~~~~VIa~g~----------g~v~~~~~~~~--------L~~~~vV~L~~~~e~l~~R-~~R~l--~~~~l~~~~~~ 218 (277)
...+..||+... +.-...+.... +.++++|||++|+++..+| ..|.. ..+.+..+.+.
T Consensus 79 -L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ef~~rv~~~ 157 (197)
T 3hjn_A 79 -LSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLERVREG 157 (197)
T ss_dssp -HTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCHHHHHHHHHH
T ss_pred -HHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccHHHHHHHHHH
Confidence 245667887542 00011111111 1268999999999999998 43432 22222222221
Q ss_pred Hhhccc-cc--ceeeeHHHHHhHhCCCcccccccchhhHHHHHHHHHH
Q 023776 219 MRDGYA-TA--DVTVSLQKVASQLGYDDLDAVTTEDMTLEVLKEIEKL 263 (277)
Q Consensus 219 r~~~y~-~A--d~vId~~~~a~~~~~~dts~~t~eeva~~Il~~i~~~ 263 (277)
.....+ .. -.+||. +.++++|.++|++.|++.
T Consensus 158 y~~la~~~~~~~~~IDa-------------~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 158 YLVLAREHPERIVVLDG-------------KRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHCTTTEEEEET-------------TSCHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCEEEEcC-------------CCCHHHHHHHHHHHHHHH
Confidence 111111 12 256775 589999999999988753
No 105
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.77 E-value=2.6e-09 Score=98.44 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=60.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhhhcCChh--------------------HHHHhhhhhhhhhhHH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFEAAGGES--------------------AAKAFRESDEKGYQQA 152 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~~~g~~~--------------------i~~i~~~~g~~~fr~~ 152 (277)
+..|+|+|++||||||+|+.||+.+++.++++|.+.... | .+ +.+.+..++...|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~-~-~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~ 82 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYR-G-MDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRAD 82 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBT-T-CCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhc-C-CCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHH
Confidence 358999999999999999999999999999999874221 1 11 1223344566778888
Q ss_pred HHHHHHHhhhcCcEEEEecCCc
Q 023776 153 ETEVLKQLSSMGRLVVCAGNGA 174 (277)
Q Consensus 153 e~~vl~~l~~~~~~VIa~g~g~ 174 (277)
+...+.++...+..+|.+||+.
T Consensus 83 a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 83 ALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp HHHHHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHHHHHcCCeEEEECCch
Confidence 8888888877778888888754
No 106
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.76 E-value=8e-09 Score=89.84 Aligned_cols=66 Identities=11% Similarity=0.177 Sum_probs=30.9
Q ss_pred cccEEEEecCCcceecc-cCCCCCh---------hHHHHHHHHHhhcc--c-ccc-eeeeHHHHHhHhCCCcccccccch
Q 023776 186 HGISLWIDVPPGMVARM-DHSGFPE---------SELFALYKEMRDGY--A-TAD-VTVSLQKVASQLGYDDLDAVTTED 251 (277)
Q Consensus 186 ~~~vV~L~~~~e~l~~R-~~R~l~~---------~~l~~~~~~r~~~y--~-~Ad-~vId~~~~a~~~~~~dts~~t~ee 251 (277)
++++|||++|+|++.+| ..|+.+. +.+...+.+....| . .++ ++||. +.++++
T Consensus 147 pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~-------------~~~~ee 213 (230)
T 2vp4_A 147 ADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDA-------------DLNLEN 213 (230)
T ss_dssp CSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEEC-------------CC----
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEEC-------------CCCHHH
Confidence 57899999999999999 4444321 22444455543333 2 244 78886 579999
Q ss_pred hhHHHHHHHHHHH
Q 023776 252 MTLEVLKEIEKLT 264 (277)
Q Consensus 252 va~~Il~~i~~~~ 264 (277)
+.++|.+.+....
T Consensus 214 v~~~I~~~l~~~~ 226 (230)
T 2vp4_A 214 IGTEYQRSESSIF 226 (230)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.75 E-value=1.2e-08 Score=85.41 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=24.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+++..|+|+|++||||||+++.|+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999998865
No 108
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.75 E-value=3.1e-09 Score=99.13 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=56.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhh--------------------ccCcchhhhhcCChhHHHHhhhhhhhhhhHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYY--------------------FDSDSLVFEAAGGESAAKAFRESDEKGYQQAE 153 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~--------------------iD~D~li~~~~g~~~i~~i~~~~g~~~fr~~e 153 (277)
.+|+|+|+|||||||+++.|+..+++.| +|.|..+++..| +++.++|...|+ .|+..|
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g-~~i~~if~~~ge-~fr~~E 102 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQP-NKVAEMIENQGL-FKDHVE 102 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCH-HHHHHHHHTTTC-CGGGTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhC-ccHHHHHHHhcc-cchHHH
Confidence 5699999999999999999999999999 999999999888 899999999999 999987
Q ss_pred HHHH
Q 023776 154 TEVL 157 (277)
Q Consensus 154 ~~vl 157 (277)
...+
T Consensus 103 ~~~~ 106 (359)
T 2ga8_A 103 DVNF 106 (359)
T ss_dssp CTTC
T ss_pred hhhc
Confidence 6543
No 109
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.70 E-value=7.8e-09 Score=95.90 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=62.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcch--hhhhc-C----------Ch-----hHHHHhhhhhhhhhhHHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEAA-G----------GE-----SAAKAFRESDEKGYQQAETE 155 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l--i~~~~-g----------~~-----~i~~i~~~~g~~~fr~~e~~ 155 (277)
..|+|+|++||||||+|+.|++.++..+++.|.+ ....- + +. .+.+.....+...|......
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~~ 87 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEK 87 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHHH
Confidence 5899999999999999999999999999999987 22210 0 00 01111122334456666666
Q ss_pred HHHHhhhcCcEEEEecCCccccchhhHHhhcccEEEEe-cCCc
Q 023776 156 VLKQLSSMGRLVVCAGNGAVQSSANLALLRHGISLWID-VPPG 197 (277)
Q Consensus 156 vl~~l~~~~~~VIa~g~g~v~~~~~~~~L~~~~vV~L~-~~~e 197 (277)
.+..+...+..+|..||...... .+..++.+|.+ ++.+
T Consensus 88 ~i~~i~~~g~~~IlvGGt~ly~~----~l~~~l~~~~~~~d~~ 126 (340)
T 3d3q_A 88 YIKDITRRGKVPIIAGGTGLYIQ----SLLYNYAFEDESISED 126 (340)
T ss_dssp HHHHHHHTTCEEEEECCCHHHHH----HHHBCSCCC---CCHH
T ss_pred HHHHHHhCCCcEEEECChhhhHH----HHHhcccccCCCCChH
Confidence 66666656667777776543322 23335557777 7776
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.69 E-value=3e-08 Score=84.73 Aligned_cols=28 Identities=32% Similarity=0.213 Sum_probs=25.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
-++..|+|+|++||||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999998775
No 111
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.68 E-value=1.4e-07 Score=82.16 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYY 120 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~ 120 (277)
+++.|+|.|++||||||+++.|++.| ++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~~~ 30 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCCCe
Confidence 36789999999999999999999998 443
No 112
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.66 E-value=4.5e-08 Score=83.26 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=24.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||+++.|+..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999876
No 113
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.59 E-value=2.7e-08 Score=83.48 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+..|+|+|++||||||+.+.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36789999999999999999997654
No 114
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.50 E-value=1.6e-07 Score=85.48 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=29.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-------hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-------YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-------~~~iD~D~l 127 (277)
++.+|+|+|++||||||+++.|+..++ +.+++.|..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 568999999999999999999998776 455666654
No 115
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.46 E-value=1.8e-07 Score=80.85 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=17.8
Q ss_pred cceeEEEeeccchHHhhhhHHHH-hhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA-DAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA-~~L 117 (277)
++..|+|+|++||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 57899999999999999999999 654
No 116
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.46 E-value=2e-08 Score=85.16 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+.|+|+|++||||||+++.|++.|+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36899999999999999999998864
No 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.45 E-value=2.3e-08 Score=88.55 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=29.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhccCcchh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li 128 (277)
..|.|+|++||||||+++.|++.+|++++.....+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~ 36 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI 36 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence 57999999999999999999998898877655433
No 118
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.15 E-value=3.7e-06 Score=72.41 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=30.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---hhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---YYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~~~iD~D~li~ 129 (277)
+..+|+|+|++||||+|+|+.|.+.+| ++.+...+.++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 557899999999999999999988785 55566555454
No 119
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.13 E-value=2.9e-06 Score=77.50 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=24.8
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
-++.+|+|+|++||||||+++.|+..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3678999999999999999999998664
No 120
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.13 E-value=2.9e-06 Score=72.01 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.|+|+||+|||||||.+.|.+.+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998765
No 121
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.10 E-value=2.5e-06 Score=78.26 Aligned_cols=36 Identities=31% Similarity=0.255 Sum_probs=33.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
+++.|+|+||+||||||++..||+.++..+|++|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 357899999999999999999999999999999986
No 122
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.02 E-value=4.7e-06 Score=71.42 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=25.8
Q ss_pred cccccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 88 STELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 88 ~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++..|+|+||+||||||+.+.|.+.+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3446789999999999999999999998654
No 123
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.02 E-value=4e-06 Score=76.78 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=32.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
.+..|+|+||+||||||++..||+.++..++++|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 357899999999999999999999999999998874
No 124
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.99 E-value=4.5e-06 Score=76.73 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=23.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+.+|+|+|++||||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998775
No 125
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.95 E-value=7.7e-06 Score=77.39 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=51.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch--hhhhc-C----------Ch-----hHHHHhhhhhhhhhhHHHH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL--VFEAA-G----------GE-----SAAKAFRESDEKGYQQAET 154 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l--i~~~~-g----------~~-----~i~~i~~~~g~~~fr~~e~ 154 (277)
...|+|+||+||||||++..|++.++..+|++|.. .+.+- + +. ++.+.-..+....|.+...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46899999999999999999999999999998873 22111 0 00 0001111122334555555
Q ss_pred HHHHHhhhcCcEEEEecC
Q 023776 155 EVLKQLSSMGRLVVCAGN 172 (277)
Q Consensus 155 ~vl~~l~~~~~~VIa~g~ 172 (277)
..+.++...+..+|-.||
T Consensus 82 ~~i~~i~~~g~~pilVGG 99 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGG 99 (409)
T ss_dssp HHHHHHHTTTCEEEEECS
T ss_pred HHHHHHHhcCCCEEEECC
Confidence 667777766776666664
No 126
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.45 E-value=3.7e-05 Score=69.14 Aligned_cols=32 Identities=6% Similarity=-0.126 Sum_probs=27.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..++|.|+||+|||++|+.+|+.+|..++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34678888999999999999999999987754
No 127
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.33 E-value=6.4e-05 Score=65.55 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=29.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVF 129 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~ 129 (277)
+..|+|+|+|||||||+++.++..++.+++ +...+..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~ 83 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 83 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH
Confidence 456999999999999999999998886654 4444433
No 128
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.29 E-value=4.3e-05 Score=69.35 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred eeeeeeecCCceeeeccCCCCCccc--eeeeeccCCch-h---hhhhcccccccc---cceeEEEeeccchHHhhhhHHH
Q 023776 43 LQYSIISRKPRITTRSIADDTTSNT--VTKVAAEDPSF-A---VKKKAADISTEL---KGTSVFLVGMNNAIKTHLGKFL 113 (277)
Q Consensus 43 ~~~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~-~---l~~~~~~~~~~~---~~~~I~L~G~~GSGKSTvak~L 113 (277)
...+...|+.+.+.+.+++++++.. ..++.+|++.. . +...+.+..... .+..++|.|++|+|||++++.+
T Consensus 93 ~~~~~~~r~~~~~~~~~~~~~l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ai 172 (308)
T 2qgz_A 93 TKELVEAQKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAM 172 (308)
T ss_dssp -------CCCCHHHHTEEEESSCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHH
Confidence 3345677777777788888877641 26788888743 1 111222211111 2578999999999999999999
Q ss_pred Hhhhh
Q 023776 114 ADALR 118 (277)
Q Consensus 114 A~~Lg 118 (277)
+..+.
T Consensus 173 a~~~~ 177 (308)
T 2qgz_A 173 AHELS 177 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98665
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.29 E-value=6.3e-05 Score=69.26 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=30.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
.+..|+|+|+||||||++|+.+|+.++.+++..+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4678999999999999999999999998876543
No 130
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.27 E-value=9.2e-05 Score=64.13 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=27.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.+..|+|+|+||+|||++++.++..++.+++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3567999999999999999999999987664
No 131
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.24 E-value=0.00011 Score=65.32 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=24.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
.+..|+|+|+||+|||++|+.+++.++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~ 93 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR 93 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4567999999999999999999998854
No 132
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.24 E-value=7.6e-05 Score=71.39 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=31.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
..+..|+|+|+|||||||+|+.||+.+++.++..|
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 34678999999999999999999999999887655
No 133
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.24 E-value=9.4e-05 Score=70.60 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=33.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.++-|.|.||||||||++|+++|..+|++|+ +...+.....|
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 4678999999999999999999999998875 44455554444
No 134
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.0001 Score=59.87 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=24.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
No 135
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=9.3e-05 Score=70.49 Aligned_cols=42 Identities=24% Similarity=0.265 Sum_probs=33.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc--CcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~g 133 (277)
.++-|+|.||||||||++|+.+|..+|+.|+. ...++....|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 45669999999999999999999999988754 4445544444
No 136
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00013 Score=68.92 Aligned_cols=42 Identities=24% Similarity=0.252 Sum_probs=33.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc--CcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~g 133 (277)
.++-|.|.||||||||.+|+++|..+|+.|+. ...+.....|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 45779999999999999999999999988754 4455555444
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.21 E-value=9.7e-05 Score=66.42 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+||||||++++.++..++..++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999998877654
No 138
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00011 Score=64.78 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..++|.|+||+|||++++.++..++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45779999999999999999999999877643
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.19 E-value=9.3e-05 Score=65.70 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=27.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.+..|+|.|+|||||||+++.++..++..++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 3578999999999999999999999986654
No 140
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0001 Score=70.37 Aligned_cols=42 Identities=24% Similarity=0.257 Sum_probs=33.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.++-|+|.||||||||++|+++|..+|+.|+ +...++....|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 4578999999999999999999999998875 44455544444
No 141
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.17 E-value=8.2e-05 Score=61.36 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=26.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~l 127 (277)
++..++|+|++||||||+++.+.. |...++.|.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~ 41 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFC 41 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHH
Confidence 578999999999999999998642 4555555544
No 142
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.17 E-value=0.00012 Score=62.88 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=31.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li 128 (277)
.+..|+|+|++|+||||+|..|+++.+ .++..|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~ 68 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVD 68 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhh
Confidence 568899999999999999999999765 888887653
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.17 E-value=0.00014 Score=59.83 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+++.++..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998766
No 144
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.17 E-value=0.00015 Score=58.85 Aligned_cols=26 Identities=23% Similarity=0.124 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|++|+||||+++.+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999877
No 145
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.16 E-value=0.0001 Score=68.04 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=29.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
.+..|+|+|+||+|||++|+.+++.++.+++..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 3567999999999999999999999987776443
No 146
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.14 E-value=0.00015 Score=63.80 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=28.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..++|+|+||+|||++|+.+++.++.+++.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~ 94 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 94 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 45789999999999999999999999877654
No 147
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00019 Score=68.97 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=34.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.++-|+|.||||||||++|+++|..+++.|+ +...++....|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 5678999999999999999999999998875 44455555444
No 148
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.10 E-value=9.5e-05 Score=64.66 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=27.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
+..|+|+|+||+|||++++.++..++.+++..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 45589999999999999999999998776543
No 149
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.10 E-value=0.00014 Score=64.46 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=27.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.+..++|+|+||+|||++++.+++.++..++
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3578999999999999999999999986654
No 150
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.09 E-value=0.00022 Score=59.59 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=23.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
+.++|+|++||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999888744
No 151
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.09 E-value=0.00014 Score=65.84 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|.|+||+|||++|+.+|..++..++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 35679999999999999999999999877654
No 152
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.08 E-value=0.00019 Score=60.65 Aligned_cols=26 Identities=31% Similarity=0.156 Sum_probs=21.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|...+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998754
No 153
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.07 E-value=0.0002 Score=68.20 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=34.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~~~g 133 (277)
.++-|.|.||||||||.+|+++|..+++.|+ +..+++....|
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 4577999999999999999999999998875 44555555554
No 154
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.04 E-value=0.00026 Score=63.87 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=25.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
++..|+|+|++||||||+++.|+..++.
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5689999999999999999999998864
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.02 E-value=0.00027 Score=57.12 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=24.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++|+|++|+|||++++.+++.+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999874
No 156
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.97 E-value=0.00032 Score=59.32 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=25.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
.+..++|+|++|+||||+++.+++.++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999988763
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.94 E-value=0.00022 Score=65.82 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=27.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
+..|+|+|+||||||++|+.+|..++..++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4679999999999999999999999877654
No 158
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.93 E-value=0.00022 Score=57.09 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..|+|+|++|||||++|+.++...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45779999999999999999999865
No 159
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.92 E-value=0.00034 Score=59.17 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++.+++|+|++||||||+.+.|+..+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368899999999999999999998755
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.92 E-value=0.00021 Score=63.66 Aligned_cols=29 Identities=28% Similarity=0.316 Sum_probs=24.7
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.-++|.|+|||||||+++.+|..++..++
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 33999999999999999999998875443
No 161
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.90 E-value=0.00034 Score=60.01 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999998755
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.89 E-value=0.00025 Score=64.59 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=30.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhhh--ccCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYY--FDSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~~--iD~D~li~~ 130 (277)
++..|+|.|+||||||++|+.+|..+ +..+ ++...+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~ 85 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 85 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence 34789999999999999999999988 5544 444444433
No 163
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.86 E-value=0.00028 Score=63.73 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.9
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccC
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDS 124 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~ 124 (277)
...|+|+|++|+|||++++.+++.++..++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 45799999999999999999999998776543
No 164
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.85 E-value=0.00035 Score=63.75 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=24.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
..++|+|+||+||||+++.++..++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 679999999999999999999988654
No 165
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.85 E-value=0.00041 Score=59.88 Aligned_cols=28 Identities=21% Similarity=0.120 Sum_probs=24.3
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.++..++|+||+||||||+.+.|+..+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 5689999999999999999999987553
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.84 E-value=0.00031 Score=61.04 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=24.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
..++|+|++||||||+++.++..++..++
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34999999999999999999987764443
No 167
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.83 E-value=0.00033 Score=65.15 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=30.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc--cCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF--DSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i--D~D~li~~ 130 (277)
.+..|+|.|++|+|||++|+.+|..++..++ ++..+...
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 3578999999999999999999999997765 44444433
No 168
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.83 E-value=0.00032 Score=66.85 Aligned_cols=31 Identities=29% Similarity=0.330 Sum_probs=27.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh--hhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR--YYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~i 122 (277)
++..|+|.|+||+|||++|+.+|..+| +.|+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 457899999999999999999999998 5554
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.82 E-value=0.00037 Score=64.17 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.+..|+|+|++|+|||++|+.++..++..++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 4578999999999999999999999987764
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.75 E-value=0.00026 Score=56.58 Aligned_cols=36 Identities=11% Similarity=0.172 Sum_probs=27.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-~~~iD~D~l 127 (277)
.+..|+|+|++|+|||++|+.++...+ +.++++..+
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~ 62 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEY 62 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTH
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhC
Confidence 356799999999999999999998766 333444443
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.73 E-value=0.00044 Score=66.95 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=27.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
...++|+|++|+||||+++.+++.+|+.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 4689999999999999999999999987654
No 172
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.71 E-value=0.00066 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..|+|+|++|+||||+++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998763
No 173
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.70 E-value=2.5e-05 Score=74.45 Aligned_cols=98 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred cCCCC--cccCCCccccccccccccccceeeeeeecCCceeeeccCCCCCccceeeeeccCCchh----hhhhcccccc-
Q 023776 17 ITPKG--LKFDPPFSLLHSQSYAPIRTSLQYSIISRKPRITTRSIADDTTSNTVTKVAAEDPSFA----VKKKAADIST- 89 (277)
Q Consensus 17 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~----l~~~~~~~~~- 89 (277)
|+..+ ..|.+.+..|++. ++..|-.+.+..+++.+.++. ..+.++|+... ++....++.+
T Consensus 21 ~~e~~~~~~~~e~~~~Ll~a-----------dv~~~~~~~~~~~vk~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ll~~ 87 (432)
T 2v3c_C 21 VDKKLIKEVIKDIQRALIQA-----------DVNVKLVLKMSKEIERRALEE--KTPKGLSKKEHIIKIVYEELVKLLGE 87 (432)
T ss_dssp CCSSTTHHHHHHHHHHHHHT-----------CCCHHHHHHHTHHHHHHHSSS--CSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHc-----------CCCHHHHHHHHHHHHHHhccc--cccccCChHHHHHHHHHHHHHHHhCC
Confidence 44444 3456667777777 888888888877777766542 45677887652 2222212111
Q ss_pred ----c-c---cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcch
Q 023776 90 ----E-L---KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (277)
Q Consensus 90 ----~-~---~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~l 127 (277)
+ + ++..|+|+|++|+||||++..||..+. ..++|+|..
T Consensus 88 ~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 88 EAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp SCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 1 1 236899999999999999999997663 446787743
No 174
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.70 E-value=0.00061 Score=61.45 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
.+..++|.|+||+|||++++.++..++..+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 357899999999999999999999888654
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.00073 Score=56.40 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=24.0
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
..++|+|++|+||||+++.+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 479999999999999999999988653
No 176
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.66 E-value=0.00057 Score=61.55 Aligned_cols=35 Identities=26% Similarity=0.361 Sum_probs=27.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh---hhh--hccCcch
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDSL 127 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L---g~~--~iD~D~l 127 (277)
+..++|+|++|+||||+++.++..+ +.. +++++.+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 4689999999999999999999877 443 3454444
No 177
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.65 E-value=0.00074 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.068 Sum_probs=23.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++..+.|+|++||||||+++.|+-
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999986
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.65 E-value=0.00068 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++..++|+|++||||||+++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999973
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.64 E-value=0.00047 Score=60.86 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=24.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.|+|+|++||||||+++.++..++..++
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i 102 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFI 102 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEE
Confidence 4999999999999999999987764443
No 180
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.64 E-value=0.00083 Score=55.10 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++|+|+.||||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999998765
No 181
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.001 Score=60.87 Aligned_cols=27 Identities=15% Similarity=0.237 Sum_probs=25.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++.+++|.|+||+|||++++.+++.+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999884
No 182
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.60 E-value=0.0008 Score=61.27 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=25.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
.+..++|+|+||+|||++++.+++.++.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999998874
No 183
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.00088 Score=55.37 Aligned_cols=25 Identities=24% Similarity=0.146 Sum_probs=22.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..++|+|++|+|||++++.+++.+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4599999999999999999998764
No 184
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.0011 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..|+|+|++||||||+.+.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999987654
No 185
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.58 E-value=0.00074 Score=63.21 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=27.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
++..|+|+|++||||||+++.|+..++..++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 57899999999999999999999877765544
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.57 E-value=0.00061 Score=64.79 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh-hhhh--ccCcchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL-RYYY--FDSDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L-g~~~--iD~D~li~~ 130 (277)
.+..|+|.|+||+|||++|+.+|..+ +..+ ++...+...
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 35789999999999999999999988 6555 455455433
No 187
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.57 E-value=0.00075 Score=65.07 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=27.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
+..|+|+|+||+||||+++.++..++.+|+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3569999999999999999999999887753
No 188
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.57 E-value=0.00087 Score=59.48 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..++|+|++||||||+|+.+++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4799999999999999999999873
No 189
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.56 E-value=0.00056 Score=69.93 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=32.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC--cchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~--D~li~~~~g 133 (277)
.+.-|+|.||||||||++|+.+|..+|..++.. .+++....|
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 457799999999999999999999999887543 344444333
No 190
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.55 E-value=0.0011 Score=57.22 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=25.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
...|+|.||||+||||+|..|++.++...+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 457999999999999999999998865444
No 191
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.54 E-value=0.00059 Score=60.93 Aligned_cols=30 Identities=23% Similarity=0.165 Sum_probs=26.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
+..++|+|++|+|||++++.+++.++..++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 467999999999999999999999886653
No 192
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.00061 Score=61.84 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|++|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999887
No 193
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.50 E-value=0.0008 Score=58.59 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999999974
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.48 E-value=0.00084 Score=65.55 Aligned_cols=32 Identities=34% Similarity=0.397 Sum_probs=28.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++..++|+|+|||||||+++.++..++..++
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 46789999999999999999999998876553
No 195
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.46 E-value=0.0009 Score=57.81 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=22.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999974
No 196
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.45 E-value=0.0011 Score=63.52 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
....++|+|+||+|||++++.|+..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999987
No 197
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.44 E-value=0.00091 Score=60.97 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=23.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+..++|+|++|+||||+++.+++.+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999877
No 198
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.44 E-value=0.0011 Score=55.83 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+..|+|+|++||||||+.+.|+..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 3579999999999999999999766
No 199
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.43 E-value=0.0012 Score=60.03 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=23.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++|+|++||||||+.+.|+.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 68999999999999999999998654
No 200
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.42 E-value=0.001 Score=55.94 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=32.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVFE 130 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~~ 130 (277)
..+.-|+|+|++|+||||+|..|.+ -|+.++.-|...-.
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i~ 52 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDLK 52 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEEE
Confidence 3578899999999999999999988 48988887766543
No 201
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.42 E-value=0.0013 Score=55.23 Aligned_cols=27 Identities=19% Similarity=0.071 Sum_probs=23.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++..++|+|++||||||+++.++..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998543
No 202
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=96.40 E-value=0.0011 Score=61.06 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=25.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
++..|+|.|+.||||||+++.|++.|+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5689999999999999999999998875
No 203
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.38 E-value=0.0011 Score=59.93 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|++|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999877
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.37 E-value=0.0011 Score=63.31 Aligned_cols=30 Identities=23% Similarity=0.095 Sum_probs=26.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
..++|+|+||+||||+++.+++.++..++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~ 80 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVER 80 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence 579999999999999999999998877654
No 205
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.36 E-value=0.0016 Score=57.72 Aligned_cols=28 Identities=14% Similarity=0.072 Sum_probs=24.5
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.++..++|+|++||||||+.+.|+..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3678999999999999999999987553
No 206
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.35 E-value=0.0011 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.226 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 207
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.32 E-value=0.00099 Score=64.35 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=31.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc--Ccchhhhhc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFEAA 132 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~~~ 132 (277)
.+..|+|.|+||+|||++|+.++..++.+|+. +..+.....
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 45679999999999999999999998877653 334443333
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.31 E-value=0.0011 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.103 Sum_probs=22.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++..++|+|++||||||+.+.|+-
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999999999975
No 209
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.30 E-value=0.0012 Score=58.65 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999999974
No 210
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.28 E-value=0.0017 Score=54.40 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=28.4
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhhhh--hhhccCcc
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADALR--YYYFDSDS 126 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~Lg--~~~iD~D~ 126 (277)
..++..+.|+|++||||||+++.++..-+ ..|++.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34689999999999999999999986222 34566554
No 211
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.28 E-value=0.0015 Score=57.29 Aligned_cols=25 Identities=48% Similarity=0.557 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999763
No 212
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.28 E-value=0.0012 Score=58.96 Aligned_cols=24 Identities=21% Similarity=0.235 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999999974
No 213
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.28 E-value=0.0013 Score=57.37 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999999753
No 214
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.28 E-value=0.0019 Score=53.82 Aligned_cols=26 Identities=23% Similarity=0.042 Sum_probs=23.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+.|+|+|++||||||+...|+..|.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 36799999999999999999998764
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.27 E-value=0.0013 Score=58.27 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+--
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 216
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.27 E-value=0.0013 Score=57.72 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+--
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 217
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.25 E-value=0.0013 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999974
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.25 E-value=0.0018 Score=58.72 Aligned_cols=26 Identities=35% Similarity=0.323 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||+.+.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999655
No 219
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.24 E-value=0.0014 Score=57.84 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999999974
No 220
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.22 E-value=0.0011 Score=59.44 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=25.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
..+++.|+||+|||++++.+++.++..++.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 567778889999999999999999877654
No 221
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.22 E-value=0.0015 Score=56.67 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.21 E-value=0.0014 Score=56.50 Aligned_cols=24 Identities=38% Similarity=0.315 Sum_probs=22.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999999999974
No 223
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.21 E-value=0.0011 Score=67.70 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=28.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD 123 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD 123 (277)
.+..|+|+|+|||||||+++.++..++..++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 46789999999999999999999988876643
No 224
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.19 E-value=0.0021 Score=58.19 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||+.+.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999755
No 225
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.19 E-value=0.0018 Score=57.46 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999863
No 226
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.19 E-value=0.0016 Score=58.65 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=23.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
...|+|+|+||+|||++|+.+++.++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999876
No 227
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.18 E-value=0.0015 Score=58.11 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999753
No 228
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.18 E-value=0.0015 Score=57.95 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++.+++|+|++||||||+.+.|+--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999999999753
No 229
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.17 E-value=0.0016 Score=57.64 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+--
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999999753
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.002 Score=57.92 Aligned_cols=26 Identities=19% Similarity=0.038 Sum_probs=23.2
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
..++|+|++|+||||+++.+++.++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34999999999999999999998763
No 231
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.16 E-value=0.0023 Score=58.91 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=23.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+..++|+|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999987553
No 232
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.13 E-value=0.0019 Score=65.15 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=24.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.+++|+|+||+|||++++.||+.+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999987
No 233
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.13 E-value=0.0017 Score=57.40 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|.+++|+|++||||||+.+.|+-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999999743
No 234
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.13 E-value=0.0015 Score=59.40 Aligned_cols=23 Identities=22% Similarity=0.050 Sum_probs=22.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++|+|++|+||||+++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999877
No 235
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.13 E-value=0.002 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+.-
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999999999753
No 236
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.11 E-value=0.0026 Score=53.18 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=21.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..++++|+|||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999996666544
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.11 E-value=0.0024 Score=57.93 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 46789999999999999999999765
No 238
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.11 E-value=0.0018 Score=57.06 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999999753
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.10 E-value=0.0025 Score=58.46 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++||||||+.+.|+..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999755
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.10 E-value=0.0021 Score=54.61 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=23.2
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++..+.|+|++||||||+++.++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999999987
No 241
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.09 E-value=0.0018 Score=57.37 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999999974
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.08 E-value=0.0016 Score=63.03 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=25.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.-|+|+|+|||||||+++.++..++..++
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i 93 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFI 93 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 44999999999999999999998876554
No 243
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.07 E-value=0.0019 Score=57.85 Aligned_cols=25 Identities=40% Similarity=0.410 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999999753
No 244
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.02 E-value=0.002 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
++..++|+|++||||||+.+.|+-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999999753
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.00 E-value=0.003 Score=52.57 Aligned_cols=26 Identities=27% Similarity=0.048 Sum_probs=22.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
...|+|+|++||||||+.+.|...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46799999999999999999987654
No 246
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.00 E-value=0.0016 Score=59.89 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=22.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+|.|+.||||||+++.|++.|+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999875
No 247
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.99 E-value=0.003 Score=56.09 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=27.8
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|+.....+. ++..++|+|++|+||||+++.++-.+
T Consensus 24 ~Ld~i~~~l~---~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 24 GINDKTLGAR---GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp THHHHHCSBC---TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCC---CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4444444433 68999999999999999999998644
No 248
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.99 E-value=0.0024 Score=55.69 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..|+|+|++|+|||++|+.+++.++
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 249
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.98 E-value=0.0031 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCccHHHHHHHHHc
Confidence 578999999999999999999984
No 250
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.97 E-value=0.0026 Score=55.64 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..++|+|++||||||+.+.|+--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999853
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0032 Score=56.75 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=28.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh------hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR------YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg------~~~iD~D~l 127 (277)
++.+|+|+|++|+||||++..||..+. ..+++.|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 477999999999999999999996553 235677653
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.94 E-value=0.0035 Score=56.63 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=21.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++|+|++|+||||+++.++..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 39999999999999999999854
No 253
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.94 E-value=0.0032 Score=58.25 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999999984
No 254
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.0028 Score=58.88 Aligned_cols=24 Identities=33% Similarity=0.492 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 578999999999999999999985
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.92 E-value=0.0016 Score=66.52 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=31.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhcc--Ccchhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFD--SDSLVFE 130 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD--~D~li~~ 130 (277)
.+..++|.|+|||||||+++.+|..++..++. ...+...
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~ 550 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 550 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh
Confidence 46779999999999999999999999877654 3344433
No 256
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.91 E-value=0.0036 Score=56.88 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=26.2
Q ss_pred ccccccccceeEEEeeccchHHhhhhHHHHh
Q 023776 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+|.+..++..++|+|++|+||||+.+.|+-
T Consensus 165 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g 195 (307)
T 1t9h_A 165 ADIIPHFQDKTTVFAGQSGVGKSSLLNAISP 195 (307)
T ss_dssp TTTGGGGTTSEEEEEESHHHHHHHHHHHHCC
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHhcc
Confidence 4455567889999999999999999999853
No 257
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0034 Score=55.63 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=22.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..++|+|++|+||||+++.+++.++
T Consensus 47 ~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3599999999999999999999864
No 258
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.90 E-value=0.002 Score=54.18 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=24.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhh--hhccCcc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRY--YYFDSDS 126 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~--~~iD~D~ 126 (277)
.|+|+|++||||||+|..|+.. |. .|+++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 3789999999999999999976 63 3555533
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.003 Score=57.24 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=21.4
Q ss_pred EEEeeccchHHhhhhHHHHhhhh
Q 023776 96 VFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 96 I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++|.|++|+||||+++.++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998763
No 260
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.89 E-value=0.0021 Score=65.75 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=33.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccC--cchhhhhcC
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDS--DSLVFEAAG 133 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~--D~li~~~~g 133 (277)
.+.-|+|.||||||||.+|+.+|..++..|+.. .+++....|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence 356699999999999999999999999988754 355555555
No 261
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.89 E-value=0.0034 Score=58.28 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+|+|+|++||||||+.+.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 57899999999999999999999755
No 262
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=95.89 E-value=0.0023 Score=59.87 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+|.|+.||||||+++.|++.|+
T Consensus 48 ~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 48 TLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 568899999999999999999999875
No 263
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.86 E-value=0.003 Score=55.81 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=21.6
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++|+|++|+|||++++.+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 49999999999999999999986
No 264
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.83 E-value=0.0028 Score=60.10 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=23.2
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+..++|.|++|+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999877
No 265
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.82 E-value=0.0041 Score=52.87 Aligned_cols=26 Identities=19% Similarity=0.061 Sum_probs=22.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
.++..+.|+|+|||||||++..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999888653
No 266
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.81 E-value=0.0033 Score=58.89 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHc
Confidence 578999999999999999999984
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.80 E-value=0.0029 Score=58.56 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+|+|+|++||||||+.+.|+..+
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 268
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.79 E-value=0.0036 Score=55.23 Aligned_cols=27 Identities=33% Similarity=0.188 Sum_probs=23.8
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..++..+.|+|++||||||+++.++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 347899999999999999999999853
No 269
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.77 E-value=0.0031 Score=56.76 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6789999999999999999999753
No 270
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.77 E-value=0.0035 Score=58.11 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999999984
No 271
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.77 E-value=0.0036 Score=58.18 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHHC
Confidence 578999999999999999999984
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.75 E-value=0.0044 Score=57.60 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=24.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+|+|++||||||+.+.|+..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 578999999999999999999987654
No 273
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0037 Score=58.08 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCchHHHHHHHHhc
Confidence 578999999999999999999985
No 274
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.73 E-value=0.0039 Score=56.47 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
..++|+|++|+||||+++.+++.++.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998864
No 275
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.72 E-value=0.0031 Score=55.91 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+..++|+|++||||||+.+.|+-.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999999753
No 276
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.71 E-value=0.0038 Score=58.14 Aligned_cols=24 Identities=21% Similarity=0.160 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEEcCCCchHHHHHHHHhc
Confidence 589999999999999999999974
No 277
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.68 E-value=0.004 Score=58.09 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 578999999999999999999984
No 278
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.67 E-value=0.0046 Score=59.86 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+|+|+|++||||||+.+.|+..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 57899999999999999999998755
No 279
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.65 E-value=0.0042 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=22.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.++-
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHc
Confidence 578999999999999999999984
No 280
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.0042 Score=59.49 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|..++|+|++||||||+.|.|+..+
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999999998643
No 281
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.61 E-value=0.0051 Score=56.49 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=29.1
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhhhhh--hccC
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADALRYY--YFDS 124 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~--~iD~ 124 (277)
...++..+.|.|+||+||||+|..++...|.+ |++.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 34567888999999999999999999765543 6666
No 282
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.60 E-value=0.0058 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.6
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
...+|+|+.||||||+.++|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4889999999999999999876554
No 283
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.59 E-value=0.0036 Score=57.83 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=26.0
Q ss_pred ccceeEEEeeccchHHhhhh-HHHHhhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLG-KFLADALRY 119 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTva-k~LA~~Lg~ 119 (277)
.++..|+|.|+.||||||++ +.|++.|+.
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 45789999999999999999 999998764
No 284
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.59 E-value=0.0036 Score=55.81 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=28.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhhhhccCc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRYYYFDSD 125 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D 125 (277)
+..++|+|++|+||||+++.+++.+++.+++..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~ 63 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence 478999999999999999999988776666653
No 285
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.58 E-value=0.0047 Score=57.95 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..++|+|++||||||+.+.|+-
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 579999999999999999999985
No 286
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.55 E-value=0.0057 Score=56.61 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=23.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+|+|++||||||+.+.++..+.
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 456999999999999999999987554
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.53 E-value=0.0035 Score=60.73 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..|+|.|+||+|||++|+.++..++
T Consensus 40 ~~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred cCCeeEeecCchHHHHHHHHHHHHHHh
Confidence 467899999999999999999998774
No 288
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.51 E-value=0.0062 Score=52.79 Aligned_cols=27 Identities=26% Similarity=-0.033 Sum_probs=23.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..++++|+||+||||.+-.++.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~ 37 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE 37 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 578999999999999999988887663
No 289
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.46 E-value=0.0044 Score=62.40 Aligned_cols=28 Identities=25% Similarity=0.230 Sum_probs=25.3
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhhc
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYYF 122 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~i 122 (277)
.++|+|++|+|||++|+.+++.++..++
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 6999999999999999999999986654
No 290
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.46 E-value=0.0058 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=21.5
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++|+|++|+||||+++.+++.+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 49999999999999999999886
No 291
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.42 E-value=0.0037 Score=56.34 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=25.4
Q ss_pred ccccccccceeEEEeeccchHHhhhhHHHH
Q 023776 85 ADISTELKGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 85 ~~~~~~~~~~~I~L~G~~GSGKSTvak~LA 114 (277)
.+|...+.+..++|+|++|+||||+.+.|+
T Consensus 157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 157 DELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 444444678999999999999999999997
No 292
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.39 E-value=0.006 Score=54.16 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+++|+|++||||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998543
No 293
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.39 E-value=0.0069 Score=55.20 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~ 126 (277)
++..|.|+|++|+||||++..||..+. ..++|.|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467899999999999999999997653 23467665
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.38 E-value=0.007 Score=55.42 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..+.|+|++||||||+.+.|+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999998644
No 295
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.37 E-value=0.004 Score=56.93 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.+++|+|++||||||+.+.|+..+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999997643
No 296
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.37 E-value=0.0063 Score=57.93 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=28.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---h--hhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~--~~iD~D~l 127 (277)
++..|+++|++||||||++..||..+. . .++++|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 468999999999999999999997663 2 24677754
No 297
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.36 E-value=0.0044 Score=63.55 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..++|+|+||+||||+++.|+..+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999987
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.30 E-value=0.007 Score=55.67 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=24.3
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++..+.|+|++||||||+++.++-..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999998754
No 299
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.29 E-value=0.0086 Score=50.18 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+...|+|+|.+|+||||+...|+..+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998765
No 300
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.28 E-value=0.0048 Score=51.19 Aligned_cols=25 Identities=28% Similarity=0.232 Sum_probs=22.1
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.++..|+|+|++||||||+.+.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3578899999999999999998864
No 301
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.25 E-value=0.0074 Score=51.29 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=20.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+++++++|+||||||++|..+..
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHH
Confidence 357889999999999999987643
No 302
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.23 E-value=0.0065 Score=55.45 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=31.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLVF 129 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li~ 129 (277)
.+.-|+|+|.+|+||||++..|.++ |+.++.-|...-
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i 179 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEI 179 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEE
Confidence 4788999999999999999999875 888887666543
No 303
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.14 E-value=0.009 Score=48.42 Aligned_cols=24 Identities=38% Similarity=0.389 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999975
No 304
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.13 E-value=0.0067 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=24.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++|+|++||||||+++.++..++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999998764
No 305
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.01 Score=53.22 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=23.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++..|+++|++|+||||++..||..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
No 306
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.13 E-value=0.0091 Score=56.97 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=29.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---h--hhccCcchh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDSLV 128 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~--~~iD~D~li 128 (277)
++..|+++|++|+||||++..||..|. . .++++|...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 368999999999999999999997553 2 357777653
No 307
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.12 E-value=0.0079 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
..|+|.||||+|||++++.||..+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhh
Confidence 469999999999999999999864
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.11 E-value=0.0088 Score=47.89 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999975
No 309
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.08 E-value=0.01 Score=46.38 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+++|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHh
Confidence 35799999999999999999875
No 310
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.06 E-value=0.0073 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=28.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~ 126 (277)
++..|+++|++|+||||++..||..+. ..++|.|.
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 367899999999999999999997663 33567764
No 311
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.05 E-value=0.0083 Score=60.39 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=24.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++|+|+||+|||++++.|+..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998773
No 312
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.05 E-value=0.01 Score=54.52 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+...|+|+|.+|+||||+...|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 313
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.05 E-value=0.0094 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|++||||||+.+.|+.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 36799999999999999999975
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.011 Score=47.97 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999975
No 315
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.02 E-value=0.0098 Score=56.27 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=23.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++.+|+|+|++||||||+.+.+...+.
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 567899999999999999999987553
No 316
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.00 E-value=0.011 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..|+|+|+|||||||+-+.|...+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 36889999999999999999998654
No 317
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.98 E-value=0.0055 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=22.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+.+..++|+|++|+||||+.+.|+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHC
T ss_pred cCCCEEEEECCCCccHHHHHHHHhc
Confidence 5678999999999999999999974
No 318
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.97 E-value=0.008 Score=58.66 Aligned_cols=25 Identities=32% Similarity=0.248 Sum_probs=22.8
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-+|.+++|+|++||||||+.+.|+-
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3678999999999999999999975
No 319
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.96 E-value=0.011 Score=46.33 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988864
No 320
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.95 E-value=0.009 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+.-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999754
No 321
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.94 E-value=0.013 Score=50.40 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh--h--hhhccCcc
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL--R--YYYFDSDS 126 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L--g--~~~iD~D~ 126 (277)
.+...++++|.+|+||||++..|+..+ | ...+|.|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 456788999999999999999999765 3 23467663
No 322
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.94 E-value=0.011 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.+..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999875
No 323
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.94 E-value=0.0092 Score=58.17 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=22.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-+|..++|+|++||||||+.+.|+-
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999999985
No 324
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.93 E-value=0.011 Score=46.30 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=20.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+.|+++|.+|+||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999998753
No 325
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.92 E-value=0.012 Score=54.58 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=29.4
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcc
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDS 126 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~ 126 (277)
...++.++.|.|+|||||||++..++..+. ..|+|...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 445789999999999999999999987542 23566543
No 326
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.88 E-value=0.013 Score=49.46 Aligned_cols=26 Identities=15% Similarity=-0.102 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+++++|++||||||.+-.++.++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999888766
No 327
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.88 E-value=0.0047 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.9
Q ss_pred cccceeEEEeeccchHHhhhhHHHHh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+.+..++|+|++||||||+.+.|+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHST
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcc
Confidence 35778999999999999999999963
No 328
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.88 E-value=0.0086 Score=58.72 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|+.-+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 68999999999999999999997543
No 329
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.87 E-value=0.013 Score=49.15 Aligned_cols=26 Identities=27% Similarity=0.115 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+...|+|+|.+|+||||+...|+..+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998754
No 330
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.87 E-value=0.012 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+++|.+|+||||+.+.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998874
No 331
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.87 E-value=0.013 Score=55.68 Aligned_cols=36 Identities=25% Similarity=0.212 Sum_probs=28.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhhh------hhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALRY------YYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg~------~~iD~D~l 127 (277)
++..|.++|++|+||||++..||..|.. .++|+|..
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 3578999999999999999999976643 25788753
No 332
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.84 E-value=0.011 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=20.2
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|++|+||||+.+.|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 333
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.79 E-value=0.01 Score=53.38 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+..|+|+|++|+|||++|+.++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 35789999999999999999999854
No 334
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.77 E-value=0.011 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.3
Q ss_pred cceeEEE--eeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFL--VGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L--~G~~GSGKSTvak~LA~~Lg 118 (277)
.+..++| +|++|+||||+++.+++.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3567888 99999999999999998763
No 335
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.74 E-value=0.013 Score=53.22 Aligned_cols=27 Identities=11% Similarity=0.009 Sum_probs=23.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRYY 120 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~~ 120 (277)
..++|+|++|+|||++++.+|+.+...
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 568999999999999999999988643
No 336
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=94.73 E-value=0.0079 Score=54.84 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=30.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhhhhhccCcchh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALRYYYFDSDSLV 128 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg~~~iD~D~li 128 (277)
..+.-|+|+|++|+||||+|-.|.+ .|+.++.-|...
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~ 181 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIE 181 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEE
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEE
Confidence 4577899999999999999999976 588888766654
No 337
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.69 E-value=0.01 Score=57.55 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.+|+|+|++||||||+.+.|+..+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999997644
No 338
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.68 E-value=0.012 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.8
Q ss_pred ccceeEEEeeccchHHhhhhHHHH
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA 114 (277)
.++.++.|+|++||||||++..|+
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 468899999999999999999776
No 339
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.68 E-value=0.015 Score=53.12 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=23.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++..|+|+|++|+||||+.+.|+..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.68 E-value=0.013 Score=46.09 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999999875
No 341
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.65 E-value=0.013 Score=49.72 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=23.0
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHh
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+..++..+.|.|.||+|||++|-.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999999988763
No 342
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.62 E-value=0.01 Score=59.86 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.9
Q ss_pred eEEEeeccchHHhhhhHHHHhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++|+|+||+|||++|+.+++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.61 E-value=0.014 Score=45.90 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=20.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998864
No 344
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.60 E-value=0.015 Score=45.79 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 345
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.60 E-value=0.013 Score=59.95 Aligned_cols=34 Identities=29% Similarity=0.294 Sum_probs=27.1
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh---hhhh--ccCcch
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL---RYYY--FDSDSL 127 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L---g~~~--iD~D~l 127 (277)
..++|+|++|+|||++|+.|++.+ +.++ +|+..+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence 479999999999999999999987 4444 455444
No 346
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.59 E-value=0.0091 Score=58.70 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+.-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999999753
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.015 Score=47.25 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+...|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998865
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.56 E-value=0.016 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999864
No 349
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=94.55 E-value=0.015 Score=51.71 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=25.5
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhhh--hhccC
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALRY--YYFDS 124 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg~--~~iD~ 124 (277)
..++|+|++|+||||+++.+++.++. .+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEc
Confidence 68999999999999999999987653 34444
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.55 E-value=0.011 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|.+|+||||+.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.54 E-value=0.012 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-+.++|+|+.||||||+.+.|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHh
Confidence 36789999999999999999985
No 352
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.53 E-value=0.016 Score=55.16 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=26.7
Q ss_pred cccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+-+.-+|..+.|+|++||||||+.+.|+..+
T Consensus 150 ~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 150 ALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34444589999999999999999999998654
No 353
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.50 E-value=0.015 Score=45.79 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999864
No 354
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.49 E-value=0.01 Score=58.37 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+.-
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999999753
No 355
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.48 E-value=0.013 Score=52.68 Aligned_cols=27 Identities=11% Similarity=-0.075 Sum_probs=23.7
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..++..+.|.|+|||||||++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999999853
No 356
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.48 E-value=0.012 Score=57.42 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
++.+++|+|++||||||+.+.|+-
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999974
No 357
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.47 E-value=0.017 Score=53.19 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=28.7
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhh-----hhhhccCcc
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~L-----g~~~iD~D~ 126 (277)
...++..+.|.|+|||||||++..++... ...|+|.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 44578999999999999999999998543 134565543
No 358
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.46 E-value=0.014 Score=56.79 Aligned_cols=25 Identities=40% Similarity=0.420 Sum_probs=22.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|+.||||||+.+.|+-.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999999753
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.42 E-value=0.016 Score=47.01 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+++|.+|+||||+...|..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999975
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.40 E-value=0.015 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=21.0
Q ss_pred ccceeEEEeeccchHHhhhhHHH
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFL 113 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~L 113 (277)
.++..++|+|++||||||+++.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 36899999999999999999994
No 361
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.39 E-value=0.016 Score=53.32 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred cccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 86 DISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 86 ~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+-+.-+|..+.|+|++||||||+.+.++..+
T Consensus 64 ~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 64 GLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eeeeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33444579999999999999999999998654
No 362
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=94.39 E-value=0.037 Score=49.81 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=19.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..+.|+|+|| ||+|+.+.|.+.+.
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p 122 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYP 122 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhCh
Confidence 4577999988 59999999987654
No 363
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.38 E-value=0.014 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred ccee--EEEeeccchHHhhhhHHHHh
Q 023776 92 KGTS--VFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~--I~L~G~~GSGKSTvak~LA~ 115 (277)
+|.. ++|+|++||||||+.+.|+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence 4667 99999999999999999975
No 364
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.37 E-value=0.017 Score=45.45 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=19.2
Q ss_pred eeEEEeeccchHHhhhhHHHH
Q 023776 94 TSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA 114 (277)
..|+|+|.+|+||||+.+.|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 579999999999999999885
No 365
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.37 E-value=0.018 Score=47.96 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
....|+|+|++|+||||+...|...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999999763
No 366
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.35 E-value=0.0091 Score=58.53 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..++|+|++||||||+.+.|+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999999998653
No 367
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.35 E-value=0.019 Score=50.39 Aligned_cols=23 Identities=35% Similarity=0.216 Sum_probs=20.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+||||||+.+.|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999964
No 368
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.33 E-value=0.018 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 36799999999999999999864
No 369
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.016 Score=57.38 Aligned_cols=25 Identities=36% Similarity=0.284 Sum_probs=23.0
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+|..++|+|++||||||+.+.|+-
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhc
Confidence 3689999999999999999999985
No 370
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.28 E-value=0.02 Score=45.64 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=21.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+...|+|+|.+|+||||+.+.|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4478999999999999999998753
No 371
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.25 E-value=0.021 Score=45.07 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999998854
No 372
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.25 E-value=0.02 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998864
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.24 E-value=0.02 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+.+.|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999999865
No 374
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.23 E-value=0.019 Score=56.33 Aligned_cols=28 Identities=25% Similarity=0.121 Sum_probs=23.7
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
+....++|+|+|||||||+.+.+...+.
T Consensus 202 ~~~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 202 AGHRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp TTCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999987553
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.21 E-value=0.02 Score=55.48 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=26.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhh---h--hhccCcc
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDS 126 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg---~--~~iD~D~ 126 (277)
+..|+|+|.+||||||++..|+..+. . .++|.|.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 56899999999999999999997653 2 3467665
No 376
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.0084 Score=59.15 Aligned_cols=27 Identities=11% Similarity=0.285 Sum_probs=24.0
Q ss_pred eEEEeeccchHHhhhhHHHHhhhhhhh
Q 023776 95 SVFLVGMNNAIKTHLGKFLADALRYYY 121 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~~Lg~~~ 121 (277)
.|+|+|+||+|||++|+.+++.++...
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEE
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCce
Confidence 799999999999999999998876443
No 377
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.19 E-value=0.022 Score=52.08 Aligned_cols=27 Identities=19% Similarity=-0.063 Sum_probs=23.9
Q ss_pred cccceeEEEeeccchHHhhhhHHHHhh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..++.++.|.|+|||||||++..++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999999864
No 378
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.18 E-value=0.02 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=20.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999998863
No 379
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.14 E-value=0.02 Score=45.12 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHc
Confidence 346899999999999999999864
No 380
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.14 E-value=0.018 Score=56.95 Aligned_cols=24 Identities=42% Similarity=0.436 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|+.||||||+.+.|+-
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~G 404 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAG 404 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999999975
No 381
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.13 E-value=0.022 Score=44.82 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=19.9
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5799999999999999998864
No 382
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.12 E-value=0.016 Score=57.45 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=22.8
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-+|..++|+|++||||||+.+.|+-
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhC
Confidence 3689999999999999999999974
No 383
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.10 E-value=0.021 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.7
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999999863
No 384
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.10 E-value=0.025 Score=51.08 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=28.1
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|.+.. .++.++..++|.|.||+||||++..++...
T Consensus 57 ~LD~~l---gGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMT---YGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHH---SSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhc---CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455443 244578999999999999999999998643
No 385
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.09 E-value=0.012 Score=57.80 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|+..+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 68999999999999999999997533
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.09 E-value=0.021 Score=45.54 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 387
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.06 E-value=0.023 Score=53.82 Aligned_cols=36 Identities=25% Similarity=0.215 Sum_probs=28.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh-----hhhccCcch
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR-----YYYFDSDSL 127 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg-----~~~iD~D~l 127 (277)
++..|+++|++||||||++..||..+. ..++|.|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 568899999999999999999997663 234676643
No 388
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=94.05 E-value=0.24 Score=44.45 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=20.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
.++.|+|+|| ||+||.+.|.+.+.
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~ 127 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFP 127 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCT
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCc
Confidence 4678999998 79999999987653
No 389
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.05 E-value=0.023 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHh
Confidence 346799999999999999999874
No 390
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.01 E-value=0.021 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.040 Sum_probs=23.4
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
.++..+.|.|+|||||||++..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 46789999999999999999999864
No 391
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.01 E-value=0.022 Score=44.99 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999998874
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.00 E-value=0.021 Score=48.77 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+.+.|..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHcC
Confidence 347899999999999999999864
No 393
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.00 E-value=0.022 Score=53.74 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=20.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+..++|+|++||||||+.+.|+-
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999975
No 394
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.00 E-value=0.022 Score=45.81 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999864
No 395
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.99 E-value=0.023 Score=45.93 Aligned_cols=25 Identities=28% Similarity=0.182 Sum_probs=21.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
....|+|+|.+|+||||+.+.|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988653
No 396
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.98 E-value=0.023 Score=45.53 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 347899999999999999998874
No 397
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.97 E-value=0.023 Score=44.69 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 398
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.96 E-value=0.019 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
+...|+|+|.+|+||||+.+.|.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 45789999999999999998875
No 399
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.95 E-value=0.026 Score=45.57 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999875
No 400
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.90 E-value=0.022 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998853
No 401
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.90 E-value=0.023 Score=45.68 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999874
No 402
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.88 E-value=0.023 Score=53.80 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=22.3
Q ss_pred eeEEEeeccchHHhhhhHHHHhhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
..++|.|++||||||++..++..|.
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999988763
No 403
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.88 E-value=0.025 Score=52.27 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=28.4
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhh-----hhhhccC
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDS 124 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~L-----g~~~iD~ 124 (277)
...++.++.|.|+||+||||+|..++... ...|+|+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34578999999999999999999988643 2346666
No 404
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.88 E-value=0.023 Score=54.86 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.++..+.|+|++||||||+++.++-.+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998643
No 405
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.82 E-value=0.023 Score=56.33 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.5
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+.+++|+|++||||||+.+.|+-
T Consensus 377 ~GEiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 377 DSEILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp TTCEEEEESCTTSSHHHHHHHHHT
T ss_pred cceEEEEECCCCCcHHHHHHHHhc
Confidence 357899999999999999999974
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.81 E-value=0.032 Score=44.63 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 346799999999999999999875
No 407
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.76 E-value=0.027 Score=45.26 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999874
No 408
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.75 E-value=0.027 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=19.7
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|.+|+||||+.+.|..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999875
No 409
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.75 E-value=0.026 Score=44.83 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=20.8
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999875
No 410
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.74 E-value=0.03 Score=53.08 Aligned_cols=36 Identities=8% Similarity=0.094 Sum_probs=27.9
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|.+... +..++..++|.|.||+||||++..++..+
T Consensus 192 ~LD~~~g---Gl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTS---GFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHS---SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcC---CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4554442 34478999999999999999999998643
No 411
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.69 E-value=0.041 Score=50.54 Aligned_cols=42 Identities=17% Similarity=0.051 Sum_probs=31.3
Q ss_pred ccCCch-hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 73 AEDPSF-AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 73 ~~d~~~-~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+...+ .|.+... ++.++..++|.|.||+||||++..+|...
T Consensus 28 gi~TG~~~LD~~~g---Gl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 28 GIPTGFVQLDNYTS---GFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp SBCCSCHHHHHHHC---SBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cccCCChHHHHHhc---CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344445 5665543 34478999999999999999999998653
No 412
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.69 E-value=0.03 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999875
No 413
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.68 E-value=0.028 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999998864
No 414
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.67 E-value=0.03 Score=43.97 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.1
Q ss_pred eEEEeeccchHHhhhhHHHHh
Q 023776 95 SVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 95 ~I~L~G~~GSGKSTvak~LA~ 115 (277)
.|+|+|.+|+||||+.+.|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999864
No 415
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.67 E-value=0.029 Score=45.53 Aligned_cols=24 Identities=42% Similarity=0.517 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999998864
No 416
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.66 E-value=0.028 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998864
No 417
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=93.65 E-value=0.033 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
++ .++|+|+.||||||+.+.|.--++
T Consensus 60 ~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 60 GG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp SS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 45 999999999999999999965554
No 418
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.64 E-value=0.025 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.034 Sum_probs=20.8
Q ss_pred eeEEEeeccchHHhhhhHHHHhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
..++|+|++||||||+.+.|+-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 68899999999999999999753
No 419
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.63 E-value=0.026 Score=52.35 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.9
Q ss_pred ccccceeEEEeeccchHHhhhhHHHHhhh-----hhhhccCcc
Q 023776 89 TELKGTSVFLVGMNNAIKTHLGKFLADAL-----RYYYFDSDS 126 (277)
Q Consensus 89 ~~~~~~~I~L~G~~GSGKSTvak~LA~~L-----g~~~iD~D~ 126 (277)
...++..+.|.|+||+||||+|..++... ...|+|++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 44578899999999999999999888643 234566543
No 420
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.62 E-value=0.028 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.239 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999998863
No 421
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.61 E-value=0.028 Score=44.83 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999998864
No 422
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.61 E-value=0.035 Score=46.28 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=21.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
....|+|+|.+|+||||+.+.|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3578999999999999999988653
No 423
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.59 E-value=0.03 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.384 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998864
No 424
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.58 E-value=0.03 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=20.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998864
No 425
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.57 E-value=0.028 Score=45.42 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
...|+|+|.+|+||||+.+.|...+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4679999999999999998776543
No 426
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.56 E-value=0.031 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+...|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999864
No 427
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.56 E-value=0.032 Score=45.96 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 457899999999999999999874
No 428
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.035 Score=45.12 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 46899999999999999999865
No 429
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.51 E-value=0.031 Score=45.71 Aligned_cols=24 Identities=21% Similarity=0.111 Sum_probs=21.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998864
No 430
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.50 E-value=0.029 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46899999999999999998865
No 431
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.035 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357899999999999999999874
No 432
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.45 E-value=0.037 Score=52.21 Aligned_cols=33 Identities=27% Similarity=0.243 Sum_probs=27.4
Q ss_pred ccccccceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 87 ISTELKGTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 87 ~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+.+.-+|..+.|+|++|+||||+++.++.....
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 344467999999999999999999999876543
No 433
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.44 E-value=0.038 Score=47.63 Aligned_cols=26 Identities=12% Similarity=-0.152 Sum_probs=23.0
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
++.+.+++|+|||||||.+-.++.++
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 57889999999999999998888765
No 434
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.42 E-value=0.031 Score=44.60 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=45.33 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999998875
No 436
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.35 E-value=0.036 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999999874
No 437
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.33 E-value=0.0096 Score=51.70 Aligned_cols=24 Identities=29% Similarity=0.128 Sum_probs=19.9
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+++|+|++||||||+.++++-.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 356789999999999999997533
No 438
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.31 E-value=0.038 Score=44.14 Aligned_cols=23 Identities=22% Similarity=-0.055 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999998864
No 439
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.30 E-value=0.033 Score=53.94 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=21.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|.|+|+.|.||||+|+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47899999999999999999995
No 440
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.30 E-value=0.036 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 441
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.034 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 347899999999999999999864
No 442
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.28 E-value=0.036 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=20.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.+..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999987764
No 443
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.27 E-value=0.034 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999864
No 444
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.26 E-value=0.035 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.085 Sum_probs=22.9
Q ss_pred ccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+.+..++|+|+|||||||+...+...+
T Consensus 162 l~~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 162 LTRRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp HTBSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988776554
No 445
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.26 E-value=0.032 Score=50.00 Aligned_cols=24 Identities=25% Similarity=0.097 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.||+||||+.+.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHC
Confidence 456899999999999999999964
No 446
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.25 E-value=0.038 Score=45.41 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=20.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999864
No 447
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.24 E-value=0.032 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.074 Sum_probs=21.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
....|.|+|++|+||||+++.++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999754
No 448
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.23 E-value=0.036 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46799999999999999999864
No 449
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.23 E-value=0.038 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
+...|+|+|.+|+||||+.+.|.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999885
No 450
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.23 E-value=0.038 Score=44.89 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999998864
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.18 E-value=0.05 Score=43.60 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+...+|+|+.||||||+..++.=.|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999988876444
No 452
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.17 E-value=0.028 Score=55.47 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.2
Q ss_pred cccceeEEEeeccchHHhhhhHHHHh
Q 023776 90 ELKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 90 ~~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.+.-+.|+|+|++||||||+.+.|+-
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~~I~G 67 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLEALSG 67 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred cccCCeEEEECCCCChHHHHHHHHhC
Confidence 34556699999999999999999975
No 453
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.14 E-value=0.034 Score=57.98 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=22.4
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+|..++|+|++||||||+.+.|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999999983
No 454
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.13 E-value=0.031 Score=58.21 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.|..++|+|++||||||+.+.|+-
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaG 721 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTG 721 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 678999999999999999999964
No 455
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.12 E-value=0.035 Score=45.10 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.2
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
.....|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999998854
No 456
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.11 E-value=0.044 Score=44.63 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhc
Confidence 46799999999999999999875
No 457
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.09 E-value=0.041 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.171 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999998864
No 458
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.07 E-value=0.04 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+...|..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999875
No 459
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.06 E-value=0.037 Score=47.95 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.9
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 347899999999999999998853
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.00 E-value=0.043 Score=44.52 Aligned_cols=23 Identities=26% Similarity=0.158 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999998864
No 461
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.00 E-value=0.044 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=20.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999998864
No 462
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.00 E-value=0.048 Score=51.51 Aligned_cols=36 Identities=14% Similarity=0.038 Sum_probs=27.8
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|.+.. .++.++..++|.|.||+||||++..++...
T Consensus 189 ~LD~~l---gGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLI---GTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHH---CCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhc---CCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 454444 244578999999999999999999988643
No 463
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.99 E-value=0.043 Score=47.76 Aligned_cols=33 Identities=21% Similarity=-0.095 Sum_probs=25.4
Q ss_pred eeEEEeeccchHHhhhhHHHHhhh---hhh--hccCcc
Q 023776 94 TSVFLVGMNNAIKTHLGKFLADAL---RYY--YFDSDS 126 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~~L---g~~--~iD~D~ 126 (277)
.+|++.|.+|+||||++-.+|..+ |+. ++|.|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 569999999999999988888655 433 456663
No 464
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.96 E-value=0.047 Score=45.26 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=20.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999988864
No 465
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.96 E-value=0.04 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=19.5
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
..|+|+|++|+||||+.+.|..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5679999999999999999863
No 466
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.95 E-value=0.044 Score=44.71 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
....|+|+|.+|+||||+.+.|..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHh
Confidence 346799999999999999988864
No 467
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.92 E-value=0.041 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeeEEEEECcCCCCHHHHHHHHhc
Confidence 457899999999999999999865
No 468
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.90 E-value=0.043 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999998864
No 469
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=92.87 E-value=0.045 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.8
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999998874
No 470
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.83 E-value=0.037 Score=44.94 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999998864
No 471
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.81 E-value=0.045 Score=46.23 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 357899999999999999998864
No 472
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.81 E-value=0.047 Score=50.40 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=22.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
....++|+|++||||||+.+.+...+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998644
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.80 E-value=0.038 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.2
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
+...|+++|.+|+||||+.+.|.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999874
No 474
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.78 E-value=0.049 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999875
No 475
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.77 E-value=0.046 Score=45.28 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 36899999999999999998865
No 476
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.75 E-value=0.045 Score=52.58 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=29.6
Q ss_pred cccccccccceeEEEeeccchHHhhhhHHHHhhhh
Q 023776 84 AADISTELKGTSVFLVGMNNAIKTHLGKFLADALR 118 (277)
Q Consensus 84 ~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~Lg 118 (277)
...+.+..++..+.|.|++|+||||+++.|+....
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45566778899999999999999999999986544
No 477
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.74 E-value=0.051 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998864
No 478
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=92.73 E-value=0.028 Score=56.00 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=20.0
Q ss_pred cceeEEEeeccchHHhhhhHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFL 113 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~L 113 (277)
++..++|+|++||||||+.+.+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTT
T ss_pred CCCEEEEEeeCCCCHHHHHHHH
Confidence 6789999999999999999765
No 479
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.70 E-value=0.047 Score=44.45 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46799999999999999998864
No 480
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.70 E-value=0.046 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.369 Sum_probs=19.9
Q ss_pred eeEEEeeccchHHhhhhHHHHh
Q 023776 94 TSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 94 ~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+.|+|+|.+||||||+.+.|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999999964
No 481
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.69 E-value=0.062 Score=48.42 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=22.4
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.+.++|.|++|+||||+++.|++.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999999864
No 482
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.67 E-value=0.037 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.8
Q ss_pred ceeEEEeeccchHHhhhhHHHH
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA 114 (277)
...|+|+|.+|+||||+.+.|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999885
No 483
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.66 E-value=0.052 Score=45.18 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999998865
No 484
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.64 E-value=0.047 Score=45.03 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999999864
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=92.62 E-value=0.05 Score=45.43 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+|+||||+.+.|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 347899999999999999999864
No 486
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=92.61 E-value=0.049 Score=51.06 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.6
Q ss_pred ccceeEEEeeccchHHhhhhHHHHh
Q 023776 91 LKGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 91 ~~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
-++..|+|+|+||+||||+-+.|..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 3578999999999999999999975
No 487
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.57 E-value=0.044 Score=44.81 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.3
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36799999999999999999864
No 488
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.55 E-value=0.034 Score=44.68 Aligned_cols=23 Identities=17% Similarity=0.089 Sum_probs=10.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999998864
No 489
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.54 E-value=0.043 Score=58.92 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.1
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
+|..++|+|++||||||+.+.|...+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccc
Confidence 68999999999999999999996543
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=92.53 E-value=0.067 Score=45.05 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHhhhhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADALRY 119 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~Lg~ 119 (277)
+...+|+|+.||||||+..++.-.|+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999988766654
No 491
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.50 E-value=0.052 Score=48.03 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.||+||||+-+.|..
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 36799999999999999999975
No 492
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.40 E-value=0.052 Score=50.25 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.5
Q ss_pred cceeEEEeeccchHHhhhhHHHH
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLA 114 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA 114 (277)
+...|+|.|.+||||||++|.+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 35789999999999999999984
No 493
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.39 E-value=0.06 Score=44.34 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.6
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 36799999999999999998875
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.35 E-value=0.061 Score=47.34 Aligned_cols=24 Identities=33% Similarity=0.256 Sum_probs=21.3
Q ss_pred cceeEEEeeccchHHhhhhHHHHh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
+...|+|+|.+||||||+.+.|..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999999965
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.34 E-value=0.039 Score=59.23 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.7
Q ss_pred cceeEEEeeccchHHhhhhHHHHhh
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
+|..|.|+|++||||||+.+.|..-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999999999653
No 496
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.27 E-value=0.061 Score=43.72 Aligned_cols=24 Identities=25% Similarity=0.058 Sum_probs=21.1
Q ss_pred ceeEEEeeccchHHhhhhHHHHhh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLADA 116 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~~ 116 (277)
...|+|+|.+|+||||+.+.|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999999753
No 497
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.23 E-value=0.054 Score=48.05 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=27.6
Q ss_pred cceeEEEeeccchHHhhhhHHHHhhhh---h--hhccCcc
Q 023776 92 KGTSVFLVGMNNAIKTHLGKFLADALR---Y--YYFDSDS 126 (277)
Q Consensus 92 ~~~~I~L~G~~GSGKSTvak~LA~~Lg---~--~~iD~D~ 126 (277)
+++.|.++|-.|+||||++-.||..|. . .++|.|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 457888889999999999999987663 3 3577774
No 498
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.21 E-value=0.071 Score=50.59 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=28.2
Q ss_pred hhhhhcccccccccceeEEEeeccchHHhhhhHHHHhhh
Q 023776 79 AVKKKAADISTELKGTSVFLVGMNNAIKTHLGKFLADAL 117 (277)
Q Consensus 79 ~l~~~~~~~~~~~~~~~I~L~G~~GSGKSTvak~LA~~L 117 (277)
.|.+..- ++.++..++|.|.||+||||++-.++...
T Consensus 186 ~LD~~lg---Gl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 186 ELDRMTY---GYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHS---SBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHhhcC---CCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 4555442 34578999999999999999999988654
No 499
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.11 E-value=0.068 Score=44.16 Aligned_cols=23 Identities=22% Similarity=0.080 Sum_probs=20.5
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 46799999999999999998864
No 500
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.11 E-value=0.056 Score=47.27 Aligned_cols=23 Identities=35% Similarity=0.197 Sum_probs=20.7
Q ss_pred ceeEEEeeccchHHhhhhHHHHh
Q 023776 93 GTSVFLVGMNNAIKTHLGKFLAD 115 (277)
Q Consensus 93 ~~~I~L~G~~GSGKSTvak~LA~ 115 (277)
...|+|+|.+|+||||+.+.|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999964
Done!