BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023777
MNFPLFYLFIYSKVCPRATFLLFCPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLG
FIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFY
LLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTE
RGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFM
AKYYCVRFHALFGAALVAGLITARILVTKHIPKLVFQ

High Scoring Gene Products

Symbol, full name Information P value
ABC4
AT1G60600 		protein from Arabidopsis thaliana 1.6e-72

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023777
        (277 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2036484 - symbol:ABC4 "ABERRANT CHLOROPLAST DE...   733  1.6e-72   1


>TAIR|locus:2036484 [details] [associations]
            symbol:ABC4 "ABERRANT CHLOROPLAST DEVELOPMENT 4"
            species:3702 "Arabidopsis thaliana" [GO:0004659 "prenyltransferase
            activity" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0016021 "integral to membrane" evidence=IEA]
            [GO:0009507 "chloroplast" evidence=IDA] [GO:0009772 "photosynthetic
            electron transport in photosystem II" evidence=IMP] [GO:0010236
            "plastoquinone biosynthetic process" evidence=IMP] [GO:0042372
            "phylloquinone biosynthetic process" evidence=IMP] [GO:0046428
            "1,4-dihydroxy-2-naphthoate octaprenyltransferase activity"
            evidence=ISS] [GO:0010103 "stomatal complex morphogenesis"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0016556 "mRNA modification" evidence=RCA] [GO:0019288
            "isopentenyl diphosphate biosynthetic process,
            mevalonate-independent pathway" evidence=RCA] InterPro:IPR000537
            Pfam:PF01040 GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0009507 GO:GO:0031969 EMBL:AC002292 GO:GO:0009772
            GO:GO:0042372 EMBL:BT012196 EMBL:AK227267 IPI:IPI00528972
            IPI:IPI00891712 RefSeq:NP_001117518.1 RefSeq:NP_176259.2
            UniGene:At.36625 IntAct:Q0WUA3 STRING:Q0WUA3 PRIDE:Q0WUA3
            EnsemblPlants:AT1G60600.2 GeneID:842354 KEGG:ath:AT1G60600
            TAIR:At1g60600 eggNOG:COG1575 HOGENOM:HOG000232475
            InParanoid:Q0WUA3 KO:K02548 OMA:LIWRAIK PhylomeDB:Q0WUA3
            ProtClustDB:PLN02922 Genevestigator:Q0WUA3 GO:GO:0046428
            GO:GO:0010236 InterPro:IPR011937 TIGRFAMs:TIGR02235 Uniprot:Q0WUA3
        Length = 382

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 139/223 (62%), Positives = 166/223 (74%)

Query:    42 LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
             L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct:   161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query:   102 LGEPLCXXXXXXXXXXXXYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
             LGEPLC            YLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQV
Sbjct:   221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQV 280

Query:   162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
              +GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct:   281 -DGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 339

Query:   222 KLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264
              LV SYVE++HKD GKIFMAKYYCVR HAL GAAL  GL+ AR
Sbjct:   340 NLVSSYVEKHHKDNGKIFMAKYYCVRLHALLGAALSLGLVIAR 382


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.143   0.448    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      277       265   0.00093  114 3  11 21  0.48    32
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  191 KB (2108 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.26u 0.09s 21.35t   Elapsed:  00:00:01
  Total cpu time:  21.26u 0.09s 21.35t   Elapsed:  00:00:01
  Start:  Fri May 10 20:27:32 2013   End:  Fri May 10 20:27:33 2013

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