BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023777
         (277 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q0WUA3|MENA_ARATH 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic
           OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2
          Length = 382

 Score =  291 bits (744), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 140/206 (67%), Positives = 166/206 (80%), Gaps = 1/206 (0%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L+GSRTGTL  A   L LG  GL W S+ A N+RAI+LL  A++CGY+YQCPPFRLSYQG
Sbjct: 161 LVGSRTGTLAAAITSLALGVSGLVWTSLNASNIRAILLLASAILCGYVYQCPPFRLSYQG 220

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGEPLCFAAFGPFATTAFYLLLGS+ E   L ++  VLS+S+LVG TTSLILFCSHFHQ 
Sbjct: 221 LGEPLCFAAFGPFATTAFYLLLGSSSEMRHLPLSGRVLSSSVLVGFTTSLILFCSHFHQ- 279

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIG 221
           V+GD  VGK SPLVRLGTE+G+ VV+W + +LYS+L  +GL+R LPL C  +C +T P+G
Sbjct: 280 VDGDLAVGKYSPLVRLGTEKGAFVVRWTIRLLYSMLLVLGLTRILPLPCTLMCFLTLPVG 339

Query: 222 KLVVSYVEENHKDKGKIFMAKYYCVR 247
            LV SYVE++HKD GKIFMAKYYCVR
Sbjct: 340 NLVSSYVEKHHKDNGKIFMAKYYCVR 365


>sp|P73962|MENA_SYNY3 Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
           OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=menA
           PE=3 SV=1
          Length = 307

 Score =  124 bits (310), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/219 (36%), Positives = 117/219 (53%), Gaps = 11/219 (5%)

Query: 42  LLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG 101
           L G+R    + +   L+ G +GL   S  A +   + L+  A+  GY YQ PPFRL Y G
Sbjct: 92  LTGNRNLVFLISNFFLLAGVLGLMSMSWRAQDWTVLELIGVAIFLGYTYQGPPFRLGYLG 151

Query: 102 LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQV 161
           LGE +C   FGP A  A Y        +   S +  +L+ S+ VG++T++ILFCSHFHQ 
Sbjct: 152 LGELICLITFGPLAIAAAYY-------SQSQSFSWNLLTPSVFVGISTAIILFCSHFHQ- 203

Query: 162 VEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-LSRALPLSCIFLCAMTSPI 220
           VE D   GK SP+VRLGT+ GS V+  +V+ LY L+ AIG L    P   + + A + P 
Sbjct: 204 VEDDLAAGKKSPIVRLGTKLGSQVLTLSVVSLY-LITAIGVLCHQAPWQTLLIIA-SLPW 261

Query: 221 GKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 259
              ++ +V + H    ++   K+  V  H   G  + AG
Sbjct: 262 AVQLIRHVGQYHDQPEQVSNCKFIAVNLHFFSGMLMAAG 300


>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
           PE=2 SV=1
          Length = 387

 Score = 33.1 bits (74), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 88  YIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS-TRENLCLSITATVLSASLLVG 146
           YIY  PP +L   G          G FA  A Y+ L     + L  ++T  V+  +LL  
Sbjct: 223 YIYSAPPLKLKQNGW--------VGNFALGASYISLPWWAGQALFGTLTPDVVVLTLLYS 274

Query: 147 LTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKW 188
           +    I   + F  V EGDR +G  S  V  GTE      KW
Sbjct: 275 IAGLGIAIVNDFKSV-EGDRALGLQSLPVAFGTE----TAKW 311


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.331    0.143    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,432,178
Number of Sequences: 539616
Number of extensions: 3577503
Number of successful extensions: 9495
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9485
Number of HSP's gapped (non-prelim): 14
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)