Query 023777
Match_columns 277
No_of_seqs 157 out of 1146
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07419 1,4-dihydroxy-2-napht 100.0 6.3E-49 1.4E-53 366.5 25.0 245 11-266 42-302 (304)
2 TIGR02235 menA_cyano-plnt 1,4- 100.0 2E-48 4.4E-53 360.3 23.1 240 11-261 29-284 (285)
3 PLN02922 prenyltransferase 100.0 2.6E-47 5.5E-52 357.3 23.0 252 11-263 45-314 (315)
4 COG1575 MenA 1,4-dihydroxy-2-n 100.0 1.4E-45 3E-50 340.6 23.7 244 10-265 37-302 (303)
5 PRK13387 1,4-dihydroxy-2-napht 100.0 2.2E-45 4.8E-50 344.6 23.9 244 10-264 32-315 (317)
6 TIGR00751 menA 1,4-dihydroxy-2 100.0 6.8E-45 1.5E-49 336.6 20.9 238 10-259 21-284 (284)
7 PRK05951 ubiA prenyltransferas 100.0 9.9E-38 2.2E-42 290.1 23.3 238 11-265 34-292 (296)
8 PRK06080 1,4-dihydroxy-2-napht 100.0 1.2E-35 2.7E-40 274.6 26.2 206 46-263 86-292 (293)
9 PRK13105 ubiA prenyltransferas 100.0 1.4E-28 3E-33 227.7 23.4 196 46-260 77-277 (282)
10 TIGR01476 chlor_syn_BchG bacte 100.0 4.6E-28 9.9E-33 223.4 22.9 201 39-256 71-277 (283)
11 TIGR02056 ChlG chlorophyll syn 100.0 6.7E-28 1.4E-32 225.3 22.0 199 40-253 88-296 (306)
12 PRK07566 bacteriochlorophyll/c 99.9 3.9E-24 8.6E-29 200.5 22.6 207 39-263 98-310 (314)
13 PLN00012 chlorophyll synthetas 99.9 8.5E-23 1.9E-27 195.7 24.2 198 46-256 167-368 (375)
14 PRK12872 ubiA prenyltransferas 99.9 6.3E-23 1.4E-27 188.7 21.0 196 47-254 77-275 (285)
15 PRK12887 ubiA tocopherol phyty 99.9 9E-22 2E-26 184.3 20.7 164 39-209 86-254 (308)
16 PRK13591 ubiA prenyltransferas 99.9 6.5E-21 1.4E-25 177.8 17.6 150 62-230 111-271 (307)
17 PRK12392 bacteriochlorophyll c 99.9 3E-20 6.6E-25 175.6 21.1 142 46-198 94-241 (331)
18 KOG4581 Predicted membrane pro 99.9 6.7E-22 1.4E-26 176.5 7.4 212 44-273 143-358 (359)
19 PRK12875 ubiA prenyltransferas 99.8 4.7E-19 1E-23 164.2 22.2 107 81-198 120-226 (282)
20 PRK12847 ubiA 4-hydroxybenzoat 99.8 6.9E-18 1.5E-22 156.1 20.9 194 46-263 91-284 (285)
21 PRK12884 ubiA prenyltransferas 99.8 2.2E-17 4.7E-22 151.8 21.7 189 46-258 81-270 (279)
22 PF01040 UbiA: UbiA prenyltran 99.8 9.4E-18 2E-22 150.1 16.9 123 47-184 70-193 (257)
23 TIGR01475 ubiA_other putative 99.7 4.5E-16 9.8E-21 143.7 20.6 196 46-265 82-281 (282)
24 PRK12883 ubiA prenyltransferas 99.7 8.5E-16 1.8E-20 141.4 21.8 126 46-190 81-207 (277)
25 PRK12871 ubiA prenyltransferas 99.7 9.8E-16 2.1E-20 143.0 21.5 198 46-263 96-294 (297)
26 PRK12869 ubiA protoheme IX far 99.7 2.2E-15 4.8E-20 139.2 22.7 132 46-193 82-215 (279)
27 PRK12888 ubiA prenyltransferas 99.7 2.2E-15 4.7E-20 139.8 21.6 197 46-265 85-282 (284)
28 PRK09573 (S)-2,3-di-O-geranylg 99.7 2.6E-15 5.5E-20 138.5 20.3 165 46-229 81-247 (279)
29 TIGR01473 cyoE_ctaB protoheme 99.7 7.8E-15 1.7E-19 135.3 23.0 130 46-190 81-211 (280)
30 PRK12848 ubiA 4-hydroxybenzoat 99.7 7E-15 1.5E-19 136.0 19.9 194 46-263 88-281 (282)
31 TIGR01474 ubiA_proteo 4-hydrox 99.7 2E-14 4.3E-19 133.0 21.6 195 46-264 86-280 (281)
32 PLN02878 homogentisate phytylt 99.6 2.7E-14 5.8E-19 131.8 20.4 151 46-201 67-220 (280)
33 PRK12882 ubiA prenyltransferas 99.6 3.4E-14 7.4E-19 130.7 20.3 134 46-196 82-216 (276)
34 PRK12878 ubiA 4-hydroxybenzoat 99.6 4.5E-14 9.9E-19 132.8 21.4 193 46-264 118-312 (314)
35 PRK12886 ubiA prenyltransferas 99.6 7.8E-14 1.7E-18 129.8 22.7 123 70-204 107-229 (291)
36 PRK12870 ubiA 4-hydroxybenzoat 99.6 3.9E-14 8.5E-19 131.7 19.8 198 46-265 92-289 (290)
37 PRK13595 ubiA prenyltransferas 99.6 6.4E-14 1.4E-18 130.3 20.8 188 46-257 91-279 (292)
38 PRK12874 ubiA prenyltransferas 99.6 2.7E-13 5.7E-18 126.3 22.3 196 46-265 93-289 (291)
39 PRK04375 protoheme IX farnesyl 99.6 5.1E-13 1.1E-17 124.5 23.0 129 46-189 90-219 (296)
40 PRK13106 ubiA prenyltransferas 99.3 1.5E-10 3.3E-15 108.4 20.5 202 46-267 95-298 (300)
41 PRK13362 protoheme IX farnesyl 99.3 1.9E-09 4.1E-14 101.3 23.0 125 46-185 93-218 (306)
42 COG0382 UbiA 4-hydroxybenzoate 99.3 1.3E-09 2.9E-14 101.0 21.1 144 46-207 93-237 (289)
43 PLN02809 4-hydroxybenzoate non 99.2 3.5E-09 7.7E-14 98.7 21.0 195 46-266 91-288 (289)
44 PRK12895 ubiA prenyltransferas 99.1 6.1E-09 1.3E-13 97.0 20.1 197 46-266 83-282 (286)
45 PRK12876 ubiA prenyltransferas 99.0 5.3E-08 1.1E-12 91.3 21.3 133 46-195 93-230 (300)
46 PRK12873 ubiA prenyltransferas 98.7 3.5E-06 7.5E-11 79.0 19.8 136 46-195 90-227 (294)
47 PLN02776 prenyltransferase 98.6 1.6E-05 3.5E-10 75.9 22.4 131 46-192 75-208 (341)
48 PRK13592 ubiA prenyltransferas 98.2 0.00015 3.2E-09 68.0 17.3 137 38-195 78-231 (299)
49 COG0109 CyoE Polyprenyltransfe 97.1 0.019 4.1E-07 54.1 14.2 170 46-230 98-269 (304)
50 PRK12324 phosphoribose diphosp 96.5 0.31 6.8E-06 45.8 17.6 111 46-173 92-203 (295)
51 COG0382 UbiA 4-hydroxybenzoate 94.6 0.77 1.7E-05 42.6 12.8 34 136-170 47-80 (289)
52 PRK08238 hypothetical protein; 94.3 4.4 9.6E-05 40.6 18.0 105 46-170 272-377 (479)
53 PRK12884 ubiA prenyltransferas 92.8 1.8 3.9E-05 39.7 11.6 43 137-181 38-80 (279)
54 PRK12873 ubiA prenyltransferas 92.1 2.2 4.8E-05 40.1 11.5 44 137-181 45-89 (294)
55 PF01040 UbiA: UbiA prenyltran 92.0 2.5 5.4E-05 37.4 11.2 38 143-181 30-68 (257)
56 TIGR01475 ubiA_other putative 91.8 5.6 0.00012 36.7 13.7 47 137-184 37-87 (282)
57 PRK12869 ubiA protoheme IX far 91.6 7.1 0.00015 36.1 14.1 33 137-170 37-69 (279)
58 KOG1381 Para-hydroxybenzoate-p 91.5 1.3 2.8E-05 41.6 9.0 173 70-266 168-346 (353)
59 TIGR01473 cyoE_ctaB protoheme 91.3 9.6 0.00021 35.1 14.7 54 138-192 37-94 (280)
60 PRK12324 phosphoribose diphosp 90.8 3.3 7.2E-05 38.9 11.2 53 139-192 49-105 (295)
61 PRK12882 ubiA prenyltransferas 90.4 6.7 0.00014 36.0 12.7 40 138-179 40-79 (276)
62 PRK12895 ubiA prenyltransferas 90.4 10 0.00022 35.6 13.9 34 137-171 38-71 (286)
63 TIGR01474 ubiA_proteo 4-hydrox 89.9 9.3 0.0002 35.4 13.2 46 138-184 42-88 (281)
64 PLN02809 4-hydroxybenzoate non 89.8 6.7 0.00014 36.7 12.3 48 138-186 47-95 (289)
65 PRK04375 protoheme IX farnesyl 89.4 13 0.00028 34.7 13.9 55 138-193 46-104 (296)
66 TIGR02056 ChlG chlorophyll syn 89.2 3.7 8.1E-05 38.5 10.2 46 146-193 64-112 (306)
67 PRK12847 ubiA 4-hydroxybenzoat 88.7 5.4 0.00012 36.9 10.8 46 138-184 47-93 (285)
68 PRK09573 (S)-2,3-di-O-geranylg 88.5 18 0.0004 33.2 14.2 55 138-193 39-95 (279)
69 PLN02776 prenyltransferase 88.4 21 0.00045 34.4 14.8 41 138-179 31-72 (341)
70 PRK12875 ubiA prenyltransferas 87.9 22 0.00048 33.2 14.3 20 153-173 62-81 (282)
71 PRK13362 protoheme IX farnesyl 87.9 23 0.0005 33.4 14.6 38 142-180 53-91 (306)
72 PRK13592 ubiA prenyltransferas 85.9 6.3 0.00014 37.3 9.5 62 132-194 42-105 (299)
73 PRK12888 ubiA prenyltransferas 85.8 30 0.00065 32.2 14.8 45 138-183 41-86 (284)
74 PRK12886 ubiA prenyltransferas 85.7 31 0.00067 32.2 14.3 46 137-183 43-89 (291)
75 PRK12883 ubiA prenyltransferas 85.6 13 0.00028 34.1 11.4 44 144-189 45-91 (277)
76 PRK13595 ubiA prenyltransferas 85.0 15 0.00033 34.6 11.6 25 147-172 58-82 (292)
77 PRK12872 ubiA prenyltransferas 84.8 6.6 0.00014 36.0 9.1 32 139-171 39-70 (285)
78 PRK12848 ubiA 4-hydroxybenzoat 84.5 33 0.00072 31.6 15.0 29 141-170 47-75 (282)
79 PRK08238 hypothetical protein; 84.4 17 0.00037 36.5 12.3 56 137-193 227-286 (479)
80 PRK12876 ubiA prenyltransferas 84.1 38 0.00083 32.0 14.0 43 138-181 49-92 (300)
81 PRK12870 ubiA 4-hydroxybenzoat 84.0 17 0.00036 33.9 11.5 43 138-181 48-91 (290)
82 PRK13105 ubiA prenyltransferas 82.3 18 0.00038 33.9 10.8 40 135-175 32-72 (282)
83 PRK12878 ubiA 4-hydroxybenzoat 82.3 39 0.00084 31.9 13.3 32 138-170 74-105 (314)
84 PRK12874 ubiA prenyltransferas 81.6 46 0.00099 31.1 14.2 35 135-170 45-80 (291)
85 PRK13591 ubiA prenyltransferas 79.1 31 0.00066 32.9 11.3 29 141-170 63-91 (307)
86 TIGR01476 chlor_syn_BchG bacte 77.9 26 0.00056 32.2 10.4 43 146-189 48-92 (283)
87 PRK13106 ubiA prenyltransferas 77.6 64 0.0014 30.4 14.5 32 138-170 51-82 (300)
88 PRK05951 ubiA prenyltransferas 77.5 34 0.00074 31.9 11.2 38 134-172 37-75 (296)
89 PRK12887 ubiA tocopherol phyty 77.4 16 0.00034 34.5 8.9 26 152-179 69-94 (308)
90 PRK07566 bacteriochlorophyll/c 74.6 28 0.00062 32.7 9.9 46 147-193 76-123 (314)
91 PRK12871 ubiA prenyltransferas 74.6 48 0.001 31.1 11.3 26 142-168 47-72 (297)
92 PLN00012 chlorophyll synthetas 72.9 48 0.001 32.3 11.2 23 146-169 133-155 (375)
93 PRK12392 bacteriochlorophyll c 67.6 82 0.0018 30.1 11.4 44 149-194 63-109 (331)
94 PRK13387 1,4-dihydroxy-2-napht 59.9 1.6E+02 0.0034 27.9 14.9 35 134-169 36-71 (317)
95 PRK06080 1,4-dihydroxy-2-napht 51.0 93 0.002 28.6 8.5 24 140-164 42-65 (293)
96 PLN02878 homogentisate phytylt 41.0 96 0.0021 29.2 6.8 33 147-181 34-66 (280)
97 COG0109 CyoE Polyprenyltransfe 40.6 3.3E+02 0.0072 26.0 11.5 88 134-227 49-141 (304)
98 PRK10299 PhoPQ regulatory prot 37.8 35 0.00075 23.5 2.4 32 140-172 9-40 (47)
99 cd00867 Trans_IPPS Trans-Isopr 36.4 18 0.0004 31.7 1.2 29 149-178 159-197 (236)
100 TIGR00751 menA 1,4-dihydroxy-2 33.6 4E+02 0.0086 24.8 11.0 30 134-164 25-55 (284)
101 TIGR01943 rnfA electron transp 28.9 4.1E+02 0.0089 23.5 8.9 91 178-274 67-165 (190)
102 PF05915 DUF872: Eukaryotic pr 28.1 1E+02 0.0022 25.1 4.2 13 48-60 42-54 (115)
103 COG3389 Uncharacterized protei 27.0 4.6E+02 0.0099 24.3 8.5 59 173-231 51-109 (277)
104 PHA02680 ORF090 IMV phosphoryl 26.6 1E+02 0.0022 24.2 3.6 30 24-61 28-57 (91)
105 PF15169 DUF4564: Domain of un 24.7 35 0.00077 30.2 1.0 69 94-174 12-81 (187)
106 cd00385 Isoprenoid_Biosyn_C1 I 24.0 17 0.00036 30.6 -1.2 34 147-181 151-186 (243)
107 PRK07419 1,4-dihydroxy-2-napht 23.5 6.3E+02 0.014 23.8 9.8 33 134-167 45-80 (304)
108 PF07895 DUF1673: Protein of u 23.0 4.8E+02 0.01 23.1 7.9 34 199-232 73-107 (205)
109 PRK05151 electron transport co 22.3 5.5E+02 0.012 22.8 8.9 88 178-274 68-166 (193)
110 PF03366 YEATS: YEATS family; 22.3 29 0.00062 26.6 -0.1 16 91-106 39-54 (84)
No 1
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=6.3e-49 Score=366.55 Aligned_cols=245 Identities=37% Similarity=0.582 Sum_probs=224.6
Q ss_pred cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhchH
Q 023777 11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGNL 74 (277)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~ 74 (277)
+|+.+|.++++.+.+.+..+ .|+|.+....|.++++|++.+.+..|+++++ +|++ ++..+||
T Consensus 42 ~~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~--L~~~~g~ 119 (304)
T PRK07419 42 TGVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKFHSVVNLTGNKSLVFWLANLFLLLGLLGILA--IALQSDW 119 (304)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccccCcHHHHHHHHHHHHHHHHHHHHH--HHHhhcH
Confidence 47899999999988887755 3444344566888899999999999999996 8887 6679999
Q ss_pred HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023777 75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF 154 (277)
Q Consensus 75 ~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill 154 (277)
+++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++ +++..++.|+|.|++++++|+
T Consensus 120 ~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~-------~~~~~~~~sl~~gll~~~IL~ 192 (304)
T PRK07419 120 TVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPS-------WSLIPLAASIILGLATSLILF 192 (304)
T ss_pred HHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023777 155 CSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 234 (277)
Q Consensus 155 ~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~ 234 (277)
+||+||+ |+||++||||+||++|+|+|+++|.++...+|++++..+..|..|+++++ +++++|++.++.|++.+++++
T Consensus 193 ~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll-~ll~lPl~~~~~~~~~~~~~~ 270 (304)
T PRK07419 193 CSHFHQV-EDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL-SLLSLPFAIKLIRLVRENHDQ 270 (304)
T ss_pred HcCCcch-hhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 9999999 99999999999999999999999999999999999999999999999877 499999999999999887556
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 235 KGKIFMAKYYCVRFHALFGAALVAGLITARIL 266 (277)
Q Consensus 235 ~~~~~~~~~~t~k~~~l~~lll~iglll~~~~ 266 (277)
++++.+.++.|++.++++++++++|++++..+
T Consensus 271 ~~~l~~~l~~t~~~~~l~g~l~~l~~~l~~~~ 302 (304)
T PRK07419 271 PEKVSNSKFIAVRFHFWSGLLLSLGLILAYLL 302 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77888999999999999999999999997763
No 2
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=100.00 E-value=2e-48 Score=360.30 Aligned_cols=240 Identities=35% Similarity=0.558 Sum_probs=221.2
Q ss_pred cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHH-HHHHHHHHhhchH
Q 023777 11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGF-IGLTWASVEAGNL 74 (277)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~ 74 (277)
+|+.+|.+.++.+++.+..+ .|++++....|.+++++++++.+..++++++ +|++ ++..++|
T Consensus 29 ~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~--L~~~~~~ 106 (285)
T TIGR02235 29 GGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLVFWLANFFLLIGLVGIAA--LSWRWQI 106 (285)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHHHHHHHHHHHHHHHHHHH--HHHHhhH
Confidence 47899999999998877665 3555555667888999999999999999996 7777 6778999
Q ss_pred HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHH
Q 023777 75 RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILF 154 (277)
Q Consensus 75 ~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill 154 (277)
+++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|+++ ++|..++.|+|.|+.++++|+
T Consensus 107 ~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~-------~~~~~~l~sl~~gl~~~~iL~ 179 (285)
T TIGR02235 107 TVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQS-------FSLIPWKASILVGLATTLILF 179 (285)
T ss_pred HHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCc-------CcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccC
Q 023777 155 CSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKD 234 (277)
Q Consensus 155 ~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~ 234 (277)
+||+||+ |+|+++||||+||++|+|+|.++|..+...+|++++..+..|..||++++ +++++|++.++.|++++++++
T Consensus 180 ~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll-~ll~lPl~~~~~~~~~~~~~~ 257 (285)
T TIGR02235 180 CSHFHQV-EDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL-ALASIPWAVKLIRLVRQNHNN 257 (285)
T ss_pred hcCCccc-hhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHcCCC
Confidence 9999999 99999999999999999999999999999999999999999999999887 499999999999999887556
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHH
Q 023777 235 KGKIFMAKYYCVRFHALFGAALVAGLI 261 (277)
Q Consensus 235 ~~~~~~~~~~t~k~~~l~~lll~igll 261 (277)
+++..+.+++|++.+.++++++++|++
T Consensus 258 ~~~l~~~l~~t~~~~~~~g~l~~~g~~ 284 (285)
T TIGR02235 258 PEQISNCKFIAVRFHFLSGILLTLGLL 284 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777888999999999999999999976
No 3
>PLN02922 prenyltransferase
Probab=100.00 E-value=2.6e-47 Score=357.34 Aligned_cols=252 Identities=64% Similarity=1.048 Sum_probs=219.0
Q ss_pred cCccccceeeeeeeehhccc---------------cCCcceeeeeeccCCHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 023777 11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGSRTGTLVTAYLLLVLGFIGLTWASVEAGNLR 75 (277)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~ 75 (277)
+|+.+|.+.++++.+++.++ .|++..+...|.+++||++++.++.|+++++.|++.....+++|+
T Consensus 45 ~g~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~ 124 (315)
T PLN02922 45 TGLFDARRYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIR 124 (315)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChH
Confidence 48999999999999988877 232222333577889999999999999999876663222247899
Q ss_pred HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCcc---ccccccchHHHHHHHHHHHHHHHHH
Q 023777 76 AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTR---ENLCLSITATVLSASLLVGLTTSLI 152 (277)
Q Consensus 76 il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~---~~~~~~~~~~~ll~slp~gll~~~i 152 (277)
++.+|++|++++|+||+||+|+||+|+||++++++||++++.++||+|++.. .....+++++.++.|+|.+++++++
T Consensus 125 ~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~i 204 (315)
T PLN02922 125 VILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLI 204 (315)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998831 1111236788999999999999999
Q ss_pred HHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc
Q 023777 153 LFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH 232 (277)
Q Consensus 153 ll~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~ 232 (277)
|++||+||+ |+||++||||+||++|+|+|+++|.++...+|++++..+..|..|+++++.+++++|++.+..+.+++++
T Consensus 205 L~~Nn~rD~-e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~~l~~ll~lpl~~~~~~~~~~~~ 283 (315)
T PLN02922 205 LFCSHFHQI-DGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNH 283 (315)
T ss_pred HHHccCcch-hhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 9999999999999999999999999999999999999999999999865446899999999999998876
Q ss_pred cCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 233 KDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 233 ~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
+++.++.+.++.|++.+.++++++++|++++
T Consensus 284 ~~~~~l~~~~~~t~~~~~l~g~ll~~g~~l~ 314 (315)
T PLN02922 284 KDNAKIFMAKYYCVRLHALFGAALALGLVLA 314 (315)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6677888889999999999999999999865
No 4
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=1.4e-45 Score=340.62 Aligned_cols=244 Identities=20% Similarity=0.290 Sum_probs=213.6
Q ss_pred ccCccccceeeeeeeehhccc---------------cCCcc--eeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHH
Q 023777 10 IYSKVCPRATFLLFCPSVLYS---------------KESHW--LVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWA 67 (277)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~ 67 (277)
+++.++|-.+++++.++...+ .|+|+ +..+.|++.+ ++.+...+..++..++ +|++
T Consensus 37 ~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~-- 114 (303)
T COG1575 37 YGKSFNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVI-- 114 (303)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHH--
Confidence 344789999999999887766 45433 3566677775 4556666666655554 4544
Q ss_pred HHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHH
Q 023777 68 SVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGL 147 (277)
Q Consensus 68 l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gl 147 (277)
+...+||.++.+|.+|+++||+||+||+|++|+|+||++|+++||++++.++||+|+++ ++|..++.|+|+++
T Consensus 115 ~~~~s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~-------~~~~~ll~slp~gi 187 (303)
T COG1575 115 LAALSDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGR-------LSWAILLPSLPVGI 187 (303)
T ss_pred HHHHhhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred HHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHH
Q 023777 148 TTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSY 227 (277)
Q Consensus 148 l~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~ 227 (277)
++++||++||+||+ |+|+|+||+|+|||+|+++++++|..++..+|++.++.++.+..|++.++ .++++|++.|..|.
T Consensus 188 l~~~Il~aNNirDi-e~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll-~ll~~Pl~ir~~r~ 265 (303)
T COG1575 188 LIANILLANNLRDI-EEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL-FLLALPLAIRAARP 265 (303)
T ss_pred HHHHHHHhcccccc-hhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999999999999999999988888866 49999999999999
Q ss_pred HHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 228 VEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 228 ~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
+++++ .+.+..+..+.+.|...++++++.+|+++..+
T Consensus 266 v~~~~-~~~~~~p~l~~~~~~~~~~~~l~~~~i~~~~l 302 (303)
T COG1575 266 VRQNQ-VPATLVPMLKNTVKANLLWNLLLAVGILLSQL 302 (303)
T ss_pred HHhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99984 45577888889999999999999999887653
No 5
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=100.00 E-value=2.2e-45 Score=344.56 Aligned_cols=244 Identities=17% Similarity=0.135 Sum_probs=213.7
Q ss_pred ccCccccceeeeeeeehhccc---------------cCCcceeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777 10 IYSKVCPRATFLLFCPSVLYS---------------KESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV 69 (277)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~ 69 (277)
.+|+.+|.+.++++.+.+..+ +|++.+....|.+++ ||+++..++.|+++++ +|++ ++
T Consensus 32 ~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~--L~ 109 (317)
T PRK13387 32 VAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVY--LC 109 (317)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 356889988888888876444 333334444555553 7999999999999997 8888 67
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHH----------
Q 023777 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVL---------- 139 (277)
Q Consensus 70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~l---------- 139 (277)
.++||.++++|++|++++++||+||+|+||+|+||++++++||++++.++||+|+++ +++..+
T Consensus 110 ~~~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~-------~~~~~~~~~~~~~~~~ 182 (317)
T PRK13387 110 MNTSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNT-------ITIESLLFQGEMFTIQ 182 (317)
T ss_pred HHhcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCC-------CchHHHHhcccchhhc
Confidence 899999999999999999999999999999999999999999999999999999987 444433
Q ss_pred ----------HHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023777 140 ----------SASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLS 209 (277)
Q Consensus 140 ----------l~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~ 209 (277)
+.|+|.+++++++|++||+||+ |+||++||||+|+++|+|+|+++|..+...+|++++..+..|.+|++
T Consensus 183 ~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~-e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~ 261 (317)
T PRK13387 183 GNLIAIIAIGVISLPIIFTIANIMLANNLRDL-DEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMGYISPW 261 (317)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCccc-hhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 210 CIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264 (277)
Q Consensus 210 ~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~ 264 (277)
+++ +++++|++.++.|+++++++++++..+..+.+.+.+..+++++++|++++.
T Consensus 262 ~ll-~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~ll~~ 315 (317)
T PRK13387 262 ALL-SFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSASLLIQY 315 (317)
T ss_pred HHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 877 499999999999999887556666667778899999999999999998854
No 6
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=100.00 E-value=6.8e-45 Score=336.62 Aligned_cols=238 Identities=16% Similarity=0.169 Sum_probs=208.8
Q ss_pred ccCccccceeeeeeeehhccc----------c-----CCcceeeeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777 10 IYSKVCPRATFLLFCPSVLYS----------K-----ESHWLVISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASV 69 (277)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~ 69 (277)
..|+.+|.+.++.+.+.+..+ | |++......|.+++ +|+++..+..++++++ +|++ ++
T Consensus 21 ~~~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~--l~ 98 (284)
T TIGR00751 21 WLHAFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLV--LA 98 (284)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 446889999888888876554 2 22211122344443 7899999999999886 8887 55
Q ss_pred hhchH------HHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHH
Q 023777 70 EAGNL------RAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASL 143 (277)
Q Consensus 70 ~~~~~------~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~sl 143 (277)
+.++| +++.+|++|++++|+||+||+|+||+|+||++++++||++++.|+||+|+++ ++++.++.|+
T Consensus 99 ~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~-------~~~~~ll~sl 171 (284)
T TIGR00751 99 LLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHR-------VDWVGILPAV 171 (284)
T ss_pred HhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCC-------CCHHHHHHHH
Confidence 67787 7889999999999999999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHH
Q 023777 144 LVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKL 223 (277)
Q Consensus 144 p~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~ 223 (277)
|.+++++++|++||+||+ |+|+++||||+|||+|+|+|+++|.++...+|++.+..+..+..|+++++ +++++|++.+
T Consensus 172 ~~g~l~~~il~~Nn~~D~-~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~~~ll-~ll~lPl~~~ 249 (284)
T TIGR00751 172 ATGLLACAVLNINNLRDI-PTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISWWCVL-FLLAAPLLLK 249 (284)
T ss_pred HHHHHHHHHHHHcCcccc-hhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999998888888889999877 4999999999
Q ss_pred HHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHH
Q 023777 224 VVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAG 259 (277)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~ig 259 (277)
+.|.++++ ++++++.+..+.|++.++++++++++|
T Consensus 250 ~~~~~~~~-~~~~~l~~~l~~t~~~~~l~~~l~~ig 284 (284)
T TIGR00751 250 AAGPVRSG-RGPRELRPVLRDTGLAMLLWNLLFALG 284 (284)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999885 567788889999999999999998865
No 7
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=9.9e-38 Score=290.09 Aligned_cols=238 Identities=18% Similarity=0.246 Sum_probs=202.5
Q ss_pred cCccccceeeeeeeehhccc---------------cCCcceee-eeeccC----CHHHHHHHHHHHHHHHH-HHHHHHHH
Q 023777 11 YSKVCPRATFLLFCPSVLYS---------------KESHWLVI-SFVLLG----SRTGTLVTAYLLLVLGF-IGLTWASV 69 (277)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~-~~n~ig----~~~~v~~~~~~~l~~~~-~Gl~~~l~ 69 (277)
+|+++|...++++.+.+..+ .|++.... ..+.+. +++++...+..++++++ +|++ +.
T Consensus 34 ~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~--l~ 111 (296)
T PRK05951 34 FRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWS--LV 111 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 48899999988888775543 22220000 123332 27899999999888885 6666 55
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023777 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT 149 (277)
Q Consensus 70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~ 149 (277)
..+++..+.+|++|+++++.||+||+|+||+|+||+.++++||++++.|++|+|++. +++..+..|+|.++++
T Consensus 112 ~~~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~-------~~~~~~~~sl~~~l~~ 184 (296)
T PRK05951 112 LDRGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGN-------LSSPNLLAGVPLGLLM 184 (296)
T ss_pred HhccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999998 8899999999999999
Q ss_pred HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 023777 150 SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVE 229 (277)
Q Consensus 150 ~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~ 229 (277)
++++++||+||+ |+||++||||+|+++|+|++ ++|..+...+|+.++..+..|..|++.++ .++++|++.+..+...
T Consensus 185 ~~il~~n~~~D~-e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~-~ll~lp~~~~~~~~~~ 261 (296)
T PRK05951 185 ALVLLSNNLRDI-EDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLW-ALLSLLVAYALCLWQL 261 (296)
T ss_pred HHHHHHCCCccc-hhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999 88999999999999999999999998876 4999999999988887
Q ss_pred hhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 230 ENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 230 ~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
++. ++++ . . .+.|.+.++++++++|++++..
T Consensus 262 ~~~-~~~~-~-~--~~~~~~~~~g~l~~~~~~l~~~ 292 (296)
T PRK05951 262 RKF-PPDP-D-E--ATVQLFMLFGYLYILATLLSAL 292 (296)
T ss_pred hhC-cccc-c-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 653 3332 2 2 4999999999999999998764
No 8
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=100.00 E-value=1.2e-35 Score=274.62 Aligned_cols=206 Identities=20% Similarity=0.278 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+|++...+..++++++ +|++ +....+++.+.+|++|++++++||.||+|++|+|+||+.+++++|++++.+++|+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~g~~--l~~~~~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~ 163 (293)
T PRK06080 86 PKQVKRAAIAFFGLAALLGLY--LVAVSGWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQA 163 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999988886 7776 556679999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
++ +++.+++.++|.++++.+++++||+||+ |+|+++||||+|+++|+|++++++..+..++|+..+..++.|
T Consensus 164 ~~-------~~~~~~~~~l~~~l~~~~~~~~n~~~D~-~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 164 GT-------VDSAVFLPALPCGLLIGAVLLANNIRDI-ETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 8899999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
.+|++.++ +++++|++.+.++++.+++ ++++..+..+.+++.+..+++++++|++++
T Consensus 236 ~~~~~~ll-~ll~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (293)
T PRK06080 236 LASPWGLL-FLLSLPLAVKAARPVLRKQ-KPETLIPALKATGKTNLLFGLLFAIGLLLS 292 (293)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876 4999999999999998763 455556666779999999999999998864
No 9
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=1.4e-28 Score=227.66 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH--HHHhhhhHHHHHHHHH
Q 023777 46 RTGTLVTAYLLLVLGF--IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP--LCFAAFGPFATTAFYL 121 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~--~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl--~v~l~~G~l~v~g~yy 121 (277)
++++.+.+..+..++. .|++ +...++|+.+.+|.+++++++.||+||.|+||+|+||. .++.++|+ .+.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~l~--l~~~~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~-~v~G~~~ 153 (282)
T PRK13105 77 DRAMHRTTLWASVVTTVPFLVV--LLAVGSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP-ALYGLVL 153 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH-HHHHHHH
Confidence 6778777666666664 3444 55666899999999999999999999999999999999 77888887 8888888
Q ss_pred HhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH
Q 023777 122 LLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG 201 (277)
Q Consensus 122 vq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v 201 (277)
+ ++. +++..++.+.++++++.++...||+||+ |+||++||||+|+++|+|+|.+++..+..+++++.+.
T Consensus 154 ~-~~~-------~~~~~~l~~~~~~~~~~a~~ii~~irDi-e~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~-- 222 (282)
T PRK13105 154 A-GAP-------FTAALWAVLAAFFLWGMASHAFGAVQDV-VADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA-- 222 (282)
T ss_pred h-hcc-------ccHHHHHHHHHHHHHHHHHHHHHhCcch-HhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH--
Confidence 8 555 6788889999999999999999999999 9999999999999999999999999999999877663
Q ss_pred HhhhhhHHHHHHHHhHHHHHHHHHHHHH-hhccCchhhhhhHHHHHHHHHHHHHHHHHHH
Q 023777 202 LSRALPLSCIFLCAMTSPIGKLVVSYVE-ENHKDKGKIFMAKYYCVRFHALFGAALVAGL 260 (277)
Q Consensus 202 ~~g~lP~~~ll~~lltlPla~~~~~~~~-~~~~~~~~~~~~~~~t~k~~~l~~lll~igl 260 (277)
.+. |. .++ .++++|++.+..|.+. ++ +++++..+..+.+++.+.++++++++..
T Consensus 223 -~~~-~~-~~l-~ll~~p~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~l~~~~~ 277 (282)
T PRK13105 223 -LPW-PG-WLA-AVLALPYVVNTARFWSVTD-ADCERANRGWRRFLWLNYVSGFLVTMLL 277 (282)
T ss_pred -HHh-HH-HHH-HHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 232 22 334 4899999999999887 55 5667788888899999999999998843
No 10
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.96 E-value=4.6e-28 Score=223.42 Aligned_cols=201 Identities=18% Similarity=0.248 Sum_probs=161.3
Q ss_pred eeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhh
Q 023777 39 SFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFG 112 (277)
Q Consensus 39 ~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G 112 (277)
..|.+.+ +|+++..+..+..+++ +|+. .++|....++.+|++.+++||.||+|+||+| +||+.+++++|
T Consensus 71 ~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~-----l~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~ 145 (283)
T TIGR01476 71 PQRPIPSGIISLREVRWNWLVLTVAGLLVALV-----LGNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYE 145 (283)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHH
Confidence 3455544 7889999888888885 4433 2456657889999999999999999999998 89999999998
Q ss_pred HHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHH
Q 023777 113 PFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI 192 (277)
Q Consensus 113 ~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ 192 (277)
..+...++.++ +. +++..++.+++.++.+.++++.||+||+ |+|+++||||+|+++|+|++++++..+...
T Consensus 146 ~~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~~~~i~~~nd~~D~-~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~ 216 (283)
T TIGR01476 146 GLPWMAGHAIF-AP-------LTWQSVVVALIYSLGAHGIMTLNDFKSV-EGDRQLGLRSLPVMIGVKRAAIVAVTTINV 216 (283)
T ss_pred HHHHHHHHHHh-CC-------CCHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHcCCcCcceEEcHHHHHHHHHHHHHH
Confidence 88777777665 33 6888889999999999999999999999 999999999999999999999999998888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHH
Q 023777 193 LYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 256 (277)
Q Consensus 193 ~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll 256 (277)
+|+..+........|+++.+..++..|...++.|.++++ +++..+....|++.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~l~~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 277 (283)
T TIGR01476 217 FQAMVIGLLLIWGQPWVATIVFLLLVAQIYNQIKLFLRD---PQQNYVRYNATANPFYVLGMLA 277 (283)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhC---hHHhhHHhhhhcHHHHHHHHHH
Confidence 887766544444467754333478889988888888764 2223344456999999999775
No 11
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.96 E-value=6.7e-28 Score=225.27 Aligned_cols=199 Identities=20% Similarity=0.212 Sum_probs=158.3
Q ss_pred eeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhh---chHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhh
Q 023777 40 FVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEA---GNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAA 110 (277)
Q Consensus 40 ~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~---~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~ 110 (277)
+|.+.+ ++++...+..++++++ +|+. +... .++..+.+|++|++++++||+||+|+||+| +||+.++..
T Consensus 88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~--l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~ 165 (306)
T TIGR02056 88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFI--LDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGAS 165 (306)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHHHHHHHHH--HHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHH
Confidence 455544 6889999998888886 6665 3322 357889999999999999999999999998 899999888
Q ss_pred hhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777 111 FGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV 190 (277)
Q Consensus 111 ~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~ 190 (277)
+|..++.+++ .++++ +++..++.+++.++++.++++.||+||+ |+|+++||||+|+++|+|++++++..+.
T Consensus 166 ~~~~~~~~~~-a~~g~-------~~~~~~l~~~~~~l~~~~i~~~n~~~D~-e~D~~~G~~Tlpv~lG~~~a~~~~~~l~ 236 (306)
T TIGR02056 166 YIALPWWAGH-ALFGE-------LNPDIAVLTLIYSIAGLGIAIVNDFKSV-EGDRALGLQSLPVAFGIETAAWICVGAI 236 (306)
T ss_pred HHHHHHHHHH-HHhCC-------CcHHHHHHHHHHHHHHHHHHHHHHccCh-HHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence 8877776654 55676 7889999999999999999999999999 9999999999999999999999999888
Q ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHH
Q 023777 191 MILYSLLFAIGLS-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFG 253 (277)
Q Consensus 191 ~~~y~~l~~~v~~-g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~ 253 (277)
..++.+.+..... +..|++.++ .++++|.+.+..|+++++ +++..+....+++.....|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~ll-~ll~~p~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 296 (306)
T TIGR02056 237 DIFQGLIAAYLLAIGENLYAAAL-VALIIPQITFQDKYFLKD---PLKNDVKYQASAQPFLVLG 296 (306)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHhC---hHhhCcchhhhhhHHHHHH
Confidence 8888765554443 455655555 489999999999988763 2333334334666555444
No 12
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.93 E-value=3.9e-24 Score=200.53 Aligned_cols=207 Identities=19% Similarity=0.202 Sum_probs=151.9
Q ss_pred eeeccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhH
Q 023777 39 SFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGP 113 (277)
Q Consensus 39 ~~n~ig~----~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~ 113 (277)
..|.+.+ ++++...+..++++|+. +. ...++....++++++++++.||+||+++||++ +||+.+++++|.
T Consensus 98 ~~Rpl~sG~is~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~ 172 (314)
T PRK07566 98 PYRPIPSGAISLRWVLYLIAVLTVLGLA-VA----YLLGPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEG 172 (314)
T ss_pred CCCCCCCceeCHHHHHHHHHHHHHHHHH-HH----HHHChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHH
Confidence 3455543 68888888888777752 11 22378888899999999999999999999999 799999999987
Q ss_pred HHHHHH-HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHH
Q 023777 114 FATTAF-YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMI 192 (277)
Q Consensus 114 l~v~g~-yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ 192 (277)
++..++ ++.+++. .++..++.+++.++.+.+++..||+||+ |+|+++|+||+|+++|++++++++..+...
T Consensus 173 ~~~~~g~~~~~~~~-------~~~~~~l~~~~~~l~~~~~~~~~d~~D~-e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~ 244 (314)
T PRK07566 173 LPWWAGAAAFGAGL-------PSWPIVILALLYSLGAHGIMTLNDFKSV-EGDRQLGLRSLPVVFGEKNAARIACVVIDL 244 (314)
T ss_pred HHHHHHHHHhccCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHh-HhHHHcCCcccceeEcHHHHHHHHHHHHHH
Confidence 765444 4444444 7889999999999999999999999999 999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 193 LYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 193 ~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
+|++++........+++..+..++..|.+....+..++. ++++ .....+.+++.+++.+ ..+++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~ll-~~~~~~~ 310 (314)
T PRK07566 245 FQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRLLRDP-LERD---VWYNASAQPFYVLGML-VTALAIR 310 (314)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCh-hhcC---hhhhhhhhHHHHHHHH-HHHHHhc
Confidence 888765443332234433222367888887776663321 2222 2333366666666544 4455443
No 13
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.91 E-value=8.5e-23 Score=195.71 Aligned_cols=198 Identities=20% Similarity=0.202 Sum_probs=149.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHH-HhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHH
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWAS-VEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLL 122 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l-~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyv 122 (277)
++++...+..++++++ +|+.+.. ....++..+.++++|++++++||+||+++||+|+ |++..+..+|.++..+++ .
T Consensus 167 ~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~-a 245 (375)
T PLN00012 167 ENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQ-A 245 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHH-H
Confidence 5778887777766664 4444211 1125788889999999999999999999999997 899888888877766554 6
Q ss_pred hcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777 123 LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 202 (277)
Q Consensus 123 q~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~ 202 (277)
.++. +++..++.+++.+++..++++.||++|+ |+|+++|++|+||++|++++++++..+..+..+.++....
T Consensus 246 ~~g~-------~s~~~illal~~~l~~lai~ivnd~~Di-e~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~ 317 (375)
T PLN00012 246 LFGT-------LTPDVVVLTLLYSIAGLGIAIVNDFKSI-EGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLL 317 (375)
T ss_pred HcCC-------CCHHHHHHHHHHHHHHHHHHHHhhhcch-hhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6676 7889999999999999999999999999 9999999999999999999999887655555544443333
Q ss_pred h-hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHH
Q 023777 203 S-RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAAL 256 (277)
Q Consensus 203 ~-g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll 256 (277)
. +..++..++ .++.+|......+.+.+ ++.+..+....+++.+++++.+.
T Consensus 318 ~~~~~~y~~~~-~~l~l~~l~~~~~~~~~---~p~~~~~~~~~~a~~~~~~~~l~ 368 (375)
T PLN00012 318 AIGKPYYALAL-LGLIIPQIFFQFKYFLP---DPVKNDVKYQASAQPFLVFGLLV 368 (375)
T ss_pred HHhHHHHHHHH-HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 223333334 47888988888887765 34444444555888888888663
No 14
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=6.3e-23 Score=188.69 Aligned_cols=196 Identities=19% Similarity=0.165 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcc-ccccc-chHHHHHhhhhHHHHHHHHHHh
Q 023777 47 TGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFR-LSYQG-LGEPLCFAAFGPFATTAFYLLL 123 (277)
Q Consensus 47 ~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~-l~y~g-lGEl~v~l~~G~l~v~g~yyvq 123 (277)
+.....+..+..+++ +|+.+ +...+||..+.+++++.++++.||.||.| +|+.| +||+.++..+|..++.++++.+
T Consensus 77 ~~~~~~~~~l~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~ 155 (285)
T PRK12872 77 TKAYGLFLLLNVLGLYLGAYL-LAVIGGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY 155 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence 455555555555554 55542 23457899999999999999999999874 78876 8999999999999999999998
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHh
Q 023777 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLS 203 (277)
Q Consensus 124 ~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~ 203 (277)
++. +++..++.++..++.+......||+||+ |+|+++|++|+|+++|+|++++.+..+..++++..+.....
T Consensus 156 ~~~-------~~~~~~~~~~~~fl~~~~~~~~~d~~D~-e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~ 227 (285)
T PRK12872 156 QLT-------IFSLLLLYAVFIFLKSFIREIVFDIKDI-EGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYT 227 (285)
T ss_pred ccc-------cchHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 775 6778888899999999999999999999 99999999999999999999999999999999999888888
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHH
Q 023777 204 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGA 254 (277)
Q Consensus 204 g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~l 254 (277)
|..|++.+.+ ++..|......+++.++ +++++.. ......|.+++.|+
T Consensus 228 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~g~ 275 (285)
T PRK12872 228 GLLPLLLLVL-LLLLAYVLYYIIKLFAA-DDKKDLL-YLSLLDKEHMLLGL 275 (285)
T ss_pred hHhhHHHHHH-HHHHHHHHHHHHHHHhc-ccccchh-HHHHHhHHHHHHHH
Confidence 8889987665 66777777766777665 4444333 22234455555444
No 15
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=99.89 E-value=9e-22 Score=184.32 Aligned_cols=164 Identities=20% Similarity=0.233 Sum_probs=126.7
Q ss_pred eeeccCC----HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHH-HHhhhhH
Q 023777 39 SFVLLGS----RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPL-CFAAFGP 113 (277)
Q Consensus 39 ~~n~ig~----~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~-v~l~~G~ 113 (277)
.++.+.+ +++.+..+..+.++|+ . +....|+..+.+++++.++++.||.||+|+||+|++|.. ++...|.
T Consensus 86 p~rPiasG~ls~~~a~~~~~~~~~lal---~--la~~~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~ 160 (308)
T PRK12887 86 PHLPLAAGEFSRRQGQRIVIITGILAL---I--LAALLGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGV 160 (308)
T ss_pred CCCCcCCcccCHHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHH
Confidence 4455544 5777776666655553 2 234578899999999999999999999999999999854 4556666
Q ss_pred HHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHH
Q 023777 114 FATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 193 (277)
Q Consensus 114 l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~ 193 (277)
....|.++....... ....++..+++.+++..+.+.++.+.||+||+ |+||++|+||+|+++|++++.+++..+..++
T Consensus 161 i~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~-egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 161 IVNLGLFLHFQWLLG-GSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDM-EGDRQYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHHh-ccccCcHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 666666553211000 00126678889999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHH
Q 023777 194 YSLLFAIGLSRALPLS 209 (277)
Q Consensus 194 y~~l~~~v~~g~lP~~ 209 (277)
|+..+.....+..++.
T Consensus 239 y~~~i~~~~~~~~~~~ 254 (308)
T PRK12887 239 YLGMIAVGLLSLPTVN 254 (308)
T ss_pred HHHHHHHHHHHhhhHH
Confidence 9988877666655544
No 16
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.87 E-value=6.5e-21 Score=177.80 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=111.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHheeeccC----Cccc---ccccchHHHHHhhhhHHHHHHHHHHhcCccccccccc
Q 023777 62 IGLTWASVEAGNLRAIMLLTCAVICGYIYQCP----PFRL---SYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSI 134 (277)
Q Consensus 62 ~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~g----P~~l---~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~ 134 (277)
+|++ +.+..||.+ +++++.+++++||.| |.|+ ++.|+||+++++++|..++.+....+ +
T Consensus 111 lGl~--La~~~g~~l--l~ll~~l~g~lYS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~-~--------- 176 (307)
T PRK13591 111 LGTY--ILAMDGMLL--LAFLPFITGYLYSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYC-G--------- 176 (307)
T ss_pred HHHH--HHHHHhHHH--HHHHHHHHHHHhcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhh-h---------
Confidence 5555 456777754 678999999999998 9888 77789999999999997765422211 1
Q ss_pred hHHHHHHHHHHHHHH----HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023777 135 TATVLSASLLVGLTT----SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSC 210 (277)
Q Consensus 135 ~~~~ll~slp~gll~----~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ 210 (277)
+ +..+++.++.. ......||+||+ |+|+++||+|+|+++|+++|++++..+..++|++++..+..|.+|+..
T Consensus 177 ~---~~~~~~i~l~~~~~l~~~~iindirDi-EGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~ 252 (307)
T PRK13591 177 S---LIPVGLIFLFFGVKLFINSCVYDFKDV-KGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEP 252 (307)
T ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhhhh-HhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 1 12333444444 333378999999 999999999999999999999999999999999999999999999765
Q ss_pred HHHHHhHHHHHHHHHHHHHh
Q 023777 211 IFLCAMTSPIGKLVVSYVEE 230 (277)
Q Consensus 211 ll~~lltlPla~~~~~~~~~ 230 (277)
... +-+++.-.--.+...+
T Consensus 253 ~~~-~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 253 IIL-LYSFVCGLICIQVYSS 271 (307)
T ss_pred hhh-HHHHHHHHHHHHHHcC
Confidence 443 4455554444444443
No 17
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.86 E-value=3e-20 Score=175.60 Aligned_cols=142 Identities=20% Similarity=0.282 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHH
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAF 119 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~----~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~ 119 (277)
+|+++..+..+..+|+ +|++ +... +++.++..++++++++++||.||+++||+++ ||+.+++.+|..++.+.
T Consensus 94 ~~~al~~~~~l~~la~~lg~~--L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~ 171 (331)
T PRK12392 94 EKEALWNSIIVLLLAIGLGVW--LGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSA 171 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHH
Confidence 7889998888888886 6665 4333 2566777888999999999999999999985 99999999997665544
Q ss_pred HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHH
Q 023777 120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 198 (277)
Q Consensus 120 yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~ 198 (277)
+.+.++ +++..++.+++.++++.+.+..||++|+ |+|++.|+||+|+++|++++.++-.....++.++.+
T Consensus 172 -~a~~g~-------~~~~~~~l~~~~~l~~~~~~~i~d~~D~-egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~ 241 (331)
T PRK12392 172 -NALFSD-------IRPEVVWLAGLNFFMAIALIIMNDFKSV-EGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFA 241 (331)
T ss_pred -HHHhcC-------CCHHHHHHHHHHHHHHHHHHHHHcccch-hhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHH
Confidence 455555 6788888999999999999999999999 999999999999999999998776555545554443
No 18
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.85 E-value=6.7e-22 Score=176.49 Aligned_cols=212 Identities=17% Similarity=0.254 Sum_probs=169.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHH
Q 023777 44 GSRTGTLVTAYLLLVLGFIGLTWASVEA----GNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAF 119 (277)
Q Consensus 44 g~~~~v~~~~~~~l~~~~~Gl~~~l~~~----~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~ 119 (277)
-.|..|.+.+..+..+|+.+.....+.. ....++.+|.++ .++.||+| +.+||..+||+...+.|||+.++.+
T Consensus 143 l~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls--~sflytgg-igfkyialgdliili~fgpiavlfa 219 (359)
T KOG4581|consen 143 LEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLS--GSFLYTGG-IGFKYIALGDLIILILFGPIAVLFA 219 (359)
T ss_pred cChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcc--cceeEecc-cceEEEeccCEEEEEeechHHHHHH
Confidence 3356777888888888863333211111 123566777554 79999998 6999999999999999999999999
Q ss_pred HHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHH
Q 023777 120 YLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFA 199 (277)
Q Consensus 120 yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~ 199 (277)
|-.|+|+ +.|..+..++|..+-+-+|+++||.||. |+||++|..|+++.+|+..+..+|..+..++|.+..+
T Consensus 220 f~~q~g~-------l~~~~l~yaiplalnteailhsnntrd~-dndr~agivtlailig~t~s~ily~~llf~py~lf~i 291 (359)
T KOG4581|consen 220 FAIQTGH-------LAIFPLGYAIPLALNTEAILHSNNTRDA-DNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFI 291 (359)
T ss_pred HHHhcCc-------eeEEeehheeeeccchHHHhccCCCccc-ccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 8888899999999999999999999999 9999999999999999999999999999999987665
Q ss_pred HHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 023777 200 IGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILVTKHIPK 273 (277)
Q Consensus 200 ~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~~~~~~~~ 273 (277)
+.. .-..|.. ++++++|.+.+.-|++++. +.-...|. +|+|.++.+|+++..+..++.-+-+-..||
T Consensus 292 ~~~--~~si~~~-lplltip~afqiek~frne--qa~~~lp~--qtakln~~~gi~yv~~~~~ahqlpa~~l~k 358 (359)
T KOG4581|consen 292 FAL--HCSISFA-LPLLTIPMAFQIEKQFRNE--QAFHKLPQ--QTAKLNFFFGIFYVFACCCAHQLPAFGLPK 358 (359)
T ss_pred HHH--HHHHHHH-hHHhhchhHHhHHHHhhhH--hhhhhcch--hhhhHHHHHHHHHHHHHHHhccCCcCCCCC
Confidence 543 2233333 4799999999999999764 23233444 499999999999999999887666655555
No 19
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.84 E-value=4.7e-19 Score=164.17 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=87.2
Q ss_pred HHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCC
Q 023777 81 TCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQ 160 (277)
Q Consensus 81 ~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D 160 (277)
+..++.++.||+||+|+||+|++|..++..+ .+++.++|++|+++ +++..+..+ .++++.++...||+||
T Consensus 120 l~~i~~~~~YS~pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~~tg~-------~~~~~l~~a--~~l~~~~~~~in~i~D 189 (282)
T PRK12875 120 LAFLVLSVEYSAPPLRFKTTPVLDSLSNGLY-ILPGVAAYALVSGS-------LPPLLAVAG--GWLWAMGMHTFSAIPD 189 (282)
T ss_pred HHHHHHHHHHcCCCccchhccHHHHHHHHHH-HHHHHHHHHHHcCC-------CcHHHHHHH--HHHHHHHHHHHHhccC
Confidence 3367899999999999999999998763222 47778999999987 665555444 4799999999999999
Q ss_pred CChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHH
Q 023777 161 VVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLF 198 (277)
Q Consensus 161 ~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~ 198 (277)
+ |+|+++||||+|+++|+|+++++...+..++-....
T Consensus 190 i-e~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 190 I-EPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred H-HHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence 9 999999999999999999999877766655554433
No 20
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.80 E-value=6.9e-18 Score=156.07 Aligned_cols=194 Identities=12% Similarity=0.097 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..++++|+ . +....++..+.+++++.++++.||.. -.++++||+..++.+|. .+.++++++++
T Consensus 91 ~~~a~~~~~~l~~~~~---~--l~~~~~~~~~~~~~~~~~~~~~Y~~~---Kr~~~~~~~~~g~~~~~-~~l~~~~a~~g 161 (285)
T PRK12847 91 VKQALILLFILLLIAL---V--ILLLLNKTTIYLSFIAVILIVLYPLM---KRFFYWPQLFLGFTFNM-GILMAFAAVQN 161 (285)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHhcccc---ccCCcccHHHHHHHHHH-HHHHHHHHHcC
Confidence 5777777776666663 2 22345888899999999999999853 23567899999999885 56777888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 205 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~ 205 (277)
+ +++..++.+++..+++.+....|+++|+ |+|+++|++|+|+++|++++.+.+.......+++.......|.
T Consensus 162 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~ 233 (285)
T PRK12847 162 Q-------LDIEAILLYIGCIFWTIGYDTIYAYQDK-KDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSL 233 (285)
T ss_pred C-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 7889999999999999999999999999 9999999999999999999999998888888887777777777
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
.|++.+.. .+..-......+.. +. +++++ ++ ..-|.....+.++.++++++
T Consensus 234 ~~~~y~~~-~~~~~~l~~~~~~~-~~-~~~~~---~~-~~f~~~~~~~~l~~~~~~~~ 284 (285)
T PRK12847 234 HNIFYLAI-LAAAGIFYYQYKLL-DF-DNPAN---CM-YAFKANHYVGLLLFLGAVLG 284 (285)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHh-CC-CCHHH---HH-HHHHHhHHHHHHHHHHHHhC
Confidence 67665332 22222222222222 21 22322 22 13455566677666666653
No 21
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.79 E-value=2.2e-17 Score=151.78 Aligned_cols=189 Identities=18% Similarity=0.117 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+++....+..+.++++. +. ...++..+.+++++++.++.||. ++||+++ ||+.+++.+|...+.+.++++.
T Consensus 81 ~~~a~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~ 152 (279)
T PRK12884 81 RREALLLAILLFILGLI-AA----YLISPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFIFGGIAVGE 152 (279)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 57787777777776642 11 12377888888899999999985 6889985 9999999999777777666543
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
. +...++.+....+.+......||++|+ |+|+++|+||+|+++|+|++.+.+.......++........|
T Consensus 153 ~---------~~~~~~l~~~~~~~~~~~~~~~~~~D~-e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 153 L---------NEAVILLAAMAFLMTLGREIMKDIEDV-EGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred C---------chHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 236677778888888888999999999 999999999999999999999999888888887666656666
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVA 258 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~i 258 (277)
..+++.++..+++.+.......++.++ +++++ .+ ..+.....+.++++
T Consensus 223 ~~~~~y~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~--~~~~~~~~~~~~~~ 270 (279)
T PRK12884 223 IFNILYLAPVLVADLIFLYSAYSLLRS-QDRET---IR--KVRKITLTAMLLAL 270 (279)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhcC-CCHHH---HH--HHHHHHHHHHHHHH
Confidence 656554433345555555444334343 23322 22 33555555554443
No 22
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.78 E-value=9.4e-18 Score=150.07 Aligned_cols=123 Identities=25% Similarity=0.412 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhcC
Q 023777 47 TGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 47 ~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~g 125 (277)
+++...+..+.++++ . +.+..++..+.+.+++.+.++.|| +|+++||+++ +|+.+++.+|.....+.+. +++
T Consensus 70 ~~~~~~~~~~~~l~l---~--l~~~~~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 142 (257)
T PF01040_consen 70 RQALIFALILLLLGL---L--LALLLGPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYA-AGG 142 (257)
T ss_pred HHHHHHHHHHHHHHH---H--HHHhcCchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhh-cCC
Confidence 344445545544442 2 225677888888888999999999 8999999999 9999999999877777655 555
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHH
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSV 184 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ 184 (277)
. .+...++.+.+.++...++...||+||+ |+|+++|++|+|+++|++++.+
T Consensus 143 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~-~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 143 D-------PPPPPFLLAIFFFLLIFAIMFFNDIRDI-EGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred c-------ccHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHcCCcchHHHHHHHHHHH
Confidence 4 5778899999999999999999999999 9999999999999999999998
No 23
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.73 E-value=4.5e-16 Score=143.69 Aligned_cols=196 Identities=17% Similarity=0.129 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~-glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.+.+. . +....++....++..+.++.+.|+. +||+ ++|++..++.+|. ++.+++++++
T Consensus 82 ~~~a~~~~~~~~~~~~---~--~~~~l~~~~~~l~~~~~~~~~~Y~~----~Kr~~~~~~~~~g~~~~~-~~~~g~~a~~ 151 (282)
T TIGR01475 82 KKEARTMIILSLALFL---S--ASYFLNPLAFILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGL-APLAGWVAVI 151 (282)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHhh----HhccccccHHHHHHHHHH-HHHHHHHHHh
Confidence 5777777665543332 1 2233466666777778888899973 5655 6899999999885 5566677777
Q ss_pred Cccccccccch--HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777 125 STRENLCLSIT--ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 202 (277)
Q Consensus 125 g~~~~~~~~~~--~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~ 202 (277)
++ .+ +..++.+++..+++.+..+.||++|+ |+|+++|++|+|+++|+|++.+.+.....+++........
T Consensus 152 g~-------~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~-e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 223 (282)
T TIGR01475 152 GT-------ISFFLVAWLLGIGVGFWIAGFDLIYAIQDY-EFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF 223 (282)
T ss_pred CC-------ccchHHHHHHHHHHHHHHHHHHHHHHHhhH-HhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 55 77788899999999999999999999 9999999999999999999999988877777766544443
Q ss_pred hhh-hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 203 SRA-LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 203 ~g~-lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
.+. .++..... .+..+......+..+ . +++++ +++.--..+...++++.+|++++.+
T Consensus 224 ~~~~g~~y~~~~-~~~~~~l~~~~~~~~-~-~~~~~---~~~~ff~~~~~l~~~~~~g~~~~~~ 281 (282)
T TIGR01475 224 YVGNGYIALLAL-ILIGLILAYEHYIVD-P-GDQSK---IQRAFFYANGFLSITFLIGVIIDVL 281 (282)
T ss_pred HhhCcHHHHHHH-HHHHHHHHHHHHHcC-C-CCHHH---HHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 332 22222222 233344444444332 2 22221 2222234445566777777776553
No 24
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.73 E-value=8.5e-16 Score=141.43 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++|+ . +....|+..+.++..+.+.++.||.. +|+++ +||+.++..+|..++.|.+.+
T Consensus 81 ~~~a~~~~~~l~~~g~---~--l~~~~~~~~~~~~~~~~~~~~~Y~~~---~k~~~~lg~~~vg~~~g~~~~~g~~a~-- 150 (277)
T PRK12883 81 RKAALYYSLLLFAVGL---A--LAYLINIEAFLFALGAYVLMFLYAWK---LKPLPFIGNVVVALLTGATPIYGAIAV-- 150 (277)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCcchhhHHHHHHHHHHHHHHHHHh--
Confidence 6777777777766553 2 22346888888888999999999974 45555 699999999998887776543
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV 190 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~ 190 (277)
++ +++..+.... ..+...+..+.||++|+ |+|+++|++|+|+++|++++++......
T Consensus 151 ~~-------~~~~~~~~~~-~fl~~~~~~~~~~~~D~-e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 151 GR-------IGLAGYLAIC-AFLVNVAREIMKDIEDI-EGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred cc-------ccHHHHHHHH-HHHHHHHHHHHhhhhhh-ccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 44 5555444333 55666788899999999 9999999999999999999998776543
No 25
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.72 E-value=9.8e-16 Score=143.02 Aligned_cols=198 Identities=15% Similarity=0.034 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+|++...+..+.++|+ +++. +...+++..+.+|+.+.++++.|+.+|.. .+.|.+++.-++.++..++.| ++++
T Consensus 96 ~~~a~~~~i~l~~i~~~l~~~--l~~~~~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~~~l~G~~~~~~~~~~g--~~~~ 170 (297)
T PRK12871 96 SKNAFALFILLAAVTSALILT--LPYPNSLYVFVIMLYSYGIEAFYQVKKRN-QKYPVAQLLGRTDFTLFPAAG--YLCY 170 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHHHHHHHH--HHHh
Confidence 7889998888888885 4444 44556778889999999999999988854 666777755445555533333 5567
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
++ +++..++.+++.++++.+...+||++|+ |+|+++|+||+|+++|++++++....+..+..+..+.. ..+
T Consensus 171 g~-------~~~~~~ll~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~~~-~~~ 241 (297)
T PRK12871 171 GQ-------PDMTALLYMVFFYPWTMAHLGLNDFIDL-ENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFF-LRE 241 (297)
T ss_pred CC-------CcHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 76 7788888999999999999999999999 99999999999999999999987776665555443322 223
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
..+.......+...|+.....+..+. +++++-+ ..-+.+..+.+.+...+++.
T Consensus 242 ~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~f~~~~~~~~~~~~~~~~~ 294 (297)
T PRK12871 242 LGPIALYGFLAGFVLLAGANLYLWKE--KSQDAGM----KILPLYHASLVIYAVSIILD 294 (297)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHH----HHHHHHHHHHHHHHHHHHhh
Confidence 33221111114455666666655543 3344333 15566777777777666653
No 26
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.71 E-value=2.2e-15 Score=139.21 Aligned_cols=132 Identities=16% Similarity=0.091 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHH-HHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLR-AIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~-il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq 123 (277)
++++...+..++++|+ ++.. ..++. ....+....+.++.||. ++||+++++..++...|.+++.++++++
T Consensus 82 ~~~a~~~~~~~~~~~~~l~~~-----~l~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~ 153 (279)
T PRK12869 82 RKEALAVGSALSALGTALGFL-----LLGPLTALFIALGWFFYAVVYTI---WLKPRTWLNIVIGGFAGNAAALAGYASG 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhCc---ccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888877775 3222 12333 23334445567889994 7999999999999999999999999999
Q ss_pred cCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHH
Q 023777 124 GSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMIL 193 (277)
Q Consensus 124 ~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~ 193 (277)
+++ +++..++.+++.++++.+..++|+++|+ |+|+++|+||+|++.|+|++.+.......+.
T Consensus 154 ~g~-------~~~~~~ll~~~~~~w~~~~~~~l~~~d~-edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~ 215 (279)
T PRK12869 154 TGS-------LDLEAVLLSFLIYLWTPGHIWSLALKYR-EDYRRAGVPMLPAVVGEKTSVRAISISNALM 215 (279)
T ss_pred hCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhH-HhHHHcCCeecceeecHHHHHHHHHHHHHHH
Confidence 998 8899999999999999999999999999 9999999999999999999998776655443
No 27
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.70 E-value=2.2e-15 Score=139.81 Aligned_cols=197 Identities=16% Similarity=0.106 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..++++++ . +....++....++.++++..+.|+ ..-.+++++++..+++++. .++++++++++
T Consensus 85 ~~~a~~~~~~~~~~~l---~--l~~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~t~~~~~~lg~~~~~-~~l~g~~a~~g 155 (284)
T PRK12888 85 VRTAWTGALVALAVFL---G--AAALLNPLCLALAPLAVAPLVVYP---YAKRFTNFPHAILGLAQAV-GPVGAWIAVTG 155 (284)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHH---HhhcccchhhHHHHHHHHH-HHHHHHHHHcC
Confidence 5677666655544432 2 223446666667777777778885 2335567899999988764 45677899988
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh-
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR- 204 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g- 204 (277)
+ +++..++.+++.++++......|+++|+ |+|+++|+||+|+++|+|++.+.+..+....++.........
T Consensus 156 ~-------~~~~~~ll~~~~~~w~~~~~~i~a~~D~-e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~ 227 (284)
T PRK12888 156 T-------WSWPAVLLGLAVGLWIGGFDLIYACQDA-EVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVG 227 (284)
T ss_pred C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7 7889999999999999999999999999 999999999999999999999877777666665544443333
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
..+++. +....+......-.+.. + .+++++... .--+.+...|+++.+|++++.+
T Consensus 228 ~~~~y~-~~~~~~~~~l~~~~~~~-~-~~~~~~~~~---~ff~~n~~ig~~~~~~~~~~~~ 282 (284)
T PRK12888 228 FGALWW-IGLAITAGAFAYEHAIV-S-PTDLSRVNR---AFFTANGFVGIALFGFALLDLL 282 (284)
T ss_pred CcHHHH-HHHHHHHHHHHHHHHHc-C-ccCHHHHHH---HHHHHhhHHHHHHHHHHHHHHH
Confidence 222222 22123333333322222 2 234443331 1223445567878888877664
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.69 E-value=2.6e-15 Score=138.48 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++|+. +. ...++....+++++.+..+.||. ++||++ +||+.++..+|..++.|.+++++
T Consensus 81 ~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~ 152 (279)
T PRK09573 81 LKEAKIFSITLFIVGLI-LS----IFINIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIFGGLAVFN 152 (279)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHHHHHHcc
Confidence 68888888888777752 21 22467788888999989999985 578777 59999999999998888877764
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
.. ..+...+...+.+.+....||++|+ |+|+++|++|+|+++|+|++.+..........+........+
T Consensus 153 ~~----------~~~~l~~~~f~~~~~~~~~~~~~D~-~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
T PRK09573 153 VL----------RIIILFLCAFFSTWSREIVKDIEDI-EGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLG 221 (279)
T ss_pred ch----------HHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2233444555667788889999999 999999999999999999999988766555555443333334
Q ss_pred hhhH-HHHHHHHhHHHHHHHHHHHHH
Q 023777 205 ALPL-SCIFLCAMTSPIGKLVVSYVE 229 (277)
Q Consensus 205 ~lP~-~~ll~~lltlPla~~~~~~~~ 229 (277)
...+ +......+..+......+..+
T Consensus 222 ~~~~~y~~~~~~~~~~~l~~~~~~~~ 247 (279)
T PRK09573 222 IFGIYYLIVVIICDILFIIAMLILLK 247 (279)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 2222 222222344555555555554
No 29
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.69 E-value=7.8e-15 Score=135.33 Aligned_cols=130 Identities=14% Similarity=0.017 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~-~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+|++...+..++++|+.- +....++....++.+++++ ++.||. ++||+++++..++...|.++++++|++++
T Consensus 81 ~~~a~~~~~~~~~~g~~i----l~~~~~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~ 153 (280)
T TIGR01473 81 PREALAFGLLLGVLGVAI----LAAFVNPLAALLGLFGIFFYVIVYTI---WLKRRTPQNTVIGGFAGAVPPLIGWAAVT 153 (280)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhcCh---hhccCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 688888888887777431 2233567777788888866 899995 58999999999988999999999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAV 190 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~ 190 (277)
++ +++..++.+++..+....-......+|+ |+|+++|+||+|+++|+|++.+......
T Consensus 154 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~~~-~dd~~~G~~tl~v~~G~~~a~~~~~~~~ 211 (280)
T TIGR01473 154 GS-------ISLGAWLLFAIIFLWQPPHFWALALKYK-DDYRAAGIPMLPVVKGERITKRQIALYT 211 (280)
T ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHCCCccCCcccCHHHHHHHHHHHH
Confidence 88 7888888888888887776666678999 9999999999999999999887554433
No 30
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.67 E-value=7e-15 Score=135.99 Aligned_cols=194 Identities=18% Similarity=0.123 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..++++++. +. ...++....++.++.+..+.|+ +..+++++|++..++.+|+.. ..+++++++
T Consensus 88 ~~~a~~~~~~l~~~~~~-l~----~~l~~~~~~l~~~~~~~~~~Y~---~~Kr~~~~~~~~~g~~~g~~~-~~g~~a~~~ 158 (282)
T PRK12848 88 EKEALALFVVLVLVAFL-LV----LTLNTLTIWLSVAALALAWIYP---FMKRYTHLPQVVLGAAFGWGI-PMAFAAVQG 158 (282)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHH---hHHhcCcccHHHHHHHHHHHH-HHHHHHHhC
Confidence 68888888888777742 22 2346777788888888999994 456677899999899988654 557888888
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 205 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~ 205 (277)
+ +++..++.+++..+.+....+.|+++|+ |+|+++|++|+|+++|+|++.+..........+........+.
T Consensus 159 ~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (282)
T PRK12848 159 S-------VPLEAWLLFLANILWTVAYDTQYAMVDR-DDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGL 230 (282)
T ss_pred C-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-hhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 7888899999999999999999999999 9999999999999999999887654333333333333333344
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023777 206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITA 263 (277)
Q Consensus 206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~ 263 (277)
.+++.... ...........+.. +. +++++-. . .-+.+...+.++.+|++++
T Consensus 231 ~~~y~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~-~---~F~~n~~~g~~l~~~~~~~ 281 (282)
T PRK12848 231 GWAYYWGL-LVAAALFVYQQKLI-RD-REREACF-K---AFLNNNWVGLVLFAGIAAS 281 (282)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHc-CC-CCHHHHH-H---HHHhCcHHHHHHHHHHHHh
Confidence 44443221 22222222222222 11 2333211 1 2244555777777776653
No 31
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.66 E-value=2e-14 Score=132.97 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..+.++|+ . +....|+....++.+++++++.||. .-++++++++..++.++..++.| ++++++
T Consensus 86 ~~~a~~~~~~~~~~~~---~--l~~~l~~~~~~l~~~~~~~~~~Y~~---~Kr~~~~~~~~~g~~~~~~~~~g-~~a~~g 156 (281)
T TIGR01474 86 VRQAILFLLVQLLVAL---G--VLLQLNPLTILLGVASLALVATYPF---MKRITYWPQLVLGLAFGWGALMG-WAAVTG 156 (281)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHhhHHHHHHHHHHHHHHHHhch---hcccccccHHHHHHHHHHHHHHH-HHHHcC
Confidence 5777766666655554 2 2234678888899999999999984 22346789999998888666555 778888
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 205 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~ 205 (277)
+ +++..++..+...+++......|+++|+ |+|+++|+||+|+++|+++++...........+........+.
T Consensus 157 ~-------~~~~~~ll~~~~~lw~~~~~~~~a~~D~-e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (281)
T TIGR01474 157 D-------LSTAAWVLYLANILWTLGYDTIYAMQDK-EDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGL 228 (281)
T ss_pred C-------CcHHHHHHHHHHHHHHHHHHHHHHHhhH-HhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7 7788777888889999999999999999 9999999999999999998766544444333333333333344
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264 (277)
Q Consensus 206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~ 264 (277)
.+++.+........+ ......+ +. +++++ ++ ..-|....++.++.++++++.
T Consensus 229 ~~~y~~~~~~~~~~~-~~~~~~~-~~-~~~~~---~~-~~F~~~~~~~~~l~~~~~~~~ 280 (281)
T TIGR01474 229 GPVYYLGLAAAALLL-IRQIATL-DI-RDPEN---CL-KLFKANNYVGLLLFAGIALGW 280 (281)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHh-CC-CCHHH---HH-HHHHHhhHHHHHHHHHHHHHh
Confidence 444432221222222 2222233 22 22322 21 244555666666666666543
No 32
>PLN02878 homogentisate phytyltransferase
Probab=99.64 E-value=2.7e-14 Score=131.81 Aligned_cols=151 Identities=19% Similarity=0.253 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeecc--CCcccccccchHHHHHhhhhHHHHHHHHHHh
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQC--PPFRLSYQGLGEPLCFAAFGPFATTAFYLLL 123 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~--gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq 123 (277)
+++....+..++++|+ .+. . ..+.++++.....+.++++.||. ||+|+|+.|+--..++++-+...+-.++|..
T Consensus 67 ~~~a~~~~~~~~~lg~-~la--~-~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h 142 (280)
T PLN02878 67 VATGVAIVTSFAIMSF-GMG--W-IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLH 142 (280)
T ss_pred HHHHHHHHHHHHHHHH-HHH--H-HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHh
Confidence 5777666666666664 111 1 22334566666677789999997 9999999998666666555555543344432
Q ss_pred cCccc-cccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH
Q 023777 124 GSTRE-NLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG 201 (277)
Q Consensus 124 ~g~~~-~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v 201 (277)
..+.. .....++...+...+-..+...++.+.||+||+ |+||+.|++|+|+++|++++.++...+..++|...+...
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Di-eGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g 220 (280)
T PLN02878 143 MQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDV-EGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVG 220 (280)
T ss_pred HHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhCcCc-hhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100 001113445555555777888899999999999 999999999999999999999999999999998544433
No 33
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=3.4e-14 Score=130.71 Aligned_cols=134 Identities=16% Similarity=0.096 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++|+. +. ...++....++.++.+.++.||. ++|+++ +||+.++...|.....|..+...
T Consensus 82 ~~~a~~~~~~l~~~g~~-~~----~~l~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~~~~~~ 153 (276)
T PRK12882 82 PRGALAFSILLFAAGVA-LA----FLLPPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGGAAVGT 153 (276)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 68888888888777752 11 23467778888889889999985 789886 69999988888776666555432
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSL 196 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~ 196 (277)
. .....+..+++..+.+.+....||++|+ |+|+++|++|+|+++|+|++.++.........+.
T Consensus 154 ~--------~~~~~~~l~~~~fl~~~~~~~~~~~~D~-e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~ 216 (276)
T PRK12882 154 E--------GLLALLVLFALAALATLAREIIKDVEDI-EGDRAEGARTLPILIGVRKALYVAAAFLLVAVAA 216 (276)
T ss_pred c--------chHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHH
Confidence 2 2344566677778888899999999999 9999999999999999999998776655444433
No 34
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.63 E-value=4.5e-14 Score=132.76 Aligned_cols=193 Identities=15% Similarity=0.040 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccc-ccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSY-QGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y-~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++| +.+ ....|+..+.+++++++.++.||. .|| ++++....++.++...+.| |++++
T Consensus 118 ~~~a~~~~~~~~~~g---~~l--~~~~~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~Gl~~~~~~l~g-~~a~~ 187 (314)
T PRK12878 118 RKQAKVFMVLQALVG---LAV--LLQFNWFAIALGIASLAIVAAYPF----MKRITWWPQFFLGLAFSWGALMG-WAAHF 187 (314)
T ss_pred HHHHHHHHHHHHHHH---HHH--HHHHhHHHHHHHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHH-HHHHh
Confidence 466765555554444 332 234588889999999999999974 443 3555555566655444444 89999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
|+ +++..++..+...++....-..+|++|+ |+|+++|++|+|+++|++++++.+........++.......+
T Consensus 188 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (314)
T PRK12878 188 GS-------LSLAAVLLYAGSIAWTIGYDTIYAHQDK-EDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAG 259 (314)
T ss_pred CC-------CchHHHHHHHHHHHHHHHHHHHHHhhhH-hhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88 7888787777888888888888999999 999999999999999999999988665555544444444444
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhh-ccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEEN-HKDKGKIFMAKYYCVRFHALFGAALVAGLITAR 264 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~-~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~ 264 (277)
.+++.++. ++..+.. ...+ ..+. .+++++ + +..-+.+..++.++.++++++.
T Consensus 260 -~~~~~~~~-~~~~~~~-l~~~-~~~~~~~~~~~---~-~~~F~~n~~~~~ll~~~l~~~~ 312 (314)
T PRK12878 260 -VPLLALLG-LLAAAAH-LAWQ-IARLDIDDPDQ---C-LRLFKSNRDAGLLIFLGLVVGG 312 (314)
T ss_pred -CcHHHHHH-HHHHHHH-HHHH-HHHcccCChHH---H-HHHHHHhHHHHHHHHHHHHHHh
Confidence 35554443 4555543 2222 3221 122221 2 1244566677777777777654
No 35
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.63 E-value=7.8e-14 Score=129.85 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=99.3
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHH
Q 023777 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTT 149 (277)
Q Consensus 70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~ 149 (277)
...|+....++.++.+....||. .-+++++|++..+++++ .++++++++++++ +++..++.+++.++++
T Consensus 107 ~~~~~~~~~l~~~~~~~~~~Y~~---~Kr~t~~~~~~~g~~~~-~~~l~g~~a~~g~-------~~~~~~ll~~~~~lw~ 175 (291)
T PRK12886 107 WFLNPLCLYLSPPALFFLLLYSY---CKRFTALAHVVLGFCLA-LAPLGAWIAIRGT-------IELPAILLGLAVLFWV 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhccccccHHHHHHHHH-HHHHHHHHHHcCC-------CcHHHHHHHHHHHHHH
Confidence 45677777777777777888984 23446789999888866 4567889999887 7888899999999999
Q ss_pred HHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 150 SLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 150 ~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
...-+.++++|+ |+|+++|++|+|+++|++++++.......+.+.........+
T Consensus 176 ~~~~~~~a~~D~-e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (291)
T PRK12886 176 AGFDILYALQDL-EFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISA 229 (291)
T ss_pred HHHHHHHHhccH-HhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 998888999999 999999999999999999999988777666766555544444
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.62 E-value=3.9e-14 Score=131.75 Aligned_cols=198 Identities=14% Similarity=-0.016 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..++++++. + ...-++....++..+.+..+.||. .-++++++++..++.+|. .+.++++++++
T Consensus 92 ~~~a~~~~~~~~~~~~~-l----~~~l~~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~-~~l~g~~a~~g 162 (290)
T PRK12870 92 VKVGIVIAIVALLCAAG-L----AFFLNPLSFWLCVAAVPVIFLYPL---AKRVFPVPQLVLAIAWGF-AVLISWSAVTG 162 (290)
T ss_pred HHHHHHHHHHHHHHHHH-H----HHHHhHHHHHHHHHHHHHHHHhhh---hhhccccceeeehHHHHh-HHHHHHHHHcC
Confidence 57777777766666641 1 122356666778888888999974 455667889988889884 67888898988
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhhh
Q 023777 126 TRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRA 205 (277)
Q Consensus 126 ~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~ 205 (277)
+ +++..++.+++..+++...-..|+++|+ |+|+++|.+|+|+++|++++.++.........++.......|.
T Consensus 163 ~-------~~~~~~~l~~~~~lw~~~~d~~~a~~D~-e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (290)
T PRK12870 163 H-------LDLGTWLLWAATVFWTLGFDTVYAMSDR-EDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLEL 234 (290)
T ss_pred C-------CCHHHHHHHHHHHHHHHHHHHHHHhhhH-hhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7 7888888999999999999999999999 9999999999999999999887655333333333333334454
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 206 LPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 206 lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
.|++... ..+..-........++++ ++++.. + +..-+.+...+.++.++++++.+
T Consensus 235 ~~~y~~~-~~~~~~~l~~~~~~~~~~--~~~~~~-~-~~~F~~n~~~g~~~~~~~~~~~~ 289 (290)
T PRK12870 235 HLPFWIG-LAIAAVLWARQYRRLRQA--NLPPLA-Y-GQLFLQNVWIGFLLLAGMILGSL 289 (290)
T ss_pred cHHHHHH-HHHHHHHHHHHHHHhccc--CCChHH-H-HHHHHHhhHHHHHHHHHHHHHhh
Confidence 4554321 122222223333333322 122211 1 12446666778888888777654
No 37
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.62 E-value=6.4e-14 Score=130.32 Aligned_cols=188 Identities=14% Similarity=0.025 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+++.+.....+.+.++ +|++ +....++....+..++.++++.||.||+|+|+||+.|-.+-..+|.-... ..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~--la~~l~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~--~~~~~ 166 (292)
T PRK13595 91 PGEVRPLLRAVLLLNAPFLLY--LALLLPPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLAL--PALAL 166 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHH--HHHHc
Confidence 5777776666666664 4555 55667788888888899999999999999999999987666666653332 23344
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
|+ +..+..+ +...+...+.-..-.+.|+ |+||+.|.||+|+++|+|++.++-..+..++-+....
T Consensus 167 g~------~~~~~~l---~a~~~w~~g~dii~ai~Di-egDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~----- 231 (292)
T PRK13595 167 GA------PVPWPPL---LALMAWSVGKHAFDAAQDI-PADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWP----- 231 (292)
T ss_pred CC------cchHHHH---HHHHHHHHHHHHHHhccCh-HhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHH-----
Confidence 43 1233333 2334556788888899999 9999999999999999999998766655554433222
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV 257 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~ 257 (277)
.++...+ .+.+|-.....+ +.+. +++++..+.-+.-.-...+.|.+.+
T Consensus 232 -~~~~~~~--~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~ 279 (292)
T PRK13595 232 -VSRLTAL--ALWLICGGMALA-LWRR-PTPETAHRLYPLSIVTPWIVGTVAG 279 (292)
T ss_pred -hcchHHH--HHHHHHHHHHHH-HhcC-CCHHHHhccchHHHHHhHHHHHHHH
Confidence 2332211 244454454444 4333 4455544444444445555554433
No 38
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.59 E-value=2.7e-13 Score=126.32 Aligned_cols=196 Identities=12% Similarity=-0.008 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccc-cccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLS-YQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~-y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++++... ...++....+++.++.....||. .| ++++|++..++.+|..++.|...+ +
T Consensus 93 ~~~a~~~~~~~~~~~~~~~-----~~~n~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~~g~~~~~~~l~G~~av-~ 162 (291)
T PRK12874 93 VKSMVLFIVLNALIFIGVS-----YFINPLAFKLSFPFLIVLGGYSY----FKRFSSLAHLVLGLSLGLAPIAGVVAV-L 162 (291)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHhh----hcccccccHHHHHHHHHHHHHHHHHHH-c
Confidence 6777777777765543222 22344444444555556777874 33 457899999999887766665454 6
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
|+ +++..++.+++..+++......|+++|+ |+|+++|++|+|+++|++++.+........+.+.........
T Consensus 163 g~-------~~~~~~~l~~~~~~w~~~~~~~~a~~D~-~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (291)
T PRK12874 163 GE-------IPLWSVFLALGVMFWVAGFDLLYSLQDM-EFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCA 234 (291)
T ss_pred CC-------CcHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66 6777788899999999999999999999 999999999999999999998876555544443333222211
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 205 ALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARI 265 (277)
Q Consensus 205 ~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~ 265 (277)
...++..+...+..-......+..+ + +++ + . . +..-......++++.++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~-~-~-~-~~ff~sn~~l~~l~~~~~~~~~~ 289 (291)
T PRK12874 235 HLGLFAYLGVIVSALILLYEHYLVR-K-DFK-K-I-D-KAFFTLNGYLGIVFFIFIVLDVL 289 (291)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhc-C-CCh-H-H-H-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222222221233333333333332 2 222 2 1 1 11234445566777777766654
No 39
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.58 E-value=5.1e-13 Score=124.47 Aligned_cols=129 Identities=16% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++|+.... ...++....++.++++ ..+.||. ++||++.|+..++...|..+++.++++++
T Consensus 90 ~~~a~~~~~~l~~~g~~l~~----~l~~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~~~~~v~~~~g~~~~l~g~~a~~ 162 (296)
T PRK04375 90 PREALIFGLVLGVLGFLLLG----LFVNPLAAWLTLAGIFFYVVVYTL---WLKRRTPQNIVIGGAAGAMPPLIGWAAVT 162 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHhcc---chhcCCccchHHHHHHHHhHHHHHHHHhC
Confidence 68888888777777752211 1123322233333332 3557874 79999999999888888888888999998
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWA 189 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l 189 (277)
++ +++..++.+++..+....-.++++++|+ |+|+++|.+|+|+++|++++++.....
T Consensus 163 g~-------~~~~~~~l~~~~~lw~~~~~~~~~~~d~-~D~~~~G~~tlpv~~G~~~~~~~~~~~ 219 (296)
T PRK04375 163 GS-------LSWEALILFLIIFLWTPPHFWALAIFRK-DDYAAAGIPMLPVVKGIRVTKRQILLY 219 (296)
T ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHcCCCccceeeCHHHHHHHHHHH
Confidence 87 7888889999999999999999999999 999999999999999999988755443
No 40
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.34 E-value=1.5e-10 Score=108.37 Aligned_cols=202 Identities=15% Similarity=0.041 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
++++...+..+++.+. . +....++....++..+.+..+.|+. .-+++++|++..++.+|..++.|. +..+|
T Consensus 95 ~~~A~~~~~~~~~~~~---~--~~~~ln~~~~~l~~~~~~~~~~Y~~---~KR~t~~~~~~lg~~~~~~~~~G~-~a~~g 165 (300)
T PRK13106 95 ISEAKALITAGLILFF---A--SAYLVNRWALLLSPIVALIAMSYPY---MKRYTAFANYHLASIQGLAVFSGA-VAVLG 165 (300)
T ss_pred HHHHHHHHHHHHHHHH---H--HHHHHhHHHHHHHHHHHHHHHHHhH---HhcCCcchHHHHHHHHHHHHHHHH-HHHcC
Confidence 4666555433333222 1 1123355445555556666777863 234457899999999997655554 55555
Q ss_pred ccccc-cccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH-h
Q 023777 126 TRENL-CLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL-S 203 (277)
Q Consensus 126 ~~~~~-~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~-~ 203 (277)
..... ...++...++..+-..+++...-..|+++|+ |+|++.|.||+|+++| |++.+....+..++-.+...... .
T Consensus 166 ~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~-e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~ 243 (300)
T PRK13106 166 LYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDA-EFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYY 243 (300)
T ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccch-hhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 41100 0001122222222333444444466999999 9999999999999999 88888777666666555444333 2
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023777 204 RALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARILV 267 (277)
Q Consensus 204 g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~~ 267 (277)
+.-+++.... ..+.-....-.+...+ + ++.. . .-+.+...|+++.+|++++.+..
T Consensus 244 ~lg~~y~~~~-~~~~~~l~~~~~~~~~---~-~~~~-~---~F~~n~~ig~~~~~~~~~~~~~~ 298 (300)
T PRK13106 244 GLGPIAIAAT-ILHGLIMAYAYYLASK---K-GDFG-R---AFYYNIYSSIVLGLGIIIDVLLG 298 (300)
T ss_pred CCcHHHHHHH-HHHHHHHHHHHHHhCC---c-hHHH-H---HHHHccHHHHHHHHHHHHHHHHc
Confidence 2333332111 1111222222222221 1 2222 1 22555667888888888877654
No 41
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.26 E-value=1.9e-09 Score=101.26 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+..+|...+. ...++....++.++.+ ..+.|| .++||++..+..++-..|.+++++++++++
T Consensus 93 ~~~A~~~~~~l~~~g~~ll~----~~~n~~~~~l~~~~~~~~~~~Yt---~~lKr~t~~~~~vgg~~ga~p~l~G~~a~~ 165 (306)
T PRK13362 93 LGEALGFGLALGVAGFGLLA----AFTNPLAALFAAFGYVVYVGVYS---LYLKRNSVYGTLVGSLSGAMPPVVGYCAVT 165 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHh---HHHhccCcHhHHHHHHHHHHHHHHHHHHHc
Confidence 68888888877777752111 1224443334444443 366888 379999998877776777888999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
|+ +++..++......++...--.+-.+.|+ |+|+++|.+|+|++.|++++++.
T Consensus 166 g~-------~~~~~~~l~~~~~~W~~~h~~~~ai~~~-~Dy~~aG~~~lpv~~G~~~t~~~ 218 (306)
T PRK13362 166 GQ-------FDAGALILLLMFSLWQMPHSYAIAIFRF-NDYAAAGIPVLPVARGIAKTKLH 218 (306)
T ss_pred CC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhH-hhHHHCCCeeeceecChHHHHHH
Confidence 88 7888888888888888887777889998 99999999999999999988863
No 42
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.25 E-value=1.3e-09 Score=101.03 Aligned_cols=144 Identities=24% Similarity=0.172 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
+|+.......++++++. +.+.-++....+...+.++++.| | .+||.+ ++....+..+|.....|. .+..
T Consensus 93 ~~~a~~~~~~~~~~~~~-----~a~~l~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~~g~-~a~~ 162 (289)
T COG0382 93 VKEALLLAILLLLLGLA-----LALLLNPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGALAGA-AAVG 162 (289)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHHHHH-HHHh
Confidence 46777777777666642 22334555577888888899999 4 677765 688888999986666554 4444
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
++ .+...++..+-..+.+.+.-..++++|+ |.||++|.+|+|+.+|++++..+-.......-+...+....+
T Consensus 163 ~~-------~~~~~~~l~~~~~l~~~~~~~i~~~~D~-e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~ 234 (289)
T COG0382 163 GS-------LPLLAWLLLLAAILWTLGYDIIYAIQDI-EGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAG 234 (289)
T ss_pred Cc-------cchHHHHHHHHHHHHHHHHHHHHhccCc-cchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44 5677788888899999999999999999 999999999999999999999887776633333334444444
Q ss_pred hhh
Q 023777 205 ALP 207 (277)
Q Consensus 205 ~lP 207 (277)
..+
T Consensus 235 ~~~ 237 (289)
T COG0382 235 LLG 237 (289)
T ss_pred hch
Confidence 443
No 43
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.19 E-value=3.5e-09 Score=98.68 Aligned_cols=195 Identities=14% Similarity=0.014 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccc-cchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQ-GLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~-glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++++ ++. ..-+.....++.++.+..+.||. .||+ +++++..++.++..+ ..++.+++
T Consensus 91 ~~~A~~~~~~~~~~~~-~~~----~~l~~~~~~l~~~~~~~~~~Y~~----~KR~t~~~~~~lg~~~~~~~-l~g~~av~ 160 (289)
T PLN02809 91 PFQGVGFLGAQLLLGL-GIL----LQLNNYSRILGASSLLLVFTYPL----MKRFTFWPQAFLGLTFNWGA-LLGWAAVK 160 (289)
T ss_pred HHHHHHHHHHHHHHHH-HHH----HHHhHHHHHHHHHHHHHHHHHhH----HHhcCcchHHHHHHHHHHHH-HHHHHHHh
Confidence 5677666666555553 222 22355677788888888999973 5555 589988888877554 44466667
Q ss_pred CccccccccchHHHHH-HHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHH-H
Q 023777 125 STRENLCLSITATVLS-ASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIG-L 202 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll-~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v-~ 202 (277)
++ .++...+ ......+++..--..-.+.|+ |+|+++|.+|+|+++|++.+.++. .+..+++..+.... .
T Consensus 161 g~-------~~~~~~~~l~~~~~~W~~~~d~~ya~~D~-e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~ 231 (289)
T PLN02809 161 GS-------LDPAVVLPLYASGVCWTLVYDTIYAHQDK-EDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYN 231 (289)
T ss_pred CC-------CChHHHHHHHHHHHHHHHHHHHHHHHhch-hhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 76 4544432 333333334222233334699 999999999999999999655544 45555555543332 2
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 203 SRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 266 (277)
Q Consensus 203 ~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~ 266 (277)
.+..+++.... ....-......+.+ +. +++++ +.+ .-+.+...|.++.+|++++...
T Consensus 232 ~~~~~~~~~~~-~~~~~~l~~~~~~v-~~-~~~~~---~~~-~F~~n~~~g~~~~~~~~~~~~~ 288 (289)
T PLN02809 232 AGLGWPYYAGL-AAAAGHLAWQIQTV-DL-SSRAD---CNR-KFVSNKWFGAIVFAGIVLGKLF 288 (289)
T ss_pred hcCcHHHHHHH-HHHHHHHHHHHHHc-CC-CCHHH---HHH-HHHhCCHHHHHHHHHHHHHHhh
Confidence 33333322111 11111112112222 11 23332 221 2344445778878888776654
No 44
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.15 E-value=6.1e-09 Score=97.02 Aligned_cols=197 Identities=11% Similarity=0.023 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCccccccc-chHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQG-LGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++......++++++. +....++.-+.++..+......|. ..||.. ++.+..++.+| ..+++++.+.+
T Consensus 83 ~~~A~~~~~~~~~~~~~-----~~~~ln~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g-~~~l~g~~Av~ 152 (286)
T PRK12895 83 MREAIAFTIIFIAIFEI-----CTFLLNRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIG-LGVLAGYLAVI 152 (286)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHH-hHHHHHHHHHc
Confidence 57777777666665532 223445655566666665655553 467765 78888899999 56677777777
Q ss_pred Cccccccccch--HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHH
Q 023777 125 STRENLCLSIT--ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGL 202 (277)
Q Consensus 125 g~~~~~~~~~~--~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~ 202 (277)
++ ++ +..++..+...+++..-=....+.|+ |+|++.|.||+|+++|++++.++-..+..++.........
T Consensus 153 g~-------~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~-e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~ 224 (286)
T PRK12895 153 PA-------FPYNLLIYIIFISSSLWIAGFDIIYVIPDI-EYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI 224 (286)
T ss_pred CC-------CCchHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 76 44 33456677788888888899999999 9999999999999999999986654544444433333322
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 203 SRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 266 (277)
Q Consensus 203 ~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~ 266 (277)
....+++. +..+...-....-.+.++. +++++.... .-+.+...|.++.+|.+++..+
T Consensus 225 ~~~~~~y~-~~~~~~~~~l~~q~~~~~~--~~~~~~~~~---~F~~N~~ig~~~~~~~~~~~~~ 282 (286)
T PRK12895 225 YIRTLWYL-AALIIIYTLVIYQHLIIDP--RNPINKRMS---FFNANSFIGFVFLIGIILSLRF 282 (286)
T ss_pred HHhhHHHH-HHHHHHHHHHHHHHHHhcC--CCHHHHHHH---HHHHcCHHHHHHHHHHHHHhcc
Confidence 22223322 1111111212222222221 233332211 3344455677777887776654
No 45
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.04 E-value=5.3e-08 Score=91.33 Aligned_cols=133 Identities=13% Similarity=0.009 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccc-hHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGL-GEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~gl-GEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+++.+ +. +....|+.-..++.++++..+.|| ..||+.. +.+..++.++. .+.++++..+
T Consensus 93 ~~~A~~~~~~~~~~~---~~--l~~~ln~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLGl~~~~-~~l~~~~Av~ 162 (300)
T PRK12876 93 INFSMLLLTLCSFLF---LS--LCWLLNPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILGLVYYL-AILMNFFAII 162 (300)
T ss_pred HHHHHHHHHHHHHHH---HH--HHHHHhHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHHHHHHH-HHHHHHHHHh
Confidence 466666554333322 22 234557777788888888889996 3888865 77777777765 4455555554
Q ss_pred CccccccccchH----HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHH
Q 023777 125 STRENLCLSITA----TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 195 (277)
Q Consensus 125 g~~~~~~~~~~~----~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~ 195 (277)
++ +.++ ..++.+++..+.++.-=....+.|+ |.|++.|.||+|+++|++++.+.-..+..+..+
T Consensus 163 ~~------~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~-e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~ 230 (300)
T PRK12876 163 ET------PLSFSLFCMASLWGISFGMIIAANDIIYAIQDL-EFDRKEGLFSIPARFGEKKAIRIASANLIASAI 230 (300)
T ss_pred cC------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-hhHHHcCCccchHHHCchhHHHHHHHHHHHHHH
Confidence 43 1344 2334444555555555555569999 999999999999999999986665544444443
No 46
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.67 E-value=3.5e-06 Score=78.98 Aligned_cols=136 Identities=15% Similarity=0.088 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcC
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGS 125 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g 125 (277)
+++....+..+..+++..+. .+....++.-..++.++++....||. =.|+++ +..+..++.++ ..+++++-+.+|
T Consensus 90 ~~~A~~~~~~~~~~~~~~~~-~l~~~~n~l~~~l~~~~~~~~~~Y~~-~KR~t~--~~~~vlg~~~a-~~~l~gw~Av~g 164 (294)
T PRK12873 90 LKTAYSLLIVLLLLSLFVVL-SLPQPSRNLCLSLAFLALPPILIYPS-AKRWFA--YPQAILALCWG-FAVLIPWAAAEG 164 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHHHHHHHHHH-HHhccc--cchHHHHHHHH-hHHHHHHHHHhC
Confidence 56777666666666542221 01111366667777777778888984 224433 44666666655 455566667777
Q ss_pred ccccccccchHH--HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHH
Q 023777 126 TRENLCLSITAT--VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYS 195 (277)
Q Consensus 126 ~~~~~~~~~~~~--~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~ 195 (277)
+ +++. .+...+...+++..-=..-.+.|+ |+|+++|.+++|++.|++ +...-..+..+..+
T Consensus 165 ~-------~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~-edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ 227 (294)
T PRK12873 165 S-------LNGGWPLLFCWLATLLWTFGFDTVYAMADR-RDDAKIGLNSSALSLGSN-ALKTVQICYFLTSI 227 (294)
T ss_pred C-------CchhHHHHHHHHHHHHHHHHHHHHHHHHhH-hhHHHcCCcccchhcChh-hHHHHHHHHHHHHH
Confidence 6 5543 233334555555554445566699 999999999999999974 44444444444443
No 47
>PLN02776 prenyltransferase
Probab=98.60 E-value=1.6e-05 Score=75.87 Aligned_cols=131 Identities=9% Similarity=0.016 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-heeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVIC-GYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~-~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
++++...+..+.++|+.. +....++.-..++..+++. ...|| ++||+......++...|-+++++++.+.+
T Consensus 75 ~~~A~~~~~~l~~~g~~~----l~~~~n~l~~~l~~~~~~ly~~vYt----~lKR~t~~~~~lG~~~Ga~ppL~Gw~Avt 146 (341)
T PLN02776 75 VPHAVAWAVVVGAAGVAL----LAYKTNMLTAGLGAGNILLYAFVYT----PLKQIHPANTWVGAVVGAIPPLMGWAAAS 146 (341)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHH----hHccCCchhHHHHHHHHHHHHHHHHHHHc
Confidence 567777776666655421 2234577666777776665 56888 38998887788899999888899999998
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceee--chhcHHHHHHHHHHH
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRL--GTERGSVVVKWAVMI 192 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~l--G~~~a~~ly~~l~~~ 192 (277)
++ +++..++..+...++...=-+.=-+.|. |+|+++|.+.+|+.- |++.++.........
T Consensus 147 g~-------~~~~~~~Lf~~~~~Wq~pHf~~la~~~~-dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l 208 (341)
T PLN02776 147 GQ-------LDAGAMVLAAALYFWQMPHFMALAYMCR-DDYAAGGYRMLSLADATGRRTALVALRNCLYL 208 (341)
T ss_pred CC-------CCHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhCCCcccCccccchHHHHHHHHHHHHHH
Confidence 87 7888777777777666632223335677 899999999999865 577777665444333
No 48
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.17 E-value=0.00015 Score=68.04 Aligned_cols=137 Identities=7% Similarity=0.027 Sum_probs=78.8
Q ss_pred eeeeccCC----HHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHheee-----ccCCcccccccc-hHHH
Q 023777 38 ISFVLLGS----RTGTLVTAYLLLVLGF-IGLTWASVEAGNLRAIMLLTCAVICGYIY-----QCPPFRLSYQGL-GEPL 106 (277)
Q Consensus 38 ~~~n~ig~----~~~v~~~~~~~l~~~~-~Gl~~~l~~~~~~~il~lg~~gil~~~~Y-----S~gP~~l~y~gl-GEl~ 106 (277)
+..+.+.| +|..+..+..+.++++ ++.. . ...+...++.+.| +. ++|+.|+ |-+.
T Consensus 78 ~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l----------~-~i~i~~~~i~~lY~~lm~a~---~~K~~~l~gNl~ 143 (299)
T PRK13592 78 FPHRALPSGRVKKKDLAIALSFIVAVSVLLNVL----------F-MNNVGWFLFLYIYGTLMSFW---FFKRDKIQNSLP 143 (299)
T ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH----------H-HHHHHHHHHHHHHHHHHHHH---HHcccCCCcchh
Confidence 34455554 5677777766655553 2221 1 2233344456666 65 7888875 7777
Q ss_pred HHhhhhHHHHHH-HHHH-----hcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechh
Q 023777 107 CFAAFGPFATTA-FYLL-----LGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTE 180 (277)
Q Consensus 107 v~l~~G~l~v~g-~yyv-----q~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~ 180 (277)
+...-|.....+ ..|. ...... ......+..++-..+...+--...+++| |+|++ |.+|+|+.+|+|
T Consensus 144 Va~ltg~~f~~g~~~~~~~fg~~~~g~~----~~~~~~~~l~l~afl~~l~rEI~KdieD--~gd~~-~~~Tlpi~~G~k 216 (299)
T PRK13592 144 LALVTHNPVMMILNLYTISFVCYKYNLP----LLSLPTVLLAFTMYFPSLIWEVCRKIRA--PKDET-EYVTYSKLFGYK 216 (299)
T ss_pred hhhhccchhhhchhhhhhhhhhhhcccc----hhhHHHHHHHHHHHHHHHHHHHHHhhcC--Ccccc-CCeeechhccch
Confidence 766656333212 1111 111100 0111123455566677777788888999 56664 588999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 023777 181 RGSVVVKWAVMILYS 195 (277)
Q Consensus 181 ~a~~ly~~l~~~~y~ 195 (277)
+|.++-..+..++.+
T Consensus 217 kA~~ia~~l~ii~v~ 231 (299)
T PRK13592 217 KATRFIEVVTLLDIL 231 (299)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999887776655554
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.019 Score=54.08 Aligned_cols=170 Identities=14% Similarity=0.030 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH-HheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVI-CGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil-~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~ 124 (277)
|++.+..+..+-.+|..- +....|+..-.+++.+++ =.+.||. -+|||-.-.+..+-+-|-.+++.+|.+.+
T Consensus 98 p~~al~fgl~L~~~g~~~----l~~~vn~laa~l~~~gi~~Yv~vYT~---~lKR~T~~NiviGg~aGa~PpliGwaAvt 170 (304)
T COG0109 98 PREALAFGLVLGVAGFSL----LWFLVNLLAAVLGLFGIFFYVVVYTL---WLKRRTPQNIVIGGFAGAMPPLIGWAAVT 170 (304)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhh---hccCCcccceeeeeccccccccceeeeee
Confidence 678887777776666422 224566654444444443 3567886 68999777776666668889999999999
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHHHHhh
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAIGLSR 204 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g 204 (277)
|+ +++..++....+.++.--=-++=-++-. |+=+++|.--+|+.-|++.+++-...-..+...........|
T Consensus 171 g~-------~~~~a~~Lf~IiF~WtPpHfwALAl~~~-~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g 242 (304)
T COG0109 171 GS-------ISLGAILLFAIIFLWTPPHFWALALKYK-DDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLG 242 (304)
T ss_pred CC-------CCchHHHHHHHHHHhccHHHHHHHHHHH-HHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 7777765555555443221111122223 556889999999999999988755432222222222222344
Q ss_pred hh-hHHHHHHHHhHHHHHHHHHHHHHh
Q 023777 205 AL-PLSCIFLCAMTSPIGKLVVSYVEE 230 (277)
Q Consensus 205 ~l-P~~~ll~~lltlPla~~~~~~~~~ 230 (277)
.. +.+..++.++.........+..++
T Consensus 243 ~~g~~Y~v~a~~l~~~~l~~a~~~~~~ 269 (304)
T COG0109 243 YVGYLYLVVATLLGAWFLALAWKLYRK 269 (304)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 344444456666666666666654
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=96.46 E-value=0.31 Score=45.82 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchHH-HHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEP-LCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl-~v~l~~G~l~v~g~yyvq~ 124 (277)
+++....+..++++|+ ++. ...++....+....++..+.||. ++|++++-+. .+...++.-...|+....
T Consensus 92 ~~~A~~~~~~l~~~~l-~la----~~l~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~lr~~~G~~a~~- 162 (295)
T PRK12324 92 VSLAYILAVVLLVASL-ALA----YLLSPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVLRAIAGGVAIG- 162 (295)
T ss_pred HHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHHHHHHHHHHhC-
Confidence 4666666666666664 122 12355555555667778899995 7999997654 445566654555543332
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCccc
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSP 173 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL 173 (277)
.. .+...++.+....+..+..-=.+|..+. ++|.+..|+++
T Consensus 163 ~~-------~s~wll~~~~~~~lfla~~kR~~E~~~~-~~~~~~~r~~~ 203 (295)
T PRK12324 163 VP-------LSPWLLLCTALLSLFLAAGKRKAELRLL-EDTGAKHRKVL 203 (295)
T ss_pred CC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccccc
Confidence 22 3433344444555666666666777776 66655555553
No 51
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=94.63 E-value=0.77 Score=42.56 Aligned_cols=34 Identities=24% Similarity=0.053 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 136 ATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 136 ~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
+...+..+-..+..++.+..||+.|+ |.|++|-|
T Consensus 47 ~~~~l~~l~~~~~~~ag~~iND~~D~-eiD~~n~r 80 (289)
T COG0382 47 KLLLLAFLAFFLARSAGYVINDLADR-EIDRINPR 80 (289)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhh-hccCCCCC
Confidence 45667777788889999999999999 99999987
No 52
>PRK08238 hypothetical protein; Validated
Probab=94.26 E-value=4.4 Score=40.65 Aligned_cols=105 Identities=15% Similarity=0.092 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHheeeccCCcccccccchH-HHHHhhhhHHHHHHHHHHhc
Q 023777 46 RTGTLVTAYLLLVLGFIGLTWASVEAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGE-PLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 46 ~~~v~~~~~~~l~~~~~Gl~~~l~~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGE-l~v~l~~G~l~v~g~yyvq~ 124 (277)
+++...++..++++|+. +. +..++....+.+..++....||. ++|++++-+ +..++.++.-.+.|+. + .
T Consensus 272 ~~~A~~~~~~l~~~~~~-l~----~~l~~~~~~~~~~~~~~~~~Ys~---~lKr~~~~~~~~la~~~~lr~~~G~~-a-~ 341 (479)
T PRK08238 272 IPFGLAAAPLLLLAGLA-LA----LALGPAFLLVLLAYLALTLAYSL---RLKRKVLVDVLTLAALYTLRIIAGAA-A-I 341 (479)
T ss_pred HHHHHHHHHHHHHHHHH-HH----HHHhHHHHHHHHHHHHHHHHhhH---HhcCCccccchHHHHHHHHHHHHHHH-H-h
Confidence 46666666666666642 22 22355555555666677889994 799999654 5556676655555543 2 2
Q ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 125 STRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 125 g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
+ .++..++.+... ++...+-+..-..|. +.|++.|+
T Consensus 342 ~--------~~~s~wll~~~~-~~~l~la~~KR~~El-~~~~~~~~ 377 (479)
T PRK08238 342 G--------VALSFWLLAFSM-FFFLSLALVKRYTEL-RRALQRGK 377 (479)
T ss_pred c--------cCHHHHHHHHHH-HHHHHHHHHHhHHHH-HHHHhcCC
Confidence 2 233444443222 445556666677777 77777775
No 53
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=92.77 E-value=1.8 Score=39.68 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhc
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTER 181 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~ 181 (277)
..++..+-..+..++....||+-|+ |.|+++ |++=|..=|+-+
T Consensus 38 ~~~l~~l~~~l~~~a~~~~Nd~~D~-~~D~~~-r~~Rpl~~G~is 80 (279)
T PRK12884 38 EALLGFLTAFFASGSANALNDYFDY-EVDRIN-RPDRPIPSGRIS 80 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH-hhhhcc-CCCCCCCCCCCC
Confidence 3444445566777788889999999 999999 677777667543
No 54
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=92.13 E-value=2.2 Score=40.13 Aligned_cols=44 Identities=14% Similarity=-0.008 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhc
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTER 181 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~ 181 (277)
..+...+-..+..++-+..||+-|+ |-|+++.| ++=|.-=|+-.
T Consensus 45 ~~~~~~~g~~l~~~a~~~~Nd~~D~-~iD~~~~RT~~RPl~sG~is 89 (294)
T PRK12873 45 LLLLIILGGLAVSGAGCIANDLWDR-RIDRKVERTKNRPLARGKIS 89 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCcCCCCCCCCCCCC
Confidence 3445556667888899999999999 99998887 46665555543
No 55
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=91.98 E-value=2.5 Score=37.42 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhhhcC-Ccccceeechhc
Q 023777 143 LLVGLTTSLILFCSHFHQVVEGDRNVG-KMSPLVRLGTER 181 (277)
Q Consensus 143 lp~gll~~~ill~Nn~~D~~e~D~~~G-k~TL~v~lG~~~ 181 (277)
+...+....+...||.-|. |.|+.+. |..-|..=|+-+
T Consensus 30 l~~~~~~~~~~~~Nd~~D~-~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 30 LAVFLLQLAVYLLNDYFDY-EEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred HHHHHHHHHHHHhhChhhh-hcCcccccccCcchhHHHHh
Confidence 3344778888899999999 9999963 334344344444
No 56
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=91.81 E-value=5.6 Score=36.67 Aligned_cols=47 Identities=4% Similarity=-0.024 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccce-eechhcHHH
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPLV-RLGTERGSV 184 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~v-~lG~~~a~~ 184 (277)
..++..+...+..++....||+-|+ |.|+++.| |.+|. ++.++.+..
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~-~~D~~~~Rt~~RPl~sG~is~~~a~~ 87 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDR-AIDARNPRTKNRPLVSGLISKKEART 87 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCccCCCCCCCCCcCHHHHHH
Confidence 3556666777889999999999999 99999743 33333 344444443
No 57
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=91.56 E-value=7.1 Score=36.11 Aligned_cols=33 Identities=9% Similarity=-0.007 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
..++..+...+..++-...||+-|+ |-|+++.|
T Consensus 37 ~~~l~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~R 69 (279)
T PRK12869 37 PLIPLLIGGTLASGGSAAFNHGIER-DIDKVMSR 69 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHhc-CCCCCCCC
Confidence 3445555666778888999999998 99999764
No 58
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=91.53 E-value=1.3 Score=41.59 Aligned_cols=173 Identities=15% Similarity=0.060 Sum_probs=90.3
Q ss_pred hhchHHHHHHHHHHHHHheeeccCCcccccccchHHHHHhhhhHHHHHHHHHHhcCccccccccchH---HHHHHHHHHH
Q 023777 70 EAGNLRAIMLLTCAVICGYIYQCPPFRLSYQGLGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITA---TVLSASLLVG 146 (277)
Q Consensus 70 ~~~~~~il~lg~~gil~~~~YS~gP~~l~y~glGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~---~~ll~slp~g 146 (277)
.+-+|.-..+|..++...+.|+.- .|+.|-|- ..-+++|+....+|---.+ |+ .+. ..+..|-..-
T Consensus 168 lqLn~ysi~lg~~sl~~v~~ypl~-kr~TY~pq--~vLgltfnwGAllGw~A~~-g~-------~~~s~~~plYls~v~W 236 (353)
T KOG1381|consen 168 LQLNWYSIALGASSLALVITYPLM-KRFTYWPQ--LVLGLTFNWGALLGWCALK-GS-------LSPSAVLPLYLSGVCW 236 (353)
T ss_pred HhccHHHHHhcccccccEEEeehh-hhcchhHH--HHHhhhcchhhhhcchhhc-Cc-------cChhhhhHHHHhhhhh
Confidence 477888899999999999999863 25555442 3446677766666543332 32 111 1112222222
Q ss_pred HHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHHHHHHHHHHHHHHHHHH-HHhhh-hhHHHHHHHHhHHHHHHHH
Q 023777 147 LTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSVVVKWAVMILYSLLFAI-GLSRA-LPLSCIFLCAMTSPIGKLV 224 (277)
Q Consensus 147 ll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y~~l~~~-v~~g~-lP~~~ll~~lltlPla~~~ 224 (277)
.++---.. -..|- +.|.+.|.++.+-|+|++.-.++- .+....-..+... +..|. -|.+..+. . .+.+.
T Consensus 237 tl~YDTIY--AHQDK-~dDvk~gvkSTALrfG~nTK~wl~-gf~a~~ia~La~aG~~s~q~~pyy~~lg-~----~~~~L 307 (353)
T KOG1381|consen 237 TLIYDTIY--AHQDK-RDDVKIGVKSTALRFGDNTKPWLS-GFGAAQIASLAAAGIASDQTWPYYAALG-A----VAARL 307 (353)
T ss_pred hhhhhhhh--hcccc-hhhhHhcchhhhhhcCCCCchHHh-hhhHHHHHHHHHhhhccCCCchHHHHHH-H----HHHHH
Confidence 22222222 24686 999999999999999988855543 3332222222222 22232 35544322 1 12333
Q ss_pred HHHHHhhc-cCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023777 225 VSYVEENH-KDKGKIFMAKYYCVRFHALFGAALVAGLITARIL 266 (277)
Q Consensus 225 ~~~~~~~~-~~~~~~~~~~~~t~k~~~l~~lll~iglll~~~~ 266 (277)
.....+.. +++++ +.+ --+.+.-.|+.+..|+.+++++
T Consensus 308 ~~~i~~vdiDnp~d---C~k-~f~sN~ntGli~~~~i~~d~ll 346 (353)
T KOG1381|consen 308 GSQIYKVDIDNPSD---CWK-KFKSNSNTGLILFSGIVLDTLL 346 (353)
T ss_pred HhheeeeecCChHH---HHH-HHHhcCcchHHHHHHHHHHHHH
Confidence 33333321 12221 211 2233345677777777777664
No 59
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=91.34 E-value=9.6 Score=35.07 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccce-eechhcHHHHHHHHHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPLV-RLGTERGSVVVKWAVMI 192 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~v-~lG~~~a~~ly~~l~~~ 192 (277)
.++..+...+..++-...||+-|+ |.|+++.| |.+|. ++-++.+......+..+
T Consensus 37 ~~l~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~ 94 (280)
T TIGR01473 37 LLLTLLGTTLAAASANAFNMYIDR-DIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL 94 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-CcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 445555666888888999999999 99998653 43333 34444444443333333
No 60
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=90.80 E-value=3.3 Score=38.95 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhhhhcC-Ccccce---eechhcHHHHHHHHHHH
Q 023777 139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVG-KMSPLV---RLGTERGSVVVKWAVMI 192 (277)
Q Consensus 139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~G-k~TL~v---~lG~~~a~~ly~~l~~~ 192 (277)
++..+...+..++....||+.|+ |.||++- |+.=|. ++.++.|......+..+
T Consensus 49 llafl~~~l~~sa~y~iND~~D~-e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~ 105 (295)
T PRK12324 49 LLAFVLFCLASSAVYLVNDIRDV-EADRLHPTKRNRPIASGVVSVSLAYILAVVLLVA 105 (295)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH-HhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHH
Confidence 34444455667888999999999 9999973 333333 34445444433333333
No 61
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=90.40 E-value=6.7 Score=36.00 Aligned_cols=40 Identities=20% Similarity=-0.046 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeech
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGT 179 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~ 179 (277)
.++..+...+..++....||+-|+ |.|+.+. ++=|..=|+
T Consensus 40 ~~l~~l~~~l~~~~~~~~Nd~~D~-~iD~~~~-~~Rpl~~G~ 79 (276)
T PRK12882 40 TGLAFAAVFLATGAGNAINDYFDR-EIDRINR-PDRPIPSGA 79 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-ccccccC-CCCCcCCCC
Confidence 344555566777888899999999 9999754 444544454
No 62
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=90.37 E-value=10 Score=35.57 Aligned_cols=34 Identities=6% Similarity=-0.054 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM 171 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~ 171 (277)
..++..+...+..++-+..||+-|+ |-|+++-|+
T Consensus 38 ~l~l~~~~~~~~rsag~~~Ndi~Dr-~iD~~~~RT 71 (286)
T PRK12895 38 KILLILIAAVSARTSAMSINRIEGL-RYDMINPRK 71 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh-cccCCCCcC
Confidence 4444555566888888999999999 999998543
No 63
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.86 E-value=9.3 Score=35.36 Aligned_cols=46 Identities=11% Similarity=-0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSV 184 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~ 184 (277)
.++..+...+..++-...||+-|+ |-|+++.| ++=|.-=|+-..+.
T Consensus 42 ~~~~~~~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~RPl~sG~is~~~ 88 (281)
T TIGR01474 42 LGLFTVGAILMRGAGCVINDIWDR-DFDPQVERTKSRPLASGAVSVRQ 88 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhh-cccccCCcccCCCCCCCCcCHHH
Confidence 334444555667888899999999 99997765 23343345444333
No 64
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=89.80 E-value=6.7 Score=36.70 Aligned_cols=48 Identities=10% Similarity=-0.116 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSVVV 186 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~ly 186 (277)
.++..+-..+..++-+..||+-|+ |-|+++.| ++-|..=|+-+.+...
T Consensus 47 l~l~~~g~~~~~~a~~~~Nd~~Dr-~iD~~~~RT~~RPL~sG~is~~~A~ 95 (289)
T PLN02809 47 LALFGCGALLLRGAGCTINDLLDR-DIDKKVERTKLRPIASGALTPFQGV 95 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHh-ccccCCCCCCCCCCCCCCCCHHHHH
Confidence 334555566788888999999999 99998876 4666666765444433
No 65
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=89.37 E-value=13 Score=34.70 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC---cccc-eeechhcHHHHHHHHHHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK---MSPL-VRLGTERGSVVVKWAVMIL 193 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk---~TL~-v~lG~~~a~~ly~~l~~~~ 193 (277)
.++..+...+..++-...||+-|+ |-|+++.| |.+| =++.++.|......+..++
T Consensus 46 ~~l~~l~~~l~~aa~~~iNd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g 104 (296)
T PRK04375 46 LLLTLLGIALVAGAAGALNNYIDR-DIDAKMERTKNRPLVTGRISPREALIFGLVLGVLG 104 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-ccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 344455556778888899999999 99998653 3333 2344444444433333333
No 66
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=89.25 E-value=3.7 Score=38.54 Aligned_cols=46 Identities=9% Similarity=-0.089 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhcCCCCChhhhhcCCcccceeec---hhcHHHHHHHHHHHH
Q 023777 146 GLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLG---TERGSVVVKWAVMIL 193 (277)
Q Consensus 146 gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG---~~~a~~ly~~l~~~~ 193 (277)
.+...+....||+-|. |.|++++++ =|+.=| ++.+......+..++
T Consensus 64 ~l~~~~~n~~NDy~D~-d~D~~~~~~-Rpi~~G~is~~~a~~~~~~l~~~~ 112 (306)
T TIGR02056 64 PCLTGYTQTINDFYDR-DIDAINEPY-RPIPSGAISEPEVITQIVLLFIAG 112 (306)
T ss_pred HHHHHHHHHHHhHhhh-hhhccCCCC-CCCCCCccCHHHHHHHHHHHHHHH
Confidence 5666777899999999 999988753 344334 444443333333333
No 67
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=88.67 E-value=5.4 Score=36.88 Aligned_cols=46 Identities=11% Similarity=-0.016 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGSV 184 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~~ 184 (277)
.++..+...+..++-...||+-|+ |-|+++.| ++=|..=|+-..+.
T Consensus 47 ~ll~~l~~~l~~~a~~~~Nd~~D~-~iD~~~~Rt~~Rpl~sG~is~~~ 93 (285)
T PRK12847 47 LVLFIIGSVLMRSAGCIINDIFDR-KIDKHVARTKNRPLASGALSVKQ 93 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHh-hhccCCCcccCCCCCCCCcCHHH
Confidence 344444556777888899999999 99997665 24444445444333
No 68
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=88.54 E-value=18 Score=33.21 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccce-eechhcHHHHHHHHHHHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLV-RLGTERGSVVVKWAVMIL 193 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v-~lG~~~a~~ly~~l~~~~ 193 (277)
.++..+...+..++-...||+-|+ |.|+++.+ |.+|. ++-++.+......+..++
T Consensus 39 ~~l~~l~~~l~~~~~~~iNd~~D~-~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~ 95 (279)
T PRK09573 39 IILAALVVFLVCAGGNVINDIYDI-EIDKINKPERPIPSGRISLKEAKIFSITLFIVG 95 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc-ccccccCCCCCcCCCccCHHHHHHHHHHHHHHH
Confidence 445555666778888899999999 99998642 33332 444555554444444333
No 69
>PLN02776 prenyltransferase
Probab=88.40 E-value=21 Score=34.44 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeech
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGT 179 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~ 179 (277)
.++..+-..+..++=+..||+-|+ |-|++..| +.=|.-=|+
T Consensus 31 l~~~~lg~~l~~aaa~~~N~i~Dr-diD~~m~RT~~RPLpsGr 72 (341)
T PLN02776 31 LGWTCAGTMLCAASANTLNQVFEV-KNDSKMKRTMRRPLPSGR 72 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-hhcccCCCCCCCCCCCCC
Confidence 455566777888899999999999 99988665 233333344
No 70
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=87.91 E-value=22 Score=33.16 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.8
Q ss_pred HHhhcCCCCChhhhhcCCccc
Q 023777 153 LFCSHFHQVVEGDRNVGKMSP 173 (277)
Q Consensus 153 ll~Nn~~D~~e~D~~~Gk~TL 173 (277)
...||+.|. |.||++.||..
T Consensus 62 y~iND~~D~-D~Dr~~prk~~ 81 (282)
T PRK12875 62 YGVNDVFDA-DTDELNPKKDR 81 (282)
T ss_pred hcchhhhhh-hccccCCCccC
Confidence 457999999 99999888763
No 71
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=87.91 E-value=23 Score=33.40 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechh
Q 023777 142 SLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTE 180 (277)
Q Consensus 142 slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~ 180 (277)
.+...+..++-...||+-|+ |-|+++.| +.=|.-=|+-
T Consensus 53 ~lg~~l~~aaa~~~Nd~~D~-~iD~~~~Rt~~RPlpsG~i 91 (306)
T PRK13362 53 VIGLSLVVASGCALNNCIDR-DIDAKMQRTRNRVTVTGEI 91 (306)
T ss_pred HHHHHHHHHHHHHHhChHHh-CcCCCCCCCCCCCCCCCCC
Confidence 34566777888999999998 99998765 2333333543
No 72
>PRK13592 ubiA prenyltransferase; Provisional
Probab=85.87 E-value=6.3 Score=37.34 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccce-eechhcHHHHHHHHHHHHH
Q 023777 132 LSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLV-RLGTERGSVVVKWAVMILY 194 (277)
Q Consensus 132 ~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~l~~~~y 194 (277)
++...+.++..+-..+..++-...||+.|+ |-|+.|.-. -+|. ++-++.|+.+-..+..++.
T Consensus 42 ~~~~~~~~l~~~~vf~~~~~gniiNDy~D~-EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l 105 (299)
T PRK13592 42 FRIGIQEFVGVFTVFGFWMILRIADDFKDY-ETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSV 105 (299)
T ss_pred CCCchHHHHHHHHHHHHHHHhHHHHHHhhH-HHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 334456666666666777889999999999 999887532 3332 4555666544434433333
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.78 E-value=30 Score=32.17 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccceeechhcHH
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLVRLGTERGS 183 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v~lG~~~a~ 183 (277)
.++..+...+..++-+..||+-|+ |-|+++.|. +=|.-=|+-+-+
T Consensus 41 ~~l~~l~~~l~~~a~~~~Nd~~Dr-~iD~~~~RT~~RPL~sG~is~~ 86 (284)
T PRK12888 41 LLLVTVAMVGARTFAMAANRIIDR-EIDARNPRTAGRELVTGAVSVR 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhh-CCCCCCCCCCCCCCCCCCCCHH
Confidence 445666777888889999999999 999998642 223333554433
No 74
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.67 E-value=31 Score=32.19 Aligned_cols=46 Identities=7% Similarity=-0.078 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhcHH
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTERGS 183 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~a~ 183 (277)
...+..+...+..++-...||+-|+ |-|+++.| +.=|..=|+-..+
T Consensus 43 ~l~~~~l~~~l~~~a~~~~Nd~~D~-~iD~~~~RT~~RPL~sG~is~~ 89 (291)
T PRK12886 43 QLDWILMAMVGARTAAMGFNRLIDA-EIDARNPRTAGRAIPAGLISKG 89 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhh-ccCCCCCCCCCCCCCCCCcCHH
Confidence 3445556666777777888999999 99998764 1234444544333
No 75
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=85.57 E-value=13 Score=34.14 Aligned_cols=44 Identities=11% Similarity=-0.087 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhhcCCccccee---echhcHHHHHHHH
Q 023777 144 LVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVR---LGTERGSVVVKWA 189 (277)
Q Consensus 144 p~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~---lG~~~a~~ly~~l 189 (277)
...+..++....||+-|+ |.|+.+. ++=|.. +-++.+......+
T Consensus 45 ~~~~~~~a~~~~Nd~~D~-~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l 91 (277)
T PRK12883 45 VVYLGCSGGNTINDYFDY-EIDKINR-PNRPLPRGAMSRKAALYYSLLL 91 (277)
T ss_pred HHHHHHHHHhHHHhhhhH-hccccCC-CCCCCCCCccCHHHHHHHHHHH
Confidence 334445678899999999 9999765 444443 4455555444333
No 76
>PRK13595 ubiA prenyltransferase; Provisional
Probab=85.00 E-value=15 Score=34.61 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCCChhhhhcCCcc
Q 023777 147 LTTSLILFCSHFHQVVEGDRNVGKMS 172 (277)
Q Consensus 147 ll~~~ill~Nn~~D~~e~D~~~Gk~T 172 (277)
.....+--.||+-|+ |.|++|.|+-
T Consensus 58 p~n~~~~giND~fD~-eiDa~Npr~~ 82 (292)
T PRK13595 58 PFNLLIYGLNDLADR-ETDAASPRKG 82 (292)
T ss_pred HHHHHHHHHHhhhhh-hhhccCCCCC
Confidence 344466778999999 9999988773
No 77
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=84.81 E-value=6.6 Score=35.98 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc
Q 023777 139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM 171 (277)
Q Consensus 139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~ 171 (277)
+...+...+..++....||.-|+ |.|+.+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~N~~~D~-~~D~~n~~~ 70 (285)
T PRK12872 39 WLLLLITFLIAAAVYIINYLTDL-EEDIINKPE 70 (285)
T ss_pred HHHHHHHHHHHHHHHHhhhhcCC-chhhcCCCc
Confidence 44555677888889999999999 999987553
No 78
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=84.54 E-value=33 Score=31.63 Aligned_cols=29 Identities=17% Similarity=0.031 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 141 ASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 141 ~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
..+...+..++-...||+-|+ |-|+++.|
T Consensus 47 ~~~g~~l~~~a~~~~Nd~~D~-~iD~~~~R 75 (282)
T PRK12848 47 FVLGVFLMRAAGCVINDYADR-DFDGHVKR 75 (282)
T ss_pred HHHHHHHHHHHHHHHHhhHHh-ccCCCCCC
Confidence 334445667888999999999 99987554
No 79
>PRK08238 hypothetical protein; Validated
Probab=84.35 E-value=17 Score=36.54 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeec---hhcHHHHHHHHHHHH
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLG---TERGSVVVKWAVMIL 193 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG---~~~a~~ly~~l~~~~ 193 (277)
..++..+..++..++....||+-|+ |.||++-| +.=|.-=| .+.|..+...+..++
T Consensus 227 ~~~~~f~~~~l~~sa~~~~ND~~D~-e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 227 AALLAFLAFSLCASAVYILNDLLDL-EADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHh-hhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455556677899999999999999 99999843 44454444 444444333333333
No 80
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=84.14 E-value=38 Score=32.02 Aligned_cols=43 Identities=5% Similarity=-0.049 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC-cccceeechhc
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK-MSPLVRLGTER 181 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk-~TL~v~lG~~~ 181 (277)
.++..+...+.-++=+..||+-|+ |-|+++-| ++=|.-=|+-.
T Consensus 49 ~~~~~~a~~~~Rsag~~~Nd~~Dr-diD~~~~RT~~RPLpsG~is 92 (300)
T PRK12876 49 ISLGGSAFFCARTVGIIVNQIIDC-AIDKKNPRTSSRVLPAKLLS 92 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHh-cccCCCCCCCCCCCCCCCCC
Confidence 557777778888888999999999 99999986 34444446533
No 81
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=84.00 E-value=17 Score=33.92 Aligned_cols=43 Identities=12% Similarity=-0.118 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCc-ccceeechhc
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKM-SPLVRLGTER 181 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v~lG~~~ 181 (277)
.++..+...+..++-...||+-|+ |-|+++.|. +=|.-=|+-+
T Consensus 48 ~~l~~lg~~~~~~a~~~~Nd~~D~-~iD~~~~Rt~~RPL~sG~is 91 (290)
T PRK12870 48 VGIIILGALATSAAGCVVNDLWDR-DIDPQVERTRFRPLASRRLS 91 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHh-ccCCCCCcccCCCCCCCCcC
Confidence 334455566778888999999999 999875543 3444445433
No 82
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=82.31 E-value=18 Score=33.89 Aligned_cols=40 Identities=8% Similarity=0.006 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHH-HHhhcCCCCChhhhhcCCcccce
Q 023777 135 TATVLSASLLVGLTTSLI-LFCSHFHQVVEGDRNVGKMSPLV 175 (277)
Q Consensus 135 ~~~~ll~slp~gll~~~i-ll~Nn~~D~~e~D~~~Gk~TL~v 175 (277)
+|..++.++-+-...+.- --.||+-|. |.|++|.|+.=+.
T Consensus 32 ~~~~l~~~l~~~~~~n~am~~~Ndy~D~-~~d~dn~r~~g~~ 72 (282)
T PRK13105 32 DWLFVVGTVFFLIPYNLAMYGINDVFDY-ESDLRNPRKGGVE 72 (282)
T ss_pred ChHHHHHHHHHHHHHHHHHHhhhhhhhh-hcCCCCcccCCCC
Confidence 454444444433333332 366999999 9999998876553
No 83
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=82.26 E-value=39 Score=31.95 Aligned_cols=32 Identities=6% Similarity=-0.132 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
.++..+...+..++-...||+-|+ |-|++..|
T Consensus 74 ~~l~~l~~~l~~~a~~~~Nd~~Dr-~iD~~~~R 105 (314)
T PRK12878 74 LFLFFVGAIAMRGAGCTYNDIVDR-DIDAKVAR 105 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCC
Confidence 334444555667777899999998 99987543
No 84
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=81.62 E-value=46 Score=31.08 Aligned_cols=35 Identities=6% Similarity=0.047 Sum_probs=24.3
Q ss_pred hHHH-HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 135 TATV-LSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 135 ~~~~-ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
++.. ++..+...+..++-...||+-|+ |-|+++.|
T Consensus 45 ~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr-diD~~~~R 80 (291)
T PRK12874 45 GFKLLILGILAAVSARNFAMAFNRLVDR-DIDKDNPR 80 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccccCCCC
Confidence 4443 33444445566677888999999 99999864
No 85
>PRK13591 ubiA prenyltransferase; Provisional
Probab=79.10 E-value=31 Score=32.85 Aligned_cols=29 Identities=14% Similarity=0.028 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 141 ASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 141 ~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
.++..++.+.+....||.-|+ |.|+-|..
T Consensus 63 ~~~~~~L~~~s~~~iNd~~D~-eiD~IN~P 91 (307)
T PRK13591 63 TCIAGGLIIYSVYTLDRALDS-EEDAVNRS 91 (307)
T ss_pred HHHHHHHHHHHHHHHhhhccc-hhhhccCc
Confidence 566678889999999999999 99988643
No 86
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=77.89 E-value=26 Score=32.25 Aligned_cols=43 Identities=7% Similarity=-0.166 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCChhhhhcCCc-ccce-eechhcHHHHHHHH
Q 023777 146 GLTTSLILFCSHFHQVVEGDRNVGKM-SPLV-RLGTERGSVVVKWA 189 (277)
Q Consensus 146 gll~~~ill~Nn~~D~~e~D~~~Gk~-TL~v-~lG~~~a~~ly~~l 189 (277)
.+...+.-..||+-|. |.|++++++ .++. ++-++.+..+...+
T Consensus 48 ~l~~~~~n~~Nd~~D~-~~D~~~~~~Rpi~~G~is~~~a~~~~~~~ 92 (283)
T TIGR01476 48 PLGTGFSQSINDYFDR-DVDAINEPQRPIPSGIISLREVRWNWLVL 92 (283)
T ss_pred HHHHHHHHHHHhHhhh-CcccCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 3455566689999999 999987643 2222 34444554444333
No 87
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=77.57 E-value=64 Score=30.36 Aligned_cols=32 Identities=9% Similarity=0.022 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCC
Q 023777 138 VLSASLLVGLTTSLILFCSHFHQVVEGDRNVGK 170 (277)
Q Consensus 138 ~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk 170 (277)
.++..+...+..++-+..||+-|+ |-|+++-|
T Consensus 51 l~l~~lg~~l~~~a~~~~Nd~~D~-diD~~~~R 82 (300)
T PRK13106 51 LILIFLALFFLRTAGMTNDNLADL-EIDAKNPR 82 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHh-ccccCCCc
Confidence 445556667788888899999999 99998843
No 88
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=77.51 E-value=34 Score=31.89 Aligned_cols=38 Identities=8% Similarity=-0.055 Sum_probs=25.3
Q ss_pred chHHHHH-HHHHHHHHHHHHHHhhcCCCCChhhhhcCCcc
Q 023777 134 ITATVLS-ASLLVGLTTSLILFCSHFHQVVEGDRNVGKMS 172 (277)
Q Consensus 134 ~~~~~ll-~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~T 172 (277)
++|...+ ..+...+.-.+....||.-|. |.|+++.+||
T Consensus 37 f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~-~~g~D~~~rt 75 (296)
T PRK05951 37 FDPLLGALMLLGYFLLHASLNVFNDYKDY-VLDCDHHETT 75 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhHHHH-hcCCcccccc
Confidence 5555443 334555777788899999997 7776665443
No 89
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=77.43 E-value=16 Score=34.52 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHhhcCCCCChhhhhcCCcccceeech
Q 023777 152 ILFCSHFHQVVEGDRNVGKMSPLVRLGT 179 (277)
Q Consensus 152 ill~Nn~~D~~e~D~~~Gk~TL~v~lG~ 179 (277)
+.-.||+-|+ |.|+.+ |.+.|.-=|+
T Consensus 69 i~~iNd~~D~-~iD~in-kp~rPiasG~ 94 (308)
T PRK12887 69 IVGLNQLTDI-EIDRIN-KPHLPLAAGE 94 (308)
T ss_pred HHHHhhhhhH-HHHhcC-CCCCCcCCcc
Confidence 3449999999 999975 4666654444
No 90
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=74.60 E-value=28 Score=32.73 Aligned_cols=46 Identities=7% Similarity=-0.115 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCChhhhhcCCc-ccc-eeechhcHHHHHHHHHHHH
Q 023777 147 LTTSLILFCSHFHQVVEGDRNVGKM-SPL-VRLGTERGSVVVKWAVMIL 193 (277)
Q Consensus 147 ll~~~ill~Nn~~D~~e~D~~~Gk~-TL~-v~lG~~~a~~ly~~l~~~~ 193 (277)
+..++.-..||+-|. |.|++++++ .+| =++.++.+......+..++
T Consensus 76 l~~~~~~~~Nd~~D~-~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~ 123 (314)
T PRK07566 76 LLCGTSQTLNDYFDR-EVDAINEPYRPIPSGAISLRWVLYLIAVLTVLG 123 (314)
T ss_pred HHHHHHHHHhhhhcc-CccccCCCCCCCCCceeCHHHHHHHHHHHHHHH
Confidence 345677789999999 999976532 222 2455555555544444433
No 91
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=74.57 E-value=48 Score=31.09 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhc
Q 023777 142 SLLVGLTTSLILFCSHFHQVVEGDRNV 168 (277)
Q Consensus 142 slp~gll~~~ill~Nn~~D~~e~D~~~ 168 (277)
.+...+..++-...||+-|+ |.|+.+
T Consensus 47 ~l~~~l~~~ag~~iND~~D~-~~D~~~ 72 (297)
T PRK12871 47 ALIGLFGFEAGFVLNDYVDR-KRDRLD 72 (297)
T ss_pred HHHHHHHHHHHHHHhhHHHH-hcCcch
Confidence 34333444555699999999 999753
No 92
>PLN00012 chlorophyll synthetase; Provisional
Probab=72.89 E-value=48 Score=32.29 Aligned_cols=23 Identities=13% Similarity=-0.062 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCCChhhhhcC
Q 023777 146 GLTTSLILFCSHFHQVVEGDRNVG 169 (277)
Q Consensus 146 gll~~~ill~Nn~~D~~e~D~~~G 169 (277)
.+...+.-..||+-|. |.|++++
T Consensus 133 ~L~~~~an~iNDy~D~-~iD~~~~ 155 (375)
T PLN00012 133 PFLTGYTQTINDWYDR-EIDAINE 155 (375)
T ss_pred HHHHHHHHHHHCeecH-hhhccCC
Confidence 3445567789999999 9998875
No 93
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=67.64 E-value=82 Score=30.09 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCCChhhhhcCCcccce---eechhcHHHHHHHHHHHHH
Q 023777 149 TSLILFCSHFHQVVEGDRNVGKMSPLV---RLGTERGSVVVKWAVMILY 194 (277)
Q Consensus 149 ~~~ill~Nn~~D~~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l~~~~y 194 (277)
+++-...||+-|+ |.|+.++| |=|. ++-++.+......+..++.
T Consensus 63 ~~a~~~iND~~D~-~~D~~n~r-tRpl~~G~is~~~al~~~~~l~~la~ 109 (331)
T PRK12392 63 TGFSQSVNDYFDL-ELDRVNEP-TRPIPSGRLSEKEALWNSIIVLLLAI 109 (331)
T ss_pred HHHHhHHhcceee-cccccCCC-CCCCCcCCcCHHHHHHHHHHHHHHHH
Confidence 3445789999999 99998754 3333 3445555555555544444
No 94
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=59.92 E-value=1.6e+02 Score=27.88 Aligned_cols=35 Identities=3% Similarity=-0.062 Sum_probs=23.7
Q ss_pred chHHHHHHHHHH-HHHHHHHHHhhcCCCCChhhhhcC
Q 023777 134 ITATVLSASLLV-GLTTSLILFCSHFHQVVEGDRNVG 169 (277)
Q Consensus 134 ~~~~~ll~slp~-gll~~~ill~Nn~~D~~e~D~~~G 169 (277)
+++...+.++.. .+.-.+.-..||.-|. +.|..+.
T Consensus 36 ~~~~~~ll~ll~~~~~~~~~N~~NDy~D~-~~g~D~~ 71 (317)
T PRK13387 36 FDWLLFLAFMVAMLAFDIATTAINNYMDF-KKALDTA 71 (317)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHH-hcCCCcc
Confidence 566554444443 4467778889999998 8766654
No 95
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=51.03 E-value=93 Score=28.59 Aligned_cols=24 Identities=13% Similarity=-0.038 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChh
Q 023777 140 SASLLVGLTTSLILFCSHFHQVVEG 164 (277)
Q Consensus 140 l~slp~gll~~~ill~Nn~~D~~e~ 164 (277)
+..+...+...+....||+-|+ |+
T Consensus 42 l~~l~~~l~~~~~n~~Ndy~D~-~~ 65 (293)
T PRK06080 42 LALLAALLLQIATNLANDYGDY-VK 65 (293)
T ss_pred HHHHHHHHHHHHHHHHHhHHHh-cc
Confidence 3344555677788899999998 65
No 96
>PLN02878 homogentisate phytyltransferase
Probab=41.00 E-value=96 Score=29.19 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=23.2
Q ss_pred HHHHHHHHhhcCCCCChhhhhcCCcccceeechhc
Q 023777 147 LTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTER 181 (277)
Q Consensus 147 ll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~ 181 (277)
+..--+.=.||+.|+ |-|| .+|-..|.-=|+=.
T Consensus 34 ~~niyivglNd~~D~-EIDk-INkP~rPIpSG~iS 66 (280)
T PLN02878 34 LMNIYIVGLNQLYDI-EIDK-VNKPYLPLASGEFS 66 (280)
T ss_pred hhhhheechhhhhhh-cccc-cCCCCCCCCCCCCC
Confidence 333344457999999 9996 66778888777533
No 97
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=40.60 E-value=3.3e+02 Score=25.96 Aligned_cols=88 Identities=11% Similarity=-0.048 Sum_probs=47.0
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhhcCCCCChhhhhcCCc----ccceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023777 134 ITATVLSASL-LVGLTTSLILFCSHFHQVVEGDRNVGKM----SPLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPL 208 (277)
Q Consensus 134 ~~~~~ll~sl-p~gll~~~ill~Nn~~D~~e~D~~~Gk~----TL~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~ 208 (277)
.++..++.++ -..+.+.+---.||.-|+ |-|++-.|. +..=++-++.+...=..+..++..++...+ .|.
T Consensus 49 ~~~~l~~~~~~g~~L~a~~a~a~N~~~Dr-DID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~v----n~l 123 (304)
T COG0109 49 INPLLLLLTLLGGALGAGGAGAFNMYIDR-DIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLV----NLL 123 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4444443333 344566666778999999 999765442 444455556655433344444443332221 344
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 023777 209 SCIFLCAMTSPIGKLVVSY 227 (277)
Q Consensus 209 ~~ll~~lltlPla~~~~~~ 227 (277)
...+. +.++-.-.-.+..
T Consensus 124 aa~l~-~~gi~~Yv~vYT~ 141 (304)
T COG0109 124 AAVLG-LFGIFFYVVVYTL 141 (304)
T ss_pred HHHHH-HHHHHHHhhhhhh
Confidence 44443 5555554444444
No 98
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=37.85 E-value=35 Score=23.53 Aligned_cols=32 Identities=3% Similarity=-0.102 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcc
Q 023777 140 SASLLVGLTTSLILFCSHFHQVVEGDRNVGKMS 172 (277)
Q Consensus 140 l~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~T 172 (277)
++++...++..=.+-.|+++|. ++|-..|.=+
T Consensus 9 li~iv~~Cl~lyl~ald~~CDQ-g~~F~~GIC~ 40 (47)
T PRK10299 9 LVVVVLACLLLWAQVFNMMCDQ-DVQFFSGICA 40 (47)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-Cccceeeeee
Confidence 3444555666677778999999 9998888543
No 99
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=36.41 E-value=18 Score=31.69 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.6
Q ss_pred HHHHHHhhcCCCCChhhh----------hcCCcccceeec
Q 023777 149 TSLILFCSHFHQVVEGDR----------NVGKMSPLVRLG 178 (277)
Q Consensus 149 ~~~ill~Nn~~D~~e~D~----------~~Gk~TL~v~lG 178 (277)
-.+..+.|+++|+ .+|. +.||.|+|....
T Consensus 159 G~a~Qi~dd~~D~-~~d~~~~gk~~~D~~~gr~tlp~~~~ 197 (236)
T cd00867 159 GLAFQLTDDLLDV-FGDAEELGKVGSDLREGRITLPVILA 197 (236)
T ss_pred HHHHHHHHHhccc-cCChHHHCccHHHHHcCCchHHHHHH
Confidence 3467889999999 8877 899999998776
No 100
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=33.61 E-value=4e+02 Score=24.77 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=21.2
Q ss_pred chHHHHHHHHH-HHHHHHHHHHhhcCCCCChh
Q 023777 134 ITATVLSASLL-VGLTTSLILFCSHFHQVVEG 164 (277)
Q Consensus 134 ~~~~~ll~slp-~gll~~~ill~Nn~~D~~e~ 164 (277)
++|...+.++. ..+.-...-+.||.-|. ++
T Consensus 25 f~~~~~ll~~~~~~~~q~~~N~~NDy~D~-~~ 55 (284)
T TIGR00751 25 FVWLVALLALATAVLLQILSNYANDYGDG-IK 55 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHH-hc
Confidence 67765555553 34677788889999998 65
No 101
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=28.85 E-value=4.1e+02 Score=23.50 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=47.8
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhccCchhhhhhHHHHHHHHHHHHHHHH
Q 023777 178 GTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENHKDKGKIFMAKYYCVRFHALFGAALV 257 (277)
Q Consensus 178 G~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~~~~~~~~~~~~~t~k~~~l~~lll~ 257 (277)
+.+.-+..-..+..++.+...-..+....|-..--+ -.-+|+..-|+--+-+... ....+.+......+++...
T Consensus 67 ~l~~lr~~~filvIA~~V~~ve~~l~~~~p~ly~~L-GiflpLI~tNCaVLG~a~~-----~~~~~~~~~~s~~~glg~G 140 (190)
T TIGR01943 67 NLEFLRTIVFILVIAALVQFVEMVVRKTSPDLYRAL-GIFLPLITTNCAVLGVALL-----NIQLDYNLLQSIVYAVGAG 140 (190)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH-hhhhhHHHHHHHHHHHHHH-----HHHccCCHHHHHHHHHHHH
Confidence 445444444555666665566666666677643222 3566888777776644310 0001112222345555555
Q ss_pred HHHHHHHH--------HhhcccCcc
Q 023777 258 AGLITARI--------LVTKHIPKL 274 (277)
Q Consensus 258 iglll~~~--------~~~~~~~~~ 274 (277)
+|+.++.. +..+++||-
T Consensus 141 lGf~lal~l~a~iRE~l~~~~vP~~ 165 (190)
T TIGR01943 141 LGFTLAMVIFAGIRERLDLSDVPKA 165 (190)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCcc
Confidence 55555443 677788874
No 102
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=28.12 E-value=1e+02 Score=25.09 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 023777 48 GTLVTAYLLLVLG 60 (277)
Q Consensus 48 ~v~~~~~~~l~~~ 60 (277)
....++..++++|
T Consensus 42 K~I~la~~Lli~G 54 (115)
T PF05915_consen 42 KSIALAVFLLIFG 54 (115)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 103
>COG3389 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.99 E-value=4.6e+02 Score=24.34 Aligned_cols=59 Identities=7% Similarity=-0.081 Sum_probs=27.0
Q ss_pred cceeechhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 023777 173 PLVRLGTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEEN 231 (277)
Q Consensus 173 L~v~lG~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~ 231 (277)
+++++|+|+-.+.........-+.-.........+...-..-..++++++...-.+.+.
T Consensus 51 l~Ik~~~kwI~r~i~~v~V~~~l~yvfl~llsIf~~~~~~i~~~si~~aI~~~~lL~~~ 109 (277)
T COG3389 51 LAIKLGRKWIFRGIYSVAVASVLFYVFLILLSIFLVLVYAINIASIGLAIGLVYLLYKY 109 (277)
T ss_pred hheeecceeeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 46677777655543222222211111222222233322112356778877766666543
No 104
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=26.63 E-value=1e+02 Score=24.15 Aligned_cols=30 Identities=13% Similarity=0.036 Sum_probs=18.7
Q ss_pred eehhccccCCcceeeeeeccCCHHHHHHHHHHHHHHHH
Q 023777 24 CPSVLYSKESHWLVISFVLLGSRTGTLVTAYLLLVLGF 61 (277)
Q Consensus 24 ~~~~~~~~~~~~~~~~~n~ig~~~~v~~~~~~~l~~~~ 61 (277)
+|+++|||++.... .+..+.+...|+++|+
T Consensus 28 FAfidFSK~~s~~~--------~~~wRalSii~FIlG~ 57 (91)
T PHA02680 28 FAFVDFSKNTSNVT--------DYVWRALSVTCFIVGA 57 (91)
T ss_pred HhhhhhhccCCCCc--------chhHHHHHHHHHHHHH
Confidence 47788888754211 1455667777777774
No 105
>PF15169 DUF4564: Domain of unknown function (DUF4564)
Probab=24.69 E-value=35 Score=30.18 Aligned_cols=69 Identities=12% Similarity=0.087 Sum_probs=35.8
Q ss_pred Cccccccc-chHHHHHhhhhHHHHHHHHHHhcCccccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcc
Q 023777 94 PFRLSYQG-LGEPLCFAAFGPFATTAFYLLLGSTRENLCLSITATVLSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMS 172 (277)
Q Consensus 94 P~~l~y~g-lGEl~v~l~~G~l~v~g~yyvq~g~~~~~~~~~~~~~ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~T 172 (277)
-+.++++| ..|...++++..+-...+||.++. +-|..+.+ .+|+..++...-+.-.. .-|+..||.|
T Consensus 12 ~L~Lkrsp~~rsWsl~~gi~siGl~~~yys~d~--------~~wK~fyv---~~c~fva~~n~edwee~-iFdK~kg~V~ 79 (187)
T PF15169_consen 12 RLHLKRSPGIRSWSLLVGIASIGLAAAYYSSDS--------LLWKLFYV---AGCLFVALQNMEDWEEA-IFDKSKGKVT 79 (187)
T ss_pred EEEEEcCCCccchhhHHHHHhcccceeeecCCc--------hHHHHHHH---HHHHHHHHhcchhhhhe-eEeccCCEEE
Confidence 34566664 667665544333333444665543 34544332 44554454433333333 4588888877
Q ss_pred cc
Q 023777 173 PL 174 (277)
Q Consensus 173 L~ 174 (277)
+-
T Consensus 80 lk 81 (187)
T PF15169_consen 80 LK 81 (187)
T ss_pred EE
Confidence 64
No 106
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=23.99 E-value=17 Score=30.60 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHHHHhhcCCCCChhhhhc--CCcccceeechhc
Q 023777 147 LTTSLILFCSHFHQVVEGDRNV--GKMSPLVRLGTER 181 (277)
Q Consensus 147 ll~~~ill~Nn~~D~~e~D~~~--Gk~TL~v~lG~~~ 181 (277)
.+..+.-+.|+++|+ +.|.+. ||.|+|..+-++.
T Consensus 151 ~~g~~~ql~nDl~~~-~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 151 ALGLAFQLTNDLLDY-EGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHHhc-cCCHHHhCCchHHHHHHHHHh
Confidence 455578899999999 999998 7889988765544
No 107
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=23.46 E-value=6.3e+02 Score=23.77 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=20.1
Q ss_pred chHHHHHHHH-HHHHHHHHHHHhhcCCCCCh--hhhh
Q 023777 134 ITATVLSASL-LVGLTTSLILFCSHFHQVVE--GDRN 167 (277)
Q Consensus 134 ~~~~~ll~sl-p~gll~~~ill~Nn~~D~~e--~D~~ 167 (277)
++|...+.++ ..-+.-...=..||.-|. + .|++
T Consensus 45 f~~~~~ll~ll~~~l~q~~~N~~NDy~D~-~~G~D~~ 80 (304)
T PRK07419 45 FRLDQFITFLLAAILILAWENLSNDVFDA-DTGIDKN 80 (304)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCcc
Confidence 5655444443 333445566788999998 6 4653
No 108
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=22.98 E-value=4.8e+02 Score=23.13 Aligned_cols=34 Identities=6% Similarity=-0.278 Sum_probs=17.1
Q ss_pred HHHHhhhhh-HHHHHHHHhHHHHHHHHHHHHHhhc
Q 023777 199 AIGLSRALP-LSCIFLCAMTSPIGKLVVSYVEENH 232 (277)
Q Consensus 199 ~~v~~g~lP-~~~ll~~lltlPla~~~~~~~~~~~ 232 (277)
.....|..| ...+....++++..+...+...+.+
T Consensus 73 ~i~~~gin~~~~ll~g~~~~L~~~i~~wk~~~~~~ 107 (205)
T PF07895_consen 73 VISQLGINLHLFLLAGLILSLYLYIFSWKKQMIRY 107 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566 3322222455666666666665443
No 109
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=22.35 E-value=5.5e+02 Score=22.76 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=46.8
Q ss_pred chhcHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHHHHHhhc---cCchhhhhhHHHHHHHHHHHHH
Q 023777 178 GTERGSVVVKWAVMILYSLLFAIGLSRALPLSCIFLCAMTSPIGKLVVSYVEENH---KDKGKIFMAKYYCVRFHALFGA 254 (277)
Q Consensus 178 G~~~a~~ly~~l~~~~y~~l~~~v~~g~lP~~~ll~~lltlPla~~~~~~~~~~~---~~~~~~~~~~~~t~k~~~l~~l 254 (277)
+.+.=+..-..+..++.+.+.-.++....|-..-.+ =.-+|+..-|+--+-+.. .++. +......+++
T Consensus 68 ~l~~lr~~~fIlvIA~~V~~ve~~l~~~~p~Ly~~L-GiflpLI~tNCaVLG~al~~~~~~~--------~~~~s~~~gl 138 (193)
T PRK05151 68 DLIYLRTLAFILVIAVVVQFTEMVVRKTSPTLYRLL-GIFLPLITTNCAVLGVALLNINLGH--------NFLQSALYGF 138 (193)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHccC--------CHHHHHHHHH
Confidence 444444444455556665566566666666643221 356688877776664431 1111 1222345555
Q ss_pred HHHHHHHHHHH--------HhhcccCcc
Q 023777 255 ALVAGLITARI--------LVTKHIPKL 274 (277)
Q Consensus 255 ll~iglll~~~--------~~~~~~~~~ 274 (277)
...+|+.++.. +..+++||-
T Consensus 139 g~GlGf~lal~lla~iRErl~~~~vP~~ 166 (193)
T PRK05151 139 GAAVGFSLVLVLFAAIRERLAVADVPAP 166 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 55555555443 677888874
No 110
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=22.33 E-value=29 Score=26.60 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.4
Q ss_pred ccCCcccccccchHHH
Q 023777 91 QCPPFRLSYQGLGEPL 106 (277)
Q Consensus 91 S~gP~~l~y~glGEl~ 106 (277)
+.||+.+...|+||+-
T Consensus 39 ~~pPFevte~GWGeF~ 54 (84)
T PF03366_consen 39 TKPPFEVTETGWGEFE 54 (84)
T ss_dssp SSTTEEEEEEESS--E
T ss_pred cCCCCEEEEeEeccEE
Confidence 5789999999999964
Done!