Query 023777
Match_columns 277
No_of_seqs 157 out of 1146
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 12:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 29.1 13 0.00046 33.5 0.4 33 151-184 211-254 (297)
2 3d31_C Sulfate/molybdate ABC t 26.7 2.9E+02 0.0099 23.6 8.9 15 255-269 98-112 (295)
3 3lom_A Geranyltranstransferase 17.6 26 0.0009 31.8 -0.1 22 164-185 248-269 (313)
4 3lsn_A Geranyltranstransferase 17.0 25 0.00085 31.8 -0.4 22 164-185 241-262 (304)
5 4f62_A Geranyltranstransferase 16.9 25 0.00085 32.1 -0.4 22 164-185 240-261 (317)
6 3ts7_A Geranyltranstransferase 16.7 27 0.00091 32.0 -0.3 22 164-185 247-268 (324)
7 3p8r_A Geranyltranstransferase 16.6 24 0.00083 31.8 -0.6 37 151-187 224-270 (302)
8 3kra_B Geranyl diphosphate syn 16.5 4.5E+02 0.015 22.9 7.8 44 139-183 63-106 (274)
9 3p8l_A Geranyltranstransferase 16.4 26 0.0009 31.6 -0.4 22 164-185 244-265 (302)
10 3uca_A Geranyltranstransferase 15.3 28 0.00097 31.8 -0.5 22 164-185 269-290 (324)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=29.12 E-value=13 Score=33.50 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCChh-----------hhhcCCcccceeechhcHHH
Q 023777 151 LILFCSHFHQVVEG-----------DRNVGKMSPLVRLGTERGSV 184 (277)
Q Consensus 151 ~ill~Nn~~D~~e~-----------D~~~Gk~TL~v~lG~~~a~~ 184 (277)
+..+.||+-|+ .+ |.+.||.|+|+.+|.++|+.
T Consensus 211 aFQI~DDilD~-~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~ 254 (297)
T 3m0g_A 211 AFQIADDILDV-EGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKS 254 (297)
T ss_dssp HHHHHTTCC----------------------CCHHHHHCSSHHHH
T ss_pred HHHHHHHHHhc-cCCHHHhCCCccchhhcCCccHHHHHHHHHHHH
No 2
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=26.75 E-value=2.9e+02 Score=23.65 Aligned_cols=15 Identities=40% Similarity=0.348 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhc
Q 023777 255 ALVAGLITARILVTK 269 (277)
Q Consensus 255 ll~iglll~~~~~~~ 269 (277)
...+|+.++.....+
T Consensus 98 ~~~lg~~~a~~l~~~ 112 (295)
T 3d31_C 98 ALLLGAPTGYILARF 112 (295)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcc
Confidence 344566667666653
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=17.56 E-value=26 Score=31.78 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.+.|+..
T Consensus 248 ~Dl~~gK~T~p~l~~l~~a~~~ 269 (313)
T 3lom_A 248 SDQANQKTTFATLFNKQQLEEE 269 (313)
T ss_dssp ------CCCHHHHSCHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHH
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=17.01 E-value=25 Score=31.78 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.+.|+..
T Consensus 241 ~Dl~egK~T~p~l~~l~~a~~~ 262 (304)
T 3lsn_A 241 ADIARDKPTYPALLGLAAAKEY 262 (304)
T ss_dssp -------CCHHHHHCHHHHHHH
T ss_pred cHHhcCCccHHHHHHHHHHHHH
No 5
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=16.86 E-value=25 Score=32.07 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.+.|+..
T Consensus 240 ~Dl~egK~T~p~l~gle~a~~~ 261 (317)
T 4f62_A 240 SDAEANKATYPKLLGLDGAKAL 261 (317)
T ss_dssp -----CCCCHHHHHHHHHHHHH
T ss_pred hHHhcCCCcHHHHHHHHHHHHH
No 6
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=16.72 E-value=27 Score=31.96 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.+.|+..
T Consensus 247 ~Dl~egK~T~p~l~gle~a~~~ 268 (324)
T 3ts7_A 247 KDRDHNKPNYPALLGLSGAKEK 268 (324)
T ss_dssp ------CCCHHHHHCHHHHHHH
T ss_pred chhhcCCccHHHHHHHHHHHHH
No 7
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=16.58 E-value=24 Score=31.82 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=20.9
Q ss_pred HHHHhhcCCCCC----------hhhhhcCCcccceeechhcHHHHHH
Q 023777 151 LILFCSHFHQVV----------EGDRNVGKMSPLVRLGTERGSVVVK 187 (277)
Q Consensus 151 ~ill~Nn~~D~~----------e~D~~~Gk~TL~v~lG~~~a~~ly~ 187 (277)
+..+.+|+-|+. -+|.+.||.|+|+.+|.+.|+..-.
T Consensus 224 aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~ 270 (302)
T 3p8r_A 224 AFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAH 270 (302)
T ss_dssp HHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHH
Confidence 445566666540 3578899999999999887776443
No 8
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=16.47 E-value=4.5e+02 Score=22.88 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHH
Q 023777 139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGS 183 (277)
Q Consensus 139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~ 183 (277)
.-++..+=++=++-+.-.|+++. ++|.+-||-|.=.+.|.+.|.
T Consensus 63 ~~~A~aiEliH~aSLIHDDI~~d-D~d~RRG~pt~h~~~G~~~AI 106 (274)
T 3kra_B 63 MAAAAAIHLVHAAAYVHEHLPLT-DGSRPVSKPAIQHKYGPNVEL 106 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCS-SSSSCCCSSCCCCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCccc-CCccCCCCCCchhhcChHHHH
Confidence 44555666777888888999954 567789999999999988765
No 9
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=16.42 E-value=26 Score=31.62 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.++|+..
T Consensus 244 ~Dl~egK~T~p~l~~l~~a~~~ 265 (302)
T 3p8l_A 244 RDEALNKSTYPALLGIAGAKDA 265 (302)
T ss_dssp -------CCHHHHHCHHHHHHH
T ss_pred hHHhcCCCcHHHHHHHHHHHHH
No 10
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=15.26 E-value=28 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred hhhhcCCcccceeechhcHHHH
Q 023777 164 GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 164 ~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+|.+.||.|+|+.+|.++|+..
T Consensus 269 ~Dl~egK~T~p~l~al~~a~~~ 290 (324)
T 3uca_A 269 KDQESNKNNYITIFGLEECKKK 290 (324)
T ss_dssp --------CHHHHHCHHHHHHH
T ss_pred hHhhcCCccHHHHHHHHHHHHH
Done!