Query 023777
Match_columns 277
No_of_seqs 157 out of 1146
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 12:38:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023777.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023777hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 25.4 78 0.0057 25.8 7.0 57 137-194 65-122 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 17.0 9.8 0.00072 31.7 -0.9 33 151-184 212-255 (290)
3 d1rtra_ a.128.1.1 (A:) Farnesy 17.0 91 0.0066 25.2 5.6 46 139-184 64-109 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 15.3 15 0.0011 30.7 -0.2 34 151-185 218-262 (299)
5 d1te7a_ b.122.1.7 (A:) Hypothe 14.5 27 0.002 25.0 1.1 14 163-176 13-26 (103)
6 d1ezfa_ a.128.1.2 (A:) Squalen 12.3 23 0.0017 30.0 0.2 24 151-175 173-196 (333)
7 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.2 1.7E+02 0.013 15.3 2.5 19 105-124 5-23 (26)
8 d2a1jb1 a.60.2.5 (B:219-296) D 7.1 50 0.0036 21.7 0.2 39 150-189 31-71 (78)
9 d1kfta_ a.60.2.3 (A:) Excinucl 6.0 50 0.0036 20.4 -0.3 36 153-189 17-54 (56)
10 d1jb0x_ f.23.20.1 (X:) Subunit 4.7 1.8E+02 0.013 15.4 1.6 23 70-92 5-27 (29)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=25.36 E-value=78 Score=25.78 Aligned_cols=57 Identities=12% Similarity=0.128 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChh-hhhcCCcccceeechhcHHHHHHHHHHHHH
Q 023777 137 TVLSASLLVGLTTSLILFCSHFHQVVEG-DRNVGKMSPLVRLGTERGSVVVKWAVMILY 194 (277)
Q Consensus 137 ~~ll~slp~gll~~~ill~Nn~~D~~e~-D~~~Gk~TL~v~lG~~~a~~ly~~l~~~~y 194 (277)
...-+|..+=++=++-+.-.|++|. +. |.+.|+.|.-...|.+.|...=-.+...++
T Consensus 65 ~~~~~A~aiEllH~asLiHDDI~d~-d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 65 TLDAPAAAVECIHAYSLIHDDLPAM-DDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTT-TCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHccchhh-hhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 4455566677788888999999998 65 689999999999999887543333333333
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=17.04 E-value=9.8 Score=31.68 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHhhcCCCCCh-----------hhhhcCCcccceeechhcHHH
Q 023777 151 LILFCSHFHQVVE-----------GDRNVGKMSPLVRLGTERGSV 184 (277)
Q Consensus 151 ~ill~Nn~~D~~e-----------~D~~~Gk~TL~v~lG~~~a~~ 184 (277)
+..+.+|+-|+ . +|.+.||.|+|+.+|.+.|..
T Consensus 212 aFQi~DD~lD~-~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~ 255 (290)
T d1rtra_ 212 MFQIKDDLLDC-YGDEAKLGKKVGSDLENNKSTYVSLLGKDGAED 255 (290)
T ss_dssp HHHHHHHHHHH-HHHHCC-------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcchHhhccCcccHhhcCCccHHHHHHHHHHHH
Confidence 55667777665 4 688889999999999887654
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=16.95 E-value=91 Score=25.22 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCChhhhhcCCcccceeechhcHHH
Q 023777 139 LSASLLVGLTTSLILFCSHFHQVVEGDRNVGKMSPLVRLGTERGSV 184 (277)
Q Consensus 139 ll~slp~gll~~~ill~Nn~~D~~e~D~~~Gk~TL~v~lG~~~a~~ 184 (277)
.-+|..+=++=++.+.-.|+.|+.+.|.+-||-|.-.+.|.+.|..
T Consensus 64 ~~~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail 109 (290)
T d1rtra_ 64 MKSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAIL 109 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHH
Confidence 3455566678888899999999834456899999999999887754
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=15.30 E-value=15 Score=30.67 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=26.1
Q ss_pred HHHHhhcCCCCCh-----------hhhhcCCcccceeechhcHHHH
Q 023777 151 LILFCSHFHQVVE-----------GDRNVGKMSPLVRLGTERGSVV 185 (277)
Q Consensus 151 ~ill~Nn~~D~~e-----------~D~~~Gk~TL~v~lG~~~a~~l 185 (277)
+..+.+|+-|+ . +|.+.||.|+|+.+|.+.+...
T Consensus 218 aFQi~DD~lD~-~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 218 AFQVQDDILDV-VGDTATLGKRQGADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHHHHHHH-HSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhh-ccchhhcCCchhhHHHCCChhHHHHHHHHHHHHH
Confidence 45666776665 3 5888899999999999887653
No 5
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=14.46 E-value=27 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.5
Q ss_pred hhhhhcCCccccee
Q 023777 163 EGDRNVGKMSPLVR 176 (277)
Q Consensus 163 e~D~~~Gk~TL~v~ 176 (277)
|.|..+||+|..+|
T Consensus 13 e~dIlsGkKTITIR 26 (103)
T d1te7a_ 13 QDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHTCCCEEEEE
T ss_pred hHHHhcCCceEEec
Confidence 78999999999876
No 6
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.27 E-value=23 Score=30.03 Aligned_cols=24 Identities=8% Similarity=-0.064 Sum_probs=21.8
Q ss_pred HHHHhhcCCCCChhhhhcCCcccce
Q 023777 151 LILFCSHFHQVVEGDRNVGKMSPLV 175 (277)
Q Consensus 151 ~ill~Nn~~D~~e~D~~~Gk~TL~v 175 (277)
+..++|-+||+ .+|.+.||.-+|.
T Consensus 173 AlQltNIlRDi-~eD~~~gR~YlP~ 196 (333)
T d1ezfa_ 173 FLQKTNIIRDY-LEDQQGGREFWPQ 196 (333)
T ss_dssp HHHHHHHHHTH-HHHHHHTCCCSCH
T ss_pred HHHHHHHHHhh-HHHHhCCcEECCH
Confidence 67889999999 9999999998884
No 7
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.22 E-value=1.7e+02 Score=15.25 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=10.6
Q ss_pred HHHHhhhhHHHHHHHHHHhc
Q 023777 105 PLCFAAFGPFATTAFYLLLG 124 (277)
Q Consensus 105 l~v~l~~G~l~v~g~yyvq~ 124 (277)
....++++++. +..||.|+
T Consensus 5 laiw~fw~ffa-lli~ylqt 23 (26)
T d1rzhh2 5 LAIYSFWIFLA-GLIYYLQT 23 (26)
T ss_dssp HHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHhc
Confidence 44555665544 34477775
No 8
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.09 E-value=50 Score=21.67 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=30.8
Q ss_pred HHHHHhhcCCCCChhhhhcCCccccee--echhcHHHHHHHH
Q 023777 150 SLILFCSHFHQVVEGDRNVGKMSPLVR--LGTERGSVVVKWA 189 (277)
Q Consensus 150 ~~ill~Nn~~D~~e~D~~~Gk~TL~v~--lG~~~a~~ly~~l 189 (277)
.+-.+++++.++ ++=+++....+.-. +|++.|..++.++
T Consensus 31 ~a~~L~~~F~s~-~~i~~A~~eeL~~i~GiG~~~A~~i~~~f 71 (78)
T d2a1jb1 31 DSQTLLTTFGSL-EQLIAASREDLALCPGLGPQKARRLFDVL 71 (78)
T ss_dssp HHHHHHHHHSSH-HHHHSCCHHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHhCCc-HHHHhhhHHHHHHhhhhhHHHHHHHHHHH
Confidence 456677788888 77777888888888 9999999888654
No 9
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.96 E-value=50 Score=20.42 Aligned_cols=36 Identities=8% Similarity=-0.008 Sum_probs=25.4
Q ss_pred HHhhcCCCCChhhhhcCCccccee--echhcHHHHHHHH
Q 023777 153 LFCSHFHQVVEGDRNVGKMSPLVR--LGTERGSVVVKWA 189 (277)
Q Consensus 153 ll~Nn~~D~~e~D~~~Gk~TL~v~--lG~~~a~~ly~~l 189 (277)
.+.+++.++ ++=+++....|.-. +|++.|..+|..+
T Consensus 17 ~L~~~F~s~-~~i~~As~eeL~~v~GIg~~~A~~I~~~l 54 (56)
T d1kfta_ 17 MLLKYMGGL-QGLRNASVEEIAKVPGISQGLAEKIFWSL 54 (56)
T ss_dssp HHHHHHSCH-HHHHHCCHHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHhCCH-HHHHHhhHHHHHhcCCCCHHHHHHHHHHH
Confidence 455667777 76666777777666 8888888877643
No 10
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.70 E-value=1.8e+02 Score=15.40 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhchHHHHHHHHHHHHHheeecc
Q 023777 70 EAGNLRAIMLLTCAVICGYIYQC 92 (277)
Q Consensus 70 ~~~~~~il~lg~~gil~~~~YS~ 92 (277)
++++|.++.+.+=-++.+|.+.+
T Consensus 5 frt~wa~lllainflvaayyfaa 27 (29)
T d1jb0x_ 5 FRTFWAVLLLAINFLVAAYYFAA 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Done!