Query 023778
Match_columns 277
No_of_seqs 212 out of 2007
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 12:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cdq_A Aspartokinase; aspartat 100.0 2.7E-52 9.4E-57 405.6 26.7 255 14-277 113-377 (510)
2 3c1m_A Probable aspartokinase; 100.0 4.4E-51 1.5E-55 394.9 25.5 254 15-277 96-354 (473)
3 3tvi_A Aspartokinase; structur 100.0 1.3E-50 4.5E-55 388.1 22.3 228 34-277 107-334 (446)
4 2j0w_A Lysine-sensitive aspart 100.0 1.6E-50 5.3E-55 388.5 22.0 251 15-277 87-344 (449)
5 3ab4_A Aspartokinase; aspartat 100.0 5.2E-46 1.8E-50 354.8 24.8 237 31-277 61-298 (421)
6 3l76_A Aspartokinase; alloster 100.0 1.8E-46 6.1E-51 371.6 21.8 242 30-277 60-304 (600)
7 1ybd_A Uridylate kinase; alpha 99.9 7.3E-25 2.5E-29 193.4 17.6 160 33-216 71-239 (239)
8 3ek6_A Uridylate kinase; UMPK 99.9 3.8E-24 1.3E-28 189.9 19.9 182 11-216 29-241 (243)
9 2a1f_A Uridylate kinase; PYRH, 99.9 1.2E-24 3.9E-29 193.4 15.8 182 11-216 28-240 (247)
10 2jjx_A Uridylate kinase, UMP k 99.9 2.2E-24 7.5E-29 192.6 17.2 151 43-217 86-247 (255)
11 2j4j_A Uridylate kinase; trans 99.9 1.8E-24 6.1E-29 189.6 16.0 150 32-216 60-225 (226)
12 4a7w_A Uridylate kinase; trans 99.9 5.8E-24 2E-28 188.4 18.5 180 11-214 27-239 (240)
13 1z9d_A Uridylate kinase, UK, U 99.9 1.2E-23 4.1E-28 187.4 16.9 184 11-218 27-242 (252)
14 2ap9_A NAG kinase, acetylgluta 99.9 1.1E-23 3.7E-28 192.2 15.6 169 39-218 100-292 (299)
15 2j5v_A Glutamate 5-kinase; pro 99.9 6.2E-24 2.1E-28 198.9 13.9 170 34-218 70-259 (367)
16 3nwy_A Uridylate kinase; allos 99.9 9.8E-23 3.4E-27 184.2 20.1 181 11-215 69-280 (281)
17 3ll9_A Isopentenyl phosphate k 99.9 5.7E-23 1.9E-27 184.9 14.5 156 49-215 92-266 (269)
18 2ogx_A Molybdenum storage prot 99.9 5E-23 1.7E-27 185.9 13.5 159 33-217 98-272 (276)
19 2brx_A Uridylate kinase; UMP k 99.9 1E-22 3.5E-27 180.7 13.8 150 32-216 80-244 (244)
20 2va1_A Uridylate kinase; UMPK, 99.9 4E-22 1.4E-26 178.0 16.8 181 11-215 44-255 (256)
21 2egx_A Putative acetylglutamat 99.9 4.3E-22 1.5E-26 179.0 16.4 170 34-215 69-269 (269)
22 2ako_A Glutamate 5-kinase; str 99.9 8.1E-23 2.8E-27 181.7 10.2 159 36-207 65-232 (251)
23 3d40_A FOMA protein; fosfomyci 99.9 2E-22 6.7E-27 182.9 10.5 156 38-208 93-259 (286)
24 2ij9_A Uridylate kinase; struc 99.9 1.9E-21 6.7E-26 169.4 14.7 147 32-215 58-219 (219)
25 2rd5_A Acetylglutamate kinase- 99.9 4.3E-21 1.5E-25 174.9 16.8 161 41-216 113-298 (298)
26 1gs5_A Acetylglutamate kinase; 99.9 3E-21 1E-25 172.3 14.0 155 43-215 81-257 (258)
27 2v5h_A Acetylglutamate kinase; 99.9 7.8E-21 2.7E-25 175.0 16.1 170 34-218 117-312 (321)
28 2ogx_B Molybdenum storage prot 99.8 1.6E-20 5.3E-25 169.0 16.1 146 47-216 110-269 (270)
29 2bty_A Acetylglutamate kinase; 99.8 3.3E-20 1.1E-24 167.7 16.0 158 41-217 98-280 (282)
30 3ll5_A Gamma-glutamyl kinase r 99.8 5.6E-20 1.9E-24 163.6 12.6 152 45-214 83-248 (249)
31 2buf_A Acetylglutamate kinase; 99.8 3.5E-19 1.2E-23 162.5 17.7 169 34-217 94-297 (300)
32 3l86_A Acetylglutamate kinase; 99.8 2.2E-19 7.6E-24 162.1 13.3 148 49-216 117-278 (279)
33 1e19_A Carbamate kinase-like c 99.8 1E-18 3.6E-23 160.3 16.7 120 89-216 176-314 (314)
34 3k4o_A Isopentenyl phosphate k 99.8 1.6E-17 5.4E-22 149.2 16.8 153 40-217 94-265 (266)
35 2e9y_A Carbamate kinase; trans 99.7 8.4E-17 2.9E-21 147.7 15.8 120 89-216 176-315 (316)
36 3d2m_A Putative acetylglutamat 99.7 1.3E-16 4.6E-21 152.8 14.2 161 42-218 119-305 (456)
37 3zzh_A Acetylglutamate kinase; 99.7 3.5E-16 1.2E-20 142.9 15.5 166 34-217 114-302 (307)
38 2we5_A Carbamate kinase 1; arg 99.7 2.6E-16 8.8E-21 144.1 12.1 120 89-215 172-309 (310)
39 4ab7_A Protein Arg5,6, mitocho 99.7 3.8E-15 1.3E-19 142.8 18.2 159 42-218 123-303 (464)
40 3kzf_A Carbamate kinase; argin 99.6 2.7E-15 9.3E-20 136.8 12.4 122 90-216 179-316 (317)
41 3s6g_A N-acetylglutamate kinas 99.6 7.4E-15 2.5E-19 140.9 15.3 157 42-217 133-311 (460)
42 3s6k_A Acetylglutamate kinase; 99.5 1.4E-14 4.9E-19 139.0 6.6 166 34-217 127-314 (467)
43 4axs_A Carbamate kinase; oxido 99.3 7.5E-12 2.6E-16 115.3 12.8 119 90-215 194-331 (332)
44 2dtj_A Aspartokinase; protein- 98.7 8.2E-08 2.8E-12 80.6 10.0 96 181-276 26-130 (178)
45 4go7_X Aspartokinase; transfer 98.6 4.7E-08 1.6E-12 83.8 5.7 96 181-276 46-150 (200)
46 4go7_X Aspartokinase; transfer 98.5 4.8E-08 1.6E-12 83.8 4.2 48 228-277 22-69 (200)
47 3mah_A Aspartokinase; aspartat 98.5 6.2E-08 2.1E-12 79.7 4.7 50 228-277 5-54 (157)
48 3s1t_A Aspartokinase; ACT doma 98.5 2.8E-07 9.4E-12 77.8 7.1 97 180-276 26-131 (181)
49 2re1_A Aspartokinase, alpha an 98.3 4.4E-07 1.5E-11 75.3 4.9 95 181-276 36-138 (167)
50 2dt9_A Aspartokinase; protein- 98.3 4.6E-07 1.6E-11 75.1 4.9 95 181-276 27-130 (167)
51 3c1m_A Probable aspartokinase; 98.2 1.4E-06 4.7E-11 83.8 5.0 94 184-277 334-440 (473)
52 3tvi_A Aspartokinase; structur 98.1 1.5E-06 5E-11 83.1 4.9 96 181-277 311-410 (446)
53 2re1_A Aspartokinase, alpha an 98.1 1.7E-06 5.9E-11 71.6 3.9 47 229-277 13-59 (167)
54 3mah_A Aspartokinase; aspartat 98.1 1E-06 3.5E-11 72.3 2.1 90 183-277 33-122 (157)
55 3l76_A Aspartokinase; alloster 98.0 3.7E-06 1.3E-10 83.1 5.0 45 232-276 518-562 (600)
56 2cdq_A Aspartokinase; aspartat 97.9 9E-06 3.1E-10 78.8 5.8 95 181-277 354-455 (510)
57 3ab4_A Aspartokinase; aspartat 97.8 1.6E-05 5.3E-10 75.3 5.0 95 182-276 276-379 (421)
58 2j0w_A Lysine-sensitive aspart 97.4 3.3E-05 1.1E-09 73.8 1.4 44 232-277 377-420 (449)
59 2f06_A Conserved hypothetical 96.5 0.0046 1.6E-07 49.2 6.2 82 186-275 21-104 (144)
60 1zpv_A ACT domain protein; str 89.1 0.53 1.8E-05 33.6 4.7 34 241-277 5-38 (91)
61 3kbq_A Protein TA0487; structu 82.4 5.8 0.0002 32.5 8.2 69 46-140 23-91 (172)
62 2nyi_A Unknown protein; protei 81.9 1.2 4.1E-05 37.0 4.0 35 240-277 92-126 (195)
63 2ko1_A CTR148A, GTP pyrophosph 81.5 1.5 5.1E-05 30.7 3.9 32 242-276 6-37 (88)
64 1zhv_A Hypothetical protein AT 77.2 2.9 9.8E-05 32.9 4.5 43 234-276 55-97 (134)
65 1zvp_A Hypothetical protein VC 75.2 4 0.00014 32.1 4.9 42 235-276 65-106 (133)
66 1u8s_A Glycine cleavage system 73.1 4 0.00014 33.4 4.7 34 241-277 93-126 (192)
67 1mkz_A Molybdenum cofactor bio 64.1 24 0.00084 28.3 7.6 69 46-138 28-96 (172)
68 2fts_A Gephyrin; gephyrin, neu 61.1 31 0.0011 32.0 8.6 73 47-146 209-281 (419)
69 3iwt_A 178AA long hypothetical 58.4 36 0.0012 27.2 7.6 69 46-138 40-108 (178)
70 2fgc_A Acetolactate synthase, 56.9 9.8 0.00033 31.8 3.9 31 243-276 31-61 (193)
71 1y5e_A Molybdenum cofactor bio 56.6 35 0.0012 27.2 7.3 69 46-138 31-99 (169)
72 2pjk_A 178AA long hypothetical 55.1 42 0.0014 27.1 7.5 68 47-138 41-108 (178)
73 2is8_A Molybdopterin biosynthe 50.1 40 0.0014 26.7 6.5 68 47-138 22-89 (164)
74 1g8l_A Molybdopterin biosynthe 46.3 97 0.0033 28.5 9.4 70 47-145 205-274 (411)
75 3ewi_A N-acylneuraminate cytid 44.5 39 0.0013 26.8 5.6 50 143-205 11-61 (168)
76 3pzy_A MOG; ssgcid, seattle st 44.3 82 0.0028 25.0 7.5 66 47-138 28-93 (164)
77 2g2c_A Putative molybdenum cof 43.6 50 0.0017 26.2 6.1 67 47-138 26-96 (167)
78 3mwb_A Prephenate dehydratase; 42.6 1.1E+02 0.0036 27.3 8.7 99 160-275 127-233 (313)
79 1uz5_A MOEA protein, 402AA lon 42.5 77 0.0027 29.1 8.0 70 47-145 208-277 (402)
80 3rfq_A Pterin-4-alpha-carbinol 42.1 75 0.0025 25.9 7.1 78 36-138 32-116 (185)
81 2pbq_A Molybdenum cofactor bio 37.2 1.3E+02 0.0046 23.9 7.9 67 47-138 26-95 (178)
82 1uuy_A CNX1, molybdopterin bio 37.1 1.4E+02 0.0047 23.5 7.8 67 48-138 27-98 (167)
83 1jlj_A Gephyrin; globular alph 36.7 1.4E+02 0.0046 24.3 7.9 68 46-137 34-104 (189)
84 1di6_A MOGA, molybdenum cofact 36.6 1.2E+02 0.0042 24.7 7.7 69 47-137 24-92 (195)
85 2qmx_A Prephenate dehydratase; 36.2 2E+02 0.007 25.0 9.4 107 160-275 120-231 (283)
86 3s5j_B Ribose-phosphate pyroph 33.1 2.1E+02 0.0073 25.4 9.2 94 36-146 97-194 (326)
87 3mtj_A Homoserine dehydrogenas 29.1 33 0.0011 32.1 3.2 26 252-277 367-392 (444)
88 3cpr_A Dihydrodipicolinate syn 25.9 3.2E+02 0.011 23.7 8.9 80 48-146 39-119 (304)
89 1sc6_A PGDH, D-3-phosphoglycer 25.7 48 0.0016 30.5 3.6 33 240-275 330-362 (404)
90 3k5p_A D-3-phosphoglycerate de 24.7 56 0.0019 30.3 3.8 34 239-275 341-374 (416)
91 3l21_A DHDPS, dihydrodipicolin 23.4 3.1E+02 0.011 23.7 8.4 80 48-146 38-118 (304)
92 2wkj_A N-acetylneuraminate lya 23.0 2.6E+02 0.0089 24.2 7.8 80 48-146 34-114 (303)
93 2yxg_A DHDPS, dihydrodipicolin 22.8 2.7E+02 0.0091 23.9 7.8 80 48-146 23-103 (289)
94 2ehh_A DHDPS, dihydrodipicolin 21.5 2.7E+02 0.0091 24.0 7.5 79 48-146 23-103 (294)
95 1xky_A Dihydrodipicolinate syn 21.2 2.5E+02 0.0085 24.3 7.2 80 48-146 35-115 (301)
96 3hjb_A Glucose-6-phosphate iso 21.1 55 0.0019 31.8 3.0 37 117-153 174-214 (574)
97 1ygy_A PGDH, D-3-phosphoglycer 21.0 67 0.0023 30.5 3.7 29 38-68 146-174 (529)
98 3b4u_A Dihydrodipicolinate syn 20.9 3.1E+02 0.011 23.6 7.8 79 48-146 26-106 (294)
99 1o5k_A DHDPS, dihydrodipicolin 20.7 2.5E+02 0.0086 24.4 7.2 80 48-146 35-115 (306)
100 2r8w_A AGR_C_1641P; APC7498, d 20.5 2.5E+02 0.0085 24.8 7.2 79 48-146 57-137 (332)
101 2v9d_A YAGE; dihydrodipicolini 20.5 2.9E+02 0.0099 24.5 7.6 79 48-146 54-134 (343)
102 1f6k_A N-acetylneuraminate lya 20.3 3.3E+02 0.011 23.3 7.9 79 49-146 27-107 (293)
103 3a5f_A Dihydrodipicolinate syn 20.1 2.7E+02 0.0091 24.0 7.2 80 48-146 24-104 (291)
No 1
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=100.00 E-value=2.7e-52 Score=405.58 Aligned_cols=255 Identities=27% Similarity=0.466 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023778 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F 85 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~ 85 (277)
+.++..++.|++++. ++++++.+|+++|+||++|+.+++.+|+++|++|+++++.++.+++++.+++.+++ +
T Consensus 113 ~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~ 192 (510)
T 2cdq_A 113 SVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY 192 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHH
Confidence 456677777777653 47889999999999999999999999999999999999999955666667665543 2
Q ss_pred hHHHHHHHH-HhhcCCCceEEecCccccCC-CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778 86 SESEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV 163 (277)
Q Consensus 86 ~~~~~~i~~-~l~~~~~~VpVv~G~i~~~~-~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~ 163 (277)
....+.+.+ +++ .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+++++||||||||++|||.+|+|+
T Consensus 193 ~~~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~ 270 (510)
T 2cdq_A 193 PAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRAT 270 (510)
T ss_dssp HHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCC
T ss_pred HHHHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCE
Confidence 223455554 556 789999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeE
Q 023778 164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLAL 243 (277)
Q Consensus 164 ~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~ 243 (277)
+|++++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+.... ..+.+++|+.++|+++
T Consensus 271 ~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~-------~~~~v~gIa~~~~~~~ 343 (510)
T 2cdq_A 271 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDM-------TKSILTSIVLKRNVTM 343 (510)
T ss_dssp BCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC-------TTCCEEEEEEEEEEEE
T ss_pred EecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccc-------cccccccccccCCeEE
Confidence 999999999999999999999999999999999999999999999999999875421 2347999999999999
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
|+|.|.+|.+.+||++++|+.|+++||+|+||+|
T Consensus 344 I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s 377 (510)
T 2cdq_A 344 LDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510)
T ss_dssp EEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence 9999999999999999999999999999999975
No 2
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=100.00 E-value=4.4e-51 Score=394.88 Aligned_cols=254 Identities=40% Similarity=0.576 Sum_probs=233.7
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023778 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (277)
Q Consensus 15 ~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~ 89 (277)
.++..++.|++++. ++++++..|+++|+||++|+++++.+|+++|++|+++++.++.++++++++..++++..+.
T Consensus 96 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~t~~~~~~~~~~~~~~~ 175 (473)
T 3c1m_A 96 IIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVK 175 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEEECSCTTSCCEEEECHH
T ss_pred HHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEEEccCCCCccccHhhhH
Confidence 57777777777654 4789999999999999999999999999999999999999996667667776666555677
Q ss_pred HHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC
Q 023778 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS 169 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is 169 (277)
+.++++++ .+.|||++||+|.+++|.++|+||||+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++
T Consensus 176 ~~i~~ll~--~g~ipVv~G~~g~~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is 253 (473)
T 3c1m_A 176 ERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLS 253 (473)
T ss_dssp HHHHHHHH--TTCEEEEESSEEEETTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEE
T ss_pred HHHHHHHh--CCcEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccC
Confidence 89999987 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecC
Q 023778 170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGT 249 (277)
Q Consensus 170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~ 249 (277)
|+|+.+|+++|+++|||+|+.+|.++|+|++|+|+++|+.+||+|.+.... ..+.+++|+.++|+++|+|+|.
T Consensus 254 ~~e~~~l~~~g~~~m~~~a~~~a~~~gi~v~I~~~~~~~~~GT~i~~~~~~-------~~~~v~gIa~~~~~a~Isv~g~ 326 (473)
T 3c1m_A 254 YIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDMEM-------SDSIVKAISTIKNVALINIFGA 326 (473)
T ss_dssp HHHHHHHHHTTCTTSCGGGHHHHHHHTCCEEEEETTSTTSCCEEEESCCCC-------CTTSCCEEEEEEEEEEEEEEEC
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHcCCEEEEEecCCCCCceEEEeccccc-------cccccchhhccCCeEEEEEecC
Confidence 999999999999999999999999999999999999999999999875421 3457999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 250 GMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 250 gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|.+.||+++++|++|+++||+|+||+|
T Consensus 327 ~m~~~~G~~a~if~~La~~~InV~~IsQ 354 (473)
T 3c1m_A 327 GMVGVSGTAARIFKALGEEEVNVILISQ 354 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCcCHHHHHHHHHHHcCCcEEEEEe
Confidence 9999999999999999999999999986
No 3
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=100.00 E-value=1.3e-50 Score=388.10 Aligned_cols=228 Identities=28% Similarity=0.427 Sum_probs=205.4
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (277)
Q Consensus 34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~ 113 (277)
+..|+++|+||+||+++++.+| ++.++++++++++++ +. ..+++.+.++++++++ .+.|||++||+|.+
T Consensus 107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~ 175 (446)
T 3tvi_A 107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK---SG-CFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS 175 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC---CC-ceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence 6789999999999999999996 599999999987765 22 3566778899999997 78999999999999
Q ss_pred CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHH
Q 023778 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193 (277)
Q Consensus 114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~ 193 (277)
++|.++|+||||||++|+++|.+|+|+++++||||||||++|||++|+|++|++++|+|+.+|+++|+++|||+|+++|+
T Consensus 176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~ 255 (446)
T 3tvi_A 176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK 255 (446)
T ss_dssp TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEE
Q 023778 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273 (277)
Q Consensus 194 ~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~ 273 (277)
++|||++|+|+++|+.+||+|.+....+. ..+.+++|+.++|+++|+|.|.+|.+.||+++++|+.|++++|+|+
T Consensus 256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~-----~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd 330 (446)
T 3tvi_A 256 DSGIPINIKNTNKPSDPGTLILSDTHKEI-----NLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFE 330 (446)
T ss_dssp HSSCCEEEEETTBTTSCCEEEECTTTSCC-----CTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEE
T ss_pred HcCCeEEEecCCCCCCCCEEEecCCcccc-----cCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEE
Confidence 99999999999999999999987653210 1137899999999999999999999999999999999999999999
Q ss_pred EEeC
Q 023778 274 MISQ 277 (277)
Q Consensus 274 ~isq 277 (277)
||+|
T Consensus 331 ~i~~ 334 (446)
T 3tvi_A 331 HMPS 334 (446)
T ss_dssp EBCE
T ss_pred EEec
Confidence 9874
No 4
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=100.00 E-value=1.6e-50 Score=388.46 Aligned_cols=251 Identities=30% Similarity=0.523 Sum_probs=220.3
Q ss_pred HHHHHHHHHHhhh---cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHH
Q 023778 15 FIRSTYNFLSNVD---SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91 (277)
Q Consensus 15 ~i~~~~~~L~~~~---~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~ 91 (277)
.++..++.|+.+. .-..+++.+|+++|+||.+|+.+++.+|+++|++++++++.++ +.+++.|++.+++...+.+.
T Consensus 87 ~i~~~~~~l~~l~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~ 165 (449)
T 2j0w_A 87 EIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAEL 165 (449)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHH
Confidence 3455555553221 1133589999999999999999999999999999999999999 55666777766765443333
Q ss_pred ----HHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEee
Q 023778 92 ----LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167 (277)
Q Consensus 92 ----i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~ 167 (277)
++.+++ +.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++|||.+|+|++|++
T Consensus 166 ~~~~l~~l~~---~~IpVv~Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~ 242 (449)
T 2j0w_A 166 AALQLLPRLN---EGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDE 242 (449)
T ss_dssp HHHHTHHHHH---HSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESE
T ss_pred HHHHHHHHhc---CCEEEEeCCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccC
Confidence 333333 3499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEe
Q 023778 168 LSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247 (277)
Q Consensus 168 is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvv 247 (277)
++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+... ..+.+++|+.++|+++|+|.
T Consensus 243 is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~--------~~~~v~gIa~~~~~~~i~i~ 314 (449)
T 2j0w_A 243 IAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE--------NPPLFRALALRRNQTLLTLH 314 (449)
T ss_dssp EEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS--------SCCSEEEEEEEEEEEEEEEC
T ss_pred ccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc--------cccccccceeeCCEEEEEEE
Confidence 9999999999999999999999999999999999999999999999987642 23579999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 248 GTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 248 g~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
|.+|.+.+|+++++|+.|++++|+|+||+|
T Consensus 315 ~~~m~~~~g~~~~if~~l~~~~i~vd~i~s 344 (449)
T 2j0w_A 315 SLNMLHSRGFLAEVFGILARHNISVDLITT 344 (449)
T ss_dssp CCSCSCHHHHHHHHTTTTTTTTCCCSEEEE
T ss_pred ecCCCCccCHHHHHHHHHHHcCCCEEEEEe
Confidence 999999999999999999999999999975
No 5
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=100.00 E-value=5.2e-46 Score=354.76 Aligned_cols=237 Identities=27% Similarity=0.402 Sum_probs=185.6
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.+++..|.++++||.+++.+++.+|+++|+++.++++.++.+++++.++..++.. ...+.++++++ .+.|||++||+
T Consensus 61 ~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~-~~~~~i~~~l~--~g~ipVv~g~~ 137 (421)
T 3ab4_A 61 PPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVD-VTPGRVREALD--EGKICIVAGFQ 137 (421)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC------------------CCHHHHHHHHH--TTCEEEC----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeech-hhHHHHHHHHh--CCCEEEEeCCc
Confidence 4578899999999999999999999999999999999998666665555433321 12378888888 88999999999
Q ss_pred ccCCC-CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023778 111 ASTPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (277)
Q Consensus 111 ~~~~~-G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~ 189 (277)
|.+++ |+++|+||||||++|+++|.+|+|++++|||||||||++||+.+|++++|++++|+|+.+|+++|++++||+|+
T Consensus 138 g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~ 217 (421)
T 3ab4_A 138 GVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSV 217 (421)
T ss_dssp --------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHH
T ss_pred CcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCC
Q 023778 190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG 269 (277)
Q Consensus 190 ~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~ 269 (277)
.+|.++|||++|+|+++| .+||+|.+...+. ....+.+++++.++|+++|+|.| |.+.||+++++|+.|+++|
T Consensus 218 ~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~----~~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~~ 290 (421)
T 3ab4_A 218 EYARAFNVPLRVRSSYSN-DPGTLIAGSMEDI----PVEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAE 290 (421)
T ss_dssp HHHHHTTCCEEEEESSSC-CCCEEECSCGGGS----CTTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTT
T ss_pred HHHHHcCCCEEEecCcCC-CCCeEEEecCccc----ccccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHcC
Confidence 999999999999999998 7999998751100 00235699999999999999998 7789999999999999999
Q ss_pred CcEEEEeC
Q 023778 270 ANVIMISQ 277 (277)
Q Consensus 270 I~V~~isq 277 (277)
|+|+||+|
T Consensus 291 I~vd~I~q 298 (421)
T 3ab4_A 291 INIDMVLQ 298 (421)
T ss_dssp CCCEEEEE
T ss_pred CcEEEEEc
Confidence 99999986
No 6
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=100.00 E-value=1.8e-46 Score=371.61 Aligned_cols=242 Identities=27% Similarity=0.403 Sum_probs=206.3
Q ss_pred CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023778 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (277)
Q Consensus 30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~ 109 (277)
..+++..|+++++||++|+.+++.+|+++|+++++++++++.+++++.+++.++.. ...+.++++++ .+.|||++||
T Consensus 60 ~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~i~~ll~--~g~IpVv~Gf 136 (600)
T 3l76_A 60 NPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILE-IRPDRLEHHLR--EGKVVVVAGF 136 (600)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCE-EEECCHHHHHT--TTCEEEEECE
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceecc-ccHHHHHHHHh--CCCEEEEECC
Confidence 34678889999999999999999999999999999999999877776665544332 11266888887 7899999999
Q ss_pred cccCCCC--CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778 110 IASTPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 110 i~~~~~G--~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
+|.+++| +++++||||||++|+++|.+|+|+++++||||||||++|||++|+|++|++++|+|+.+|+++|+++|||+
T Consensus 137 ~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~ 216 (600)
T 3l76_A 137 QGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPR 216 (600)
T ss_dssp EEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHH
T ss_pred eecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHH
Confidence 9999999 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC-CcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHH
Q 023778 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266 (277)
Q Consensus 188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~-~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~ 266 (277)
|+++|.++|||++|+|+++ +.+||+|.+..... ........+.+++|+.++|+++|++. +|.+.||+++++|+.|+
T Consensus 217 a~~~a~~~gipv~I~n~~~-~~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La 293 (600)
T 3l76_A 217 AVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIA 293 (600)
T ss_dssp HHHHHHHHTCCEEEEETTC-CSCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEE--EEECSTTHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEECCC-CCCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEe--CCCCcccHHHHHHHHHH
Confidence 9999999999999999998 47999998765310 00000134679999999999999998 68899999999999999
Q ss_pred hCCCcEEEEeC
Q 023778 267 DVGANVIMISQ 277 (277)
Q Consensus 267 ~~~I~V~~isq 277 (277)
+++|+|+||+|
T Consensus 294 ~~~I~Vd~I~q 304 (600)
T 3l76_A 294 QQQVDIDLIIQ 304 (600)
T ss_dssp HTTCCCCCEEB
T ss_pred HcCCCEEEEEe
Confidence 99999999987
No 7
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=99.93 E-value=7.3e-25 Score=193.41 Aligned_cols=160 Identities=19% Similarity=0.240 Sum_probs=132.1
Q ss_pred hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
++..+.+.+.|+.++++++.++|.+.|+++.++++.+...+++ .+ .+ .+.+ ++++ .+.|||++|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~-~~----~~----~~~~-~ll~--~g~ipVv~g~~g- 137 (239)
T 1ybd_A 71 RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE-TY----AR----PKAI-QYLE--EGKVVIFAAGTG- 137 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE-EC----CH----HHHH-HHHH--TTCEEEEESTTS-
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc-ch----hH----HHHH-HHHh--CCcEEEEECCcc-
Confidence 3445667778999999999999999999999998877643321 11 11 1334 6777 889999987632
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHH
Q 023778 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV 192 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a 192 (277)
. .++++|++|+++|.+|+|++++|||||||||++||+.+|+|++|++++++|+.++ |.++|||+++.+|
T Consensus 138 ----~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a 206 (239)
T 1ybd_A 138 ----N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALC 206 (239)
T ss_dssp ----S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHH
T ss_pred ----C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHH
Confidence 1 1357899999999999999999999999999999999999999999999999875 7899999999999
Q ss_pred HhCCCcEEEEeccCCC---------CCeeEEeC
Q 023778 193 MRYDIPIVIRNIFNLS---------VPGIMICR 216 (277)
Q Consensus 193 ~~~~i~v~I~n~~~~~---------~~GT~I~~ 216 (277)
.++|+|++|.|+++|+ ..||+|.+
T Consensus 207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 9999999999998763 56998864
No 8
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=99.92 E-value=3.8e-24 Score=189.91 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=144.5
Q ss_pred ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778 11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~---------~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
++.++++...+++.++.+ | . .+....|.+-.....+++.++..+|.+.|++++.+++.
T Consensus 29 ~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~ 108 (243)
T 3ek6_A 29 IDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI 108 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence 567788777777766542 1 1 12233444433455788888999999999999999998
Q ss_pred cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (277)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV 148 (277)
++..+++ ..+ .+.+.++++ .|.|||++|+. |.. ++++|++|+++|.+|+|+++++||||
T Consensus 109 ~~~~v~~------~~~----~~~~~~lL~--~g~IpVv~~~~-----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdV 167 (243)
T 3ek6_A 109 KINDVCE------DFI----RRRAIRHLE--KGRIAIFAAGT-----GNP----FFTTDSGAALRAIEIGADLLLKATKV 167 (243)
T ss_dssp CBTTTBE------ECC----HHHHHHHHH--TTCEEEEESTT-----SST----TCCHHHHHHHHHHHHTCSEEEEECSS
T ss_pred hcCcccC------cCC----HHHHHHHHH--CCcEEEEECCC-----CCC----cCChHHHHHHHHHHcCCCEEEEEeCC
Confidence 7643321 122 367888888 89999999842 221 25689999999999999999999999
Q ss_pred ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (277)
Q Consensus 149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~ 216 (277)
||||++||+++|+|+++++++++|+.+ .|.++|+++|+..|.++|+|++|+|+++| +..||+|.+
T Consensus 168 dGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 168 DGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999876 37889999999999999999999999765 357999976
No 9
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=99.92 E-value=1.2e-24 Score=193.40 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=139.4
Q ss_pred ccHHHHHHHHHHHHhhh---------cC-------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778 11 LSYEFIRSTYNFLSNVD---------SG-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~---------~~-------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
++.+.++...+++..+. +| ..+++..|.+.+.|+.+++++++++|.+.|+++.++++.
T Consensus 28 ~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~ 107 (247)
T 2a1f_A 28 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF 107 (247)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc
Confidence 46677777777766543 21 134445677788999999999999999999999999987
Q ss_pred cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (277)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV 148 (277)
+...+++ . + ....++++++ .+.|||++|+. |. .++++|++|+.+|.+|+|++++|||||
T Consensus 108 ~~~~~~~-~-------~--~~~~~~~ll~--~g~ipVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 108 QLNGICD-T-------Y--NWSEAIKMLR--EKRVVIFSAGT-----GN----PFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp CCTTTSE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccc-h-------h--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 7643221 1 1 1234577887 88999999842 22 235789999999999999999999999
Q ss_pred ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (277)
Q Consensus 149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~ 216 (277)
||||++||+++|++++|++++++|+.++ |.++|+|+++.+|.++|+|++|.|+++| +..||+|..
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~ 240 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence 9999999999999999999999999875 7899999999999999999999999765 357999964
No 10
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=99.92 E-value=2.2e-24 Score=192.59 Aligned_cols=151 Identities=18% Similarity=0.293 Sum_probs=126.7
Q ss_pred cHHHHHHHHHHHHHH-CCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceec
Q 023778 43 GELWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~-~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~l 121 (277)
+..+++.+++.+|.+ .|+++.++++.++..+++ ..+ ...+.++++ .+.|||++| + ++++.++
T Consensus 86 ~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~----~~~~~~lL~--~g~IpVi~g--g-~g~~~vt-- 148 (255)
T 2jjx_A 86 GTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYI----RLRAVHHLD--NGYIVIFGG--G-NGQPFVT-- 148 (255)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECC----HHHHHHHHH--TTCEEEEES--T-TSCSSCC--
T ss_pred HHHHHHHHHHHHHHhhcCCceEEecHHHcCcccC------ccc----HHHHHHHHh--CCcEEEEeC--C-CCCCccc--
Confidence 346888889999999 999999999988753332 112 234447887 889999998 3 3333333
Q ss_pred cCCCchHHHHHHHHHhCcceEEEee-ccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEE
Q 023778 122 KRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200 (277)
Q Consensus 122 grggsD~~A~~lA~~l~A~~l~i~t-DV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~ 200 (277)
+|++|+.+|.+|+|++++||| ||||||++||+++|++++|++++|+|+.++ |.++|+|.|++++.++|+|++
T Consensus 149 ----tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~ 221 (255)
T 2jjx_A 149 ----TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAH 221 (255)
T ss_dssp ----SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEE
T ss_pred ----hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEE
Confidence 499999999999999999999 999999999999999999999999998875 889999999999999999999
Q ss_pred EEeccCCC---------CCeeEEeCC
Q 023778 201 IRNIFNLS---------VPGIMICRP 217 (277)
Q Consensus 201 I~n~~~~~---------~~GT~I~~~ 217 (277)
|+|+++|+ ..||+|.++
T Consensus 222 I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 222 VFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp EEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred EEeCCCchHHHHHhcCCCCceEEecC
Confidence 99998873 689999874
No 11
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.92 E-value=1.8e-24 Score=189.62 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=125.8
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
++...+.+.+.|+.+++.+++.+|+++|+++ + ..+ .++++++++ .+.|||++| +
T Consensus 60 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~-----------~-------~~~----~~~i~~ll~--~g~ipVi~g--g 113 (226)
T 2j4j_A 60 GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH-----------V-------PQS----LEEFIQDWS--HGKVVVTGG--F 113 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC-----------C-------CSS----HHHHHHHHT--TSSBEEECC--C
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------C-------cCC----HHHHHHHHH--CCCEEEEcC--C
Confidence 3456778889999999999999999999964 0 123 377888887 889999998 2
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cCC------cc
Q 023778 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VL 184 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~~------v~ 184 (277)
.. .+++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |.+ ++
T Consensus 114 -~~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~ 184 (226)
T 2j4j_A 114 -QP--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELL 184 (226)
T ss_dssp -ST--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCS
T ss_pred -CC--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccc
Confidence 11 356899999999999999999999999999999999999999999999999999543 555 88
Q ss_pred hHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778 185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (277)
Q Consensus 185 ~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~ 216 (277)
|++++.+|.++|+|++|.|+++| +..||+|.+
T Consensus 185 k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 185 DPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp CHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred hHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 99999999999999999998765 357999975
No 12
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=99.92 E-value=5.8e-24 Score=188.38 Aligned_cols=180 Identities=18% Similarity=0.223 Sum_probs=141.1
Q ss_pred ccHHHHHHHHHHHHhhhc---------C--C------------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023778 11 LSYEFIRSTYNFLSNVDS---------G--H------------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT 67 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~---------~--~------------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~ 67 (277)
++.++++...+++.++.+ | . .+....|.+-.....+++.+++++|.++|++++.+++
T Consensus 27 ~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~ 106 (240)
T 4a7w_A 27 IDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSA 106 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecH
Confidence 567777777777765542 1 0 1111223332234678899999999999999999998
Q ss_pred ccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec
Q 023778 68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (277)
Q Consensus 68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD 147 (277)
.++...+. ..+ .+.+.++++ .+.|||++|+. |.. .+++|++|+++|.+|+|+++++|||
T Consensus 107 ~d~~~~~~------~~~----~~~i~~lL~--~g~ipVi~~~~-----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTd 165 (240)
T 4a7w_A 107 IEIKEICE------SYI----YRKAIRHLE--KGRVVIFGAGT-----GNP----FFTTDTAATLRAIEIGSDLIIKATK 165 (240)
T ss_dssp SCCTTTSE------ECC----HHHHHHHHH--TTCEEEEESTT-----SCT----TSCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHcCcccC------cCc----HHHHHHHHH--CCCEEEEeCCC-----CCC----CCChHHHHHHHHHHcCCCEEEEccC
Confidence 88743221 122 367788888 89999999852 221 1357999999999999999999999
Q ss_pred cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC----------CCeeEE
Q 023778 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS----------VPGIMI 214 (277)
Q Consensus 148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~----------~~GT~I 214 (277)
|||||++||+.+|+|+++++++++|+.++ |.++|+++|+.+|.++|+|++|+|+++|+ ..||.|
T Consensus 166 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 166 VDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred CCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 99999999999999999999999998774 78999999999999999999999998763 468887
No 13
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=99.91 E-value=1.2e-23 Score=187.40 Aligned_cols=184 Identities=20% Similarity=0.248 Sum_probs=145.5
Q ss_pred ccHHHHHHHHHHHHhhh---------cC--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778 11 LSYEFIRSTYNFLSNVD---------SG--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~---------~~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
++.+.++...++|..+. +| . .+++..+.+.+.++.++++++..+|.+.|+++..+++.
T Consensus 27 ~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~ 106 (252)
T 1z9d_A 27 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI 106 (252)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence 45677777777776553 21 1 23333455566778889999999999999999999887
Q ss_pred cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEee-c
Q 023778 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-D 147 (277)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t-D 147 (277)
+...+.+ .+ ....+.++++ .+.|||++|+. |. .++++|++|+.+|.+|+|++++||| |
T Consensus 107 ~~~~~~~-~~---------~~~~~~~lL~--~g~IpVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~D 165 (252)
T 1z9d_A 107 PMQNVAE-PY---------IRGRALRHLE--KNRIVVFGAGI-----GS----PYFSTDTTAALRAAEIEADAILMAKNG 165 (252)
T ss_dssp CBTTTBE-EC---------CHHHHHHHHH--TTCEEEEESTT-----SC----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccC-cc---------hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCChHHHHHHHHHhcCCCEEEEecCC
Confidence 6532221 11 1234477887 88999999832 22 2567999999999999999999999 9
Q ss_pred cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (277)
Q Consensus 148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~ 218 (277)
|||||++||+++|++++|++++++|+.+ .|.++|+++++..|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 166 VDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp CCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred CCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 9999999999999999999999999876 477899999999999999999999998774 6899998764
No 14
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.91 E-value=1.1e-23 Score=192.21 Aligned_cols=169 Identities=14% Similarity=0.200 Sum_probs=137.0
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC-c---CCCc-------hHHHHHHHHHhhcCCCceEEec
Q 023778 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-V---DPDF-------SESEKRLEKWFSQSPSNTIIAT 107 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~---~~~~-------~~~~~~i~~~l~~~~~~VpVv~ 107 (277)
.++.|+. + ..+++.|.+.|++++++++.+..+++...++. . .+++ ....+.++++++ .+.|||++
T Consensus 100 ~~~~G~l-~-~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~--~g~IpVv~ 175 (299)
T 2ap9_A 100 MVLFGQV-G-RELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVA--AGRIPVVS 175 (299)
T ss_dssp HHHHHTH-H-HHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHH--TTCEEEEE
T ss_pred HHHhhHH-H-HHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHh--CCCeEEEC
Confidence 3447884 3 34899999999999999998864443222210 0 0110 012478889998 89999999
Q ss_pred CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
|+ +.++.|+.+++ ++|++|+.+|.+|+|++++|||||||||++||+ ++++|++++++|+.+++.++.++|+|+
T Consensus 176 ~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~K 248 (299)
T 2ap9_A 176 TL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPK 248 (299)
T ss_dssp SE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHH
T ss_pred Ce-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHH
Confidence 97 88899998887 599999999999999999999999999999998 579999999999999998889999996
Q ss_pred --HHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCCC
Q 023778 188 --TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRPP 218 (277)
Q Consensus 188 --a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~~ 218 (277)
++..+.++|+| ++|.|+++|+ ..||+|.+..
T Consensus 249 l~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~ 292 (299)
T 2ap9_A 249 VEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGE 292 (299)
T ss_dssp HHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCC
Confidence 78889999999 9999997663 4699998753
No 15
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.91 E-value=6.2e-24 Score=198.91 Aligned_cols=170 Identities=16% Similarity=0.215 Sum_probs=105.3
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023778 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (277)
Q Consensus 34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~ 113 (277)
...+.+.+.|+..+++.+...|.++|+++.. +.+ +.+.+.. ...+....+.++++++ .+.|||+.+.
T Consensus 70 ~~~qa~aavGq~~l~~~~~~~l~~~G~~~~q-----vll-t~~d~~~-~~r~~n~~~~i~~LL~--~g~IPIv~en---- 136 (367)
T 2j5v_A 70 ASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQ-----MLL-TRADMED-RERFLNARDTLRALLD--NNVVPVINEN---- 136 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEE-----EEE-CGGGGSS-HHHHHHHHHHHHHHHH--TTCEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCceEE-----EEE-ecccccC-ceEEEhHHHHHHHHHH--CCCEEEECCC----
Confidence 3566677899999999999999999999863 333 3222321 1222333467888888 8999999632
Q ss_pred CCCCcee--ccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcc
Q 023778 114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL 184 (277)
Q Consensus 114 ~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~ 184 (277)
+.+.+ +.+|++|++|+++|.+++|+.++|||||||||++||+++|++++|+++++ +|+.+++. +|.++|
T Consensus 137 --d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM 214 (367)
T 2j5v_A 137 --DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGM 214 (367)
T ss_dssp --TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------C
T ss_pred --CceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCcc
Confidence 23333 56889999999999999999999999999999999999999999999999 89999865 477899
Q ss_pred hH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023778 185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (277)
Q Consensus 185 ~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~ 218 (277)
+| +|+..|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 215 ~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~ 259 (367)
T 2j5v_A 215 STKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA 259 (367)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCc
Confidence 99 6889999999999999998875 6899998754
No 16
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=99.90 E-value=9.8e-23 Score=184.25 Aligned_cols=181 Identities=20% Similarity=0.262 Sum_probs=138.7
Q ss_pred ccHHHHHHHHHHHHhhhc-----------C-----------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778 11 LSYEFIRSTYNFLSNVDS-----------G-----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~-----------~-----------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
++.++++...+++.++.+ | ..+....|.+-..++.+++.++.+.|.++|++++.+.+.
T Consensus 69 ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~ 148 (281)
T 3nwy_A 69 LDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 148 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 677788777777766542 1 122334566667788999999999999999999888777
Q ss_pred cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023778 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (277)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV 148 (277)
+...+++ .| .+ .+.+ ++++ .+.|||++|+. |.. ++++|++|+++|.+|+|+.+++||||
T Consensus 149 ~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~~-----g~~----~~~~D~~Aa~lA~~l~Ad~LiilTDV 207 (281)
T 3nwy_A 149 TMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAGM-----GLP----YFSTDTTAAQRALEIGADVVLMAKAV 207 (281)
T ss_dssp CCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEESTT-----SST----TCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred ccccccc-cc----ch----HHHH-HHHH--cCCeEEEECCC-----CCC----CCCHHHHHHHHHHHcCCCEEEEeecc
Confidence 6544332 11 11 2334 7787 89999999842 221 35789999999999999999999999
Q ss_pred ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
||||++||+++|+|++|++++++|+.+ .|..+++++|+..|.++|+|++|+|+++| +..||+|.
T Consensus 208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999854 47889999999999999999999999876 35799885
No 17
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.89 E-value=5.7e-23 Score=184.91 Aligned_cols=156 Identities=16% Similarity=0.168 Sum_probs=120.9
Q ss_pred HHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC--CCceeccCCCc
Q 023778 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGS 126 (277)
Q Consensus 49 ~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~--G~~~~lgrggs 126 (277)
..++++|.++|++++.+++.+..+++.+.. ..++. +.++++++ .+.|||++||++.+.+ |++.++ ++
T Consensus 92 ~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~ 160 (269)
T 3ll9_A 92 SHVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SG 160 (269)
T ss_dssp HHHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CH
T ss_pred HHHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---ch
Confidence 358999999999999999999866553211 23444 78899998 8999999999998888 888776 48
Q ss_pred hHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh-----hcCCcchHH--HHHHHHhCCCcE
Q 023778 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPI 199 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~~p~--a~~~a~~~~i~v 199 (277)
|++|+.+|.+|+|+++++||||||||++||+.+|++++|+++++.|+.++.. .+..+|.|+ ++..+.++|+++
T Consensus 161 D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v 240 (269)
T 3ll9_A 161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVES 240 (269)
T ss_dssp HHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeE
Confidence 9999999999999999999999999999999999999999999999977643 345688885 567777899999
Q ss_pred EEEeccCC---------CCC-eeEEe
Q 023778 200 VIRNIFNL---------SVP-GIMIC 215 (277)
Q Consensus 200 ~I~n~~~~---------~~~-GT~I~ 215 (277)
+|.|++.| +.. ||+|.
T Consensus 241 ~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 241 EIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp EEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred EEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 99998766 345 99886
No 18
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.89 E-value=5e-23 Score=185.94 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=126.6
Q ss_pred hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023778 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
+...+.+...++.++..+++..+...|++++. +....+.++++++ .+.|||++||++.
T Consensus 98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~--------------------~~~~~~~i~~lL~--~g~IpVi~~~~~~ 155 (276)
T 2ogx_A 98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVE--------------------HPTVADQLAIHLS--ATRAVVGSAFPPY 155 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCC--------------------HHHHHHHHHHHHH--HSSEEEEESSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--------------------ccChHHHHHHHHh--CCCEEEEcCCccc
Confidence 34455555666777777777776667765321 1123467888888 7899999998776
Q ss_pred CC--C-CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCC--CCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023778 113 TP--D-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 113 ~~--~-G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~--~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
+. . |.. +.++++|++|+.+|.+|+|++++|||||||||++||+ .+|++++|++++++|+.+++ |.++|+|+
T Consensus 156 ~~~e~~G~~--~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K 231 (276)
T 2ogx_A 156 HHHEFPGSR--IPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--GPLPVDRA 231 (276)
T ss_dssp GGGCCSSSS--SCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--SCCSSCHH
T ss_pred ccccccCCc--CCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--CcCChHHH
Confidence 62 2 222 2346799999999999999999999999999999999 89999999999999999887 78999999
Q ss_pred HHHHHH--hCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778 188 TIIPVM--RYDIPIVIRNIFNL---------SVPGIMICRP 217 (277)
Q Consensus 188 a~~~a~--~~~i~v~I~n~~~~---------~~~GT~I~~~ 217 (277)
+...+. +++++++|.|+++| +..||+|.+.
T Consensus 232 ~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 232 LLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp HHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred HHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 988888 55889999999877 5689999864
No 19
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.89 E-value=1e-22 Score=180.72 Aligned_cols=150 Identities=24% Similarity=0.269 Sum_probs=124.1
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
++...+.+.+.|+.+++.++...|.+.|+++ + .++ .+.+.++++ .+.|||++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~------------~~~----~~~i~~lL~--~g~IpVi~g--- 132 (244)
T 2brx_A 80 SETFKDFIGIQITRANAMLLIAALREKAYPV------V------------VED----FWEAWKAVQ--LKKIPVMGG--- 132 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C------------BCS----HHHHHHHHH--TTCBCEECC---
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C------------cCC----HHHHHHHHh--CCCEEEEcC---
Confidence 4456677788899999999999999999754 0 123 266788888 899999998
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cC-----Ccch
Q 023778 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH 185 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~ 185 (277)
|.. .+++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |. .+++
T Consensus 133 ----g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~ 204 (244)
T 2brx_A 133 ----THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVID 204 (244)
T ss_dssp ----CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSC
T ss_pred ----CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchH
Confidence 221 246799999999999999999999999999999999999999999999999998543 43 7889
Q ss_pred HHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeC
Q 023778 186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR 216 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~ 216 (277)
+.|++.+.+.++|++|.|+++| +..||+|.+
T Consensus 205 ~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 205 PLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred HHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 9999999999999999998654 357999853
No 20
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=99.88 E-value=4e-22 Score=178.05 Aligned_cols=181 Identities=14% Similarity=0.168 Sum_probs=130.0
Q ss_pred ccHHHHHHHHHHHHhhh--------cC--C-----------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcccc
Q 023778 11 LSYEFIRSTYNFLSNVD--------SG--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~--------~~--~-----------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~ 69 (277)
++.+.++...++|..+. +| . .++...+..-..+..+++.++.++|.+.|+++..+....
T Consensus 44 ~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t 123 (256)
T 2va1_A 44 IDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIK 123 (256)
T ss_dssp SCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccchHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeee
Confidence 45677777777776642 21 1 112223333344557778888999999999999887654
Q ss_pred ceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec-c
Q 023778 70 VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-V 148 (277)
Q Consensus 70 ~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD-V 148 (277)
.. .+.+.. ....+.++++ .+.|||++|. .|. .++++|++|+.+|.+|+|++++|||| |
T Consensus 124 ~~-----~~~~~~-----~~~~~~~lL~--~g~IpVi~~~-----~g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~V 182 (256)
T 2va1_A 124 CD-----KLVHES-----SANNIKKAIE--KEQVMIFVAG-----TGF----PYFTTDSCAAIRAAETESSIILMGKNGV 182 (256)
T ss_dssp CT-----TTCEEC-----CHHHHHHHHH--TTCEEEEEST-----TSS----SSCCHHHHHHHHHHHHTCSEEEEEESSC
T ss_pred cc-----cccchh-----hHHHHHHHHh--CCcEEEEECC-----CCC----CCCChhHHHHHHHHhCCCCEEEEeeccc
Confidence 32 221111 1233467887 8999999982 232 24678999999999999999999999 9
Q ss_pred ccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 149 ~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
||||++||+++|++++|++++++|+.++ +.++|+++|+..|.++|+|++|.|+++| +..||+|.
T Consensus 183 dGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 183 DGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp CSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred CeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 9999999999999999999999999887 4678899999999999999999999766 35799885
No 21
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.88 E-value=4.3e-22 Score=179.04 Aligned_cols=170 Identities=12% Similarity=0.111 Sum_probs=131.6
Q ss_pred hHHHHHhhh--cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC----------------CC-cCCCchHHHHHHHH
Q 023778 34 SFTDFVVGH--GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------------NQ-VDPDFSESEKRLEK 94 (277)
Q Consensus 34 ~~~~~v~s~--Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------------g~-~~~~~~~~~~~i~~ 94 (277)
...+.+.+. |+. ...+++.|.++|+++..+++.+..+++.... +. .++.. ...+.+++
T Consensus 69 ~~l~~~~~~~~G~i--~~~l~~~l~~~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~-v~~~~i~~ 145 (269)
T 2egx_A 69 KTLEIFEMVYCGLV--NKRLVELLQKEGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEE-VNKALLDL 145 (269)
T ss_dssp HHHHHHHHHHHTHH--HHHHHHHHHHTTCCEEEEETTGGGCEEECBC----------------CCEECCCE-ECHHHHHH
T ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHCCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceE-ECHHHHHH
Confidence 445556555 666 7899999999999999999988543332221 11 11121 12478888
Q ss_pred HhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHH
Q 023778 95 WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW 174 (277)
Q Consensus 95 ~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~ 174 (277)
+++ .+.|||+++ ++.+++|++.+ +++|++|+.+|.+|+|++++|||||||||+ ||+ |+++++++++++|+.
T Consensus 146 ll~--~g~ipVi~~-v~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp~--~~a~~i~~i~~~e~~ 216 (269)
T 2egx_A 146 LLQ--AGYLPVLTP-PALSYENEAIN---TDGDQIAALLATLYGAEALVYLSNVPGLLA-RYP--DEASLVREIPVERIE 216 (269)
T ss_dssp HHH--TTCEEEEEC-CEEETTSCEEE---ECHHHHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEECHHHHH
T ss_pred HHH--CCCEEEEcC-cEECCCCCEEE---eCHHHHHHHHHHHcCCCEEEEEeCchhhhc-CCC--CCccccccCCHHHhh
Confidence 898 899999996 58888888764 569999999999999999999999999999 993 799999999999999
Q ss_pred --HHHhhcCCcchH--HHHHHHHhCCC-cEEEEeccCCC-------CCeeEEe
Q 023778 175 --EMSYFGANVLHP--RTIIPVMRYDI-PIVIRNIFNLS-------VPGIMIC 215 (277)
Q Consensus 175 --~l~~~g~~v~~p--~a~~~a~~~~i-~v~I~n~~~~~-------~~GT~I~ 215 (277)
++..++.++|+| +++..|.++|+ +++|.|+++|+ ..||+|.
T Consensus 217 ~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~g~GT~i~ 269 (269)
T 2egx_A 217 DPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALSGEGTVVR 269 (269)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHTTCSEEEC
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhCCCCeEEC
Confidence 997778899999 48889999999 89999998875 4688873
No 22
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.88 E-value=8.1e-23 Score=181.71 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=120.4
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~ 115 (277)
.+.+.+.|+....+.+..+|.++|+++..+ ..+.+.+.. ...+....+.++.+++ .+.|||++|+-+...
T Consensus 65 ~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~~- 134 (251)
T 2ako_A 65 KQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATAI- 134 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------EeccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCceee-
Confidence 467888999999999999999999998643 223222211 1111122367888887 889999986411111
Q ss_pred CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH--HHHHHHh-----hcCCcchH--
Q 023778 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP-- 186 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~--e~~~l~~-----~g~~v~~p-- 186 (277)
++. .++++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++ |+.+++. ++.++|.|
T Consensus 135 ~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~ 211 (251)
T 2ako_A 135 EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKL 211 (251)
T ss_dssp HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHH
T ss_pred cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHH
Confidence 112 35789999999999999999999999999999999999999999999998 9988865 56777776
Q ss_pred HHHHHHHhCCCcEEEEeccCC
Q 023778 187 RTIIPVMRYDIPIVIRNIFNL 207 (277)
Q Consensus 187 ~a~~~a~~~~i~v~I~n~~~~ 207 (277)
+|+..|.++|+|++|.|+++|
T Consensus 212 ~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 212 KAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp HHHHHHHHTTCEEEEEESSSC
T ss_pred HHHHHHHHCCCeEEEEeCCCh
Confidence 588999999999999998665
No 23
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.87 E-value=2e-22 Score=182.90 Aligned_cols=156 Identities=13% Similarity=0.035 Sum_probs=123.1
Q ss_pred HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023778 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (277)
Q Consensus 38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~ 117 (277)
...+.|+......+...|.++|+++..+.+.+..++.+ +...++. +.++++++ .+.|||++|+++.+.+|+
T Consensus 93 ~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~d---g~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~ 163 (286)
T 3d40_A 93 AGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRN---GIPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGK 163 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEET---TEEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSC
T ss_pred hcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccC---CeEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCC
Confidence 34566666678899999999999999998876653222 1112222 57888888 899999999888888887
Q ss_pred ceeccCCCchHHHHHHHHH-hCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--------hcCCcchH--
Q 023778 118 PTTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP-- 186 (277)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~-l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p-- 186 (277)
+. ++++|++|+++|.+ |+|++++|||||||||++||+ ++++|+++++.|+.++.. ++.++|+|
T Consensus 164 ~~---~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl 237 (286)
T 3d40_A 164 LW---AFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL 237 (286)
T ss_dssp EE---EECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH
T ss_pred EE---eeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH
Confidence 53 45799999999999 999999999999999999998 899999999987766632 35689999
Q ss_pred HHHHHHHhCCCcEEEEeccCCC
Q 023778 187 RTIIPVMRYDIPIVIRNIFNLS 208 (277)
Q Consensus 187 ~a~~~a~~~~i~v~I~n~~~~~ 208 (277)
+|+..+.++|+|++|.|+++|+
T Consensus 238 ~Aa~~a~~~gv~v~I~~g~~p~ 259 (286)
T 3d40_A 238 DALVTCARRGAECFIMRGDPGS 259 (286)
T ss_dssp HHHHHHHHTTCEEEEEECCTTC
T ss_pred HHHHHHHHCCCcEEEEeCCCCC
Confidence 5889999999999999998764
No 24
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.87 E-value=1.9e-21 Score=169.37 Aligned_cols=147 Identities=24% Similarity=0.277 Sum_probs=118.7
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023778 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
++...+.+.+.++.+++.++...|... + .. ..++ .+.++++++ .+.|||++|
T Consensus 58 ~~~~l~~~~~~~~~~~~~l~~~~~~~~-~-------------~~-----~~~~----~~~i~~ll~--~g~ipVi~~--- 109 (219)
T 2ij9_A 58 SETFCDYIGIAATRLNAMLLISAIPSA-A-------------KK-----VPVD----FMEAEELSK--LYRVVVMGG--- 109 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTB-C-------------SS-----CCSS----HHHHHHHHT--TCSEEEECC---
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHh-c-------------CC-----CcCC----HHHHHHHHH--CCCEEEEeC---
Confidence 455667777888888888888766543 1 10 0133 367888887 899999998
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-cC-----Ccch
Q 023778 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH 185 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~ 185 (277)
|.. .|++|++|+.+|.+|+|++++|||||||||++||+++|++++|++++++|+.+++.. |. .+++
T Consensus 110 ----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~ 181 (219)
T 2ij9_A 110 ----TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID 181 (219)
T ss_dssp ----CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSC
T ss_pred ----CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchH
Confidence 222 246899999999999999999999999999999999999999999999999999654 43 7889
Q ss_pred HHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778 186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
+.|++.+.+.++|++|.|+ +| +..||+|.
T Consensus 182 ~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 182 LLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999997 54 45789873
No 25
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.86 E-value=4.3e-21 Score=174.90 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=130.2
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC------CCC----cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
+.|+. ...++..|.+.|++++.+++.+..++.... ++. ..++ .+.++++++ .+.|||++|+
T Consensus 113 ~~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~----~~~i~~lL~--~g~IpVi~~v- 183 (298)
T 2rd5_A 113 LVGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVD----PSVLRPLVD--YGYIPVIASV- 183 (298)
T ss_dssp HHHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEEC----GGGHHHHHH--TTCEEEEESE-
T ss_pred HhchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEEC----HHHHHHHHh--CCCEEEEcCe-
Confidence 35776 457899999999999999887543332211 221 1123 367888888 8999999997
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH-
Q 023778 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR- 187 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~- 187 (277)
+.++.|+..++ ++|++|+.+|.+|+|++++|||||||||++||+ | +++|++++++|+.+++..| .++|.|+
T Consensus 184 ~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl 257 (298)
T 2rd5_A 184 AADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKV 257 (298)
T ss_dssp EECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHH
T ss_pred eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHH
Confidence 88888988877 489999999999999999999999999999998 4 8999999999999998754 4679985
Q ss_pred -HHHHHHhCCCc-EEEEeccCCC----------CCeeEEeC
Q 023778 188 -TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR 216 (277)
Q Consensus 188 -a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~ 216 (277)
++..+.++|+| ++|.|+..|+ ..||+|.+
T Consensus 258 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 258 KCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 78888999998 9999987653 46898864
No 26
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.86 E-value=3e-21 Score=172.35 Aligned_cols=155 Identities=15% Similarity=0.100 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-------CCCCc-CCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------SSNQV-DPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-------~~g~~-~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~ 114 (277)
++.+++.++ +.|+++|+++..+++.+..+++.. ..|.. .++. +.++++++ .+.|||++|+ +.+.
T Consensus 81 ~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~~~ 152 (258)
T 1gs5_A 81 AGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTD 152 (258)
T ss_dssp HTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECT
T ss_pred hccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cCCC
Confidence 445666666 467999999999999886444431 11221 2443 67888898 8999999998 8888
Q ss_pred CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcC-----CcchHHHH
Q 023778 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA-----NVLHPRTI 189 (277)
Q Consensus 115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~-----~v~~p~a~ 189 (277)
.|+++++ ++|++|+.+|.+|+|+ +++||||||||++| +++|++++++|+.+++..|. +..++.|+
T Consensus 153 ~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~ 222 (258)
T 1gs5_A 153 EGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAAL 222 (258)
T ss_dssp TSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHH
T ss_pred CCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 9998887 4999999999999999 99999999999975 57999999999999976542 44455688
Q ss_pred HHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023778 190 IPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 190 ~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
+++.+.++|++|.|+++| +..||+|.
T Consensus 223 ~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 223 DAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp HHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred HHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 888888999999998765 35789884
No 27
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.85 E-value=7.8e-21 Score=175.00 Aligned_cols=170 Identities=15% Similarity=0.161 Sum_probs=132.9
Q ss_pred hHHHHH--hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-----CCCCc----CCCchHHHHHHHHHhhcCCCc
Q 023778 34 SFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----SSNQV----DPDFSESEKRLEKWFSQSPSN 102 (277)
Q Consensus 34 ~~~~~v--~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-----~~g~~----~~~~~~~~~~i~~~l~~~~~~ 102 (277)
...+.+ ++.|+. ...++..|.+.|++++.+++.+..++... .++.. .++ .+.++++++ .|.
T Consensus 117 ~~l~~~~~~~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~----~~~i~~lL~--~g~ 188 (321)
T 2v5h_A 117 DTMEVVEMVLVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVN----SEVIEPLLE--RGY 188 (321)
T ss_dssp HHHHHHHHHHHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEEC----GGGTHHHHH--TTC
T ss_pred HHHHHHHHHHhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEec----HHHHHHHHH--CCC
Confidence 444443 346776 45789999999999999987754222211 23321 123 367888888 899
Q ss_pred eEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--
Q 023778 103 TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-- 180 (277)
Q Consensus 103 VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g-- 180 (277)
|||+++ ++.++.|+..++ ++|++|+.+|.+|+|++++|+|||||||++||+ ++++|++++++|+.+++..|
T Consensus 189 IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~ 261 (321)
T 2v5h_A 189 IPVISS-VAADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIV 261 (321)
T ss_dssp EEEEES-EEECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSS
T ss_pred eEEEeC-ceECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCC
Confidence 999996 488888876544 589999999999999999999999999999998 58999999999999998754
Q ss_pred CCcchH--HHHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023778 181 ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP 218 (277)
Q Consensus 181 ~~v~~p--~a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~ 218 (277)
.++|+| +++..|.++|+| ++|.|+..| +..||+|.+..
T Consensus 262 ~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~ 312 (321)
T 2v5h_A 262 GGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSG 312 (321)
T ss_dssp CTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC-
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCc
Confidence 578998 588999999999 999997654 35799998753
No 28
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.85 E-value=1.6e-20 Score=169.01 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceecc---C
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK---R 123 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lg---r 123 (277)
+..++...|.++|++. ++. .|+ +.++++++ .+.|||++|+.+.+.....++.| +
T Consensus 110 ~~l~~~~~l~~~G~~~----------vt~-------~d~----~~i~~lL~--~g~ipVi~g~~g~~~~~~~~~~g~~~~ 166 (270)
T 2ogx_B 110 NAAMLGQLLAKHGIPV----------VGG-------AGL----SAVPLSLA--EVNAVVFSGMPPYKLWMRPAAEGVIPP 166 (270)
T ss_dssp HHHHHHHHHGGGTCCB----------CCS-------STT----CHHHHHCT--TCCEEEEECSCTTGGGCCCCSSSSSCS
T ss_pred HHHHHHHHHHhcCCce----------ecH-------hhH----HHHHHHHh--CCCEEEEeCCccccccccccccccCCC
Confidence 3555666666777761 121 233 35788887 88999999987655321111222 3
Q ss_pred CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh--CCCcEEE
Q 023778 124 DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR--YDIPIVI 201 (277)
Q Consensus 124 ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~--~~i~v~I 201 (277)
+++|++|+.+|.+++|+++++||||||||++||+++|++++|++++++|+.+++..| .++++.+...+.. .++|++|
T Consensus 167 ~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I 245 (270)
T 2ogx_B 167 YRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQV 245 (270)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEE
T ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEE
Confidence 789999999999999999999999999999999999999999999999999987544 5677766655554 5779999
Q ss_pred EeccCCC---------CCeeEEeC
Q 023778 202 RNIFNLS---------VPGIMICR 216 (277)
Q Consensus 202 ~n~~~~~---------~~GT~I~~ 216 (277)
.|+++|+ ..||+|.+
T Consensus 246 ~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 246 VNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp EETTSTTHHHHHHTTCCCSEEEEC
T ss_pred EeCCCchHHHHHHcCCCCCeEecC
Confidence 9998764 67999975
No 29
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.84 E-value=3.3e-20 Score=167.68 Aligned_cols=158 Identities=18% Similarity=0.145 Sum_probs=127.2
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC------CCCC-c---CCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023778 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------SSNQ-V---DPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~------~~g~-~---~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
+.|+. ...++..|.+.|++++.+++.+..++... .++. . .++ .+.++++++ .+.|||++|+
T Consensus 98 ~~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~----~~~i~~ll~--~g~IpVi~~v- 168 (282)
T 2bty_A 98 LVGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVN----PEILHALIE--NDYIPVIAPV- 168 (282)
T ss_dssp HHHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEEC----THHHHHHHH--TTCEEEEESE-
T ss_pred HhhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEec----HHHHHHHHH--CCCEEEECCC-
Confidence 36776 56689999999999999987754322211 2332 1 233 378889998 8999999997
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH--
Q 023778 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP-- 186 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p-- 186 (277)
+.++.|+..++ ++|++|+.+|.+|+|++++|||||||||++ | ++|++++++|+.+++..| .++|.|
T Consensus 169 ~~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~ 238 (282)
T 2bty_A 169 GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKV 238 (282)
T ss_dssp EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHH
T ss_pred ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHH
Confidence 88888988877 589999999999999999999999999997 2 899999999999998755 366877
Q ss_pred HHHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCC
Q 023778 187 RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP 217 (277)
Q Consensus 187 ~a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~ 217 (277)
+++..+.++|+| ++|.|+..|+ ..||+|.+.
T Consensus 239 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp HHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred HHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 588999999998 9999987653 579999753
No 30
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.82 E-value=5.6e-20 Score=163.59 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCC
Q 023778 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (277)
Q Consensus 45 ~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrg 124 (277)
.++..++ ++|.++|+++..+++.++.. . ++ ++. +.++++++ .+.|||++|+++.+.+|++.++
T Consensus 83 ~ln~~~v-~~l~~~G~~a~~l~~~~~~~-~----g~--v~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~~--- 145 (249)
T 3ll5_A 83 NLDLMVI-DAMIEMGMRPISVPISALRY-D----GR--FDY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGIY--- 145 (249)
T ss_dssp HHHHHHH-HHHHHTTCCEEECCGGGSCB-S----SS--BCC----HHHHHHHH--TTCEEEEECEEEEEETTEEEEE---
T ss_pred HHHHHHH-HHHHHCCCcEEEEcHHHccc-c----cE--EcH----HHHHHHHH--CCCEEEECCCEEEcCCCceeee---
Confidence 3444444 89999999999999988753 1 22 233 78899998 8999999998887766765543
Q ss_pred CchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHH--hhcCCcchHH--HHHHH-HhCCCcE
Q 023778 125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPI 199 (277)
Q Consensus 125 gsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~--~~g~~v~~p~--a~~~a-~~~~i~v 199 (277)
++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++ +++.... ..+..+|.|+ ++..+ .++|+++
T Consensus 146 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v 224 (249)
T 3ll5_A 146 SGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGV 224 (249)
T ss_dssp CHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCE
T ss_pred cHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEE
Confidence 589999999999999999999999999999999999999999995 2222221 1345788885 45555 8999999
Q ss_pred EEEeccCC--------CCC-eeEE
Q 023778 200 VIRNIFNL--------SVP-GIMI 214 (277)
Q Consensus 200 ~I~n~~~~--------~~~-GT~I 214 (277)
+|.|++.| +.. ||+|
T Consensus 225 ~I~~g~~~~~l~~l~g~~~~GT~i 248 (249)
T 3ll5_A 225 YLINGNHPERIGDIGKESFIGTVI 248 (249)
T ss_dssp EEEETTSGGGGGGTTSTTCCSEEE
T ss_pred EEEeCCChhHHHHhCCCCCCCEEe
Confidence 99998654 345 8877
No 31
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.82 E-value=3.5e-19 Score=162.47 Aligned_cols=169 Identities=14% Similarity=0.178 Sum_probs=131.7
Q ss_pred hHHHHH--hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC-----------------CCCCc-CCCchHHHHHHH
Q 023778 34 SFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------------SSNQV-DPDFSESEKRLE 93 (277)
Q Consensus 34 ~~~~~v--~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-----------------~~g~~-~~~~~~~~~~i~ 93 (277)
...+.+ ++.|+. ...+++.|.+.|++++.+++.+-.+++.. .++.. .+.+ ...+.++
T Consensus 94 ~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~-v~~~~i~ 170 (300)
T 2buf_A 94 ATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTG-VNVGLLN 170 (300)
T ss_dssp HHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEE-ECHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEE-ECHHHHH
Confidence 344444 446887 88999999999999999987644322211 12211 1111 1147788
Q ss_pred HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023778 94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173 (277)
Q Consensus 94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~ 173 (277)
++++ .+.|||+++ ++.++.|+..++ ++|++|+.+|.+|+|++++|||||||||++ ++++|++++++|+
T Consensus 171 ~lL~--~g~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~ 238 (300)
T 2buf_A 171 MLVK--GDFIPVIAP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQV 238 (300)
T ss_dssp HHHH--TTCEEEEEE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHH
T ss_pred HHHH--CCCEEEEcC-ceeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHH
Confidence 8998 899999996 488888888766 489999999999999999999999999986 4889999999999
Q ss_pred HHHHhhc--CCcchH--HHHHHHHhCCCc-EEEEeccCCC----------CCeeEEeCC
Q 023778 174 WEMSYFG--ANVLHP--RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP 217 (277)
Q Consensus 174 ~~l~~~g--~~v~~p--~a~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~~~ 217 (277)
.+++..| .++|+| +++..+.++|+| ++|.|+..|+ ..||+|.+.
T Consensus 239 ~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 239 NELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 9998754 578999 578889999999 9999986553 579999764
No 32
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.80 E-value=2.2e-19 Score=162.14 Aligned_cols=148 Identities=14% Similarity=0.266 Sum_probs=124.7
Q ss_pred HHHHHHHHHCCCCeEEEccccceeecCCCC-----CC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCce
Q 023778 49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT 119 (277)
Q Consensus 49 ~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~ 119 (277)
..+++.|.+.|+++..+++.+..+++...+ +. .+++ .+.++++++ .+.|||++| ++.+++|+..
T Consensus 117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~----~~~i~~lL~--~g~IPVi~~-v~~~~~G~~~ 189 (279)
T 3l86_A 117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHIN----KRVIEEFLE--NRQIPILAS-LGYSKEGDML 189 (279)
T ss_dssp HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEEC----HHHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhh----HHHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence 789999999999999999988655554322 11 1233 488999998 899999999 7888889888
Q ss_pred eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH--HHHHHHHhC
Q 023778 120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY 195 (277)
Q Consensus 120 ~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--~a~~~a~~~ 195 (277)
++ ++|++|+.+|.+|+|++++|+|||||||+ ++++|++++++|+.+++..+ ..+|.| +++..|.++
T Consensus 190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~ 259 (279)
T 3l86_A 190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA 259 (279)
T ss_dssp EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence 77 58999999999999999999999999994 47899999999999997644 578888 588999999
Q ss_pred CCc-EEEEeccCCCCCeeEEeC
Q 023778 196 DIP-IVIRNIFNLSVPGIMICR 216 (277)
Q Consensus 196 ~i~-v~I~n~~~~~~~GT~I~~ 216 (277)
|++ ++|.|++.. ||+|..
T Consensus 260 Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 260 GVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp TCSEEEEESSSSC---SEEEEC
T ss_pred CCCEEEEeccCCC---CeEEec
Confidence 998 999999974 999965
No 33
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.80 E-value=1e-18 Score=160.31 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=98.9
Q ss_pred HHHHHHHhhcCCCceEEecCc----cccCCCCCceecc---CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCC
Q 023778 89 EKRLEKWFSQSPSNTIIATGF----IASTPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~----i~~~~~G~~~~lg---rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~ 161 (277)
.+.++++++ .+.|||++|+ ++.+.++ ++| ++++|++|+.+|.+|+|++++|+|||||||++|| +|+
T Consensus 176 ~~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~ 248 (314)
T 1e19_A 176 AETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEK 248 (314)
T ss_dssp HHHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STT
T ss_pred HHHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCC
Confidence 478899998 8999999985 3333333 344 4889999999999999999999999999999999 489
Q ss_pred CeEEeeeCHHHHHHHHhhc---CCcchHH---HHHHHHhCCCcEEEEec------cCCCCCeeEEeC
Q 023778 162 AVILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR 216 (277)
Q Consensus 162 a~~i~~is~~e~~~l~~~g---~~v~~p~---a~~~a~~~~i~v~I~n~------~~~~~~GT~I~~ 216 (277)
+++|++++++|+.+++..| .++|.|+ |++.+.+.+++++|.|. +.. ..||+|.+
T Consensus 249 a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 249 EQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp CEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred CeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 9999999999999997754 3789997 66778888999999983 343 47999964
No 34
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.76 E-value=1.6e-17 Score=149.16 Aligned_cols=153 Identities=13% Similarity=0.082 Sum_probs=114.7
Q ss_pred hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCce
Q 023778 40 VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT 119 (277)
Q Consensus 40 ~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~ 119 (277)
-+.++ ++. .++++|.++|+++..+++.++...+.+ ..++. +.++++++ .+.|||++||++.+.+|++.
T Consensus 94 ~a~~~-ln~-~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~ 161 (266)
T 3k4o_A 94 RAMRR-FNN-IIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYR 161 (266)
T ss_dssp HHHHH-HHH-HHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEE
T ss_pred HHHHH-HHH-HHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCee
Confidence 34444 344 478999999999999999988665532 23444 78899998 89999999988888877764
Q ss_pred eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--------hcCCcchHHH--H
Q 023778 120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHPRT--I 189 (277)
Q Consensus 120 ~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p~a--~ 189 (277)
+ +++|++|+.+|.+|+|+++++|||||||| +||+ ++++++..|+.++.. .+..+|.|+. +
T Consensus 162 ~---~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa 231 (266)
T 3k4o_A 162 I---ISGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMI 231 (266)
T ss_dssp E---ECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHH
T ss_pred e---eCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHH
Confidence 3 46899999999999999999999999999 8876 455555544444432 2345788863 3
Q ss_pred HHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023778 190 IPVMRYDIPIVIRNIFNL---------SVPGIMICRP 217 (277)
Q Consensus 190 ~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~ 217 (277)
..+.+ +++|.|++.| +..||+|.+.
T Consensus 232 ~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 232 RKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp HHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 33333 9999998765 3579999874
No 35
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.72 E-value=8.4e-17 Score=147.72 Aligned_cols=120 Identities=19% Similarity=0.228 Sum_probs=95.3
Q ss_pred HHHHHHHhhcCCCceEEecCcc----ccCCCCCc----eeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCC
Q 023778 89 EKRLEKWFSQSPSNTIIATGFI----ASTPDNIP----TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i----~~~~~G~~----~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~ 160 (277)
.+.++++++ .+.|||++|+- +.+++|.. .++ ++|++|+.+|.+|+|+.++|+|||||||+ ||+ +|
T Consensus 176 ~~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p 248 (316)
T 2e9y_A 176 RDLIAEASA--ESPAVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-RE 248 (316)
T ss_dssp HHHHHHHHH--HCSEEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-ST
T ss_pred HHHHHHHHH--CCCEEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CC
Confidence 478888998 78999998743 34566632 222 68999999999999999999999999999 885 78
Q ss_pred CCeEEeeeCHHHHHHHHhh---cCCcchHH--HHHHHHhCCC-cEEEEecc------CCCCCeeEEeC
Q 023778 161 EAVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR 216 (277)
Q Consensus 161 ~a~~i~~is~~e~~~l~~~---g~~v~~p~--a~~~a~~~~i-~v~I~n~~------~~~~~GT~I~~ 216 (277)
++++|++++++|+.+++.. +..+|.|+ ++..+.++|+ +++|.|.. .. ..||+|.+
T Consensus 249 ~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 249 GERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp TCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred CCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 9999999999999999763 34678885 5666778899 79997631 22 57999864
No 36
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.70 E-value=1.3e-16 Score=152.80 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=120.7
Q ss_pred hcHHHHHHHHHHHHHHCCCCe----EEEccccceeecCCC--------CCC-cCCCchHHHHHHHHHhhcCCCceEEecC
Q 023778 42 HGELWSAQMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ-VDPDFSESEKRLEKWFSQSPSNTIIATG 108 (277)
Q Consensus 42 ~Ge~~s~~ll~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G 108 (277)
.|+. ...+.+.|. .|+++ +.+++.+..+++... ++. ..+..-. .+.++++++ .|.|||+++
T Consensus 119 ~G~~--~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~--~g~ipIi~~ 192 (456)
T 3d2m_A 119 AGTV--RSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTD-TAALRFQLD--AGNIVWMPP 192 (456)
T ss_dssp HHHH--HHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEEC-HHHHHHHHH--TTCEEEECS
T ss_pred HhHH--HHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEEC-HHHHHHHHH--CCCeEEECC
Confidence 4654 346677888 99998 667666533333211 121 0111111 378999998 899999999
Q ss_pred ccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchH--
Q 023778 109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP-- 186 (277)
Q Consensus 109 ~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p-- 186 (277)
+ +.+..|++.++ ++|++|+.+|.+|+|+.++|+|||||||++ ++++|++++++|+.+++..|.++|.|
T Consensus 193 ~-~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl 262 (456)
T 3d2m_A 193 L-GHSYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLI 262 (456)
T ss_dssp E-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHH
T ss_pred c-ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHH
Confidence 6 77888988876 589999999999999999999999999985 58899999999999998777789999
Q ss_pred HHHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023778 187 RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP 218 (277)
Q Consensus 187 ~a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~ 218 (277)
+++..|.++|++ ++|.|+..| +..||+|.+..
T Consensus 263 ~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~ 305 (456)
T 3d2m_A 263 SSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEA 305 (456)
T ss_dssp HHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCC
T ss_pred HHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeeccc
Confidence 578888999996 999997544 45799998754
No 37
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.69 E-value=3.5e-16 Score=142.88 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=122.5
Q ss_pred hHHHHH-hhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecC---CCCC---C-cCCCchHHHHHHHHHhhcCCCceEE
Q 023778 34 SFTDFV-VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII 105 (277)
Q Consensus 34 ~~~~~v-~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~---~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpV 105 (277)
+..+.+ -.+|+ + ...+++.|.+.|++|+++++. ++.... ..+| + .+++. +.++++++ .|.|||
T Consensus 114 ~~l~vv~m~~~~-v-n~~lv~~L~~~G~~Av~l~gg-~~~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~IpV 184 (307)
T 3zzh_A 114 HTMAVVRKCFLE-Q-NLKLVTALEQLGVRARPITSG-VFTADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPI 184 (307)
T ss_dssp HHHHHHHHHHHH-H-HHHHHHHHHHTTCCEEEECSS-SEEEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEEE
T ss_pred HHHHHHHHHHHH-H-HHHHHHHHHhCCCCeeEEcCC-cEEEEecCccccCccccccccCH----HHHHHHHH--CCCEEE
Confidence 344443 23565 4 466689999999999999873 322110 0122 1 23554 78899998 889999
Q ss_pred ecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHH-HHHHHhhc--CC
Q 023778 106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--AN 182 (277)
Q Consensus 106 v~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~ 182 (277)
++|+ +.+.+|++.++ ++|++|+.+|.+|+|++++|+|||||||++ |++++|+++++.| +.++...+ ..
T Consensus 185 i~~~-g~~~~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tG 255 (307)
T 3zzh_A 185 LTSL-AETASGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKY 255 (307)
T ss_dssp ECCC-EECTTCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCH
T ss_pred EeCC-eECCCCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCC
Confidence 9997 78888988876 589999999999999999999999999986 5789999999976 66776543 46
Q ss_pred cchHH--HHHHHHh---CCCcEEEEecc-------CCCCCeeEEeCC
Q 023778 183 VLHPR--TIIPVMR---YDIPIVIRNIF-------NLSVPGIMICRP 217 (277)
Q Consensus 183 v~~p~--a~~~a~~---~~i~v~I~n~~-------~~~~~GT~I~~~ 217 (277)
+|.|+ +++.|.+ .+.++.|.+.. ..+..||+|.+.
T Consensus 256 GM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 256 GTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred cHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence 88886 3333333 37889998742 346789999874
No 38
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.67 E-value=2.6e-16 Score=144.07 Aligned_cols=120 Identities=16% Similarity=0.195 Sum_probs=95.5
Q ss_pred HHHHHHHhhcCCCceEEecCcccc-----CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023778 89 EKRLEKWFSQSPSNTIIATGFIAS-----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV 163 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~-----~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~ 163 (277)
.+.++++++ .+.|||++|+.|. +..|+..+ .++|++|+.+|.+|+|++++|+|||||||+ || .+|+++
T Consensus 172 ~~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~ 244 (310)
T 2we5_A 172 AETINTLIK--NDIITISCGGGGIPVVGQELKGVEAV---IDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEK 244 (310)
T ss_dssp HHHHHHHHH--TTCEEECCGGGCEEEETTTTEECCCC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCE
T ss_pred HHHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEee---cCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCe
Confidence 488999998 8999999976431 12333333 358999999999999999999999999999 88 488999
Q ss_pred EEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC--cEEEEec------cCCCCCeeEEe
Q 023778 164 ILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC 215 (277)
Q Consensus 164 ~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~I~n~------~~~~~~GT~I~ 215 (277)
+|++++++|+.+++..| ..+|.|+ ++..+.++|+ +++|.|. +..+..||+|.
T Consensus 245 ~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 245 QLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp ECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred ECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 99999999999997644 3678885 6677788888 8999752 23346789885
No 39
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.65 E-value=3.8e-15 Score=142.81 Aligned_cols=159 Identities=14% Similarity=0.152 Sum_probs=121.5
Q ss_pred hcHHHHHHHHHHHHHHCCCCeEEEccccceeec---CCCCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023778 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (277)
Q Consensus 42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~---~~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~ 114 (277)
.|+ + ...+++.|.++|++|+++++. ++... ...+|. .+++. +.++.+++ .|.|||++|+ +.+.
T Consensus 123 ~~~-v-n~~lv~~L~~~G~~Avglsgg-~~~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~ 192 (464)
T 4ab7_A 123 FLE-Q-NLKLVTALEQLGVRARPITSG-VFTADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA 192 (464)
T ss_dssp HHH-H-HHHHHHHHHHTTCCEEEECSS-SEEEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECT
T ss_pred HHH-H-HHHHHHHHHhCCCCeEEECCC-cEEEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCC
Confidence 454 3 466889999999999999873 32221 112332 23554 88999998 8999999997 8888
Q ss_pred CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHH-HHHHHhhc--CCcchHH--HH
Q 023778 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--ANVLHPR--TI 189 (277)
Q Consensus 115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~v~~p~--a~ 189 (277)
+|++.++ ++|++|+.+|.+|+|++++++|||+|||++ |++++|+++++.| +.++...| ..+|.|+ ++
T Consensus 193 ~G~~~ni---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa 264 (464)
T 4ab7_A 193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI 264 (464)
T ss_dssp TCBEEEC---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred CCCEEEe---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 8998876 599999999999999999999999999986 4689999999976 56676543 4679986 45
Q ss_pred HHHHhC---CCcEEEEecc-------CCCCCeeEEeCCC
Q 023778 190 IPVMRY---DIPIVIRNIF-------NLSVPGIMICRPP 218 (277)
Q Consensus 190 ~~a~~~---~i~v~I~n~~-------~~~~~GT~I~~~~ 218 (277)
+.|.+. +.++.|.+.. ..+..||+|.+..
T Consensus 265 ~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~~ 303 (464)
T 4ab7_A 265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY 303 (464)
T ss_dssp HHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEEECCC
T ss_pred HHHHHhcccCcEEEEecChHHHHHHhcCCCCceEEecCc
Confidence 555543 7789998742 3456899998873
No 40
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.62 E-value=2.7e-15 Score=136.76 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=94.5
Q ss_pred HHHHHHhhcCCCceEEecCcccc---CCCCCce-eccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023778 90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~i~~---~~~G~~~-~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
+.|+.+++ .+.|||++|+-|. ++++..+ +...+++|++|+.+|.+|+|+.++|+|||||||+ ||+ .|++++|
T Consensus 179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I 254 (317)
T 3kzf_A 179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL 254 (317)
T ss_dssp HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence 67888888 8999999876443 2333332 3346679999999999999999999999999999 999 5999999
Q ss_pred eeeCHHHHHHHHhhc---CCcchHH--HHHH-HHhCCCcEEEEecc------CCCCCeeEEeC
Q 023778 166 RTLSYQEAWEMSYFG---ANVLHPR--TIIP-VMRYDIPIVIRNIF------NLSVPGIMICR 216 (277)
Q Consensus 166 ~~is~~e~~~l~~~g---~~v~~p~--a~~~-a~~~~i~v~I~n~~------~~~~~GT~I~~ 216 (277)
++++++|+.+++..| ...|.|+ ++.. +.+.+.+++|.|.. +.+ .||+|.+
T Consensus 255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I~~ 316 (317)
T 3kzf_A 255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRIIK 316 (317)
T ss_dssp CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEEEC
T ss_pred cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEEec
Confidence 999999999997543 4678885 4444 45556689999874 233 7999976
No 41
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.61 E-value=7.4e-15 Score=140.86 Aligned_cols=157 Identities=14% Similarity=0.148 Sum_probs=119.5
Q ss_pred hcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCCCCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023778 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (277)
Q Consensus 42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~ 115 (277)
.| .++ ..++++|.+.|++|+++.+..+. ..+...+|. ..++. +.++++++ .|.|||++++ +.+..
T Consensus 133 lg-~vn-~~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~ 203 (460)
T 3s6g_A 133 LT-QAN-LALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD 203 (460)
T ss_dssp HH-HHH-HHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred HH-HHH-HHHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence 56 455 45556999999999999985441 112223432 23554 88999998 8999999986 77888
Q ss_pred CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH-HHHHHHhhc--CCcchHH--HHH
Q 023778 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYFG--ANVLHPR--TII 190 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~-e~~~l~~~g--~~v~~p~--a~~ 190 (277)
|++.++ ++|.+|+.+|.+|+|++++++|||+|||+. ++++|++++.. |+.++...+ ..+|.|+ ++.
T Consensus 204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~ 274 (460)
T 3s6g_A 204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK 274 (460)
T ss_dssp CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 998876 589999999999999999999999999974 47899999996 888887643 4688885 556
Q ss_pred HHHhCCC-cEEEEeccCC----------CCCeeEEeCC
Q 023778 191 PVMRYDI-PIVIRNIFNL----------SVPGIMICRP 217 (277)
Q Consensus 191 ~a~~~~i-~v~I~n~~~~----------~~~GT~I~~~ 217 (277)
.+.+ ++ ++.+.++..| +..||+|.+.
T Consensus 275 ~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 275 RLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp HHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred HHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 6666 55 4777776543 4689999876
No 42
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.50 E-value=1.4e-14 Score=139.01 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=119.7
Q ss_pred hHHHHHh-hhcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCCCCC---C-cCCCchHHHHHHHHHhhcCCCceEEe
Q 023778 34 SFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIA 106 (277)
Q Consensus 34 ~~~~~v~-s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv 106 (277)
...+.+. +.| .++. .++++|.++|++|+++.+..+. ..+...+| + ..++. +.++.+++ .|.|||+
T Consensus 127 ~~l~vv~~~~g-~vn~-~Lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi 198 (467)
T 3s6k_A 127 HALAIVRKVFQ-ASNL-KLVEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPVI 198 (467)
T ss_dssp HHHHHHHHHHH-HHHH-HHHHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCCC
T ss_pred HHHHHHHHHHH-HHHH-HHHHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEEE
Confidence 3344443 356 4555 4555999999999999885441 11222333 2 24555 78899998 8899999
Q ss_pred cCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH-HHHHHHhhc--CCc
Q 023778 107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYFG--ANV 183 (277)
Q Consensus 107 ~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~-e~~~l~~~g--~~v 183 (277)
++. +.+..|++.++ ++|++|+.+|.+|+|++++|+|||+|||+. ++++|++++.. |+.++...+ ..+
T Consensus 199 ~pv-g~~~~G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGG 268 (467)
T 3s6k_A 199 TSL-GETPSGQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDA------EGKLIDSINLSTEYDHLMQQPWINGG 268 (467)
T ss_dssp CSC-CCCSSSCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCS------SCCCCCCCCTTTTTHHHHTSSSCCSH
T ss_pred ECc-eECCCCcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCC------CCCCccccChHHHHHHHHhcCCCCCc
Confidence 953 55677888776 589999999999999999999999999974 46789999985 777776533 578
Q ss_pred chHH--HHHHHHhCCCcEEEEeccCC----------CCCeeEEeCC
Q 023778 184 LHPR--TIIPVMRYDIPIVIRNIFNL----------SVPGIMICRP 217 (277)
Q Consensus 184 ~~p~--a~~~a~~~~i~v~I~n~~~~----------~~~GT~I~~~ 217 (277)
|.|+ ++..+.+...++.+.++..| +..||+|.+.
T Consensus 269 M~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 269 MRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp HHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred hHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 8885 56666664335777776554 3579999875
No 43
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.34 E-value=7.5e-12 Score=115.31 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=87.7
Q ss_pred HHHHHHhhcCCCceEEecCc--cccC-----CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023778 90 KRLEKWFSQSPSNTIIATGF--IAST-----PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~--i~~~-----~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a 162 (277)
+.+..+++ .+.|||..|. ++.. .+|...+ .++|++|+.+|.+++||.++|+|||||||+.+|+ |++
T Consensus 194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~ 266 (332)
T 4axs_A 194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ 266 (332)
T ss_dssp HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred HHHHHhhc--CCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence 66788887 7888877552 1111 1222222 4689999999999999999999999999998876 789
Q ss_pred eEEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC--cEEEEeccC-----CCCCeeEEe
Q 023778 163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNIFN-----LSVPGIMIC 215 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~I~n~~~-----~~~~GT~I~ 215 (277)
++|++++.+|+.++...| ...|-|| |+..+.+++. .++|.+..+ ....||+|.
T Consensus 267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 999999999999997644 5679996 5666666654 566755321 124699985
No 44
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=98.69 E-value=8.2e-08 Score=80.64 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCcchHHHHHHHHhCCCc--EEEEeccCCCCCeeEEeCCCCCCCc-----chh--hccCCceeeEeecCeeEEEEecCCC
Q 023778 181 ANVLHPRTIIPVMRYDIP--IVIRNIFNLSVPGIMICRPPVDENE-----DEQ--IIDSPVKGFATIDNLALVNVEGTGM 251 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~--v~I~n~~~~~~~GT~I~~~~~~~~~-----~~~--~~~~~v~~i~~~~nia~Isvvg~gm 251 (277)
..++-.+.+.++.++||+ +.+.|.++|+..+|.|+-.-...+. ..+ ......+.+++.+++++|+++|.||
T Consensus 26 ~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm 105 (178)
T 2dtj_A 26 KPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGM 105 (178)
T ss_dssp STTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECC
T ss_pred CccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCc
Confidence 455666788899999965 5556666665556666421100000 000 0112356789999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.+.||+++|+|++|+++||||.||+
T Consensus 106 ~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 106 KSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccCccHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999999985
No 45
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.59 E-value=4.7e-08 Score=83.85 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=63.5
Q ss_pred CCcchHHHHHHHHhCCCcEEEEeccCCC-CCee-EEeCC--CCCCCcch----h-hccCCceeeEeecCeeEEEEecCCC
Q 023778 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLS-VPGI-MICRP--PVDENEDE----Q-IIDSPVKGFATIDNLALVNVEGTGM 251 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT-~I~~~--~~~~~~~~----~-~~~~~v~~i~~~~nia~Isvvg~gm 251 (277)
..++-.+.+..+.++||++-.......+ ..++ .++-. ..+..... + ........+.+++++++|+++|.||
T Consensus 46 ~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~~~~~~~~~~v~~~~~iakVSvVG~GM 125 (200)
T 4go7_X 46 IPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAGM 125 (200)
T ss_dssp STTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHTTHHHHCCSEEEEECCEEEEEEEEESC
T ss_pred CccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHHHHhhhceeeEEEecCeeeeeeecccc
Confidence 3455567778888889886554332211 1122 12111 00000000 0 0112456889999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.++||+++|+|++|+++||||.||+
T Consensus 126 ~~~~GVaak~F~aLa~~~INI~mIs 150 (200)
T 4go7_X 126 RSHPGVTATFCEALAAVGVNIELIS 150 (200)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccCCCcHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999999997
No 46
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=98.53 E-value=4.8e-08 Score=83.78 Aligned_cols=48 Identities=33% Similarity=0.469 Sum_probs=45.2
Q ss_pred ccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 228 ~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++.|++|+.++|.++|+|.| |.+.||+++|+|++|+++||||+||+|
T Consensus 22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Q 69 (200)
T 4go7_X 22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQ 69 (200)
T ss_dssp CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEEC
T ss_pred ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEee
Confidence 456799999999999999986 899999999999999999999999998
No 47
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.53 E-value=6.2e-08 Score=79.66 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=46.8
Q ss_pred ccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 228 ~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..+.+++|+.++|+++|+|.|.+|.+.||+++++|+.|+++||+|+||+|
T Consensus 5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~ 54 (157)
T 3mah_A 5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54 (157)
T ss_dssp --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC
T ss_pred CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 45789999999999999999999999999999999999999999999987
No 48
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=98.46 E-value=2.8e-07 Score=77.75 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=66.4
Q ss_pred cCCcchHHHHHHHHhCCCcEEEEeccCCCC-Ce-eEEe---CCCCCCC----cchhhccCCceeeEeecCeeEEEEecCC
Q 023778 180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PG-IMIC---RPPVDEN----EDEQIIDSPVKGFATIDNLALVNVEGTG 250 (277)
Q Consensus 180 g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~-~G-T~I~---~~~~~~~----~~~~~~~~~v~~i~~~~nia~Isvvg~g 250 (277)
+..++..+.+..+.++||++.......++. .| +.|+ +...-.. +..-...-....+.+++++++|+++|.|
T Consensus 26 ~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~g 105 (181)
T 3s1t_A 26 DIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGAG 105 (181)
T ss_dssp SSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEEC
T ss_pred CCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEecc
Confidence 455667778888999999876554433321 22 1221 2211000 0000001135678999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 251 MAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
|.+.||+++|+|++|+++||||.||+
T Consensus 106 m~~~~Gvaa~~f~aLa~~~InI~~Is 131 (181)
T 3s1t_A 106 MRSHPGVTATFCEALAAVGVNIELIS 131 (181)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred cccCchHHHHHHHHHHHCCCcEEEEE
Confidence 99999999999999999999999986
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.32 E-value=4.4e-07 Score=75.25 Aligned_cols=95 Identities=20% Similarity=0.109 Sum_probs=64.0
Q ss_pred CCcchHHHHHHHHhCCCcEEEEeccCCCCCe----eEEeCCCCCCC--cchh--hccCCceeeEeecCeeEEEEecCCCC
Q 023778 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG----IMICRPPVDEN--EDEQ--IIDSPVKGFATIDNLALVNVEGTGMA 252 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~G----T~I~~~~~~~~--~~~~--~~~~~v~~i~~~~nia~Isvvg~gm~ 252 (277)
..++-.+.+..+.++||++...+...... | +.+.+...... ...+ .....++.+++++++++|+|+|.+|.
T Consensus 36 ~~G~~~~if~~La~~~Invd~i~~s~~~~-g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~ 114 (167)
T 2re1_A 36 KPGVAYQILGAVADANIEVDMIIQNVGSE-GTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMR 114 (167)
T ss_dssp CTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCT
T ss_pred CcCHHHHHHHHHHHcCCeEEEEEcCCCCC-CeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcC
Confidence 34566678888899999876654432211 3 12223211000 0000 01123567899999999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEe
Q 023778 253 GVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.||+++|+|++|+++||||.|++
T Consensus 115 ~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 115 SHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp TCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcCHHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999875
No 50
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=98.31 E-value=4.6e-07 Score=75.11 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=62.5
Q ss_pred CCcchHHHHHHHHhCCCcEEEEeccCCC-CCe-eE---EeCCCCCCC-c-chhh--ccCCceeeEeecCeeEEEEecCCC
Q 023778 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IM---ICRPPVDEN-E-DEQI--IDSPVKGFATIDNLALVNVEGTGM 251 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~G-T~---I~~~~~~~~-~-~~~~--~~~~v~~i~~~~nia~Isvvg~gm 251 (277)
..++-.+.+..+.++||++...+...+. ..| +. +.+...... . .... ..... .+.+.+++++++++|.||
T Consensus 27 ~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~~-~v~~~~~~a~vsvVG~gm 105 (167)
T 2dt9_A 27 QPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIGG-EAILRPDIAKVSIVGVGL 105 (167)
T ss_dssp STTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHCC-EEEEECSEEEEEEEESSG
T ss_pred CCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhCC-cEEEeCCEEEEEEECCCc
Confidence 3455567778888889987655443221 123 12 222111000 0 0000 00123 788999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.+.||+++|+|++|+++||||.||+
T Consensus 106 ~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 106 ASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp GGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred ccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 9999999999999999999999985
No 51
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=98.15 E-value=1.4e-06 Score=83.84 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=63.4
Q ss_pred chHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC----cchhh------c-cC--CceeeEeecCeeEEEEecCC
Q 023778 184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN----EDEQI------I-DS--PVKGFATIDNLALVNVEGTG 250 (277)
Q Consensus 184 ~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~----~~~~~------~-~~--~v~~i~~~~nia~Isvvg~g 250 (277)
+..+.+..+.+++|++...+....+..=|.+.+...... +..+. . .. .+..+.+.+|+++|+|+|.|
T Consensus 334 ~~a~if~~La~~~InV~~IsQ~tse~~Is~~V~~~d~~~a~~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~a~vsvVG~g 413 (473)
T 3c1m_A 334 TAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDVCVISVVGAG 413 (473)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCTTCCEEEEEEGGGHHHHHHHHHHHHCC----CTTSCCCEEEEEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEechHHHHHHHHHHHHHhhhcccccccccccceEEEeCCcEEEEEEecC
Confidence 334677888899999877653211211122222211000 00000 0 11 15678999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 251 MAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
|.++||+++|+|++|+++||||.||+|
T Consensus 414 m~~~~Gvaak~f~aL~~~~InI~misq 440 (473)
T 3c1m_A 414 MRGAKGIAGKIFTAVSESGANIKMIAQ 440 (473)
T ss_dssp TTTCTTHHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCChhHHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999986
No 52
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=98.14 E-value=1.5e-06 Score=83.07 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=65.9
Q ss_pred CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC---cchhhc-cCCceeeEeecCeeEEEEecCCCCCchh
Q 023778 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN---EDEQII-DSPVKGFATIDNLALVNVEGTGMAGVPG 256 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~---~~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~g 256 (277)
..++..+.+..+.+++|++...+... ....-.+........ ...+.. .-....+.+++++++|+++|.||.++||
T Consensus 311 ~~g~~~~if~~l~~~~i~vd~i~~~~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G 389 (446)
T 3tvi_A 311 EVGFCRKILSILEMYGVSFEHMPSGV-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG 389 (446)
T ss_dssp STTHHHHHHHHHHTTTCCEEEBCEET-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred cHHHHHHHHHHHHHcCCcEEEEecCC-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence 44566678889999999987664321 111112211110000 000001 1134578999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeC
Q 023778 257 TANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 257 v~a~if~~L~~~~I~V~~isq 277 (277)
+++|+|++|+++||||.||+|
T Consensus 390 vaarif~aLa~~~InI~mIsq 410 (446)
T 3tvi_A 390 IANKIFTALSKENVNIRMIDQ 410 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999997
No 53
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=98.09 E-value=1.7e-06 Score=71.64 Aligned_cols=47 Identities=43% Similarity=0.541 Sum_probs=43.4
Q ss_pred cCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 229 ~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.+.+++|+.++|+++|+|.| |.+.||+++++|+.|+++||+|+||+|
T Consensus 13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 45799999999999999998 889999999999999999999999986
No 54
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=98.08 E-value=1e-06 Score=72.34 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=55.4
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHH
Q 023778 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if 262 (277)
++..+.+..+.++||++...+... ... |...++...-....+.. .....+++.+++++|+++|.||.+.||+++|+|
T Consensus 33 g~~~~if~~La~~~I~vd~I~~s~-~~I-sf~v~~~~~~~~il~~l-~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f 109 (157)
T 3mah_A 33 HFMRKLFEIFEFYQEPVDMVATSE-VGV-SLTIDNDKNLPDIVRAL-SDIGDVTVDKDMVIICIVGDMEWDNVGFEARII 109 (157)
T ss_dssp HHHHHHHHHHHHTTCCCSCEECCS-SEE-EEEESCCTTHHHHHHHH-TTTEEEEEEEEEEEEEEEC------CCHHHHHH
T ss_pred hHHHHHHHHHHHcCCCEEEEEecC-CEE-EEEECChHHHHHHHHHH-hccCeEEEeCCeEEEEEECCCcccCccHHHHHH
Confidence 344567788889999865554332 111 22223221000000011 125788999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeC
Q 023778 263 GAVKDVGANVIMISQ 277 (277)
Q Consensus 263 ~~L~~~~I~V~~isq 277 (277)
++|+ +|||.||+|
T Consensus 110 ~aL~--~Ini~~isq 122 (157)
T 3mah_A 110 NALK--GVPVRMISY 122 (157)
T ss_dssp HTTT--TSCCSEEEE
T ss_pred HHhC--CCCeEEEee
Confidence 9999 999999987
No 55
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=98.01 E-value=3.7e-06 Score=83.10 Aligned_cols=45 Identities=31% Similarity=0.498 Sum_probs=42.8
Q ss_pred ceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 232 v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
...+.+++++|+|++||.||.++||+++|+|++|+++||||.||+
T Consensus 518 ~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis 562 (600)
T 3l76_A 518 DAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA 562 (600)
T ss_dssp TCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred CceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence 357899999999999999999999999999999999999999997
No 56
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=97.92 E-value=9e-06 Score=78.84 Aligned_cols=95 Identities=13% Similarity=0.081 Sum_probs=65.2
Q ss_pred CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC------cchhh-ccCCceeeEeecCeeEEEEecCCCCC
Q 023778 181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN------EDEQI-IDSPVKGFATIDNLALVNVEGTGMAG 253 (277)
Q Consensus 181 ~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~------~~~~~-~~~~v~~i~~~~nia~Isvvg~gm~~ 253 (277)
..++..+.+..+.+++|++....+.. ....-.|........ +.... .-.....+.+++|+++|+++|. |.+
T Consensus 354 ~~g~~~~if~~la~~~I~vd~I~sse-~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~~ 431 (510)
T 2cdq_A 354 QVGFLAKVFSIFEELGISVDVVATSE-VSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQH 431 (510)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEEEET-TEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GGG
T ss_pred cccHHHHHHHHHHHcCCcEEEEEeCC-CeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CCC
Confidence 34566788899999999976664331 112212211110000 00000 0123467899999999999999 999
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeC
Q 023778 254 VPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 254 ~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+||+++|+|++|+++||||.||+|
T Consensus 432 ~~Gvaa~~f~aL~~~~InI~mIsq 455 (510)
T 2cdq_A 432 SSLILERAFHVLYTKGVNVQMISQ 455 (510)
T ss_dssp HHHHHHHHHHHHHHHTCCCSEEEE
T ss_pred ChhHHHHHHHHHHHCCCCEEEEEe
Confidence 999999999999999999999997
No 57
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=97.80 E-value=1.6e-05 Score=75.30 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=63.2
Q ss_pred CcchHHHHHHHHhCCCcEEEEeccCCC-CCe-eEE---eCCCCCCC-c-chh-h-ccCCceeeEeecCeeEEEEecCCCC
Q 023778 182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMI---CRPPVDEN-E-DEQ-I-IDSPVKGFATIDNLALVNVEGTGMA 252 (277)
Q Consensus 182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~G-T~I---~~~~~~~~-~-~~~-~-~~~~v~~i~~~~nia~Isvvg~gm~ 252 (277)
.++..+.+..+.+++|++........+ ..| +.| .+...... . ..+ . ..-....+.+++|+++|+|+|.+|.
T Consensus 276 ~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~ 355 (421)
T 3ab4_A 276 PGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 355 (421)
T ss_dssp TTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGT
T ss_pred ccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcc
Confidence 344557788899999997665421111 013 222 22211000 0 000 0 1113457899999999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEe
Q 023778 253 GVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~is 276 (277)
++||+++|+|++|+++||||.||+
T Consensus 356 ~~~Gv~a~~f~aL~~~~InI~~is 379 (421)
T 3ab4_A 356 SHPGVTAEFMEALRDVNVNIELIS 379 (421)
T ss_dssp SCTTHHHHHHHHHHHTTCCCCEEE
T ss_pred cCccHHHHHHHHHHHCCCCEEEEE
Confidence 999999999999999999999985
No 58
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=97.42 E-value=3.3e-05 Score=73.76 Aligned_cols=44 Identities=25% Similarity=0.410 Sum_probs=40.9
Q ss_pred ceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 232 v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+..+.+++|+++|+++|.||.++||+++|+|++|++ |||.||+|
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsq 420 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICY 420 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEE
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEe
Confidence 457899999999999999999999999999999965 99999987
No 59
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=96.51 E-value=0.0046 Score=49.18 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=49.1
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCe-eEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHH
Q 023778 186 PRTIIPVMRYDIPIVIRNIFNLSVPG-IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGA 264 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~~~~G-T~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~ 264 (277)
.+.+..+.++||++...........| +.+...+.+. .......... .....+++|.+|.++||+++++|++
T Consensus 21 ~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~~-a~~~L~~~G~-------~v~~~svv~v~~~d~pGvla~i~~~ 92 (144)
T 2f06_A 21 TEVTEVLAKENINLSALCIAENADFGILRGIVSDPDK-AYKALKDNHF-------AVNITDVVGISCPNVPGALAKVLGF 92 (144)
T ss_dssp HHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHHH-HHHHHHHTTC-------CEEEEEEEEEEEESSTTHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHHH-HHHHHHHcCC-------eEeeeeEEEEEeCCCCcHHHHHHHH
Confidence 45667778889987655433222346 3454221100 0000000111 1233478888999999999999999
Q ss_pred HHhCCCcE-EEE
Q 023778 265 VKDVGANV-IMI 275 (277)
Q Consensus 265 L~~~~I~V-~~i 275 (277)
|+++|||| .|+
T Consensus 93 L~~~~InI~~~~ 104 (144)
T 2f06_A 93 LSAEGVFIEYMY 104 (144)
T ss_dssp HHHTTCCEEEEE
T ss_pred HHHCCCCEEEEE
Confidence 99999999 444
No 60
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=89.11 E-value=0.53 Score=33.62 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=29.3
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
...|++.|. ++||+++++.+.|+++|+||.-++|
T Consensus 5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~ 38 (91)
T 1zpv_A 5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQ 38 (91)
T ss_dssp EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 356888876 6999999999999999999987764
No 61
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=82.37 E-value=5.8 Score=32.45 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023778 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|++.|+.+.... ++.+ |.+...+.++++++ ...+.|++|-++.+.
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~-----iv~D--------d~~~I~~~l~~a~~--~~DlVittGG~g~~~----------- 76 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGF-----VVMD--------DLDEIGWAFRVALE--VSDLVVSSGGLGPTF----------- 76 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS--------CHHHHHHHHHHHHH--HCSEEEEESCCSSST-----------
T ss_pred HHHHHHHHHHHHCCCEEEEEE-----EeCC--------CHHHHHHHHHHHHh--cCCEEEEcCCCcCCc-----------
Confidence 367789999999999865532 2232 34445567777776 457788877555433
Q ss_pred chHHHHHHHHHhCcc
Q 023778 126 SDFSAAIMGALLRAH 140 (277)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (277)
-|++.-.+|.+++.+
T Consensus 77 ~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 77 DDMTVEGFAKCIGQD 91 (172)
T ss_dssp TCCHHHHHHHHHTCC
T ss_pred ccchHHHHHHHcCCC
Confidence 389999999999954
No 62
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=81.89 E-value=1.2 Score=36.96 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=30.7
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+...|+|.|. ++||++++|.+.|+++|+||.-+.|
T Consensus 92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~ 126 (195)
T 2nyi_A 92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELET 126 (195)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEcee
Confidence 4578999986 5999999999999999999987765
No 63
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=81.53 E-value=1.5 Score=30.70 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=26.2
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
..|.+.+. ++||+++++.+.|++.|+||.-+.
T Consensus 6 ~~l~v~~~---Dr~G~L~~I~~~la~~~inI~~i~ 37 (88)
T 2ko1_A 6 AGIRIVGE---DKNGMTNQITGVISKFDTNIRTIV 37 (88)
T ss_dssp EEEEEEEE---CCTTHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEEEE---CCCcHHHHHHHHHHHCCCCeEEEE
Confidence 34566643 799999999999999999997665
No 64
>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8
Probab=77.17 E-value=2.9 Score=32.93 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=37.8
Q ss_pred eeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 234 GFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 234 ~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
++........|+|.|..=.+..|+++.+-+.|+++||+|-.||
T Consensus 55 ~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iS 97 (134)
T 1zhv_A 55 DVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS 97 (134)
T ss_dssp TSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE
T ss_pred CCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4577888999999987656889999999999999999998886
No 65
>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9
Probab=75.23 E-value=4 Score=32.07 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=35.1
Q ss_pred eEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 235 i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+....+...|++.|..=.+..|+++.+-+.|+++||+|-.+|
T Consensus 65 l~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iS 106 (133)
T 1zvp_A 65 LESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIA 106 (133)
T ss_dssp CCCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEE
T ss_pred CccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEE
Confidence 356778889999886666889999999999999999998886
No 66
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=73.15 E-value=4 Score=33.40 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=29.4
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..+|+|.|. ++||+++++.+.|+++|+||.-+.|
T Consensus 93 ~~~l~v~~~---D~~Gil~~v~~~l~~~~~nI~~~~~ 126 (192)
T 1u8s_A 93 TVEVYVESD---DKLGLTEKFTQFFAQRQIGMASLSA 126 (192)
T ss_dssp EEEEEEEES---CCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEEeC---CCccHHHHHHHHHHHcCCcHHHhhh
Confidence 467888885 5999999999999999999987754
No 67
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=64.05 E-value=24 Score=28.31 Aligned_cols=69 Identities=16% Similarity=0.187 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023778 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|++.|+.+... .++.+ |.+...+.++++++.....+.|++|-.+.+.+
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~---------- 84 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDK-----AIVKE--------NRYAIRAQVSAWIASDDVQVVLITGGTGLTEG---------- 84 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT----------
T ss_pred ccHHHHHHHHHHCCCeEeEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC----------
Confidence 46788999999999986543 22232 34445667777776212567788775554443
Q ss_pred chHHHHHHHHHhC
Q 023778 126 SDFSAAIMGALLR 138 (277)
Q Consensus 126 sD~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 85 -D~t~ea~~~~~~ 96 (172)
T 1mkz_A 85 -DQAPEALLPLFD 96 (172)
T ss_dssp -CCHHHHHGGGCS
T ss_pred -CCHHHHHHHHhc
Confidence 777777777765
No 68
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=61.10 E-value=31 Score=32.02 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|..+..+ .++.+ |.+...+.+++.++ ...+.|++|-.+.+ .-
T Consensus 209 N~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~--~~DlVittGG~s~g-----------~~ 262 (419)
T 2fts_A 209 NRSTLLATIQEHGYPTINL-----GIVGD--------NPDDLLNALNEGIS--RADVIITSGGVSMG-----------EK 262 (419)
T ss_dssp HHHHHHHHHHTTTCCEEEE-----EEECS--------SHHHHHHHHHHHHH--HCSEEEEESCCSSS-----------CC
T ss_pred chHHHHHHHHHCCCEEEEE-----eecCC--------CHHHHHHHHHHHHh--cCCEEEEcCCCcCC-----------Cc
Confidence 5678999999999987653 23333 34455667777766 45677887743322 34
Q ss_pred hHHHHHHHHHhCcceEEEee
Q 023778 127 DFSAAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~t 146 (277)
|++-..+++.++. ++.||.
T Consensus 263 D~t~~al~~~lg~-~~~f~~ 281 (419)
T 2fts_A 263 DYLKQVLDIDLHA-QIHFGR 281 (419)
T ss_dssp HHHHHHHHTTTCC-EEEESE
T ss_pred ccHHHHHHHHcCC-ceEEeE
Confidence 9999999888886 466654
No 69
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=58.38 E-value=36 Score=27.18 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023778 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-|+..+++.|++.|+.+.... ++.+ |.+...+.+..........+.|++|-.+.+.+
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~-----iV~D--------d~~~i~~al~~~~a~~~~DlVittGG~g~~~~---------- 96 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYS-----LVPD--------DKIKILKAFTDALSIDEVDVIISTGGTGYSPT---------- 96 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----EECS--------CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT----------
T ss_pred chHHHHHHHHHHCCCEEEEEE-----EeCC--------CHHHHHHHHHHHHhcCCCCEEEecCCcccCCC----------
Confidence 367789999999999875532 2232 23333445554443224468888775554443
Q ss_pred chHHHHHHHHHhC
Q 023778 126 SDFSAAIMGALLR 138 (277)
Q Consensus 126 sD~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 97 -D~t~ea~~~~~~ 108 (178)
T 3iwt_A 97 -DITVETIRKLFD 108 (178)
T ss_dssp -CCHHHHHGGGCS
T ss_pred -CchHHHHHHhhh
Confidence 666666665543
No 70
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=56.91 E-value=9.8 Score=31.77 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=25.3
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023778 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.|+|. +.+.||+++|+...|++.|+||..++
T Consensus 31 ~LsVl---VeN~pGvLaRItglfsrRG~NI~SLt 61 (193)
T 2fgc_A 31 LVSML---VHNKPGVMRKVANLFARRGFNISSIT 61 (193)
T ss_dssp EEEEE---EECCTTHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEE---ECCCChHHHHHHHHHHHCCceEEEEE
Confidence 45554 34799999999999999999998654
No 71
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=56.65 E-value=35 Score=27.18 Aligned_cols=69 Identities=19% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023778 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|++.|+.+... .++.+ |.+...+.++++++.....+.|++|-.+.+.+
T Consensus 31 sn~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~~---------- 87 (169)
T 1y5e_A 31 KSGQLLHELLKEAGHKVTSY-----EIVKD--------DKESIQQAVLAGYHKEDVDVVLTNGGTGITKR---------- 87 (169)
T ss_dssp HHHHHHHHHHHHHTCEEEEE-----EEECS--------SHHHHHHHHHHHHTCTTCSEEEEECCCSSSTT----------
T ss_pred ChHHHHHHHHHHCCCeEeEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCC----------
Confidence 46788999999999886543 22232 33445566666664113467788775554433
Q ss_pred chHHHHHHHHHhC
Q 023778 126 SDFSAAIMGALLR 138 (277)
Q Consensus 126 sD~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 88 -D~t~ea~~~~~~ 99 (169)
T 1y5e_A 88 -DVTIEAVSALLD 99 (169)
T ss_dssp -CCHHHHHHTTCS
T ss_pred -CCcHHHHHHHcC
Confidence 777777776654
No 72
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=55.05 E-value=42 Score=27.13 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|..+... .++.+ |.+...+.++++++.....+.|++|-.+.+. -
T Consensus 41 n~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~~~~~DlVittGG~s~g~-----------~ 96 (178)
T 2pjk_A 41 SGDIIKQLLIENGHKIIGY-----SLVPD--------DKIKILKAFTDALSIDEVDVIISTGGTGYSP-----------T 96 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHTCTTCCEEEEESCCSSST-----------T
T ss_pred HHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-----------C
Confidence 5678899999999986543 22332 3445566777777521157888877544333 3
Q ss_pred hHHHHHHHHHhC
Q 023778 127 DFSAAIMGALLR 138 (277)
Q Consensus 127 D~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 97 D~t~eal~~~~~ 108 (178)
T 2pjk_A 97 DITVETIRKLFD 108 (178)
T ss_dssp CCHHHHHGGGCS
T ss_pred cchHHHHHHHhc
Confidence 777777777654
No 73
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.06 E-value=40 Score=26.74 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|+.+... .++.+ |.+...+.++++++.....+.|++|-.+.+. -
T Consensus 22 n~~~l~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~-----------~ 77 (164)
T 2is8_A 22 THLAIREVLAGGPFEVAAY-----ELVPD--------EPPMIKKVLRLWADREGLDLILTNGGTGLAP-----------R 77 (164)
T ss_dssp HHHHHHHHHTTSSEEEEEE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST-----------T
T ss_pred hHHHHHHHHHHCCCeEeEE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC-----------C
Confidence 5678889999999876543 22332 3444556777766521346778877555443 3
Q ss_pred hHHHHHHHHHhC
Q 023778 127 DFSAAIMGALLR 138 (277)
Q Consensus 127 D~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 78 D~t~ea~~~~~~ 89 (164)
T 2is8_A 78 DRTPEATRELLD 89 (164)
T ss_dssp CCHHHHHHTTCS
T ss_pred CChHHHHHHHhC
Confidence 777777877654
No 74
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=46.29 E-value=97 Score=28.52 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+.+.|++.|..+..+ .++.+ |.+...+.+++.++ ...+.|++|-.+.+ .-
T Consensus 205 n~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~al~~a~~--~~DlvittGG~s~g-----------~~ 258 (411)
T 1g8l_A 205 NRLAVHLMLEQLGCEVINL-----GIIRD--------DPHALRAAFIEADS--QADVVISSGGVSVG-----------EA 258 (411)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----EEECS--------CHHHHHHHHHHHHH--HCSEEEECSSSCSS-----------SC
T ss_pred chHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHhh--cCCEEEECCCCCCC-----------Cc
Confidence 5678999999999886553 23333 34445567777665 45777888744322 34
Q ss_pred hHHHHHHHHHhCcceEEEe
Q 023778 127 DFSAAIMGALLRAHQVTIW 145 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~ 145 (277)
|++-..++.. | ++.||
T Consensus 259 D~t~~al~~~-G--~i~f~ 274 (411)
T 1g8l_A 259 DYTKTILEEL-G--EIAFW 274 (411)
T ss_dssp SHHHHHHHHH-S--EEEEE
T ss_pred ccHHHHHHhc-C--cEEEE
Confidence 8888888765 6 57777
No 75
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=44.50 E-value=39 Score=26.84 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=29.3
Q ss_pred EEeeccccccccCCCC-CCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEecc
Q 023778 143 TIWTDVDGVYSADPRK-VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205 (277)
Q Consensus 143 ~i~tDV~Gvyt~dP~~-~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~ 205 (277)
.+.+|+||+++..-.. .++.+.+..++..+.. ++..+.+.|+++.|.++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~D~~-------------~L~~Lk~~Gi~~~I~Tg~ 61 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVKDAI-------------GISLLKKSGIEVRLISER 61 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHHHHH-------------HHHHHHHTTCEEEEECSS
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecCcHH-------------HHHHHHHCCCEEEEEeCc
Confidence 5789999999864322 2344566666655442 455555556665555433
No 76
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=44.30 E-value=82 Score=24.97 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|..+.. ..++.+ | +...+.++++++ ....+.|++|-.+.+. -
T Consensus 28 n~~~l~~~l~~~G~~v~~-----~~iv~D--------d-~~i~~al~~a~~-~~~DlVittGG~s~g~-----------~ 81 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQ-----PEVVAD--------G-SPVGEALRKAID-DDVDVILTSGGTGIAP-----------T 81 (164)
T ss_dssp HHHHHHHHHHHTTCEECC-----CEEECS--------S-HHHHHHHHHHHH-TTCSEEEEESCCSSST-----------T
T ss_pred HHHHHHHHHHHCCCEEEE-----EEEeCC--------H-HHHHHHHHHHHh-CCCCEEEECCCCCCCC-----------C
Confidence 567899999999987532 223332 3 455677777764 2457778877544333 3
Q ss_pred hHHHHHHHHHhC
Q 023778 127 DFSAAIMGALLR 138 (277)
Q Consensus 127 D~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 82 D~t~eal~~~~~ 93 (164)
T 3pzy_A 82 DSTPDQTVAVVD 93 (164)
T ss_dssp CCHHHHHHTTCS
T ss_pred ccHHHHHHHHhc
Confidence 777777777654
No 77
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=43.65 E-value=50 Score=26.22 Aligned_cols=67 Identities=9% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHH----HHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceecc
Q 023778 47 SAQMLAAV----VRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (277)
Q Consensus 47 s~~ll~~~----L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lg 122 (277)
++..+++. |++.|+.+... .++.+ |.+...+.++++++. ...+.|++|-.+.+.+
T Consensus 26 n~~~l~~~~~~~l~~~G~~v~~~-----~iv~D--------d~~~I~~~l~~a~~~-~~DlVittGG~g~~~~------- 84 (167)
T 2g2c_A 26 ALPLLQRLMSDELQDYSYELISE-----VVVPE--------GYDTVVEAIATALKQ-GARFIITAGGTGIRAK------- 84 (167)
T ss_dssp HHHHHHHHHCC----CEEEEEEE-----EEECS--------SHHHHHHHHHHHHHT-TCSEEEEESCCSSSTT-------
T ss_pred HHHHHHHhHHhHHHHCCCEEeEE-----EEeCC--------CHHHHHHHHHHHHhC-CCCEEEECCCCCCCCC-------
Confidence 45678888 89888765442 23332 344556677777651 2567788775554443
Q ss_pred CCCchHHHHHHHHHhC
Q 023778 123 RDGSDFSAAIMGALLR 138 (277)
Q Consensus 123 rggsD~~A~~lA~~l~ 138 (277)
|++.-.++..++
T Consensus 85 ----D~t~ea~~~~~~ 96 (167)
T 2g2c_A 85 ----NQTPEATASFIH 96 (167)
T ss_dssp ----CCHHHHHHTTCS
T ss_pred ----cChHHHHHHHhC
Confidence 777777776654
No 78
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=42.64 E-value=1.1e+02 Score=27.30 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=57.4
Q ss_pred CCCeEEeeeCHHHHHHHHhhcC----CcchHHHHHHHHhCC-CcEEEEeccCCCCCeeEEe--CCCCCCCcchhhccCCc
Q 023778 160 SEAVILRTLSYQEAWEMSYFGA----NVLHPRTIIPVMRYD-IPIVIRNIFNLSVPGIMIC--RPPVDENEDEQIIDSPV 232 (277)
Q Consensus 160 ~~a~~i~~is~~e~~~l~~~g~----~v~~p~a~~~a~~~~-i~v~I~n~~~~~~~GT~I~--~~~~~~~~~~~~~~~~v 232 (277)
|+++.++.-|..+|.+++..+. --+-+ -..|..+| .++.-.|..+-..--|++. .+... ....
T Consensus 127 p~~~~v~~~STA~AA~~va~~~~~~~AAIas--~~AA~~Yg~L~il~~~I~D~~~N~TRFlvl~~~~~--------~~~~ 196 (313)
T 3mwb_A 127 PNADYVPGSSTAASAMGLLEDDAPYEAAICA--PLIAAEQPGLNVLAEDIGDNPDAVTRFILVSRPGA--------LPER 196 (313)
T ss_dssp TTCEEEECSCHHHHHHHTTSTTCSCSEEEEC--HHHHHHCTTCEEEESCCCSCTTCEEEEEEEECSCC--------CCCC
T ss_pred CCCEEEEcCcHHHHHHHHHhCCCCCccccCc--HHHHHHcCChhhhhhcccCCCcceeEEEEEecCCC--------CCCC
Confidence 5678888888888877754321 11221 12345678 8887777665444556553 21110 0000
Q ss_pred eeeEeecCeeEEEEecCCCC-CchhHHHHHHHHHHhCCCcEEEE
Q 023778 233 KGFATIDNLALVNVEGTGMA-GVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 233 ~~i~~~~nia~Isvvg~gm~-~~~gv~a~if~~L~~~~I~V~~i 275 (277)
...+.+-|.+. +. +.||-+.++++.|+++|||..-|
T Consensus 197 ----~~~~kTSl~f~---~~~~~pGaL~~~L~~Fa~~gINLtkI 233 (313)
T 3mwb_A 197 ----TGADKTTVVVP---LPEDHPGALMEILDQFASRGVNLSRI 233 (313)
T ss_dssp ----CSSEEEEEEEE---CSSCCTTHHHHHHHHHHTTTCCEEEE
T ss_pred ----CCCCeEEEEEE---eCCCCCCHHHHHHHHHHHCCccEEEE
Confidence 01223333332 33 78999999999999999997654
No 79
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=42.52 E-value=77 Score=29.11 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|..+..+ .++.+ |.+...+.+++.++ ...+.|++|-.+.+ .-
T Consensus 208 N~~~L~~~l~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~a~~--~~DlVittGG~s~g-----------~~ 261 (402)
T 1uz5_A 208 NGRALCDAINELGGEGIFM-----GVARD--------DKESLKALIEKAVN--VGDVVVISGGASGG-----------TK 261 (402)
T ss_dssp HHHHHHHHHHHHTSEEEEE-----EEECS--------SHHHHHHHHHHHHH--HCSEEEEECCC----------------
T ss_pred hHHHHHHHHHhCCCeEEEE-----EEeCC--------CHHHHHHHHHHHhh--CCCEEEEcCCCCCC-----------Cc
Confidence 6778999999999876543 23332 34455667777775 45677887743322 23
Q ss_pred hHHHHHHHHHhCcceEEEe
Q 023778 127 DFSAAIMGALLRAHQVTIW 145 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~ 145 (277)
|++-..++.. | ++.||
T Consensus 262 D~t~~al~~~-G--~~~f~ 277 (402)
T 1uz5_A 262 DLTASVIEEL-G--EVKVH 277 (402)
T ss_dssp CHHHHHHHHH-S--EEEEE
T ss_pred ccHHHHHHhh-C--CEEEe
Confidence 8888888765 6 67777
No 80
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=42.05 E-value=75 Score=25.94 Aligned_cols=78 Identities=15% Similarity=0.204 Sum_probs=49.6
Q ss_pred HHHHhhhcHHH-------HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecC
Q 023778 36 TDFVVGHGELW-------SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG 108 (277)
Q Consensus 36 ~~~v~s~Ge~~-------s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G 108 (277)
+..|+++|.-+ ++..+++.|++.|..+... .++.+ |.+...+.++++++ ....+.|++|
T Consensus 32 rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~-~~~DlVIttG 97 (185)
T 3rfq_A 32 RALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGV-----VAVEA--------DEVDIRNALNTAVI-GGVDLVVSVG 97 (185)
T ss_dssp EEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEE-----EEECS--------CHHHHHHHHHHHHH-TTCSEEEEES
T ss_pred EEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEE-----EEeCC--------CHHHHHHHHHHHHh-CCCCEEEECC
Confidence 34567777555 7889999999999876543 22232 34445566777663 2457888877
Q ss_pred ccccCCCCCceeccCCCchHHHHHHHHHhC
Q 023778 109 FIASTPDNIPTTLKRDGSDFSAAIMGALLR 138 (277)
Q Consensus 109 ~i~~~~~G~~~~lgrggsD~~A~~lA~~l~ 138 (277)
-.+.+.+ |++.-.++..++
T Consensus 98 Gts~g~~-----------D~t~eal~~l~~ 116 (185)
T 3rfq_A 98 GTGVTPR-----------DVTPESTREILD 116 (185)
T ss_dssp CCSSSTT-----------CCHHHHHHTTCS
T ss_pred CCCCCCc-----------ccHHHHHHHHhc
Confidence 5454333 777777776654
No 81
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=37.22 E-value=1.3e+02 Score=23.94 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=40.9
Q ss_pred HHHHHHHHHH---HCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccC
Q 023778 47 SAQMLAAVVR---KNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKR 123 (277)
Q Consensus 47 s~~ll~~~L~---~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgr 123 (277)
++..+++.|+ +.|+.+ .. .++.+ |.+...+.++++++.....+.|++|-.+.+.+
T Consensus 26 n~~~l~~~l~~l~~~G~~v-~~-----~iv~D--------d~~~I~~~l~~~~~~~~~DlVittGG~g~g~~-------- 83 (178)
T 2pbq_A 26 SGKAIIDYLKDVIITPFEV-EY-----RVIPD--------ERDLIEKTLIELADEKGCSLILTTGGTGPAPR-------- 83 (178)
T ss_dssp HHHHHHHHHHHHBCSCCEE-EE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT--------
T ss_pred hHHHHHHHHHHHHhCCCEE-EE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC--------
Confidence 5678888887 899875 32 12232 34445567777665213467788775554443
Q ss_pred CCchHHHHHHHHHhC
Q 023778 124 DGSDFSAAIMGALLR 138 (277)
Q Consensus 124 ggsD~~A~~lA~~l~ 138 (277)
|++.-.++.+++
T Consensus 84 ---D~t~ea~~~~~~ 95 (178)
T 2pbq_A 84 ---DVTPEATEAVCE 95 (178)
T ss_dssp ---CCHHHHHHHHCS
T ss_pred ---CchHHHHHHHhC
Confidence 777777776654
No 82
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=37.09 E-value=1.4e+02 Score=23.49 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=40.4
Q ss_pred HHHHHHHHHHC-----CCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceecc
Q 023778 48 AQMLAAVVRKN-----GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (277)
Q Consensus 48 ~~ll~~~L~~~-----Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lg 122 (277)
+..+++.|.+. |+.+... .++.+ |.+...+.++++++.....+.|++|-.+.+.
T Consensus 27 ~~~l~~~l~~~~~~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVittGG~g~g~-------- 85 (167)
T 1uuy_A 27 GPRAVSVVDSSSEKLGGAKVVAT-----AVVPD--------EVERIKDILQKWSDVDEMDLILTLGGTGFTP-------- 85 (167)
T ss_dssp HHHHHHHHHHTTTTTTSEEEEEE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST--------
T ss_pred HHHHHHHHHhccccCCCcEEeEE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCC--------
Confidence 45677778777 7655432 22232 3444556777766412456778877544333
Q ss_pred CCCchHHHHHHHHHhC
Q 023778 123 RDGSDFSAAIMGALLR 138 (277)
Q Consensus 123 rggsD~~A~~lA~~l~ 138 (277)
-|++.-.++.+++
T Consensus 86 ---~D~t~~a~~~~~~ 98 (167)
T 1uuy_A 86 ---RDVTPEATKKVIE 98 (167)
T ss_dssp ---TCCHHHHHHHHCS
T ss_pred ---CCchHHHHHHHhc
Confidence 3888888888875
No 83
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=36.74 E-value=1.4e+02 Score=24.28 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH---CCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceecc
Q 023778 46 WSAQMLAAVVRK---NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK 122 (277)
Q Consensus 46 ~s~~ll~~~L~~---~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lg 122 (277)
-++..+++.|++ .|..+... .++.+ |.+...+.++++++.....+.|++|-.+.+.
T Consensus 34 ~n~~~L~~~L~~~~~~G~~v~~~-----~iv~D--------d~~~I~~al~~a~~~~~~DlVIttGGtg~g~-------- 92 (189)
T 1jlj_A 34 RSGINLKDLVQDPSLLGGTISAY-----KIVPD--------EIEEIKETLIDWCDEKELNLILTTGGTGFAP-------- 92 (189)
T ss_dssp HHHHHHHHHHHCTTTTCCEEEEE-----EEECS--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSST--------
T ss_pred hHHHHHHHHHhchhcCCcEEEEE-----EEeCC--------CHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC--------
Confidence 356788899988 78775542 22232 3444556677666422346778877545433
Q ss_pred CCCchHHHHHHHHHh
Q 023778 123 RDGSDFSAAIMGALL 137 (277)
Q Consensus 123 rggsD~~A~~lA~~l 137 (277)
-|++.-.++..+
T Consensus 93 ---~D~t~eal~~~~ 104 (189)
T 1jlj_A 93 ---RDVTPEATKEVI 104 (189)
T ss_dssp ---TCCHHHHHHHHC
T ss_pred ---cccHHHHHHHHh
Confidence 377777777665
No 84
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=36.60 E-value=1.2e+02 Score=24.73 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|...... ...++.+ |.+...+.++++++.....+.|++|-.+.+.+
T Consensus 24 n~~~L~~~L~~~G~~~~v~---~~~iV~D--------d~~~I~~al~~a~~~~~~DlVitTGGtg~g~~----------- 81 (195)
T 1di6_A 24 GIPALEEWLTSALTTPFEL---ETRLIPD--------EQAIIEQTLCELVDEMSCHLVLTTGGTGPARR----------- 81 (195)
T ss_dssp HHHHHHHHHHHHBCSCEEE---EEEEEES--------CHHHHHHHHHHHHHTSCCSEEEEESCCSSSTT-----------
T ss_pred HHHHHHHHHHHcCCCCceE---EEEEeCC--------CHHHHHHHHHHHHhcCCCCEEEECCCCCCCCC-----------
Confidence 6678999999999873111 1223333 23445566777665223467788775555444
Q ss_pred hHHHHHHHHHh
Q 023778 127 DFSAAIMGALL 137 (277)
Q Consensus 127 D~~A~~lA~~l 137 (277)
|++--.++..+
T Consensus 82 D~T~ea~~~~~ 92 (195)
T 1di6_A 82 DVTPDATLAVA 92 (195)
T ss_dssp CCHHHHHHHTC
T ss_pred ccHHHHHHHHh
Confidence 66666666554
No 85
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=36.15 E-value=2e+02 Score=24.97 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=57.3
Q ss_pred CCCeEEeeeCHHHHHHHHhhcC-----CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCcee
Q 023778 160 SEAVILRTLSYQEAWEMSYFGA-----NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKG 234 (277)
Q Consensus 160 ~~a~~i~~is~~e~~~l~~~g~-----~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~ 234 (277)
|+++.++.-|..+|.++...+. -+-.+. .|..+|.++.-.|..+-..--|++.--....... ...-.+..
T Consensus 120 p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~---AA~~ygL~il~~~I~D~~~N~TRF~vl~~~~~~~--~~~~~~~~ 194 (283)
T 2qmx_A 120 PQIRAEAAYDTAGSAKMVAESRDKSALAIASKR---AGELYGLDILKENLADEEWNITRFFCIAHENNPD--ISHLKVRP 194 (283)
T ss_dssp TTSEEEECSCHHHHHHHHHHTTCTTEEEEECHH---HHHHTTCEEEESSCSSCCCCEEEEEEEEETTCCC--CTTSSSCC
T ss_pred CCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHH---HHHHcCCceecccCcCCCCCeeeEEEEecCcccc--ccccccCC
Confidence 5677777777777777654321 122222 3456788887776665444456653211000000 00000000
Q ss_pred eEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023778 235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 235 i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
....+.+-|.+.- .+.||.+.++++.|+++|||..-|
T Consensus 195 -~~~~~ktsl~f~~---~~~pGaL~~~L~~Fa~~gINLtkI 231 (283)
T 2qmx_A 195 -DVARQKTSIVFAL---PNEQGSLFRALATFALRGIDLTKI 231 (283)
T ss_dssp -EEEEEEEEEEEEE---ECCTTHHHHHHHHHHTTTCCEEEE
T ss_pred -CCCCceEEEEEEc---CCCCchHHHHHHHHHHcCCCeeEE
Confidence 1112334443332 367999999999999999997654
No 86
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=33.12 E-value=2.1e+02 Score=25.41 Aligned_cols=94 Identities=19% Similarity=0.138 Sum_probs=51.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCC-eEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhc-C-C-CceEEecCccc
Q 023778 36 TDFVVGHGELWSAQMLAAVVRKNGID-CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-S-P-SNTIIATGFIA 111 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~-a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~-~-~-~~VpVv~G~i~ 111 (277)
+|.....||-+|+++++..|...|.+ ...+|...-.+ . +-| +..++.......+.+++.. . . ....|++...
T Consensus 97 QDr~~~~repisak~vA~lL~~~G~drvit~DlH~~qi-q-gfF-~ipvd~l~a~p~l~~~i~~~~~~~~~~vVVspd~- 172 (326)
T 3s5j_B 97 QDKKDKSRAPISAKLVANMLSVAGADHIITMDLHASQI-Q-GFF-DIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDA- 172 (326)
T ss_dssp CCSCTTSSCCCHHHHHHHHHHHHTCSEEEEESCSSGGG-G-GGC-SSCEEEECSHHHHHHHHHHHCTTGGGCEEEESSG-
T ss_pred cCCcCCCCCCEeHHHHHHHHHHcCCCEEEEEeCCChHH-H-hhc-CCceeceEcHHHHHHHHHHhcCcCCCcEEEEECC-
Confidence 45555679999999999999999985 44455554321 1 111 1112211112333333321 1 1 2344443331
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEee
Q 023778 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t 146 (277)
|+=..|..+|..|+..-.++.+
T Consensus 173 -------------Ggv~~A~~lA~~L~~~~~~i~K 194 (326)
T 3s5j_B 173 -------------GGAKRVTSIADRLNVDFALIHK 194 (326)
T ss_dssp -------------GGHHHHHHHHHHHTCEEEEEEE
T ss_pred -------------CchHHHHHHHHHcCCCEEEEEE
Confidence 2355588999999987655543
No 87
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=29.06 E-value=33 Score=32.11 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.0
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEeC
Q 023778 252 AGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.++||++++|-+.|.+++|+|..+-|
T Consensus 367 ~d~~gvl~~i~~~~~~~~isi~~~~q 392 (444)
T 3mtj_A 367 FDRPGVLADITRILADSSISIDAMVQ 392 (444)
T ss_dssp C-CCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCcccHHHHHHHHHHhcCCceeEEee
Confidence 47899999999999999999998766
No 88
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.89 E-value=3.2e+02 Score=23.67 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+. + +.+ .....++-.+.++...+...+.+||+.|- +. ..| .|
T Consensus 39 l~~lv~~li~~Gv~gl~v~Gt-----t-GE~--~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~-----~st-----~~ 99 (304)
T 3cpr_A 39 GREVAAYLVDKGLDSLVLAGT-----T-GES--PTTTAAEKLELLKAVREEVGDRAKLIAGV-GT-----NNT-----RT 99 (304)
T ss_dssp HHHHHHHHHHTTCCEEEESST-----T-TTT--TTSCHHHHHHHHHHHHHHHTTTSEEEEEC-CC-----SCH-----HH
T ss_pred HHHHHHHHHHcCCCEEEECcc-----c-cCh--hhCCHHHHHHHHHHHHHHhCCCCcEEecC-CC-----CCH-----HH
Confidence 345677778889997766543 1 111 12344444455565555446789999884 31 111 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 100 ai~la~~A~~~Gadavlv~~ 119 (304)
T 3cpr_A 100 SVELAEAAASAGADGLLVVT 119 (304)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 24456778998777665
No 89
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=25.68 E-value=48 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.2
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023778 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+...+.+.- .++||+++++-+.|+++||||...
T Consensus 330 ~~~rl~~~h---~d~PGvi~~i~~iL~~~~iNIa~m 362 (404)
T 1sc6_A 330 GGRRLMHIH---ENRPGVLTALNKIFAEQGVNIAAQ 362 (404)
T ss_dssp SSEEEEEEE---ESCTTHHHHHHHHHHHTTCEEEEE
T ss_pred CcceEEEEe---CCCCCHHHHHHHHHHHcCCCHHHh
Confidence 333455553 379999999999999999999543
No 90
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=24.66 E-value=56 Score=30.30 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=27.1
Q ss_pred cCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023778 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 239 ~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.+...|.++- .+.||++++|-+.|+++||||.-.
T Consensus 341 ~~~~r~~~~h---~n~p~~~~~i~~~~~~~~~ni~~~ 374 (416)
T 3k5p_A 341 PTGTRFMHVH---ENRPGILNSLMNVFSHHHINIASQ 374 (416)
T ss_dssp SSSEEEEEEE---CCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEEe---cCCccHHHHHHHHHHHcCCCHHHH
Confidence 3455677663 478999999999999999998643
No 91
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.44 E-value=3.1e+02 Score=23.75 Aligned_cols=80 Identities=19% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+.. +.+ .....++-.+.++...+...+.+||+.|- +.+ .| .|
T Consensus 38 l~~lv~~li~~Gv~gi~v~Gtt------GE~--~~Lt~~Er~~v~~~~~~~~~grvpviaGv-g~~-----~t-----~~ 98 (304)
T 3l21_A 38 AARLANHLVDQGCDGLVVSGTT------GES--PTTTDGEKIELLRAVLEAVGDRARVIAGA-GTY-----DT-----AH 98 (304)
T ss_dssp HHHHHHHHHHTTCSEEEESSTT------TTG--GGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCS-----CH-----HH
T ss_pred HHHHHHHHHHcCCCEEEeCccc------cch--hhCCHHHHHHHHHHHHHHhCCCCeEEEeC-CCC-----CH-----HH
Confidence 3456677788999977765421 111 22334444555666665446789999883 311 11 13
Q ss_pred HHH-HHHHHHhCcceEEEee
Q 023778 128 FSA-AIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~A-~~lA~~l~A~~l~i~t 146 (277)
... +.-|+.+||+-+.+.+
T Consensus 99 ai~la~~a~~~Gadavlv~~ 118 (304)
T 3l21_A 99 SIRLAKACAAEGAHGLLVVT 118 (304)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEECC
Confidence 322 3466778888776664
No 92
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=23.00 E-value=2.6e+02 Score=24.24 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+.. +.+ .....++-.+.++...+...+.+||+.|- +.+ .| .|
T Consensus 34 l~~lv~~li~~Gv~Gl~v~GtT------GE~--~~Ls~eEr~~v~~~~~~~~~grvpViaGv-g~~-----~t-----~~ 94 (303)
T 2wkj_A 34 LRRLVQFNIQQGIDGLYVGGST------GEA--FVQSLSEREQVLEIVAEEAKGKIKLIAHV-GCV-----ST-----AE 94 (303)
T ss_dssp HHHHHHHHHHTTCSEEEESSTT------TTG--GGSCHHHHHHHHHHHHHHHTTTSEEEEEC-CCS-----SH-----HH
T ss_pred HHHHHHHHHHcCCCEEEECeec------cCh--hhCCHHHHHHHHHHHHHHhCCCCcEEEec-CCC-----CH-----HH
Confidence 3456777788999977665431 111 12334444455665555446789999883 311 11 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 95 ai~la~~A~~~Gadavlv~~ 114 (303)
T 2wkj_A 95 SQQLAASAKRYGFDAVSAVT 114 (303)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEecC
Confidence 32 24556778998777665
No 93
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=22.81 E-value=2.7e+02 Score=23.90 Aligned_cols=80 Identities=16% Similarity=0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+.. +.+ .....++-.+.++...+...+.+||+.|- +. ..| .|
T Consensus 23 l~~lv~~li~~Gv~gl~~~Gtt------GE~--~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-g~-----~~t-----~~ 83 (289)
T 2yxg_A 23 LEENINFLIENGVSGIVAVGTT------GES--PTLSHEEHKKVIEKVVDVVNGRVQVIAGA-GS-----NCT-----EE 83 (289)
T ss_dssp HHHHHHHHHHTTCSEEEESSTT------TTG--GGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CC-----SSH-----HH
T ss_pred HHHHHHHHHHCCCCEEEECccc------cCh--hhCCHHHHHHHHHHHHHHhCCCCcEEEeC-CC-----CCH-----HH
Confidence 3456777788999977665431 111 12334444455565555446789999884 31 111 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 84 ai~la~~a~~~Gadavlv~~ 103 (289)
T 2yxg_A 84 AIELSVFAEDVGADAVLSIT 103 (289)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 24556778988777665
No 94
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.47 E-value=2.7e+02 Score=23.98 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=45.2
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
-+-+++.+.+.|+....+.+.. |+ .....++-.+.++...+...+.+||+.|- +. ..| .
T Consensus 23 l~~lv~~li~~Gv~gl~~~Gtt---------GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~-----~~t-----~ 82 (294)
T 2ehh_A 23 LGNLIEFHVDNGTDAILVCGTT---------GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT-GG-----NAT-----H 82 (294)
T ss_dssp HHHHHHHHHTTTCCEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CC-----SCH-----H
T ss_pred HHHHHHHHHHCCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CC-----CCH-----H
Confidence 3456777788899876664421 11 12334444455555555446789999884 31 111 1
Q ss_pred hHH-HHHHHHHhCcceEEEee
Q 023778 127 DFS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~-A~~lA~~l~A~~l~i~t 146 (277)
|.. -+..|+.+||+-+.+.+
T Consensus 83 ~ai~la~~A~~~Gadavlv~~ 103 (294)
T 2ehh_A 83 EAVHLTAHAKEVGADGALVVV 103 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 332 24456778988777665
No 95
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=21.19 E-value=2.5e+02 Score=24.35 Aligned_cols=80 Identities=13% Similarity=0.014 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+.. +.+ .....++-.+.++...+...+.+||+.|- +. ..| .|
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtT------GE~--~~Ls~eEr~~v~~~~~~~~~grvpViaGv-g~-----~~t-----~~ 95 (301)
T 1xky_A 35 TTKLVNYLIDNGTTAIVVGGTT------GES--PTLTSEEKVALYRHVVSVVDKRVPVIAGT-GS-----NNT-----HA 95 (301)
T ss_dssp HHHHHHHHHHTTCCEEEESSTT------TTG--GGSCHHHHHHHHHHHHHHHTTSSCEEEEC-CC-----SCH-----HH
T ss_pred HHHHHHHHHHcCCCEEEECccc------cCh--hhCCHHHHHHHHHHHHHHhCCCceEEeCC-CC-----CCH-----HH
Confidence 3456777788899977665431 111 12334444455565555446789999884 31 111 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 96 ai~la~~A~~~Gadavlv~~ 115 (301)
T 1xky_A 96 SIDLTKKATEVGVDAVMLVA 115 (301)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcC
Confidence 32 24456778988777665
No 96
>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A
Probab=21.10 E-value=55 Score=31.79 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=30.9
Q ss_pred CceeccCCCchHHHHHHHHHhCc----ceEEEeeccccccc
Q 023778 117 IPTTLKRDGSDFSAAIMGALLRA----HQVTIWTDVDGVYS 153 (277)
Q Consensus 117 ~~~~lgrggsD~~A~~lA~~l~A----~~l~i~tDV~Gvyt 153 (277)
.+.++|.||||.-+-++..+|+. -++.|..+|||-+-
T Consensus 174 ~VV~IGIGGS~LGp~~v~eAL~~~~~~~~l~FvsNvDp~~l 214 (574)
T 3hjb_A 174 DVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHM 214 (574)
T ss_dssp EEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSHHHH
T ss_pred eEEEEecccchHHHHHHHHHhhcccCCCeEEEEeCCCHHHH
Confidence 36779999999999999999974 47888899988763
No 97
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=21.00 E-value=67 Score=30.50 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=24.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023778 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
-++++|.+ ..-++..|+..|.++...|+.
T Consensus 146 gIIG~G~I--G~~vA~~l~~~G~~V~~~d~~ 174 (529)
T 1ygy_A 146 GVVGLGRI--GQLVAQRIAAFGAYVVAYDPY 174 (529)
T ss_dssp EEECCSHH--HHHHHHHHHTTTCEEEEECTT
T ss_pred EEEeeCHH--HHHHHHHHHhCCCEEEEECCC
Confidence 37899998 999999999999988777653
No 98
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=20.90 E-value=3.1e+02 Score=23.60 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
-+-+++.+.+.|+....+.+.. |+ .....++-.+.++...+...+.+||+.|- +.+ .| .
T Consensus 26 l~~lv~~li~~Gv~gl~~~Gtt---------GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-g~~-----~t-----~ 85 (294)
T 3b4u_A 26 MIAHARRCLSNGCDSVTLFGTT---------GEGCSVGSRERQAILSSFIAAGIAPSRIVTGV-LVD-----SI-----E 85 (294)
T ss_dssp HHHHHHHHHHTTCSEEEESSTT---------TTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE-CCS-----SH-----H
T ss_pred HHHHHHHHHHcCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-CCc-----cH-----H
Confidence 3456677778899876665421 11 22344445566666666556789999883 311 11 1
Q ss_pred hHH-HHHHHHHhCcceEEEee
Q 023778 127 DFS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~-A~~lA~~l~A~~l~i~t 146 (277)
|.. -+..|+.+||+-+.+.+
T Consensus 86 ~ai~la~~A~~~Gadavlv~~ 106 (294)
T 3b4u_A 86 DAADQSAEALNAGARNILLAP 106 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEEcC
Confidence 332 24456678888776654
No 99
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=20.71 E-value=2.5e+02 Score=24.38 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+..- .+ .....++-.+.++...+...+.+||+.|- +.+ .| .|
T Consensus 35 l~~lv~~li~~Gv~gl~v~GtTG------E~--~~Ls~eEr~~vi~~~~~~~~grvpViaGv-g~~-----st-----~~ 95 (306)
T 1o5k_A 35 YERLVRYQLENGVNALIVLGTTG------ES--PTVNEDEREKLVSRTLEIVDGKIPVIVGA-GTN-----ST-----EK 95 (306)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGG------TG--GGCCHHHHHHHHHHHHHHHTTSSCEEEEC-CCS-----CH-----HH
T ss_pred HHHHHHHHHHcCCCEEEeCcccc------ch--hhCCHHHHHHHHHHHHHHhCCCCeEEEcC-CCc-----cH-----HH
Confidence 34567777888999777654311 10 12333444455555555446789999884 311 11 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 96 ai~la~~A~~~Gadavlv~~ 115 (306)
T 1o5k_A 96 TLKLVKQAEKLGANGVLVVT 115 (306)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 24456778998777765
No 100
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=20.50 E-value=2.5e+02 Score=24.82 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
-+-+++.+.+.|+....+.+.. |+ .....++-.+.++...+...+.+||+.|- +.+ .| .
T Consensus 57 l~~lv~~li~~Gv~Gl~v~GtT---------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv-g~~-----st-----~ 116 (332)
T 2r8w_A 57 FSALIARLDAAEVDSVGILGST---------GIYMYLTREERRRAIEAAATILRGRRTLMAGI-GAL-----RT-----D 116 (332)
T ss_dssp HHHHHHHHHHHTCSEEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE-CCS-----SH-----H
T ss_pred HHHHHHHHHHcCCCEEEECccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CCC-----CH-----H
Confidence 3456677778899977665421 11 22344444555666555446789999883 311 11 1
Q ss_pred hHH-HHHHHHHhCcceEEEee
Q 023778 127 DFS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~-A~~lA~~l~A~~l~i~t 146 (277)
|.. -+..|+.+||+-+.+.+
T Consensus 117 eai~la~~A~~~Gadavlv~~ 137 (332)
T 2r8w_A 117 EAVALAKDAEAAGADALLLAP 137 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 333 24456778988776664
No 101
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=20.48 E-value=2.9e+02 Score=24.52 Aligned_cols=79 Identities=9% Similarity=0.036 Sum_probs=45.5
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
-+-+++.+.+.|+....+.+.. |+ .....++-.+.++...+...+.+||+.|- +. ..| .
T Consensus 54 l~~lv~~li~~Gv~Gl~v~GtT---------GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGv-g~-----~st-----~ 113 (343)
T 2v9d_A 54 TAALIDDLIKAGVDGLFFLGSG---------GEFSQLGAEERKAIARFAIDHVDRRVPVLIGT-GG-----TNA-----R 113 (343)
T ss_dssp HHHHHHHHHHTTCSCEEESSTT---------TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-CS-----SCH-----H
T ss_pred HHHHHHHHHHcCCCEEEeCccc---------cChhhCCHHHHHHHHHHHHHHhCCCCcEEEec-CC-----CCH-----H
Confidence 3456777778899876664421 11 22334444455565555446789999873 31 111 1
Q ss_pred hHH-HHHHHHHhCcceEEEee
Q 023778 127 DFS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~-A~~lA~~l~A~~l~i~t 146 (277)
|.. -+..|+.+||+-+.+.+
T Consensus 114 eai~la~~A~~~Gadavlv~~ 134 (343)
T 2v9d_A 114 ETIELSQHAQQAGADGIVVIN 134 (343)
T ss_dssp HHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 332 24457778998877765
No 102
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=20.30 E-value=3.3e+02 Score=23.33 Aligned_cols=79 Identities=6% Similarity=-0.036 Sum_probs=45.1
Q ss_pred HHHHHHHHH-CCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 49 QMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 49 ~ll~~~L~~-~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
+-+++.+.+ .|+....+.+..- .+ .....++-.+.++...+...+.+||+.|- +.+ .| .|
T Consensus 27 ~~lv~~li~~~Gv~gl~~~GttG------E~--~~Ls~~Er~~v~~~~~~~~~grvpviaGv-g~~-----~t-----~~ 87 (293)
T 1f6k_A 27 RQIIRHNIDKMKVDGLYVGGSTG------EN--FMLSTEEKKEIFRIAKDEAKDQIALIAQV-GSV-----NL-----KE 87 (293)
T ss_dssp HHHHHHHHHTSCCSEEEESSGGG------TG--GGSCHHHHHHHHHHHHHHHTTSSEEEEEC-CCS-----CH-----HH
T ss_pred HHHHHHHHhhCCCcEEEeCcccc------ch--hhCCHHHHHHHHHHHHHHhCCCCeEEEec-CCC-----CH-----HH
Confidence 456677777 8999777654311 10 12334444455565555446789999884 311 11 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 88 ai~la~~a~~~Gadavlv~~ 107 (293)
T 1f6k_A 88 AVELGKYATELGYDCLSAVT 107 (293)
T ss_dssp HHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 32 24456778998777665
No 103
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=20.10 E-value=2.7e+02 Score=23.95 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023778 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+-+++.+.+.|+....+.+..- .+ .....++-.+.++...+...+.+||+.|- +.+ .| .|
T Consensus 24 l~~lv~~li~~Gv~gl~~~GttG------E~--~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gv-g~~-----~t-----~~ 84 (291)
T 3a5f_A 24 LSELIEWHIKSKTDAIIVCGTTG------EA--TTMTETERKETIKFVIDKVNKRIPVIAGT-GSN-----NT-----AA 84 (291)
T ss_dssp HHHHHHHHHHTTCCEEEESSGGG------TG--GGSCHHHHHHHHHHHHHHHTTSSCEEEEC-CCS-----SH-----HH
T ss_pred HHHHHHHHHHcCCCEEEECcccc------Ch--hhCCHHHHHHHHHHHHHHhCCCCcEEEeC-Ccc-----cH-----HH
Confidence 34567777889999777654311 10 12333444455555555446789999884 311 11 13
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023778 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. -+..|+.+||+-+.+.+
T Consensus 85 ai~la~~a~~~Gadavlv~~ 104 (291)
T 3a5f_A 85 SIAMSKWAESIGVDGLLVIT 104 (291)
T ss_dssp HHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHhcCCCEEEEcC
Confidence 32 34456778998777665
Done!