Query 023779
Match_columns 277
No_of_seqs 197 out of 2904
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:36:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 8.8E-36 1.9E-40 238.6 18.0 204 20-227 1-204 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 3.9E-34 8.5E-39 227.1 22.0 195 20-220 1-195 (196)
3 COG1159 Era GTPase [General fu 99.9 7.2E-26 1.6E-30 182.4 16.3 179 18-222 5-184 (298)
4 TIGR00991 3a0901s02IAP34 GTP-b 99.9 3E-22 6.5E-27 165.1 20.7 192 14-210 33-245 (313)
5 TIGR00993 3a0901s04IAP86 chlor 99.9 5.1E-22 1.1E-26 175.9 18.9 165 16-184 115-287 (763)
6 TIGR00436 era GTP-binding prot 99.9 1.4E-21 3E-26 162.5 15.5 173 21-220 2-174 (270)
7 PRK00089 era GTPase Era; Revie 99.9 3.6E-21 7.8E-26 162.1 15.0 177 19-220 5-181 (292)
8 COG1160 Predicted GTPases [Gen 99.9 1.1E-20 2.4E-25 160.8 15.3 162 20-209 4-165 (444)
9 PF02421 FeoB_N: Ferrous iron 99.9 6.4E-21 1.4E-25 143.2 12.3 156 20-204 1-156 (156)
10 PRK15494 era GTPase Era; Provi 99.9 5.1E-20 1.1E-24 157.3 18.2 176 18-220 51-226 (339)
11 cd01853 Toc34_like Toc34-like 99.9 5.6E-20 1.2E-24 149.8 17.2 133 16-152 28-164 (249)
12 COG0218 Predicted GTPase [Gene 99.8 1.8E-18 3.8E-23 132.7 18.1 173 15-210 20-198 (200)
13 PRK12298 obgE GTPase CgtA; Rev 99.8 3E-18 6.5E-23 148.2 19.0 176 21-221 161-344 (390)
14 cd01895 EngA2 EngA2 subfamily. 99.8 2.6E-18 5.7E-23 133.2 16.9 172 19-207 2-173 (174)
15 cd04171 SelB SelB subfamily. 99.8 3.5E-18 7.5E-23 131.5 17.2 157 21-206 2-163 (164)
16 cd04163 Era Era subfamily. Er 99.8 1.8E-18 3.9E-23 133.2 15.2 164 19-207 3-167 (168)
17 PRK00093 GTP-binding protein D 99.8 8.1E-18 1.8E-22 149.4 21.1 176 18-212 172-347 (435)
18 COG3596 Predicted GTPase [Gene 99.8 1.7E-18 3.7E-23 138.0 14.7 186 18-220 38-233 (296)
19 COG1160 Predicted GTPases [Gen 99.8 1.8E-18 4E-23 147.3 15.6 191 18-226 177-368 (444)
20 TIGR03594 GTPase_EngA ribosome 99.8 8.1E-18 1.8E-22 149.2 20.5 177 18-212 171-347 (429)
21 PF01926 MMR_HSR1: 50S ribosom 99.8 1.5E-18 3.3E-23 125.9 12.9 116 21-146 1-116 (116)
22 cd01897 NOG NOG1 is a nucleola 99.8 6.8E-18 1.5E-22 130.6 17.0 163 20-208 1-167 (168)
23 cd01886 EF-G Elongation factor 99.8 2E-18 4.4E-23 142.7 14.2 215 21-269 1-239 (270)
24 PRK03003 GTP-binding protein D 99.8 1.6E-17 3.5E-22 148.3 20.9 188 18-226 210-399 (472)
25 cd01898 Obg Obg subfamily. Th 99.8 6E-18 1.3E-22 131.1 15.8 164 21-207 2-169 (170)
26 TIGR03598 GTPase_YsxC ribosome 99.8 8.8E-18 1.9E-22 131.4 16.8 144 15-175 14-160 (179)
27 PRK00454 engB GTP-binding prot 99.8 2.6E-17 5.7E-22 130.5 19.8 172 16-210 21-195 (196)
28 cd01894 EngA1 EngA1 subfamily. 99.8 4.6E-18 1E-22 129.8 14.6 155 23-207 1-156 (157)
29 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.3E-17 2.8E-22 127.3 16.5 155 20-208 2-156 (157)
30 TIGR03594 GTPase_EngA ribosome 99.8 9.9E-18 2.1E-22 148.7 17.5 161 21-210 1-161 (429)
31 PRK12299 obgE GTPase CgtA; Rev 99.8 4.8E-17 1E-21 138.2 19.9 167 21-210 160-329 (335)
32 cd01864 Rab19 Rab19 subfamily. 99.8 3.1E-17 6.7E-22 126.6 17.0 159 19-207 3-164 (165)
33 PRK03003 GTP-binding protein D 99.8 2E-17 4.4E-22 147.7 17.9 164 18-210 37-200 (472)
34 KOG0084 GTPase Rab1/YPT1, smal 99.8 1.6E-17 3.4E-22 125.7 14.5 164 19-212 9-175 (205)
35 cd01878 HflX HflX subfamily. 99.8 1.4E-17 3E-22 133.1 15.2 163 18-207 40-203 (204)
36 cd04119 RJL RJL (RabJ-Like) su 99.8 3E-17 6.5E-22 126.7 16.2 160 20-208 1-166 (168)
37 cd01865 Rab3 Rab3 subfamily. 99.8 3.6E-17 7.8E-22 126.2 16.3 159 20-209 2-163 (165)
38 cd04122 Rab14 Rab14 subfamily. 99.8 4.7E-17 1E-21 125.7 16.6 157 20-208 3-163 (166)
39 cd01867 Rab8_Rab10_Rab13_like 99.8 5.3E-17 1.2E-21 125.5 16.9 160 19-209 3-165 (167)
40 cd01888 eIF2_gamma eIF2-gamma 99.8 2.1E-17 4.6E-22 131.7 14.9 166 20-210 1-200 (203)
41 cd04121 Rab40 Rab40 subfamily. 99.8 7.5E-17 1.6E-21 126.8 17.8 163 19-213 6-171 (189)
42 PRK05291 trmE tRNA modificatio 99.8 4.6E-17 9.9E-22 144.0 18.2 158 18-210 214-371 (449)
43 cd00881 GTP_translation_factor 99.8 1.6E-17 3.4E-22 130.8 13.7 165 21-209 1-187 (189)
44 cd04142 RRP22 RRP22 subfamily. 99.8 1.4E-16 2.9E-21 126.4 19.0 174 20-214 1-179 (198)
45 cd04112 Rab26 Rab26 subfamily. 99.8 5.7E-17 1.2E-21 128.1 16.8 162 20-211 1-165 (191)
46 PF00009 GTP_EFTU: Elongation 99.8 3E-17 6.4E-22 129.4 15.0 168 18-209 2-187 (188)
47 cd04120 Rab12 Rab12 subfamily. 99.8 8.6E-17 1.9E-21 127.6 17.5 159 21-210 2-164 (202)
48 cd01866 Rab2 Rab2 subfamily. 99.8 7.2E-17 1.6E-21 124.9 16.6 159 20-209 5-166 (168)
49 PLN03071 GTP-binding nuclear p 99.8 8.4E-17 1.8E-21 129.7 17.6 159 17-210 11-173 (219)
50 PRK00093 GTP-binding protein D 99.8 3.4E-17 7.4E-22 145.4 16.7 158 20-206 2-159 (435)
51 cd04124 RabL2 RabL2 subfamily. 99.8 5.6E-17 1.2E-21 124.6 15.6 155 20-210 1-159 (161)
52 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 4.7E-17 1E-21 125.7 15.3 158 21-208 2-165 (168)
53 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 4.9E-17 1.1E-21 125.3 15.1 162 22-206 2-163 (164)
54 COG1084 Predicted GTPase [Gene 99.8 5.3E-17 1.2E-21 132.5 15.9 129 14-152 163-295 (346)
55 cd04154 Arl2 Arl2 subfamily. 99.8 3.5E-17 7.6E-22 127.3 14.3 158 14-205 9-171 (173)
56 PRK09518 bifunctional cytidyla 99.8 1.7E-16 3.6E-21 148.2 21.4 175 18-213 449-625 (712)
57 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 5.6E-17 1.2E-21 125.8 15.3 161 21-210 2-166 (170)
58 cd04113 Rab4 Rab4 subfamily. 99.8 5.4E-17 1.2E-21 124.6 15.1 156 20-206 1-159 (161)
59 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.4E-17 5.2E-22 127.3 13.1 161 21-205 1-165 (167)
60 TIGR02729 Obg_CgtA Obg family 99.8 1E-16 2.2E-21 136.1 18.0 166 20-208 158-328 (329)
61 cd04140 ARHI_like ARHI subfami 99.7 8.1E-17 1.7E-21 124.3 15.9 160 20-207 2-163 (165)
62 TIGR03156 GTP_HflX GTP-binding 99.7 5.2E-17 1.1E-21 139.0 16.2 162 18-207 188-350 (351)
63 cd01861 Rab6 Rab6 subfamily. 99.7 6.9E-17 1.5E-21 124.0 15.4 157 20-207 1-160 (161)
64 cd04104 p47_IIGP_like p47 (47- 99.7 1.2E-16 2.6E-21 126.7 17.2 171 20-210 2-185 (197)
65 cd04109 Rab28 Rab28 subfamily. 99.7 7.8E-17 1.7E-21 129.7 16.3 163 20-210 1-167 (215)
66 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 9.1E-17 2E-21 124.0 16.0 159 20-209 3-164 (166)
67 smart00175 RAB Rab subfamily o 99.7 1E-16 2.2E-21 123.4 16.1 159 20-209 1-162 (164)
68 cd01860 Rab5_related Rab5-rela 99.7 1.1E-16 2.4E-21 123.1 16.2 158 20-208 2-162 (163)
69 COG0486 ThdF Predicted GTPase 99.7 3.8E-16 8.2E-21 133.7 20.8 168 13-211 211-378 (454)
70 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 2.5E-16 5.5E-21 122.3 18.2 160 20-210 3-165 (172)
71 cd04110 Rab35 Rab35 subfamily. 99.7 1.2E-16 2.5E-21 127.2 16.5 160 19-210 6-168 (199)
72 cd04127 Rab27A Rab27a subfamil 99.7 1.8E-16 4E-21 124.0 17.3 162 19-209 4-177 (180)
73 COG0370 FeoB Fe2+ transport sy 99.7 3.5E-16 7.6E-21 139.3 20.9 166 19-213 3-168 (653)
74 PRK09518 bifunctional cytidyla 99.7 1.2E-16 2.5E-21 149.2 18.7 164 18-210 274-437 (712)
75 cd01868 Rab11_like Rab11-like. 99.7 2.3E-16 4.9E-21 121.6 17.4 158 20-208 4-164 (165)
76 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.2E-16 2.5E-21 123.1 15.5 159 19-208 2-163 (164)
77 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 6.1E-16 1.3E-20 124.9 20.2 172 14-210 8-189 (232)
78 cd04170 EF-G_bact Elongation f 99.7 3.9E-17 8.5E-22 135.8 13.5 215 21-269 1-237 (268)
79 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.4E-16 3.1E-21 126.9 16.2 160 20-210 1-169 (201)
80 PLN03110 Rab GTPase; Provision 99.7 2.2E-16 4.8E-21 127.0 17.4 162 18-210 11-175 (216)
81 cd04144 Ras2 Ras2 subfamily. 99.7 1.1E-16 2.4E-21 126.4 15.3 160 21-210 1-164 (190)
82 cd04158 ARD1 ARD1 subfamily. 99.7 7.3E-17 1.6E-21 125.0 14.0 159 21-210 1-162 (169)
83 TIGR00450 mnmE_trmE_thdF tRNA 99.7 7.3E-16 1.6E-20 135.7 21.9 123 17-150 201-323 (442)
84 cd04149 Arf6 Arf6 subfamily. 99.7 7.6E-17 1.6E-21 124.7 13.8 154 19-206 9-167 (168)
85 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.5E-16 3.3E-21 122.0 15.3 157 20-208 2-161 (162)
86 PRK09554 feoB ferrous iron tra 99.7 8.3E-16 1.8E-20 143.2 23.0 180 19-225 3-186 (772)
87 smart00173 RAS Ras subfamily o 99.7 1.3E-16 2.9E-21 122.8 14.9 158 21-209 2-162 (164)
88 PRK04213 GTP-binding protein; 99.7 3.3E-16 7.2E-21 124.8 17.5 168 18-210 8-193 (201)
89 cd04136 Rap_like Rap-like subf 99.7 1.7E-16 3.7E-21 122.0 15.2 157 20-207 2-161 (163)
90 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.6E-16 5.6E-21 121.2 16.2 157 20-208 1-163 (164)
91 cd04125 RabA_like RabA-like su 99.7 2.6E-16 5.7E-21 124.0 16.4 160 20-210 1-163 (188)
92 cd01893 Miro1 Miro1 subfamily. 99.7 2.7E-16 5.9E-21 121.4 16.1 159 21-208 2-163 (166)
93 cd01850 CDC_Septin CDC/Septin. 99.7 2.1E-16 4.6E-21 131.2 16.3 153 20-185 5-184 (276)
94 cd01879 FeoB Ferrous iron tran 99.7 1.9E-16 4E-21 121.1 14.7 156 24-208 1-156 (158)
95 cd01884 EF_Tu EF-Tu subfamily. 99.7 2.9E-16 6.3E-21 123.8 15.9 136 19-177 2-152 (195)
96 cd04175 Rap1 Rap1 subgroup. T 99.7 2E-16 4.3E-21 121.9 14.7 158 20-208 2-162 (164)
97 cd04123 Rab21 Rab21 subfamily. 99.7 3.6E-16 7.9E-21 119.9 16.1 158 20-208 1-161 (162)
98 smart00177 ARF ARF-like small 99.7 1.9E-16 4.1E-21 123.4 14.6 159 19-208 13-173 (175)
99 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 3E-16 6.5E-21 123.1 15.7 164 19-209 3-170 (183)
100 PRK12297 obgE GTPase CgtA; Rev 99.7 4E-16 8.6E-21 135.8 17.9 166 21-211 160-329 (424)
101 cd00877 Ran Ran (Ras-related n 99.7 1.6E-16 3.4E-21 122.8 13.8 156 20-210 1-160 (166)
102 cd01876 YihA_EngB The YihA (En 99.7 6.7E-16 1.4E-20 119.0 17.4 163 22-207 2-169 (170)
103 PTZ00133 ADP-ribosylation fact 99.7 2.5E-16 5.3E-21 123.5 15.1 162 17-210 15-179 (182)
104 cd04106 Rab23_lke Rab23-like s 99.7 3.2E-16 7E-21 120.4 15.5 156 20-206 1-160 (162)
105 cd04156 ARLTS1 ARLTS1 subfamil 99.7 8.3E-17 1.8E-21 123.4 12.2 157 21-206 1-159 (160)
106 cd04117 Rab15 Rab15 subfamily. 99.7 2.6E-16 5.6E-21 120.9 14.7 154 21-207 2-160 (161)
107 PRK12296 obgE GTPase CgtA; Rev 99.7 4.3E-16 9.3E-21 137.3 18.0 169 20-211 160-342 (500)
108 PLN00223 ADP-ribosylation fact 99.7 2.8E-16 6.2E-21 123.0 15.0 160 17-209 15-178 (181)
109 cd04128 Spg1 Spg1p. Spg1p (se 99.7 4.6E-16 9.9E-21 121.9 16.2 162 20-210 1-167 (182)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.7 1.9E-16 4.2E-21 121.4 13.7 155 20-205 1-157 (159)
111 cd04132 Rho4_like Rho4-like su 99.7 5.2E-16 1.1E-20 122.2 16.4 162 20-210 1-168 (187)
112 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.5E-16 3.3E-21 127.3 13.5 155 21-199 1-184 (208)
113 cd04134 Rho3 Rho3 subfamily. 99.7 2.1E-16 4.6E-21 124.6 14.2 165 20-210 1-175 (189)
114 cd04155 Arl3 Arl3 subfamily. 99.7 1.6E-16 3.5E-21 123.5 13.2 159 17-206 12-172 (173)
115 PLN03118 Rab family protein; P 99.7 9.1E-16 2E-20 123.2 17.9 167 13-210 8-178 (211)
116 cd01874 Cdc42 Cdc42 subfamily. 99.7 5.4E-16 1.2E-20 120.8 16.1 162 20-207 2-173 (175)
117 cd01890 LepA LepA subfamily. 99.7 1.1E-16 2.3E-21 125.1 12.2 160 20-209 1-177 (179)
118 cd00154 Rab Rab family. Rab G 99.7 4.4E-16 9.5E-21 118.7 15.2 154 20-205 1-158 (159)
119 cd01891 TypA_BipA TypA (tyrosi 99.7 6.2E-16 1.4E-20 122.5 16.6 117 19-152 2-132 (194)
120 cd01889 SelB_euk SelB subfamil 99.7 2.2E-16 4.9E-21 124.8 14.0 169 20-210 1-187 (192)
121 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.6E-15 3.4E-20 118.7 18.5 165 18-207 4-178 (182)
122 cd04157 Arl6 Arl6 subfamily. 99.7 1.7E-16 3.7E-21 121.9 12.8 158 21-205 1-160 (162)
123 cd04116 Rab9 Rab9 subfamily. 99.7 5.1E-16 1.1E-20 120.3 15.5 160 18-206 4-168 (170)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.7 2.7E-16 5.8E-21 120.4 13.7 156 21-206 1-157 (158)
125 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.2E-16 7E-21 122.0 14.4 155 19-205 15-172 (174)
126 cd04118 Rab24 Rab24 subfamily. 99.7 4.5E-16 9.8E-21 123.2 15.1 163 20-210 1-167 (193)
127 cd01863 Rab18 Rab18 subfamily. 99.7 5.9E-16 1.3E-20 118.8 15.3 157 20-207 1-160 (161)
128 cd04111 Rab39 Rab39 subfamily. 99.7 8.4E-16 1.8E-20 123.2 16.7 161 20-210 3-167 (211)
129 PRK11058 GTPase HflX; Provisio 99.7 9.8E-16 2.1E-20 134.2 18.5 165 20-210 198-363 (426)
130 KOG1423 Ras-like GTPase ERA [C 99.7 3E-16 6.6E-21 126.5 13.8 196 18-220 71-281 (379)
131 cd01881 Obg_like The Obg-like 99.7 3.6E-16 7.7E-21 121.7 13.9 162 24-207 1-175 (176)
132 cd04151 Arl1 Arl1 subfamily. 99.7 2.6E-16 5.6E-21 120.5 12.8 155 21-206 1-157 (158)
133 cd04114 Rab30 Rab30 subfamily. 99.7 7.7E-16 1.7E-20 119.1 15.5 157 20-207 8-167 (169)
134 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.2E-15 2.7E-20 118.2 16.5 158 20-208 3-168 (170)
135 cd01862 Rab7 Rab7 subfamily. 99.7 1.5E-15 3.2E-20 117.8 16.8 162 20-210 1-168 (172)
136 cd04131 Rnd Rnd subfamily. Th 99.7 2.9E-15 6.3E-20 116.8 18.5 163 20-207 2-174 (178)
137 PTZ00369 Ras-like protein; Pro 99.7 7.5E-16 1.6E-20 121.5 15.3 161 19-210 5-168 (189)
138 cd04146 RERG_RasL11_like RERG/ 99.7 4.4E-16 9.6E-21 120.1 13.6 159 21-208 1-163 (165)
139 cd04168 TetM_like Tet(M)-like 99.7 5E-16 1.1E-20 126.3 14.4 190 21-269 1-206 (237)
140 cd01875 RhoG RhoG subfamily. 99.7 2.4E-15 5.2E-20 118.8 17.9 167 19-210 3-178 (191)
141 smart00178 SAR Sar1p-like memb 99.7 2.7E-16 5.8E-21 123.5 12.1 166 17-206 15-182 (184)
142 cd04159 Arl10_like Arl10-like 99.7 3.5E-16 7.6E-21 119.3 12.5 155 22-206 2-158 (159)
143 PRK10512 selenocysteinyl-tRNA- 99.7 7.4E-16 1.6E-20 140.6 16.7 165 21-210 2-167 (614)
144 cd04133 Rop_like Rop subfamily 99.7 8.5E-16 1.8E-20 119.5 14.6 165 20-208 2-172 (176)
145 smart00174 RHO Rho (Ras homolo 99.7 1.5E-15 3.2E-20 118.1 15.8 162 22-208 1-171 (174)
146 KOG0078 GTP-binding protein SE 99.7 8.1E-16 1.7E-20 118.2 13.7 164 15-209 8-174 (207)
147 cd00157 Rho Rho (Ras homology) 99.7 7.8E-16 1.7E-20 119.2 14.0 161 20-206 1-170 (171)
148 TIGR02528 EutP ethanolamine ut 99.7 4.2E-16 9.1E-21 117.2 11.7 139 21-205 2-141 (142)
149 PLN03108 Rab family protein; P 99.7 3.3E-15 7.2E-20 119.7 17.3 159 19-208 6-167 (210)
150 cd00880 Era_like Era (E. coli 99.7 2.7E-15 5.9E-20 114.2 16.2 162 24-207 1-162 (163)
151 cd04139 RalA_RalB RalA/RalB su 99.7 2.7E-15 5.9E-20 115.3 16.3 159 20-209 1-162 (164)
152 cd00879 Sar1 Sar1 subfamily. 99.7 9E-16 1.9E-20 121.2 13.7 168 17-207 17-189 (190)
153 cd04126 Rab20 Rab20 subfamily. 99.7 2.2E-15 4.7E-20 121.0 15.9 113 20-151 1-114 (220)
154 cd04169 RF3 RF3 subfamily. Pe 99.7 5.8E-16 1.3E-20 128.0 12.9 117 19-152 2-138 (267)
155 TIGR00487 IF-2 translation ini 99.7 1.9E-15 4.1E-20 137.0 17.3 162 18-206 86-247 (587)
156 PRK15467 ethanolamine utilizat 99.7 5.3E-16 1.1E-20 118.6 11.3 145 20-210 2-148 (158)
157 TIGR00475 selB selenocysteine- 99.7 2.9E-15 6.2E-20 136.4 18.0 166 20-210 1-167 (581)
158 cd04176 Rap2 Rap2 subgroup. T 99.7 1.2E-15 2.6E-20 117.4 13.4 156 20-207 2-161 (163)
159 cd01871 Rac1_like Rac1-like su 99.7 4E-15 8.6E-20 115.8 16.2 162 20-206 2-172 (174)
160 KOG0394 Ras-related GTPase [Ge 99.7 1.2E-15 2.6E-20 114.0 12.5 167 18-210 8-179 (210)
161 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.7 7.9E-15 1.7E-19 117.8 18.0 164 20-208 2-175 (222)
162 cd04148 RGK RGK subfamily. Th 99.7 3.6E-15 7.8E-20 120.4 16.0 161 20-210 1-164 (221)
163 cd01870 RhoA_like RhoA-like su 99.7 2.6E-15 5.7E-20 116.9 14.7 163 20-207 2-173 (175)
164 cd04161 Arl2l1_Arl13_like Arl2 99.7 2E-15 4.2E-20 116.7 13.8 157 21-205 1-165 (167)
165 cd04135 Tc10 TC10 subfamily. 99.7 5.5E-15 1.2E-19 114.9 16.4 163 20-207 1-172 (174)
166 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.6E-15 5.5E-20 121.0 14.9 165 21-207 1-221 (224)
167 PRK09866 hypothetical protein; 99.7 2.8E-15 6.1E-20 133.2 16.3 121 69-206 230-350 (741)
168 KOG0092 GTPase Rab5/YPT51 and 99.7 1.3E-15 2.9E-20 114.9 12.2 162 19-211 5-169 (200)
169 PF10662 PduV-EutP: Ethanolami 99.7 6E-16 1.3E-20 113.7 9.9 141 20-205 2-142 (143)
170 cd04147 Ras_dva Ras-dva subfam 99.7 4.2E-15 9.2E-20 118.1 15.6 158 21-209 1-163 (198)
171 cd04137 RheB Rheb (Ras Homolog 99.7 6E-15 1.3E-19 115.4 16.1 162 20-212 2-166 (180)
172 cd01892 Miro2 Miro2 subfamily. 99.7 3.7E-15 7.9E-20 115.4 14.6 162 18-209 3-166 (169)
173 PRK05306 infB translation init 99.7 2.4E-15 5.3E-20 139.5 15.9 159 17-206 288-449 (787)
174 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.5E-14 3.4E-19 114.5 18.1 171 20-208 1-196 (202)
175 COG2262 HflX GTPases [General 99.7 3.4E-15 7.3E-20 125.7 14.8 166 18-210 191-357 (411)
176 cd04143 Rhes_like Rhes_like su 99.7 7.4E-15 1.6E-19 120.2 16.1 159 20-209 1-171 (247)
177 cd00876 Ras Ras family. The R 99.7 7.8E-15 1.7E-19 112.2 15.4 156 21-207 1-159 (160)
178 TIGR00484 EF-G translation elo 99.6 3.1E-15 6.8E-20 139.3 15.1 217 15-265 6-246 (689)
179 CHL00189 infB translation init 99.6 4.4E-15 9.4E-20 136.7 15.6 162 17-208 242-409 (742)
180 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.1E-14 2.4E-19 110.0 15.0 162 17-210 20-186 (221)
181 cd01896 DRG The developmentall 99.6 2.3E-14 5.1E-19 116.3 18.1 87 21-114 2-88 (233)
182 cd04177 RSR1 RSR1 subgroup. R 99.6 8.9E-15 1.9E-19 113.2 14.9 157 20-207 2-162 (168)
183 cd04130 Wrch_1 Wrch-1 subfamil 99.6 4.2E-15 9.1E-20 115.6 12.9 161 20-205 1-170 (173)
184 COG5019 CDC3 Septin family pro 99.6 6.4E-13 1.4E-17 110.6 25.9 150 19-181 23-199 (373)
185 PRK12735 elongation factor Tu; 99.6 1.5E-14 3.1E-19 126.5 17.2 166 17-209 10-203 (396)
186 smart00176 RAN Ran (Ras-relate 99.6 6.9E-15 1.5E-19 116.6 13.8 151 25-210 1-155 (200)
187 TIGR00231 small_GTP small GTP- 99.6 2E-14 4.3E-19 109.3 15.7 154 20-205 2-160 (161)
188 KOG0079 GTP-binding protein H- 99.6 5.6E-15 1.2E-19 106.4 11.3 158 20-209 9-169 (198)
189 CHL00071 tufA elongation facto 99.6 2.2E-14 4.7E-19 126.0 17.1 137 17-177 10-162 (409)
190 PRK12317 elongation factor 1-a 99.6 9E-15 2E-19 129.3 14.2 160 18-199 5-195 (425)
191 PRK12736 elongation factor Tu; 99.6 3.5E-14 7.7E-19 124.0 17.6 164 17-209 10-201 (394)
192 PTZ00132 GTP-binding nuclear p 99.6 4E-14 8.6E-19 114.0 16.2 162 15-211 5-170 (215)
193 KOG0095 GTPase Rab30, small G 99.6 2.4E-14 5.2E-19 103.3 13.1 156 20-206 8-166 (213)
194 PF00025 Arf: ADP-ribosylation 99.6 5.1E-15 1.1E-19 115.2 10.1 161 17-207 12-174 (175)
195 cd04129 Rho2 Rho2 subfamily. 99.6 2.3E-14 5E-19 112.8 14.0 165 20-209 2-173 (187)
196 KOG0080 GTPase Rab18, small G 99.6 2.7E-14 5.9E-19 104.4 13.0 118 18-150 10-130 (209)
197 PLN03127 Elongation factor Tu; 99.6 2.5E-14 5.5E-19 126.2 15.6 169 15-209 57-252 (447)
198 cd04103 Centaurin_gamma Centau 99.6 2.7E-14 5.9E-19 109.2 13.8 152 20-206 1-156 (158)
199 PF00071 Ras: Ras family; Int 99.6 8.7E-15 1.9E-19 112.4 11.0 157 21-208 1-160 (162)
200 PF00735 Septin: Septin; Inte 99.6 2.3E-14 5.1E-19 118.9 13.9 154 20-186 5-184 (281)
201 PRK00007 elongation factor G; 99.6 3.2E-14 6.9E-19 132.5 16.3 119 16-152 7-142 (693)
202 PRK12739 elongation factor G; 99.6 5.5E-14 1.2E-18 131.0 17.8 128 16-163 5-148 (691)
203 KOG0087 GTPase Rab11/YPT3, sma 99.6 2.7E-14 6E-19 109.4 12.8 119 17-151 12-133 (222)
204 TIGR01394 TypA_BipA GTP-bindin 99.6 4.6E-14 9.9E-19 128.4 16.1 167 20-211 2-193 (594)
205 cd01873 RhoBTB RhoBTB subfamil 99.6 7.2E-14 1.6E-18 110.5 15.2 161 20-206 3-193 (195)
206 TIGR03680 eif2g_arch translati 99.6 2.9E-14 6.3E-19 125.0 14.1 167 18-210 3-197 (406)
207 PRK00049 elongation factor Tu; 99.6 8.3E-14 1.8E-18 121.7 16.6 169 17-209 10-203 (396)
208 KOG0098 GTPase Rab2, small G p 99.6 1.6E-13 3.5E-18 103.0 15.2 159 19-208 6-167 (216)
209 TIGR00491 aIF-2 translation in 99.6 5.2E-14 1.1E-18 127.5 14.5 115 19-151 4-135 (590)
210 TIGR01393 lepA GTP-binding pro 99.6 1E-13 2.2E-18 126.4 16.3 163 19-211 3-182 (595)
211 cd00882 Ras_like_GTPase Ras-li 99.6 1.2E-13 2.7E-18 103.9 13.8 151 24-205 1-156 (157)
212 TIGR00483 EF-1_alpha translati 99.6 1E-13 2.3E-18 122.6 15.4 160 18-199 6-197 (426)
213 PRK04000 translation initiatio 99.6 8.5E-14 1.8E-18 122.1 14.3 169 17-210 7-202 (411)
214 PRK05124 cysN sulfate adenylyl 99.6 4.8E-14 1E-18 125.5 12.9 141 16-177 24-195 (474)
215 PRK10218 GTP-binding protein; 99.6 1.9E-13 4.2E-18 124.2 16.9 169 18-211 4-197 (607)
216 TIGR02034 CysN sulfate adenyly 99.6 5.4E-14 1.2E-18 123.3 13.0 137 20-177 1-168 (406)
217 PF00350 Dynamin_N: Dynamin fa 99.6 3.2E-14 6.9E-19 110.0 10.2 115 22-147 1-168 (168)
218 TIGR00437 feoB ferrous iron tr 99.6 8.7E-13 1.9E-17 120.4 21.1 154 26-208 1-154 (591)
219 PF08477 Miro: Miro-like prote 99.6 2E-14 4.3E-19 104.6 8.5 116 21-148 1-119 (119)
220 PRK05433 GTP-binding protein L 99.6 1.6E-13 3.4E-18 125.3 16.1 165 17-211 5-186 (600)
221 TIGR00485 EF-Tu translation el 99.6 2.5E-13 5.4E-18 118.9 16.8 121 16-152 9-143 (394)
222 PLN00023 GTP-binding protein; 99.5 1.1E-13 2.3E-18 115.4 13.5 126 15-151 17-165 (334)
223 smart00053 DYNc Dynamin, GTPas 99.5 3.6E-13 7.8E-18 108.8 15.9 153 20-186 27-232 (240)
224 cd01883 EF1_alpha Eukaryotic e 99.5 8.2E-14 1.8E-18 112.4 12.1 136 21-177 1-174 (219)
225 PRK05506 bifunctional sulfate 99.5 8.1E-14 1.7E-18 128.8 13.4 142 15-177 20-192 (632)
226 KOG1707 Predicted Ras related/ 99.5 6.1E-14 1.3E-18 122.2 11.5 197 17-239 7-205 (625)
227 PRK04004 translation initiatio 99.5 3.2E-13 7E-18 122.8 16.8 115 18-150 5-136 (586)
228 KOG1489 Predicted GTP-binding 99.5 1.5E-13 3.3E-18 111.7 13.0 159 20-206 197-364 (366)
229 cd04105 SR_beta Signal recogni 99.5 1.8E-13 3.8E-18 109.0 13.3 115 21-152 2-124 (203)
230 KOG1191 Mitochondrial GTPase [ 99.5 1.4E-13 3.1E-18 117.9 13.4 178 16-210 265-451 (531)
231 KOG0093 GTPase Rab3, small G p 99.5 2E-13 4.2E-18 98.4 11.5 161 19-209 21-183 (193)
232 COG0480 FusA Translation elong 99.5 3.4E-13 7.4E-18 123.5 15.9 217 16-266 7-246 (697)
233 COG0536 Obg Predicted GTPase [ 99.5 4.7E-13 1E-17 110.2 15.0 168 22-211 162-335 (369)
234 PRK13351 elongation factor G; 99.5 1.5E-13 3.4E-18 128.3 14.0 127 17-163 6-148 (687)
235 KOG1490 GTP-binding protein CR 99.5 7.9E-14 1.7E-18 119.5 10.7 137 13-159 162-301 (620)
236 KOG2655 Septin family protein 99.5 5.8E-13 1.3E-17 111.6 15.7 154 20-186 22-200 (366)
237 PF05049 IIGP: Interferon-indu 99.5 1.3E-13 2.8E-18 117.2 11.8 175 18-212 34-221 (376)
238 KOG0073 GTP-binding ADP-ribosy 99.5 1.1E-12 2.3E-17 96.5 14.9 157 18-204 15-173 (185)
239 PTZ00327 eukaryotic translatio 99.5 2.9E-13 6.4E-18 119.3 14.4 168 18-210 33-234 (460)
240 cd04167 Snu114p Snu114p subfam 99.5 6.2E-13 1.3E-17 106.8 15.0 115 20-150 1-136 (213)
241 COG1163 DRG Predicted GTPase [ 99.5 2.1E-13 4.6E-18 111.3 12.2 163 18-209 62-289 (365)
242 COG1100 GTPase SAR1 and relate 99.5 1.1E-12 2.4E-17 105.8 15.8 116 20-152 6-126 (219)
243 cd01885 EF2 EF2 (for archaea a 99.5 1.7E-13 3.8E-18 109.9 10.7 115 20-150 1-138 (222)
244 COG2229 Predicted GTPase [Gene 99.5 4.9E-12 1.1E-16 95.3 16.1 120 18-152 9-136 (187)
245 PLN03126 Elongation factor Tu; 99.5 1.4E-12 3E-17 115.8 15.4 138 17-177 79-231 (478)
246 PTZ00141 elongation factor 1- 99.5 9.4E-13 2E-17 116.4 14.0 139 18-177 6-182 (446)
247 KOG1145 Mitochondrial translat 99.5 1.7E-12 3.7E-17 112.5 14.8 160 18-207 152-314 (683)
248 COG0532 InfB Translation initi 99.5 1.8E-12 3.9E-17 112.8 14.7 162 19-207 5-168 (509)
249 KOG1547 Septin CDC10 and relat 99.5 2.6E-12 5.6E-17 100.6 14.1 154 20-186 47-226 (336)
250 PRK00741 prfC peptide chain re 99.5 1.7E-12 3.7E-17 116.7 14.9 119 17-152 8-146 (526)
251 KOG0462 Elongation factor-type 99.5 1.2E-12 2.6E-17 113.4 13.1 167 15-212 56-238 (650)
252 TIGR00503 prfC peptide chain r 99.4 2.9E-12 6.3E-17 115.2 15.2 119 17-152 9-147 (527)
253 COG4917 EutP Ethanolamine util 99.4 4.6E-13 1E-17 94.0 7.5 143 20-207 2-144 (148)
254 KOG0091 GTPase Rab39, small G 99.4 6.4E-12 1.4E-16 92.3 11.8 162 19-209 8-173 (213)
255 PLN00043 elongation factor 1-a 99.4 1.1E-11 2.3E-16 109.8 15.2 139 18-177 6-182 (447)
256 KOG0088 GTPase Rab21, small G 99.4 2.1E-12 4.5E-17 94.3 8.7 162 19-209 13-175 (218)
257 cd01882 BMS1 Bms1. Bms1 is an 99.4 4.5E-11 9.7E-16 96.7 17.3 111 17-152 37-148 (225)
258 KOG0086 GTPase Rab4, small G p 99.4 1.9E-11 4.1E-16 88.9 13.2 117 20-152 10-129 (214)
259 PRK09602 translation-associate 99.4 4.9E-11 1.1E-15 103.7 17.7 89 20-114 2-113 (396)
260 TIGR02836 spore_IV_A stage IV 99.4 4.6E-11 9.9E-16 101.7 16.8 129 17-150 15-193 (492)
261 PRK09601 GTP-binding protein Y 99.4 6.8E-11 1.5E-15 100.6 17.8 89 20-114 3-107 (364)
262 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 8.8E-12 1.9E-16 100.1 11.6 156 21-189 1-161 (232)
263 cd01899 Ygr210 Ygr210 subfamil 99.4 7.1E-11 1.5E-15 99.7 17.1 87 22-114 1-110 (318)
264 COG5256 TEF1 Translation elong 99.3 2.9E-11 6.3E-16 102.2 14.3 137 18-179 6-182 (428)
265 PF09439 SRPRB: Signal recogni 99.3 5.2E-12 1.1E-16 97.2 7.4 119 19-152 3-127 (181)
266 KOG0448 Mitofusin 1 GTPase, in 99.3 3.1E-10 6.8E-15 101.1 19.3 131 18-162 108-286 (749)
267 KOG0395 Ras-related GTPase [Ge 99.3 7.8E-11 1.7E-15 92.8 13.9 161 19-210 3-166 (196)
268 KOG0075 GTP-binding ADP-ribosy 99.3 1.1E-11 2.5E-16 89.4 7.8 159 19-208 20-181 (186)
269 KOG0070 GTP-binding ADP-ribosy 99.3 2E-11 4.3E-16 92.1 9.3 164 16-210 14-179 (181)
270 PTZ00416 elongation factor 2; 99.3 2.4E-11 5.2E-16 115.3 11.8 118 16-150 16-157 (836)
271 KOG0393 Ras-related small GTPa 99.3 1.8E-11 4E-16 94.6 8.9 165 19-208 4-178 (198)
272 TIGR00490 aEF-2 translation el 99.3 1.6E-11 3.5E-16 115.0 9.7 118 18-151 18-152 (720)
273 PRK12740 elongation factor G; 99.3 5.4E-11 1.2E-15 111.1 12.3 111 25-152 1-127 (668)
274 PLN00116 translation elongatio 99.3 7.7E-11 1.7E-15 112.0 13.4 119 16-150 16-163 (843)
275 KOG1532 GTPase XAB1, interacts 99.2 7.1E-11 1.5E-15 94.5 10.3 132 69-210 116-265 (366)
276 KOG0097 GTPase Rab14, small G 99.2 4.2E-10 9.2E-15 80.7 12.9 155 20-204 12-168 (215)
277 cd01900 YchF YchF subfamily. 99.2 7.4E-11 1.6E-15 97.3 10.2 86 22-114 1-103 (274)
278 PTZ00258 GTP-binding protein; 99.2 1E-10 2.2E-15 100.7 11.4 92 17-114 19-126 (390)
279 KOG0074 GTP-binding ADP-ribosy 99.2 4.7E-11 1E-15 85.7 7.4 129 12-160 10-140 (185)
280 PRK09435 membrane ATPase/prote 99.2 1.3E-09 2.9E-14 92.2 17.5 112 68-210 148-261 (332)
281 PRK07560 elongation factor EF- 99.2 9.3E-11 2E-15 110.2 10.8 119 17-151 18-153 (731)
282 KOG1954 Endocytosis/signaling 99.2 7E-09 1.5E-13 86.5 20.1 131 17-152 56-226 (532)
283 KOG4252 GTP-binding protein [S 99.2 3E-11 6.6E-16 90.2 5.6 160 17-207 18-179 (246)
284 KOG0081 GTPase Rab27, small G 99.2 2.4E-11 5.1E-16 88.9 4.9 141 20-182 10-160 (219)
285 COG3276 SelB Selenocysteine-sp 99.2 5.1E-10 1.1E-14 95.4 13.5 159 21-208 2-161 (447)
286 COG1217 TypA Predicted membran 99.2 9.3E-10 2E-14 94.1 14.8 170 19-213 5-199 (603)
287 COG0481 LepA Membrane GTPase L 99.2 2.9E-10 6.2E-15 97.5 11.4 169 16-214 6-191 (603)
288 COG5257 GCD11 Translation init 99.2 2.6E-10 5.6E-15 93.2 10.5 168 18-211 9-204 (415)
289 PRK13768 GTPase; Provisional 99.2 2.8E-10 6.2E-15 93.5 10.7 132 70-210 98-248 (253)
290 KOG0071 GTP-binding ADP-ribosy 99.2 1.5E-09 3.3E-14 77.9 12.4 159 18-208 16-177 (180)
291 KOG0083 GTPase Rab26/Rab37, sm 99.1 4.7E-11 1E-15 84.8 4.3 157 24-210 2-161 (192)
292 cd01851 GBP Guanylate-binding 99.1 4.4E-09 9.5E-14 84.9 14.8 94 18-114 6-102 (224)
293 KOG0076 GTP-binding ADP-ribosy 99.1 2.8E-10 6E-15 84.8 6.9 165 20-211 18-189 (197)
294 KOG0447 Dynamin-like GTP bindi 99.1 5.2E-09 1.1E-13 91.2 15.3 141 5-152 297-494 (980)
295 COG2895 CysN GTPases - Sulfate 99.1 2E-09 4.4E-14 89.2 12.1 141 17-178 4-175 (431)
296 KOG0410 Predicted GTP binding 99.1 3.9E-10 8.5E-15 92.3 7.8 161 19-210 178-342 (410)
297 cd01858 NGP_1 NGP-1. Autoanti 99.1 5E-10 1.1E-14 85.6 7.3 57 18-79 101-157 (157)
298 COG0012 Predicted GTPase, prob 99.1 1E-08 2.2E-13 86.3 15.6 90 19-114 2-108 (372)
299 KOG0465 Mitochondrial elongati 99.1 1E-09 2.2E-14 96.6 9.8 213 14-261 34-271 (721)
300 PF03193 DUF258: Protein of un 99.1 1.8E-10 3.8E-15 86.9 4.4 63 19-85 35-103 (161)
301 COG5192 BMS1 GTP-binding prote 99.1 6.9E-09 1.5E-13 90.9 14.7 162 16-207 66-229 (1077)
302 KOG0458 Elongation factor 1 al 99.0 3.5E-09 7.5E-14 93.0 12.6 142 15-177 173-351 (603)
303 KOG2486 Predicted GTPase [Gene 99.0 3.2E-09 7E-14 85.3 10.7 127 16-152 133-263 (320)
304 cd04178 Nucleostemin_like Nucl 99.0 1E-09 2.2E-14 84.8 7.1 57 18-79 116-172 (172)
305 COG0050 TufB GTPases - transla 99.0 7.2E-09 1.6E-13 83.9 12.1 173 16-210 9-202 (394)
306 COG4108 PrfC Peptide chain rel 99.0 7.9E-09 1.7E-13 88.0 12.8 118 18-152 11-148 (528)
307 PTZ00099 rab6; Provisional 99.0 1.4E-08 2.9E-13 79.0 13.1 114 69-210 29-143 (176)
308 TIGR00750 lao LAO/AO transport 99.0 6E-08 1.3E-12 81.9 17.2 24 18-41 33-56 (300)
309 KOG3859 Septins (P-loop GTPase 99.0 1.4E-07 2.9E-12 76.0 17.9 136 19-163 42-200 (406)
310 KOG0461 Selenocysteine-specifi 99.0 3.5E-08 7.5E-13 81.7 14.7 165 19-210 7-194 (522)
311 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 2.5E-09 5.4E-14 80.1 7.3 59 17-80 81-139 (141)
312 PRK14845 translation initiatio 99.0 1.3E-08 2.8E-13 97.4 13.8 103 31-151 473-592 (1049)
313 TIGR01425 SRP54_euk signal rec 98.9 3.6E-07 7.9E-12 79.8 21.1 123 18-152 99-254 (429)
314 KOG0464 Elongation factor G [T 98.9 6.4E-09 1.4E-13 87.9 9.8 156 18-201 36-207 (753)
315 cd01855 YqeH YqeH. YqeH is an 98.9 1.8E-09 3.9E-14 85.2 5.8 57 19-79 127-190 (190)
316 cd01849 YlqF_related_GTPase Yl 98.9 3.6E-09 7.8E-14 80.6 7.1 57 18-79 99-155 (155)
317 KOG1486 GTP-binding protein DR 98.9 2E-08 4.3E-13 79.6 11.0 88 20-114 63-150 (364)
318 PRK09563 rbgA GTPase YlqF; Rev 98.9 9.2E-09 2E-13 86.3 9.7 66 18-88 120-185 (287)
319 KOG0072 GTP-binding ADP-ribosy 98.9 3.2E-09 7E-14 76.6 5.6 163 17-210 16-180 (182)
320 KOG0090 Signal recognition par 98.9 2.4E-08 5.2E-13 77.3 10.6 118 20-152 39-160 (238)
321 COG0488 Uup ATPase components 98.9 1.3E-09 2.8E-14 97.8 3.9 44 17-60 27-70 (530)
322 KOG3883 Ras family small GTPas 98.9 4.7E-08 1E-12 71.4 11.0 119 18-152 8-133 (198)
323 PF00448 SRP54: SRP54-type pro 98.9 9.8E-09 2.1E-13 81.0 8.1 73 68-152 83-155 (196)
324 cd01856 YlqF YlqF. Proteins o 98.9 8.3E-09 1.8E-13 79.9 7.4 59 17-80 113-171 (171)
325 PRK12288 GTPase RsgA; Reviewed 98.9 9.9E-09 2.1E-13 87.8 8.3 62 20-85 206-273 (347)
326 TIGR03596 GTPase_YlqF ribosome 98.8 1.9E-08 4.2E-13 83.9 9.5 62 18-84 117-178 (276)
327 COG1162 Predicted GTPases [Gen 98.8 1.6E-08 3.4E-13 83.3 8.1 63 18-84 163-231 (301)
328 KOG3886 GTP-binding protein [S 98.8 1.5E-08 3.3E-13 79.2 7.3 125 18-152 3-131 (295)
329 KOG0468 U5 snRNP-specific prot 98.8 4.1E-08 8.8E-13 87.5 10.8 117 18-150 127-262 (971)
330 TIGR00157 ribosome small subun 98.8 1.1E-08 2.3E-13 83.8 6.6 60 20-84 121-186 (245)
331 PRK12289 GTPase RsgA; Reviewed 98.8 9.6E-09 2.1E-13 87.9 6.6 60 20-83 173-238 (352)
332 KOG1144 Translation initiation 98.8 4.4E-08 9.5E-13 88.3 10.9 174 18-209 474-687 (1064)
333 KOG1491 Predicted GTP-binding 98.8 2.4E-07 5.3E-12 76.7 13.8 91 18-114 19-125 (391)
334 KOG0077 Vesicle coat complex C 98.8 9.1E-08 2E-12 71.0 9.7 116 18-152 19-136 (193)
335 COG1419 FlhF Flagellar GTP-bin 98.8 3.8E-08 8.3E-13 84.0 8.7 123 18-152 202-353 (407)
336 KOG1673 Ras GTPases [General f 98.7 1.8E-07 3.9E-12 68.6 10.6 180 5-208 6-185 (205)
337 PF03029 ATP_bind_1: Conserved 98.7 1.5E-08 3.3E-13 82.3 5.7 77 70-152 92-171 (238)
338 PRK00098 GTPase RsgA; Reviewed 98.7 4.4E-08 9.6E-13 82.6 8.7 60 19-82 164-229 (298)
339 TIGR03597 GTPase_YqeH ribosome 98.7 3.2E-08 7E-13 85.5 8.0 124 19-152 154-281 (360)
340 PRK14723 flhF flagellar biosyn 98.7 1.3E-07 2.7E-12 87.8 12.2 124 19-152 185-338 (767)
341 cd01854 YjeQ_engC YjeQ/EngC. 98.7 5.4E-08 1.2E-12 81.6 9.0 59 20-82 162-226 (287)
342 PRK11889 flhF flagellar biosyn 98.7 6E-08 1.3E-12 83.0 9.0 123 18-152 240-392 (436)
343 PRK14721 flhF flagellar biosyn 98.7 6.4E-08 1.4E-12 84.4 8.8 124 17-152 189-341 (420)
344 COG1161 Predicted GTPases [Gen 98.7 5.1E-08 1.1E-12 82.9 7.8 62 18-84 131-192 (322)
345 TIGR00092 GTP-binding protein 98.7 1.1E-07 2.4E-12 81.2 9.6 90 20-114 3-108 (368)
346 PRK14722 flhF flagellar biosyn 98.7 1.2E-07 2.6E-12 81.5 9.8 129 18-152 136-296 (374)
347 TIGR03348 VI_IcmF type VI secr 98.7 1.3E-07 2.8E-12 93.3 11.4 124 21-152 113-258 (1169)
348 KOG0467 Translation elongation 98.7 5E-08 1.1E-12 88.2 7.6 118 14-150 4-137 (887)
349 PRK10416 signal recognition pa 98.7 1E-06 2.2E-11 74.7 15.2 126 17-152 112-274 (318)
350 KOG0096 GTPase Ran/TC4/GSP1 (n 98.7 9.5E-08 2.1E-12 72.5 7.6 157 19-210 10-170 (216)
351 COG0488 Uup ATPase components 98.6 7E-08 1.5E-12 86.8 7.2 134 17-163 346-484 (530)
352 PRK12727 flagellar biosynthesi 98.6 5.6E-07 1.2E-11 80.0 12.7 25 17-41 348-372 (559)
353 TIGR00064 ftsY signal recognit 98.6 1.2E-06 2.6E-11 72.7 13.9 76 67-152 153-232 (272)
354 PRK12726 flagellar biosynthesi 98.6 2.2E-07 4.7E-12 79.4 9.5 124 17-152 204-357 (407)
355 PRK14974 cell division protein 98.6 4.9E-07 1.1E-11 76.9 11.5 73 68-152 222-294 (336)
356 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3.1E-12 71.8 7.6 57 18-79 100-156 (156)
357 PF03308 ArgK: ArgK protein; 98.6 3.2E-07 7E-12 73.9 9.7 106 68-210 121-231 (266)
358 KOG0460 Mitochondrial translat 98.5 1.7E-06 3.6E-11 71.8 12.1 173 16-210 51-246 (449)
359 PRK00771 signal recognition pa 98.5 6.2E-06 1.3E-10 72.7 16.3 72 69-152 176-247 (437)
360 PRK12724 flagellar biosynthesi 98.5 3.9E-07 8.5E-12 79.0 8.5 124 19-152 223-374 (432)
361 KOG1424 Predicted GTP-binding 98.5 1.4E-07 3.1E-12 82.0 5.7 60 19-84 314-374 (562)
362 COG1703 ArgK Putative periplas 98.5 3E-06 6.5E-11 69.4 13.0 109 68-210 143-255 (323)
363 PRK06995 flhF flagellar biosyn 98.5 1.3E-06 2.8E-11 77.5 11.6 26 18-43 255-280 (484)
364 PRK13796 GTPase YqeH; Provisio 98.5 2.6E-07 5.7E-12 80.0 6.6 59 19-81 160-222 (365)
365 PRK12723 flagellar biosynthesi 98.5 7.6E-07 1.6E-11 77.2 9.2 124 18-152 173-327 (388)
366 PRK05703 flhF flagellar biosyn 98.5 4.4E-07 9.5E-12 80.0 7.7 122 19-152 221-372 (424)
367 cd03112 CobW_like The function 98.5 1.8E-06 4E-11 65.8 9.8 22 21-42 2-23 (158)
368 COG1120 FepC ABC-type cobalami 98.4 1.5E-06 3.2E-11 70.7 9.1 41 6-48 17-57 (258)
369 TIGR00073 hypB hydrogenase acc 98.4 9E-07 1.9E-11 70.7 7.7 25 18-42 21-45 (207)
370 cd03229 ABC_Class3 This class 98.4 7.3E-06 1.6E-10 63.9 12.6 31 18-48 25-55 (178)
371 cd03222 ABC_RNaseL_inhibitor T 98.4 9E-06 1.9E-10 63.1 12.9 32 17-48 23-54 (177)
372 KOG3905 Dynein light intermedi 98.4 1.1E-05 2.5E-10 66.6 13.2 33 15-47 48-80 (473)
373 PRK06731 flhF flagellar biosyn 98.4 1.6E-06 3.5E-11 71.6 8.1 123 18-152 74-226 (270)
374 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 1.5E-06 3.2E-11 70.4 7.6 31 18-48 29-59 (254)
375 TIGR00101 ureG urease accessor 98.3 8.6E-06 1.9E-10 64.5 11.5 23 20-42 2-24 (199)
376 PRK10867 signal recognition pa 98.3 4.6E-05 9.9E-10 67.2 16.9 73 68-152 183-255 (433)
377 cd03230 ABC_DR_subfamily_A Thi 98.3 7.8E-06 1.7E-10 63.4 10.9 124 17-146 24-153 (173)
378 cd03216 ABC_Carb_Monos_I This 98.3 5.2E-06 1.1E-10 63.7 9.7 32 17-48 24-55 (163)
379 COG3523 IcmF Type VI protein s 98.3 1.9E-06 4.2E-11 83.2 8.4 135 22-163 128-278 (1188)
380 PRK10463 hydrogenase nickel in 98.3 4.4E-07 9.6E-12 75.1 3.2 26 17-42 102-127 (290)
381 cd03215 ABC_Carb_Monos_II This 98.3 6.7E-06 1.5E-10 64.3 9.4 31 18-48 25-55 (182)
382 KOG1143 Predicted translation 98.3 1.4E-06 3E-11 73.2 5.0 139 20-180 168-339 (591)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 2.4E-05 5.1E-10 58.7 11.2 32 17-48 24-55 (144)
384 cd00066 G-alpha G protein alph 98.2 1.5E-05 3.3E-10 67.8 11.3 74 66-151 158-242 (317)
385 COG1126 GlnQ ABC-type polar am 98.2 4.2E-05 9E-10 60.0 12.4 32 17-48 26-57 (240)
386 cd03223 ABCD_peroxisomal_ALDP 98.2 6.5E-05 1.4E-09 57.8 13.7 32 17-48 25-56 (166)
387 COG0541 Ffh Signal recognition 98.2 0.00013 2.8E-09 63.1 16.4 77 69-157 183-259 (451)
388 cd03293 ABC_NrtD_SsuB_transpor 98.2 6.7E-06 1.5E-10 66.4 8.2 31 18-48 29-59 (220)
389 COG5258 GTPBP1 GTPase [General 98.2 4.4E-06 9.5E-11 70.5 7.1 138 17-176 115-287 (527)
390 cd03246 ABCC_Protease_Secretio 98.2 1.2E-05 2.6E-10 62.4 9.1 31 18-48 27-57 (173)
391 cd03228 ABCC_MRP_Like The MRP 98.2 1E-05 2.2E-10 62.6 8.6 32 17-48 26-57 (171)
392 KOG2485 Conserved ATP/GTP bind 98.2 4.4E-06 9.6E-11 68.7 6.7 70 18-88 142-215 (335)
393 cd03213 ABCG_EPDR ABCG transpo 98.2 3.5E-05 7.5E-10 60.9 11.5 32 17-48 33-66 (194)
394 smart00275 G_alpha G protein a 98.2 2.2E-05 4.8E-10 67.4 11.0 74 66-151 181-265 (342)
395 KOG0927 Predicted transporter 98.2 6E-07 1.3E-11 78.8 1.3 128 18-162 415-553 (614)
396 TIGR00959 ffh signal recogniti 98.2 0.00017 3.6E-09 63.6 16.4 73 68-152 182-254 (428)
397 COG4988 CydD ABC-type transpor 98.1 1.9E-05 4.1E-10 70.4 9.9 32 17-48 345-376 (559)
398 PRK11247 ssuB aliphatic sulfon 98.1 8.9E-06 1.9E-10 67.2 7.3 32 17-48 36-67 (257)
399 PRK01889 GTPase RsgA; Reviewed 98.1 2.6E-06 5.6E-11 73.6 4.2 30 19-48 195-224 (356)
400 KOG0466 Translation initiation 98.1 2.5E-06 5.5E-11 69.8 3.9 165 18-211 37-243 (466)
401 KOG0066 eIF2-interacting prote 98.1 3.3E-05 7.2E-10 66.6 10.6 39 20-58 614-652 (807)
402 cd03247 ABCC_cytochrome_bd The 98.1 1.9E-05 4E-10 61.6 8.6 32 17-48 26-57 (178)
403 TIGR00960 3a0501s02 Type II (G 98.1 1.9E-05 4.1E-10 63.5 8.9 32 17-48 27-58 (216)
404 TIGR02868 CydC thiol reductant 98.1 5.5E-06 1.2E-10 75.8 6.3 32 17-48 359-390 (529)
405 cd03217 ABC_FeS_Assembly ABC-t 98.1 2.5E-05 5.5E-10 62.0 8.9 26 17-42 24-49 (200)
406 KOG2484 GTPase [General functi 98.1 5.1E-06 1.1E-10 70.4 4.8 64 16-84 249-312 (435)
407 cd03115 SRP The signal recogni 98.1 0.0002 4.3E-09 55.4 13.5 73 68-152 82-154 (173)
408 PRK13543 cytochrome c biogenes 98.1 1.3E-05 2.8E-10 64.4 6.9 32 17-48 35-66 (214)
409 PRK11248 tauB taurine transpor 98.1 1.9E-05 4.2E-10 65.2 8.0 32 17-48 25-56 (255)
410 cd03298 ABC_ThiQ_thiamine_tran 98.0 2.8E-05 6E-10 62.3 8.6 32 17-48 22-53 (211)
411 TIGR01069 mutS2 MutS2 family p 98.0 0.00031 6.8E-09 66.6 16.7 23 20-42 323-345 (771)
412 COG3840 ThiQ ABC-type thiamine 98.0 4.9E-06 1.1E-10 63.4 3.8 31 18-48 24-54 (231)
413 COG1116 TauB ABC-type nitrate/ 98.0 5.7E-06 1.2E-10 66.3 4.2 31 18-48 28-58 (248)
414 cd03219 ABC_Mj1267_LivG_branch 98.0 1E-05 2.3E-10 65.9 5.8 32 17-48 24-55 (236)
415 cd03114 ArgK-like The function 98.0 6.8E-05 1.5E-09 56.5 9.6 20 22-41 2-21 (148)
416 COG4559 ABC-type hemin transpo 98.0 6.9E-06 1.5E-10 64.1 4.2 45 2-48 12-56 (259)
417 cd03214 ABC_Iron-Siderophores_ 98.0 9.2E-05 2E-09 57.7 10.7 32 17-48 23-54 (180)
418 cd03232 ABC_PDR_domain2 The pl 98.0 0.00011 2.3E-09 58.0 11.2 26 18-43 32-57 (192)
419 PF05783 DLIC: Dynein light in 98.0 8.5E-05 1.9E-09 66.1 11.6 28 17-44 23-50 (472)
420 COG1131 CcmA ABC-type multidru 98.0 7.9E-06 1.7E-10 68.8 4.8 108 18-134 30-154 (293)
421 COG2274 SunT ABC-type bacterio 98.0 6E-05 1.3E-09 70.5 10.7 32 17-48 497-528 (709)
422 COG1136 SalX ABC-type antimicr 98.0 7.6E-06 1.7E-10 65.3 4.2 32 17-48 29-60 (226)
423 TIGR01277 thiQ thiamine ABC tr 98.0 4.7E-05 1E-09 61.1 8.8 32 17-48 22-53 (213)
424 COG1122 CbiO ABC-type cobalt t 98.0 0.00013 2.8E-09 59.1 11.1 31 18-48 29-59 (235)
425 cd03256 ABC_PhnC_transporter A 98.0 1.1E-05 2.4E-10 66.0 5.0 32 17-48 25-56 (241)
426 cd03280 ABC_MutS2 MutS2 homolo 98.0 0.00024 5.3E-09 56.4 12.5 21 20-40 29-49 (200)
427 PRK11174 cysteine/glutathione 98.0 2.1E-05 4.5E-10 73.0 7.1 31 17-48 374-404 (588)
428 PRK11432 fbpC ferric transport 97.9 6.2E-05 1.3E-09 65.0 9.4 31 18-48 31-61 (351)
429 KOG4423 GTP-binding protein-li 97.9 3.8E-07 8.2E-12 69.0 -3.7 162 19-211 25-196 (229)
430 COG0411 LivG ABC-type branched 97.9 2.2E-06 4.7E-11 68.3 0.3 32 17-48 28-59 (250)
431 cd01858 NGP_1 NGP-1. Autoanti 97.9 6.4E-05 1.4E-09 57.3 8.4 90 100-208 5-94 (157)
432 PRK10584 putative ABC transpor 97.9 0.00025 5.4E-09 57.5 12.3 32 17-48 34-65 (228)
433 COG3845 ABC-type uncharacteriz 97.9 9.4E-05 2E-09 64.7 10.1 31 18-48 29-59 (501)
434 COG1618 Predicted nucleotide k 97.9 0.0016 3.5E-08 48.8 15.1 116 19-148 5-141 (179)
435 PRK11147 ABC transporter ATPas 97.9 9.1E-06 2E-10 75.9 4.2 32 17-48 343-374 (635)
436 PF09547 Spore_IV_A: Stage IV 97.9 0.00056 1.2E-08 59.1 14.5 154 17-186 15-218 (492)
437 COG1117 PstB ABC-type phosphat 97.9 0.00033 7.1E-09 55.0 11.9 27 18-44 32-58 (253)
438 PRK13546 teichoic acids export 97.9 0.00011 2.5E-09 60.9 10.2 32 17-48 48-79 (264)
439 PRK11000 maltose/maltodextrin 97.9 7.8E-05 1.7E-09 64.9 9.6 31 18-48 28-58 (369)
440 PRK11300 livG leucine/isoleuci 97.9 1.9E-05 4.2E-10 65.2 5.5 32 17-48 29-60 (255)
441 smart00010 small_GTPase Small 97.9 7.3E-05 1.6E-09 54.1 7.9 22 21-42 2-23 (124)
442 PRK10636 putative ABC transpor 97.9 1.3E-05 2.7E-10 74.9 4.5 32 17-48 336-367 (638)
443 KOG1487 GTP-binding protein DR 97.9 1.1E-05 2.5E-10 64.6 3.6 105 20-133 60-164 (358)
444 PRK13545 tagH teichoic acids e 97.9 8.1E-05 1.8E-09 66.8 9.0 32 17-48 48-79 (549)
445 COG1132 MdlB ABC-type multidru 97.9 3.8E-05 8.2E-10 70.9 7.2 32 17-48 353-384 (567)
446 COG0378 HypB Ni2+-binding GTPa 97.9 4.9E-05 1.1E-09 58.6 6.6 23 19-41 13-35 (202)
447 PF00005 ABC_tran: ABC transpo 97.9 1.2E-05 2.5E-10 59.7 3.0 31 18-48 10-40 (137)
448 cd03243 ABC_MutS_homologs The 97.9 0.00029 6.3E-09 56.0 11.2 24 18-41 28-51 (202)
449 PRK13657 cyclic beta-1,2-gluca 97.8 5.1E-05 1.1E-09 70.4 7.8 31 18-48 360-390 (588)
450 COG3640 CooC CO dehydrogenase 97.8 4.9E-05 1.1E-09 60.3 6.4 47 100-150 152-198 (255)
451 PRK09536 btuD corrinoid ABC tr 97.8 2.8E-05 6.2E-10 68.1 5.7 32 17-48 27-58 (402)
452 KOG2423 Nucleolar GTPase [Gene 97.8 1.3E-05 2.7E-10 68.0 3.2 64 16-84 304-367 (572)
453 TIGR02142 modC_ABC molybdenum 97.8 5.4E-05 1.2E-09 65.6 7.3 31 18-48 22-52 (354)
454 PRK11650 ugpC glycerol-3-phosp 97.8 9.2E-05 2E-09 64.1 8.7 31 18-48 29-59 (356)
455 COG1124 DppF ABC-type dipeptid 97.8 2.7E-05 5.9E-10 62.1 4.8 32 17-48 31-62 (252)
456 KOG0446 Vacuolar sorting prote 97.8 1.7E-05 3.7E-10 73.3 4.1 130 18-152 28-214 (657)
457 TIGR01186 proV glycine betaine 97.8 0.00016 3.4E-09 62.7 9.8 32 17-48 17-48 (363)
458 TIGR03797 NHPM_micro_ABC2 NHPM 97.8 3.9E-05 8.3E-10 72.5 6.6 32 17-48 477-508 (686)
459 KOG3887 Predicted small GTPase 97.8 5.9E-05 1.3E-09 59.9 6.4 125 18-152 26-150 (347)
460 PRK11160 cysteine/glutathione 97.8 4E-05 8.6E-10 70.8 6.5 32 17-48 364-395 (574)
461 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.00019 4.2E-09 54.6 9.3 31 18-48 24-54 (157)
462 PRK10070 glycine betaine trans 97.8 0.00012 2.5E-09 64.3 9.0 32 17-48 52-83 (400)
463 cd03225 ABC_cobalt_CbiO_domain 97.8 2.3E-05 5E-10 62.7 4.3 32 17-48 25-56 (211)
464 TIGR02203 MsbA_lipidA lipid A 97.8 4.5E-05 9.8E-10 70.5 6.7 32 17-48 356-387 (571)
465 PRK15439 autoinducer 2 ABC tra 97.8 3.7E-05 8E-10 70.0 6.0 31 18-48 36-66 (510)
466 cd03261 ABC_Org_Solvent_Resist 97.8 2.3E-05 5E-10 63.9 4.2 32 17-48 24-55 (235)
467 COG0552 FtsY Signal recognitio 97.8 8.1E-05 1.8E-09 62.2 7.3 126 17-152 137-299 (340)
468 PRK15177 Vi polysaccharide exp 97.8 2.5E-05 5.4E-10 62.7 4.2 31 18-48 12-42 (213)
469 cd03233 ABC_PDR_domain1 The pl 97.8 0.00052 1.1E-08 54.6 11.7 28 17-44 31-58 (202)
470 COG1134 TagH ABC-type polysacc 97.8 2.4E-05 5.2E-10 62.5 3.9 32 17-48 51-82 (249)
471 KOG0463 GTP-binding protein GP 97.8 7.8E-05 1.7E-09 63.0 7.1 87 69-178 219-307 (641)
472 PRK11144 modC molybdate transp 97.8 0.00012 2.5E-09 63.5 8.5 31 18-48 23-53 (352)
473 TIGR03796 NHPM_micro_ABC1 NHPM 97.8 4.7E-05 1E-09 72.2 6.6 32 17-48 503-534 (710)
474 COG1119 ModF ABC-type molybden 97.8 0.00046 9.9E-09 55.3 11.1 31 18-48 56-86 (257)
475 cd03226 ABC_cobalt_CbiO_domain 97.8 2.6E-05 5.5E-10 62.2 4.1 32 17-48 24-55 (205)
476 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.8 2.6E-05 5.6E-10 62.8 4.1 32 17-48 28-59 (218)
477 TIGR01166 cbiO cobalt transpor 97.8 2.8E-05 6E-10 61.3 4.2 31 18-48 17-47 (190)
478 cd03265 ABC_DrrA DrrA is the A 97.8 2.7E-05 5.9E-10 62.8 4.2 32 17-48 24-55 (220)
479 TIGR02857 CydD thiol reductant 97.8 7.1E-05 1.5E-09 68.5 7.4 32 17-48 346-377 (529)
480 COG3839 MalK ABC-type sugar tr 97.8 2.6E-05 5.6E-10 66.1 4.2 31 18-48 28-58 (338)
481 TIGR02673 FtsE cell division A 97.8 2.9E-05 6.2E-10 62.4 4.2 32 17-48 26-57 (214)
482 KOG0459 Polypeptide release fa 97.8 2.6E-05 5.6E-10 66.3 4.0 143 15-177 75-254 (501)
483 cd03259 ABC_Carb_Solutes_like 97.8 2.8E-05 6.2E-10 62.4 4.2 32 17-48 24-55 (213)
484 PRK10790 putative multidrug tr 97.8 5E-05 1.1E-09 70.5 6.3 32 17-48 365-396 (592)
485 PRK10789 putative multidrug tr 97.8 6.2E-05 1.3E-09 69.5 6.8 32 17-48 339-370 (569)
486 PRK11176 lipid transporter ATP 97.7 6.4E-05 1.4E-09 69.6 6.7 31 18-48 368-398 (582)
487 cd03262 ABC_HisP_GlnQ_permease 97.7 3.4E-05 7.4E-10 61.9 4.3 32 17-48 24-55 (213)
488 cd03269 ABC_putative_ATPase Th 97.7 3.4E-05 7.3E-10 61.8 4.2 32 17-48 24-55 (210)
489 cd03235 ABC_Metallic_Cations A 97.7 3.4E-05 7.4E-10 61.9 4.2 32 17-48 23-54 (213)
490 TIGR02211 LolD_lipo_ex lipopro 97.7 3.5E-05 7.5E-10 62.2 4.3 32 17-48 29-60 (221)
491 TIGR03608 L_ocin_972_ABC putat 97.7 3.4E-05 7.3E-10 61.6 4.1 31 18-48 23-53 (206)
492 TIGR01189 ccmA heme ABC export 97.7 3.7E-05 8.1E-10 60.9 4.3 32 17-48 24-55 (198)
493 cd03250 ABCC_MRP_domain1 Domai 97.7 9.3E-05 2E-09 58.9 6.6 32 17-48 29-60 (204)
494 PRK13541 cytochrome c biogenes 97.7 3.7E-05 8E-10 60.8 4.2 31 18-48 25-55 (195)
495 PRK10522 multidrug transporter 97.7 7.6E-05 1.7E-09 68.6 6.8 32 17-48 347-378 (547)
496 cd03264 ABC_drug_resistance_li 97.7 3.3E-05 7.1E-10 61.9 3.9 28 21-48 27-54 (211)
497 PRK13540 cytochrome c biogenes 97.7 3.8E-05 8.2E-10 61.0 4.2 32 17-48 25-56 (200)
498 KOG0057 Mitochondrial Fe/S clu 97.7 0.00017 3.6E-09 64.0 8.4 138 6-149 367-520 (591)
499 cd03292 ABC_FtsE_transporter F 97.7 3.6E-05 7.7E-10 61.8 4.1 31 18-48 26-56 (214)
500 cd03224 ABC_TM1139_LivF_branch 97.7 3.8E-05 8.2E-10 62.0 4.3 32 17-48 24-55 (222)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=8.8e-36 Score=238.63 Aligned_cols=204 Identities=42% Similarity=0.741 Sum_probs=170.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+|+|.+|+||||++|+|+|...|.++.+..+.|..+..... .+.+..+.|||||||.++...++.+..++..++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 58999999999999999999999999988777778888877766 58999999999999999888788888899999888
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+.+++|+||||+++. +++..+...++.+...||.+++++++||+|++|...+ ..+++++....+..++++++.|+.|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 889999999999999 9999999999999999999999999999999998887 6799999854456799999999999
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (277)
|+.|++......+...++.+|++.|..++.++++.+|.+++++.+++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~ 204 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEER 204 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHC
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHH
Confidence 999999844444456899999999999999999999999998877764
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=3.9e-34 Score=227.06 Aligned_cols=195 Identities=51% Similarity=0.855 Sum_probs=172.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+|+|.+|+|||||+|+|+|...+.++....+.|..+...... +.+..+.||||||+++.......+..++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 479999999999999999999999887776666777777666554 6888999999999999877666777888888887
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+.+++|++|+|+++. +++..+...++.+++.||..+++++++|+|++|.+.. ..+++++.. ....++.+++.|+.+
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 789999999999998 5999999999999999998888999999999999987 799999886 557899999999999
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
|+.|++... ++....++.+|++.|..+++++++.+|.+++
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~ 195 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDM 195 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999987 7788899999999999999999888888754
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.94 E-value=7.2e-26 Score=182.45 Aligned_cols=179 Identities=21% Similarity=0.289 Sum_probs=144.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
++..|+++|+||+|||||+|+|+|... +-.++.++|++.....+.+.+..++.++||||++.+ ...+.+.+.+..
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHH
Confidence 347899999999999999999999998 778889999999998888888999999999999985 455667788888
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|+++||+|+...++..+...++.++.. . .|+++++||+|...+ .. +..+.+. ....
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-~----~pvil~iNKID~~~~--~~~l~~~~~~---------~~~~ 143 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-K----TPVILVVNKIDKVKP--KTVLLKLIAF---------LKKL 143 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-C----CCeEEEEEccccCCc--HHHHHHHHHH---------HHhh
Confidence 8889999999999999977999999988888872 1 289999999998877 33 3333222 2211
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKR 222 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 222 (277)
. .|....+.||..+.+++.|++.+...+++ +..+|++++..
T Consensus 144 ~----~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe-g~~~yp~d~it 184 (298)
T COG1159 144 L----PFKEIVPISALKGDNVDTLLEIIKEYLPE-GPWYYPEDQIT 184 (298)
T ss_pred C----CcceEEEeeccccCCHHHHHHHHHHhCCC-CCCcCChhhcc
Confidence 1 23344567899999999999999999987 45567777743
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.91 E-value=3e-22 Score=165.06 Aligned_cols=192 Identities=22% Similarity=0.297 Sum_probs=134.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.+..+..+|+++|.+|+|||||+|+|+|...+..... .+.+....... ....+..+.||||||+.+...........+
T Consensus 33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~-~~~~G~~l~VIDTPGL~d~~~~~e~~~~~i 110 (313)
T TIGR00991 33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVS-RTRAGFTLNIIDTPGLIEGGYINDQAVNII 110 (313)
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEE-EEECCeEEEEEECCCCCchHHHHHHHHHHH
Confidence 3445678999999999999999999999886433221 12222222222 235788999999999998543223322222
Q ss_pred HHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
..++ ...++|++|||.+++ .+++..+...++.++..||.++++++||++||+|...+.+.++++|+.. ....++.+
T Consensus 111 k~~l--~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~~ 187 (313)
T TIGR00991 111 KRFL--LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLRV 187 (313)
T ss_pred HHHh--hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHHH
Confidence 2222 124799999997765 4888889999999999999999999999999999886556889999986 77778888
Q ss_pred HhhcC-----------CeEEEEeCCCcccccCh---------hHHHHHHHHHHHHHhh
Q 023779 173 LQLCD-----------NRCVLFDNKTKDEAKGT---------EQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~-----------~~~~~~~~~~~~s~~~~---------~~~~~L~~~i~~~~~~ 210 (277)
+.... ..+...+|...|..... .-+..|+..|-.+...
T Consensus 188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~ 245 (313)
T TIGR00991 188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISN 245 (313)
T ss_pred HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhC
Confidence 77533 23455555544432111 2477888888887654
No 5
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.89 E-value=5.1e-22 Score=175.93 Aligned_cols=165 Identities=21% Similarity=0.270 Sum_probs=123.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.+-..+|+|+|.+|+|||||+|+|+|...+.+..... .|+.+..... ...+..+.||||||+.++.... ....++..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~-~idG~~L~VIDTPGL~dt~~dq-~~neeILk 191 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEG-LVQGVKIRVIDTPGLKSSASDQ-SKNEKILS 191 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEE-EECCceEEEEECCCCCccccch-HHHHHHHH
Confidence 3445899999999999999999999998776654333 3444433322 3578899999999999875432 22334444
Q ss_pred HHhhc--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc-----ccHHHHhcccCCc
Q 023779 96 CLGMA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-----KTLEDFLGHECPK 167 (277)
Q Consensus 96 ~~~~~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~-----~~l~~~l~~~~~~ 167 (277)
.+..+ ..++|++|||+++. .+...++...++.+.++||.++|+++|||+||+|...+.| .++++|+.. ...
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~ 270 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSH 270 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChH
Confidence 33222 24689999999886 2333467789999999999999999999999999986422 589999986 778
Q ss_pred hHHHHHhhcCCeEEEEe
Q 023779 168 PLKEILQLCDNRCVLFD 184 (277)
Q Consensus 168 ~~~~~~~~~~~~~~~~~ 184 (277)
.++.++..|..++..|+
T Consensus 271 ~Lq~~Irq~~g~~~l~n 287 (763)
T TIGR00993 271 IVQQAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHHHHhcCcceecc
Confidence 89999999998766665
No 6
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.4e-21 Score=162.50 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+|+|++|||||||+|+|+|... +..++.+.|+...........+..+.+|||||+.... ..+...+...+..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~--~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI--SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE--eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 699999999999999999999875 2234444555544444444566789999999998642 22333444444555
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (277)
+..+|++++|+|++...+. +..++..+.. .+ .|+++|+||+|.... ..+.+.. ..+....+.
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~-~~----~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~~-- 138 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQN-LK----RPVVLTRNKLDNKFK--DKLLPLI--------DKYAILEDF-- 138 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHh-cC----CCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcCC--
Confidence 6788999999999844333 3444455544 22 389999999998644 3332222 222222121
Q ss_pred EEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
....+.||+.+.|+++|++.+...++. +...|+.++
T Consensus 139 ---~~v~~iSA~~g~gi~~L~~~l~~~l~~-~~~~~~~~~ 174 (270)
T TIGR00436 139 ---KDIVPISALTGDNTSFLAAFIEVHLPE-GPFRYPEDY 174 (270)
T ss_pred ---CceEEEecCCCCCHHHHHHHHHHhCCC-CCCCCCCcc
Confidence 123466888999999999999999866 344466554
No 7
>PRK00089 era GTPase Era; Reviewed
Probab=99.87 E-value=3.6e-21 Score=162.07 Aligned_cols=177 Identities=20% Similarity=0.319 Sum_probs=119.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+..|+|+|++|||||||+|+|+|... +..++.+.|+...........+..+.++||||+.+.. ..+.+.+.....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~--~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCce--eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 47899999999999999999999876 3333444555544444433455789999999998643 233444455555
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
.+...+|++++|+|++..++..+..++..+... ..|+++|+||+|..... ..+...+.. +....+
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~~~--------l~~~~~- 144 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLLEE--------LSELMD- 144 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHHHH--------HHhhCC-
Confidence 566788999999999865776666666665531 23999999999987321 233333332 222222
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
+....+.|+..+.++++|++.+...++. +...|+.++
T Consensus 145 ----~~~i~~iSA~~~~gv~~L~~~L~~~l~~-~~~~y~~~~ 181 (292)
T PRK00089 145 ----FAEIVPISALKGDNVDELLDVIAKYLPE-GPPYYPEDQ 181 (292)
T ss_pred ----CCeEEEecCCCCCCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 1222356778889999999999999876 334566554
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=1.1e-20 Score=160.79 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
..|+|+|.+|||||||+|.|+|... +-....+.+++...+....|.+..+.+|||+|+.+.. .+.+.+.+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~--AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRI--AIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCee--eEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 6799999999999999999999876 4444444444444444445888889999999998642 24566677777666
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+...+|++|||+|...+++..|..+.++++. .+. |+++|+||+|..... ....+|.. ..++..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~-~~k----pviLvvNK~D~~~~e-~~~~efys-----------lG~g~~ 142 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRR-SKK----PVILVVNKIDNLKAE-ELAYEFYS-----------LGFGEP 142 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh-cCC----CEEEEEEcccCchhh-hhHHHHHh-----------cCCCCc
Confidence 7788899999999998999999999998884 233 999999999965330 11111111 112233
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+ ..||..+.|+.+|++.+...++
T Consensus 143 ~-------~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 143 V-------PISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred e-------EeehhhccCHHHHHHHHHhhcC
Confidence 3 4488889999999999999873
No 9
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.86 E-value=6.4e-21 Score=143.18 Aligned_cols=156 Identities=21% Similarity=0.247 Sum_probs=97.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+++|.+|+|||||+|+|+|.... .+. ..+.|+......+ .+.+..+.++|+||.++......+ +.+.....
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~n-~pG~Tv~~~~g~~-~~~~~~~~lvDlPG~ysl~~~s~e--e~v~~~~l- 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VGN-WPGTTVEKKEGIF-KLGDQQVELVDLPGIYSLSSKSEE--ERVARDYL- 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EEE-STTSSSEEEEEEE-EETTEEEEEEE----SSSSSSSHH--HHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ecC-CCCCCeeeeeEEE-EecCceEEEEECCCcccCCCCCcH--HHHHHHHH-
Confidence 47999999999999999999999843 322 3455555544433 367899999999999876543322 22222221
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
....+|++++|+|++ .+. .+......+.+. +. |+++++||+|...+.+..+. ...+-+..+.+
T Consensus 75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g~----P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-GI----PVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-TS----SEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-CC----CEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 136789999999998 432 223444445543 33 99999999997765322221 23333444655
Q ss_pred EEEEeCCCcccccChhHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLV 204 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i 204 (277)
++. .++..+.++++|++.|
T Consensus 138 vi~------~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIP------VSARTGEGIDELKDAI 156 (156)
T ss_dssp EEE------EBTTTTBTHHHHHHHH
T ss_pred EEE------EEeCCCcCHHHHHhhC
Confidence 554 4666778999998875
No 10
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=5.1e-20 Score=157.26 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+++|.+|||||||+|+|+|..+. ..++...|+..........++.++.+|||||+..... .+...+.+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~---~l~~~~~r~~ 125 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG---SLEKAMVRCA 125 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc---cHHHHHHHHH
Confidence 3459999999999999999999988752 2333344444333334446788899999999875322 2334455555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++.++|++++|+|....+...+..++..+... + .|.++|+||+|.... .+.+ +.+.+....
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~ 188 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLND---------IKAFLTENH 188 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHH---------HHHHHHhcC
Confidence 5556789999999998866777666666666543 2 267889999996532 2222 222322222
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
.. ....+.||..+.|+++|++.|...++. +..+|++++
T Consensus 189 ~~----~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~ 226 (339)
T PRK15494 189 PD----SLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDD 226 (339)
T ss_pred CC----cEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCC
Confidence 11 112256888899999999999998876 555677666
No 11
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.85 E-value=5.6e-20 Score=149.78 Aligned_cols=133 Identities=28% Similarity=0.330 Sum_probs=99.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC---chHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG---SEFVGKE 92 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~---~~~~~~~ 92 (277)
.....+|+|+|.+|+|||||+|+|+|...+..+. ..+.|........ .+.+..+.||||||+.+.... ...+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~-~~~~T~~~~~~~~-~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSA-FQSETLRVREVSG-TVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCceEEEEEEEE-EECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 3456899999999999999999999988655442 2234544444433 367888999999999976421 1222223
Q ss_pred HHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+..++. ...+|+++||..++ .+++..+...++.+.+.||...+.++++|+||+|...+
T Consensus 106 I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 333332 23679999998776 57888889999999999999999999999999998865
No 12
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=1.8e-18 Score=132.67 Aligned_cols=173 Identities=18% Similarity=0.250 Sum_probs=115.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
|.+...-|+++|.+|||||||||+|+|......-...+|-|.....+.. ++ .+.+||.||++-...+. ...+.+.
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~-~~~lVDlPGYGyAkv~k-~~~e~w~ 94 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DD-ELRLVDLPGYGYAKVPK-EVKEKWK 94 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cC-cEEEEeCCCcccccCCH-HHHHHHH
Confidence 3345578999999999999999999997632222233455555544432 22 27899999999877665 3344444
Q ss_pred HHHhhcC---CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGMAK---DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~---~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
+.+..+. ....++++++|+.......|..+++++... +. |++|++||+|++.. ......+.. ..+
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-~i----~~~vv~tK~DKi~~--~~~~k~l~~-----v~~ 162 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-GI----PVIVVLTKADKLKK--SERNKQLNK-----VAE 162 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CeEEEEEccccCCh--hHHHHHHHH-----HHH
Confidence 4443322 347889999999988888899999999985 43 89999999999976 444433333 332
Q ss_pred HHhh-cCCe--EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQL-CDNR--CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~-~~~~--~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+.. .... +..| |+....++++|...|...+..
T Consensus 163 ~l~~~~~~~~~~~~~------ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 163 ELKKPPPDDQWVVLF------SSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HhcCCCCccceEEEE------ecccccCHHHHHHHHHHHhhc
Confidence 2222 1222 2222 334456799999998877643
No 13
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=3e-18 Score=148.24 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=111.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
-|+|||.+|||||||+|+|++... .++..+.|+.........+.+ ..++|+||||+.........+...+...
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~---~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~--- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP---KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH--- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc---cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH---
Confidence 699999999999999999998764 334444555444444433443 5699999999986543333344455444
Q ss_pred cCCCccEEEEEEeCCCCC---C--HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 100 AKDGIHAFLVVFSVTNRF---S--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~---~--~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++++++|+|++ .+ . .....+++.+......-..+|++||+||+|.... ..+.+.+. .+..
T Consensus 235 -i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~l~--------~l~~ 302 (390)
T PRK12298 235 -LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEERAK--------AIVE 302 (390)
T ss_pred -HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHHHH--------HHHH
Confidence 34669999999987 22 1 1223444444443211123499999999997654 33333332 2222
Q ss_pred hcCC--eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHH
Q 023779 175 LCDN--RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELK 221 (277)
Q Consensus 175 ~~~~--~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 221 (277)
..+. .+ ...|+....++.+|++.|...++. ...+|++++.
T Consensus 303 ~~~~~~~V------i~ISA~tg~GIdeLl~~I~~~L~~-~~~~~~~~~~ 344 (390)
T PRK12298 303 ALGWEGPV------YLISAASGLGVKELCWDLMTFIEE-NPREEAEEAE 344 (390)
T ss_pred HhCCCCCE------EEEECCCCcCHHHHHHHHHHHhhh-CcccCCcccc
Confidence 2221 22 245788889999999999999876 3444665554
No 14
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.6e-18 Score=133.21 Aligned_cols=172 Identities=22% Similarity=0.251 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.++|+++|++|+|||||+|+|++........ ..+.+...... .....+..+.+|||||+.+.......+.........
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDV-PFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceee-EEEECCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3789999999999999999999876422221 11222222222 223567778999999987653222221111111112
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
..+.++|++++|+|+..+.+......+..+... + .|+++++||+|.............+. +...+.....
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE-G----KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc-C----CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 234678999999999866665555444443321 2 38999999999765411122222222 2222211111
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
......|++.+.++.++++.+.++
T Consensus 150 -----~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 -----APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -----CceEEEeccCCCCHHHHHHHHHHh
Confidence 122356778888999998887654
No 15
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.81 E-value=3.5e-18 Score=131.50 Aligned_cols=157 Identities=20% Similarity=0.236 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.|+++|++|||||||+|+|++....... ....+.|......... +. +..+.+|||||.. .+...+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~DtpG~~-----------~~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLD-LPSGKRLGFIDVPGHE-----------KFIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEE-ecCCcEEEEEECCChH-----------HHHHHHH
Confidence 5899999999999999999975321110 1112334444333333 33 6789999999943 2333333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc--
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-- 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-- 176 (277)
.++.++|++++|+|++..........+..+... +. +|+++|+||+|.... ..+...... +.+.+...
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 446788999999999844434444444444332 32 389999999997654 223222222 34444332
Q ss_pred -CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+..+ .+.|++.+.+++++++.+..
T Consensus 139 ~~~~~------~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 ADAPI------FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcE------EEEeCCCCcCHHHHHHHHhh
Confidence 1222 25677888999999988754
No 16
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.80 E-value=1.8e-18 Score=133.16 Aligned_cols=164 Identities=22% Similarity=0.256 Sum_probs=101.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|++|+|||||+|+|+|....... ....++...........+..+.+|||||+.+..... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVS--PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEecc--CCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 478999999999999999999987653222 122232222222222345678999999988643221 122323333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC-
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD- 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~- 177 (277)
.....+|++++|+|++..++.....+...+... + .|+++|+||+|..... ..+.+.+.. +....+
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-~----~~~iiv~nK~Dl~~~~-~~~~~~~~~--------~~~~~~~ 143 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-K----TPVILVLNKIDLVKDK-EDLLPLLEK--------LKELGPF 143 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-C----CCEEEEEEchhccccH-HHHHHHHHH--------HHhccCC
Confidence 345778999999999955555565655555542 2 2899999999976321 333333322 212211
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..+ ...|++.+.+++++++.|...
T Consensus 144 ~~~------~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 144 AEI------FPISALKGENVDELLEEIVKY 167 (168)
T ss_pred Cce------EEEEeccCCChHHHHHHHHhh
Confidence 122 245666778899999988754
No 17
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=8.1e-18 Score=149.43 Aligned_cols=176 Identities=23% Similarity=0.267 Sum_probs=112.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|++|+|||||+|+|++......+. ..+.|....... ..+.+..+.+|||||+.........+........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTP-FERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEE-EEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999876432221 123333333232 3367788999999998754432222211111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..+...+|++++|+|+..+++..+..++..+... + .|++||+||||.... .....+... +...+....
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhccccc
Confidence 2234677999999999988888887776666542 3 389999999998744 333333222 332222111
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
+.+....||+.+.++.++++.+........
T Consensus 318 -----~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 318 -----YAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred -----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 122335688889999999999988876543
No 18
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=138.02 Aligned_cols=186 Identities=18% Similarity=0.206 Sum_probs=119.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+.+|+++|.||+|||||||+|++.+..+ ....+.++.........+++..++||||||+++....+.+..+.+..
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~--v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d-- 113 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKE--VSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD-- 113 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCce--eeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHH--
Confidence 45788999999999999999999654422 22233334333333445677889999999999876655444444444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc----------ccccHHHHhcccCCc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----------HEKTLEDFLGHECPK 167 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~----------~~~~l~~~l~~~~~~ 167 (277)
..+..|++|+++++.++.-..+..++.-+.-.... +++++++|++|+..+ +...+.++++.+ -.
T Consensus 114 --~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k-~~ 187 (296)
T COG3596 114 --YLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK-AE 187 (296)
T ss_pred --HhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH-HH
Confidence 44566999999999966656666665655544332 489999999998865 233445555431 11
Q ss_pred hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
.+.+++.. ..+....+.....++..|...+...++..........+
T Consensus 188 ~~~~~~q~-------V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 188 ALGRLFQE-------VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred HHHHHHhh-------cCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhh
Confidence 12222222 22222234566789999999999998865444433333
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=147.34 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=128.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH-HHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK-EIVKC 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~-~~~~~ 96 (277)
..++|+|+|.+|+|||||+|+|+|+.- .-.++...|+.........++++.+.++||.|+-.-....+.+.. ...+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR--~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEER--VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCce--EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 459999999999999999999999885 334445555555554444589999999999998643222111000 01111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
+ .+...++++++|+|++.+++..+..+...+.+. |. +++||+||||.........+.+... +...+...
T Consensus 255 ~-~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g~----~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l 323 (444)
T COG1160 255 L-KAIERADVVLLVIDATEGISEQDLRIAGLIEEA-GR----GIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL 323 (444)
T ss_pred H-hHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-CC----CeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc
Confidence 1 123456999999999999999999998888874 54 7999999999876522344444443 44444333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE 226 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (277)
+ |......||..+.++..|++.+...........-+..+....+.
T Consensus 324 ~-----~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~ 368 (444)
T COG1160 324 D-----FAPIVFISALTGQGLDKLFEAIKEIYECATRRISTSLLNRVLED 368 (444)
T ss_pred c-----CCeEEEEEecCCCChHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 3 22223458888999999999999988765554444444443333
No 20
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=8.1e-18 Score=149.25 Aligned_cols=177 Identities=24% Similarity=0.264 Sum_probs=112.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|.+|+|||||+|+|++........ ..+.|....... ...++..+.+|||||+.......+.+........
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSD-IAGTTRDSIDIP-FERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCC-CCCceECcEeEE-EEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 45799999999999999999999876422211 123333332232 2357778999999998764432222211111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++..+|++++|+|+..+++..+..++..+... + .|+++|+||||.... ....+.+... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 2245678999999999988888877766665542 3 389999999998722 1334443333 333222222
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
. ......||+.+.++.++++.+........
T Consensus 318 ~-----~~vi~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 318 F-----APIVFISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred C-----CceEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 1 12235688899999999999998876543
No 21
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.80 E-value=1.5e-18 Score=125.89 Aligned_cols=116 Identities=24% Similarity=0.311 Sum_probs=77.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+|+|.+|+|||||+|+|++......+.. .+.|... .+....+++..+.++||||+.+........ +.+...+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~-~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDP-VYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSE-EEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeee-eeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 589999999999999999998654333322 3344444 333334688888999999998754322211 2233344433
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
..+|++++|++++......+..++++++ .+ +|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~----~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--NK----KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--TT----SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--cC----CCEEEEEcC
Confidence 7789999999987533444566666663 22 399999998
No 22
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=6.8e-18 Score=130.56 Aligned_cols=163 Identities=22% Similarity=0.169 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch-HHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~~~~ 98 (277)
++|+++|++|+|||||+|+|++....... ....|........ .+.+..+.+|||||+.+...... .+... .+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~---~~~ 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHF-DYKYLRWQVIDTPGLLDRPLEERNTIEMQ---AIT 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEE-ccCceEEEEEECCCcCCccccCCchHHHH---HHH
Confidence 47999999999999999999987642211 1122333332222 24567899999999865322111 11111 111
Q ss_pred hcCCCccEEEEEEeCCCCCC--HH-HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 99 MAKDGIHAFLVVFSVTNRFS--QE-EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
......|++++|+|++.+.+ .. ...++..+...+. ..|+++|+||+|.... ..+.. .. .+...
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~-~~--------~~~~~ 140 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE-IE--------EEEEL 140 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH-HH--------Hhhhh
Confidence 11123589999999983322 12 2345555554432 2499999999998655 33322 11 11111
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
....+ ..+|++.+.+++++++++...+
T Consensus 141 ~~~~~------~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEV------LKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCce------EEEEecccCCHHHHHHHHHHHh
Confidence 11122 2568899999999999987764
No 23
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=2e-18 Score=142.65 Aligned_cols=215 Identities=17% Similarity=0.229 Sum_probs=131.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC--cccc--------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKA--FKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~--~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
+|+++|++|+|||||+++|+.... ...+ ....+.|.......+. +.+..+.+|||||+.+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence 489999999999999999962110 0000 1122445555555444 78899999999997642
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
..+... ++..+|++++|+|+..+....+...+..+... +. |+++++||+|.... ..+..+..
T Consensus 78 -----~~~~~~----~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~~----p~ivviNK~D~~~a---~~~~~~~~- 139 (270)
T cd01886 78 -----TIEVER----SLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-NV----PRIAFVNKMDRTGA---DFFRVVEQ- 139 (270)
T ss_pred -----HHHHHH----HHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHHHHHH-
Confidence 223333 34556999999999877777777777766653 32 89999999997643 33333333
Q ss_pred CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh---hcCCC-----CCChHHHHHHHHHHHHHHHHHH
Q 023779 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV---QNGGQ-----PYTDELKRGATELRDKKAEVDS 236 (277)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 236 (277)
++..+ +...+...- +.++. .++..+.+.+....- ...+. ..+.++...++++ +.+.++.
T Consensus 140 ----l~~~l---~~~~~~~~~--Pisa~--~~f~g~vd~~~~~a~~~~~~~~~~~~~~~ip~~~~~~~~~~--r~~l~e~ 206 (270)
T cd01886 140 ----IREKL---GANPVPLQL--PIGEE--DDFRGVVDLIEMKALYWDGELGEKIEETEIPEDLLEEAEEA--REELIET 206 (270)
T ss_pred ----HHHHh---CCCceEEEe--ccccC--CCceEEEEccccEEEecccCCCceeEEecCCHHHHHHHHHH--HHHHHHH
Confidence 33333 333222222 22221 222233333321110 10111 2455666666666 6667788
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779 237 LKEYSKREISKLMGQMQESYEDRIKRMAEMRAG 269 (277)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (277)
+.+.+++.++++.+..+-..++..+.+++.+.+
T Consensus 207 vae~dd~L~e~yl~~~~~~~~el~~~l~~~~~~ 239 (270)
T cd01886 207 LAEFDDELMEKYLEGEEITEEEIKAAIRKGTIA 239 (270)
T ss_pred HhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Confidence 888999999999999888887877877776654
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.6e-17 Score=148.32 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=114.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|++|||||||+|+|++....... ...+.|....... ..+++..+.+|||||+........ ..+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~-~~~~~~~~~l~DTaG~~~~~~~~~--~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSL-IELGGKTWRFVDTAGLRRRVKQAS--GHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEE-EEECCEEEEEEECCCccccccccc--hHHHHHHH
Confidence 4589999999999999999999987642221 1223333332222 336788899999999753221110 11222211
Q ss_pred --hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 --~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
..++..+|++++|+|++.+.+..+..++..+... + .|++||+||+|.... .....+... +...+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~-~----~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~ 353 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA-G----RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ 353 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence 1245788999999999977887777666555442 2 389999999998653 222111111 2111111
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATE 226 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (277)
... ......||+.+.++.+|++.+.+.+.......-+..+....++
T Consensus 354 ~~~-----~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~i~t~~ln~~~~~ 399 (472)
T PRK03003 354 VPW-----APRVNISAKTGRAVDKLVPALETALESWDTRIPTGRLNAWLGE 399 (472)
T ss_pred CCC-----CCEEEEECCCCCCHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 110 1122568999999999999999988765544434444333333
No 25
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=6e-18 Score=131.07 Aligned_cols=164 Identities=21% Similarity=0.197 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.|+++|++|||||||+|+|++... ..+.. .+.|........ .+.+. .+.+|||||+.+.......+...+...
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~-~~~t~~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADY-PFTTLVPNLGVV-RVDDGRSFVVADIPGLIEGASEGKGLGHRFLRH--- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCC-CccccCCcceEE-EcCCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence 489999999999999999998654 11111 122322222222 24554 899999999864322211222222222
Q ss_pred cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-
Q 023779 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (277)
+..+|++++|+|++.+ -+... ..+.+.+..........|+++|+||+|.... ......+. .+....
T Consensus 76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~--------~~~~~~~ 144 (170)
T cd01898 76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFELLK--------ELLKELW 144 (170)
T ss_pred -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHHHH--------HHHhhCC
Confidence 2356999999999833 12222 3444445443221123589999999997655 33333222 233332
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...++ ..|++.+.++.++++.+.+.
T Consensus 145 ~~~~~------~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVF------PISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEE------EEecCCCCCHHHHHHHHHhh
Confidence 22222 45777889999999888654
No 26
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=8.8e-18 Score=131.39 Aligned_cols=144 Identities=18% Similarity=0.308 Sum_probs=91.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
|.....+|+++|++|+|||||+|+|++...........+.|..+..+.. + ..+.+|||||+......... ...+.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~~~~-~~~~~ 88 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVSKEE-KEKWQ 88 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCChhH-HHHHH
Confidence 4466789999999999999999999987521111112233444433322 2 36899999998764432211 12222
Q ss_pred HHHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
..+.. ....+|++++|+|++.+++..+...+.++... + .|+++++||+|.... ......+.. +++
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-~----~pviiv~nK~D~~~~--~~~~~~~~~-----i~~ 156 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-G----IPVLIVLTKADKLKK--SELNKQLKK-----IKK 156 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECcccCCH--HHHHHHHHH-----HHH
Confidence 22221 22356899999999977888887766666542 3 389999999998754 444444444 555
Q ss_pred HHhh
Q 023779 172 ILQL 175 (277)
Q Consensus 172 ~~~~ 175 (277)
.+..
T Consensus 157 ~l~~ 160 (179)
T TIGR03598 157 ALKK 160 (179)
T ss_pred HHhh
Confidence 5544
No 27
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.79 E-value=2.6e-17 Score=130.54 Aligned_cols=172 Identities=15% Similarity=0.270 Sum_probs=105.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.+..++|+++|++|+|||||+|+|++...........+.|....... .+..+.||||||+.....+.. ....+..
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~ 95 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQK 95 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHH
Confidence 34568899999999999999999998652222122223333333221 146799999999875432221 1222222
Q ss_pred HHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 96 CLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 96 ~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.+.. ....++++++|+|++.+.+..+..+..++.. .+ .|+++++||+|.... ......... +...
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~ 163 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKA 163 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHH
Confidence 2222 2345578889999876666666555555543 23 289999999998755 333333332 3333
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+......++ +.|+..+.+++++++.|.+++.+
T Consensus 164 l~~~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 164 LKFGDDEVI------LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHhcCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence 332222232 45777888999999999887653
No 28
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.79 E-value=4.6e-18 Score=129.79 Aligned_cols=155 Identities=19% Similarity=0.196 Sum_probs=99.8
Q ss_pred EEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCC
Q 023779 23 VLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (277)
Q Consensus 23 ~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (277)
+++|.+|+|||||+|+|++........ ..+.|....... ....+..+.+|||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~-~~~~t~~~~~~~-~~~~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVED-TPGVTRDRIYGE-AEWGGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecC-CCCceeCceeEE-EEECCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 589999999999999999875322211 223333333333 335778899999999986432 223334434334456
Q ss_pred CccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-eEE
Q 023779 103 GIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-RCV 181 (277)
Q Consensus 103 ~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~ 181 (277)
.+|++++|+|+..+++..+...+.+++.. + .|+++|+||+|.... ... .. .+...+. ++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~---~~---------~~~~~~~~~~- 135 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDE---AA---------EFYSLGFGEP- 135 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHH---HH---------HHHhcCCCCe-
Confidence 78999999999866666666666666553 2 399999999998755 221 11 1112222 22
Q ss_pred EEeCCCcccccChhHHHHHHHHHHHH
Q 023779 182 LFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 182 ~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...|++.+.+++++++.+.+.
T Consensus 136 -----~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 136 -----IPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -----EEEecccCCCHHHHHHHHHhh
Confidence 245777888999999988654
No 29
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.78 E-value=1.3e-17 Score=127.27 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|++|+|||||+|+|++......+. ..+.+........ .+.+..+.+|||||+.+.... ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD-IAGTTRDVIEESI-DIGGIPVRLIDTAGIRETEDE---IEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC-CCCCccceEEEEE-EeCCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence 689999999999999999999876422221 1223333322222 356778999999998865432 11111222223
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
.+..+|++++|+|+..+.+..+...+.. ..+ .|+++|+||+|.... ... . ....+..
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~----~~vi~v~nK~D~~~~--~~~---~-----------~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PAD----KPIIVVLNKSDLLPD--SEL---L-----------SLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hcC----CCEEEEEEchhcCCc--ccc---c-----------cccCCCc
Confidence 4567899999999996565555444332 222 399999999997755 211 0 0112233
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
++ ..|+..+.++++|++.|...+
T Consensus 134 ~~------~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 II------AISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eE------EEECCCCCCHHHHHHHHHHhh
Confidence 33 356677789999999987754
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=9.9e-18 Score=148.68 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|||||||+|.|++...... ....+.|....... ..+.+..+.+|||||+... ...+...+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~-~~~~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGD-AEWGGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEE-EEECCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999998763111 11234444444443 3478889999999998642 233455566666666
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (277)
+..+|++++|+|+..+++..+..+..++++. + +|+++|+||+|.... ... ..++. ..+.
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~--~~~-----------~~~~~-~lg~-- 134 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKE--DAV-----------AAEFY-SLGF-- 134 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCcc--ccc-----------HHHHH-hcCC--
Confidence 7788999999999977888888888888763 3 389999999997654 111 11111 1121
Q ss_pred EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
......|+..+.++.+|++.+...++.
T Consensus 135 ---~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 135 ---GEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred ---CCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 112245778888999999998887643
No 31
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.8e-17 Score=138.17 Aligned_cols=167 Identities=18% Similarity=0.148 Sum_probs=102.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC-cceeeEEEEEeee-CCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSG-VTKTCEMKTTVLK-DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.|+|||.+|||||||+|+|++..+ . ++..+ +|...... ...+ ++..+.+|||||+.+.......+...+.+.+
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~-~--va~ypfTT~~p~~G-~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi- 234 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKP-K--IADYPFTTLHPNLG-VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI- 234 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCC-c--cCCCCCceeCceEE-EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh-
Confidence 589999999999999999998653 1 22222 33333333 3334 5677999999999764433333444444443
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++++++|+|++..-+..+ ..+...+......-..+|++||+||+|.... ....... ++.+....+
T Consensus 235 ---e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~~-------~~~~~~~~~ 302 (335)
T PRK12299 235 ---ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREKR-------AALELAALG 302 (335)
T ss_pred ---hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHHH-------HHHHHHhcC
Confidence 45699999999983323333 2344444443111123599999999997654 2221111 122222222
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..++ ..|+..+.++++|++.|...+..
T Consensus 303 ~~i~------~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 303 GPVF------LISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CCEE------EEEcCCCCCHHHHHHHHHHHHHh
Confidence 2332 45888889999999999888764
No 32
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.77 E-value=3.1e-17 Score=126.57 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=96.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.++|+++|++|+|||||++++.+..+..... ............. .++ ..+.+|||||.. .+...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLE-IEGKRVKLQIWDTAGQE-----------RFRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHH
Confidence 4899999999999999999998765422211 1111222222222 344 368899999932 23333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....++.+|++++|+|++..-+... ..++..+....... .|+++|+||+|..........+ ...+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFEE---------ACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 3445678899999999984322222 34555554432223 3899999999976441111111 2333333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+...+ .+.|++.+.++.++++.+.+.
T Consensus 138 ~~~~~~-----~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 138 NGMLAV-----LETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cCCcEE-----EEEECCCCCCHHHHHHHHHHh
Confidence 332222 256888889999999988653
No 33
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=2e-17 Score=147.70 Aligned_cols=164 Identities=21% Similarity=0.192 Sum_probs=109.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|+|.+|||||||+|+|++....... ...+.|....... ..+.+..+.+|||||+... ...+...+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~-~~~~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYD-AEWNGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEE-EEECCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 3468999999999999999999987642222 2234444444443 3467888999999998632 122334455555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++..+|++|+|+|++.+.+..+..+..++... + .|+++|+||+|.... .. + ...+. ..+
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-~----~piilV~NK~Dl~~~--~~-~----------~~~~~-~~g 172 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-G----KPVILAANKVDDERG--EA-D----------AAALW-SLG 172 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccCCcc--ch-h----------hHHHH-hcC
Confidence 5556788999999999977777777777777642 2 399999999996532 10 0 11111 111
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. .....||..+.++.+|++.|...+..
T Consensus 173 ~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG-----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 11 11256888889999999998877644
No 34
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.6e-17 Score=125.75 Aligned_cols=164 Identities=17% Similarity=0.187 Sum_probs=112.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
-.+|+|+|.+|||||.|+..+.+..+.....+..++-... .... +++. .+.||||.| ++++...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~--rt~e-~~gk~iKlQIWDTAG-----------QERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKI--RTVE-LDGKTIKLQIWDTAG-----------QERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEE--EEee-ecceEEEEEeeeccc-----------cHHHhhh
Confidence 4799999999999999999999888755544433333332 2222 3444 589999999 3567777
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+|+++|++|+|+|++..-+... ..|+..+.......+ |.++|.||+|.... ..+..-. .+.+...
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~--~~v~~~~-------a~~fa~~ 143 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENV--PKLLVGNKCDLTEK--RVVSTEE-------AQEFADE 143 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCC--CeEEEeeccccHhh--eecCHHH-------HHHHHHh
Confidence 7888999999999999994433333 455666666655554 99999999997755 2221111 2234344
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
.+-..+ .+.||+...++++.+..+...+....
T Consensus 144 ~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 144 LGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred cCCcce-----eecccCCccCHHHHHHHHHHHHHHhc
Confidence 443322 25688888899999998888776543
No 35
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.77 E-value=1.4e-17 Score=133.10 Aligned_cols=163 Identities=25% Similarity=0.235 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|||||||+|.|++......+. ...|...........+...+.+|||||+.+... ......+...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~ 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQ--LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCc--cceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH
Confidence 34799999999999999999999876432221 122322222223322334899999999865321 12222232222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+..+|++++|+|++.+.+... ..+.+++......+ .|+++|+||+|.... .... . .....
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~----~--------~~~~~ 178 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE----E--------RLEAG 178 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH----H--------HhhcC
Confidence 23457899999999984444433 23444555432222 499999999998655 2222 1 11111
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...+ ...|++.+.++.++++.|...
T Consensus 179 ~~~~------~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 179 RPDA------VFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCce------EEEEcCCCCCHHHHHHHHHhh
Confidence 1222 245778889999999988654
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.77 E-value=3e-17 Score=126.70 Aligned_cols=160 Identities=17% Similarity=0.117 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||+|++++........ ............. .. ...+.+|||||.. .+....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVS-VRNKEVRVNFFDLSGHP-----------EYLEVR 66 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCeEEEEEEEECCccH-----------HHHHHH
Confidence 479999999999999999999877533221 1111111111121 22 3458899999953 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc---CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK---NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
..++.++|++++|+|++.+-+... ..++..+...... ....|+++|+||+|.........++ ...+.
T Consensus 67 ~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 137 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWA 137 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHH
Confidence 445678899999999984322222 3344444444332 1235999999999976320011111 22233
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
...+..++ ..|++.+.++.++++.|.+.+
T Consensus 138 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 138 ESKGFKYF------ETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHHHH
Confidence 33343433 457778899999999987654
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.77 E-value=3.6e-17 Score=126.21 Aligned_cols=159 Identities=16% Similarity=0.151 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++++++..+.....+ +........... .++ ..+.+|||||.. .+....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~l~Dt~g~~-----------~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVS--TVGIDFKVKTVF-RNDKRVKLQIWDTAGQE-----------RYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence 6899999999999999999998765222111 111111111111 233 458899999943 233333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++.++|++++|+|++++-+... ..++..+....... .|+++|+||+|.........+. ...+....
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSER---------GRQLADQL 136 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHH---------HHHHHHHc
Confidence 455788999999999983322221 23333343332222 4899999999976441011111 22333343
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ +.|++.+.|+.+|++.+...+.
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 137 GFEFF------EASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 43333 4577888999999999887654
No 38
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.76 E-value=4.7e-17 Score=125.70 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|+|||||++++++..+.... ..|...... .....++ ..+.+|||||.. .+...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 67 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE-----------RFRAV 67 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEEECCEEEEEEEEECCCcH-----------HHHHH
Confidence 68999999999999999999977542221 222221111 1111333 357899999932 33333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++.+-+... ..++..+....... .|+++|.||+|.... ..+.. . ....+...
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~--~~~~~--~-----~~~~~~~~ 136 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQ--RDVTY--E-----EAKQFADE 136 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cCcCH--H-----HHHHHHHH
Confidence 4445788999999999984322222 23333333332222 489999999997644 11110 0 12333333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.+..++ ++|++.+.|+.+++..+...+
T Consensus 137 ~~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 137 NGLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 333333 467888899999988776554
No 39
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=5.3e-17 Score=125.51 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||++++++..+........ .......... ..+ ..+.+|||||.. .+...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--~~~~~~~~~~-~~~~~~~l~l~D~~g~~-----------~~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--GIDFKIRTIE-LDGKKIKLQIWDTAGQE-----------RFRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--cceEEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHH
Confidence 4799999999999999999999876532222111 1122212222 333 357899999933 22233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....+.++|++++|+|++.+-+... ..++..+......+ .|+++|+||+|.........++ ...+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEE---------GEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHH
Confidence 3345678899999999984322222 23334444432222 4999999999976431011111 2333344
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+..++ +.|+..+.++.+++..+.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 138 YGIKFL------ETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 343333 5677788999999999887653
No 40
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.76 E-value=2.1e-17 Score=131.71 Aligned_cols=166 Identities=13% Similarity=0.084 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeee--------------------------------
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLK-------------------------------- 66 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~-------------------------------- 66 (277)
++|+++|++|+|||||+.+|++... ...+....+.+....+......
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3699999999999999999987632 2222223333444333322110
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
....+.||||||.. .+...+......+|++++|+|+..+ ........+..+.. .+. .|++||+|
T Consensus 81 ~~~~i~~iDtPG~~-----------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-----------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-----------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 12678999999932 2333444445677999999999842 33344445554433 232 37999999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
|+|.... ..+...++. +++++...... .......|++.+.++++|++.|...++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 334333333 44444321100 0112355888889999999999887654
No 41
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.76 E-value=7.5e-17 Score=126.76 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=103.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|..|||||||+.++.+..+ ... .....+.......+ ..++ ..+.+|||||.. .+...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~-~~~t~~~~~~~~~i-~~~~~~~~l~iwDt~G~~-----------~~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESP-YGYNMGIDYKTTTI-LLDGRRVKLQLWDTSGQG-----------RFCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCC-CCCcceeEEEEEEE-EECCEEEEEEEEeCCCcH-----------HHHHH
Confidence 48999999999999999999986543 111 11112222211212 2344 457899999943 33344
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++.+.+... ..++..+.... +. .|++||.||.|+........++ .+.+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~~--~piilVGNK~DL~~~~~v~~~~---------~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-PG--VPKILVGNRLHLAFKRQVATEQ---------AQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccchhccCCCHHH---------HHHHHHH
Confidence 4456789999999999985444444 34555555443 23 4999999999975430011111 3344444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~ 213 (277)
.+..++ ++||+.+.+++++++.+.+.+....+
T Consensus 140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~ 171 (189)
T cd04121 140 NGMTFF------EVSPLCNFNITESFTELARIVLMRHG 171 (189)
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcC
Confidence 454444 56888899999999999887665444
No 42
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.76 E-value=4.6e-17 Score=144.02 Aligned_cols=158 Identities=22% Similarity=0.280 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|++|+|||||+|+|++........ ..+.|....... ..+++..+.+|||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~-i~~~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTD-IAGTTRDVIEEH-INLDGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcccccEEEE-EEECCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 45899999999999999999999876421111 123333332232 33678889999999987532 22111111112
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
...+..+|++++|+|++.+.+..+...+. . .. + .|+++|+||+|.... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~---~-~~-~--~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILE---E-LK-D--KPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHH---h-cC-C--CCcEEEEEhhhcccc--chhh---------------hccC
Confidence 23456789999999998665555443332 2 11 2 399999999997644 1111 0011
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+ ...|++.+.+++.|++.|...+..
T Consensus 345 ~~~------i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPV------IRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred Cce------EEEEeeCCCCHHHHHHHHHHHHhh
Confidence 122 245888889999999999998764
No 43
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=1.6e-17 Score=130.85 Aligned_cols=165 Identities=21% Similarity=0.182 Sum_probs=102.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS 86 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 86 (277)
+|+++|.+|+|||||+|+|++......... ..+.+........ .+.+..+.+|||||..+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATF-EWPDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEE-eeCCEEEEEEeCCCcHH-----
Confidence 489999999999999999997765322111 0122222222222 24567799999999653
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~ 166 (277)
+......++..+|++++|+|+...........+..+.. .+ .|+++|+||+|.... ..+......
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GG----LPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CC----CCeEEEEECCCCcch--hcHHHHHHH---
Confidence 22222233456799999999986665555555555543 22 399999999998764 344443333
Q ss_pred chHHHHHhhcCCe--------EEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 167 KPLKEILQLCDNR--------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+.+.+...+.. .....+..+.|++.+.++.+++..+...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 44444332210 001122235678888999999999888764
No 44
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.76 E-value=1.4e-16 Score=126.42 Aligned_cols=174 Identities=16% Similarity=0.121 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+|+|.+|||||||++.+++..+... .....+...... ...+++ ..+.+|||||....... ...+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRP-AVVLSGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCcccccccee-EEEECCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3799999999999999999998765222 111111111111 122455 35779999998643211 122222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+..+|++++|+|++.+.+... ..+++.+..... .....|++||+||+|.... ...... .++.+...
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~-------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRH-------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHH-------HHHHHHHH
Confidence 334578899999999984333222 233344444321 1122499999999997543 111100 02222221
Q ss_pred -cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCC
Q 023779 176 -CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (277)
Q Consensus 176 -~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~ 214 (277)
.+..++ ++|++.+.++.+|++.+...+-.+++.
T Consensus 146 ~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 146 SWKCGYL------ECSAKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred hcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCCC
Confidence 122222 568888999999999998877665443
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=5.7e-17 Score=128.14 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++..... +....+........ ....++ ..+.||||||-. .+....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~-~~~~~t~~~~~~~~-~~~~~~~~~~~~i~Dt~G~~-----------~~~~~~ 67 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLN-GNFIATVGIDFRNK-VVTVDGVKVKLQIWDTAGQE-----------RFRSVT 67 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-cCcCCcccceeEEE-EEEECCEEEEEEEEeCCCcH-----------HHHHhh
Confidence 479999999999999999998766422 11111111111111 112333 358899999932 233333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++.++|++++|+|++.+-+..+ ..++..+....... .|+++|+||+|.... ..+.. . ....+....
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~--~~~~~--~-----~~~~l~~~~ 136 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGE--RVVKR--E-----DGERLAKEY 136 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhc--cccCH--H-----HHHHHHHHc
Confidence 445678899999999984322222 34455555543333 399999999997533 11100 0 123343444
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+..++ +.|++.+.++.+|+..|.+.+...
T Consensus 137 ~~~~~------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 137 GVPFM------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 44443 457788899999999998887653
No 46
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.76 E-value=3e-17 Score=129.39 Aligned_cols=168 Identities=19% Similarity=0.278 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc----------------CCCCCcceeeEEEEEe-eeCCceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----------------AGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~ 80 (277)
+.++|+++|+.++|||||+++|++....... ....+.|......... ...++.++++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3479999999999999999999853321000 0012344444444332 3678899999999954
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~ 160 (277)
+ +......+...+|++++|+|+..++.......+..+... +. |++||+||+|.. . ..+...
T Consensus 82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~-~~----p~ivvlNK~D~~-~--~~~~~~ 142 (188)
T PF00009_consen 82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL-GI----PIIVVLNKMDLI-E--KELEEI 142 (188)
T ss_dssp H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT-T-----SEEEEEETCTSS-H--HHHHHH
T ss_pred c-----------eeecccceecccccceeeeeccccccccccccccccccc-cc----ceEEeeeeccch-h--hhHHHH
Confidence 2 222233334567999999999878888888888877664 33 899999999987 3 455555
Q ss_pred hcccCCchHH-HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 161 LGHECPKPLK-EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 161 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
++. +. .+++..+..-..+-+..+.|+..+.++..|++.+...+|
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 554 44 444444321000000114578888999999999988765
No 47
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.76 E-value=8.6e-17 Score=127.63 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.|+++|..|||||||++.+....+... ...+.+.......+ ..++ ..+.+|||+|.. .+.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~--~~~Ti~~~~~~~~i-~~~~~~v~l~iwDtaGqe-----------~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA--CKSGVGVDFKIKTV-ELRGKKIRLQIWDTAGQE-----------RFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc--CCCcceeEEEEEEE-EECCEEEEEEEEeCCCch-----------hhHHHHH
Confidence 589999999999999999986654221 11112222222222 2444 457899999943 3334445
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC- 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~- 176 (277)
.+++++|++++|+|++.+-+..+ ..++..+......+ .|++||.||+|.... ..+.... ...+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~~-------~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQQ-------GEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHHH-------HHHHHHhcC
Confidence 56789999999999995444333 34445555443333 399999999997543 2221111 12222222
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ++||+.+.++.+++..+.+.+..
T Consensus 137 ~~~~~------etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 137 GMRFC------EASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 22222 56888999999999998876643
No 48
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.76 E-value=7.2e-17 Score=124.91 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=94.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||++.+++...........+ ......... .++ ..+.+|||||.. ++....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~i~Dt~G~~-----------~~~~~~ 70 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMIT-IDGKQIKLQIWDTAGQE-----------SFRSIT 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 7999999999999999999998765332221112 222112122 233 368899999932 233334
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++.+-+... ..++..+.....+. .|++||.||.|.........++ ...+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 445678899999999983222222 23333333332222 3899999999976431111111 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ +.|+..+.++.+++..+...+.
T Consensus 140 ~~~~~------e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLIFM------ETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33332 4677778899999988877653
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.76 E-value=8.4e-17 Score=129.70 Aligned_cols=159 Identities=14% Similarity=0.029 Sum_probs=98.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE--EEee-eCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
....+|+++|.+|||||||++.++...+.... ..|...... .... .....+.+|||||... +
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~ 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----CCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence 56689999999999999999998755532211 122221111 1111 1234689999999543 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
......++.++|++|+|+|++.+.+... ..++..+.... .+ .|++||+||+|.... ....+. + .+
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~~--~v~~~~--------~-~~ 141 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN--IPIVLCGNKVDVKNR--QVKAKQ--------V-TF 141 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEEchhhhhc--cCCHHH--------H-HH
Confidence 2333345788899999999995433333 24444455443 22 499999999996533 111111 1 22
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
....+..|+ ++||+.+.++.+++.+|...+..
T Consensus 142 ~~~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 142 HRKKNLQYY------EISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred HHhcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence 233333343 56888899999999999877654
No 50
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=3.4e-17 Score=145.43 Aligned_cols=158 Identities=19% Similarity=0.180 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+|+|.+|||||||+|+|++........ ..+.|....... ..+.+..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~-~~~~t~d~~~~~-~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD-TPGVTRDRIYGE-AEWLGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCCcccceEEE-EEECCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 579999999999999999999876422221 233444443333 34778899999999998621 2233444444445
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
++..+|++++|+|+..+++..+.....+++.. + .|+++|+||+|..... ... .++. ..+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~~-~~~------------~~~~-~lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDEE-ADA------------YEFY-SLGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccch-hhH------------HHHH-hcCC-
Confidence 56788999999999877888887777777764 3 3999999999954320 111 1111 1121
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
......|+..+.++.+|++.|..
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 11234577788888888888876
No 51
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=5.6e-17 Score=124.63 Aligned_cols=155 Identities=18% Similarity=0.080 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-EeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT-TVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|.+|||||||++.+++....+... .+....... ....++ ..+.+|||||.. .+...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~ 65 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL----STYALTLYKHNAKFEGKTILVDFWDTAGQE-----------RFQTM 65 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC----CceeeEEEEEEEEECCEEEEEEEEeCCCch-----------hhhhh
Confidence 479999999999999999998765422211 121111111 111233 357899999943 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++.+.+..+ ..++..+..... ..|+++|+||+|.... .... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~p~ivv~nK~Dl~~~----~~~~--------~~~~~~~ 130 (161)
T cd04124 66 HASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP---EIPCIVVANKIDLDPS----VTQK--------KFNFAEK 130 (161)
T ss_pred hHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEECccCchh----HHHH--------HHHHHHH
Confidence 4445778899999999984433333 344455544322 2499999999996422 1111 1222222
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.++++.+.+.+..
T Consensus 131 ~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 131 HNLPLY------YVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 233332 45788889999999998876543
No 52
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.75 E-value=4.7e-17 Score=125.74 Aligned_cols=158 Identities=16% Similarity=0.134 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.|+++|++|+|||||+|+|++..+... ...+.|........... .+..+.+|||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 599999999999999999997664222 22233433333333321 367899999999542 222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh----
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ---- 174 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~---- 174 (277)
..+..+|++++|+|++..........+..+.. .+ .|+++|+||+|.... ........ +..+..
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~---~~~~~~~~-----~~~~~~~~~~ 135 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNA---NPERVKNE-----LSELGLQGED 135 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccc---cHHHHHHH-----HHHhhccccc
Confidence 34467899999999985544444555555543 23 389999999997643 11111111 111111
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+..+ ...+.|+..+.++.+|++.|....
T Consensus 136 ~~~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 136 EWGGDV----QIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred cccCcC----cEEEeecccCCCHHHHHHHHHHhh
Confidence 111111 223567778889999999987764
No 53
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.75 E-value=4.9e-17 Score=125.32 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=98.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (277)
|+++|++|||||||++.+++..+.... .+|........ ...+..+.+|||||... +......++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i-~~~~~~l~i~Dt~G~~~-----------~~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAI-PTQDAIMELLEIGGSQN-----------LRKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEE-eeCCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence 789999999999999999976542221 12221112222 24567899999999543 222233456
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEE
Q 023779 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (277)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 181 (277)
+++|++++|+|.+.+.+... ...++..........|+++|+||.|.... ..+.++... . .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~--~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-~--~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPL--ARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKE-L--ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHHH--HHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHH-h--CChhhcCCCceEEE
Confidence 78899999999984332222 12233333221223599999999997654 334332211 0 02333333344455
Q ss_pred EEeCCCcccccChhHHHHHHHHHHH
Q 023779 182 LFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 182 ~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.......+|+..+.++.++++.+.+
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHhc
Confidence 4556677888889999999887643
No 54
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.75 E-value=5.3e-17 Score=132.54 Aligned_cols=129 Identities=21% Similarity=0.238 Sum_probs=90.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKE 92 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~ 92 (277)
+-....++|+|.|.+|||||||++.|++..+ ...+.+.|+.....++...++..+.+|||||+.|-.... ..+..+
T Consensus 163 ~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp---EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~q 239 (346)
T COG1084 163 AIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP---EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQ 239 (346)
T ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHhcCCC---ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHH
Confidence 3334558999999999999999999998775 233344455443443444778899999999999854322 122222
Q ss_pred HHHHHhhcCCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
-..++. .-.++++|++|.+ .+++.++ ...++.++..|.. |+++|+||.|....
T Consensus 240 Ai~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~----p~v~V~nK~D~~~~ 295 (346)
T COG1084 240 AILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKA----PIVVVINKIDIADE 295 (346)
T ss_pred HHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCC----CeEEEEecccccch
Confidence 222222 2348999999998 5666665 5777888888874 89999999997755
No 55
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=3.5e-17 Score=127.27 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=93.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.+.....+|+++|++|||||||+++|++..... ..+|......... +++..+.+|||||... +
T Consensus 9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~-----~~~t~g~~~~~~~-~~~~~l~l~D~~G~~~-----------~ 71 (173)
T cd04154 9 KLKEREMRILILGLDNAGKTTILKKLLGEDIDT-----ISPTLGFQIKTLE-YEGYKLNIWDVGGQKT-----------L 71 (173)
T ss_pred hcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-----cCCccccceEEEE-ECCEEEEEEECCCCHH-----------H
Confidence 344556899999999999999999999874321 1122222222222 4567899999999432 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
......++.++|++++|+|++.+.+..+ ...++...+.. ....|++||+||+|.... ...++ +..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~ 138 (173)
T cd04154 72 RPYWRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGA--LSEEE---------IRE 138 (173)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHH---------HHH
Confidence 2233345678899999999984322222 11222222211 122499999999997654 22222 122
Q ss_pred HHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 172 ILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 172 ~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
++... ...+. ..+.|++.+.+++++++++.
T Consensus 139 ~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 139 ALELDKISSHHWR----IQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred HhCccccCCCceE----EEeccCCCCcCHHHHHHHHh
Confidence 22111 11111 22568888999999998864
No 56
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=1.7e-16 Score=148.20 Aligned_cols=175 Identities=19% Similarity=0.190 Sum_probs=109.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..++|+++|++|||||||+|+|++...... .....|+.........+++..+.+|||||+........ ..+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v--~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~--~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVV--NDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT--GAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccc--CCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch--hHHHHHHH
Confidence 348999999999999999999998764211 12222332222223346788899999999864322211 11222221
Q ss_pred --hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 --GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 --~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
..++..+|++++|+|++.+.+..+..++..+... + .|++||+||||.... .....+... +...+..
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-~----~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~~ 592 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-G----RALVLVFNKWDLMDE--FRRQRLERL-----WKTEFDR 592 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEEchhcCCh--hHHHHHHHH-----HHHhccC
Confidence 2345788999999999978888777766655442 2 399999999998654 222211111 1111111
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~ 213 (277)
.. +......||+.+.++.+|++.+.........
T Consensus 593 ~~-----~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 593 VT-----WARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 11 1112345889999999999999998876443
No 57
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.75 E-value=5.6e-17 Score=125.75 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+|+++|++|||||||++.+++..+.... .+|...... ......+ ..+.+|||||.. ++....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNY----KATIGVDFEMERFEILGVPFSLQLWDTAGQE-----------RFKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEECCEEEEEEEEeCCChH-----------HHHhhH
Confidence 6899999999999999999987642221 222222211 1111233 458899999943 233344
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+++++|++++|+|++.+-+... ..++..+.....+ ...|+++|.||.|.... ..+...... ...+....
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~--~~~~~~~~~-----~~~~~~~~ 138 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP--AQYALMEQD-----AIKLAAEM 138 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc--ccccccHHH-----HHHHHHHc
Confidence 455788999999999983222221 2333333322211 12378999999996543 111100000 22333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ..|++.+.++.++++.+..+..+
T Consensus 139 ~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 139 QAEYW------SVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred CCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 43433 45888889999999999888754
No 58
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=5.4e-17 Score=124.64 Aligned_cols=156 Identities=21% Similarity=0.167 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||++.|++........ ...+......... .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~l~D~~G~~-----------~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIR-VGGKRVKLQIWDTAGQE-----------RFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEE-ECCEEEEEEEEECcchH-----------HHHHhH
Confidence 379999999999999999999776522221 1111111111111 233 457899999943 222233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..+|++++|+|++.+.+... ..++..+......+ .|+++|+||+|..........+ ...+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQREVTFLE---------ASRFAQEN 135 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhccCCHHH---------HHHHHHHc
Confidence 344578899999999984333322 23444444443333 3999999999976431011111 22333344
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+..++ ..|++.+.++.++++.+.+
T Consensus 136 ~~~~~------~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 136 GLLFL------ETSALTGENVEEAFLKCAR 159 (161)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHH
Confidence 43333 4577778899999988765
No 59
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.75 E-value=2.4e-17 Score=127.35 Aligned_cols=161 Identities=14% Similarity=0.041 Sum_probs=91.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|++|+|||||+|.|++......+.. ...+|........ .+++..+.+|||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI-EVGNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE-EECCEEEEEEECCCChh-----------hHHHHH
Confidence 489999999999999999986543211111 1123333333322 35678899999999653 222333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+.++|++++|+|++..-+. .....++...... ....|+++++||+|.... ....+.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 446788999999998732111 1122233332221 112499999999997544 322222111 11111111
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
+.... .....|++.+.++++++++|.
T Consensus 140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 11110 122568888999999998874
No 60
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.75 E-value=1e-16 Score=136.07 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
-.|+|||.+|||||||+|+|++.... .... ..+|......... +.+ ..+.|+||||+.........+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y-~fTT~~p~ig~v~-~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADY-PFTTLVPNLGVVR-VDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCC-CCCccCCEEEEEE-eCCceEEEEEeCCCcccCCcccccHHHHHHHHH-
Confidence 36899999999999999999976531 1111 1223333333233 444 78999999999754433333445555544
Q ss_pred hcCCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 99 MAKDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
..++++++|+|++.. -...+ ..+.+.+......-..+|++||+||+|.... ..+....+ .+.+
T Consensus 234 ---erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~--------~l~~ 300 (329)
T TIGR02729 234 ---ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLK--------ELKK 300 (329)
T ss_pred ---HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHH--------HHHH
Confidence 345999999999832 11122 2333344433211123599999999998654 33333222 2223
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+..++ ..|+..+.++++|++.|...+
T Consensus 301 ~~~~~vi------~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 301 ALGKPVF------PISALTGEGLDELLYALAELL 328 (329)
T ss_pred HcCCcEE------EEEccCCcCHHHHHHHHHHHh
Confidence 3332332 457788899999999988765
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.75 E-value=8.1e-17 Score=124.26 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|++|||||||++++++..+.....+..+.+. ...... ......+.+|||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcc-----------hHHHHH
Confidence 6899999999999999999998765322222111111 111111 122345889999996542 112223
Q ss_pred cCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
++..+|++++|+|++.+-+... ..++..+....+.. ...|+++|+||+|.... ..+.... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~-------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNE-------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHH-------HHHHHHHhC
Confidence 4567899999999984443333 44556666654322 23499999999997643 1111110 111222222
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..+ .++||+.+.++.++++.|.++
T Consensus 140 ~~~------~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAF------METSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcE------EEeecCCCCCHHHHHHHHHhc
Confidence 223 256888899999999988654
No 62
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.75 E-value=5.2e-17 Score=139.04 Aligned_cols=162 Identities=22% Similarity=0.163 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|.+|+|||||+|+|++....... ..+.|...........++..+.||||||+.... ...+.+.+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~--~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l--~~~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAAD--QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL--PHELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeecc--CCccccCCEEEEEEeCCCceEEEEecCcccccC--CHHHHHHHHHHH
Confidence 3478999999999999999999997743222 123333333333333356789999999984321 122223343333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
. .+..+|++++|+|++.+.+.... .+..++... +. ...|+++|+||+|.... ..+.. +...
T Consensus 264 e-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~~------------~~~~- 325 (351)
T TIGR03156 264 E-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIER------------LEEG- 325 (351)
T ss_pred H-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHHH------------HHhC-
Confidence 2 35678999999999854444332 333445543 21 12499999999997643 22211 1010
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
... ....|++.+.|+++|++.|...
T Consensus 326 ~~~------~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPE------AVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCC------EEEEEccCCCCHHHHHHHHHhh
Confidence 111 2356888899999999988654
No 63
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.75 E-value=6.9e-17 Score=123.97 Aligned_cols=157 Identities=16% Similarity=0.153 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||+|++++..+.... ....+......... .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~-----------~~~~~~ 66 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQY--QATIGIDFLSKTMY-LEDKTVRLQLWDTAGQE-----------RFRSLI 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccC--CCceeeeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHHHH
Confidence 37999999999999999999987753321 12222222222222 334 358899999933 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..+|++++|+|++.+-+..+ ..++..+....+. ..|+++++||+|.........+. ...+....
T Consensus 67 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~ 135 (161)
T cd01861 67 PSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDKRQVSTEE---------GEKKAKEL 135 (161)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhccccCccCHHH---------HHHHHHHh
Confidence 445678899999999984322222 2344444333332 24999999999975331111111 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+..++ ..|+..+.++.++++.|.+.
T Consensus 136 ~~~~~------~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 136 NAMFI------ETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHh
Confidence 33333 35777888999999988764
No 64
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=1.2e-16 Score=126.75 Aligned_cols=171 Identities=20% Similarity=0.189 Sum_probs=104.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|+|||||+|+|+|...+..+....+ .|.....+.. .....+.+|||||+.+.....+ ++...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH--PKFPNVTLWDLPGIGSTAFPPD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec--CCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence 6799999999999999999999665443332222 1222221211 1234689999999986543222 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc-------cHHHHhcccCCchH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-------TLEDFLGHECPKPL 169 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~-------~l~~~l~~~~~~~~ 169 (277)
..+.+.|+++++.+ .+++..+..+++++... +. |+++|+||+|....... ..+.++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~~----~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-GK----KFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-CC----CEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 13567799888854 37888888888888875 43 89999999998643110 12333333 11123
Q ss_pred HHHHhhcC---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 170 KEILQLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 170 ~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+...+ ..++..+.... .+.++..|.+.+...++.
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhH
Confidence 33333322 35555444321 346788888888887775
No 65
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.75 E-value=7.8e-17 Score=129.69 Aligned_cols=163 Identities=20% Similarity=0.143 Sum_probs=98.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++..+.... ....+...........+ ...+.||||||.. ......
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~--~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~-----------~~~~l~ 67 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSY--KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQS-----------IGGKML 67 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCceeEEEEEEEEEeCCCCEEEEEEEECCCcH-----------HHHHHH
Confidence 47999999999999999999976642211 11112222122222112 3468899999932 223334
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
..++.++|++++|+|++..-+... ..++..+...... ....|+++|+||+|.... ..+... . ...+...
T Consensus 68 ~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~--~-----~~~~~~~ 138 (215)
T cd04109 68 DKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDD--K-----HARFAQA 138 (215)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHH--H-----HHHHHHH
Confidence 445678999999999984333222 3455556555432 112378999999997533 111100 1 2334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..||+.+.++.++++.+...+..
T Consensus 139 ~~~~~~------~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 139 NGMESC------LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred cCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 343333 35888899999999999887654
No 66
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.75 E-value=9.1e-17 Score=124.02 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++..+... ...+.+......... ..+ ..+.+|||||.. .+....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-----------~~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQE-----------RFRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------hHHHHH
Confidence 6899999999999999999997664221 112222222222222 333 357899999943 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++.+|++++|+|++++-+... ..++..+....... .|+++|.||+|.........++ ...+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSE---------AQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHH---------HHHHHHHc
Confidence 445678899999999983222222 23333343332122 4899999999975441111111 22333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ +.|++.+.++.+++..|.+.+.
T Consensus 138 ~~~~~------~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFL------ETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEE------EEECCCCcCHHHHHHHHHHHHH
Confidence 43433 4677788899999999877653
No 67
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.75 E-value=1e-16 Score=123.36 Aligned_cols=159 Identities=20% Similarity=0.188 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||++++++....... ....+......... ..+ ..+.+|||||.. .+....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~-----------~~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQY--KSTIGVDFKTKTIE-VDGKRVKLQIWDTAGQE-----------RFRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCceeeEEEEEEEE-ECCEEEEEEEEECCChH-----------HHHHHH
Confidence 47999999999999999999987652221 11222222222222 344 358899999932 222333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..+|++++|+|+...-+... ..++..+....... .|+++|+||+|.........+ . ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~~~~~~-~--------~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQRQVSRE-E--------AEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccccCCCHH-H--------HHHHHHHc
Confidence 444577899999999983323222 22333333332222 499999999997643101111 1 22344444
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ +.|+..+.++.++++.|.+.+.
T Consensus 136 ~~~~~------e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFF------ETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 54433 4566777899999999987664
No 68
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=1.1e-16 Score=123.06 Aligned_cols=158 Identities=21% Similarity=0.169 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||+|++++...........+.+ ....... .++ ..+.+|||||.. .+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~-~~~~~~~~~i~D~~G~~-----------~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVN-LDDTTVKFEIWDTAGQE-----------RYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEE-ECCEEEEEEEEeCCchH-----------HHHHHH
Confidence 689999999999999999999877533221111111 1111111 233 457899999932 222333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+.++|++++|+|++..-+... ..++..+....... .|++++.||.|........... ...+....
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEE---------AQEYADEN 136 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHH---------HHHHHHHc
Confidence 335677899999999983222222 34445555543332 3899999999966331011111 23334443
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+..+ .+.|++.+.++.++++.+.+.+
T Consensus 137 ~~~~------~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 137 GLLF------FETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CCEE------EEEECCCCCCHHHHHHHHHHHh
Confidence 4333 3567778899999999987654
No 69
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.8e-16 Score=133.66 Aligned_cols=168 Identities=22% Similarity=0.262 Sum_probs=117.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
....+.+.+|+++|+||+|||||+|+|++.+. +.++..+.|++.........+|.++.++||.|+-++...-+.++-+
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHH
Confidence 34456789999999999999999999999886 5566666677666665566899999999999998754433443322
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
++ ......+|.+|||+|++...+..+...+. .. ...+|+++|.||.|.... ......
T Consensus 289 --Rs-~~~i~~ADlvL~v~D~~~~~~~~d~~~~~---~~---~~~~~~i~v~NK~DL~~~--~~~~~~------------ 345 (454)
T COG0486 289 --RA-KKAIEEADLVLFVLDASQPLDKEDLALIE---LL---PKKKPIIVVLNKADLVSK--IELESE------------ 345 (454)
T ss_pred --HH-HHHHHhCCEEEEEEeCCCCCchhhHHHHH---hc---ccCCCEEEEEechhcccc--cccchh------------
Confidence 22 22346779999999999666666766555 11 112389999999998766 221111
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
........ ...|++++.+++.|.+.|...+...
T Consensus 346 -~~~~~~~~-----i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 346 -KLANGDAI-----ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -hccCCCce-----EEEEecCccCHHHHHHHHHHHHhhc
Confidence 00011111 1447788899999999999998764
No 70
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.75 E-value=2.5e-16 Score=122.28 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|..|||||||++.+.+..+.... .+|...........++ ..+.+|||||... +....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARIDNEPALLDILDTAGQAE-----------FTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEECCEEEEEEEEeCCCchh-----------hHHHh
Confidence 68999999999999999999876652221 2222221221122344 3578999999542 33333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++.++|++++|+|++++.+.... .++..+..... ....|+++|+||+|.... ..+.... ...+....
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~a~~~ 137 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ--RQVTTEE-------GRNLAREF 137 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc--CccCHHH-------HHHHHHHh
Confidence 4456788999999999855554443 34444554322 123499999999996543 2221111 22333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ++|++.+.+++++++.+.+.+..
T Consensus 138 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 138 NCPFF------ETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred CCEEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 44433 56888889999999998766543
No 71
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.74 E-value=1.2e-16 Score=127.16 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=96.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|||||||++.+++..+.... ..+........... ..+ ..+.||||||... +...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVE-INGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEE-ECCEEEEEEEEeCCCchh-----------HHHH
Confidence 489999999999999999999976642211 11111122112221 233 3578999999432 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.+++++++|+|++.+-+..+ ..++..+..... ..|++||+||+|.... ..+.. .. ...+...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~--~~~~~--~~-----~~~~~~~ 139 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPER--KVVET--ED-----AYKFAGQ 139 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccc--cccCH--HH-----HHHHHHH
Confidence 3445678899999999984333222 234444444322 2489999999997644 22110 00 2233333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ +.|+..+.++.++++.|...+..
T Consensus 140 ~~~~~~------e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 140 MGISLF------ETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred cCCEEE------EEECCCCcCHHHHHHHHHHHHHH
Confidence 343333 45777889999999999887654
No 72
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.74 E-value=1.8e-16 Score=123.97 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-----------eCCceEEEEeCCCCCCCCCCch
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------KDGQVVNVIDTPGLFDLSAGSE 87 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------~~~~~~~liDtpG~~~~~~~~~ 87 (277)
.++|+++|++|||||||++.+++........+ +............ .....+.+|||||.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~-------- 73 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFIT--TVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQ-------- 73 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCC--ccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCCh--------
Confidence 48999999999999999999987664222111 1111111111111 11246889999992
Q ss_pred HHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779 88 FVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (277)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~ 166 (277)
.++......++.++|++++|+|++..-+... ..++..+..... ....|+++|.||+|.... ..+.. .
T Consensus 74 ---~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~v~~--~---- 141 (180)
T cd04127 74 ---ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ--RQVSE--E---- 141 (180)
T ss_pred ---HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc--CccCH--H----
Confidence 2334444556788999999999984322222 233333333211 112389999999997643 11110 0
Q ss_pred chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
....+....+..++ +.|++.+.+++++++.+.+.+.
T Consensus 142 -~~~~~~~~~~~~~~------e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 142 -QAKALADKYGIPYF------ETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred -HHHHHHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 13334444443333 5688888999999999877553
No 73
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=3.5e-16 Score=139.31 Aligned_cols=166 Identities=19% Similarity=0.236 Sum_probs=112.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|++|+|||||+|+|+|.+..... -.+.|+........ +.++.+.++|.||.++......+ +.+.+-+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgN--wpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~D--E~Var~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGN--WPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSED--EKVARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecC--CCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCch--HHHHHHHH
Confidence 467999999999999999999998853222 23555555544444 78888999999999876643222 22322222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
....+|+++-|+|++ .+...-.-.++.+ + +|. |+++++|++|..++.|-.++ .+++-+..|.
T Consensus 78 -l~~~~D~ivnVvDAt-nLeRnLyltlQLl-E-~g~----p~ilaLNm~D~A~~~Gi~ID----------~~~L~~~LGv 139 (653)
T COG0370 78 -LEGKPDLIVNVVDAT-NLERNLYLTLQLL-E-LGI----PMILALNMIDEAKKRGIRID----------IEKLSKLLGV 139 (653)
T ss_pred -hcCCCCEEEEEcccc-hHHHHHHHHHHHH-H-cCC----CeEEEeccHhhHHhcCCccc----------HHHHHHHhCC
Confidence 146789999999998 4433333333322 2 233 89999999998766333332 3444455677
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~ 213 (277)
+++. .+|.++.|+++++..+....+.+..
T Consensus 140 PVv~------tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 140 PVVP------TVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred CEEE------EEeecCCCHHHHHHHHHHhcccccc
Confidence 7664 5777889999999999988766543
No 74
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.74 E-value=1.2e-16 Score=149.24 Aligned_cols=164 Identities=21% Similarity=0.166 Sum_probs=110.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|+|.+|||||||+|+|++....... ...+.|...... ...+.+..+.+|||||+.... ..+...+....
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~-~~~~~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 348 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSY-DAEWAGTDFKLVDTGGWEADV---EGIDSAIASQA 348 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEE-EEEECCEEEEEEeCCCcCCCC---ccHHHHHHHHH
Confidence 4578999999999999999999987542111 123444444333 334678899999999987422 22344555555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++..+|++|+|+|++.+++..+..+..+++.. + .|+++|+||+|.... ... ...+.. .+
T Consensus 349 ~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-~----~pvIlV~NK~D~~~~--~~~-----------~~~~~~-lg 409 (712)
T PRK09518 349 QIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-G----KPVVLAVNKIDDQAS--EYD-----------AAEFWK-LG 409 (712)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEECcccccc--hhh-----------HHHHHH-cC
Confidence 5566788999999999877888777777777642 2 399999999996533 110 111111 12
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ...+.|+..+.|+.+|++.|...++.
T Consensus 410 ~~-----~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 410 LG-----EPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred CC-----CeEEEECCCCCCchHHHHHHHHhccc
Confidence 11 11245888999999999998877643
No 75
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=2.3e-16 Score=121.65 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=94.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++++++...... .....+......... ..+ ..+.+|||||.. .+....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~-~~~~~~~~~l~D~~g~~-----------~~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQ-IDGKTIKAQIWDTAGQE-----------RYRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEE-ECCEEEEEEEEeCCChH-----------HHHHHH
Confidence 6899999999999999999998764222 112222222222222 334 357899999932 233333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..++++++|+|++...+..+ ..++..+......+ .|+++|+||+|.........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 445678899999999983332222 23344444433222 4999999999975431011111 22333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+..++ +.|++.+.++..+++.+...+
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHHh
Confidence 33333 467788899999999887653
No 76
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.74 E-value=1.2e-16 Score=123.05 Aligned_cols=159 Identities=21% Similarity=0.168 Sum_probs=93.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||++++++....... ..|...........++ ..+.+|||||... +...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEIDGQWAILDILDTAGQEE-----------FSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEECCEEEEEEEEECCCCcc-----------hhHH
Confidence 379999999999999999999976542211 1222211121122444 3578999999653 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++..-+... ..++..+..... ....|++|++||+|.... ..+... . ...+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~--~~~~~~--~-----~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ--RKVSRE--E-----GQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc--ceecHH--H-----HHHHHHH
Confidence 2334567799999999983322222 223333333221 122499999999997544 211110 1 2233333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.+..++ +.|+..+.++.++++.+.+.+
T Consensus 137 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYI------ETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEE------EeeCCCCCCHHHHHHHHHHhh
Confidence 333332 567888899999999887654
No 77
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.74 E-value=6.1e-16 Score=124.91 Aligned_cols=172 Identities=12% Similarity=0.057 Sum_probs=104.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
.+.....+|+++|++|||||||++.+++..+.... .+|....+......++ ..+.||||+|-.
T Consensus 8 ~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y----~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e----------- 72 (232)
T cd04174 8 QPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTAGLETEEQRVELSLWDTSGSP----------- 72 (232)
T ss_pred cCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCc----CCceeeeeEEEEEECCEEEEEEEEeCCCch-----------
Confidence 34455689999999999999999999876542221 2222221211122333 358899999932
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-C
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-C 165 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~ 165 (277)
.+......++.++|++++|+|++.+-+... ..|+..+..... . .|++||+||+|+.... ..+...... . .
T Consensus 73 ~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs 148 (232)
T cd04174 73 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPIS 148 (232)
T ss_pred hhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCC
Confidence 233344456789999999999985444432 345555665432 2 3899999999964321 111100000 0 0
Q ss_pred CchHHHHHhhcCC-eEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779 166 PKPLKEILQLCDN-RCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (277)
Q Consensus 166 ~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~ 210 (277)
....+.+....+. .|+ ++||+.+. ++.+++..+...+..
T Consensus 149 ~~e~~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 149 YEQGCALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred HHHHHHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHHHH
Confidence 0124445555554 233 57888886 799999998776543
No 78
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=3.9e-17 Score=135.76 Aligned_cols=215 Identities=17% Similarity=0.198 Sum_probs=127.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc--cccCCC--------------CCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAF--KASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~--~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
+|+|+|++|+|||||+|+|++.... ..+... .+.+........ .+.+..+.+|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~-~~~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPL-EWKGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEE-EECCEEEEEEECcCHHH---
Confidence 4899999999999999999743211 111110 122222222223 36788899999999653
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
.......+ +..+|++++|+|++.+........+..+... + .|+++++||+|.... .+...+..
T Consensus 77 ----f~~~~~~~----l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~---~~~~~~~~- 139 (268)
T cd04170 77 ----FVGETRAA----LRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA---DFDKTLAA- 139 (268)
T ss_pred ----HHHHHHHH----HHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC---CHHHHHHH-
Confidence 11223333 3456999999999866666555665555432 3 289999999997644 34444433
Q ss_pred CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc-CC-----CCCChHHHHHHHHHHHHHHHHHHHH
Q 023779 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN-GG-----QPYTDELKRGATELRDKKAEVDSLK 238 (277)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (277)
++ ...+.+++.+.-+.. .+.++..+++.+....-.. .+ ...+.++...++++ +.+.++.+.
T Consensus 140 ----l~---~~~~~~~~~~~ip~~----~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~l~e~~a 206 (268)
T cd04170 140 ----LQ---EAFGRPVVPLQLPIG----EGDDFKGVVDLLTEKAYIYSPGAPSEEIEIPEELKEEVAEA--REELLEAVA 206 (268)
T ss_pred ----HH---HHhCCCeEEEEeccc----CCCceeEEEEcccCEEEEccCCCcceeccCCHHHHHHHHHH--HHHHHHHHh
Confidence 33 334555555443322 2234444444432221111 11 12345555555555 556677788
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779 239 EYSKREISKLMGQMQESYEDRIKRMAEMRAG 269 (277)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (277)
+.+++.++++.+..+...++..+.+++.+.+
T Consensus 207 ~~dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 207 ETDDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred hCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 8899999999988777777777777766654
No 79
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.4e-16 Score=126.88 Aligned_cols=160 Identities=14% Similarity=0.059 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+|+++|++|||||||++.+++..+.... .+|.. ....... .+ ...+.+|||||.. .+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~----~~t~~~d~~~~~v~-~~~~~~~~l~l~Dt~G~~-----------~~~ 64 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHY----KATIGVDFALKVIE-WDPNTVVRLQLWDIAGQE-----------RFG 64 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCceeEEEEEEEEE-ECCCCEEEEEEEECCCch-----------hhh
Confidence 47999999999999999999976542221 22222 1112222 23 3457899999953 233
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
.....++.++|++++|+|++.+-+... ..++..+..... .....|++||+||.|.........++ ...
T Consensus 65 ~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~---------~~~ 135 (201)
T cd04107 65 GMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQ---------MDQ 135 (201)
T ss_pred hhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHH---------HHH
Confidence 333445788999999999984333222 223333333211 11234999999999975320011111 333
Q ss_pred HHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+....+ ..++ ++|++.+.++.++++.+.+.+..
T Consensus 136 ~~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 136 FCKENGFIGWF------ETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 444444 2332 56888889999999999887654
No 80
>PLN03110 Rab GTPase; Provisional
Probab=99.74 E-value=2.2e-16 Score=127.04 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=98.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|||||||++.+++........ .+.........+ ..++ ..+.||||||.. .+..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v-~~~~~~~~l~l~Dt~G~~-----------~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTL-QVEGKTVKAQIWDTAGQE-----------RYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEE-EECCEEEEEEEEECCCcH-----------HHHH
Confidence 45899999999999999999999876532211 111122211222 2333 368899999932 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..++++++|+|++..-+... ..++..+......+ .|+++|+||+|.... ..+.... .+.+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~--~~~~~~~-------~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL--RSVAEED-------GQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc--cCCCHHH-------HHHHHH
Confidence 44455678899999999983333222 24445555543333 399999999997543 1111111 222323
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ +.|++.+.+++++++.+...+..
T Consensus 146 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFL------ETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3333333 45778889999999998776644
No 81
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.74 E-value=1.1e-16 Score=126.42 Aligned_cols=160 Identities=18% Similarity=0.185 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|.+|||||||++.+++..+.... .+|...........++. .+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETY----DPTIEDSYRKQVVVDGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchHhhEEEEEEECCEEEEEEEEECCCchh-----------hHHHHH
Confidence 4899999999999999999866542211 11211111111223444 478999999432 222333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++.++|++++|+|++...+... ..++..+...... ....|++||+||+|.... ..+.... ...+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~-------~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEE-------GAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHH-------HHHHHHHh
Confidence 45678899999999984333222 3444445443321 123499999999997543 1111100 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ +.||+.+.++.+++..+.+.+..
T Consensus 137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFI------EASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 44333 56888889999999999887654
No 82
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.74 E-value=7.3e-17 Score=125.02 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=95.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|.+|||||||++++++... .. ..+|........ .+.+..+.+|||||... +......+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~-~~~~~~i~l~Dt~G~~~-----------~~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETV-EYKNLKFTIWDVGGKHK-----------LRPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEE-EECCEEEEEEECCCChh-----------cchHHHHH
Confidence 589999999999999999997643 11 122333323222 35677899999999643 22233334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh-cC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL-CD 177 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~ 177 (277)
+.++|++++|+|++.+-+..+ ...++....... ...|++||+||+|.... ...++.... ..+... ++
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~------~~~~~~~~~ 133 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSE--AHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEMTEL------LSLHKLCCG 133 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHHHHH------hCCccccCC
Confidence 577899999999983322222 223333332211 12489999999997543 233322211 001011 11
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+.. .++|++.+.|+.+++++|.+.+..
T Consensus 134 ~~~~~----~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 134 RSWYI----QGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred CcEEE----EeCcCCCCCCHHHHHHHHHHHHhh
Confidence 12222 256888999999999999877655
No 83
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.74 E-value=7.3e-16 Score=135.70 Aligned_cols=123 Identities=17% Similarity=0.216 Sum_probs=78.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
+...+|+++|++|+|||||+|+|++........ ..+.|...... ...+++..+.+|||||+.+... .+...-...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~-~pgtTrd~~~~-~i~~~g~~v~l~DTaG~~~~~~---~ie~~gi~~ 275 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSD-IKGTTRDVVEG-DFELNGILIKLLDTAGIREHAD---FVERLGIEK 275 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcEEEEEEE-EEEECCEEEEEeeCCCcccchh---HHHHHHHHH
Confidence 355899999999999999999999875311211 12333333333 3346788899999999875321 111111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
...++..+|++++|+|++.+.+..+. ++..+.. .+ .|+++|+||+|..
T Consensus 276 ~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~ 323 (442)
T TIGR00450 276 SFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLK 323 (442)
T ss_pred HHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCC
Confidence 22345788999999999866655443 3333321 12 3899999999974
No 84
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.73 E-value=7.6e-17 Score=124.74 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|++|||||||++.+...... .. .+|........ ......+.+|||||.. .+.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~----~~t~g~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETV-TYKNVKFNVWDVGGQD-----------KIRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cc----cCCcccceEEE-EECCEEEEEEECCCCH-----------HHHHHHH
Confidence 489999999999999999999865432 11 11222222222 2456779999999953 2333334
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh--
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-- 174 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-- 174 (277)
.++.++|++++|+|++...+..+ ...++.+..... ...|++||+||+|.... ...++. ...+.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~~ 138 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEI---------QEKLGLT 138 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHH---------HHHcCCC
Confidence 46778999999999984322222 223333332211 12499999999997543 222221 11111
Q ss_pred hc-CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 175 ~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.. ...+.. .++||+.+.|+.+++++|.+
T Consensus 139 ~~~~~~~~~----~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 139 RIRDRNWYV----QPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ccCCCcEEE----EEeeCCCCCChHHHHHHHhc
Confidence 00 111222 25688899999999998753
No 85
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=1.5e-16 Score=122.01 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||+|++++..+.... .+|...........++. .+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEECCEEEEEEEEECCCCcc-----------hHHHH
Confidence 58999999999999999999976642221 11211111111223443 477899999542 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|++++.+-+..+ ..++..+..... ....|++||+||+|.... ...... ...+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~--~~~~~~--------~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR--TVSSRQ--------GQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--eecHHH--------HHHHHHHh
Confidence 334567899999999983322222 223334443321 122499999999997643 111111 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+..++ +.|++.+.|++++++.+.+.+
T Consensus 136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 136 GIPYI------ETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHh
Confidence 43333 457888899999999886543
No 86
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.73 E-value=8.3e-16 Score=143.19 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~ 96 (277)
..+|+++|++|||||||+|+|+|.... .+.. .+.|+...... ..+++..+.+|||||.++..... ....+.+...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~-pGvTve~k~g~-~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VGNW-AGVTVERKEGQ-FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cCCC-CCceEeeEEEE-EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 478999999999999999999997652 2222 34454443333 34677889999999998754321 1222232222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
. .....+|++++|+|++ .... ...+...+.+. + .|+++++||+|..+. ..+... .+.+-+..
T Consensus 80 ~-l~~~~aD~vI~VvDat-~ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~id--------~~~L~~~L 141 (772)
T PRK09554 80 Y-ILSGDADLLINVVDAS-NLER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRID--------IDALSARL 141 (772)
T ss_pred H-HhccCCCEEEEEecCC-cchh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHHH--------HHHHHHHh
Confidence 1 1235789999999998 4332 22333344432 3 399999999997644 222221 33344445
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC--CCCCChHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG--GQPYTDELKRGAT 225 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~--~~~~~~~~~~~~~ 225 (277)
+.+++ +.|+..+.+++++.+.+........ ...|++++.+..+
T Consensus 142 G~pVv------piSA~~g~GIdeL~~~I~~~~~~~~~~~~~yp~~le~~I~ 186 (772)
T PRK09554 142 GCPVI------PLVSTRGRGIEALKLAIDRHQANENVELVHYPQPLLNEAD 186 (772)
T ss_pred CCCEE------EEEeecCCCHHHHHHHHHHhhhccCCcccCCCHHHHHHHH
Confidence 65544 3566677899999999988764221 1225555444333
No 87
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.73 E-value=1.3e-16 Score=122.79 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|++|||||||+|++++........ .... ....... ..++ ..+.+|||||.... .....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~t~~-~~~~~~~-~~~~~~~~l~i~Dt~g~~~~-----------~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--PTIE-DSYRKQI-EIDGEVCLLDILDTAGQEEF-----------SAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccC--Cchh-hhEEEEE-EECCEEEEEEEEECCCcccc-----------hHHHH
Confidence 79999999999999999999766422211 1111 1111112 2333 45779999996542 11222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.++..+|++++|+|+..+-+... ..+...+...... ...|+++|+||+|.... ..+... . ...+....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~--~~~~~~--~-----~~~~~~~~~ 136 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE--RVVSTE--E-----GKELARQWG 136 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc--ceEcHH--H-----HHHHHHHcC
Confidence 23456799999999984322222 2233334333221 12499999999997643 111110 0 223334434
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..++ +.|++.+.++.++++.+.+.+.
T Consensus 137 ~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 CPFL------ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence 3333 5678888999999999877654
No 88
>PRK04213 GTP-binding protein; Provisional
Probab=99.73 E-value=3.3e-16 Score=124.79 Aligned_cols=168 Identities=19% Similarity=0.188 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH-
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC- 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~- 96 (277)
...+|+++|++|+|||||+|+|++... ..+.. .+.|..... .. +. .+.+|||||++............+...
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~-~~~~~-~~~t~~~~~--~~-~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKV-RVGKR-PGVTRKPNH--YD-WG--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CceeeCceE--Ee-ec--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 347899999999999999999998764 22221 233332221 11 22 689999999865443332222333332
Q ss_pred ---HhhcCCCccEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 97 ---LGMAKDGIHAFLVVFSVTNRFS-----------QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 97 ---~~~~~~~~~~~l~v~d~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
+......++++++|+|...... ..+...+..+.. . + .|+++|+||+|.... . .+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~--~--~p~iiv~NK~Dl~~~--~--~~~~- 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-L--G--IPPIVAVNKMDKIKN--R--DEVL- 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH-c--C--CCeEEEEECccccCc--H--HHHH-
Confidence 2223345689999999862111 122333444432 1 2 389999999997654 2 1111
Q ss_pred ccCCchHHHHHhhcCC--eEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 163 HECPKPLKEILQLCDN--RCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.++....+. .+... ......||+.+ +++++++.|...+..
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 122222221 11000 11236788999 999999999887755
No 89
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=1.7e-16 Score=122.00 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++++++..+.... .+|...........++ ..+.+|||||... +....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ-----------FTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEECCEEEEEEEEECCCccc-----------cchHH
Confidence 68999999999999999999976542221 1222111111122344 3467899999543 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+++++|++++|+|++..-+..+ ..++..+..... ....|+++|+||+|.... ..+.. .. ...+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~--~~~~~--~~-----~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLEDE--RVVSR--EE-----GQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--ceecH--HH-----HHHHHHHc
Confidence 334678899999999984332222 233444444322 123499999999997543 11111 00 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+..++ +.|++.+.++.++++.+.+.
T Consensus 137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFY------ETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHh
Confidence 33333 56778889999999988764
No 90
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.73 E-value=2.6e-16 Score=121.17 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCccee--eEEEEEe--eeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKT--CEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~--~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
++|+++|++|||||||++++.+. ..+... ..+|.. ....... ......+.+|||||.. .+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE-----------LYS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH-----------HHH
Confidence 47999999999999999999853 122211 122221 1111111 1233568999999932 233
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
......+..+|++++|+|++...+... ..++..+.... ...|+++|+||+|.... ..+.... .+.+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~-------~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDAQ-------AQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHHH-------HHHHH
Confidence 333445678899999999984322222 23334444332 22499999999997544 2111111 11222
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
...+..++ ..|+..+.++.++++.+.+.+
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHHh
Confidence 22232332 457788899999999887653
No 91
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=2.6e-16 Score=124.02 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=95.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++..+..... .+........... .++ ..+.+|||||.. .+....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~g~~-----------~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVY-IENKIIKLQIWDTNGQE-----------RFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHhhH
Confidence 479999999999999999999776522111 1111222222222 333 347899999943 222233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+.++|++++|+|++.+-+... ..++..+....+.. .|+++|+||.|.... ..+.... ...+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~--~~v~~~~-------~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN--KVVDSNI-------AKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc--ccCCHHH-------HHHHHHHc
Confidence 445678899999999984332222 23334444433322 489999999997644 2221111 12232333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ..|++.+.++++++..+.+.+..
T Consensus 136 ~~~~~------evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFF------ETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 33333 45777788999999888776654
No 92
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=2.7e-16 Score=121.44 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|.+|||||||+|++++..+... .... ................+.+|||||.... ...+...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~~ 67 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VPRV--LPEITIPADVTPERVPTTIVDTSSRPQD-----------RANLAAE 67 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CCCc--ccceEeeeeecCCeEEEEEEeCCCchhh-----------hHHHhhh
Confidence 799999999999999999997665322 1111 1111111111123456889999996531 1122223
Q ss_pred CCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc-cHHHHhcccCCchHHHHHhhcC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK-TLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
+..+|++++|+|++.+.+... ..++..+..... . .|+++|+||+|....... .++.. +..+.....
T Consensus 68 ~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~~~ 136 (166)
T cd01893 68 IRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNEFR 136 (166)
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHH--------HHHHHHHHh
Confidence 467899999999984433333 234455555432 2 499999999997654100 11121 222222221
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.. .....+|+..+.+++++++.+...+
T Consensus 137 ~~----~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 137 EI----ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred cc----cEEEEeccccccCHHHHHHHHHHHh
Confidence 10 1122668888899999999988765
No 93
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.1e-16 Score=131.16 Aligned_cols=153 Identities=21% Similarity=0.274 Sum_probs=99.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEE-eeeCC--ceEEEEeCCCCCCCCCCch---
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTT-VLKDG--QVVNVIDTPGLFDLSAGSE--- 87 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~-~~~~~--~~~~liDtpG~~~~~~~~~--- 87 (277)
.+|+++|++|+|||||+|+|++......... ....|+....... ...++ ..++|||||||++......
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~ 84 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWK 84 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHH
Confidence 7899999999999999999998876544321 1233333322221 12344 3589999999998654221
Q ss_pred HHH----HHHHHHHh--------hc--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 88 FVG----KEIVKCLG--------MA--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 88 ~~~----~~~~~~~~--------~~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
.+. +++..++. .. ...+|+++|+++.+ .++...+...++.+.. . .|+++|+||+|....
T Consensus 85 ~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l~~ 158 (276)
T cd01850 85 PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcCCH
Confidence 111 12222221 11 23589999999987 4677777777777654 2 389999999998766
Q ss_pred ccccHHHHhcccCCchHHHHHhhcCCeEEEEeC
Q 023779 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (277)
Q Consensus 153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (277)
..+..+... +.+.+...+.+++.|..
T Consensus 159 --~e~~~~k~~-----i~~~l~~~~i~~~~~~~ 184 (276)
T cd01850 159 --EELKEFKQR-----IMEDIEEHNIKIYKFPE 184 (276)
T ss_pred --HHHHHHHHH-----HHHHHHHcCCceECCCC
Confidence 556555555 77777877777776554
No 94
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.73 E-value=1.9e-16 Score=121.09 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=94.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCC
Q 023779 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (277)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (277)
|+|++|+|||||+|+|++..... +. ..+.|......... +++..+.+|||||+.+....... ..+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~-~~-~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~--~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKV-GN-WPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYSED--EKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccc-cC-CCCcccccceEEEe-eCCeEEEEEECCCccccCCCChh--HHHHHHHhcC-CC
Confidence 58999999999999999876322 21 22334444333333 56778999999998765432211 1222222222 58
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE
Q 023779 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (277)
Q Consensus 104 ~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (277)
+|++++|+|+. .... ...++..+.. .+ .|+++|+||+|.... ..+... ...+....+..++
T Consensus 75 ~d~vi~v~d~~-~~~~-~~~~~~~~~~-~~----~~~iiv~NK~Dl~~~--~~~~~~--------~~~~~~~~~~~~~-- 135 (158)
T cd01879 75 PDLIVNVVDAT-NLER-NLYLTLQLLE-LG----LPVVVALNMIDEAEK--RGIKID--------LDKLSELLGVPVV-- 135 (158)
T ss_pred CcEEEEEeeCC-cchh-HHHHHHHHHH-cC----CCEEEEEehhhhccc--ccchhh--------HHHHHHhhCCCeE--
Confidence 89999999998 3322 2233333332 22 399999999998654 222211 2223233333333
Q ss_pred eCCCcccccChhHHHHHHHHHHHHH
Q 023779 184 DNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 184 ~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..|+..+.++..+++.+..+.
T Consensus 136 ----~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 136 ----PTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ----EEEccCCCCHHHHHHHHHHHh
Confidence 457777788999998887764
No 95
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.72 E-value=2.9e-16 Score=123.85 Aligned_cols=136 Identities=18% Similarity=0.232 Sum_probs=89.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
..+|+++|+.++|||||+++|++...... .....+.|......... +++..+.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~---- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHA---- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHH----
Confidence 37899999999999999999985311000 00123445444444333 567789999999954
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH-Hhcc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGH 163 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~-~l~~ 163 (277)
.+...+..+...+|++++|+|+..+....+...+..+... +.. ++++++||+|.... ....+ ..+.
T Consensus 77 -------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~~---~iIvviNK~D~~~~--~~~~~~~~~~ 143 (195)
T cd01884 77 -------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GVP---YIVVFLNKADMVDD--EELLELVEME 143 (195)
T ss_pred -------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---cEEEEEeCCCCCCc--HHHHHHHHHH
Confidence 2333334445678999999999877777777777777663 431 47899999998644 33323 3333
Q ss_pred cCCchHHHHHhhcC
Q 023779 164 ECPKPLKEILQLCD 177 (277)
Q Consensus 164 ~~~~~~~~~~~~~~ 177 (277)
+..++...+
T Consensus 144 -----i~~~l~~~g 152 (195)
T cd01884 144 -----VRELLSKYG 152 (195)
T ss_pred -----HHHHHHHhc
Confidence 666666554
No 96
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=2e-16 Score=121.87 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|.+|||||||+++++....... ..+|...........++ ..+.+|||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence 6899999999999999999985543111 11222211111122343 3467999999542 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++.++|++++|+|++..-+..+ ..++..+..... ....|++||+||+|........... ...+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHHH---------HHHHHHHh
Confidence 335677899999999873322222 233343433221 1224999999999976431111111 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+..++ +.|++.+.++.+++..+.+.+
T Consensus 137 ~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 43333 567888899999999987655
No 97
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.72 E-value=3.6e-16 Score=119.87 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||+|++++..+.... ....+......... ..+ ..+.+|||||.. .+....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~-----------~~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVN-IGGKRIDLAIWDTAGQE-----------RYHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEE-ECCEEEEEEEEECCchH-----------HHHHhh
Confidence 37999999999999999999977653221 11111111111122 223 358899999932 122222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..+|++++|+|++++-+... ..++..+...... ..|+++|+||+|.... ..+.. . ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~--~~~~~--~-----~~~~~~~~~ 135 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ--RVVSK--S-----EAEEYAKSV 135 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCH--H-----HHHHHHHHc
Confidence 334567899999999984332222 2333444444332 2499999999997643 11110 0 122333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+..++ ..|+..+.++.++++.+.+.+
T Consensus 136 ~~~~~------~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 136 GAKHF------ETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHh
Confidence 44433 456777889999999987653
No 98
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.72 E-value=1.9e-16 Score=123.39 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=93.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|.+|||||||++.+...... . ..+|......... .....+.+|||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~----~~~t~~~~~~~~~-~~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-T----TIPTIGFNVETVT-YKNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccccceEEEE-ECCEEEEEEECCCChh-----------hHHHHH
Confidence 489999999999999999999644331 1 1123322222222 4667899999999542 333344
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++.++|++++|+|++.+.+..+ ..+++....... ...|++||+||.|.... ...+++... +. + ...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~-~-~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDE--AREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG-L-HSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC-c-ccc
Confidence 45788999999999983322221 223333332211 12489999999997543 222222211 00 0 011
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+... ..+.|++.+.++.+++++|...+
T Consensus 145 ~~~~~~---~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWY---IQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEE---EEEeeCCCCCCHHHHHHHHHHHh
Confidence 112111 11468888999999999987654
No 99
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=3e-16 Score=123.14 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=92.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|||||||++++++...... ....+ ......... ...+..+.+|||||.. .+...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~--~~~~~~~~~~~~~~~~~l~l~Dt~G~~-----------~~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKG--FNTEKIKVSLGNSKGITFHFWDVGGQE-----------KLRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccc--cceeEEEeeccCCCceEEEEEECCCcH-----------hHHHH
Confidence 47899999999999999999987654221 11111 111111111 1234679999999943 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++..-+..+ ..++..+..... ....|++||+||+|.... ...++. .. +..+...
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~--~~~~~~-~~-----~~~~~~~ 139 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNA--LSVSEV-EK-----LLALHEL 139 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcccc--CCHHHH-HH-----HhCcccc
Confidence 3445678899999999983211111 122222222211 123499999999997543 222221 11 1000001
Q ss_pred cCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
... .+.. .+.|++.+.|++++++.|.+.+.
T Consensus 140 ~~~~~~~~----~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 140 SASTPWHV----QPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred CCCCceEE----EEeecccCCCHHHHHHHHHHHHH
Confidence 111 1111 25688889999999999877663
No 100
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=4e-16 Score=135.82 Aligned_cols=166 Identities=19% Similarity=0.171 Sum_probs=101.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
.|+|+|.+|||||||+|+|++..+ ... ....+|.......+...++..++++||||+.........+...+...+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 799999999999999999998663 111 112233333333333223678999999999754332333444444443
Q ss_pred CCCccEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 101 KDGIHAFLVVFSVTNR---FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++++++|+|++.. -...+ ..+.+.+......-..+|++||+||+|.... . .. +..+.+..
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~---e~--------l~~l~~~l 300 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--E---EN--------LEEFKEKL 300 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--H---HH--------HHHHHHHh
Confidence 355999999999721 11122 3444455543221123599999999996322 1 11 22222332
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+..++ ..|+..+.++++|++.|...+...
T Consensus 301 ~~~i~------~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 301 GPKVF------PISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 32222 457788899999999999988764
No 101
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=1.6e-16 Score=122.77 Aligned_cols=156 Identities=17% Similarity=0.075 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|||||||+++++....... ..+|......... ..+ ...+.+|||||.... ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF-----------GGL 65 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhh-----------ccc
Confidence 3799999999999999999985543211 1223222222211 112 345889999995432 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....+..+|++++|+|++.+.+... ..++..+....+ ..|+++|+||+|.... ..... ...+...
T Consensus 66 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~~---------~~~~~~~ 131 (166)
T cd00877 66 RDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKAK---------QITFHRK 131 (166)
T ss_pred cHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCHH---------HHHHHHH
Confidence 1224567899999999984333222 234455555443 3499999999997533 11111 1122222
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ +.|++.+.++.++++.+.+.+.+
T Consensus 132 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 132 KNLQYY------EISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred cCCEEE------EEeCCCCCChHHHHHHHHHHHHh
Confidence 223333 56888889999999999877654
No 102
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.72 E-value=6.7e-16 Score=119.04 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=97.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh---
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG--- 98 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~--- 98 (277)
|+++|++|+|||||+|.|++...........+.|...... .....+.+|||||+.....+. .....+...+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF----NVNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE----EccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence 8999999999999999999433322212222223222222 122388999999998754422 11222322222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh-hcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-LCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~ 177 (277)
......+++++++|.....+..+...+.++... + .|+++|+||+|.... ......... +...++ ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 223456889999999855556666666676653 3 389999999998655 333333332 333333 122
Q ss_pred -CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 178 -~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+++ +.|+..+.++.++++.|...
T Consensus 145 ~~~~~------~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPII------LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceE------EEecCCCCCHHHHHHHHHHh
Confidence 2333 45666778899999888764
No 103
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=2.5e-16 Score=123.45 Aligned_cols=162 Identities=12% Similarity=0.082 Sum_probs=95.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|++|||||||++.+....... . .+|........ ...+..+.+|||||.. .+...
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~--~---~~T~~~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~ 77 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT--T---IPTIGFNVETV-EYKNLKFTMWDVGGQD-----------KLRPL 77 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc--c---CCccccceEEE-EECCEEEEEEECCCCH-----------hHHHH
Confidence 345899999999999999999997544321 1 12222222222 2466789999999943 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|++++|+|++.+-+..+ ...++...+... ...|++||+||.|..+. ...++.... +. +.
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~ 146 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LH 146 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CC
Confidence 4456788999999999983221111 122333332221 12489999999996543 222222111 00 01
Q ss_pred hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+.. .++. .+.|++.+.|+++++++|.+.+..
T Consensus 147 ~~~~~~~~~----~~~Sa~tg~gv~e~~~~l~~~i~~ 179 (182)
T PTZ00133 147 SVRQRNWYI----QGCCATTAQGLYEGLDWLSANIKK 179 (182)
T ss_pred cccCCcEEE----EeeeCCCCCCHHHHHHHHHHHHHH
Confidence 1111 1221 145788889999999999876654
No 104
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.72 E-value=3.2e-16 Score=120.35 Aligned_cols=156 Identities=21% Similarity=0.159 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|+|||||++.+++....... ..+............ .....+.+|||||.. .+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----------~~~~~ 67 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDY--KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQE-----------EFDAI 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchH-----------HHHHh
Confidence 37999999999999999999976542211 111111111111111 123468999999932 23333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+++++|++++|+|+..+-+... ..++..+..... ..|+++|+||+|.........++ ...+...
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~v~~~~---------~~~~~~~ 135 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG---DIPMVLVQTKIDLLDQAVITNEE---------AEALAKR 135 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhcccccCCCHHH---------HHHHHHH
Confidence 4445678899999999983322222 233333333222 24999999999976541111111 2333444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.+.+++ +.|++.+.+++++++.|..
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 136 LQLPLF------RTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHH
Confidence 444443 4567777899999988764
No 105
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.72 E-value=8.3e-17 Score=123.44 Aligned_cols=157 Identities=15% Similarity=0.085 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|||||||++.+++...... .+|...............+.+|||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998765322 11222222222222346799999999542 22333334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+..+|++++|+|++...+... ...++...+... ...|+++|+||+|.... ...++.... .. ...+... .
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~~~~--~ 135 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKYCSD--R 135 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-cC--CcccCCC--C
Confidence 567899999999983322222 112222222111 12499999999997543 222222111 00 0101000 1
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.+. ..++|++.+.|++++++.|.+
T Consensus 136 ~~~----~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 136 DWY----VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cEE----EEecccccCCChHHHHHHHhc
Confidence 111 125788899999999998854
No 106
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.72 E-value=2.6e-16 Score=120.95 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=92.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
+|+++|++|+|||||++.+++..+.+.. ..|... ...... ..+ ..+.+|||||.. .+...
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~l~i~D~~g~~-----------~~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIE-VDGIKVRIQIWDTAGQE-----------RYQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEE-ECCEEEEEEEEeCCCcH-----------hHHhh
Confidence 6999999999999999999876653221 222222 112222 333 357899999943 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+-+... ..++..+...... ..|+++|.||.|.... ..+... . ...+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~--~~v~~~--~-----~~~~~~~ 134 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK--RQVGDE--Q-----GNKLAKE 134 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc--cCCCHH--H-----HHHHHHH
Confidence 3445678899999999984322222 2333334333222 2489999999997543 111110 0 2223333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+..++ ++|++.+.++.+++..|.+.
T Consensus 135 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 135 YGMDFF------ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHhh
Confidence 333332 56888889999999988654
No 107
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=4.3e-16 Score=137.30 Aligned_cols=169 Identities=16% Similarity=0.142 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
-.|+|||.+|||||||+|+|++.... ++..+.|+...........+..++|+||||+.+.......+..++.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk---IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK---IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc---ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 46999999999999999999986541 2222333333333334456778999999999754333333444444443
Q ss_pred cCCCccEEEEEEeCCCC----CCHHHH-HHHHHHHHHhC---------cCccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779 100 AKDGIHAFLVVFSVTNR----FSQEEE-TAVHRLPNLFG---------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~----~~~~~~-~~~~~l~~~~~---------~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~ 165 (277)
..+|++++|+|++.. -...+. .+...|..... .-..+|++||+||+|.... ..+.+.+
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l---- 306 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV---- 306 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence 456999999999721 111121 22223332211 1123599999999997644 2332222
Q ss_pred CchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 166 PKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...+...+..++ ..|+..+.++.+|+..|..++...
T Consensus 307 ----~~~l~~~g~~Vf------~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 307 ----RPELEARGWPVF------EVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred ----HHHHHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHhh
Confidence 222333333333 457777889999999999888653
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.72 E-value=2.8e-16 Score=122.95 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=96.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|..|||||||++.+........ .+|........ ...+..+.+|||||.. .+...
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~-~~~~~~~~i~D~~Gq~-----------~~~~~ 77 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQD-----------KIRPL 77 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEE-EECCEEEEEEECCCCH-----------HHHHH
Confidence 3458999999999999999999985443211 22222222222 2567789999999932 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|++++|+|++.+-+..+ ...++...+... ...|++||+||.|.... ...+++.. .+.
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~--~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~---------~l~ 144 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVE--ARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITD---------KLG 144 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHH--HHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence 4456788999999999983322221 222333332211 12499999999997544 32222221 111
Q ss_pred hc--CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LC--DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~--~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.. ..+...+ .++||+.+.|+.+++++|...+.
T Consensus 145 l~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 145 LHSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred ccccCCCceEE---EeccCCCCCCHHHHHHHHHHHHh
Confidence 11 1111111 14578888999999999977654
No 109
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.72 E-value=4.6e-16 Score=121.86 Aligned_cols=162 Identities=15% Similarity=0.109 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|.+|||||||++.+++..+... ..+|...... .....++ ..+.+|||+|.. .+...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~----~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~-----------~~~~~ 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGVNFMEKTISIRGTEITFSIWDLGGQR-----------EFINM 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEECCEEEEEEEEeCCCch-----------hHHHh
Confidence 4799999999999999999987654221 1222221111 1122344 357899999943 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc-ccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE-KTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~-~~l~~~l~~~~~~~~~~~~~ 174 (277)
...+++++|++++|+|++++.+..+ ..++..+....... .| ++|+||+|...... ......... ...+..
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~-----~~~~a~ 137 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQ-----ARKYAK 137 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHH-----HHHHHH
Confidence 4456789999999999984433333 24444454432222 25 67899999753200 111111111 333434
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ++||+.+.+++++++.+.+.+..
T Consensus 138 ~~~~~~~------e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 138 AMKAPLI------FCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 4443332 56888899999999998876643
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.72 E-value=1.9e-16 Score=121.36 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|.+|||||||++.+....+. .. .+|........ ......+.+|||||.. .+......
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~----~pt~g~~~~~~-~~~~~~~~l~D~~G~~-----------~~~~~~~~ 63 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETV-EYKNISFTVWDVGGQD-----------KIRPLWRH 63 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCCCCcceEEE-EECCEEEEEEECCCCH-----------hHHHHHHH
Confidence 37999999999999999999755432 21 12222222222 2456779999999953 23333445
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
++.++|++++|+|++.+.+..+ ...++....... ...|++|++||.|.... ....+.... + .+ ....
T Consensus 64 ~~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~-~~-~~~~ 132 (159)
T cd04150 64 YFQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L-GL-HSLR 132 (159)
T ss_pred HhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h-Cc-cccC
Confidence 6788999999999983322211 122233322111 12499999999997543 222222211 1 00 0001
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
.+... ..++|++.+.|+++++++|.
T Consensus 133 ~~~~~---~~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 133 NRNWY---IQATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCEE---EEEeeCCCCCCHHHHHHHHh
Confidence 11111 12568888999999998874
No 111
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.72 E-value=5.2e-16 Score=122.21 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-C--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-G--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
++|+++|++|+|||||++.+++....... .+|....+....... + ..+.+|||||.. ++...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEY----VPTVFENYVTNIQGPNGKIIELALWDTAGQE-----------EYDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCC----CCeeeeeeEEEEEecCCcEEEEEEEECCCch-----------hHHHH
Confidence 47999999999999999999977653221 223222222222222 2 358899999943 22233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|++++|+|++.+.+..+. .++..+... ..+ .|+++|+||.|.... ......+. ......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence 33456789999999999844333332 233333332 222 499999999997543 11100110 011333444
Q ss_pred hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+. .++ .+|++.+.++.+++..+...+..
T Consensus 138 ~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAFAYL------ECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCcEEE------EccCCCCCCHHHHHHHHHHHHHh
Confidence 4443 332 56788889999999998877654
No 112
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.72 E-value=1.5e-16 Score=127.28 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEEEEEeeeCCceE
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTVLKDGQVV 71 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (277)
+|+++|++|+|||||+++|+...-.-.. ....+.|........ .+.+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~-~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF-STPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE-ecCCceE
Confidence 5899999999999999999753311000 001344544444443 3678899
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
.||||||+.+ +...+..+...+|++++|+|++.+....+...+.++.. .+. .++++|+||+|...
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999532 22222334567899999999986665555555454443 332 26788999999764
Q ss_pred cccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 199 (277)
.....+...... ++.++...+.... ...+.|+..+.++.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence 311223344443 5555555553210 112446666655543
No 113
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.72 E-value=2.1e-16 Score=124.63 Aligned_cols=165 Identities=18% Similarity=0.114 Sum_probs=97.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
++|+++|++|||||||++.+++..+.... .+|....+......++ ..+.+|||||... +....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEE-----------FDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChh-----------ccccc
Confidence 47999999999999999999977653221 1222222211122333 4588999999542 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----C-CchHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPLK 170 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~-~~~~~ 170 (277)
..++..+|++++|+|++.+-+... ..++..+..... ..|++||.||+|.... ....+..... . .....
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEGL 140 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHHH
Confidence 335678999999999984433322 234555554322 2499999999997654 2222111100 0 00012
Q ss_pred HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+....+. .++ ++||+.+.++++++..+.+.+..
T Consensus 141 ~~~~~~~~~~~~------e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 141 AVAKRINALRYL------ECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHcCCCEEE------EccCCcCCCHHHHHHHHHHHHhc
Confidence 23333232 222 56888889999999999877643
No 114
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.72 E-value=1.6e-16 Score=123.47 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=92.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|+|||||++.|++...... .+|........ ...+..+.+|||||.. .+...
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i-~~~~~~~~~~D~~G~~-----------~~~~~ 74 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTV-QSDGFKLNVWDIGGQR-----------AIRPY 74 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEE-EECCEEEEEEECCCCH-----------HHHHH
Confidence 4468999999999999999999998754211 11111112222 2457789999999943 22333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHH-HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAV-HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~-~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|+....+... ...+ ..+..... ...|+++++||+|.... ....++... +. + .
T Consensus 75 ~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~ 143 (173)
T cd04155 75 WRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL--AGVPVLVFANKQDLATA--APAEEIAEA-----LN-L-H 143 (173)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh--cCCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-c
Confidence 3344577899999999983211111 1111 12221111 12499999999997654 333333221 10 0 0
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
....+...+ .+.|++.+.|+++++++|.+
T Consensus 144 ~~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 144 DLRDRTWHI---QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ccCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence 111121111 25688899999999998753
No 115
>PLN03118 Rab family protein; Provisional
Probab=99.72 E-value=9.1e-16 Score=123.19 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=97.7
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVG 90 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~ 90 (277)
.++.....+|+|+|++|||||||+++|++.... ... ............. .++ ..+.||||||...
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~-~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~--------- 74 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLA-PTIGVDFKIKQLT-VGGKRLKLTIWDTAGQER--------- 74 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcC-CCceeEEEEEEEE-ECCEEEEEEEEECCCchh---------
Confidence 344455689999999999999999999976541 111 1111222222222 233 4688999999543
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (277)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (277)
+......+++.+|++++|+|++.+-+.... .+...+.. .......|+++|.||+|.... ..+... .
T Consensus 75 --~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~Dl~~~--~~i~~~--~----- 142 (211)
T PLN03118 75 --FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVEL-YSTNQDCVKMLVGNKVDRESE--RDVSRE--E----- 142 (211)
T ss_pred --hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECcccccc--CccCHH--H-----
Confidence 222233446788999999999843222222 12222322 222222489999999997543 121100 0
Q ss_pred HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+....+..++ ++|++.+.+++++++.|...+..
T Consensus 143 ~~~~~~~~~~~~~------e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 143 GMALAKEHGCLFL------ECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred HHHHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 1222222233222 56777889999999999888754
No 116
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.72 E-value=5.4e-16 Score=120.79 Aligned_cols=162 Identities=19% Similarity=0.112 Sum_probs=96.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|.+|+|||||++.+....+... ..+|...........++ ..+.+|||||... +....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED-----------YDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEECCEEEEEEEEECCCccc-----------hhhhh
Confidence 6899999999999999999997654221 12232222211112344 4578999999543 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC-----chHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK 170 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~-----~~~~ 170 (277)
..++.++|++++|+|++.+-+.... .++..+.... .. .|++||.||.|.... ..+.+.+..... ...+
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~~ 141 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PK--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHHH
Confidence 3356789999999999844333332 2444454432 22 499999999997544 222222211000 1122
Q ss_pred HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+....+. .++ ++||+.+.|+.++++.+.+.
T Consensus 142 ~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 142 KLARDLKAVKYV------ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHhCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence 23333332 333 56888889999999887653
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.72 E-value=1.1e-16 Score=125.14 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC------ccccCC-------CCCcceeeEEEEEe----eeCCceEEEEeCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKA------FKASAG-------SSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~------~~~~~~-------~~~~t~~~~~~~~~----~~~~~~~~liDtpG~~~~ 82 (277)
++|+++|++|+|||||+++|++... +..... ..+.+......... ...+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 4699999999999999999986321 000000 01122222111111 123456889999997642
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
......++.++|++++|+|++.+.+..+...+..+.. .+ .|+++|+||+|.... .......
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~---~~~~~~~ 141 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA---DPERVKQ 141 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC---CHHHHHH
Confidence 2222334557799999999985555555444433322 12 389999999997533 1111122
Q ss_pred ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
. +. ...+... ......|++.+.++++|++.+...++
T Consensus 142 ~-----~~---~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 142 Q-----IE---DVLGLDP---SEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred H-----HH---HHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 1 22 2222210 11236688889999999999877653
No 118
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=4.4e-16 Score=118.72 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-ee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|+|||||+|.+++....... ..|......... .. ....+.+||+||.. .+...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----------~~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE-----------RFRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChH-----------HHHHH
Confidence 47999999999999999999987764331 112222222111 12 23568899999943 23333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....+..+|++++|+|++.+-+... ..++..+...... ..|+++++||+|..... ....+. ...+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~-~~~~~~--------~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQR-QVSTEE--------AQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccc-cccHHH--------HHHHHHH
Confidence 3445677899999999983211122 2344444443322 24999999999985221 111111 3334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
.+..++ ..|+..+.++.++++.|.
T Consensus 135 ~~~~~~------~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFF------ETSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEE------EEecCCCCCHHHHHHHHh
Confidence 344443 346666788899888764
No 119
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=6.2e-16 Score=122.50 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC-CCccccC-------------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR-KAFKASA-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
.++|+++|++|+|||||+++|++. ..+.... ...+.+......... +.+..+.+|||||..+
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~--- 77 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHAD--- 77 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHH---
Confidence 368999999999999999999852 1121110 012223322222222 5677899999999653
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+......++.++|++++|+|+..+.......++..+.. .+ .|+++|+||+|....
T Consensus 78 --------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 --------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred --------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 23333345567899999999985443333343443332 22 389999999997543
No 120
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=2.2e-16 Score=124.83 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEEEEEee-------------eCCceEEEEeCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVL-------------KDGQVVNVIDTPGLFD 81 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~-------------~~~~~~~liDtpG~~~ 81 (277)
.+|+++|++|+|||||+++|++.. .+... ....+.|.......... ..+..+.+|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999998631 11000 00112333333222221 1256799999999632
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l 161 (277)
+...+......+|++++|+|+....+..+...+.+.. ..+. |+++++||+|.... ......+
T Consensus 81 -----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~~----~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILCK----KLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcCC----CEEEEEECcccCCH--HHHHHHH
Confidence 2222222345679999999998555555444444332 2332 89999999998754 3333333
Q ss_pred cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ....+...+...+.. .-...+.|++.+.++.+|++.+...++.
T Consensus 143 ~~-~~~~l~~~~~~~~~~---~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFK---NSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HH-HHHHHHHHHHhcCcC---CCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 32 000122222111111 0112356888889999999999887653
No 121
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.71 E-value=1.6e-15 Score=118.65 Aligned_cols=165 Identities=15% Similarity=0.104 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|.+|+|||||++.+++..+.... .+|...........++ ..+.+|||+|-. ++..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e-----------~~~~ 68 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSP-----------YYDN 68 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEECCEEEEEEEEECCCch-----------hhHh
Confidence 3478999999999999999999876642221 2222222211122343 358899999932 2333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-CCchH
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPL 169 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~~~~~ 169 (277)
....+++++|++++|+|++.+.+... ..++..+..... . .|++||+||.|+.... ..+...... . .....
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~ 144 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQG 144 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHHH
Confidence 44456789999999999995544443 345556666432 3 4999999999964321 111000000 0 00123
Q ss_pred HHHHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHH
Q 023779 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (277)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~ 207 (277)
.++....+. .|+ ++||+.+.+ +.+++..+.+.
T Consensus 145 ~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 145 ANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 445555553 344 578888888 99999888764
No 122
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=1.7e-16 Score=121.87 Aligned_cols=158 Identities=13% Similarity=0.056 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|||||||++.|++...+.... .+|........ ...+..+.+|||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~---~~t~g~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQII---VPTVGFNVESF-EKGNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCccee---cCccccceEEE-EECCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 48999999999999999999865322221 12222111212 24667899999999542 22333345
Q ss_pred CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+.++|++++|+|++.+.+... ...+..+..... .....|+++|+||+|.... ......... + .+......
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~~~~-----l-~~~~~~~~ 137 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKITQL-----L-GLENIKDK 137 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHHHHH-----h-CCccccCc
Confidence 678899999999984332211 222232222110 0123499999999997644 222211111 0 00000011
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
.+. ..+.|++.+.++++++++|.
T Consensus 138 ~~~----~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 138 PWH----IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eEE----EEEeeCCCCCchHHHHHHHh
Confidence 111 12568888999999999875
No 123
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.71 E-value=5.1e-16 Score=120.31 Aligned_cols=160 Identities=18% Similarity=0.063 Sum_probs=93.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|+|||||++.+++........ ............. .++. .+.+|||||.. .+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~l~i~D~~G~~-----------~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLE-VDGHFVTLQIWDTAGQE-----------RFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEE-ECCeEEEEEEEeCCChH-----------HHHH
Confidence 34899999999999999999999766432221 1111111111222 3333 47899999932 3333
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
....++..+|++++|++++.+-+... ..+...+...... ....|+++|+||+|..... .... . .+++
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~-~--------~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE-E--------AQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH-H--------HHHH
Confidence 44445678899999999984322222 2233333332211 1224999999999975330 1111 1 3344
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
....+...+ .+.|++.+.++.++++.+.+
T Consensus 140 ~~~~~~~~~-----~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPY-----FETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeE-----EEEECCCCCCHHHHHHHHHh
Confidence 444442222 25677888899999888764
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.71 E-value=2.7e-16 Score=120.39 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|||||||++++++... ... ..|........ .+.+..+.+|||||... +.......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETV-EYKNVSFTVWDVGGQDK-----------IRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEE-EECCEEEEEEECCCChh-----------hHHHHHHH
Confidence 589999999999999999998763 211 22222222222 24567899999999543 12223334
Q ss_pred CCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 101 KDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+..+|++++|+|+..+-+... ...+..+..... ....|+++|+||+|.... ...++.... +... .....
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~~-----~~~~--~~~~~ 133 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIEK-----LGLE--KILGR 133 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHHh-----hChh--hccCC
Confidence 567799999999983211111 122222222111 122499999999998765 323222211 1100 01111
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
... ....|++.+.++.++++.|..
T Consensus 134 ~~~---~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 134 RWH---IQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred cEE---EEEeeCCCCCCHHHHHHHHhh
Confidence 111 124577788999999888753
No 125
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=3.2e-16 Score=121.97 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=91.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|++|+|||||++.|++...... .+|........ .+.+..+.+|||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEI-VYKNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEE-EECCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987654221 12222222222 25677899999999542 233333
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++.++|++++|+|++.+-+... ...++....... ...|++|++||+|.... ...++.... +. + ...
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~--~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~-~-~~~ 146 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPL--TKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISES-----LG-L-TSI 146 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC-c-ccc
Confidence 45678899999999983321111 112222222111 12499999999997543 222222111 10 0 000
Q ss_pred -CCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
...+. ..++||..+.+++++++.|.
T Consensus 147 ~~~~~~----~~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 RDHTWH----IQGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCceE----EEecccCCCCCHHHHHHHHh
Confidence 11121 12568888899999998875
No 126
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.71 E-value=4.5e-16 Score=123.18 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE-EEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK-TTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|++|+|||||++++++..+.. +. ...|....+. .....++. .+.+|||||... +...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~-~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~ 66 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLV-GP--YQNTIGAAFVAKRMVVGERVVTLGIWDTAGSER-----------YEAM 66 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCC-cC--cccceeeEEEEEEEEECCEEEEEEEEECCCchh-----------hhhh
Confidence 479999999999999999999766422 11 1222221111 11223443 466999999532 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++..-+... ..++..+... .. ..|+++|+||+|.... ......+. ......+...
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~~ 138 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQ--DRSLRQVD---FHDVQDFADE 138 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccccc--ccccCccC---HHHHHHHHHH
Confidence 2334678899999999983322221 2344444443 22 2499999999997543 10000000 0012333333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.+|++.+.+.+..
T Consensus 139 ~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 139 IKAQHF------ETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 343333 45777889999999999877643
No 127
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.71 E-value=5.9e-16 Score=118.81 Aligned_cols=157 Identities=20% Similarity=0.143 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||+|+|++......... ..+.+....... ..+ ..+.+|||||... +....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAA--TIGVDFKVKTLT-VDGKKVKLAIWDTAGQER-----------FRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCC--cccceEEEEEEE-ECCEEEEEEEEECCCchh-----------hhhhh
Confidence 4799999999999999999997764222211 111121111111 232 4688999999432 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++.+|++++|+|++..-+... ..++..+..... ....|+++|+||+|..... ...++ ...+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~ 135 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKH 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHc
Confidence 334578899999999983332222 233444444322 2234899999999976331 11221 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+..++ +.|++.+.++.++++.+...
T Consensus 136 ~~~~~------~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 136 NMLFI------ETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred CCEEE------EEecCCCCCHHHHHHHHHHh
Confidence 33333 45777788999999887653
No 128
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.71 E-value=8.4e-16 Score=123.21 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++....... ..+.........+...++ ..+.+|||||.. .+....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~--~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~-----------~~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS--DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE-----------RFRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC--CceeceEEEEEEEEECCCCEEEEEEEeCCcch-----------hHHHHH
Confidence 78999999999999999999977652221 112222221222221223 358899999943 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHHhh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~~ 175 (277)
..++.++|++++|+|++.+-+... ..++..+...... ...|++||.||.|.... ..+ .+. ...+...
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~--~~v~~~~--------~~~~~~~ 138 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ--RQVTREE--------AEKLAKD 138 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc--cccCHHH--------HHHHHHH
Confidence 445678899999999984322222 2333333333222 12368899999997543 111 111 2233444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ +.|++.+.++.++++.|.+.+..
T Consensus 139 ~~~~~~------e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 139 LGMKYI------ETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred hCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 443333 46778889999999999886654
No 129
>PRK11058 GTPase HflX; Provisional
Probab=99.71 E-value=9.8e-16 Score=134.15 Aligned_cols=165 Identities=17% Similarity=0.089 Sum_probs=101.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+|+|.+|||||||+|+|++...+... ..+.|...............+.+|||||+.... ...+...+...+ .
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~--~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l--p~~lve~f~~tl-~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAAD--QLFATLDPTLRRIDVADVGETVLADTVGFIRHL--PHDLVAAFKATL-Q 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeecc--CCCCCcCCceEEEEeCCCCeEEEEecCcccccC--CHHHHHHHHHHH-H
Confidence 57999999999999999999987754222 123343333333332334478999999985321 122233344333 3
Q ss_pred cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
....+|++++|+|++.+...... .+..++..+...+ .|+++|+||+|.... .. ..+.. ...+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~--~~--~~~~~----------~~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD--FE--PRIDR----------DEENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc--hh--HHHHH----------HhcCC
Confidence 45788999999999854433333 2334455442222 499999999997643 11 11110 01121
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.++ ...|++.+.|++.|++.|...+..
T Consensus 337 ~~~-----v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 337 PIR-----VWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cce-----EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 111 235888899999999999988754
No 130
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=3e-16 Score=126.54 Aligned_cols=196 Identities=17% Similarity=0.176 Sum_probs=126.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVKC 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~~ 96 (277)
+.++|+++|.+|+|||||.|.+.|..+ +..+....|+++....+.+.+..++.|+||||+....... ......+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv--~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKV--SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCcc--ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 568999999999999999999999998 4456677888888888877888999999999998654322 1112222233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH--HHHhcccCCch-HHHHH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL--EDFLGHECPKP-LKEIL 173 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l--~~~l~~~~~~~-~~~~~ 173 (277)
.+.+...+|++++++|++..-.....+.+..+.....- |-++|+||.|.......-+ .+.+....... ..++-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~i----ps~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKI----PSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcC----CceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 34456788999999999843333334566666665333 8999999999875410000 11111100000 01111
Q ss_pred hhcCC-e----------EEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 174 QLCDN-R----------CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 174 ~~~~~-~----------~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
+++.. . +--|......|+..+.++.+|.+++....+. +...|+.++
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~-gpW~y~a~i 281 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPP-GPWKYPADI 281 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCC-CCCCCCccc
Confidence 22110 1 2224444566889999999999999887654 444565554
No 131
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.70 E-value=3.6e-16 Score=121.72 Aligned_cols=162 Identities=20% Similarity=0.159 Sum_probs=91.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCC
Q 023779 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKD 102 (277)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 102 (277)
++|++|||||||+|+|++.... .+. ..+.|........ .+. +..+.+|||||+.........+...+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~~-~~~~t~~~~~~~~-~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VAN-YPFTTLEPNLGVV-EVPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-ccC-CCceeecCcceEE-EcCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999987641 111 1222333333322 255 7889999999986432222222222222 245
Q ss_pred CccEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhCc-----CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 103 GIHAFLVVFSVTNRF-----S-QEE-ETAVHRLPNLFGK-----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 103 ~~~~~l~v~d~~~~~-----~-~~~-~~~~~~l~~~~~~-----~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
++|++++|+|+.... . ..+ ..+...+...... -...|+++|+||+|.... ........ .
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~~-------~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEELV-------R 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHHH-------H
Confidence 679999999998332 2 222 2222333322110 023499999999998755 33322210 1
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.........++ ..|+..+.++.++++.+...
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVV------PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEE------EEehhhhcCHHHHHHHHHhh
Confidence 11111122222 45777888999998887553
No 132
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.70 E-value=2.6e-16 Score=120.52 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|+|||||++.|+....... .+|........ ...+..+.+|||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETV-TYKNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEE-EECCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 589999999999999999976554221 12222222222 24567899999999542 22333445
Q ss_pred CCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+..+|++++|+|++.+.+.. ...+...+..... ...|+++|+||+|.... ....+.... +. . .....
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~~~-----~~-~-~~~~~ 132 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEISEK-----LG-L-SELKD 132 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHHHH-----hC-c-cccCC
Confidence 67889999999998322111 1222222222111 12499999999997644 222222111 10 0 00011
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
... ...+.|++.+.+++++++.+.+
T Consensus 133 ~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 133 RTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 101 1236688889999999998753
No 133
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=7.7e-16 Score=119.14 Aligned_cols=157 Identities=16% Similarity=0.120 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++++++....+... .+.+........ .+.+ ..+.+|||||... +....
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~-----------~~~~~ 73 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--ATIGVDFMIKTV-EIKGEKIKLQIWDTAGQER-----------FRSIT 73 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeEEEEEEE-EECCEEEEEEEEECCCcHH-----------HHHHH
Confidence 889999999999999999998655422211 111112222222 2344 3478899999432 22232
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++...+... ..++..+......+ .|+++|.||+|.... ..+.... .+.+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~~ 142 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQR-------AEEFSDAQ 142 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHH-------HHHHHHHc
Confidence 345677899999999983322221 23344444443333 388999999997643 2221111 11122222
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...++ .+|+..+.++.++++.|.+.
T Consensus 143 ~~~~~------~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 143 DMYYL------ETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred CCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence 22222 56778889999999998765
No 134
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.70 E-value=1.2e-15 Score=118.19 Aligned_cols=158 Identities=16% Similarity=0.125 Sum_probs=90.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH-HH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV-KC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~-~~ 96 (277)
.+|+++|++|+|||||++.+++....... ............ ....+ ..+.+|||||... +. ..
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 68 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERT-VEIDGERIKVQLWDTAGQER-----------FRKSM 68 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEE-EEECCeEEEEEEEeCCChHH-----------HHHhh
Confidence 78999999999999999999876542221 111111111111 22344 4688999999432 22 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+-+.... .++..+..... ....|+++|.||+|.... ..+ .+. ...+..
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~--~~~~~~~--------~~~~~~ 137 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQ--IQVPTDL--------AQRFAD 137 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhh--cCCCHHH--------HHHHHH
Confidence 33456788999999999844333332 33333333221 122499999999997543 111 111 122333
Q ss_pred hcCCeEEEEeCCCcccccC---hhHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKG---TEQVRQLLSLVNSVI 208 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~---~~~~~~L~~~i~~~~ 208 (277)
.....++. +|++. ..++.+++..+.+.+
T Consensus 138 ~~~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 138 AHSMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HcCCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 33333433 45554 567888777765543
No 135
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.70 E-value=1.5e-15 Score=117.84 Aligned_cols=162 Identities=17% Similarity=0.096 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||+|++++........ ............ .+.+. .+.+|||||... +....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~-----------~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEV-TVDDKLVTLQIWDTAGQER-----------FQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEE-EECCEEEEEEEEeCCChHH-----------HHhHH
Confidence 379999999999999999999776422211 111111111112 23443 467999999432 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
..++.++|++++++|+..+.+.... .+...+...+.. ....|+++|+||+|...+.....+ . ...+..
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~-~--------~~~~~~ 137 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTK-K--------AQQWCQ 137 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHH-H--------HHHHHH
Confidence 3456788999999999833222221 222222222221 112499999999998632101111 1 223444
Q ss_pred hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+ ..++ ..|+..+.++..+++.|...+.+
T Consensus 138 ~~~~~~~~------~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 138 SNGNIPYF------ETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred HcCCceEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 444 2333 45777889999999998876544
No 136
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.70 E-value=2.9e-15 Score=116.84 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+.+..+... ..+|...........++ ..+.+|||||.. .+....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~-----------~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSP-----------YYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhcc
Confidence 5899999999999999999997664222 12222222211122344 347899999943 223333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---c-CCchHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---E-CPKPLKE 171 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~-~~~~~~~ 171 (277)
..+++++|++++|+|++.+-+... ..++..+..... . .|+++|.||.|+.... ......-.. . ......+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~~ 142 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGCA 142 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHHH
Confidence 446789999999999985544443 345556666543 3 3999999999964320 111110000 0 0112344
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHH
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSV 207 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~ 207 (277)
+....+. .++ ++||+.+.+ +.+++..+.+.
T Consensus 143 ~a~~~~~~~~~------E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 143 IAKQLGAEIYL------ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHhCCCEEE------ECccCcCCcCHHHHHHHHHHH
Confidence 4444453 333 568888875 99999888764
No 137
>PTZ00369 Ras-like protein; Provisional
Probab=99.70 E-value=7.5e-16 Score=121.53 Aligned_cols=161 Identities=19% Similarity=0.146 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|.+|+|||||++++++..+..... +|...........++ ..+.+|||||..+. ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYD----PTIEDSYRKQCVIDEETCLLDILDTAGQEEY-----------SAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcC----CchhhEEEEEEEECCEEEEEEEEeCCCCccc-----------hhh
Confidence 3899999999999999999999766432211 121111111111333 34779999996542 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++++-+... ..++..+..... ....|+++|.||+|.... ..+.... ...+...
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~--~~i~~~~-------~~~~~~~ 139 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSE--RQVSTGE-------GQELAKS 139 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 2334667899999999984333222 233344443322 112489999999996433 1111110 1223333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.+++..+.+.+..
T Consensus 140 ~~~~~~------e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 140 FGIPFL------ETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred hCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 55778889999999998776543
No 138
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.70 E-value=4.4e-16 Score=120.09 Aligned_cols=159 Identities=17% Similarity=0.185 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|++|+|||||++++++.... +.. ..|...........++. .+.+|||||...... ....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~--~~~--~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~---- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFI--GEY--DPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT------EQLE---- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccc--ccc--CCChHHhceEEEEECCEEEEEEEEECCCCccccc------chHH----
Confidence 4899999999999999999865431 111 11111111111123444 477999999763100 0111
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.++..+|++++|+|++.+-+... ..++.++..........|+++|+||+|.... ..+... ....+....+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~-------~~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTE-------EGEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHH-------HHHHHHHHcC
Confidence 23456799999999984333222 3344555553210122499999999996433 111110 0223334444
Q ss_pred CeEEEEeCCCcccccCh-hHHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGT-EQVRQLLSLVNSVI 208 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~-~~~~~L~~~i~~~~ 208 (277)
..++ ++|++.+ .++.+++..+.+.+
T Consensus 138 ~~~~------e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFF------EVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CEEE------EeCCCCCchhHHHHHHHHHHHH
Confidence 4433 4566666 48999999887654
No 139
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.70 E-value=5e-16 Score=126.29 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=117.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
+|+++|+.|+|||||+++|+..... ..|. ...+.|........ .+.+..+.+|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~-~~~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASF-QWEDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEE-EECCEEEEEEeCCCccch--
Confidence 4899999999999999999743210 0010 01122233333333 367889999999998752
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
...... ++..+|++++|+|+..+.......++..+... +. |+++++||+|.... .....+.
T Consensus 78 -----~~~~~~----~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~~----P~iivvNK~D~~~a---~~~~~~~-- 138 (237)
T cd04168 78 -----IAEVER----SLSVLDGAILVISAVEGVQAQTRILWRLLRKL-NI----PTIIFVNKIDRAGA---DLEKVYQ-- 138 (237)
T ss_pred -----HHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECccccCC---CHHHHHH--
Confidence 122333 34556999999999977776666676766543 32 89999999997643 3444443
Q ss_pred CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 023779 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKEYSKRE 244 (277)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (277)
++...++.+.++++.+..... +.. ..+. ..+.++.+.+.+++.
T Consensus 139 ------~i~~~~~~~~~~~~~p~~~~~----------------~~~-------------~~~~--~~~l~e~vae~dd~l 181 (237)
T cd04168 139 ------EIKEKLSSDIVPMQKVGLAPN----------------ICE-------------TNEI--DDEFWETLAEGDDEL 181 (237)
T ss_pred ------HHHHHHCCCeEEEECCcEeee----------------eee-------------eeec--cHHHHHHHhcCCHHH
Confidence 344556777777664421100 000 0011 134456667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 023779 245 ISKLMGQMQESYEDRIKRMAEMRAG 269 (277)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (277)
++++.+..+...++..+.+++.+.+
T Consensus 182 ~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 182 LEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 8888887777776777777666554
No 140
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.70 E-value=2.4e-15 Score=118.82 Aligned_cols=167 Identities=17% Similarity=0.133 Sum_probs=98.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|..|||||||++.++...+.... .+|....+......++ ..+.+|||||.. .+...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e-----------~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEY----IPTVFDNYSAQTAVDGRTVSLNLWDTAGQE-----------EYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCC----CCceEeeeEEEEEECCEEEEEEEEECCCch-----------hhhhh
Confidence 378999999999999999999876542221 2222222211112344 357899999943 23333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLK 170 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~ 170 (277)
...+++++|++++|+|++.+-+.... .++..+.... .. .|++||.||.|..... ...+...... .....+
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-PN--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 44567899999999999844333332 2334344332 23 4999999999975330 1111111100 001123
Q ss_pred HHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 171 EILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 171 ~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+....+. .++ ++||+.+.++.+++..+.+.+..
T Consensus 144 ~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 144 ALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHhc
Confidence 34333332 333 56788889999999999877643
No 141
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.70 E-value=2.7e-16 Score=123.53 Aligned_cols=166 Identities=8% Similarity=-0.030 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|.+|||||||+|.+++..+... .+|........ ...+..+.+|||||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEEL-AIGNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence 4558999999999999999999998654211 11222222222 24677899999999542 2233
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|++++|+|++.. .... ....++..++.. ....|+++|+||+|.... ...++..+. .. +.....
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~-~~~~-~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-l~--l~~~~~ 150 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDK-ERFA-ESKRELDALLSDEELATVPFLILGNKIDAPYA--ASEDELRYA-LG--LTNTTG 150 (184)
T ss_pred HHHHhCCCCEEEEEEECCcH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--CCHHHHHHH-cC--CCcccc
Confidence 34456789999999999832 1111 111222222211 012499999999997543 223222211 00 010000
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.++..-........+|+..+.++.+++++|..
T Consensus 151 ~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00000001112346688888999999999864
No 142
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.70 E-value=3.5e-16 Score=119.33 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=88.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (277)
|+++|++|||||||+|+|++..+.... .+|......... ..+..+.+|||||... +......++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVT-KGNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEE-ECCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 799999999999999999987652221 222222222222 4557789999999532 223333445
Q ss_pred CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 102 DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
..+|++++|+|++.. .... ....++...... ....|+++|+||+|.... ......... +. +.......
T Consensus 66 ~~~d~ii~v~d~~~~-~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~-~~~~~~~~ 135 (159)
T cd04159 66 RGVNAIVYVVDAADR-TALE-AAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN-LKSITDRE 135 (159)
T ss_pred hcCCEEEEEEECCCH-HHHH-HHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC-cccccCCc
Confidence 678999999999822 1111 111223322211 112489999999997654 333322221 00 00000111
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+.. ...|++.+.++.++++.|..
T Consensus 136 ~~~----~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 136 VSC----YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred eEE----EEEEeccCCChHHHHHHHhh
Confidence 111 24577788899999988754
No 143
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.69 E-value=7.4e-16 Score=140.62 Aligned_cols=165 Identities=17% Similarity=0.203 Sum_probs=112.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.|+++|+.++|||||+++|+|.+.... .....+.|...........++..+.||||||.. .+...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-----------~fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-----------KFLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-----------HHHHHHHH
Confidence 689999999999999999998542111 122346666665554443456789999999943 33333444
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
...++|++++|+|+..++...+...+.++.. .+.. +++||+||+|.... ..++..... +.+++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi~---~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGNP---MLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCC---eEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4567899999999987777777777776655 3431 46899999998755 455554444 55555544321
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
. .+..+.|+..+.|++.|++.|..+...
T Consensus 140 ~---~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 E---AKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred C---CcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 0 112356788889999999999887654
No 144
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.69 E-value=8.5e-16 Score=119.46 Aligned_cols=165 Identities=20% Similarity=0.160 Sum_probs=99.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|.+|+|||||+..++...+.... .+|...........++ ..+.+|||+|... +....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~----~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVSVDGNTVNLGLWDTAGQED-----------YNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC----CCcceeeeEEEEEECCEEEEEEEEECCCCcc-----------ccccc
Confidence 57999999999999999999976642221 1222111111112333 4578999999543 22333
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh--cccCCchHHHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL--GHECPKPLKEIL 173 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l--~~~~~~~~~~~~ 173 (277)
..+++++|++++|+|++.+-+... ..++..+.... .+ .|++||.||+|..... ....... ..-.....+.+.
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgnK~Dl~~~~-~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-PN--VPIVLVGTKLDLRDDK-QYLADHPGASPITTAQGEELR 142 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEeChhhccCh-hhhhhccCCCCCCHHHHHHHH
Confidence 346789999999999995555444 24555555443 23 4999999999975320 0000000 000001133444
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
...+...+. ++||+.+.+++++++.+.+.+
T Consensus 143 ~~~~~~~~~-----E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYI-----ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEE-----ECCCCcccCHHHHHHHHHHHH
Confidence 444432222 678889999999999998865
No 145
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=1.5e-15 Score=118.12 Aligned_cols=162 Identities=20% Similarity=0.144 Sum_probs=95.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
|+++|++|||||||++++++..+.... ..+...........++. .+.+|||||... +......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEVDGKPVELGLWDTAGQED-----------YDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEECCEEEEEEEEECCCCcc-----------cchhchh
Confidence 589999999999999999987652221 12222222222223443 488999999543 1222233
Q ss_pred cCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHHHH
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKEIL 173 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~~~ 173 (277)
.+.++|++++|+|++..-+... ..++..+..... ..|+++|+||+|..... .....+.... .......+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 141 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALA 141 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHH
Confidence 5678899999999984322222 234444544322 34999999999976431 1222221100 001123344
Q ss_pred hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
...+. .++ ++|++.+.++.++++.+.+.+
T Consensus 142 ~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 142 KRIGAVKYL------ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence 44443 333 468888899999999887654
No 146
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=8.1e-16 Score=118.15 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=112.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+.+...+|+++|++|||||+++-.+....+..+..+..+ .+.....+. .++. .+.+|||.| +++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiG--IDFk~kti~-l~g~~i~lQiWDtaG-----------Qer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIG--IDFKIKTIE-LDGKKIKLQIWDTAG-----------QER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEE--EEEEEEEEE-eCCeEEEEEEEEccc-----------chh
Confidence 445668999999999999999999986554222222222 222222222 4444 378999999 346
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
+.....+++++++++++|+|++..-+.+. ..|++.+.++...++ |.|+|+||+|+... ..+.. ..-+.
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~--R~V~~-------e~ge~ 142 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEK--RQVSK-------ERGEA 142 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeecccccccc--ccccH-------HHHHH
Confidence 66777778899999999999994444433 568888988877665 99999999997653 11111 11344
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+....|..++ +.||+.+.|+.+.+-.+...+.
T Consensus 143 lA~e~G~~F~------EtSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 143 LAREYGIKFF------ETSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HHHHhCCeEE------EccccCCCCHHHHHHHHHHHHH
Confidence 5566666666 5688888999988877766554
No 147
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.69 E-value=7.8e-16 Score=119.25 Aligned_cols=161 Identities=19% Similarity=0.110 Sum_probs=91.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
++|+++|++|+|||||+++|++........ .+............ ...+.+|||||..... ...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV----PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----CceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence 479999999999999999999876522211 11111111111123 3458899999966421 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHH--HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh----cccCCchHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQE--EETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL----GHECPKPLKE 171 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l----~~~~~~~~~~ 171 (277)
...+..+|++++|+|.+.+.+.. ...++..+..... ..|+++|+||+|.... ......+ ..-.......
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~ 140 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHH
Confidence 22346789999999998322222 2234444444322 2499999999997755 2211100 0000001222
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+....+. .++ ..|++.+.++.++++.|.+
T Consensus 141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 141 LAKEIGAIGYM------ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHHhCCeEEE------EeecCCCCCHHHHHHHHhh
Confidence 3333333 232 5577788899999988754
No 148
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.69 E-value=4.2e-16 Score=117.16 Aligned_cols=139 Identities=19% Similarity=0.247 Sum_probs=84.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|+|||||+|++++.... ...|... . +.. .+|||||.... ...+...+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~~-----~-~~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQAV-----E-YND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccceeE-----E-EcC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 7999999999999999999977531 1112111 1 222 58999996310 11222222234
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-e
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN-R 179 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~ 179 (277)
++++|++++|+|++.+.+.....++. ... .|+++|+||+|..... ...+ . ..++.+..+. .
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~-~--------~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE-R--------AKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH-H--------HHHHHHHcCCCc
Confidence 78899999999998544433322222 222 2899999999975431 1111 1 2233333332 2
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
++ ..|++.+.+++++++.+.
T Consensus 122 ~~------~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IF------EISSVDEQGLEALVDYLN 141 (142)
T ss_pred EE------EEecCCCCCHHHHHHHHh
Confidence 22 457788899999988763
No 149
>PLN03108 Rab family protein; Provisional
Probab=99.68 E-value=3.3e-15 Score=119.75 Aligned_cols=159 Identities=13% Similarity=0.078 Sum_probs=92.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+|+|++|+|||||++.+++..+...... ........... ...+ ..+.+|||||.. .+...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~--ti~~~~~~~~i-~~~~~~i~l~l~Dt~G~~-----------~~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMI-TIDNKPIKLQIWDTAGQE-----------SFRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CccceEEEEEE-EECCEEEEEEEEeCCCcH-----------HHHHH
Confidence 47999999999999999999997664322211 11111111111 2333 347899999943 22222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....+..+|++++|+|++..-+... ..++..+...... ..|+++|+||+|.........++ ...+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHRRAVSTEE---------GEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccccCCCHHH---------HHHHHHH
Confidence 3334567899999999983322222 1333334333322 24999999999975431011111 2223333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.+..++ +.|++.+.++.+++..+.+.+
T Consensus 141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFM------EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 457777788999887776554
No 150
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=2.7e-15 Score=114.25 Aligned_cols=162 Identities=23% Similarity=0.206 Sum_probs=93.1
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCC
Q 023779 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDG 103 (277)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (277)
++|++|+|||||+|+|++......+ ...+.+...............+.+|||||+.+............ ...+..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 5899999999999999987654222 12223333333333322267899999999987654332211122 223456
Q ss_pred ccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE
Q 023779 104 IHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF 183 (277)
Q Consensus 104 ~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (277)
+|++++|+++..........++..... .. .|+++|+||+|.... ......... ...........+++
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~---~~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~-- 142 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE---RG--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVI-- 142 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh---cC--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceE--
Confidence 799999999995444444331222221 12 389999999998765 333332210 00001111122333
Q ss_pred eCCCcccccChhHHHHHHHHHHHH
Q 023779 184 DNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 184 ~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..++..+.++..+++.+...
T Consensus 143 ----~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 143 ----AVSALTGEGIDELREALIEA 162 (163)
T ss_pred ----EEeeeccCCHHHHHHHHHhh
Confidence 34556667889988887654
No 151
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.68 E-value=2.7e-15 Score=115.28 Aligned_cols=159 Identities=20% Similarity=0.179 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||++++++..+.... ..+...........++ ..+.+|||||... +....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEDVQLNILDTAGQED-----------YAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCcccc----CCcchhhEEEEEEECCEEEEEEEEECCChhh-----------hhHHH
Confidence 37999999999999999999976542211 1111111111222333 4588999999543 22223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+...+++++|+++...-+... ..++..+..... ....|+++|+||+|........... ...+....
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~ 135 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQW 135 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHh
Confidence 334567799999999873221111 233333333311 2235999999999976420011111 22233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ ..|+..+.++.++++.+...+.
T Consensus 136 ~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 136 GVPYV------ETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred CCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 43333 5677888999999999876653
No 152
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.68 E-value=9e-16 Score=121.16 Aligned_cols=168 Identities=10% Similarity=-0.018 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|++|||||||++++++...... .+|.......+ .+.+..+.+|||||... ....
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i-~~~~~~~~l~D~~G~~~-----------~~~~ 79 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEEL-TIGNIKFKTFDLGGHEQ-----------ARRL 79 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999997654211 11222222222 35677899999999432 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCc-ccccHHHHhcccCCchH--HH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLED-HEKTLEDFLGHECPKPL--KE 171 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~-~~~~l~~~l~~~~~~~~--~~ 171 (277)
...++.++|++++|+|++..-+.. ....++...... ....|++|++||+|.... ....+.+++........ ..
T Consensus 80 ~~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccc
Confidence 334557889999999998321111 112233333221 122599999999997543 11122222211000000 00
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+.......+. ...+|++.+.|+.+++++|...
T Consensus 158 ~~~~~~~~~~----~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKVSGIRPIE----VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccCceeEE----EEEeEecCCCChHHHHHHHHhh
Confidence 0001111111 2366889999999999998764
No 153
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.68 E-value=2.2e-15 Score=121.03 Aligned_cols=113 Identities=22% Similarity=0.122 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|.+|||||||++.+++..+... .+|....... ..+....+.||||||... +......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~-~~~~~~~l~iwDt~G~e~-----------~~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYL-KQWGPYNISIWDTAGREQ-----------FHGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEE-EEeeEEEEEEEeCCCccc-----------chhhHHH
Confidence 4799999999999999999997765321 1222222221 223456789999999543 1222233
Q ss_pred cCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
++.++|++++|+|++.+.+.... .++..+......+ .|++||.||+|...
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 46788999999999944333332 2333333332333 38999999999764
No 154
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.68 E-value=5.8e-16 Score=127.96 Aligned_cols=117 Identities=17% Similarity=0.208 Sum_probs=75.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC--ccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA--FKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (277)
.++|+|+|+.|+|||||+++|+.... ...|.. ..+.+.......+ .+.+..+.+|||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG 80 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPG 80 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCC
Confidence 37899999999999999999973211 111110 0122222333333 37788999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+. ..+... ++..+|++++|+|++.++......++..+.. .+ .|+++++||+|....
T Consensus 81 ~~df-------~~~~~~----~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~~----~P~iivvNK~D~~~a 138 (267)
T cd04169 81 HEDF-------SEDTYR----TLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-RG----IPIITFINKLDREGR 138 (267)
T ss_pred chHH-------HHHHHH----HHHHCCEEEEEEECCCCccHHHHHHHHHHHh-cC----CCEEEEEECCccCCC
Confidence 6542 122222 3346699999999986666555555554433 22 389999999996544
No 155
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.68 E-value=1.9e-15 Score=136.98 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=101.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..++|+++|++++|||||+++|.+..+... ...+.|...........++..++||||||..++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 557999999999999999999998765332 223455555555444223348999999997642 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
...+..+|++++|+|+..+........+..+.. .+ .|+++++||+|........+...+.. ..-.....+
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~-~~----vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA-AN----VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH-cC----CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 334567899999999986665555555554433 22 28999999999754311222222221 111111222
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.... ..+.||..+.|+++|++.|..
T Consensus 223 ~~~~----~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTI----FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCce----EEEEECCCCCChHHHHHhhhh
Confidence 2111 125688899999999998854
No 156
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=5.3e-16 Score=118.65 Aligned_cols=145 Identities=18% Similarity=0.243 Sum_probs=88.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+++|++|+|||||+|.|.|..... ..|... .+... .+|||||+.... .++...+..
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~v------~~~~~--~~iDtpG~~~~~-------~~~~~~~~~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQAV------EFNDK--GDIDTPGEYFSH-------PRWYHALIT 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccceEE------EECCC--CcccCCccccCC-------HHHHHHHHH
Confidence 479999999999999999999764311 111111 12222 279999986432 122233233
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC-
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN- 178 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~- 178 (277)
.+..+|++++|+|++...+.... ++... +.. .|+++++||+|.... ..+. +.+++...+.
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~~--~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~ 121 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA----GLLDI-GVS--KRQIAVISKTDMPDA---DVAA---------TRKLLLETGFE 121 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH----HHHhc-cCC--CCeEEEEEccccCcc---cHHH---------HHHHHHHcCCC
Confidence 35788999999999843322221 22222 112 389999999996432 2221 2333333332
Q ss_pred -eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 179 -RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 -~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+++ ..|++.+.++++|++.+.+.+..
T Consensus 122 ~p~~------~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 122 EPIF------ELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CCEE------EEECCCccCHHHHHHHHHHhchh
Confidence 233 46888889999999999888754
No 157
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.68 E-value=2.9e-15 Score=136.36 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..|+++|++++|||||+++|+|..... ......+.|......... +++..+.+|||||.. .+...+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~-~~~~~v~~iDtPGhe-----------~f~~~~~ 68 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFP-LPDYRLGFIDVPGHE-----------KFISNAI 68 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEE-eCCEEEEEEECCCHH-----------HHHHHHH
Confidence 369999999999999999999854211 111234556666555444 566889999999942 3444444
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
..+.++|++++|+|++.+........+.++.. .+. .+++||+||+|.... ..++..... +.+++...+.
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 45678899999999986666666666665554 343 149999999998765 444333333 5555544321
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
. .-....+.|+..+.|++++++.+..++..
T Consensus 138 ~--~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 138 L--KNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred C--CCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 1 00012255778889999999998887764
No 158
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.68 E-value=1.2e-15 Score=117.36 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|.+|+|||||++.++......... +|.. ...... ..++. .+.||||||.... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEI-EVDSSPSVLEILDTAGTEQF-----------ASM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEE-EECCEEEEEEEEECCCcccc-----------cch
Confidence 689999999999999999998766533221 1211 111112 23443 4779999996432 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++.++|++++|+|++.+-+..+ ..++..+..... ....|+++|+||+|.... ..+.... ...+...
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~--~~~~~~~-------~~~~~~~ 135 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE--REVSSAE-------GRALAEE 135 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc--CccCHHH-------HHHHHHH
Confidence 2234567899999999984332222 334444544322 123499999999997543 1111100 1222222
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+..++ ++|++.+.++.+++..+.+.
T Consensus 136 ~~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 136 WGCPFM------ETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred hCCEEE------EecCCCCCCHHHHHHHHHHh
Confidence 233322 55778889999999888654
No 159
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.67 E-value=4e-15 Score=115.76 Aligned_cols=162 Identities=17% Similarity=0.083 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|.+|||||||+.+++...+.... .+|...........++ ..+.+|||||... +....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcC----CCcceeeeEEEEEECCEEEEEEEEECCCchh-----------hhhhh
Confidence 68999999999999999999875542221 1122111111112344 4578999999432 22233
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE 171 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~ 171 (277)
..++.++|++++|+|++.+-+.... .++..+.... . ..|++||.||.|..... ...+...... .......
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 142 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGLA 142 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHHH
Confidence 3456789999999999843333332 3444454432 2 24999999999975321 1121111110 0011233
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+....+. .++ ++||+.+.+++++++.+.+
T Consensus 143 ~~~~~~~~~~~------e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 143 MAKEIGAVKYL------ECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHcCCcEEE------EecccccCCHHHHHHHHHH
Confidence 4333332 222 6788889999999988765
No 160
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=114.05 Aligned_cols=167 Identities=16% Similarity=0.103 Sum_probs=103.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.-++|+++|.+|+|||||+|.+....+.... ...+.......... .+++ .+.+|||.| ++++..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qy--kaTIgadFltKev~-Vd~~~vtlQiWDTAG-----------QERFqs 73 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQY--KATIGADFLTKEVQ-VDDRSVTLQIWDTAG-----------QERFQS 73 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHh--ccccchhheeeEEE-EcCeEEEEEEEeccc-----------HHHhhh
Confidence 3489999999999999999999877653222 11222222222222 3344 377999999 234444
Q ss_pred HHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 96 CLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.-...|+++|+.++|+|+.. .+...+...-+++...-..+ -.-|+||++||+|.... .+...-.. ..+.+
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--~~r~VS~~-----~Aq~W 146 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--KSRQVSEK-----KAQTW 146 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--ccceeeHH-----HHHHH
Confidence 44456899999999999983 34444444444555443222 33599999999997653 11111111 14445
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...-|.-.+. +.||+...++...+..+.+..-.
T Consensus 147 C~s~gnipyf-----EtSAK~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 147 CKSKGNIPYF-----ETSAKEATNVDEAFEEIARRALA 179 (210)
T ss_pred HHhcCCceeE-----EecccccccHHHHHHHHHHHHHh
Confidence 5554543333 56888889999999888776544
No 161
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.67 E-value=7.9e-15 Score=117.85 Aligned_cols=164 Identities=15% Similarity=0.105 Sum_probs=96.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+|+|.+|||||||++.+++..+.... .+|....+......++ ..+.||||+|.. .+....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y----~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e-----------~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSY----VPTVFENYTASFEIDKRRIELNMWDTSGSS-----------YYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCccccceEEEEEECCEEEEEEEEeCCCcH-----------HHHHHh
Confidence 68999999999999999999976653221 1222221211122344 357899999933 333444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----CCchHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----CPKPLKE 171 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~~~~~~~ 171 (277)
..+++++|++|+|+|++.+-+... ..+...+...+ .. .|++||+||+|+.... ..+...-... .......
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~ 142 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-PN--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTV 142 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHH
Confidence 556889999999999984433322 22333333322 23 3999999999975431 1111110000 0011333
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHHH
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVI 208 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~~ 208 (277)
+....+. .|+ ++||+.+.+ +.+++..+....
T Consensus 143 ~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 143 LAKQVGAVSYV------ECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHHH
Confidence 4444453 344 567777664 999999887754
No 162
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.67 E-value=3.6e-15 Score=120.39 Aligned_cols=161 Identities=21% Similarity=0.114 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.+|+++|++|||||||++.+++..+......+... ......... ......+.+|||||... ....
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~----------~~~~--- 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM----------WTED--- 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch----------HHHh---
Confidence 37999999999999999999765542111111111 011111111 11335688999999541 1111
Q ss_pred hcCC-CccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKD-GIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~-~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++. ++|++++|+|++.+-+... ..++..+.... .....|+++|+||+|.... ..+... . ...+....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~--~~v~~~--~-----~~~~a~~~ 136 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS--REVSVQ--E-----GRACAVVF 136 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc--ceecHH--H-----HHHHHHHc
Confidence 1233 7899999999984332222 33444444432 1123499999999997544 211110 0 12233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ +.|+..+.+++++++.+...+..
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 43333 46888889999999999888754
No 163
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.67 E-value=2.6e-15 Score=116.85 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.+++....... .+|...........++. .+.+|||||... +....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence 68999999999999999999976642211 11221111111123333 578999999543 12222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC-----chHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP-----KPLK 170 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~-----~~~~ 170 (277)
...+.++|++++|++++.+-+... ..++..+..... ..|+++|+||+|.... ......+..... ...+
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~~ 141 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEGR 141 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHHH
Confidence 234578899999999983322222 223344443322 2499999999997543 222111111000 1122
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+....+...+ ..+|++.+.++.++++.|...
T Consensus 142 ~~~~~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 142 DMANKIGAFGY-----MECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHcCCcEE-----EEeccccCcCHHHHHHHHHHH
Confidence 33333332112 256888889999999988754
No 164
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.67 E-value=2e-15 Score=116.75 Aligned_cols=157 Identities=14% Similarity=0.078 Sum_probs=90.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|||||||++.+++.. .... .+|........ ...+..+.+|||||.. .+......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~---~~t~g~~~~~~-~~~~~~~~i~D~~G~~-----------~~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKV---APTVGFTPTKL-RLDKYEVCIFDLGGGA-----------NFRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Cccc---cCcccceEEEE-EECCEEEEEEECCCcH-----------HHHHHHHHH
Confidence 48999999999999999999762 2221 11221212222 2467789999999943 233333456
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+..+|++++|+|++..-+..+ ...++..+.... ...|++||+||.|.... ....+.... . .+..+....+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~-~--~l~~~~~~~~~ 136 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEY-L--SLEKLVNENKS 136 (167)
T ss_pred HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHh-c--CcccccCCCCc
Confidence 688899999999983322222 122333322211 23499999999997654 333333332 0 02222222233
Q ss_pred eEEEEeCCCcccccCh------hHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGT------EQVRQLLSLVN 205 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~------~~~~~L~~~i~ 205 (277)
.+..+ .+|+..+ .++.+.+++|.
T Consensus 137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence 33332 3456555 67888888874
No 165
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.67 E-value=5.5e-15 Score=114.93 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
++|+++|++|+|||||++.+++....... .+|...........++. .+.+|||||..... ...
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------RLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccc
Confidence 47999999999999999999976643221 12221111111223433 46799999965421 122
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc----C-CchHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE----C-PKPLK 170 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~----~-~~~~~ 170 (277)
...+..+|++++|+++..+-+..+ ..++..+... .. ..|+++|+||+|.... ......+... . .....
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD--PKTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC--hhhHHHHhhccCCCCCHHHHH
Confidence 234678899999999984323222 2344455443 22 2499999999997543 1111111100 0 01122
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+....+...+. .+|++.+.|++++++.+...
T Consensus 141 ~~~~~~~~~~~~-----e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCYV-----ECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEEE-----EecCCcCCCHHHHHHHHHHH
Confidence 333344432222 56888899999999887654
No 166
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.67 E-value=2.6e-15 Score=121.01 Aligned_cols=165 Identities=20% Similarity=0.145 Sum_probs=103.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCC-------------CCccee--eEE---------------------EEEe
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS-------------SGVTKT--CEM---------------------KTTV 64 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-------------~~~t~~--~~~---------------------~~~~ 64 (277)
+|+++|+.++|||||++.++...+ ..+... .+.|.. ... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 589999999999999999985332 111000 011110 000 0112
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
...++.++++||||..+ ........+. ...+|++++|+|+..+....+...+.++... +. |+++|+
T Consensus 80 ~~~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~i----p~ivvv 145 (224)
T cd04165 80 EKSSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-NI----PVFVVV 145 (224)
T ss_pred eeCCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEE
Confidence 24467899999999542 1222222221 1367999999999877888888888888764 43 899999
Q ss_pred eCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEE--------------------EEeCCCcccccChhHHHHHHHHH
Q 023779 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCV--------------------LFDNKTKDEAKGTEQVRQLLSLV 204 (277)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~s~~~~~~~~~L~~~i 204 (277)
||+|.... ..+...+.. +..++...+..-. ...+....|+..+.|++.|...|
T Consensus 146 NK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L 218 (224)
T cd04165 146 TKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFL 218 (224)
T ss_pred ECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHH
Confidence 99998765 556555554 5555543222110 11133355888889999999888
Q ss_pred HHH
Q 023779 205 NSV 207 (277)
Q Consensus 205 ~~~ 207 (277)
..+
T Consensus 219 ~~l 221 (224)
T cd04165 219 NLL 221 (224)
T ss_pred Hhc
Confidence 654
No 167
>PRK09866 hypothetical protein; Provisional
Probab=99.67 E-value=2.8e-15 Score=133.24 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=77.3
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
.+++|+||||+..... ..+.+.+... ...+|++|||+|+....+..+..+++.+... ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~eq----L~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQQ----LARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHHH----HhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4689999999986432 1233334443 4567999999999866788888888877764 321 28999999999
Q ss_pred CCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 149 DLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.........+..... +...+..... .+....+.|+..+.+++.|++.|..
T Consensus 301 l~dreeddkE~Lle~-----V~~~L~q~~i---~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRAL-----ISGTLMKGCI---TPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHHH-----HHHHHHhcCC---CCceEEEEeCCCCCCHHHHHHHHHh
Confidence 864321122222221 2222222111 2333346688889999999998877
No 168
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.3e-15 Score=114.89 Aligned_cols=162 Identities=23% Similarity=0.223 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+|+|.+|||||||+-.+....+.....+..+....... ...++ ..+.+|||.|.. ++...
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tkt---v~~~~~~ikfeIWDTAGQE-----------Ry~sl 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKT---VTVDDNTIKFEIWDTAGQE-----------RYHSL 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEE---EEeCCcEEEEEEEEcCCcc-----------ccccc
Confidence 389999999999999999988755542222222221111111 11233 457799999933 44455
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+|+++++.|+|+|+++.-+... +.|+..|+...++++ -+.||+||+|+...-....++ .+.+.+.
T Consensus 71 apMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~ 139 (200)
T KOG0092|consen 71 APMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAES 139 (200)
T ss_pred ccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHh
Confidence 5678999999999999993322222 566666666555432 344689999988631122221 3344444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.+..++ +.|++.+.|+.+|+..|...++..
T Consensus 140 ~gll~~------ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 140 QGLLFF------ETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred cCCEEE------EEecccccCHHHHHHHHHHhccCc
Confidence 444444 568899999999999999988753
No 169
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.66 E-value=6e-16 Score=113.70 Aligned_cols=141 Identities=21% Similarity=0.269 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+|||++|+|||||+++|.|..... .-|.... +.+ .+|||||-+-. ...+..++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~------~~~---~~IDTPGEyiE-------~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE------YYD---NTIDTPGEYIE-------NPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE------ecc---cEEECChhhee-------CHHHHHHHHH
Confidence 689999999999999999999865411 1121111 111 36999995531 2345556655
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+...+|++++|.|++.+.+.--. -+...|. +|+|-|+||+|...+. ..++ . .++++...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP----~fa~~f~----~pvIGVITK~Dl~~~~-~~i~----~-----a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPP----GFASMFN----KPVIGVITKIDLPSDD-ANIE----R-----AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCc----hhhcccC----CCEEEEEECccCccch-hhHH----H-----HHHHHHHcCCC
Confidence 66788999999999833221111 1222343 3999999999977321 2332 2 44566666654
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
..+ ..|+..+.++++|.++|.
T Consensus 122 ~if-----~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EIF-----EVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CeE-----EEECCCCcCHHHHHHHHh
Confidence 332 446677899999999875
No 170
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=4.2e-15 Score=118.10 Aligned_cols=158 Identities=20% Similarity=0.216 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+|+++|++|+|||||++.+++..+... . ..|. ...... ..+.+ ..+.+|||||... +....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~---~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~-----------~~~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y---RRTVEEMHRKE-YEVGGVSLTLDILDTSGSYS-----------FPAMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C---CCchhhheeEE-EEECCEEEEEEEEECCCchh-----------hhHHH
Confidence 589999999999999999997664221 1 1121 111111 22344 4688999999553 11222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh-h
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ-L 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~-~ 175 (277)
..++..+|++++|+|++...+... ..++..+..... ....|++||+||+|..... ..+... . ...... .
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~-~~v~~~-~------~~~~~~~~ 135 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEE-RQVPAK-D------ALSTVELD 135 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccc-ccccHH-H------HHHHHHhh
Confidence 234678899999999983322222 223333443322 1234999999999976421 111100 0 111111 1
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+..++ ..|++.+.++.++++.+...+.
T Consensus 136 ~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 136 WNCGFV------ETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred cCCcEE------EecCCCCCCHHHHHHHHHHHhh
Confidence 122222 4588888999999999988764
No 171
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=6e-15 Score=115.40 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+|+|++|+|||||++.+++........ +|............+ ..+.+|||||... +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY----PTIENTFSKIIRYKGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC----cchhhhEEEEEEECCEEEEEEEEECCChHh-----------hHHHH
Confidence 689999999999999999999765422111 111111111112333 3478999999542 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++...+... ..++..+....+ ....|+++|+||+|.... ..+... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~--~~~~~~-------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQ--RQVSTE-------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhc--CccCHH-------HHHHHHHHc
Confidence 234557799999999983322222 222233333222 123489999999997543 111110 022233333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
+..++ +.|+..+.++.+++..+.+.+....
T Consensus 137 ~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 137 GAAFL------ESSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCeEE------EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 33333 4577778899999999988776543
No 172
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=3.7e-15 Score=115.44 Aligned_cols=162 Identities=14% Similarity=0.012 Sum_probs=93.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+++|.+|||||||++++++..+.... ...+.......... ..++ ..+.+|||+|.... ..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~-~~~~~~~~l~~~d~~g~~~~-----------~~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTV-EVYGQEKYLILREVGEDEVA-----------IL 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEE-EECCeEEEEEEEecCCcccc-----------cc
Confidence 4589999999999999999999987653011 11111111221222 2344 35789999995432 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
....++.++|++++|+|++.+-+ ......++..... ....|+++|+||+|.... ... .... ..++...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~--~~~--~~~~-----~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQ--QQR--YEVQ-----PDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHHhcc-CCCCeEEEEEEccccccc--ccc--cccC-----HHHHHHH
Confidence 12223578899999999973311 1122234433211 123499999999997543 111 0111 2233333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+... ....|+..+.++.++++.+.+.+.
T Consensus 138 ~~~~~-----~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 138 LGLPP-----PLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cCCCC-----CEEEEeccCccHHHHHHHHHHHhh
Confidence 33211 124577888899999999887653
No 173
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=2.4e-15 Score=139.51 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=103.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+|+|+.++|||||+++|.+..+... ...+.|.....+.+. +++..++||||||+.++ ...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F-----------~~m 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVE-TNGGKITFLDTPGHEAF-----------TAM 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEE-ECCEEEEEEECCCCccc-----------hhH
Confidence 3558899999999999999999987665322 223455555555444 56788999999997653 112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH---HH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE---IL 173 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~---~~ 173 (277)
....+..+|++++|+|+..+........+..+.. .+ .|++|++||+|.... ..+..... +.. +.
T Consensus 354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~-~~----vPiIVviNKiDl~~a---~~e~V~~e-----L~~~~~~~ 420 (787)
T PRK05306 354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA-AG----VPIIVAINKIDKPGA---NPDRVKQE-----LSEYGLVP 420 (787)
T ss_pred HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh-cC----CcEEEEEECcccccc---CHHHHHHH-----HHHhcccH
Confidence 2233456799999999986666666666555443 23 289999999997543 22222221 111 11
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+..+..+. ..+.|+..+.|+..|++.|..
T Consensus 421 e~~g~~vp----~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 421 EEWGGDTI----FVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHhCCCce----EEEEeCCCCCCchHHHHhhhh
Confidence 22222111 124688888999999998864
No 174
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.66 E-value=1.5e-14 Score=114.54 Aligned_cols=171 Identities=17% Similarity=0.165 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee------CCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK------DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.+|+++|.+|||||||++.+++..+........+.. .....+... ....+.+|||+|.. .+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~--~~~k~~~~~~~~~~~~~~~l~IwDtaG~e-----------~~ 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCS--VDVKHHTYKEGTPEEKTFFVELWDVGGSE-----------SV 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeee--EEEEEEEEcCCCCCCcEEEEEEEecCCch-----------hH
Confidence 379999999999999999999876533221111111 111111111 12358899999943 23
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-----------------cCccCcEEEEEeCCCCCCcccc
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-----------------KNVFDYMIVVFTGGDDLEDHEK 155 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-----------------~~~~~~~ivv~nk~D~~~~~~~ 155 (277)
......+++++|++++|+|++++-+... ..|+..+....+ .....|++||.||.|+......
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 3344456789999999999995544433 234444433211 1112499999999997543001
Q ss_pred cHHHHhcccCCchHHHHHhhcCCeEEEEeCCCccc-ccChhHHHHHHHHHHHHH
Q 023779 156 TLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDE-AKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 156 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~L~~~i~~~~ 208 (277)
.-...+.. ...+...++......+.....+ +....+-..|.....+.+
T Consensus 148 ~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 196 (202)
T cd04102 148 SGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVI 196 (202)
T ss_pred chHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHH
Confidence 11112222 3445566776666655442211 111234444544444444
No 175
>COG2262 HflX GTPases [General function prediction only]
Probab=99.66 E-value=3.4e-15 Score=125.70 Aligned_cols=166 Identities=22% Similarity=0.158 Sum_probs=107.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.-+.|+++|-+|+|||||+|+|++..++....-. .|.+.........+++.+.+-||.||...- +..+...|...+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LF--ATLdpttR~~~l~~g~~vlLtDTVGFI~~L--P~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLF--ATLDPTTRRIELGDGRKVLLTDTVGFIRDL--PHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecccccc--ccccCceeEEEeCCCceEEEecCccCcccC--ChHHHHHHHHHH
Confidence 4478999999999999999999998876544222 222222222333458899999999998632 222333333333
Q ss_pred hhcCCCccEEEEEEeCCCCCC-HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFS-QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.. ...+|+++.|+|++.+.. ..-......+.++-..+ .|+++|+||+|.+.+ ......+. ...
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~~~~~~-----------~~~ 330 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEILAELE-----------RGS 330 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhhhhhhh-----------hcC
Confidence 22 368899999999994422 22245556666652223 499999999998866 33111111 111
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+ +....||..+.+++.|++.|...++.
T Consensus 331 ~-------~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 331 P-------NPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred C-------CeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1 22345889999999999999998874
No 176
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.65 E-value=7.4e-15 Score=120.17 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|..|||||||++.+++..+.. .. .+|.. .... ....++ ..+.||||+|... +...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~-~y---~pTi~d~~~k-~~~i~~~~~~l~I~Dt~G~~~-----------~~~~ 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE-QY---TPTIEDFHRK-LYSIRGEVYQLDILDTSGNHP-----------FPAM 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC-CC---CCChhHhEEE-EEEECCEEEEEEEEECCCChh-----------hhHH
Confidence 379999999999999999998765422 11 11221 1111 112344 4578999999543 1122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-------cCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG-------KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~-------~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (277)
...++..+|++++|+|++.+-+... ..++..+..... .....|++||+||+|.........++
T Consensus 65 ~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e--------- 135 (247)
T cd04143 65 RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE--------- 135 (247)
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------
Confidence 2224567899999999984333222 233444433210 11235999999999976421011111
Q ss_pred HHHHHhhc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 169 LKEILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++... +..++ +.|++.+.+++++++.|..+..
T Consensus 136 i~~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 136 VEQLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHhc
Confidence 22233221 12222 5688888999999999988653
No 177
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.65 E-value=7.8e-15 Score=112.20 Aligned_cols=156 Identities=19% Similarity=0.198 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|++|||||||++++++... .... ..+............ ...+.+||+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY---DPTIEDSYRKTIVVDGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc---CCChhHeEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999997763 2221 112212122222233 24578999999543 222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..+...|++++|+|....-+..+ ..++..+..... ....|+++|+||+|.........+. ...+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQVSKEE---------GKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccccceecHHH---------HHHHHHHcC
Confidence 34456799999999983222222 233334444333 1234999999999977531111111 222333333
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..++ ..|+..+.++.++++.|.+.
T Consensus 136 ~~~~------~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 136 CPFI------ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CcEE------EeccCCCCCHHHHHHHHHhh
Confidence 2332 45777788999999988653
No 178
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.65 E-value=3.1e-15 Score=139.32 Aligned_cols=217 Identities=19% Similarity=0.235 Sum_probs=122.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (277)
+..+.++|+|+|+.++|||||+|+|+..... ..+. ...+.|......... +++..+.+|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCC
Confidence 3456689999999999999999999732210 0000 012445555455444 7889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~ 158 (277)
+.+.. .+...+ +..+|++++|+|+..+....+...+..+... + .|+++++||+|.... .+.
T Consensus 85 ~~~~~-------~~~~~~----l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~---~~~ 145 (689)
T TIGR00484 85 HVDFT-------VEVERS----LRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA---NFL 145 (689)
T ss_pred Ccchh-------HHHHHH----HHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC---CHH
Confidence 87632 122233 3455999999999876777777776665543 3 289999999997754 344
Q ss_pred HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH---Hhh-cC----CCCCChHHHHHHHHHHHH
Q 023779 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV---IVQ-NG----GQPYTDELKRGATELRDK 230 (277)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~---~~~-~~----~~~~~~~~~~~~~~~~~~ 230 (277)
..+.. +...+ +...+... .+.++..+ +..+++.+... ... .. ...++.++.+...++ +
T Consensus 146 ~~~~~-----i~~~l---~~~~~~~~--ipis~~~~--~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 211 (689)
T TIGR00484 146 RVVNQ-----IKQRL---GANAVPIQ--LPIGAEDN--FIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKEL--R 211 (689)
T ss_pred HHHHH-----HHHHh---CCCceeEE--eccccCCC--ceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHH--H
Confidence 44443 33333 32221111 11222211 22222222110 000 00 011334444444444 5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023779 231 KAEVDSLKEYSKREISKLMGQMQESYEDRIKRMAE 265 (277)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (277)
.+.++.+.+.+++.++++.+......++..+.++.
T Consensus 212 ~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~~ 246 (689)
T TIGR00484 212 ENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIRK 246 (689)
T ss_pred HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 66667777888888888876544333444444443
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.65 E-value=4.4e-15 Score=136.68 Aligned_cols=162 Identities=15% Similarity=0.170 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-e--CCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-K--DGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
...++|+|+|++|+|||||+++|.+..+.... ..+.|.....+.... . .+..++||||||+. .+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e--~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe-----------~F 308 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKE--AGGITQKIGAYEVEFEYKDENQKIVFLDTPGHE-----------AF 308 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcccc--CCccccccceEEEEEEecCCceEEEEEECCcHH-----------HH
Confidence 35579999999999999999999876543221 123443333333221 1 34789999999953 23
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH--
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE-- 171 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~-- 171 (277)
......++..+|++++|+|+..+........+..+.. .+ .|++|++||+|.... ........ +..
T Consensus 309 ~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~-~~----iPiIVViNKiDl~~~---~~e~v~~e-----L~~~~ 375 (742)
T CHL00189 309 SSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA-AN----VPIIVAINKIDKANA---NTERIKQQ-----LAKYN 375 (742)
T ss_pred HHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh-cC----ceEEEEEECCCcccc---CHHHHHHH-----HHHhc
Confidence 3333334567799999999986666666666665543 22 399999999997643 22222221 111
Q ss_pred -HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 172 -ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+....+..+ .....||..+.++++|++.|..+.
T Consensus 376 ll~e~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 376 LIPEKWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred cchHhhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 111122111 112568888899999999887653
No 180
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.1e-14 Score=110.04 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=105.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee--eEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT--CEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
-+..+|+++|..+|||||||+..+-..+... ...|.- .....+ .+.++ .+.+|||.| +++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~----YqATIGiDFlskt~-~l~d~~vrLQlWDTAG-----------QER 83 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNT----YQATIGIDFLSKTM-YLEDRTVRLQLWDTAG-----------QER 83 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccc----ccceeeeEEEEEEE-EEcCcEEEEEEEeccc-----------HHH
Confidence 3458999999999999999999985443222 223332 222222 23444 478999999 456
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
+...+..+++++.++++|+|++.+-+.+. ..|++-+..-.|.+. .-+++|+||.|+..+ ..+.. .+ -..
T Consensus 84 FrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dk--rqvs~--eE-----g~~ 153 (221)
T KOG0094|consen 84 FRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDK--RQVSI--EE-----GER 153 (221)
T ss_pred HhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccch--hhhhH--HH-----HHH
Confidence 77777888999999999999995555444 455555554444421 256788999998865 22211 10 111
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.....+.-|. ..|++.+.++..|+.+|...++.
T Consensus 154 kAkel~a~f~------etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 154 KAKELNAEFI------ETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred HHHHhCcEEE------EecccCCCCHHHHHHHHHHhccC
Confidence 1223333222 56888899999999999888765
No 181
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.64 E-value=2.3e-14 Score=116.33 Aligned_cols=87 Identities=22% Similarity=0.230 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++|+|||||+|+|+|.... .+. ....|..... ....+.+..+.+|||||+.+....... +...+...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~~-~~~tT~~~~~-g~~~~~~~~i~l~DtpG~~~~~~~~~~----~~~~~l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VAA-YEFTTLTCVP-GVLEYKGAKIQLLDLPGIIEGAADGKG----RGRQVIAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-ccC-CCCccccceE-EEEEECCeEEEEEECCCcccccccchh----HHHHHHHh
Confidence 6899999999999999999987642 221 1223333322 223367888999999998754321111 22222334
Q ss_pred CCCccEEEEEEeCC
Q 023779 101 KDGIHAFLVVFSVT 114 (277)
Q Consensus 101 ~~~~~~~l~v~d~~ 114 (277)
++.+|++++|+|++
T Consensus 75 ~~~ad~il~V~D~t 88 (233)
T cd01896 75 ARTADLILMVLDAT 88 (233)
T ss_pred hccCCEEEEEecCC
Confidence 67889999999987
No 182
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.64 E-value=8.9e-15 Score=113.16 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|.+|+|||||++++++....... .+|...........++ ..+.+|||||.... ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence 57999999999999999999976642221 1122111111111333 45789999996542 2222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...+..++++++|++++.+-+... ..+...+..... ....|+++++||.|.........++ ...+....
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~ 136 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQW 136 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccccCccCHHH---------HHHHHHHc
Confidence 334567799999999983322222 233344444332 1234999999999975431011111 12222333
Q ss_pred C-CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+ ..++ ..||+.+.++.++++.+...
T Consensus 137 ~~~~~~------~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 137 GNVPFY------ETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CCceEE------EeeCCCCCCHHHHHHHHHHH
Confidence 3 2222 46888889999999988754
No 183
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.64 E-value=4.2e-15 Score=115.56 Aligned_cols=161 Identities=19% Similarity=0.135 Sum_probs=92.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
++|+++|++|+|||||++++++..+... ..+|....+......++ ..+.+|||||... +....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE----YVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hcccc
Confidence 4799999999999999999986554221 12222111111122333 3578999999542 22222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC----CchHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC----PKPLKE 171 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~----~~~~~~ 171 (277)
..++.++|++++|+|++.+-+... ..++..+.... .+ .|+++|+||+|..... ..+..+..... ......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-PK--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 335678999999999984433322 23444454432 22 4999999999976431 11111111100 001223
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
+....+. .++ ++|++.+.++.++++.+.
T Consensus 142 ~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYI------ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence 3333333 333 568888899999998764
No 184
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.64 E-value=6.4e-13 Score=110.56 Aligned_cols=150 Identities=25% Similarity=0.394 Sum_probs=99.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccc----c--CCCCCcceeeEEEEEee-eCCc--eEEEEeCCCCCCCCCCc---
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA----S--AGSSGVTKTCEMKTTVL-KDGQ--VVNVIDTPGLFDLSAGS--- 86 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~----~--~~~~~~t~~~~~~~~~~-~~~~--~~~liDtpG~~~~~~~~--- 86 (277)
..+|+++|++|.|||||+|+|++...... + ......+.......... .++. .++++|||||+|.....
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~w 102 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCW 102 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccH
Confidence 47999999999999999999998743221 0 11122333343333222 2232 48899999999876432
Q ss_pred h----HHHHHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 87 E----FVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 87 ~----~~~~~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
+ .+..++..++.. ...++|++||.+..+ ++++..|...++.+.+.+ ++|=|+.|.|.+.
T Consensus 103 e~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~KaD~lT 176 (373)
T COG5019 103 EPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAKADTLT 176 (373)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------CeeeeeeccccCC
Confidence 1 233344444421 125689999999977 688888888777766642 8999999999998
Q ss_pred cccccHHHHhcccCCchHHHHHhhcCCeEE
Q 023779 152 DHEKTLEDFLGHECPKPLKEILQLCDNRCV 181 (277)
Q Consensus 152 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 181 (277)
. ..+..+... +.+.+..+..+++
T Consensus 177 ~--~El~~~K~~-----I~~~i~~~nI~vf 199 (373)
T COG5019 177 D--DELAEFKER-----IREDLEQYNIPVF 199 (373)
T ss_pred H--HHHHHHHHH-----HHHHHHHhCCcee
Confidence 8 777776665 6666665554444
No 185
>PRK12735 elongation factor Tu; Reviewed
Probab=99.64 E-value=1.5e-14 Score=126.53 Aligned_cols=166 Identities=17% Similarity=0.217 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+.++|+++|+.++|||||+++|++... +. . .....+.|......... .++..+.|+||||+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~-- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHA-- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHH--
Confidence 4559999999999999999999986210 00 0 01123455554444333 466789999999953
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EEEEeCCCCCCcccccHHHHh
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~nk~D~~~~~~~~l~~~l 161 (277)
++...+......+|++++|+|+..+....+...+..+.. .+. |. ++++||+|.... ..+.+.+
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~~ 150 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLELV 150 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHHH
Confidence 333444444567899999999986566666666666554 343 54 467999998644 2332222
Q ss_pred cccCCchHHHHHhhcCC---eEEEEeCCCcccccCh----------hHHHHHHHHHHHHHh
Q 023779 162 GHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGT----------EQVRQLLSLVNSVIV 209 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~----------~~~~~L~~~i~~~~~ 209 (277)
.. .+..++..++. .+..+ +.|+..+ .++..|++.|...++
T Consensus 151 ~~----ei~~~l~~~~~~~~~~~ii----~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 151 EM----EVRELLSKYDFPGDDTPII----RGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHHcCCCcCceeEE----ecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 21 15556655542 12222 2233332 256788888887654
No 186
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.63 E-value=6.9e-15 Score=116.56 Aligned_cols=151 Identities=15% Similarity=0.048 Sum_probs=92.8
Q ss_pred EcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEE-eeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779 25 LGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT-VLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (277)
Q Consensus 25 vG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (277)
+|..|||||||+++++...+. .. ..+|........ ...+ ...+.||||||.. .+......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e-----------~~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE-----------KFGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCch-----------hhhhhhHHHh
Confidence 699999999999999865432 11 122322222111 1123 3468899999943 3334444567
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (277)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (277)
.++|++++|+|++.+.+... ..++..+.... .. .|++||+||+|.... ....+ ...+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~~--~piilvgNK~Dl~~~--~v~~~---------~~~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-EN--IPIVLCGNKVDVKDR--KVKAK---------SITFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CC--CCEEEEEECcccccc--cCCHH---------HHHHHHHcCCEE
Confidence 88999999999995444333 24455555543 23 399999999996433 11111 112222323333
Q ss_pred EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+ ++||+.+.++.+++.++.+.+..
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 56888899999999999887654
No 187
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.63 E-value=2e-14 Score=109.35 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=86.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||+|.|++... .... ..+.+........ ..++ ..+.+|||||..+. ....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~D~~G~~~~-----------~~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVI-EEDGKTYKFNLLDTAGQEDY-----------RAIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEE-EECCEEEEEEEEECCCcccc-----------hHHH
Confidence 6899999999999999999998773 3221 1222222222222 2455 66889999995432 1111
Q ss_pred hhcCCCccEEEEEEeCCCC-CC--HHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 98 GMAKDGIHAFLVVFSVTNR-FS--QEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
......++.+++++|.... .+ .........+...... ..|+++++||+|.... . +... ....+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~~--------~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKTH--------VAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhHH--------HHHHHh
Confidence 1122344666666666522 11 1112333334333322 3499999999998754 2 1111 222223
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
..+... ..+.|+..+.++.++++.|.
T Consensus 135 ~~~~~~-----~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEP-----IIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCc-----eEEeecCCCCCHHHHHHHhh
Confidence 222211 22557777889999988764
No 188
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.63 E-value=5.6e-15 Score=106.42 Aligned_cols=158 Identities=17% Similarity=0.217 Sum_probs=105.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+.+|+|++|+|||||+-.+....+ ++.......++..+.... .+|. .+.||||.| .+.+...+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtF--s~sYitTiGvDfkirTv~-i~G~~VkLqIwDtAG-----------qErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTF--SGSYITTIGVDFKIRTVD-INGDRVKLQIWDTAG-----------QERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhccc--ccceEEEeeeeEEEEEee-cCCcEEEEEEeeccc-----------HHHHHHHH
Confidence 4578999999999999998876554 232222222333333222 3343 488999999 45677777
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+++++|++++|+|+++.-+... ++|++.++..+.. .|-++|.||.|..+. ..+... ..+.+....
T Consensus 75 styyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R--rvV~t~-------dAr~~A~~m 142 (198)
T KOG0079|consen 75 STYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER--RVVDTE-------DARAFALQM 142 (198)
T ss_pred HHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc--eeeehH-------HHHHHHHhc
Confidence 788999999999999995444444 6777777776653 389999999997765 222211 133343333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+...+ +.|++...+++..+..|.+.+-
T Consensus 143 gie~F------ETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 143 GIELF------ETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred Cchhe------ehhhhhcccchHHHHHHHHHHH
Confidence 43333 5688888999999988877653
No 189
>CHL00071 tufA elongation factor Tu
Probab=99.62 E-value=2.2e-14 Score=125.98 Aligned_cols=137 Identities=17% Similarity=0.245 Sum_probs=89.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc--------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+.++|+++|++++|||||+|+|++......+ ....+.|......... .++..+.|+||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~-- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHA-- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChH--
Confidence 45599999999999999999999964211000 0113444444333332 466789999999943
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l 161 (277)
.+...+......+|++++|+|+..++...+...+..+... +. | +++++||+|.... ..+.+.+
T Consensus 87 ---------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~----~~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV----PNIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred ---------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEEccCCCCH--HHHHHHH
Confidence 2333333344577999999999877777777777776653 43 5 7789999998754 3332322
Q ss_pred -cccCCchHHHHHhhcC
Q 023779 162 -GHECPKPLKEILQLCD 177 (277)
Q Consensus 162 -~~~~~~~~~~~~~~~~ 177 (277)
.+ +..++..++
T Consensus 151 ~~~-----l~~~l~~~~ 162 (409)
T CHL00071 151 ELE-----VRELLSKYD 162 (409)
T ss_pred HHH-----HHHHHHHhC
Confidence 23 666666554
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=9e-15 Score=129.33 Aligned_cols=160 Identities=18% Similarity=0.187 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccC---------------CCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA---------------GSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~---------------~~~~~t~~~~~~~~~~~~~ 68 (277)
+.++|+++|+.++|||||+++|+.....- .|. -..+.|.......+. +++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TDK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cCC
Confidence 45899999999999999999998432110 010 024566666555444 577
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
..+.||||||..+ +...+......+|++++|+|+.. .+...+...+.++.. ++. .|++|++||
T Consensus 84 ~~i~liDtpG~~~-----------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHRD-----------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAINK 148 (425)
T ss_pred eEEEEEECCCccc-----------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEEEc
Confidence 8899999999643 11222223457899999999985 555555555555543 342 279999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 199 (277)
+|........+...... +..++...+..... ....+.|+..+.++.+
T Consensus 149 ~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~~-~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPDD-IPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHH-----HHHHHHhhCCCcCc-ceEEEeecccCCCccc
Confidence 99764211233333333 55555554421000 0112346666666654
No 191
>PRK12736 elongation factor Tu; Reviewed
Probab=99.62 E-value=3.5e-14 Score=124.02 Aligned_cols=164 Identities=16% Similarity=0.214 Sum_probs=103.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+.++|+++|+.++|||||+++|++..... ......+.|......... .++..+.+|||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~-- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHA-- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHH--
Confidence 345899999999999999999998632100 000123455555444332 456789999999943
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l 161 (277)
++..........+|++++|+|+..+....+...+.++... +. | ++|++||+|.... ..+.+.+
T Consensus 87 ---------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~----~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 87 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV----PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CEEEEEEEecCCcch--HHHHHHH
Confidence 2223333334577999999999877777777777776654 43 5 6789999998644 3333322
Q ss_pred cccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh--------hHHHHHHHHHHHHHh
Q 023779 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~--------~~~~~L~~~i~~~~~ 209 (277)
.. .+..++...+. .++. .|+..+ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 15566655542 2333 333332 357888888888765
No 192
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.61 E-value=4e-14 Score=113.99 Aligned_cols=162 Identities=15% Similarity=0.042 Sum_probs=93.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE--Ee-eeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TV-LKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
+.....+|+++|++|||||||++.++........ .+|....... .. ......+.+|||||...
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~---------- 70 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEK---------- 70 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchh----------
Confidence 3445589999999999999999765433322111 1222221211 11 11234688999999432
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
+......++...+++++|+|++.+.+... ..++..+.... .. .|+++++||+|.... ..... ..
T Consensus 71 -~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~~i~lv~nK~Dl~~~--~~~~~---------~~ 135 (215)
T PTZ00132 71 -FGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-EN--IPIVLVGNKVDVKDR--QVKAR---------QI 135 (215)
T ss_pred -hhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CC--CCEEEEEECccCccc--cCCHH---------HH
Confidence 12222334567799999999984443333 23334444332 22 389999999996533 11111 11
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.+....+..++ +.|++.+.++++++..|.+.+..+
T Consensus 136 ~~~~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 136 TFHRKKNLQYY------DISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhc
Confidence 22233333333 457777888999998888777553
No 193
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.4e-14 Score=103.35 Aligned_cols=156 Identities=18% Similarity=0.253 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|..|+|||.|+..++..- |+.|.+.. ..+..-...+. .++. .+.+|||.| .+++....
T Consensus 8 fkivlvgnagvgktclvrrftqgl-fppgqgat-igvdfmiktve-v~gekiklqiwdtag-----------qerfrsit 73 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGAT-IGVDFMIKTVE-VNGEKIKLQIWDTAG-----------QERFRSIT 73 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccC-CCCCCCce-eeeeEEEEEEE-ECCeEEEEEEeeccc-----------hHHHHHHH
Confidence 689999999999999999988554 33332211 11222222222 3443 588999999 34566666
Q ss_pred hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+|+.+|++++|+|++ ++--.--..|+..+.+.....+ -.|+|.||.|.... ..+...+.. ++-+.
T Consensus 74 qsyyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~qige-------efs~~- 141 (213)
T KOG0095|consen 74 QSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQIGE-------EFSEA- 141 (213)
T ss_pred HHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHHHHH-------HHHHh-
Confidence 67889999999999998 2211223456666766654433 46788999997755 333322221 11111
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
...|+. +.|++...+++.|+..+.-
T Consensus 142 qdmyfl-----etsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 142 QDMYFL-----ETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hhhhhh-----hhcccchhhHHHHHHHHHH
Confidence 233443 5678888999998876644
No 194
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=5.1e-15 Score=115.21 Aligned_cols=161 Identities=15% Similarity=0.127 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|..||||||+++.|....... ..+|.......+. +.+..+.+||.+|-. .+...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~-~~~~~~~~~d~gG~~-----------~~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIK-YKGYSLTIWDLGGQE-----------SFRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEE-ETTEEEEEEEESSSG-----------GGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceee-eCcEEEEEEeccccc-----------ccccc
Confidence 456899999999999999999998654322 2334444444433 678899999999932 23344
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|+++||+|.+.. .... ...+.+..++... ...|++|+.||.|.... ...+++... .. +..+ .
T Consensus 75 w~~y~~~~~~iIfVvDssd~-~~l~-e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~-l~--l~~l-~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDP-ERLQ-EAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEY-LG--LEKL-K 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGG-GGHH-HHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHH-TT--GGGT-T
T ss_pred ceeeccccceeEEEEecccc-eeec-ccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhh-hh--hhhc-c
Confidence 45567889999999999822 1111 1222333333321 22499999999997654 333332221 00 1111 1
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...++..+ .+++..+.|+.+.+++|.+.
T Consensus 147 -~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 -NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp -SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred -cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12344443 45777889999999998764
No 195
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=2.3e-14 Score=112.84 Aligned_cols=165 Identities=17% Similarity=0.130 Sum_probs=94.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+|+|++|+|||||++.++........ ..|....+.......+ ..+.+|||||..... ...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------~~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRVDGKPVQLALWDTAGQEEYE-----------RLR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEECCEEEEEEEEECCCChhcc-----------ccc
Confidence 58999999999999999999854432211 1222222221112333 347899999964321 111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC--chHHHHH
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP--KPLKEIL 173 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~--~~~~~~~ 173 (277)
...+..+|+++++++++..-+... ..++..+..... + .|+++|+||+|..... ...+........ .....+.
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRVA 142 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHHH
Confidence 123567899999999983322222 235555555433 2 4999999999964320 111110000000 0122233
Q ss_pred hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+. .++ .+|++.+.+++++++.+.+...
T Consensus 143 ~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 143 KEIGAKKYM------ECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred HHhCCcEEE------EccCCCCCCHHHHHHHHHHHHh
Confidence 33332 232 5688899999999999987653
No 196
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=2.7e-14 Score=104.39 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
..++|++||.+|+|||||+-+++...+ +.. .+....++..+.... .++ ..+.+|||.| ++++..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~f-d~~-~~~tIGvDFkvk~m~-vdg~~~KlaiWDTAG-----------qErFRt 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTF-DDL-HPTTIGVDFKVKVMQ-VDGKRLKLAIWDTAG-----------QERFRT 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhccc-Ccc-CCceeeeeEEEEEEE-EcCceEEEEEEeccc-----------hHhhhc
Confidence 458999999999999999999885543 322 122223334333333 343 4588999999 446677
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
....+|+++.++++|+|++.+-+.... .|++.+... ..+..--.|+|.||+|..
T Consensus 76 LTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y-stn~diikmlVgNKiDke 130 (209)
T KOG0080|consen 76 LTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY-STNPDIIKMLVGNKIDKE 130 (209)
T ss_pred cCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh-cCCccHhHhhhcccccch
Confidence 777889999999999999954443332 333333332 222212356889999965
No 197
>PLN03127 Elongation factor Tu; Provisional
Probab=99.60 E-value=2.5e-14 Score=126.16 Aligned_cols=169 Identities=15% Similarity=0.187 Sum_probs=102.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCC------CC-cc---c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGR------KA-FK---A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~------~~-~~---~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
...+.++|+++|+.++|||||+++|++. .. +. . .....+.|......... .++.++.++||||+.
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHA 135 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCcc
Confidence 3456689999999999999999999732 10 00 0 01114556665555443 466789999999975
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~ 159 (277)
+ ....+.. ....+|++++|+|+..+....+...+.++... +. | +++++||+|.... ..+.+
T Consensus 136 ~-------f~~~~~~----g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~ 197 (447)
T PLN03127 136 D-------YVKNMIT----GAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLE 197 (447)
T ss_pred c-------hHHHHHH----HHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHH
Confidence 4 1122222 22357999999999867777777777777654 43 5 5788999998754 33333
Q ss_pred HhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh-------hHHHHHHHHHHHHHh
Q 023779 160 FLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT-------EQVRQLLSLVNSVIV 209 (277)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~-------~~~~~L~~~i~~~~~ 209 (277)
.+.. .+.+++..++. .++..+. .++..+ ..+..|++.+...++
T Consensus 198 ~i~~----~i~~~l~~~~~~~~~vpiip~Sa---~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 198 LVEM----ELRELLSFYKFPGDEIPIIRGSA---LSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHHH----HHHHHHHHhCCCCCcceEEEecc---ceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3321 15555554332 2222111 111111 347788888887765
No 198
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.60 E-value=2.7e-14 Score=109.25 Aligned_cols=152 Identities=19% Similarity=0.137 Sum_probs=90.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|||||||++.++...+... ..+ +...... ....++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~-~i~~~~~~~~l~i~D~~g~~~------------~--- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKK-EVLVDGQSHLLLIRDEGGAPD------------A--- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEE-EEEECCEEEEEEEEECCCCCc------------h---
Confidence 3799999999999999998876543221 111 1111111 223455 3488999999642 0
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++.++|++++|+|++.+-+... ..++..+..... ....|+++|.||.|........+.... ...+....
T Consensus 61 -~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~~~~~v~~~~-------~~~~~~~~ 131 (158)
T cd04103 61 -QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAISESNPRVIDDAR-------ARQLCADM 131 (158)
T ss_pred -hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhhhcCCcccCHHH-------HHHHHHHh
Confidence 12356799999999995544444 345555555432 122499999999986421001111110 12233332
Q ss_pred C-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
+ ..++ ++||+.+.++++++..+.+
T Consensus 132 ~~~~~~------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 132 KRCSYY------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCCcEE------EEecCCCCCHHHHHHHHHh
Confidence 2 2232 5688899999999988764
No 199
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.60 E-value=8.7e-15 Score=112.39 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+++|+.|||||||++.+.+..+........+ ........ ..++. .+.+||++|... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~-~~~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEV-SIDGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEE-EETTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--cccccccc-ccccccccccccccccccc-----------cccccc
Confidence 689999999999999999997664322211111 12222222 23343 488999999432 112222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..+..+|++++|+|++.+-+... ..++..+......+ .|++||.||.|.........++ .+.+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~---------~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEE---------AQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHH---------HHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhhH---------HHHHHHHhC
Confidence 34567899999999983322222 35555556555423 3999999999976531011111 344555656
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..|+ ..|++.+.++.+++..+.+.+
T Consensus 136 ~~~~------e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYF------EVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEE------EEBTTTTTTHHHHHHHHHHHH
T ss_pred CEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 5555 456677788999888776654
No 200
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.60 E-value=2.3e-14 Score=118.86 Aligned_cols=154 Identities=23% Similarity=0.331 Sum_probs=89.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEEee-eCC--ceEEEEeCCCCCCCCCCch---
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGSE--- 87 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~~--- 87 (277)
++|+|+|.+|+|||||||+|++......... ....+.......... .++ ..++|+|||||++......
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~~ 84 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCWE 84 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhhH
Confidence 7899999999999999999998776444210 111222222222221 223 3588999999997654321
Q ss_pred ----HHHHHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 88 ----FVGKEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 88 ----~~~~~~~~~~~~---------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
.+..++...+.. ...++|++||+++.+ .++...|...++.|... + |+|-|+.|.|.+..
T Consensus 85 ~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~----v--NvIPvIaKaD~lt~- 157 (281)
T PF00735_consen 85 PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR----V--NVIPVIAKADTLTP- 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT----S--EEEEEESTGGGS-H-
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc----c--cEEeEEecccccCH-
Confidence 122233333321 124689999999987 57888888777766653 2 89999999999988
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
..+..+... +..-+...+.+++.|...
T Consensus 158 -~el~~~k~~-----i~~~l~~~~I~~f~f~~~ 184 (281)
T PF00735_consen 158 -EELQAFKQR-----IREDLEENNIKIFDFPED 184 (281)
T ss_dssp -HHHHHHHHH-----HHHHHHHTT--S------
T ss_pred -HHHHHHHHH-----HHHHHHHcCceeeccccc
Confidence 778777766 777777777776665544
No 201
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=3.2e-14 Score=132.52 Aligned_cols=119 Identities=23% Similarity=0.296 Sum_probs=84.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCCcccc-C-------------CCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSIL---GRKAFKAS-A-------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~---~~~~~~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (277)
..+.++|+|+|+.++|||||+|+|+ |... ..+ . ...+.|......... +.+..+.|+||||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~-~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG 84 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNH-KIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPG 84 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCcc-ccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCC
Confidence 4456899999999999999999996 3211 010 0 123455555444443 7889999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+.++ ..++..++ ..+|++++|+|+..+.+..+...+..+... +. |+++++||+|....
T Consensus 85 ~~~f-------~~ev~~al----~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~~----p~iv~vNK~D~~~~ 142 (693)
T PRK00007 85 HVDF-------TIEVERSL----RVLDGAVAVFDAVGGVEPQSETVWRQADKY-KV----PRIAFVNKMDRTGA 142 (693)
T ss_pred cHHH-------HHHHHHHH----HHcCEEEEEEECCCCcchhhHHHHHHHHHc-CC----CEEEEEECCCCCCC
Confidence 7541 12334443 445999999999878888888888877764 33 78999999997754
No 202
>PRK12739 elongation factor G; Reviewed
Probab=99.60 E-value=5.5e-14 Score=130.99 Aligned_cols=128 Identities=22% Similarity=0.279 Sum_probs=87.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF--KASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
..+.++|+|+|+.++|||||+++|+..... ..+. ...+.|......... +++..+.+|||||+
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~ 83 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGH 83 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCH
Confidence 345689999999999999999999732110 0000 123455555555444 78899999999996
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~ 159 (277)
.+ ...+... +...+|++++|+|+..+....+...+..+... +. |+++++||+|.... .+..
T Consensus 84 ~~-------f~~e~~~----al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~~----p~iv~iNK~D~~~~---~~~~ 144 (691)
T PRK12739 84 VD-------FTIEVER----SLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-GV----PRIVFVNKMDRIGA---DFFR 144 (691)
T ss_pred HH-------HHHHHHH----HHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-CC----CEEEEEECCCCCCC---CHHH
Confidence 53 1223333 34455999999999877777777777776653 32 89999999998754 3444
Q ss_pred Hhcc
Q 023779 160 FLGH 163 (277)
Q Consensus 160 ~l~~ 163 (277)
.+..
T Consensus 145 ~~~~ 148 (691)
T PRK12739 145 SVEQ 148 (691)
T ss_pred HHHH
Confidence 4444
No 203
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.7e-14 Score=109.36 Aligned_cols=119 Identities=20% Similarity=0.202 Sum_probs=83.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+.-.+|+++|++|+|||-|+..++...+... +..+.-+........ .+++ ...||||.| ++++.
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~--SksTIGvef~t~t~~-vd~k~vkaqIWDTAG-----------QERyr 77 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLE--SKSTIGVEFATRTVN-VDGKTVKAQIWDTAG-----------QERYR 77 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcc--cccceeEEEEeecee-ecCcEEEEeeecccc-----------hhhhc
Confidence 4457899999999999999999987665222 222222222222222 3444 468999999 33455
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
....++|+++.+.++|+|++.+.+... .+|+..|+.+..+.+ ++|+|.||+|+..
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 555677899999999999985555544 577777777765554 8999999999654
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.59 E-value=4.6e-14 Score=128.37 Aligned_cols=167 Identities=14% Similarity=0.247 Sum_probs=102.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-Cc-ccc------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRK-AF-KAS------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~-~~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (277)
++|+++|+.++|||||+++|+... .+ ..+ ....+.|.......+. |.+..+.||||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHH---
Confidence 679999999999999999998421 11 111 0112455555545444 78899999999996542
Q ss_pred chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccC
Q 023779 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHEC 165 (277)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~ 165 (277)
..++.. ++..+|++++|+|+..+.......++..+... +. |++|++||+|.... .....+..
T Consensus 78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~-~i----p~IVviNKiD~~~a---~~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL-GL----KPIVVINKIDRPSA---RPDEVVDE-- 139 (594)
T ss_pred ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC-CC----CEEEEEECCCCCCc---CHHHHHHH--
Confidence 223333 34566999999999866666667777766653 32 88999999997533 23333333
Q ss_pred CchHHHHHhhcCCeEEEE-eCCCcccccCh----------hHHHHHHHHHHHHHhhc
Q 023779 166 PKPLKEILQLCDNRCVLF-DNKTKDEAKGT----------EQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~----------~~~~~L~~~i~~~~~~~ 211 (277)
+..++..++...-.+ ......|+..+ .++..|++.|...++..
T Consensus 140 ---i~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ---HHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 333333222110000 01112344444 36889999988887653
No 205
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.59 E-value=7.2e-14 Score=110.48 Aligned_cols=161 Identities=14% Similarity=0.039 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCcHHHHHH-HHhCCCCcccc--CCCCCccee---eEEEE-------EeeeCC--ceEEEEeCCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGN-SILGRKAFKAS--AGSSGVTKT---CEMKT-------TVLKDG--QVVNVIDTPGLFDLSA 84 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin-~l~~~~~~~~~--~~~~~~t~~---~~~~~-------~~~~~~--~~~~liDtpG~~~~~~ 84 (277)
.+|+++|..|||||||+. .+.+..+ ..+ .....+|.. ..... ....++ ..+.||||+|...
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~-~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--- 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTL-TQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--- 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCc-ccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh---
Confidence 789999999999999996 5544322 111 111122321 10000 001233 4588999999542
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-----
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL----- 157 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l----- 157 (277)
.+ ...+++++|++++|+|++.+.+.... .++..+.... .+ .|+++|.||+|.........
T Consensus 79 -------~~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~--~piilvgNK~DL~~~~~~~~~~~~~ 145 (195)
T cd01873 79 -------KD---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PR--VPVILVGCKLDLRYADLDEVNRARR 145 (195)
T ss_pred -------hh---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CC--CCEEEEEEchhccccccchhhhccc
Confidence 11 12367899999999999855444433 3555565543 23 39999999999643100000
Q ss_pred --------HHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 158 --------EDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 158 --------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
...+. ....+.+....+..|+ ++||+.+.+++++++.+.+
T Consensus 146 ~~~~~~~~~~~V~---~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 146 PLARPIKNADILP---PETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred ccccccccCCccC---HHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 00000 1123445555555443 6788899999999988765
No 206
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.59 E-value=2.9e-14 Score=125.04 Aligned_cols=167 Identities=14% Similarity=0.149 Sum_probs=97.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEe--------------e-----------eCCceE
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV--------------L-----------KDGQVV 71 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 71 (277)
+..+|+++|+.++|||||+++|++....... ....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 3489999999999999999999874321100 1111222222211100 0 024679
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
.+|||||.. ++...+......+|++++|+|++.+. .......+..+.. ++. +|+++++||+|..
T Consensus 83 ~liDtPGh~-----------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHE-----------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHH-----------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCC---CeEEEEEEccccC
Confidence 999999943 22223333334679999999998554 4445555555533 332 2799999999987
Q ss_pred CcccccHHHHhcccCCchHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 151 EDHEKTLEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ......... +..++.... ..+ ...+.|+..+.+++.|++.|...++.
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~----~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENA----PIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCC----eEEEEECCCCCChHHHHHHHHHhCCC
Confidence 54 222222222 333333211 011 11255788889999999999987653
No 207
>PRK00049 elongation factor Tu; Reviewed
Probab=99.58 E-value=8.3e-14 Score=121.70 Aligned_cols=169 Identities=18% Similarity=0.177 Sum_probs=102.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+.++|+++|+.++|||||+++|++...... .....+.|......... .++..+.++||||+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~-- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHA-- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHH--
Confidence 4558999999999999999999986311000 00123445554433332 466789999999953
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE-EEEeCCCCCCcccccH-HHH
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI-VVFTGGDDLEDHEKTL-EDF 160 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i-vv~nk~D~~~~~~~~l-~~~ 160 (277)
++...+......+|++++|+|+..+....+...+..+... +. |.+ +++||+|.... ... +..
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g~----p~iiVvvNK~D~~~~--~~~~~~~ 150 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFLNKCDMVDD--EELLELV 150 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-CC----CEEEEEEeecCCcch--HHHHHHH
Confidence 3444444455788999999999867777777777776653 43 665 68999998743 222 222
Q ss_pred hcccCCchHHHHHhhcCC-----eEEEEeCCCcc--c--ccChhHHHHHHHHHHHHHh
Q 023779 161 LGHECPKPLKEILQLCDN-----RCVLFDNKTKD--E--AKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 161 l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--s--~~~~~~~~~L~~~i~~~~~ 209 (277)
... +..++..++. .++........ + ..-..++..|++.|...++
T Consensus 151 ~~~-----i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 151 EME-----VRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HHH-----HHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 223 5566655442 23332221100 0 0001246788888887654
No 208
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=1.6e-13 Score=103.01 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=101.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+++++|++|||||.|+...+...+.+... .+..+....... ..+++ .+.+|||.|.. .+...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd--~TiGvefg~r~~-~id~k~IKlqiwDtaGqe-----------~frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--LTIGVEFGARMV-TIDGKQIKLQIWDTAGQE-----------SFRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc--ceeeeeeceeEE-EEcCceEEEEEEecCCcH-----------HHHHH
Confidence 3889999999999999999999776533222 222223333322 24544 48899999933 45566
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+|+++.+.|+|+|++.+-+..- ..||.-++....++. -++|+.||+|.... ..+... .-+.+.+.
T Consensus 72 ~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~r--R~Vs~E-------EGeaFA~e 140 (216)
T KOG0098|consen 72 TRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEAR--REVSKE-------EGEAFARE 140 (216)
T ss_pred HHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhcc--ccccHH-------HHHHHHHH
Confidence 6678999999999999994433332 355566666543433 67788999997755 222111 12233333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+.-.+. +.|++...++++.+.-+...+
T Consensus 141 -hgLifm-----ETSakt~~~VEEaF~nta~~I 167 (216)
T KOG0098|consen 141 -HGLIFM-----ETSAKTAENVEEAFINTAKEI 167 (216)
T ss_pred -cCceee-----hhhhhhhhhHHHHHHHHHHHH
Confidence 222222 668888999998887665544
No 209
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.57 E-value=5.2e-14 Score=127.50 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=74.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-----------------CCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~liDtpG~~~ 81 (277)
...|+++|++++|||||+|+|++..+.... +.+.|.+......... ....+.||||||...
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e--~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKRE--AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccccc--CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 367999999999999999999987653221 1222222222111100 012388999999543
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
+......++..+|++++|+|++.++...+...+.++... + .|+++++||+|...
T Consensus 82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~-~----vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY-K----TPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc-C----CCEEEEEECCCccc
Confidence 222223345678999999999866666666666665542 2 38999999999763
No 210
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.57 E-value=1e-13 Score=126.40 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=99.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC------ccccC-------CCCCcceeeEEEEEeee--CC--ceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKASA-------GSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~~--~~~~liDtpG~~~ 81 (277)
.++|+++|+.++|||||+++|+.... +.... ...+.|........... ++ ..+.||||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 47899999999999999999985321 00000 01244444333333211 22 5689999999765
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l 161 (277)
+ ...+.. ++..+|++++|+|++.+.+..+...+..+.. . + .|+++|+||+|.... ......
T Consensus 83 F-------~~~v~~----~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-~--~--ipiIiViNKiDl~~~---~~~~~~ 143 (595)
T TIGR01393 83 F-------SYEVSR----SLAACEGALLLVDAAQGIEAQTLANVYLALE-N--D--LEIIPVINKIDLPSA---DPERVK 143 (595)
T ss_pred H-------HHHHHH----HHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-c--C--CCEEEEEECcCCCcc---CHHHHH
Confidence 2 122333 3456699999999986666666544443332 1 2 289999999996533 222222
Q ss_pred cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.. +...+ +... ......|++.+.|+.+|++.|...++..
T Consensus 144 ~e-----l~~~l---g~~~---~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 144 KE-----IEEVI---GLDA---SEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HH-----HHHHh---CCCc---ceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 22 33222 2110 0123568889999999999998887653
No 211
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.56 E-value=1.2e-13 Score=103.93 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=84.4
Q ss_pred EEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 24 LLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
++|++|+|||||+|+|++........ ..|. ........ ..+..+.+|||||.... .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 58999999999999999876521211 1121 11111111 12567899999996541 1111334
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHH--HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAV--HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
.+.+|++++|+|++...+..+...+ ..+... .....|+++++||+|.... ....... . ..........
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~--~~~~~~~-~-----~~~~~~~~~~ 135 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEE--RVVSEEE-L-----AEQLAKELGV 135 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh--ccCCCcEEEEEeccccccc--cchHHHH-H-----HHHHHhhcCC
Confidence 5678999999999843333333222 111111 1223599999999997755 2222111 0 1112222333
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
.++. .|+..+.++.+++++|.
T Consensus 136 ~~~~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFE------TSAKTGENVEELFEELA 156 (157)
T ss_pred cEEE------EecCCCCChHHHHHHHh
Confidence 4443 35555677888887764
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.56 E-value=1e-13 Score=122.55 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC--cc------------cc---------------CCCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA--FK------------AS---------------AGSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~~------------~~---------------~~~~~~t~~~~~~~~~~~~~ 68 (277)
+.++|+++|+.++|||||+++|+...- .. .| ....+.|.......+. +++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~-~~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE-TDK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc-cCC
Confidence 458999999999999999999984211 00 00 0112455555554443 567
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC---CCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR---FSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
..+.||||||.. .+...+...+..+|++++|+|++.+ ........+..+ ..++. .|++|++|
T Consensus 85 ~~i~iiDtpGh~-----------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVviN 149 (426)
T TIGR00483 85 YEVTIVDCPGHR-----------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVAIN 149 (426)
T ss_pred eEEEEEECCCHH-----------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEEEE
Confidence 789999999943 2333333345678999999999854 222223322333 23342 37999999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHH
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 199 (277)
|+|........+...... ++.++...+.... .....+.|++.+.++.+
T Consensus 150 K~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred ChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 999864211334444443 6666665542100 00112456666666654
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.56 E-value=8.5e-14 Score=122.05 Aligned_cols=169 Identities=12% Similarity=0.143 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEee-----------------e---C-----Cce
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-----------------K---D-----GQV 70 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-----------------~---~-----~~~ 70 (277)
.+..+|+++|+.++|||||+.+|++..... ......+.|.......... . . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 345899999999999999999997642110 0111223343332211000 0 0 257
Q ss_pred EEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779 71 VNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (277)
Q Consensus 71 ~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~ 149 (277)
+.||||||.. .+...+......+|++++|+|+..+. .......+..+.. .+. .|+++|+||+|.
T Consensus 87 i~liDtPG~~-----------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHE-----------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEeecc
Confidence 8999999943 23333333345679999999998554 4555555555543 232 278999999998
Q ss_pred CCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
... ......... +..++....... ....+.|+..+.+++.|++.|...++.
T Consensus 152 ~~~--~~~~~~~~~-----i~~~l~~~~~~~---~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 152 VSK--ERALENYEQ-----IKEFVKGTVAEN---APIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccc--hhHHHHHHH-----HHHHhccccCCC---CeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 754 232222222 333332211000 011256888889999999999887653
No 214
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=4.8e-14 Score=125.51 Aligned_cols=141 Identities=11% Similarity=0.120 Sum_probs=87.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCC-----------------CCCcceeeEEEEEe
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAG-----------------SSGVTKTCEMKTTV 64 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~-----------------~~~~t~~~~~~~~~ 64 (277)
....++|+++|+.++|||||+++|+...-.- .|.. ..+.|.........
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 4566999999999999999999997432100 1110 12445555544443
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
+++..+.||||||+.+ +..........+|++++|+|+..++...+...+..+.. .+. +|++|++
T Consensus 104 -~~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~---~~iIvvv 167 (474)
T PRK05124 104 -TEKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI---KHLVVAV 167 (474)
T ss_pred -cCCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---CceEEEE
Confidence 5678899999999432 22222223467799999999986665555554444443 342 3789999
Q ss_pred eCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
||+|........+...... +..++...+
T Consensus 168 NKiD~~~~~~~~~~~i~~~-----l~~~~~~~~ 195 (474)
T PRK05124 168 NKMDLVDYSEEVFERIRED-----YLTFAEQLP 195 (474)
T ss_pred EeeccccchhHHHHHHHHH-----HHHHHHhcC
Confidence 9999874311334444433 545444433
No 215
>PRK10218 GTP-binding protein; Provisional
Probab=99.56 E-value=1.9e-13 Score=124.23 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=101.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-Cccc-c------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKA-S------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (277)
..++|+++|+.++|||||+++|+... .+.. + ....+.|.......+. +++..+.+|||||..++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhH
Confidence 34899999999999999999998522 1111 1 0122344444444333 678899999999976531
Q ss_pred CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~ 163 (277)
..+ ..++..+|++++|+|+..+....+...+..+... +. |.++++||+|.... .....+..
T Consensus 83 -------~~v----~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-gi----p~IVviNKiD~~~a---~~~~vl~e 143 (607)
T PRK10218 83 -------GEV----ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-GL----KPIVVINKVDRPGA---RPDWVVDQ 143 (607)
T ss_pred -------HHH----HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-CC----CEEEEEECcCCCCC---chhHHHHH
Confidence 122 2334667999999999866666666666665542 32 78999999996533 33333333
Q ss_pred cCCchHHHHHhhcCCeEEEE-eCCCcccccChh----------HHHHHHHHHHHHHhhc
Q 023779 164 ECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTE----------QVRQLLSLVNSVIVQN 211 (277)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~----------~~~~L~~~i~~~~~~~ 211 (277)
+..++..++...... .+....|+..+. ++..|++.|...++..
T Consensus 144 -----i~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 144 -----VFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred -----HHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 333332211100000 001123444443 5788888888877643
No 216
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.56 E-value=5.4e-14 Score=123.27 Aligned_cols=137 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCc--c------------ccC-----------------CCCCcceeeEEEEEeeeCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAF--K------------ASA-----------------GSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~--~------------~~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (277)
++|+++|+.++|||||+++|+...-. . .+. ...+.|......... +++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCC
Confidence 47999999999999999999632210 0 011 012445555555443 577
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+.||||||+.+ +...+......+|++++|+|+..++...+...+..+... +. ++++|++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 8899999999542 222222344577999999999867766666665555543 32 27899999999
Q ss_pred CCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 149 DLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
........+...... +..++...+
T Consensus 145 ~~~~~~~~~~~i~~~-----~~~~~~~~~ 168 (406)
T TIGR02034 145 LVDYDEEVFENIKKD-----YLAFAEQLG 168 (406)
T ss_pred cccchHHHHHHHHHH-----HHHHHHHcC
Confidence 875321233333333 555555444
No 217
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.55 E-value=3.2e-14 Score=110.03 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=70.5
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCccee-eEEEE--------------------------------------
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKT-CEMKT-------------------------------------- 62 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~-------------------------------------- 62 (277)
|+++|..++|||||||+|+|....+.+..+.+.... .....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999999876665443221111 11100
Q ss_pred --------------EeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH
Q 023779 63 --------------TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL 128 (277)
Q Consensus 63 --------------~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l 128 (277)
........+.|+||||+.+...... ..+..+.+.+|++++|+++.+.++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0111123589999999976433222 2222223677999999999966666665554444
Q ss_pred HHHhCcCccCcEEEEEeCC
Q 023779 129 PNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 129 ~~~~~~~~~~~~ivv~nk~ 147 (277)
...... .+++|+||.
T Consensus 154 ~~~~~~----~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDKS----RTIFVLNKA 168 (168)
T ss_dssp HTTTCS----SEEEEEE-G
T ss_pred hcCCCC----eEEEEEcCC
Confidence 443222 589999984
No 218
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.55 E-value=8.7e-13 Score=120.36 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=94.3
Q ss_pred cCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCcc
Q 023779 26 GRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIH 105 (277)
Q Consensus 26 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (277)
|.+|+|||||+|+|+|... ..+. ..+.|........ .+++..+.+|||||..+......+ +.+..... ....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n-~pG~Tv~~~~~~i-~~~~~~i~lvDtPG~~~~~~~s~~--e~v~~~~l-~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGN-WPGVTVEKKEGKL-GFQGEDIEIVDLPGIYSLTTFSLE--EEVARDYL-LNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecC-CCCeEEEEEEEEE-EECCeEEEEEECCCccccCccchH--HHHHHHHH-hhcCCC
Confidence 8999999999999998764 2222 2344444433333 357788999999998765432211 12222211 134789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeC
Q 023779 106 AFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDN 185 (277)
Q Consensus 106 ~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 185 (277)
++++|+|++ .+... +.+..+....+ .|+++|+||+|..+. ..+... .+.+.+..+..++
T Consensus 75 vvI~VvDat-~ler~----l~l~~ql~~~~--~PiIIVlNK~Dl~~~--~~i~~d--------~~~L~~~lg~pvv---- 133 (591)
T TIGR00437 75 LVVNVVDAS-NLERN----LYLTLQLLELG--IPMILALNLVDEAEK--KGIRID--------EEKLEERLGVPVV---- 133 (591)
T ss_pred EEEEEecCC-cchhh----HHHHHHHHhcC--CCEEEEEehhHHHHh--CCChhh--------HHHHHHHcCCCEE----
Confidence 999999998 43322 22222222222 399999999997644 222111 2333344454443
Q ss_pred CCcccccChhHHHHHHHHHHHHH
Q 023779 186 KTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 186 ~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
+.|++++.|++++++.+.+..
T Consensus 134 --~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 134 --PTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred --EEECCCCCCHHHHHHHHHHHh
Confidence 457788899999999998764
No 219
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.55 E-value=2e-14 Score=104.61 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=65.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc--ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFK--ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+|+|+|+.|||||||+++|++..... ......+.+........ ......+.+||++|.... .......+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~-------~~~~~~~~- 71 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVV-DGDRQSLQFWDFGGQEEF-------YSQHQFFL- 71 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEE-TTEEEEEEEEEESSSHCH-------HCTSHHHH-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEe-cCCceEEEEEecCcccee-------cccccchh-
Confidence 69999999999999999999877541 11111222222222211 122334889999995421 11111112
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+|++++|+|++...+... ..++.++....+.....|++||.||.|
T Consensus 72 ---~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 72 ---KKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ---HHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ---hcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 34599999999983322222 234455555543222349999999998
No 220
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=1.6e-13 Score=125.31 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=100.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cc--c---------CCCCCcceeeEEEEEee----eCCceEEEEeCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KA--S---------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPGL 79 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~--~---------~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG~ 79 (277)
.+.++|+|+|+.++|||||+.+|+..... .. + ....+.|.......... ..+..+.||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 34589999999999999999999742210 00 0 00123444333332221 12457899999997
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~ 159 (277)
.++ ..++..+ +..+|++++|+|++.+.+..+...+.++.. . + .|+++|+||+|.... ....
T Consensus 85 ~dF-------~~~v~~s----l~~aD~aILVVDas~gv~~qt~~~~~~~~~-~--~--lpiIvViNKiDl~~a---~~~~ 145 (600)
T PRK05433 85 VDF-------SYEVSRS----LAACEGALLVVDASQGVEAQTLANVYLALE-N--D--LEIIPVLNKIDLPAA---DPER 145 (600)
T ss_pred HHH-------HHHHHHH----HHHCCEEEEEEECCCCCCHHHHHHHHHHHH-C--C--CCEEEEEECCCCCcc---cHHH
Confidence 652 2233333 345699999999986676666555544433 1 2 289999999997533 2222
Q ss_pred HhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.... +... ++... ......|+..+.++.+|++.|...++..
T Consensus 146 v~~e-----i~~~---lg~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 146 VKQE-----IEDV---IGIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHH-----HHHH---hCCCc---ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 2222 3222 22110 0123568888999999999998887653
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.55 E-value=2.5e-13 Score=118.87 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=79.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC------Ccc----cc----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFK----AS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~------~~~----~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
..+.++|+++|+.++|||||+++|++.. .+. .. ....+.|......... ..+..+.||||||..+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHH
Confidence 3456999999999999999999998431 000 00 0113555555444332 4567799999999543
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+..........+|++++|+|+..+....+...+.++... +. .++++++||+|....
T Consensus 88 -----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 -----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 222222233577999999999866667777777776653 33 145578999998754
No 222
>PLN00023 GTP-binding protein; Provisional
Probab=99.55 E-value=1.1e-13 Score=115.35 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=76.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee------------eCCceEEEEeCCCCCCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL------------KDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------------~~~~~~~liDtpG~~~~ 82 (277)
|.....+|+|+|..|||||||++.+++..+........+.+.......... .....+.||||+|..
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE-- 94 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE-- 94 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh--
Confidence 344558999999999999999999997664222211122221111111100 012348899999943
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC---------c-CccCcEEEEEeCCCCCC
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG---------K-NVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~---------~-~~~~~~ivv~nk~D~~~ 151 (277)
.+......++++++++|+|+|++.+-+... ..++..+..... . ....|++||.||+|+..
T Consensus 95 ---------rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 95 ---------RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---------hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 344444556889999999999994433333 244455554321 0 01248999999999754
No 223
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.55 E-value=3.6e-13 Score=108.77 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCccee---------eE-----------------------------
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVTKT---------CE----------------------------- 59 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t~~---------~~----------------------------- 59 (277)
+.|+++|++|+||||++++|+|..+++.+.. ...++.- ..
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999864443311 1100000 00
Q ss_pred ---------EEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCC-CccEEEEEEeCCCCCCHHH-HHHHH
Q 023779 60 ---------MKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKD-GIHAFLVVFSVTNRFSQEE-ETAVH 126 (277)
Q Consensus 60 ---------~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~l~v~d~~~~~~~~~-~~~~~ 126 (277)
...+...+...++|+||||+..... ....+...+...+..+.. ..+.+|+|+++...+...+ ..+.+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~ 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence 0001111124689999999975421 123344556665555555 3468999999886666655 35555
Q ss_pred HHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779 127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (277)
Q Consensus 127 ~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
++... + .++++|+||+|..... ..+.+.+.. -.......|+.+.|.
T Consensus 187 ~ld~~-~----~rti~ViTK~D~~~~~-~~~~~~~~~--------~~~~l~~g~~~v~nr 232 (240)
T smart00053 187 EVDPQ-G----ERTIGVITKLDLMDEG-TDARDILEN--------KLLPLRRGYIGVVNR 232 (240)
T ss_pred HHHHc-C----CcEEEEEECCCCCCcc-HHHHHHHhC--------CccccCCCEEEEECC
Confidence 55442 3 3899999999987652 224444433 011234566666665
No 224
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.54 E-value=8.2e-14 Score=112.35 Aligned_cols=136 Identities=18% Similarity=0.221 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCC--cc------------cc---------------CCCCCcceeeEEEEEeeeCCceE
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKA--FK------------AS---------------AGSSGVTKTCEMKTTVLKDGQVV 71 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~--~~------------~~---------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (277)
+|+++|+.|+|||||+.+|+.... .. .| ....+.|.......+. +.+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 489999999999999999962210 00 00 1122444444444443 678899
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
.+|||||+.+ +...+..+...+|++++|+|+... ........+..+. ..+. +|++|++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999532 222222334567999999999842 2223344443333 2332 3899999
Q ss_pred eCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779 145 TGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 145 nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
||+|.... ....++..+.. +..++...+
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~ 174 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVG 174 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcC
Confidence 99998732 11334555544 555555543
No 225
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.54 E-value=8.1e-14 Score=128.84 Aligned_cols=142 Identities=11% Similarity=0.132 Sum_probs=88.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccC-----------------CCCCcceeeEEEEE
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASA-----------------GSSGVTKTCEMKTT 63 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~ 63 (277)
+..+.++|+++|++++|||||+++|+.....- .|. ...+.|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 44556899999999999999999998533110 111 01234444444433
Q ss_pred eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779 64 VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (277)
Q Consensus 64 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (277)
. +++..+.|+||||+.+ +...+......+|++++|+|+..+....+...+.++... +. ++++|+
T Consensus 100 ~-~~~~~~~liDtPG~~~-----------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 A-TPKRKFIVADTPGHEQ-----------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred c-cCCceEEEEECCChHH-----------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 3 5778899999999532 222222234577999999999866665555555555443 42 378999
Q ss_pred EeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
+||+|........+...... +..++...+
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~ 192 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLG 192 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcC
Confidence 99999864211334444443 555555444
No 226
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.54 E-value=6.1e-14 Score=122.24 Aligned_cols=197 Identities=15% Similarity=0.144 Sum_probs=133.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....||+|+|.-|+||||||-+|+...+++.-+.... .+... .-.+.......++||+.-.+ -..+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP--advtPe~vpt~ivD~ss~~~-----------~~~~ 72 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP--ADVTPENVPTSIVDTSSDSD-----------DRLC 72 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC--CccCcCcCceEEEecccccc-----------hhHH
Confidence 3558999999999999999999998887554332221 11111 11223445588999984222 1222
Q ss_pred HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
+....+.+|+++++++.++ .+..-...|+..++..+|+....|+|+|.||+|.......+++.. ...++.
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~--------~~pim~ 144 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVN--------TLPIMI 144 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHH--------HHHHHH
Confidence 2233445699999998873 344555788999999999888899999999999776522322321 112222
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATELRDKKAEVDSLKE 239 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (277)
. +..++....+||+...++.+++.+..+.+-+.-++.|..+.++........-.++-.+..
T Consensus 145 ~----f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp~~v~al~RIFki~D 205 (625)
T KOG1707|consen 145 A----FAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYDAEEQELKPRCVKALKRIFKISD 205 (625)
T ss_pred H----hHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccccccccccHHHHHHHHHHHhhhc
Confidence 1 223344457899999999999999999998888888988877777766666666666554
No 227
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.54 E-value=3.2e-13 Score=122.80 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee----------C-------CceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK----------D-------GQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~----------~-------~~~~~liDtpG~~ 80 (277)
.+..|+++|++|+|||||+|+|.+....... ..+.|.+......... . -..++||||||..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3467999999999999999999876542211 1122222211111000 0 0127899999965
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
+ +.......+..+|++++|+|++.++...+...+..+... + .|+++++||+|..
T Consensus 83 ~-----------f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-~----vpiIvviNK~D~~ 136 (586)
T PRK04004 83 A-----------FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-K----TPFVVAANKIDRI 136 (586)
T ss_pred H-----------HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-C----CCEEEEEECcCCc
Confidence 3 222222344567999999999866767776666665542 2 3899999999975
No 228
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=111.66 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=102.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEEEEeeeCCc-eEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMKTTVLKDGQ-VVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
-.|++||-+|+|||||+|+|+...+ ..+ ....|+ ....- ...+++. ++++-|.||+........-+...+.+.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa--~YaFTTL~P~iG-~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVA--HYAFTTLRPHIG-TVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-ccc--ccceeeeccccc-eeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 3589999999999999999997664 222 233333 33333 3345554 4999999999987777777778888887
Q ss_pred hhcCCCccEEEEEEeCCCC--CCHHH--HH---HHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 98 GMAKDGIHAFLVVFSVTNR--FSQEE--ET---AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~--~~~~~--~~---~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
..+ ..++||+|++.. .++.+ .. .++...+.. ..+|.+||.||+|..+.+ .+++ .
T Consensus 273 ER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L---~~rp~liVaNKiD~~eae----~~~l--------~ 333 (366)
T KOG1489|consen 273 ERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGL---ADRPALIVANKIDLPEAE----KNLL--------S 333 (366)
T ss_pred Hhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhh---ccCceEEEEeccCchhHH----HHHH--------H
Confidence 766 999999999932 13333 12 222233332 345899999999964321 1112 2
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
++........++ +.||+...++..|++.+..
T Consensus 334 ~L~~~lq~~~V~-----pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 334 SLAKRLQNPHVV-----PVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHHHcCCCcEE-----EeeeccccchHHHHHHHhh
Confidence 333333333222 4577778889999887764
No 229
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.54 E-value=1.8e-13 Score=109.05 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=68.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee---eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL---KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+|+++|++|||||||++.|++..+.....+ +......... ..+..+.||||||... +...+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 589999999999999999997654222111 1111111111 2356799999999553 22333
Q ss_pred hhcCCCc-cEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779 98 GMAKDGI-HAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 98 ~~~~~~~-~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~ 152 (277)
..++... ++++||+|+. .....-.....++..++ ......|++|+.||+|....
T Consensus 66 ~~~~~~~~~~vV~VvD~~-~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSA-TFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECc-cchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 3344555 9999999998 33111112222222211 11122499999999997654
No 230
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.4e-13 Score=117.86 Aligned_cols=178 Identities=14% Similarity=0.135 Sum_probs=110.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC-CCCCchHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD-LSAGSEFVGKEIV 94 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~-~~~~~~~~~~~~~ 94 (277)
...++.|+|+|++|+|||||+|+|+..+. +..++.+.|++.........+|..++|+||.|+-. .....+.+. +.
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g--I~ 340 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG--IE 340 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh--HH
Confidence 34568999999999999999999998887 66677777777766666668999999999999987 222222221 12
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCc----CccCcEEEEEeCCCCCCcccccHHHHhcccCCc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGK----NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPK 167 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~---~~~----~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~ 167 (277)
++ ......+|++++|+|+....+..+....+.+... +.. .-+++++++.||.|...+ +...-..
T Consensus 341 rA-~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~----~~~~~~~---- 411 (531)
T KOG1191|consen 341 RA-RKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK----IPEMTKI---- 411 (531)
T ss_pred HH-HHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc----cccccCC----
Confidence 22 2234677999999999644444444444444332 111 122689999999997654 1000000
Q ss_pred hHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 168 PLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
........+ ..+.. ....++.++.+...|.+.+.+.+..
T Consensus 412 -~~~~~~~~~~~~~~i---~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 412 -PVVYPSAEGRSVFPI---VVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred -ceeccccccCcccce---EEEeeechhhhHHHHHHHHHHHHHH
Confidence 000001111 11111 1124667788999998888777654
No 231
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2e-13 Score=98.44 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=98.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..++.++|.+.+|||||+-+-++..+...-.+..+.. ..+..+.. -....+.+|||.|.. .+....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqE-----------ryrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQE-----------RYRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccch-----------hhhHHH
Confidence 4689999999999999999999877533322222222 22222211 123458999999933 344555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+++++++|++++|+++.-+... ..+.-.++..+-.++ |+|++.||||+... ..+... .-+.+....
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~na--qvilvgnKCDmd~e--Rvis~e-------~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNA--QVILVGNKCDMDSE--RVISHE-------RGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCc--eEEEEecccCCccc--eeeeHH-------HHHHHHHHh
Confidence 567899999999999983222222 223333333333333 89999999997654 222111 133455555
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
|-.++ +.|++.+-++..+++.+-..+-
T Consensus 157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic 183 (193)
T KOG0093|consen 157 GFEFF------ETSAKENINVKQVFERLVDIIC 183 (193)
T ss_pred ChHHh------hhcccccccHHHHHHHHHHHHH
Confidence 54333 5677777788877776665543
No 232
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.4e-13 Score=123.55 Aligned_cols=217 Identities=22% Similarity=0.259 Sum_probs=133.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCC--ccccCCC--------------CCcceeeEEEEEeeeCC-ceEEEEeCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKA--FKASAGS--------------SGVTKTCEMKTTVLKDG-QVVNVIDTPG 78 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~--~~~~~~~--------------~~~t~~~~~~~~~~~~~-~~~~liDtpG 78 (277)
..+.++|+|+||..+|||||..+|+-..- -..|... .+.|......... |.+ ..+++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~-~~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLF-WKGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEE-EcCceEEEEeCCCC
Confidence 34568999999999999999998862110 0011111 2566666555554 775 9999999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~ 158 (277)
+.|+. .++.+++..+ |+.++|+|+..+........|+.+.+. .+ |.++++||+|....
T Consensus 86 HVDFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a------ 143 (697)
T COG0480 86 HVDFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA------ 143 (697)
T ss_pred ccccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc------
Confidence 99863 4666776655 999999999988888888888877764 33 89999999998876
Q ss_pred HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC-CCC-----CChHHHHHHHHHHHHHH
Q 023779 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG-GQP-----YTDELKRGATELRDKKA 232 (277)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~ 232 (277)
++... ...+...++.....++...... ..+......+....-... +.. .+.+....+.++ +..
T Consensus 144 ~~~~~-----~~~l~~~l~~~~~~v~~pIg~~----~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~--r~~ 212 (697)
T COG0480 144 DFYLV-----VEQLKERLGANPVPVQLPIGAE----EEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEA--REK 212 (697)
T ss_pred Chhhh-----HHHHHHHhCCCceeeeccccCc----cccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHH--HHH
Confidence 23222 4445566666666665554431 111211222211111111 111 224444555454 444
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023779 233 EVDSLKEYSKREISKLMGQMQESYEDRIKRMAEM 266 (277)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (277)
-++.+.+.+++.++.+.+..+...++..+.++..
T Consensus 213 ~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 213 LLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred HHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 5555666666677777776665555544554443
No 233
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=4.7e-13 Score=110.16 Aligned_cols=168 Identities=20% Similarity=0.199 Sum_probs=108.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
|++||-+++|||||+++++...+ .+...+.|+-.....+.. ..+..+++-|.||+........-+..++.+.+..+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkP---KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKP---KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCC---cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 78999999999999999997653 222333343333332332 35667999999999987766666788888888777
Q ss_pred CCCccEEEEEEeCCCCCC----HHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 101 KDGIHAFLVVFSVTNRFS----QEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
-++++|+|++ +.. ..+ ..+...|...-..=..+|.+||+||+|+..+. +.++.+.+ .+.+.
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~~--------~l~~~ 304 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELKK--------ALAEA 304 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHHH--------HHHHh
Confidence 8999999998 332 222 23333343321111335999999999965441 23332222 22233
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
++.....+ .|+....+++.|+..+..++...
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence 33322221 37777789999999998888763
No 234
>PRK13351 elongation factor G; Reviewed
Probab=99.53 E-value=1.5e-13 Score=128.29 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=83.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cc-----cC---------CCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KA-----SA---------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~-----~~---------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
...++|+|+|+.|+|||||+++|+..... .. +. ...+.|......... +.+..+.+|||||..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~ 84 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHI 84 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcH
Confidence 35589999999999999999999742210 00 00 012334444444443 678899999999965
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~ 160 (277)
+ +......++..+|++++|+|+..+........+..+... + .|+++++||+|.... .+...
T Consensus 85 d-----------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~iiviNK~D~~~~---~~~~~ 145 (687)
T PRK13351 85 D-----------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY-G----IPRLIFINKMDRVGA---DLFKV 145 (687)
T ss_pred H-----------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-C----CCEEEEEECCCCCCC---CHHHH
Confidence 4 222223344566999999999866666666666655542 2 389999999997654 45544
Q ss_pred hcc
Q 023779 161 LGH 163 (277)
Q Consensus 161 l~~ 163 (277)
++.
T Consensus 146 ~~~ 148 (687)
T PRK13351 146 LED 148 (687)
T ss_pred HHH
Confidence 444
No 235
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=119.49 Aligned_cols=137 Identities=18% Similarity=0.215 Sum_probs=94.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
++..+...+++|+|-+++|||||+|.++..++ .+.+...|+..-+.++..+.-..+.++||||+.+.-..+..+.+
T Consensus 162 PsIDp~trTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE- 237 (620)
T KOG1490|consen 162 PAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE- 237 (620)
T ss_pred CCCCCCcCeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-
Confidence 44456679999999999999999999987664 33445556655555555567778999999999985432222221
Q ss_pred HHHHHhhcCCCccEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVT--NRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~ 159 (277)
+. ++.....-..++||+.|++ -+++..+ ..++..++.+|... |+|+|+||+|.... +.+.+
T Consensus 238 mq-sITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~--edL~~ 301 (620)
T KOG1490|consen 238 MQ-IITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP--EDLDQ 301 (620)
T ss_pred HH-HHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc--cccCH
Confidence 11 1111122337899999999 3566555 57778888888764 89999999998887 45543
No 236
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.8e-13 Score=111.64 Aligned_cols=154 Identities=21% Similarity=0.301 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCCcceeeEEEEEeee-CCc--eEEEEeCCCCCCCCCCc-----
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGS----- 86 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~-~~~--~~~liDtpG~~~~~~~~----- 86 (277)
+++.++|.+|.|||||||+|++...... .......|........... +|. .++|+|||||+|.....
T Consensus 22 ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~p 101 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWRP 101 (366)
T ss_pred eEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccchh
Confidence 7899999999999999999998754221 1111122333333333222 232 48899999999876432
Q ss_pred --hHHHHHHHHHHhh-------c--CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc
Q 023779 87 --EFVGKEIVKCLGM-------A--KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (277)
Q Consensus 87 --~~~~~~~~~~~~~-------~--~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~ 154 (277)
..+..++..++.. . ..++|+.||.+... .++.+.|...++.+... + ++|-|+.|.|.+.+
T Consensus 102 i~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~----v--NiIPVI~KaD~lT~-- 173 (366)
T KOG2655|consen 102 IVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK----V--NLIPVIAKADTLTK-- 173 (366)
T ss_pred hhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc----c--cccceeeccccCCH--
Confidence 2344455555532 1 23789999999977 56888888777766653 2 89999999999988
Q ss_pred ccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (277)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
..+..+... ....+.....+++.|...
T Consensus 174 ~El~~~K~~-----I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 DELNQFKKR-----IRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHH-----HHHHHHHcCcceecCCCC
Confidence 777777766 676777766666665544
No 237
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.52 E-value=1.3e-13 Score=117.16 Aligned_cols=175 Identities=19% Similarity=0.189 Sum_probs=91.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
...+|+|+|.+|+|||||||+|.|...-+.+..+.+ +|.....+.. ..-.++++||.||.+.+.-+.+. +.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~~~~----Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFPPEE----YL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS--HHH----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCCHHH----HH
Confidence 348999999999999999999987443323333332 3333333332 34456999999999865433322 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC-Cc----ccccH--HHHhcccCCc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL-ED----HEKTL--EDFLGHECPK 167 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~-~~----~~~~l--~~~l~~~~~~ 167 (277)
.... +...|.||++.+ . +++..+..+...++.+ |+ |+.+|-||+|.. .. ....+ +..++. ...
T Consensus 108 ~~~~--~~~yD~fiii~s-~-rf~~ndv~La~~i~~~-gK----~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~ 177 (376)
T PF05049_consen 108 KEVK--FYRYDFFIIISS-E-RFTENDVQLAKEIQRM-GK----KFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRE 177 (376)
T ss_dssp HHTT--GGG-SEEEEEES-S-S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHH
T ss_pred HHcc--ccccCEEEEEeC-C-CCchhhHHHHHHHHHc-CC----cEEEEEecccccHhhhhccCCcccCHHHHHHH-HHH
Confidence 2221 234488777655 3 8988888888888874 55 899999999952 00 00011 122221 001
Q ss_pred hHHHHHhh---cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 168 PLKEILQL---CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
...+-+.. +..+++.+++.... ...++.|.+.+.+-++...
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~----~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLS----KYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTT----STTHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcc----cCChHHHHHHHHHHhHHHH
Confidence 12222222 23567777776443 3678888888887776543
No 238
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.52 E-value=1.1e-12 Score=96.48 Aligned_cols=157 Identities=19% Similarity=0.217 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|.++|..|+||||+++.+.+.+. . ...+|......... +++..+.+||.-| +..+..+.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~-~~~~~L~iwDvGG-----------q~~lr~~W 77 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLE-YKGYTLNIWDVGG-----------QKTLRSYW 77 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEE-ecceEEEEEEcCC-----------cchhHHHH
Confidence 468999999999999999999998774 2 22344444444443 7889999999998 23566677
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
..+|...|++++|+|.+.+..-.+ ....+++..... +-.|++|+.||.|..+. -..+.+... ..+.++...
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~---~~L~~l~ks 150 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKA---LDLEELAKS 150 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHh---hCHHHhccc
Confidence 777888899999999984333222 222333332211 11389999999997644 333332211 126666666
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i 204 (277)
++.+.+. +++..+.++.+-++++
T Consensus 151 ~~~~l~~------cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 151 HHWRLVK------CSAVTGEDLLEGIDWL 173 (185)
T ss_pred cCceEEE------EeccccccHHHHHHHH
Confidence 6666664 4555554444434443
No 239
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.52 E-value=2.9e-13 Score=119.32 Aligned_cols=168 Identities=11% Similarity=0.112 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEEEEe--------------------------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMKTTV-------------------------------- 64 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~-------------------------------- 64 (277)
...+|+++|+..+|||||+.+|+|....... ....+.|...++....
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 4589999999999999999999986642211 1112223222211100
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FSQEEETAVHRLPNLFGKNVFDYMIVV 143 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (277)
....+.+.|+||||.. .+...+......+|++++|+|+..+ ......+.+..+. .++- +|++|+
T Consensus 113 ~~~~~~i~~IDtPGH~-----------~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi---~~iIVv 177 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHD-----------ILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKL---KHIIIL 177 (460)
T ss_pred ccccceEeeeeCCCHH-----------HHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCC---CcEEEE
Confidence 0012468999999943 3333333344577999999999843 3444455554443 3443 279999
Q ss_pred EeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 144 FTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 144 ~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+||+|.... ..+.+.+.. +++++..+.. ......+.|+..+.|++.|++.|...++.
T Consensus 178 lNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 178 QNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 999998754 444444444 5555433211 11122356888889999999999976654
No 240
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.52 E-value=6.2e-13 Score=106.84 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=70.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------CCCCCcceeeEEEEEee----eCCceEEEEeCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------AGSSGVTKTCEMKTTVL----KDGQVVNVIDTPG 78 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------~~~~~~t~~~~~~~~~~----~~~~~~~liDtpG 78 (277)
++|+++|+.|+|||||+++|++....... ....+.+.......... .....+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 46999999999999999999864321110 00012222222222111 1235689999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
..+. ......++..+|++++|+|+....+.....++..+.. .+ .|+++|+||+|..
T Consensus 81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 7652 1222223456699999999985555555444444332 12 3899999999975
No 241
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=2.1e-13 Score=111.30 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=107.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.--+|+|||++++|||||+|.|++... .......|+-..+.....+++-.+.++|+||+.....+..-...++.
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s---eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vl--- 135 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS---EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVL--- 135 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc---cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceee---
Confidence 447999999999999999999998663 33334445555555556689999999999999865544332223332
Q ss_pred hhcCCCccEEEEEEeCCC------------------------------------------CCCHHHHHHHH-H-------
Q 023779 98 GMAKDGIHAFLVVFSVTN------------------------------------------RFSQEEETAVH-R------- 127 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~------------------------------------------~~~~~~~~~~~-~------- 127 (277)
...+.+|++++|+|+.. +++..+...+. .
T Consensus 136 -sv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 136 -SVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred -eeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 33567799999999872 22211111111 1
Q ss_pred ---------------HHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCccccc
Q 023779 128 ---------------LPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAK 192 (277)
Q Consensus 128 ---------------l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 192 (277)
+..+.+.....|.++|+||.|.... +.++...+. . +....|++
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~l~~~-------------~-------~~v~isa~ 272 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELERLARK-------------P-------NSVPISAK 272 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHHHHhc-------------c-------ceEEEecc
Confidence 1222334557899999999998765 333332221 1 22234777
Q ss_pred ChhHHHHHHHHHHHHHh
Q 023779 193 GTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 193 ~~~~~~~L~~~i~~~~~ 209 (277)
.+.|+++|.+.|.+.+.
T Consensus 273 ~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 273 KGINLDELKERIWDVLG 289 (365)
T ss_pred cCCCHHHHHHHHHHhhC
Confidence 88899999999999875
No 242
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.50 E-value=1.1e-12 Score=105.78 Aligned_cols=116 Identities=19% Similarity=0.171 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-C--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-D--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+|+++|+.|||||||++++.+..+..... .|........... . ...+.+|||+|. .++...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq-----------~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQ-----------EEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCH-----------HHHHHH
Confidence 899999999999999999999877643322 1211111111111 1 345889999993 345566
Q ss_pred HhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 97 LGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
...++.+++++++|+|... +.......+...+....+.. .|+++|.||+|....
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 6667899999999999983 22222345555556654322 399999999997755
No 243
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.50 E-value=1.7e-13 Score=109.94 Aligned_cols=115 Identities=20% Similarity=0.309 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccc----cC----------CCCCcceeeEEEEEee-e--------CCceEEEEeC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKA----SA----------GSSGVTKTCEMKTTVL-K--------DGQVVNVIDT 76 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~----~~----------~~~~~t~~~~~~~~~~-~--------~~~~~~liDt 76 (277)
++|+++|+.++|||||+.+|+...-... +. ...+.|.......... . .+..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4799999999999999999974321000 00 0112232222211111 1 1567899999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
||..+. ..... .++..+|++++|+|+..+.+......+..+... . .|+++++||+|..
T Consensus 81 PG~~~f-------~~~~~----~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-------SSEVT----AALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-------HHHHH----HHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 997752 12233 334566999999999977777666665555432 2 2899999999975
No 244
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=4.9e-12 Score=95.27 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-----cCCCCC---cceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-----SAGSSG---VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV 89 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 89 (277)
...+|+++|+.|+||||++..++....... ..+..+ .|+...+.....+.+..+++++|||.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq---------- 78 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQ---------- 78 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCc----------
Confidence 346899999999999999999986653111 112222 45555555566555688999999993
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
.++.-.+....+++.++++++|.+...+.....++..+..... .|++|..||.|....
T Consensus 79 -~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a 136 (187)
T COG2229 79 -ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA 136 (187)
T ss_pred -HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC
Confidence 3455555556788999999999986666666777777776543 289999999997765
No 245
>PLN03126 Elongation factor Tu; Provisional
Probab=99.47 E-value=1.4e-12 Score=115.81 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=89.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+.++|+++|+.++|||||+++|++..... ......+.|.......+. +++..+.+|||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH-
Confidence 455899999999999999999998522100 001123445444444333 5678899999999542
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHh
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFL 161 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l 161 (277)
+...+......+|++++|+|+..+....+++.+..+... +.. ++++++||+|.... .. .+...
T Consensus 157 ----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi~---~iIvvvNK~Dl~~~--~~~~~~i~ 220 (478)
T PLN03126 157 ----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GVP---NMVVFLNKQDQVDD--EELLELVE 220 (478)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCC---eEEEEEecccccCH--HHHHHHHH
Confidence 222223333567999999999877777777777766553 431 37889999998754 33 23333
Q ss_pred cccCCchHHHHHhhcC
Q 023779 162 GHECPKPLKEILQLCD 177 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~ 177 (277)
.+ +..++..++
T Consensus 221 ~~-----i~~~l~~~g 231 (478)
T PLN03126 221 LE-----VRELLSSYE 231 (478)
T ss_pred HH-----HHHHHHhcC
Confidence 33 667776653
No 246
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.47 E-value=9.4e-13 Score=116.45 Aligned_cols=139 Identities=17% Similarity=0.203 Sum_probs=88.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC--ccc------------c---------------CCCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA--FKA------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~~~------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (277)
+..+|+++|+.++|||||+.+|+.... ... + ....+.|.......+. +++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~-~~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEc-cCC
Confidence 448999999999999999998873110 000 0 0122455555555443 678
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcEE
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
+.++|+||||+.+ +...+......+|++++|+|+..+. ....++.+..+.. .|-. ++|
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi~---~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGVK---QMI 149 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCCC---eEE
Confidence 8899999999543 3333333446779999999998543 2455666666554 3432 578
Q ss_pred EEEeCCCCCC--cccccHHHHhcccCCchHHHHHhhcC
Q 023779 142 VVFTGGDDLE--DHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 142 vv~nk~D~~~--~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
|++||+|... -....++..... +..++...+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g 182 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVG 182 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHH-----HHHHHHhcC
Confidence 9999999432 111455666655 666666554
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.7e-12 Score=112.52 Aligned_cols=160 Identities=15% Similarity=0.174 Sum_probs=116.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.++.|-|+|+...|||||+.+|-+..+... -..+.|..++.+.+....|..++|+||||.. .|...-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR 218 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR 218 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence 567899999999999999999987666333 2457888888888877789999999999943 344444
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH---HHHh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK---EILQ 174 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~---~~~~ 174 (277)
.......|.+++|+.+.+++.+.+.+.+..++.. ++ |++|.+||+|+.+. ..+..... |- =.++
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A---~V--piVvAinKiDkp~a---~pekv~~e-----L~~~gi~~E 285 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA---NV--PIVVAINKIDKPGA---NPEKVKRE-----LLSQGIVVE 285 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHhc---CC--CEEEEEeccCCCCC---CHHHHHHH-----HHHcCccHH
Confidence 4455677999999999988877777766655543 33 99999999997654 33333332 21 1356
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..|..+..+ +.|+.++.|++.|.+.+.-.
T Consensus 286 ~~GGdVQvi----piSAl~g~nl~~L~eaill~ 314 (683)
T KOG1145|consen 286 DLGGDVQVI----PISALTGENLDLLEEAILLL 314 (683)
T ss_pred HcCCceeEE----EeecccCCChHHHHHHHHHH
Confidence 667666553 45777888999888776543
No 248
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.8e-12 Score=112.82 Aligned_cols=162 Identities=16% Similarity=0.187 Sum_probs=112.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+.|.++|+...|||||+-.|-+.++... -..+.|.....+..... ....++|+||||.. .|...
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHe-----------AFt~m 71 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHE-----------AFTAM 71 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHH-----------HHHHH
Confidence 46799999999999999999987776333 24578888888877644 34789999999943 33333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
-...+.-.|.+++|+++..++.+.+...++.++.. +- |++|.+||+|+...+...+...+.. .. =..+.+
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a-~v----P~iVAiNKiDk~~~np~~v~~el~~-~g----l~~E~~ 141 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAA-GV----PIVVAINKIDKPEANPDKVKQELQE-YG----LVPEEW 141 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHC-CC----CEEEEEecccCCCCCHHHHHHHHHH-cC----CCHhhc
Confidence 33344566999999999988888888887777764 33 9999999999886522222222222 00 011222
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
+....+ .+.||+.+.|+++|+..|.-.
T Consensus 142 gg~v~~----VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 142 GGDVIF----VPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred CCceEE----EEeeccCCCCHHHHHHHHHHH
Confidence 322211 256899999999999987654
No 249
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.46 E-value=2.6e-12 Score=100.55 Aligned_cols=154 Identities=20% Similarity=0.274 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-----CCCCCcceeeEEEEEeee-CCc--eEEEEeCCCCCCCCCCch----
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-----AGSSGVTKTCEMKTTVLK-DGQ--VVNVIDTPGLFDLSAGSE---- 87 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-----~~~~~~t~~~~~~~~~~~-~~~--~~~liDtpG~~~~~~~~~---- 87 (277)
.+|.+||.+|.||||++|+|+...+..++ .-+.+.|+.......... ++. .++++|||||+|....+.
T Consensus 47 FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWeP 126 (336)
T KOG1547|consen 47 FNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWEP 126 (336)
T ss_pred eEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhHH
Confidence 68999999999999999999754443321 123345555544433322 332 489999999998765431
Q ss_pred ---HHHHHHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 88 ---FVGKEIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 88 ---~~~~~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
.+.++..+++.. ....+|++||.+..+ ..+...|..+++.+.+.. +++-|+-|.|.+.-
T Consensus 127 I~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlTl- 199 (336)
T KOG1547|consen 127 IEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLTL- 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecccccH-
Confidence 133333333321 124679999999988 778888888888777752 78899999998765
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
+....|.+. +++-+.+.+..++.....
T Consensus 200 -eEr~~Fkqr-----I~~el~~~~i~vYPq~~f 226 (336)
T KOG1547|consen 200 -EERSAFKQR-----IRKELEKHGIDVYPQDSF 226 (336)
T ss_pred -HHHHHHHHH-----HHHHHHhcCccccccccc
Confidence 555566655 666666666666654443
No 250
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.46 E-value=1.7e-12 Score=116.66 Aligned_cols=119 Identities=14% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC--CCCccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (277)
.+.++|+|+|+.|+|||||+++|+. ......|.. ..+.+.......+ .+++..+.+|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~-~~~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQF-PYRDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEE-EECCEEEEEEEC
Confidence 3458999999999999999999962 111111100 0122333333333 367889999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
||..+. ..+.... +..+|++++|+|+..++......++..... .+ .|+++++||+|....
T Consensus 87 PG~~df-------~~~~~~~----l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDF-------SEDTYRT----LTAVDSALMVIDAAKGVEPQTRKLMEVCRL-RD----TPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhh-------HHHHHHH----HHHCCEEEEEEecCCCCCHHHHHHHHHHHh-cC----CCEEEEEECCccccc
Confidence 997652 1223333 345699999999986676666666655443 23 289999999997654
No 251
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-12 Score=113.44 Aligned_cols=167 Identities=19% Similarity=0.239 Sum_probs=119.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc---c----------CCCCCcceeeEEEEEeeeCC---ceEEEEeCCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA---S----------AGSSGVTKTCEMKTTVLKDG---QVVNVIDTPG 78 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~---~----------~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG 78 (277)
|.++-++++||.+...|||||...|+....+-. + .-..+.|...+...+. |.+ ..+++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasif-y~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIF-YKDGQSYLLNLIDTPG 134 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEE-EEcCCceEEEeecCCC
Confidence 446778999999999999999999874332100 0 0123677766666555 343 6689999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~ 158 (277)
..|+.. +..+.+..+ +++|+|+|++++....+...+.+..+. +- .+|.|+||+|.-. ...+
T Consensus 135 HvDFs~-------EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~-~L----~iIpVlNKIDlp~---adpe 195 (650)
T KOG0462|consen 135 HVDFSG-------EVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEA-GL----AIIPVLNKIDLPS---ADPE 195 (650)
T ss_pred cccccc-------eehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHc-CC----eEEEeeeccCCCC---CCHH
Confidence 998754 667777766 999999999988877776665555443 22 5889999999654 3555
Q ss_pred HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
..... +.++...++.... ..|++.+.++.+|++.|.+.++...
T Consensus 196 ~V~~q-----~~~lF~~~~~~~i------~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 196 RVENQ-----LFELFDIPPAEVI------YVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred HHHHH-----HHHHhcCCccceE------EEEeccCccHHHHHHHHHhhCCCCC
Confidence 55554 6666666665433 3488889999999999999887643
No 252
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.44 E-value=2.9e-12 Score=115.23 Aligned_cols=119 Identities=16% Similarity=0.150 Sum_probs=77.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC--CCCccccCC------------------CCCcceeeEEEEEeeeCCceEEEEeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG--RKAFKASAG------------------SSGVTKTCEMKTTVLKDGQVVNVIDT 76 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~liDt 76 (277)
.+.++|+|+|+.|+|||||+++|+- ......|.. ..+.+.......+. +.+..+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~-~~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFP-YRDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEe-eCCeEEEEEEC
Confidence 3558999999999999999999852 111111100 11233333334333 67889999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
||..+ +......++..+|++++|+|+..++......+++.+.. .+ .|+++++||+|....
T Consensus 88 PG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~~----~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHED-----------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-RD----TPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhh-----------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-cC----CCEEEEEECccccCC
Confidence 99753 22222223456799999999986666666666654443 22 389999999997543
No 253
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.44 E-value=4.6e-13 Score=94.01 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|++||+.|+|||||+++|-|.+..... |.. ..+++. ..|||||.+- -......++..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQA------ve~~d~--~~IDTPGEy~-------~~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQA------VEFNDK--GDIDTPGEYF-------EHPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------cce------eeccCc--cccCCchhhh-------hhhHHHHHHHH
Confidence 68999999999999999999987753221 111 112222 2789999553 12344555666
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
....+|++++|..+..+.+.-. ..+...+ .+|+|-|+||.|+.++ ..++ . .+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~----p~f~~~~----~k~vIgvVTK~DLaed--~dI~----~-----~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFP----PGFLDIG----VKKVIGVVTKADLAED--ADIS----L-----VKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCC----ccccccc----ccceEEEEecccccch--HhHH----H-----HHHHHHHcCCc
Confidence 6778999999999883322111 1122222 2379999999998866 3333 2 44556666644
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.++ ..++..+.++++|++++...
T Consensus 122 ~IF-----~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 122 PIF-----ETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ceE-----EEeccCcccHHHHHHHHHhh
Confidence 333 33555668899999887654
No 254
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=6.4e-12 Score=92.33 Aligned_cols=162 Identities=17% Similarity=0.132 Sum_probs=102.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..++++||++-+|||+|+..++...++ +.+.+...++....-+....|. .+.+|||.| ++.+...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfa--elsdptvgvdffarlie~~pg~riklqlwdtag-----------qerfrsi 74 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFA--ELSDPTVGVDFFARLIELRPGYRIKLQLWDTAG-----------QERFRSI 74 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCccc--ccCCCccchHHHHHHHhcCCCcEEEEEEeeccc-----------hHHHHHH
Confidence 478999999999999999999977763 2333322222211112223343 488999999 4466677
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcE-EEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYM-IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~-ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...+|++.-++++|+|++++-+.+- ..++.......+.+ .+++ .+|.+|+|+... ..+.. + ..+.+..
T Consensus 75 tksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P-~k~VFlLVGhKsDL~Sq--RqVt~--E-----EaEklAa 144 (213)
T KOG0091|consen 75 TKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGP-DKVVFLLVGHKSDLQSQ--RQVTA--E-----EAEKLAA 144 (213)
T ss_pred HHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCC-CeeEEEEeccccchhhh--ccccH--H-----HHHHHHH
Confidence 7778899999999999996655544 44555555444422 2344 477899997743 11110 1 1334545
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+|-.++ ++|++.+.|+++.+..+.+-+.
T Consensus 145 ~hgM~FV------ETSak~g~NVeEAF~mlaqeIf 173 (213)
T KOG0091|consen 145 SHGMAFV------ETSAKNGCNVEEAFDMLAQEIF 173 (213)
T ss_pred hcCceEE------EecccCCCcHHHHHHHHHHHHH
Confidence 5554444 5688888899988887766543
No 255
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.39 E-value=1.1e-11 Score=109.77 Aligned_cols=139 Identities=15% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC--c------------cc---------------cCCCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA--F------------KA---------------SAGSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~--~------------~~---------------~~~~~~~t~~~~~~~~~~~~~ 68 (277)
+.++|+++|+.++|||||+-+|+-... . .. .....+.|.......+. +.+
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~-~~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE-TTK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec-CCC
Confidence 448999999999999999988862110 0 00 01122455555555444 577
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCcCccCcEE
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-FS------QEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~------~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
+.++++||||.. ++...+..++..+|++++|+|+..+ +. ...++.+..+.. .+-. +++
T Consensus 85 ~~i~liDtPGh~-----------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi~---~iI 149 (447)
T PLN00043 85 YYCTVIDAPGHR-----------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGVK---QMI 149 (447)
T ss_pred EEEEEEECCCHH-----------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCCC---cEE
Confidence 889999999943 3444445556788999999999843 32 333444444433 3432 678
Q ss_pred EEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779 142 VVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 142 vv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
|++||+|.... ....+++.++. ++.++...+
T Consensus 150 V~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 150 CCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 89999996521 11345555655 777777665
No 256
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.39 E-value=2.1e-12 Score=94.32 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
+.+|+++|..=+|||||+-..+...+.....+....+.......+. ...-.+.+|||.| ++.+-..-.
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAG-----------QErfHALGP 80 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAG-----------QERFHALGP 80 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccc-----------hHhhhccCc
Confidence 3899999999999999998887544311111111111111111111 1234588999999 223333334
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.+|++.++.|+|+|++.+-+..- +.|+..++.+.|..+ -++||.||+|..+. ..+. ... .....+..|
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEee--R~Vt--~qe-----Ae~YAesvG 149 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEE--RQVT--RQE-----AEAYAESVG 149 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHh--hhhh--HHH-----HHHHHHhhc
Confidence 67899999999999995544433 677778888888776 78899999996533 1110 111 233445556
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..|. ..|++.+.++.+|+..+...+-
T Consensus 150 A~y~------eTSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 150 ALYM------ETSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred hhhe------ecccccccCHHHHHHHHHHHHH
Confidence 6655 4688889999999998866443
No 257
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=4.5e-11 Score=96.67 Aligned_cols=111 Identities=16% Similarity=0.143 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+..|+++|++|+|||||+|.|++........ ....+ .......+..+.++||||.. ..+...
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~-~~~g~-----i~i~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNIS-DIKGP-----ITVVTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccc-ccccc-----EEEEecCCceEEEEeCCchH----------HHHHHH
Confidence 345889999999999999999998753211111 11111 11122367789999999832 223333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLED 152 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~ 152 (277)
+ ..+|++++++|+...+...+..++..+... +. | +++|+||+|....
T Consensus 101 a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g~----p~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 A----KVADLVLLLIDASFGFEMETFEFLNILQVH-GF----PRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-CC----CeEEEEEeccccCCc
Confidence 2 456999999999867777777777777653 32 5 4569999998743
No 258
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.9e-11 Score=88.85 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+++++|+.|+|||.|+..+....+ .. .+.+...+..... +....+ ..+.+|||.| ++.+....
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kf-kD-dssHTiGveFgSr-IinVGgK~vKLQIWDTAG-----------QErFRSVt 75 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKF-KD-DSSHTIGVEFGSR-IVNVGGKTVKLQIWDTAG-----------QERFRSVT 75 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhh-cc-cccceeeeeecce-eeeecCcEEEEEEeeccc-----------HHHHHHHH
Confidence 6899999999999999999886554 22 2222222222211 122333 3588999999 44666667
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+|+++.+.++|+|++.+-+... ..|+.-++.+..+.+ -++++.||.|....
T Consensus 76 RsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~ 129 (214)
T KOG0086|consen 76 RSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPE 129 (214)
T ss_pred HHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChh
Confidence 778999999999999996555544 345555555544432 45566899996644
No 259
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.37 E-value=4.9e-11 Score=103.66 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=55.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--------------------eeC---CceEEEEeC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--------------------LKD---GQVVNVIDT 76 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~---~~~~~liDt 76 (277)
.+|+|+|.+|+|||||+|+|++..... ... ...|......... ..+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~-~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI-ANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc-cCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 579999999999999999999876422 111 1222222111100 011 245789999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
||+.........+...+...+ +.+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~i----r~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL----RQADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 999764332333444454444 4569999999996
No 260
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.37 E-value=4.6e-11 Score=101.66 Aligned_cols=129 Identities=16% Similarity=0.185 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc-----------------cccCCCCCcceeeEE---EEEeeeCC----ceEE
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF-----------------KASAGSSGVTKTCEM---KTTVLKDG----QVVN 72 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~-----------------~~~~~~~~~t~~~~~---~~~~~~~~----~~~~ 72 (277)
...+.|+++|+.++|||||||++++.-+. .++.+..-.|+.... ........ .+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45589999999999999999999998221 112222224444444 22222233 5799
Q ss_pred EEeCCCCCCCCCCchHHHHH--------------HHHH----HhhcC-CCccEEEEEE-eCC------CCCCHHHHHHHH
Q 023779 73 VIDTPGLFDLSAGSEFVGKE--------------IVKC----LGMAK-DGIHAFLVVF-SVT------NRFSQEEETAVH 126 (277)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~--------------~~~~----~~~~~-~~~~~~l~v~-d~~------~~~~~~~~~~~~ 126 (277)
++||+|+.+.......-... |..+ ..... .+++..|+|. |.+ ..+...+.++++
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998755332211111 0011 01112 3678888888 664 356677788888
Q ss_pred HHHHHhCcCccCcEEEEEeCCCCC
Q 023779 127 RLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 127 ~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
.+++. +. |+++|+|+.|-.
T Consensus 175 eLk~~-~k----PfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL-NK----PFIILLNSTHPY 193 (492)
T ss_pred HHHhc-CC----CEEEEEECcCCC
Confidence 88875 43 999999999944
No 261
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.37 E-value=6.8e-11 Score=100.62 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=57.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC----------------ceEEEEeCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG----------------QVVNVIDTPGLFDLS 83 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~liDtpG~~~~~ 83 (277)
.+|+|+|.+|+|||||+|+|++... ..+. ...+|...........+. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~n-ypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAAN-YPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecc-cccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999998773 2211 122332322211111111 258999999998654
Q ss_pred CCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
.....+...+...+ +.+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 43344555555444 4669999999984
No 262
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.36 E-value=8.8e-12 Score=100.14 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|+.|+||||..+.|.+... +......+.|.+....+........+.+||+||..+...... .......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~------~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYF------NSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTH------TCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccc------cccHHHH
Confidence 689999999999999999996653 333445567777776665545566899999999876432210 0111123
Q ss_pred CCCccEEEEEEeCC-CCCCHHHHHH---HHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 101 KDGIHAFLVVFSVT-NRFSQEEETA---VHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 101 ~~~~~~~l~v~d~~-~~~~~~~~~~---~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
+.++++++||+|+. ..+...-... ++.+.+. .+++ .+.|++.|+|.+.+ ....+..+. ..+.+.+.+...
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~--~~r~~~~~~-~~~~i~~~~~~~ 147 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE--DEREEIFRD-IQQRIRDELEDL 147 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H--HHHHHHHHH-HHHHHHHHHHHT
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH--HHHHHHHHH-HHHHHHHHhhhc
Confidence 46779999999998 4433322222 3333332 3333 89999999998865 222222222 111144444433
Q ss_pred C-CeEEEEeCCCcc
Q 023779 177 D-NRCVLFDNKTKD 189 (277)
Q Consensus 177 ~-~~~~~~~~~~~~ 189 (277)
+ .....|...++.
T Consensus 148 ~~~~~~~~~TSI~D 161 (232)
T PF04670_consen 148 GIEDITFFLTSIWD 161 (232)
T ss_dssp T-TSEEEEEE-TTS
T ss_pred cccceEEEeccCcC
Confidence 3 246666666554
No 263
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.35 E-value=7.1e-11 Score=99.71 Aligned_cols=87 Identities=18% Similarity=0.135 Sum_probs=53.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEE--EEEe---------------------eeCCceEEEEeCCC
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM--KTTV---------------------LKDGQVVNVIDTPG 78 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~---------------------~~~~~~~~liDtpG 78 (277)
|+++|.+|+|||||+|+|++... .....+. .|..... .... ......+.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pf-tT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPF-TTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCC-ccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 68999999999999999998764 2221111 2212111 1110 01224689999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
+.........+...+... ++.+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~----ir~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDD----LRDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHH----HHHCCEEEEEEeCC
Confidence 965432223334444444 35669999999997
No 264
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.9e-11 Score=102.15 Aligned_cols=137 Identities=18% Similarity=0.267 Sum_probs=93.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------------------------CCcceeeEEEEEe
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------------------------SGVTKTCEMKTTV 64 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---------------------------------~~~t~~~~~~~~~ 64 (277)
+..+++++|+..+|||||+-.|+ +..|... .+.|.......+.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLl----y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fe 81 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLL----YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFE 81 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhH----HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEee
Confidence 34899999999999999998886 2222111 1566666555554
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCcc
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVF 137 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~ 137 (277)
.+...++++|+||.- .+..-.......+|+.++|+|+... ..+.++..+ +|....|-.
T Consensus 82 -t~k~~~tIiDaPGHr-----------dFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi~-- 146 (428)
T COG5256 82 -TDKYNFTIIDAPGHR-----------DFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGIK-- 146 (428)
T ss_pred -cCCceEEEeeCCchH-----------HHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCCc--
Confidence 456679999999933 2333333344678999999999843 333344443 444455643
Q ss_pred CcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 138 DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 138 ~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
.+||++||+|...-....+++.... +..+++.+|..
T Consensus 147 -~lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~~ 182 (428)
T COG5256 147 -QLIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGYN 182 (428)
T ss_pred -eEEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCCC
Confidence 8999999999886544677777776 77788888843
No 265
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.32 E-value=5.2e-12 Score=97.16 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEE--eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTT--VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
...|+|+|++|+|||+|+..|.......+ .|....-... ....+..+.+||+||.... ...+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T------~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rl-------r~~~~~~ 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPT------VTSMENNIAYNVNNSKGKKLRLVDIPGHPRL-------RSKLLDE 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---------SSEEEECCGSSTCGTCECEEEETT-HCC-------CHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCe------eccccCCceEEeecCCCCEEEEEECCCcHHH-------HHHHHHh
Confidence 36799999999999999999985533221 1111111111 1124567999999997642 2233332
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~ 152 (277)
+. +.+.+-+++||+|.+ .+...-....+.|..++ ......|++|+.||.|....
T Consensus 70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 11 234579999999987 33222233333333322 11223499999999998754
No 266
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.1e-10 Score=101.07 Aligned_cols=131 Identities=21% Similarity=0.269 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-----------------------------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------------------------------- 62 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 62 (277)
..-+|+++|.+++||||++|+++-..+.++|..+.+. ..+.+..
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~Tn-cF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTN-CFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccce-eeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3478999999999999999999988887777544310 0001100
Q ss_pred ------EeeeCC-------ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHH
Q 023779 63 ------TVLKDG-------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP 129 (277)
Q Consensus 63 ------~~~~~~-------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~ 129 (277)
...++. ..+.++|.||+.-. .+...++......+|+++||+++.+.++..++.++....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~--------se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs 258 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD--------SELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVS 258 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCc--------hhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhh
Confidence 111221 24789999998853 244455555567889999999999888888888777665
Q ss_pred HHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 130 NLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 130 ~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
+- +.+++|+.||||....+..-.++.+.
T Consensus 259 ~~-----KpniFIlnnkwDasase~ec~e~V~~ 286 (749)
T KOG0448|consen 259 EE-----KPNIFILNNKWDASASEPECKEDVLK 286 (749)
T ss_pred cc-----CCcEEEEechhhhhcccHHHHHHHHH
Confidence 53 23788999999977653233344443
No 267
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.31 E-value=7.8e-11 Score=92.81 Aligned_cols=161 Identities=23% Similarity=0.223 Sum_probs=99.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|.+|+|||+|...+.+..+.... .+|....+......++. .+.|+||+|.. ++...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y----~ptied~y~k~~~v~~~~~~l~ilDt~g~~-----------~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY----DPTIEDSYRKELTVDGEVCMLEILDTAGQE-----------EFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc----CCCccccceEEEEECCEEEEEEEEcCCCcc-----------cChHH
Confidence 378999999999999999988876653321 22222222222223443 47799999933 33344
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...+....|+|++|++++++-+..+ ..+.+.+....+. ..-|+++|+||+|....-....++ -+.+...
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~ 137 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS 137 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence 4445677799999999996655555 3444444333232 224999999999976520011111 1222233
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ++|++...++++++..+.+.+..
T Consensus 138 ~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 333333 56777778999999988887765
No 268
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.30 E-value=1.1e-11 Score=89.42 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=94.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
...+.++|-.++|||||+|.+....... ...+|+-....... .....+.+||.||-. .+.....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e----dmiptvGfnmrk~t-kgnvtiklwD~gGq~-----------rfrsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE----DMIPTVGFNMRKVT-KGNVTIKLWDLGGQP-----------RFRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh----hhcccccceeEEec-cCceEEEEEecCCCc-----------cHHHHHH
Confidence 4678999999999999999987543311 12334444444332 344568899999933 4555556
Q ss_pred hcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 99 MAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.++++.++++||+|+.. .++..-.+...++.+..- ...|++|+.||.|..+. -.-.+.+.. + .+...
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l--~gip~LVLGnK~d~~~A--L~~~~li~r-----m-gL~si- 152 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSL--TGIPLLVLGNKIDLPGA--LSKIALIER-----M-GLSSI- 152 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhh--cCCcEEEecccccCccc--ccHHHHHHH-----h-Ccccc-
Confidence 67899999999999982 333322222223322211 11499999999997654 222222221 0 01111
Q ss_pred CCe-EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 177 DNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 177 ~~~-~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
-+| ++.| ..|+++..+++.+++++.+.-
T Consensus 153 tdREvcC~----siScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 153 TDREVCCF----SISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred ccceEEEE----EEEEcCCccHHHHHHHHHHHh
Confidence 122 2222 236677789999999887654
No 269
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=2e-11 Score=92.13 Aligned_cols=164 Identities=13% Similarity=0.046 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
..+..+|+++|--|+||||+++.|--..+..+ .+|.-..+..+. +.+..+.+||.-|.. .+..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~-ykn~~f~vWDvGGq~-----------k~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVE-YKNISFTVWDVGGQE-----------KLRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEE-EcceEEEEEecCCCc-----------cccc
Confidence 45668999999999999999998864443222 445555555544 678899999999943 3455
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
....+++..++++||+|.+++..-.+ ......+...-- ...|+++..||.|.... -+..++-+. -.+-
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l--~~~~llv~aNKqD~~~a--ls~~ei~~~------L~l~ 146 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPEL--RNAPLLVFANKQDLPGA--LSAAEITNK------LGLH 146 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCccc--CCceEEEEechhhcccc--CCHHHHHhH------hhhh
Confidence 56667889999999999983322222 222222322211 22489999999997765 443333221 1222
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+...++.. .+.|..+.++.+-++++...+..
T Consensus 147 ~l~~~~w~iq----~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 147 SLRSRNWHIQ----STCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred ccCCCCcEEe----eccccccccHHHHHHHHHHHHhc
Confidence 3333444442 33555678999999998887653
No 270
>PTZ00416 elongation factor 2; Provisional
Probab=99.29 E-value=2.4e-11 Score=115.29 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccC----------CCCCcceeeEEEEEeeeC----------CceE
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK----ASA----------GSSGVTKTCEMKTTVLKD----------GQVV 71 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~----------~~~~~t~~~~~~~~~~~~----------~~~~ 71 (277)
.++.++|+++|+.++|||||+++|+...-.. .|. ...+.|......... +. +..+
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~~~~~~~~~~~i 94 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLY-YEHDLEDGDDKQPFLI 94 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEE-eecccccccCCCceEE
Confidence 3456899999999999999999998532110 000 001222222112122 22 5569
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
.++||||+.+ +...+..+...+|++++|+|+..++...+...++.+... + .|+++++||+|..
T Consensus 95 ~liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~-~----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 95 NLIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE-R----IRPVLFINKVDRA 157 (836)
T ss_pred EEEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc-C----CCEEEEEEChhhh
Confidence 9999999765 222233345677999999999977888888777766653 2 2899999999987
No 271
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.29 E-value=1.8e-11 Score=94.62 Aligned_cols=165 Identities=19% Similarity=0.120 Sum_probs=105.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-Cce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~--~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.++++|||..++|||+++-+.+...+ +.. ..+|+...+......+ +.. +.+|||.|-.+. .+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~f-p~~---yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAF-PEE---YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcC-ccc---ccCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence 48899999999999999988875543 332 2345554444444453 554 789999996653 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~~ 168 (277)
.-..+|+..|+||+|+++..+.+..+ ..|+..++..+. .+ |+|+|+||.|+..+ ...-+.+... ....
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp-~v--piiLVGtk~DLr~d--~~~~~~l~~~~~~~Vt~~~ 143 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCP-NV--PIILVGTKADLRDD--PSTLEKLQRQGLEPVTYEQ 143 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCC-CC--CEEEEeehHHhhhC--HHHHHHHHhccCCcccHHH
Confidence 11347899999999999985555554 566777777663 33 99999999997744 2221122210 1122
Q ss_pred HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
...+....|..-+. ++|+....++.++++......
T Consensus 144 g~~lA~~iga~~y~-----EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 144 GLELAKEIGAVKYL-----ECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHHHHHHhCcceee-----eehhhhhCCcHHHHHHHHHHH
Confidence 34455555543222 667777777777777665543
No 272
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.27 E-value=1.6e-11 Score=114.97 Aligned_cols=118 Identities=17% Similarity=0.281 Sum_probs=75.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC--------------ccccCCCCCcceeeEEEE---EeeeCCceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA--------------FKASAGSSGVTKTCEMKT---TVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~~~~~liDtpG~~ 80 (277)
..++|+++|+.|+|||||+++|+.... +.......+.|....... ...+.+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 458999999999999999999863210 000000122333222111 123567789999999987
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
+.. .....+ +..+|++++|+|+..+....+...+..+... + .|.++++||+|...
T Consensus 98 ~f~-------~~~~~a----l~~aD~~llVvda~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFG-------GDVTRA----MRAVDGAIVVVCAVEGVMPQTETVLRQALKE-N----VKPVLFINKVDRLI 152 (720)
T ss_pred ccH-------HHHHHH----HHhcCEEEEEEecCCCCCccHHHHHHHHHHc-C----CCEEEEEEChhccc
Confidence 632 223333 3556999999999866666666665554432 2 27789999999764
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.26 E-value=5.4e-11 Score=111.15 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=72.0
Q ss_pred EcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779 25 LGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (277)
Q Consensus 25 vG~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (277)
+|+.|+|||||+++|+..... ..+.. ..+.|......... +.+..+.+|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHH------
Confidence 699999999999999532211 00000 12344444444443 68889999999996531
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
....... +..+|++++|+|++..........+..+... + .|+++|+||+|....
T Consensus 74 -~~~~~~~----l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~-~----~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVERA----LRVLDGAVVVVCAVGGVEPQTETVWRQAEKY-G----VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHHH----HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 1222333 3456999999999866666666666555442 2 289999999997644
No 274
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.26 E-value=7.7e-11 Score=112.04 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=78.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc----cC----------CCCCcceeeEEEEEee---------------e
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKA----SA----------GSSGVTKTCEMKTTVL---------------K 66 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~----~~----------~~~~~t~~~~~~~~~~---------------~ 66 (277)
..+.++|+|+|+.++|||||+++|+...-.-. +. ...+.|.......... .
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 34568999999999999999999974331100 00 0112333322222221 1
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+..++++||||+.++ ..++..+ ...+|+.++|+|+..++...++..++.+... + .|+++++||
T Consensus 96 ~~~~inliDtPGh~dF-------~~e~~~a----l~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-~----~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVDF-------SSEVTAA----LRITDGALVVVDCIEGVCVQTETVLRQALGE-R----IRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHHH-------HHHHHHH----HhhcCEEEEEEECCCCCcccHHHHHHHHHHC-C----CCEEEEEEC
Confidence 2566899999997642 2233333 3556999999999988887787777766543 2 289999999
Q ss_pred CCCC
Q 023779 147 GDDL 150 (277)
Q Consensus 147 ~D~~ 150 (277)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.24 E-value=7.1e-11 Score=94.45 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=67.7
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH--HH-HHhCcCccCcEEEEEe
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR--LP-NLFGKNVFDYMIVVFT 145 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~--l~-~~~~~~~~~~~ivv~n 145 (277)
..+.+|||||......+... +.-+...+... .+-+++||+|.. +-+......-++ .+ -++... .|+|+++|
T Consensus 116 ~~~~liDTPGQIE~FtWSAs-GsIIte~lass--~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktk--lp~ivvfN 189 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSAS-GSIITETLASS--FPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTK--LPFIVVFN 189 (366)
T ss_pred cCEEEEcCCCceEEEEecCC-ccchHhhHhhc--CCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhcc--CCeEEEEe
Confidence 34889999997644332211 12233344333 568899999987 333322211122 12 222333 49999999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEE------------E---eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVL------------F---DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~------------~---~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
|.|.... .-..+++.. -..+++.+......|.. | -.....|+..+.|+++++..+...+.+
T Consensus 190 K~Dv~d~--~fa~eWm~D--fE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 190 KTDVSDS--EFALEWMTD--FEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccccc--HHHHHHHHH--HHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 9998776 444444433 01122222210100000 0 011234566677788888877777765
No 276
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=4.2e-10 Score=80.74 Aligned_cols=155 Identities=16% Similarity=0.160 Sum_probs=91.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.+.+++|+-|+|||.|+..++...+... .+....+......+. +-....+.+|||.| .+++.....
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmad--cphtigvefgtriievsgqkiklqiwdtag-----------qerfravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMAD--CPHTIGVEFGTRIIEVSGQKIKLQIWDTAG-----------QERFRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhc--CCcccceecceeEEEecCcEEEEEEeeccc-----------HHHHHHHHH
Confidence 6788999999999999999986664222 122222222222222 12234588999999 345666667
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.+++++.+.|.|+|+..+-+-.- ..|+.-.+.+..+. .-++++.||.|.....+...++ .+.+.+..|
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faeeng 147 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEENG 147 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhhcC
Confidence 78999999999999984333222 23333334433332 2466778999965331233332 233444433
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLV 204 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i 204 (277)
--+. ++|++.+.++++.+-..
T Consensus 148 l~fl------e~saktg~nvedafle~ 168 (215)
T KOG0097|consen 148 LMFL------EASAKTGQNVEDAFLET 168 (215)
T ss_pred eEEE------EecccccCcHHHHHHHH
Confidence 3332 45777788877654433
No 277
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.23 E-value=7.4e-11 Score=97.29 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=56.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCCCC
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSA 84 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~ 84 (277)
|+|+|.+|+|||||+|+|++... ..+. ...+|......... +.+ ..+.++||||+.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n-~pftTi~p~~g~v~-v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~ 77 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAAN-YPFCTIEPNVGIVP-VPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 77 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-cccc-ccccchhceeeeEE-eccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCc
Confidence 58999999999999999999875 2221 12233232222221 222 1489999999987554
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
....+...+...+ +.+|++++|+|+.
T Consensus 78 ~~~glg~~fL~~i----~~~D~li~VV~~f 103 (274)
T cd01900 78 KGEGLGNKFLSHI----REVDAIAHVVRCF 103 (274)
T ss_pred hhhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence 4445555555444 4569999999974
No 278
>PTZ00258 GTP-binding protein; Provisional
Probab=99.23 E-value=1e-10 Score=100.73 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=59.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLF 80 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~ 80 (277)
....+|+|||.+|+|||||+|+|++.... .+. ...+|...........+ ..++.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v~n-~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP-AEN-FPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCccc-ccC-CCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 35579999999999999999999987642 221 12233233222222111 2358999999998
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
........+...+...+ +.+|++++|+|..
T Consensus 97 ~ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred cCCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 65443444555555544 4569999999984
No 279
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.22 E-value=4.7e-11 Score=85.70 Aligned_cols=129 Identities=19% Similarity=0.166 Sum_probs=86.4
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
+-++++..++|+++|-.++|||||++.|.++++... .+|.-.....+......++++||.-|- +
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGq-----------r 73 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQ-----------R 73 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCc-----------c
Confidence 346678889999999999999999999998886222 223333333344334478999999883 3
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~ 160 (277)
.+..+...+|.++|.++||+|... ++........+++.+.-- ...|+.|.-||-|.+.. ...++.
T Consensus 74 ~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl--~~vpvlIfankQdllta--a~~eei 140 (185)
T KOG0074|consen 74 GIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKL--AEVPVLIFANKQDLLTA--AKVEEI 140 (185)
T ss_pred ccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhh--hccceeehhhhhHHHhh--cchHHH
Confidence 466677778899999999999662 222222333333333211 22489999999998866 555544
No 280
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.22 E-value=1.3e-09 Score=92.19 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHH-HHHHhCcCccCcEEEEEeC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHR-LPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ivv~nk 146 (277)
+..+.|+||+|...... . .. ..+|.++++.+.. ++.+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~~-------~---i~----~~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET-------A---VA----GMVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh-------H---HH----HhCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 46789999999885321 1 11 2359999997632 1233322221 2221 34899999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+|.... ......... ++..+.....+.... .+....|+.++.++++|++.|...++.
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 998765 333334333 444443322110001 122346778889999999999998874
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.20 E-value=9.3e-11 Score=110.17 Aligned_cols=119 Identities=18% Similarity=0.316 Sum_probs=76.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCC----------CCCcceeeEEEEEee-e--CCceEEEEeCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK----ASAG----------SSGVTKTCEMKTTVL-K--DGQVVNVIDTPGL 79 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~~----------~~~~t~~~~~~~~~~-~--~~~~~~liDtpG~ 79 (277)
.+.++|+++|+.++|||||+.+|+...-.. .|.. ..+.|.......... + .+..+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 355789999999999999999997322100 0000 012232222222211 1 3567899999998
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
.+. ..++..++ ..+|++++|+|+..+....+...+..+... +. |.++++||+|...
T Consensus 98 ~df-------~~~~~~~l----~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~~----~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDF-------GGDVTRAM----RAVDGAIVVVDAVEGVMPQTETVLRQALRE-RV----KPVLFINKVDRLI 153 (731)
T ss_pred cCh-------HHHHHHHH----HhcCEEEEEEECCCCCCccHHHHHHHHHHc-CC----CeEEEEECchhhc
Confidence 863 23344443 455999999999877777777777765443 32 6789999999763
No 282
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=7e-09 Score=86.46 Aligned_cols=131 Identities=17% Similarity=0.250 Sum_probs=84.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-----------------------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------------------- 67 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------------------- 67 (277)
..+.-|+++|+...||||||+.|+..+++...+++.+.|............
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 356789999999999999999999988764444444444333322100000
Q ss_pred ----------CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCc
Q 023779 68 ----------GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNV 136 (277)
Q Consensus 68 ----------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~ 136 (277)
-..+++|||||+.+.....-...-.+...+......+|.|++++|+. -.++.+-.+++..++- .+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG---~E- 211 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG---HE- 211 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC---Cc-
Confidence 03589999999987654321111123333333346779999999998 4444444565555543 23
Q ss_pred cCcEEEEEeCCCCCCc
Q 023779 137 FDYMIVVFTGGDDLED 152 (277)
Q Consensus 137 ~~~~ivv~nk~D~~~~ 152 (277)
..+-||+||.|+...
T Consensus 212 -dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 -DKIRVVLNKADQVDT 226 (532)
T ss_pred -ceeEEEeccccccCH
Confidence 268899999999877
No 283
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=3e-11 Score=90.17 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=97.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..++++++|..++||||+|.+.+...+ ..+ ......++.-...+. ...+..+.+|||.| .+++..
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgif-Tkd-ykktIgvdflerqi~v~~Edvr~mlWdtag-----------qeEfDa 84 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIF-TKD-YKKTIGVDFLERQIKVLIEDVRSMLWDTAG-----------QEEFDA 84 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccc-ccc-cccccchhhhhHHHHhhHHHHHHHHHHhcc-----------chhHHH
Confidence 3458999999999999999999984443 221 111111111111111 11234467999999 345666
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....+|+++.+.++|++.+.+.+.+- ..+-+.+..-++. .|.++|-||+|.+++ ..+..-. ...+..
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved--s~~~~~e-------vE~lak 152 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED--SQMDKGE-------VEGLAK 152 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh--hhcchHH-------HHHHHH
Confidence 66678999999999999987766554 3444555554443 399999999998876 2222111 223334
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..+.|.+. .|.+...++..++.++..-
T Consensus 153 ~l~~RlyR------tSvked~NV~~vF~YLaeK 179 (246)
T KOG4252|consen 153 KLHKRLYR------TSVKEDFNVMHVFAYLAEK 179 (246)
T ss_pred Hhhhhhhh------hhhhhhhhhHHHHHHHHHH
Confidence 44444442 3556666777766665443
No 284
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.4e-11 Score=88.93 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--EEEEeeeC------CceEEEEeCCCCCCCCCCchHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD------GQVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~------~~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
++.+.+|++|+|||||+...+...+-..-++..++..+.. ++...-.+ ..++.+|||.| ++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAG-----------QE 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAG-----------QE 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeecccc-----------HH
Confidence 5678899999999999988775543211122222221111 11110000 12578999999 34
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~ 169 (277)
++.......++.+-+||+++|+++.-+..+ ..|+..++-+. ..+ .-++++.||+|.... ..+.+- ..
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~--PDivlcGNK~DL~~~--R~Vs~~-------qa 147 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCEN--PDIVLCGNKADLEDQ--RVVSED-------QA 147 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCC--CCEEEEcCccchhhh--hhhhHH-------HH
Confidence 555555566788899999999984433333 44555554431 222 158889999996543 222211 14
Q ss_pred HHHHhhcCCeEEE
Q 023779 170 KEILQLCDNRCVL 182 (277)
Q Consensus 170 ~~~~~~~~~~~~~ 182 (277)
..+..+.+.+|+.
T Consensus 148 ~~La~kyglPYfE 160 (219)
T KOG0081|consen 148 AALADKYGLPYFE 160 (219)
T ss_pred HHHHHHhCCCeee
Confidence 4577788888875
No 285
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=5.1e-10 Score=95.42 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.|+..|+--.|||||+.+++|...-. ......+.|.+..++... ..+..+.|||.||+.+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~-~~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK-LEDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc-CCCCceEEeeCCCcHH-----------HHHHHHh
Confidence 58899999999999999999865311 123456788888887655 4556899999999664 3344444
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
.....|..++|+++..++...+.+.+..+.. +|-. +.+||+||+|.... ..+++.... ++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~---~giivltk~D~~d~--~r~e~~i~~--------Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIK---NGIIVLTKADRVDE--ARIEQKIKQ--------ILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCC---ceEEEEeccccccH--HHHHHHHHH--------HHhhcc--
Confidence 5567899999999977888888777666655 5654 78999999998866 555544433 333323
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..-.+....|+..+.++++|.+.|.++.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 2222334668888899999999999987
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.18 E-value=9.3e-10 Score=94.14 Aligned_cols=170 Identities=16% Similarity=0.314 Sum_probs=104.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-cccc-------------CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS-------------AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
-++|+||.+...|||||+..|+.+.. |... .-..+.|.-..-. ...|++..+.++||||.-|+.+
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnT-av~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNT-AVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccc-eeecCCeEEEEecCCCcCCccc
Confidence 37899999999999999999985431 1111 0011333322222 3448899999999999988755
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
+..+.+... |.+++++|+..+.-+..+..++...+. |- +.|||+||+|.... ..+..+..
T Consensus 84 -------EVERvl~MV----DgvlLlVDA~EGpMPQTrFVlkKAl~~-gL----~PIVVvNKiDrp~A---rp~~Vvd~- 143 (603)
T COG1217 84 -------EVERVLSMV----DGVLLLVDASEGPMPQTRFVLKKALAL-GL----KPIVVINKIDRPDA---RPDEVVDE- 143 (603)
T ss_pred -------hhhhhhhhc----ceEEEEEEcccCCCCchhhhHHHHHHc-CC----CcEEEEeCCCCCCC---CHHHHHHH-
Confidence 555555444 999999999966666676666655543 22 57889999997643 33333333
Q ss_pred CCchHHHHHhhcCC------eEEEEeC-CC----cccccChhHHHHHHHHHHHHHhhcCC
Q 023779 165 CPKPLKEILQLCDN------RCVLFDN-KT----KDEAKGTEQVRQLLSLVNSVIVQNGG 213 (277)
Q Consensus 165 ~~~~~~~~~~~~~~------~~~~~~~-~~----~~s~~~~~~~~~L~~~i~~~~~~~~~ 213 (277)
.-.+....+. ..++|.. .. ........++..|++.|.+.++...+
T Consensus 144 ----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 144 ----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred ----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 2223222231 1122211 11 11222335799999999999886543
No 287
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.17 E-value=2.9e-10 Score=97.48 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=110.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc-----------cc--cCCCCCcceeeEEEEEeee----CCceEEEEeCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-----------KA--SAGSSGVTKTCEMKTTVLK----DGQVVNVIDTPG 78 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~-----------~~--~~~~~~~t~~~~~~~~~~~----~~~~~~liDtpG 78 (277)
-.+.++..++.+-..|||||...|+..... ++ -.-..+.|...+....... +.+.+.+|||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345678999999999999999998642210 00 0111255655444433322 235689999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHH
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLE 158 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~ 158 (277)
..|+.. ++.+++.+| .+.|+|+|+++++...+....-+..+. +. -++-|+||+|+... ..+
T Consensus 86 HVDFsY-------EVSRSLAAC----EGalLvVDAsQGveAQTlAN~YlAle~---~L--eIiPViNKIDLP~A---dpe 146 (603)
T COG0481 86 HVDFSY-------EVSRSLAAC----EGALLVVDASQGVEAQTLANVYLALEN---NL--EIIPVLNKIDLPAA---DPE 146 (603)
T ss_pred ccceEE-------EehhhHhhC----CCcEEEEECccchHHHHHHHHHHHHHc---Cc--EEEEeeecccCCCC---CHH
Confidence 998653 566777666 788999999988877665554444443 22 58889999996543 444
Q ss_pred HHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCC
Q 023779 159 DFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQ 214 (277)
Q Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~ 214 (277)
....+ +..++..... ....+||+.+-|++++++.|...++...|.
T Consensus 147 rvk~e-----Ie~~iGid~~------dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 147 RVKQE-----IEDIIGIDAS------DAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HHHHH-----HHHHhCCCcc------hheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 44443 4444432211 222458999999999999999998865443
No 288
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.6e-10 Score=93.23 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=102.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEee-------------------------eCCceE
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVL-------------------------KDGQVV 71 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~-------------------------~~~~~~ 71 (277)
...+|+++|+...|||||..+|+|.-.-. +.....+.|.+.++..... .--+.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 34899999999999999999999854311 1111223333332221100 012468
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCH-HHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKC-LGMAKDGIHAFLVVFSVTNRFSQ-EEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~ 149 (277)
.|+|.||. +...+ +.+...-.|+.++|+.++.++-+ ..++.+- ..+.+|-. +++|+=||+|.
T Consensus 89 SfVDaPGH------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~-AleIigik---~iiIvQNKIDl 152 (415)
T COG5257 89 SFVDAPGH------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM-ALEIIGIK---NIIIVQNKIDL 152 (415)
T ss_pred EEeeCCch------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH-HHhhhccc---eEEEEecccce
Confidence 89999993 22222 22222345899999999844333 3333333 33445554 89999999998
Q ss_pred CCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 150 LEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
... +...+..++ ++++++. -+..-.+..+.||....|++.|++.|.+.++..
T Consensus 153 V~~--E~AlE~y~q-----Ik~FvkG---t~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 153 VSR--ERALENYEQ-----IKEFVKG---TVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ecH--HHHHHHHHH-----HHHHhcc---cccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 876 333322232 5555543 222222334678889999999999999998754
No 289
>PRK13768 GTPase; Provisional
Probab=99.16 E-value=2.8e-10 Score=93.52 Aligned_cols=132 Identities=18% Similarity=0.118 Sum_probs=71.6
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (277)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~ 149 (277)
.+.+|||||....... ......+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 5899999996543211 122333444443322 7999999999744455554443333311100112499999999998
Q ss_pred CCcccccHHHHhcccCC-------------------chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 150 LEDHEKTLEDFLGHECP-------------------KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 150 ~~~~~~~l~~~l~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
... ...+.....-.. ..+-+.+...+..+ .....|+..+.++++|++.|.+.++.
T Consensus 175 ~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~----~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSE--EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPV----RVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCc--hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCC----cEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 866 333332221000 00111223333211 11234666778999999999988753
No 290
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=1.5e-09 Score=77.91 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+.+|-.++||||++..|.-... ....+|+-..+..+ .+.+..+.+||.-|- ..+....
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetV-tykN~kfNvwdvGGq-----------d~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETV-TYKNVKFNVWDVGGQ-----------DKIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEE-EeeeeEEeeeeccCc-----------hhhhHHH
Confidence 458999999999999999998873221 11233444444443 478888999999883 3577777
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCcc--CcEEEEEeCCCCCCc-ccccHHHHhcccCCchHHHHHh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF--DYMIVVFTGGDDLED-HEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~--~~~ivv~nk~D~~~~-~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
..+|++..+++||+|...+ ...+... +.+...++.+.+ -+++|+.||-|.... ....+.++++ +. .
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~eeAr-~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~le------Le---~ 147 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRIEEAR-NELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLE------LE---R 147 (180)
T ss_pred HhhccCCceEEEEEeccch-hhHHHHH-HHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhc------cc---c
Confidence 8889999999999998844 2233222 223333332211 267788899997654 1133334433 11 1
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.-+.++++. ++++..++++.+=+.++.+.+
T Consensus 148 ~r~~~W~vq----p~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 148 IRDRNWYVQ----PSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccCCccEee----ccccccchhHHHHHHHHHhhc
Confidence 123445442 334445566666666665543
No 291
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.14 E-value=4.7e-11 Score=84.81 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=95.6
Q ss_pred EEcCCCCcHHHHHHHHhCCCCcccc--CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcC
Q 023779 24 LLGRTGNGKSATGNSILGRKAFKAS--AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAK 101 (277)
Q Consensus 24 lvG~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 101 (277)
++|.+++|||.|+=..-... |..+ ++..+...+....... .....+.+|||.| ++++......+|
T Consensus 2 llgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~-~~kvklqiwdtag-----------qerfrsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAG-----------QERFRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccC-CcEEEEEEeeccc-----------hHHHhhhhHhhh
Confidence 78999999999875543222 2222 2222222222222211 1223588999999 345555556678
Q ss_pred CCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779 102 DGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (277)
Q Consensus 102 ~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (277)
+.+|++++++|+.++.+... ..|+..+.+.....+ .++++.||+|.... ..+... .-+.+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~e------r~v~~d---dg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHE------RAVKRD---DGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchh------hccccc---hHHHHHHHHCCCc
Confidence 99999999999997666655 566667776554444 68899999997643 111110 1223334444333
Q ss_pred EEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 181 VLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 181 ~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
. +.|++.+.+++..+-.|..-+..
T Consensus 138 m------etsaktg~nvd~af~~ia~~l~k 161 (192)
T KOG0083|consen 138 M------ETSAKTGFNVDLAFLAIAEELKK 161 (192)
T ss_pred e------eccccccccHhHHHHHHHHHHHH
Confidence 3 56888889998877776655443
No 292
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.10 E-value=4.4e-09 Score=84.93 Aligned_cols=94 Identities=20% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC-CCccccCCCCCcceeeEEEEEeee--CCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR-KAFKASAGSSGVTKTCEMKTTVLK--DGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+-..|+|+|++++|||||+|.|+|. ..|..+.....+|...-....... .+..+.++||||+++...........+.
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3478999999999999999999987 356555444444443332222111 3577999999999987664411111122
Q ss_pred HHHhhcCCCccEEEEEEeCC
Q 023779 95 KCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~ 114 (277)
..... -.++++|..+..
T Consensus 86 ~l~~l---lss~~i~n~~~~ 102 (224)
T cd01851 86 ALATL---LSSVLIYNSWET 102 (224)
T ss_pred HHHHH---HhCEEEEeccCc
Confidence 11111 238888887765
No 293
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.8e-10 Score=84.78 Aligned_cols=165 Identities=17% Similarity=0.134 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc-C--CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS-A--GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~-~--~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..|+|+|.-++|||||+.++-....-..+ . +...+|+.....++. .....+.+||.-| ++..++
T Consensus 18 y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgG------------Qe~lrS 84 (197)
T KOG0076|consen 18 YSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGG------------QESLRS 84 (197)
T ss_pred hhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCC------------hHHHHH
Confidence 67999999999999999876432211111 1 222334434434333 4577899999888 233333
Q ss_pred H-hhcCCCccEEEEEEeCCC--CCCHHHHHHHHHHHHH-hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 97 L-GMAKDGIHAFLVVFSVTN--RFSQEEETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 97 ~-~~~~~~~~~~l~v~d~~~--~~~~~~~~~~~~l~~~-~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
+ ..+|..+|+++|++|+.. ++... ...++.+... .-.++ |++++.||-|+... ....+.-.. +. .
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg~--p~L~lankqd~q~~--~~~~El~~~-----~~-~ 153 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEGA--PVLVLANKQDLQNA--MEAAELDGV-----FG-L 153 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcCC--chhhhcchhhhhhh--hhHHHHHHH-----hh-h
Confidence 3 345677899999999983 33222 2222322211 11222 99999999997665 444433322 22 2
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.+..+.|...|.+ .|+..+.++.+-..++...++.+
T Consensus 154 ~e~~~~rd~~~~p---vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 154 AELIPRRDNPFQP---VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcCCccCcccc---chhhhcccHHHHHHHHHHHHhhc
Confidence 3444555555544 47777888898888888887765
No 294
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.09 E-value=5.2e-09 Score=91.24 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--------------------------------
Q 023779 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------------------------- 52 (277)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------------------------- 52 (277)
.++.+|.+.... ++|++||+-.+||||.+.+|.....|+.|.+..
T Consensus 297 ~YD~sYnt~DhL---PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE 373 (980)
T KOG0447|consen 297 DYDASYNTQDHL---PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKE 373 (980)
T ss_pred cccccccccccC---ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccch
Confidence 356666555544 899999999999999999998877777663321
Q ss_pred --------------------CcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCc--hHHHHHHHHHHhhcCCCccEE
Q 023779 53 --------------------GVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS--EFVGKEIVKCLGMAKDGIHAF 107 (277)
Q Consensus 53 --------------------~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 107 (277)
+.|+...+.... ..| ..++++|.||...+...+ .+....+......+..+|++|
T Consensus 374 ~DLq~LR~e~E~RMr~sVr~GkTVSnEvIslt-VKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI 452 (980)
T KOG0447|consen 374 EDLAALRHEIELRMRKNVKEGCTVSPETISLN-VKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI 452 (980)
T ss_pred hHHHHHHHHHHHHHHhcccCCcccccceEEEe-ecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 444444443332 222 357899999998766543 334556666667778899999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 108 LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 108 l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
++|+.-. ....+-...-.++..+ . +.-+..|+|+||+|+.+.
T Consensus 453 ILCIQDG-SVDAERSnVTDLVsq~-D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 453 ILCIQDG-SVDAERSIVTDLVSQM-D-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred EEEeccC-CcchhhhhHHHHHHhc-C-CCCCeeEEEEeecchhhh
Confidence 9998876 5544433333344433 1 122479999999998765
No 295
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.08 E-value=2e-09 Score=89.17 Aligned_cols=141 Identities=12% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC--cc---------c---cCC-----------------CCCcceeeEEEEEee
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FK---------A---SAG-----------------SSGVTKTCEMKTTVL 65 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~--~~---------~---~~~-----------------~~~~t~~~~~~~~~~ 65 (277)
...++.+-+|...-||||||-.|+-... +. + +.. ..+.|.+..+..+.
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs- 82 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS- 82 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc-
Confidence 3458999999999999999999873321 00 0 000 01667666665444
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
-..+.+.+.||||.. ++.+-+.....-+|+.++++|+..++-...++ -..+..++|-. ++++.+|
T Consensus 83 T~KRkFIiADTPGHe-----------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR-Hs~I~sLLGIr---hvvvAVN 147 (431)
T COG2895 83 TEKRKFIIADTPGHE-----------QYTRNMATGASTADLAILLVDARKGVLEQTRR-HSFIASLLGIR---HVVVAVN 147 (431)
T ss_pred cccceEEEecCCcHH-----------HHhhhhhcccccccEEEEEEecchhhHHHhHH-HHHHHHHhCCc---EEEEEEe
Confidence 467789999999943 44444444455679999999998555444433 35666667765 8999999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
|+|+..=..+.++.+... +..+.+..+.
T Consensus 148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~ 175 (431)
T COG2895 148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGL 175 (431)
T ss_pred eecccccCHHHHHHHHHH-----HHHHHHHcCC
Confidence 999886444677777776 7777777774
No 296
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.08 E-value=3.9e-10 Score=92.29 Aligned_cols=161 Identities=19% Similarity=0.175 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
...|++||-+|+||||||++|++....+...-. .|.+..........|..+.+.||.||.+.- +-.+...|...+.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLF--ATLDpT~h~a~Lpsg~~vlltDTvGFisdL--P~~LvaAF~ATLe 253 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLF--ATLDPTLHSAHLPSGNFVLLTDTVGFISDL--PIQLVAAFQATLE 253 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhh--eeccchhhhccCCCCcEEEEeechhhhhhC--cHHHHHHHHHHHH
Confidence 378999999999999999999977664443211 121111111223578889999999998521 1222222332222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC---ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN---VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~---~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
-...+|+++.|+|++++..... ...+..+..+ |-. ....++=|=||.|..+. ++.. +
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~-------~~e~----------E 314 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEED-------EVEE----------E 314 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccc-------cCcc----------c
Confidence 1356799999999995544444 4556666654 321 11234455677774433 2222 0
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
. ++....|+.++.+++++++.+...+..
T Consensus 315 ~--------n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 K--------NLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred c--------CCccccccccCccHHHHHHHHHHHhhh
Confidence 0 112245788889999999998877653
No 297
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.06 E-value=5e-10 Score=85.55 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
...+|+++|.+|+|||||+|+|.+......+..+ +.|...... ..+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~----~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYI----TLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEE----EcCCCEEEEECcCC
Confidence 3478999999999999999999987764444322 233333222 12345889999995
No 298
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1e-08 Score=86.31 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=60.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE--EE---------------eeeCCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK--TT---------------VLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~---------------~~~~~~~~~liDtpG~~~ 81 (277)
.++++|||.||||||||+|+|+.... ..... +-+|...... .. ...-...+.|+|.+|+-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a-~~aNY-PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA-EIANY-PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc-cccCC-CcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 37899999999999999999997663 21111 1122221111 10 001112478999999987
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
.....+-++.++...++ .+|+++.|++..
T Consensus 80 GAs~GeGLGNkFL~~IR----evdaI~hVVr~f 108 (372)
T COG0012 80 GASKGEGLGNKFLDNIR----EVDAIIHVVRCF 108 (372)
T ss_pred CcccCCCcchHHHHhhh----hcCeEEEEEEec
Confidence 77666777777777765 559999999987
No 299
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1e-09 Score=96.64 Aligned_cols=213 Identities=16% Similarity=0.186 Sum_probs=129.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC--------------------CCcceeeEEEEEeeeCCceEEE
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS--------------------SGVTKTCEMKTTVLKDGQVVNV 73 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--------------------~~~t~~~~~~~~~~~~~~~~~l 73 (277)
.|.++-++|+++.+-.+||||+-+.++- ..|.+. .+.|....... ..|....+.+
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Ly----y~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~-~~w~~~~iNi 108 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLY----YTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATY-FTWRDYRINI 108 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeee----ecceeeeccccccCceeeehHHHHHhcCceeeeceee-eeeccceeEE
Confidence 3445678999999999999999988762 121111 14444444443 4478899999
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
|||||..|+.. ++.+++. -.|+.++|+++-.+........++.++.. +. |.+..+||+|..+.
T Consensus 109 IDTPGHvDFT~-------EVeRALr----VlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-~v----P~i~FiNKmDRmGa- 171 (721)
T KOG0465|consen 109 IDTPGHVDFTF-------EVERALR----VLDGAVLVLDAVAGVESQTETVWRQMKRY-NV----PRICFINKMDRMGA- 171 (721)
T ss_pred ecCCCceeEEE-------Eehhhhh----hccCeEEEEEcccceehhhHHHHHHHHhc-CC----CeEEEEehhhhcCC-
Confidence 99999987543 3444443 33887888887767777777777777764 33 89999999998876
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh-hcCC----CCCChHHHHHHHHHH
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV-QNGG----QPYTDELKRGATELR 228 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~ 228 (277)
..-.. +..+..+....-.+++-+..... ...++-+|++...-... ++++ ...+.++.+.+.+.
T Consensus 172 --~~~~~--------l~~i~~kl~~~~a~vqiPig~e~-~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~- 239 (721)
T KOG0465|consen 172 --SPFRT--------LNQIRTKLNHKPAVVQIPIGSES-NFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEK- 239 (721)
T ss_pred --ChHHH--------HHHHHhhcCCchheeEccccccc-cchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHH-
Confidence 11122 33344444444444444433221 23344444332211111 1111 12466677777766
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023779 229 DKKAEVDSLKEYSKREISKLMGQMQESYEDRIK 261 (277)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (277)
+++.++.+.+.+++..+.+.++.+-+..+..+
T Consensus 240 -R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~ 271 (721)
T KOG0465|consen 240 -RQALIETLADVDETLAEMFLEEEEPSAQQLKA 271 (721)
T ss_pred -HHHHHHHHhhhhHHHHHHHhccCCCCHHHHHH
Confidence 77778878777777777777766654433333
No 300
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.05 E-value=1.8e-10 Score=86.94 Aligned_cols=63 Identities=33% Similarity=0.379 Sum_probs=36.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccC-----CCCCccee-eEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-----GSSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-----~~~~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (277)
..+++|+|++|||||||+|+|++......+. .....|++ ..... . .....|||||||.+....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~---l-~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFP---L-PDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEE---E-TTSEEEECSHHHHT--GC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEe---c-CCCcEEEECCCCCccccc
Confidence 3789999999999999999999875444331 12223333 33222 2 234679999998776543
No 301
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=6.9e-09 Score=90.87 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=96.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc-ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFK-ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+++..|+++||+|+||||||.+|.....-. ......+.| +.....+.++++.+|. | ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT-------vvsgK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT-------VVSGKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE-------EeecceeEEEEEeChH--H--------HHHHH
Confidence 3455889999999999999999998543211 111112222 2234557799999994 1 12333
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
.... -+|++|+++|..-++.-+...++.++..+ |-+ .++-|+||.|....+ ..+......-...+| .+
T Consensus 129 DvaK----IaDLVlLlIdgnfGfEMETmEFLnil~~H-GmP---rvlgV~ThlDlfk~~-stLr~~KKrlkhRfW---tE 196 (1077)
T COG5192 129 DVAK----IADLVLLLIDGNFGFEMETMEFLNILISH-GMP---RVLGVVTHLDLFKNP-STLRSIKKRLKHRFW---TE 196 (1077)
T ss_pred hHHH----hhheeEEEeccccCceehHHHHHHHHhhc-CCC---ceEEEEeecccccCh-HHHHHHHHHHhhhHH---HH
Confidence 3333 34999999999877877788888888875 443 688899999988652 445444433111222 23
Q ss_pred hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.|. ...+.+... .........+-.|-..|.-|
T Consensus 197 iyqGaKlFylsgV-~nGRYpDreilnLsRfisVM 229 (1077)
T COG5192 197 IYQGAKLFYLSGV-ENGRYPDREILNLSRFISVM 229 (1077)
T ss_pred HcCCceEEEeccc-ccCCCCCHHHHHHHHHHhhh
Confidence 333 444443322 22333334555555555544
No 302
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.5e-09 Score=93.04 Aligned_cols=142 Identities=20% Similarity=0.301 Sum_probs=94.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCC-----------cccc---------------CCCCCcceeeEEEEEee
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSIL---GRKA-----------FKAS---------------AGSSGVTKTCEMKTTVL 65 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~---~~~~-----------~~~~---------------~~~~~~t~~~~~~~~~~ 65 (277)
+....+..+++|+..+|||||+..|+ |..- ...| ....+.|.......+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe- 251 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE- 251 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe-
Confidence 33456899999999999999998875 2110 0011 1112677777666665
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCC----C--HHHHHHHHHHHHHhCcCccC
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF----S--QEEETAVHRLPNLFGKNVFD 138 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~----~--~~~~~~~~~l~~~~~~~~~~ 138 (277)
-....++|+|+||.-++. ..++ .....+|+.++|+|++ ..| . +..+.....++. +|..
T Consensus 252 s~~~~~tliDaPGhkdFi----------~nmi-~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~-Lgi~--- 316 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFI----------PNMI-SGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS-LGIS--- 316 (603)
T ss_pred cCceeEEEecCCCccccc----------hhhh-ccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH-cCcc---
Confidence 466789999999966532 2222 2335679999999998 322 2 122444444444 5643
Q ss_pred cEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH-hhcC
Q 023779 139 YMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCD 177 (277)
Q Consensus 139 ~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~ 177 (277)
.+||++||+|...-....++++... +..++ +.||
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 8999999999987654778887777 88877 7777
No 303
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.02 E-value=3.2e-09 Score=85.29 Aligned_cols=127 Identities=19% Similarity=0.223 Sum_probs=80.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+....++++|.+|+|||||+|.++..... .++.+..+.|....-+ .-+..++++|.||++-.... .++.+++.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~-~~~~~d~~ 207 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYG-FELPADWD 207 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCC-ccCcchHh
Confidence 455589999999999999999999865532 1222233334333222 34678999999995432211 11122222
Q ss_pred HHHhhc---CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 95 KCLGMA---KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 95 ~~~~~~---~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
.+...+ ....-.+++++|++-++...|...++|+.+. .+ |+.+|+||+|...+
T Consensus 208 ~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~V--P~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 208 KFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---NV--PMTSVFTKCDKQKK 263 (320)
T ss_pred HhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc---CC--CeEEeeehhhhhhh
Confidence 222222 2233456677777768888888888888875 33 89999999997744
No 304
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.01 E-value=1e-09 Score=84.76 Aligned_cols=57 Identities=32% Similarity=0.391 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
...+|+++|.+|+|||||+|+|+|......+.. .+.|....... .+..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~----~~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH----LDKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE----eCCCEEEEECcCC
Confidence 347999999999999999999999876555432 33444333222 2356889999995
No 305
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=7.2e-09 Score=83.92 Aligned_cols=173 Identities=16% Similarity=0.237 Sum_probs=100.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCC---------cccc-----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKA---------FKAS-----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~---------~~~~-----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
+.+..+|+.||+...|||||..+|++.-. +... .-..+.|....-.... ...+++-.+|+||.-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveye-t~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEe-cCCceEEeccCCChHH
Confidence 34458999999999999999999874211 0000 0112344433222222 3567899999999654
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l 161 (277)
.+.+.+. .....|..++|+.+..+-.+..+..+-+.++ .|-+ .+++++||+|+..+ ..+-+.+
T Consensus 88 ----------YvKNMIt-gAaqmDgAILVVsA~dGpmPqTrEHiLlarq-vGvp---~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 ----------YVKNMIT-GAAQMDGAILVVAATDGPMPQTREHILLARQ-VGVP---YIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred ----------HHHHHhh-hHHhcCccEEEEEcCCCCCCcchhhhhhhhh-cCCc---EEEEEEecccccCc--HHHHHHH
Confidence 2222222 2235588899998885555566555444444 3543 67788999999986 5555555
Q ss_pred cccCCchHHHHHhhcCC---eEEEEeCCCc----ccccChhHHHHHHHHHHHHHhh
Q 023779 162 GHECPKPLKEILQLCDN---RCVLFDNKTK----DEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+. ..++++...+- ..-.+..... ..+.-...+.+|++.++.+++.
T Consensus 151 em----EvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 44 27778877652 1111111100 0111124567777777777664
No 306
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=7.9e-09 Score=87.98 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh--CCCCccccCCC------------------CCcceeeEEEEEeeeCCceEEEEeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL--GRKAFKASAGS------------------SGVTKTCEMKTTVLKDGQVVNVIDTP 77 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~--~~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~~~liDtp 77 (277)
+.++.+||.++.+|||||-..|+ |......|... .++++...+..+. |.++.++|+|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~-Y~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFD-YADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEec-cCCeEEeccCCC
Confidence 34789999999999999997764 33332222111 1455555555544 889999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|..|++. ...+.+. -+|..+.|+|+..++.......++. +.+-+- |++-.+||+|....
T Consensus 90 GHeDFSE-------DTYRtLt----AvDsAvMVIDaAKGiE~qT~KLfeV-crlR~i----PI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSE-------DTYRTLT----AVDSAVMVIDAAKGIEPQTLKLFEV-CRLRDI----PIFTFINKLDREGR 148 (528)
T ss_pred Cccccch-------hHHHHHH----hhheeeEEEecccCccHHHHHHHHH-HhhcCC----ceEEEeeccccccC
Confidence 9988643 2223332 2399999999987777776665543 333233 99999999998766
No 307
>PTZ00099 rab6; Provisional
Probab=99.00 E-value=1.4e-08 Score=79.04 Aligned_cols=114 Identities=19% Similarity=0.149 Sum_probs=71.3
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
..+.||||||.. .+......++.++|++|+|+|++.+.+... ..++..+....+.. .|++||+||+
T Consensus 29 v~l~iwDt~G~e-----------~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQE-----------RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChH-----------HhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence 458899999943 333344456789999999999984333222 23444444433333 3889999999
Q ss_pred CCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 148 DDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
|.........++ ...+....+..++ ++|++.+.++.++++.|.+.++.
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~------e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFH------ETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 975320011111 1222333333332 56888999999999999988865
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.97 E-value=6e-08 Score=81.92 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....|+|+|++|+|||||++.|.+
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999764
No 309
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=1.4e-07 Score=76.03 Aligned_cols=136 Identities=17% Similarity=0.212 Sum_probs=82.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEE--EEEe-eeCCceEEEEeCCCCCCCCCCch-------
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEM--KTTV-LKDGQVVNVIDTPGLFDLSAGSE------- 87 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~--~~~~-~~~~~~~~liDtpG~~~~~~~~~------- 87 (277)
..+|+-||.+|.|||||+.+|++..+ .+.++ ..-+++.... +... +.-.-.++++||.||+|-...++
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 37899999999999999999997764 22222 2222222221 1111 00123589999999998654332
Q ss_pred HHHHHHHHHH----------hh-cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccc
Q 023779 88 FVGKEIVKCL----------GM-AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEK 155 (277)
Q Consensus 88 ~~~~~~~~~~----------~~-~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~ 155 (277)
.+..++..++ .. ....+|+.||.+..+ +++...+...++.+.. . .++|-|+-|.|.+.. .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds----k--VNIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS----K--VNIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh----h--hhhHHHHHHhhhhhH--H
Confidence 1222222222 11 135689999998887 5666666555444433 2 278888899998877 5
Q ss_pred cHHHHhcc
Q 023779 156 TLEDFLGH 163 (277)
Q Consensus 156 ~l~~~l~~ 163 (277)
.+..|...
T Consensus 193 eL~~FK~k 200 (406)
T KOG3859|consen 193 ELKRFKIK 200 (406)
T ss_pred HHHHHHHH
Confidence 66555444
No 310
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=3.5e-08 Score=81.72 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=97.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC---Ccccc--CCCCCcceeeEEEEEeeeCC--------ceEEEEeCCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK---AFKAS--AGSSGVTKTCEMKTTVLKDG--------QVVNVIDTPGLFDLSAG 85 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~---~~~~~--~~~~~~t~~~~~~~~~~~~~--------~~~~liDtpG~~~~~~~ 85 (277)
..+++++|+..+|||||..+|.... .|+.. ....+.|.+.+........+ -+++++|+||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 3899999999999999999996322 12211 11234444444443332222 3469999999543
Q ss_pred chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc--cccHHHHhcc
Q 023779 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH--EKTLEDFLGH 163 (277)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~--~~~l~~~l~~ 163 (277)
+.+.+.....-.|..++|+|+..+......+.+-.-... .+ ..+||+||.|....+ ...++..-..
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-c~----klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-CK----KLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-cc----ceEEEEeccccccchhhhhHHHHHHHH
Confidence 333333334556999999999855555554444333333 33 689999999987541 1233333332
Q ss_pred cCCchHHHHHhhcC----CeEEEEeCCCcccccCh----hHHHHHHHHHHHHHhh
Q 023779 164 ECPKPLKEILQLCD----NRCVLFDNKTKDEAKGT----EQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 164 ~~~~~~~~~~~~~~----~~~~~~~~~~~~s~~~~----~~~~~L~~~i~~~~~~ 210 (277)
+++-++..+ .+++. .|+..+ ..+.+|.+.+...+.+
T Consensus 151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhcC
Confidence 444445443 22332 233334 7788888888776643
No 311
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=2.5e-09 Score=80.14 Aligned_cols=59 Identities=31% Similarity=0.463 Sum_probs=39.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
....+++++|.+|+|||||+|+|++........ ..+.|..... .. .+ ..+.+|||||+.
T Consensus 81 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~--~~-~~-~~~~i~DtpG~~ 139 (141)
T cd01857 81 KENATIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQT--IF-LT-PTITLCDCPGLV 139 (141)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEE--EE-eC-CCEEEEECCCcC
Confidence 333489999999999999999999877543222 2233333222 11 22 368999999986
No 312
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.95 E-value=1.3e-08 Score=97.39 Aligned_cols=103 Identities=15% Similarity=0.107 Sum_probs=71.6
Q ss_pred cHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 31 GKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 31 GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
+||||+.+|.+..+... -..+.|...+.+.+..... ..+.||||||..+ +
T Consensus 473 ~KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~-----------F 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA-----------F 539 (1049)
T ss_pred ccccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH-----------H
Confidence 39999999998887433 2456677766655432111 1279999999543 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
.......+..+|++++|+|++.++...+...+..+... + .|+++++||+|...
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~-~----iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY-K----TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc-C----CCEEEEEECCCCcc
Confidence 22223345678999999999877777777777766653 3 28999999999763
No 313
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.94 E-value=3.6e-07 Score=79.79 Aligned_cols=123 Identities=15% Similarity=0.184 Sum_probs=71.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCCccc--cCCCC---------CcceeeEEEEEee---------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKA--SAGSS---------GVTKTCEMKTTVL--------------- 65 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~--~~~~~---------~~t~~~~~~~~~~--------------- 65 (277)
++..|+++|++|+||||++..|. |..+.-. ..... .......++....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 34789999999999999999986 3332111 01000 0000011111000
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
..+..+.||||||... .+..+..++...... ..++.+++|+|+..+ .......+.+.+.. .+.-+|+
T Consensus 179 ~~~~~DvViIDTaGr~~---~d~~lm~El~~i~~~--~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~Il 246 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHK---QEDSLFEEMLQVAEA--IQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVII 246 (429)
T ss_pred HhCCCCEEEEECCCCCc---chHHHHHHHHHHhhh--cCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEE
Confidence 0256789999999764 344555566655433 367899999998632 22233334443322 2678999
Q ss_pred eCCCCCCc
Q 023779 145 TGGDDLED 152 (277)
Q Consensus 145 nk~D~~~~ 152 (277)
||+|....
T Consensus 247 TKlD~~ar 254 (429)
T TIGR01425 247 TKLDGHAK 254 (429)
T ss_pred ECccCCCC
Confidence 99997755
No 314
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=6.4e-09 Score=87.93 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=101.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC--CccccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK--AFKASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
+-++|+++.+..+||||.-..|+--. .-..|.. ..+.|.......+ .|.|+.+.+|||||..|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~f-dwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNF-DWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeec-ccccceEeeecCCCcce
Confidence 44789999999999999998875111 0001111 1245555544444 48999999999999988
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l 161 (277)
+.. ++.+++.-. |+++.|+|++.+........|+...+. . .|.++.+||+|+... .++..
T Consensus 115 f~l-------everclrvl----dgavav~dasagve~qtltvwrqadk~-~----ip~~~finkmdk~~a---nfe~a- 174 (753)
T KOG0464|consen 115 FRL-------EVERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADKF-K----IPAHCFINKMDKLAA---NFENA- 174 (753)
T ss_pred EEE-------EHHHHHHHh----cCeEEEEeccCCcccceeeeehhcccc-C----Cchhhhhhhhhhhhh---hhhhH-
Confidence 643 455555433 999999999988777776666655442 2 388999999998765 33333
Q ss_pred cccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHH
Q 023779 162 GHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLL 201 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~ 201 (277)
...+-++.+.+.+.+.-+.....--+.++-+++
T Consensus 175 -------vdsi~ekl~ak~l~l~lpi~eak~fnkg~ldil 207 (753)
T KOG0464|consen 175 -------VDSIEEKLGAKALKLQLPIGEAKGFNKGFLDIL 207 (753)
T ss_pred -------HHHHHHHhCCceEEEEecccccccccchHHHHH
Confidence 445557778777666655543322224444444
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.92 E-value=1.8e-09 Score=85.15 Aligned_cols=57 Identities=28% Similarity=0.326 Sum_probs=37.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
..+++++|.+|+|||||+|+|++..... ...+.. +.|........ +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~----~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPL----GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEec----CCCCEEEeCcCC
Confidence 4689999999999999999999865322 122222 33333322222 225799999996
No 316
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.92 E-value=3.6e-09 Score=80.59 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=39.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
...+++++|.+|+|||||+|+|++......+. ...|+..... . ..+..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~--~~~~t~~~~~-~--~~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGN--VPGTTTSQQE-V--KLDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccC--CCCcccceEE-E--EecCCEEEEECCCC
Confidence 45889999999999999999999876533322 2233333222 1 12356899999995
No 317
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.91 E-value=2e-08 Score=79.64 Aligned_cols=88 Identities=20% Similarity=0.265 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
-+|+++|.+.+|||||+..|+... +.......|+-.-......+++-.+.++|.||+........-..+ .+.+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~---SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGR----Qvia 135 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH---SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGR----QVIA 135 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch---hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCc----eEEE
Confidence 799999999999999999998643 222222333332233344589999999999999765432222111 2223
Q ss_pred cCCCccEEEEEEeCC
Q 023779 100 AKDGIHAFLVVFSVT 114 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~ 114 (277)
..+.+|++|.|+|++
T Consensus 136 vArtaDlilMvLDat 150 (364)
T KOG1486|consen 136 VARTADLILMVLDAT 150 (364)
T ss_pred EeecccEEEEEecCC
Confidence 346679999999997
No 318
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.90 E-value=9.2e-09 Score=86.29 Aligned_cols=66 Identities=27% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (277)
...+|+++|.+|+|||||+|+|++......+. ..+.|...... .-+..+.++||||+..+...+.+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~----~~~~~~~l~DtPGi~~~~~~~~~ 185 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWI----KLGKGLELLDTPGILWPKLEDQE 185 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEE----EeCCcEEEEECCCcCCCCCCcHH
Confidence 45799999999999999999999987644432 22344443322 22456889999999876544433
No 319
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=3.2e-09 Score=76.64 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
+...+|.++|--|+||||.+-.+--.++. ...+|....+..+ .+.+-.+.+||.-|-. .+.-.
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevv-----ttkPtigfnve~v-~yKNLk~~vwdLggqt-----------SirPy 78 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVV-----TTKPTIGFNVETV-PYKNLKFQVWDLGGQT-----------SIRPY 78 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccc-----ccCCCCCcCcccc-ccccccceeeEccCcc-----------cccHH
Confidence 35689999999999999988665422211 1122222333322 3577789999988844 35566
Q ss_pred HhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...+|.+.|+++||+|.+ .+++.....+..++++---... .++|+.||.|.... ....+.+.. ..++++
T Consensus 79 WRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a--~llv~anKqD~~~~--~t~~E~~~~---L~l~~L-- 149 (182)
T KOG0072|consen 79 WRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHA--KLLVFANKQDYSGA--LTRSEVLKM---LGLQKL-- 149 (182)
T ss_pred HHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCc--eEEEEeccccchhh--hhHHHHHHH---hChHHH--
Confidence 666788899999999998 3455444555555554322222 57788999998766 344443332 002222
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+|...+ ...||-.+.+++..++++.+-+..
T Consensus 150 --k~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 150 --KDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred --hhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence 2333221 234777789999999999887754
No 320
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.4e-08 Score=77.26 Aligned_cols=118 Identities=14% Similarity=0.167 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
..|+++|++++|||+|+-.|.-......- .+.......+ .+....+.+||.||... +...+...+..
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~---r~gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATY---RLGSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeE---eecCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 67999999999999999877633221110 1111111111 13444589999999552 33444444332
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHH----HHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVH----RLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~----~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
. ..+-+++||+|.. -+...-+..-+ .+....+..-..|++|+-||.|....
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2 3678999999987 44333333333 33333111122389999999998755
No 321
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.88 E-value=1.3e-09 Score=97.81 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=33.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEE
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEM 60 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~ 60 (277)
..+-+|+|||++|+|||||++.|+|...+..|........+..+
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~ 70 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGY 70 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEE
Confidence 35589999999999999999999999877776433333333333
No 322
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.87 E-value=4.7e-08 Score=71.43 Aligned_cols=119 Identities=21% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCCCccccCCCCCcceee-EEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL-GRKAFKASAGSSGVTKTC-EMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~-~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
+..+|+++|--++|||+++..|+ |...+ +. ...+|... -...+.+..+ ..+.|.||.|+.+.. .++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~--~~-e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~-------~eL 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVP--GT-ELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQ-------QEL 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCC--CC-ccccchhhheeEeeecCCChhheEEEeecccccCch-------hhh
Confidence 34789999999999999998776 43332 21 22333332 2223332222 458999999988631 122
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH---hCcCccCcEEEEEeCCCCCCc
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL---FGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~---~~~~~~~~~ivv~nk~D~~~~ 152 (277)
-+. ++.-+|+|++|++..+ .+....++.+++- +......|++|+.|+.|..+.
T Consensus 78 prh---y~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 PRH---YFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hHh---HhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 222 3455699999999762 2333333433332 233334599999999998655
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.87 E-value=9.8e-09 Score=80.98 Aligned_cols=73 Identities=25% Similarity=0.201 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.||||||... .+.....++...+... .++-+++|++++.. ..+...+....+.++ +-=+++||.
T Consensus 83 ~~D~vlIDT~Gr~~---~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~-----~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSP---RDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFG-----IDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSS---THHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred CCCEEEEecCCcch---hhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhccc-----CceEEEEee
Confidence 35689999999875 2344455666655544 56889999998722 233333333434333 345779999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 97755
No 324
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.86 E-value=8.3e-09 Score=79.93 Aligned_cols=59 Identities=27% Similarity=0.381 Sum_probs=40.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
+...+++++|.+|+|||||+|.|++......+. ..+.|....... .. ..+.++||||++
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~T~~~~~~~---~~-~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGN-KPGVTKGIQWIK---IS-PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCEEeeeEEEE---ec-CCEEEEECCCCC
Confidence 345789999999999999999999876532221 223333333222 22 568899999974
No 325
>PRK12288 GTPase RsgA; Reviewed
Probab=98.85 E-value=9.9e-09 Score=87.84 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=41.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce-eeEEEEEeeeCCceEEEEeCCCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLSAG 85 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 85 (277)
..++|+|.+|||||||||+|++.....++..+. ..|+ ....+.. ..+ ..|+||||+-.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l--~~~--~~liDTPGir~~~l~ 273 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF--PHG--GDLIDSPGVREFGLW 273 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--cCC--CEEEECCCCCcccCC
Confidence 458999999999999999999887655443221 2333 3333332 122 359999999876543
No 326
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.84 E-value=1.9e-08 Score=83.89 Aligned_cols=62 Identities=26% Similarity=0.326 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
...+++++|.+|+|||||+|+|++......+.. .+.|....... . +..+.++||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~---~-~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIK---L-SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEE---e-CCCEEEEECCCcccCCC
Confidence 457899999999999999999998775444332 23343333221 2 34688999999976543
No 327
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=83.34 Aligned_cols=63 Identities=32% Similarity=0.332 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-----CCCccee-eEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG-----SSGVTKT-CEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
.+...+++|++|||||||+|+|.+......+.. ....|++ ...++. . ....|+|||||.....
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l---~-~gG~iiDTPGf~~~~l 231 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL---P-GGGWIIDTPGFRSLGL 231 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc---C-CCCEEEeCCCCCccCc
Confidence 346899999999999999999997554333311 2223333 333332 1 2345999999986543
No 328
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-08 Score=79.23 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..++|+++|.+|+||||+=..+.... -.......+.|.+..-.+.....+..+.+||+-|-. ..+...+...-
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny-~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~ 75 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANY-IARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQE 75 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhh-hhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcc
Confidence 34899999999999999877765222 112233456666666555554455678899999822 12222222122
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH----HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE----ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~----~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
...+..++++++|+|++.+--..| ...++.+.+.. +. ..++++++|+|....
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~--AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PE--AKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-Cc--ceEEEEEeechhccc
Confidence 345678899999999983322222 23344444432 22 278899999998865
No 329
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=4.1e-08 Score=87.54 Aligned_cols=117 Identities=22% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC---------------CCcceeeEEEEEe--eeC--CceEEEEeCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS---------------SGVTKTCEMKTTV--LKD--GQVVNVIDTPG 78 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~---------------~~~t~~~~~~~~~--~~~--~~~~~liDtpG 78 (277)
..++|+++|+-++|||+|+..|.+...+...... .+.+....-.... ... .+-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4589999999999999999999876653321000 0122211111111 112 23488999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
..++. .+....+. -+|++++++|+..+......+.++...+. . .|+++|+||+|.+
T Consensus 207 HVnF~-------DE~ta~l~----~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~--~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFS-------DETTASLR----LSDGVVLVVDVAEGVMLNTERIIKHAIQN---R--LPIVVVINKVDRL 262 (971)
T ss_pred cccch-------HHHHHHhh----hcceEEEEEEcccCceeeHHHHHHHHHhc---c--CcEEEEEehhHHH
Confidence 88742 35555554 44999999999977777666665544433 2 2899999999966
No 330
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.81 E-value=1.1e-08 Score=83.81 Aligned_cols=60 Identities=25% Similarity=0.253 Sum_probs=40.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
..++++|++|||||||+|+|++......+... .. +|+....... . ...|+||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccCC
Confidence 68999999999999999999987654443211 12 3333333332 2 237999999987654
No 331
>PRK12289 GTPase RsgA; Reviewed
Probab=98.81 E-value=9.6e-09 Score=87.95 Aligned_cols=60 Identities=25% Similarity=0.324 Sum_probs=39.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Ccce-eeEEEEEeeeCCceEEEEeCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTK-TCEMKTTVLKDGQVVNVIDTPGLFDLS 83 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~-~~~~~~~~~~~~~~~~liDtpG~~~~~ 83 (277)
..++|+|++|||||||||+|++......+..+. ..|+ ....... ..+ ..|+||||+....
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--PNG--GLLADTPGFNQPD 238 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--CCC--cEEEeCCCccccc
Confidence 468999999999999999999876544432211 1233 3332222 123 3799999987644
No 332
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=4.4e-08 Score=88.27 Aligned_cols=174 Identities=17% Similarity=0.178 Sum_probs=106.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-----------------eeCCceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-----------------LKDGQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----------------~~~~~~~~liDtpG~~ 80 (277)
.++.+.|+|+..+|||-|+..|-+.++..... .+.|..++...+. .+.-..+.+|||||..
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegea--ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEA--GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccc--cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 45789999999999999999999877643332 2333333222110 0111237899999965
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc----cccc
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED----HEKT 156 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~----~~~~ 156 (277)
+ |...-.......|..|+|+|+.+++.+.....+++|+.. .. |+||.+||+|.+-. +...
T Consensus 552 s-----------FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---kt--pFivALNKiDRLYgwk~~p~~~ 615 (1064)
T KOG1144|consen 552 S-----------FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---KT--PFIVALNKIDRLYGWKSCPNAP 615 (1064)
T ss_pred h-----------hhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---CC--CeEEeehhhhhhcccccCCCch
Confidence 4 222222223344999999999989988888888888764 22 89999999998732 2233
Q ss_pred HHHHhcccCC-------chHHHHHhhc---C-CeEEEEe--------CCCcccccChhHHHHHHHHHHHHHh
Q 023779 157 LEDFLGHECP-------KPLKEILQLC---D-NRCVLFD--------NKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 157 l~~~l~~~~~-------~~~~~~~~~~---~-~~~~~~~--------~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+.+.+..... ..+..++..+ | +-.+.|. ...++||..+.|+.+|+.+|..+-+
T Consensus 616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 3333222100 1123332221 1 1111122 2246688889999999998877644
No 333
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.79 E-value=2.4e-07 Score=76.69 Aligned_cols=91 Identities=19% Similarity=0.164 Sum_probs=60.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeee-------------C---CceEEEEeCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLK-------------D---GQVVNVIDTPGLFD 81 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~---~~~~~liDtpG~~~ 81 (277)
+.++|+|||-+++|||||+|+|+.....+.. .+-+|.......+... . .-.+.+.|..|+-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~N--fPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAAN--FPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccC--CCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 5689999999999999999999976653221 1222322222111101 1 12488999999987
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
......-++..+...+. .+|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR----~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIR----HVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhh----hccceeEEEEec
Confidence 77666667777776654 458888888875
No 334
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=9.1e-08 Score=70.98 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=72.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+.-+++++|--|+|||||++.|-..... ...+...+|+.. -...+..++.+|.-|. .+-.+..
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPTSE~-----l~Ig~m~ftt~DLGGH-----------~qArr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEE-----LSIGGMTFTTFDLGGH-----------LQARRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCChHH-----heecCceEEEEccccH-----------HHHHHHH
Confidence 3468999999999999999999754431 112122222211 1256778999998882 2334444
Q ss_pred hhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 98 GMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+++.+|++++++|+. .++... +..++.+... ..-.+.|++++.||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es-~~eld~ll~~-e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAES-KKELDALLSD-ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHH-HHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence 56678889999999998 233222 2222222221 10123499999999997655
No 335
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.76 E-value=3.8e-08 Score=84.02 Aligned_cols=123 Identities=18% Similarity=0.159 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEEEE----------------------------EeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKT----------------------------TVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~----------------------------~~~~~~ 68 (277)
+++.|+||||+||||||++-.|........+.... -.|++..... ......
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47999999999999999998887544311221111 1222221111 111234
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
+.+.||||.|... .+.....++..++..+ ...-+.+|++++.. ...-+.++.. |+.- ..--+++||+|
T Consensus 282 ~d~ILVDTaGrs~---~D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~dlkei~~~----f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQ---YDKEKIEELKELIDVS--HSIEVYLVLSATTK-YEDLKEIIKQ----FSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCc---cCHHHHHHHHHHHhcc--ccceEEEEEecCcc-hHHHHHHHHH----hccC--CcceeEEEccc
Confidence 6799999999775 3444555666666544 33445566666511 1111333333 3321 13557899999
Q ss_pred CCCc
Q 023779 149 DLED 152 (277)
Q Consensus 149 ~~~~ 152 (277)
....
T Consensus 350 ET~s 353 (407)
T COG1419 350 ETTS 353 (407)
T ss_pred ccCc
Confidence 7644
No 336
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=68.62 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=102.5
Q ss_pred CCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 5 VVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 5 ~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
.+.++.-+.....-.++|+++|++-.|||||+-...+...-.......+.........+. .....+.+||.-|
T Consensus 6 tv~~~~~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-~t~IsfSIwdlgG------ 78 (205)
T KOG1673|consen 6 TVANNSIPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-GTDISFSIWDLGG------ 78 (205)
T ss_pred ccccCCCcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEec-ceEEEEEEEecCC------
Confidence 344444444455566899999999999999998877655421111111111111111111 1233578999988
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
.+++...+..+..++-++|+++|++.+.+... +.+|.++..|-....--|+|+||-|..-.-...+...+..
T Consensus 79 -----~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~- 150 (205)
T KOG1673|consen 79 -----QREFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR- 150 (205)
T ss_pred -----cHhhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH-
Confidence 34677777777788899999999995544333 4456666555443223567899999663311223222221
Q ss_pred CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+..........++ +|+-..-++..++..+..-+
T Consensus 151 ---qar~YAk~mnAsL~F------~Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 151 ---QARKYAKVMNASLFF------CSTSHSINVQKIFKIVLAKL 185 (205)
T ss_pred ---HHHHHHHHhCCcEEE------eeccccccHHHHHHHHHHHH
Confidence 133344444444443 23344567888887665443
No 337
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.75 E-value=1.5e-08 Score=82.30 Aligned_cols=77 Identities=19% Similarity=0.176 Sum_probs=32.2
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHH---HHHhCcCccCcEEEEEeC
Q 023779 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRL---PNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l---~~~~~~~~~~~~ivv~nk 146 (277)
.+.++||||....... ......+.+.+.. ...-++++++|.. .++......-..+ .-++.-+ .|.+.|+||
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence 6899999994321100 0111222222221 3456889999987 4443222211111 1111112 299999999
Q ss_pred CCCCCc
Q 023779 147 GDDLED 152 (277)
Q Consensus 147 ~D~~~~ 152 (277)
+|....
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 998873
No 338
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=4.4e-08 Score=82.56 Aligned_cols=60 Identities=30% Similarity=0.320 Sum_probs=40.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----Cccee-eEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKT-CEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~-~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
...++++|++|+|||||+|+|+|......+.... ..|++ ..... .. ....++||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~---~~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYD---LP-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEE---cC-CCcEEEECCCcCcc
Confidence 4689999999999999999999877655442221 12332 22222 12 22479999998853
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.74 E-value=3.2e-08 Score=85.53 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=66.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCCCCc-ceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSGV-TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~---~~~~~~~~-t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
...++++|.+|||||||+|+|++..... ...+..+. |...... . -+..+.++||||+.........+..+..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~--~~~~~~l~DtPG~~~~~~~~~~l~~~~l 229 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--P--LDDGHSLYDTPGIINSHQMAHYLDKKDL 229 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--E--eCCCCEEEECCCCCChhHhhhhcCHHHH
Confidence 3689999999999999999999754211 11222333 3332222 1 1334679999999864211111111111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+. .........++++..+.+..+....+.++.. .. ..+.+.+++.+....
T Consensus 230 ~~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~h~ 281 (360)
T TIGR03597 230 KYIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNIHR 281 (360)
T ss_pred hhcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCceeEe
Confidence 1211 1245677788877765444444333333332 11 145556666655543
No 340
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.74 E-value=1.3e-07 Score=87.75 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=67.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccC-CCCCcceeeEE------------------EE----------EeeeCCc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASA-GSSGVTKTCEM------------------KT----------TVLKDGQ 69 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~-~~~~~t~~~~~------------------~~----------~~~~~~~ 69 (277)
+..|+|||++|+||||++..|++......|. ...-.+.+... .. .....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4789999999999999999998654221110 00000000000 00 0112245
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
.++||||||.... +..+.+++..... ...++-.++|+|++. ...+ ..++..+....+.+ +.=+|+||.|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~~---i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGED---VDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccCC---CCEEEEeccC
Confidence 6899999997652 2334444443322 235677889998872 1222 12333333321112 4568899999
Q ss_pred CCCc
Q 023779 149 DLED 152 (277)
Q Consensus 149 ~~~~ 152 (277)
....
T Consensus 335 Et~~ 338 (767)
T PRK14723 335 EATH 338 (767)
T ss_pred CCCC
Confidence 7755
No 341
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.74 E-value=5.4e-08 Score=81.61 Aligned_cols=59 Identities=31% Similarity=0.351 Sum_probs=39.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CC-cceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SG-VTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
..++++|++|+|||||+|+|+|...+..+... .. +|+...... .. ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~---~~-~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFP---LP-GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEE---cC-CCCEEEECCCCCcc
Confidence 78999999999999999999998765555221 11 222222222 11 12479999999653
No 342
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.73 E-value=6e-08 Score=83.03 Aligned_cols=123 Identities=19% Similarity=0.167 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC--------ccccCCCCC---------cceeeEEEEE-------------eeeC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA--------FKASAGSSG---------VTKTCEMKTT-------------VLKD 67 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~--------~~~~~~~~~---------~t~~~~~~~~-------------~~~~ 67 (277)
+..+|+|+|++|+||||++..|.+.-. ...+....+ ....+.+... ....
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 347899999999999999999863211 000000000 0000000000 0001
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.||||||-.. .+.....++...+... .++.+++|++++ .-...-...++.+.. ...-=+|+||+
T Consensus 320 ~~DvVLIDTaGRs~---kd~~lm~EL~~~lk~~--~PdevlLVLsAT-tk~~d~~~i~~~F~~------~~idglI~TKL 387 (436)
T PRK11889 320 RVDYILIDTAGKNY---RASETVEEMIETMGQV--EPDYICLTLSAS-MKSKDMIEIITNFKD------IHIDGIVFTKF 387 (436)
T ss_pred CCCEEEEeCccccC---cCHHHHHHHHHHHhhc--CCCeEEEEECCc-cChHHHHHHHHHhcC------CCCCEEEEEcc
Confidence 34789999999764 2334444555555433 457788888875 111111333333332 12466899999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 388 DET~k 392 (436)
T PRK11889 388 DETAS 392 (436)
T ss_pred cCCCC
Confidence 97754
No 343
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.71 E-value=6.4e-08 Score=84.41 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=65.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----Ccceee---------------EEEE----------EeeeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----GVTKTC---------------EMKT----------TVLKD 67 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~~t~~~---------------~~~~----------~~~~~ 67 (277)
..+.+|+|+|++|+||||++..|.+......+.... ..+.+. .... .....
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~ 268 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR 268 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc
Confidence 456899999999999999999887642111110000 000000 0000 01122
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.+|||+|.... +.....++... .. ...++-.++|++++.. ..+ ..+.+.. |.. ...-=+|+||+
T Consensus 269 ~~d~VLIDTaGrsqr---d~~~~~~l~~l-~~-~~~~~~~~LVl~at~~--~~~--~~~~~~~-f~~--~~~~~~I~TKl 336 (420)
T PRK14721 269 GKHMVLIDTVGMSQR---DQMLAEQIAML-SQ-CGTQVKHLLLLNATSS--GDT--LDEVISA-YQG--HGIHGCIITKV 336 (420)
T ss_pred CCCEEEecCCCCCcc---hHHHHHHHHHH-hc-cCCCceEEEEEcCCCC--HHH--HHHHHHH-hcC--CCCCEEEEEee
Confidence 456889999997752 23333444332 21 2335667788888721 222 2122222 322 12566899999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 337 DEt~~ 341 (420)
T PRK14721 337 DEAAS 341 (420)
T ss_pred eCCCC
Confidence 97755
No 344
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.70 E-value=5.1e-08 Score=82.85 Aligned_cols=62 Identities=29% Similarity=0.355 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
...+++++|-+||||||+||+|+|......+.. ++.|....... -...+.++||||+.-...
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIK----LDDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEE----cCCCeEEecCCCcCCCCc
Confidence 347899999999999999999999887433322 24443333332 234488999999986543
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.69 E-value=1.1e-07 Score=81.23 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC----------------CceEEEEeCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD----------------GQVVNVIDTPGLFDLS 83 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~liDtpG~~~~~ 83 (277)
.+++|+|.+++|||||+|+|++......... ..+|...........+ ...+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 6899999999999999999998765122221 1122222221111112 1357899999998654
Q ss_pred CCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 84 AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
.....+...+...+.. .|++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~----~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIRE----VDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHh----CCEEEEEEeCC
Confidence 3334455566666554 49999999985
No 346
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.69 E-value=1.2e-07 Score=81.51 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=66.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-Ccceee------------------EEEE----------EeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTC------------------EMKT----------TVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~------------------~~~~----------~~~~~~ 68 (277)
.+..++|+|++|+||||++..|.+......|.... -.+.+. .... ...+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 45789999999999999999987542111110000 000000 0000 011235
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCc---cCcEEEEEe
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNV---FDYMIVVFT 145 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~---~~~~ivv~n 145 (277)
..+.||||||.... +..+.+++.. +.. ...+.-.++|+++..+....+ ..+..+....+.+. ....=+|+|
T Consensus 216 ~DlVLIDTaG~~~~---d~~l~e~La~-L~~-~~~~~~~lLVLsAts~~~~l~-evi~~f~~~~~~p~~~~~~~~~~I~T 289 (374)
T PRK14722 216 KHMVLIDTIGMSQR---DRTVSDQIAM-LHG-ADTPVQRLLLLNATSHGDTLN-EVVQAYRSAAGQPKAALPDLAGCILT 289 (374)
T ss_pred CCEEEEcCCCCCcc---cHHHHHHHHH-Hhc-cCCCCeEEEEecCccChHHHH-HHHHHHHHhhcccccccCCCCEEEEe
Confidence 67899999997752 2223333332 222 233455678888873322222 23344444322110 013458899
Q ss_pred CCCCCCc
Q 023779 146 GGDDLED 152 (277)
Q Consensus 146 k~D~~~~ 152 (277)
|.|....
T Consensus 290 KlDEt~~ 296 (374)
T PRK14722 290 KLDEASN 296 (374)
T ss_pred ccccCCC
Confidence 9997755
No 347
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.69 E-value=1.3e-07 Score=93.32 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccC------CCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCC----chHHH
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASA------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAG----SEFVG 90 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~----~~~~~ 90 (277)
-.+|||++|+||||+|+.- |..++-... ...+.|..| ..|-....++|||+|.+-...+ +...-
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c-----~wwf~~~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNC-----DWWFTDEAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCccc-----ceEecCCEEEEcCCCccccCCCcccccHHHH
Confidence 3899999999999999875 555432211 111223322 3344566779999997644322 22234
Q ss_pred HHHHHHHhhc--CCCccEEEEEEeCCCCCC--HH--------HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 91 KEIVKCLGMA--KDGIHAFLVVFSVTNRFS--QE--------EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 91 ~~~~~~~~~~--~~~~~~~l~v~d~~~~~~--~~--------~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+...+... .+.++++|+++++..-+. .. -+..+..+...+|... ||.||+||+|.+..
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC
Confidence 4455555544 356899999999982222 22 1344556666677766 99999999998843
No 348
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=5e-08 Score=88.16 Aligned_cols=118 Identities=21% Similarity=0.383 Sum_probs=82.5
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCc--------------cccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAF--------------KASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
.++.+.++|.++.+...|||||+.+|+..+.. .......+.|......... ..++.+++||+||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~-~~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLL-HKDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccc-cCceEEEEecCCCc
Confidence 45567789999999999999999998754320 0111223555555444322 46788999999999
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH--HHHHHhCcCccCcEEEEEeCCCCC
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH--RLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
.|+. .++..+...+ |.+++++|+-.++...+...++ |+... ..++|+||+|.+
T Consensus 83 vdf~-------sevssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~~~~-------~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDFS-------SEVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWIEGL-------KPILVINKIDRL 137 (887)
T ss_pred cchh-------hhhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHHccC-------ceEEEEehhhhH
Confidence 8853 3555555444 9999999998788877776666 44432 688999999944
No 349
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.69 E-value=1e-06 Score=74.69 Aligned_cols=126 Identities=17% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc--------CCCC---------CcceeeEEEEEe---------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS--------AGSS---------GVTKTCEMKTTV--------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~--------~~~~---------~~t~~~~~~~~~--------------- 64 (277)
.++..|+++|++|+||||++..|.+......+ .... .......+....
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 35689999999999999999988653211100 0000 000001111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (277)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (277)
...+..+.||||||.... +.....++....... ...++..++|++++.+ .........+.+.+ .+
T Consensus 192 ~~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a~~f~~~~-----~~ 261 (318)
T PRK10416 192 AKARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQAKAFHEAV-----GL 261 (318)
T ss_pred HHhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHHHHHHhhC-----CC
Confidence 013456899999997653 233333444443221 2357888999999832 22222122222222 25
Q ss_pred EEEEEeCCCCCCc
Q 023779 140 MIVVFTGGDDLED 152 (277)
Q Consensus 140 ~ivv~nk~D~~~~ 152 (277)
.-+|+||+|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 7799999996644
No 350
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=9.5e-08 Score=72.45 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=93.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--eeCC-ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV--LKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
..+++++|..|.||||++++.+-..+-.... .|+.....+.. ...+ ..+.+|||.|..- ...
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~----at~Gv~~~pl~f~tn~g~irf~~wdtagqEk-----------~gg 74 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP----ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEK-----------KGG 74 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceeccc----CcceeEEeeeeeecccCcEEEEeeeccccee-----------ecc
Confidence 5899999999999999999887555422222 22222222222 1223 5688999999442 122
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
.-..++-...+.++++|+..+++-.. .++.+-+...++. .|++++.||.|.... . .... --.+..
T Consensus 75 lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r--~-----~k~k----~v~~~r 140 (216)
T KOG0096|consen 75 LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKAR--K-----VKAK----PVSFHR 140 (216)
T ss_pred cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceecccc--c-----cccc----cceeee
Confidence 22234556688999999997777666 3555556666654 399999999996544 1 1100 001111
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.-...|+ ..|++.+.++..-+-++.+.+..
T Consensus 141 kknl~y~------~iSaksn~NfekPFl~LarKl~G 170 (216)
T KOG0096|consen 141 KKNLQYY------EISAKSNYNFERPFLWLARKLTG 170 (216)
T ss_pred cccceeE------EeecccccccccchHHHhhhhcC
Confidence 1122222 23566677788877777776643
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.64 E-value=7e-08 Score=86.79 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=80.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.++-+|+|+|++|+|||||++.|+|...+.+|....+.+....++...... ...-+++|.-.-... ......+..
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~----~~~e~~~r~ 421 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFP----DGDEQEVRA 421 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCc----cccHHHHHH
Confidence 466799999999999999999999888777776666777777777543211 011122221000000 000234444
Q ss_pred HHhhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE---EeCCCCCCcccccHHHHhcc
Q 023779 96 CLGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDDLEDHEKTLEDFLGH 163 (277)
Q Consensus 96 ~~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv---~nk~D~~~~~~~~l~~~l~~ 163 (277)
++... +++.++.- .+. .++++++..+.+.+-+..++ +++|+ +||.|...- ..+++.+..
T Consensus 422 ~L~~f~F~~~~~~~---~v~-~LSGGEk~Rl~La~ll~~~p---NvLiLDEPTNhLDi~s~--~aLe~aL~~ 484 (530)
T COG0488 422 YLGRFGFTGEDQEK---PVG-VLSGGEKARLLLAKLLLQPP---NLLLLDEPTNHLDIESL--EALEEALLD 484 (530)
T ss_pred HHHHcCCChHHHhC---chh-hcCHhHHHHHHHHHHhccCC---CEEEEcCCCccCCHHHH--HHHHHHHHh
Confidence 54433 23333322 222 67789988888877766653 67776 799997655 556666554
No 352
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.64 E-value=5.6e-07 Score=80.03 Aligned_cols=25 Identities=28% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+..|+|+|++|+||||++..|..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988864
No 353
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.63 E-value=1.2e-06 Score=72.71 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=45.7
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc----CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEE
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA----KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (277)
.+..+.||||||.... +.....++....... ...+|..++|+++.. ..........+.+.++ ..-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~~-----~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAVG-----LTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhCC-----CCEE
Confidence 3467899999998752 334444444443322 234789999999972 2333332233333222 5678
Q ss_pred EEeCCCCCCc
Q 023779 143 VFTGGDDLED 152 (277)
Q Consensus 143 v~nk~D~~~~ 152 (277)
|+||+|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999997655
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.63 E-value=2.2e-07 Score=79.39 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=66.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC------C--ccccCCCCCc---------ceeeEEEEEee-------------e
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK------A--FKASAGSSGV---------TKTCEMKTTVL-------------K 66 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~------~--~~~~~~~~~~---------t~~~~~~~~~~-------------~ 66 (277)
.+...|+++|++|+||||++..|.... + ........+. ........... .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 356889999999999999999886321 1 0000100000 00000100000 0
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+..+.||||||... .+.....++....... .+|.+++|++++ ....+ ....+.. |.. ...--+|+||
T Consensus 284 ~~~D~VLIDTAGr~~---~d~~~l~EL~~l~~~~--~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TK 351 (407)
T PRK12726 284 NCVDHILIDTVGRNY---LAEESVSEISAYTDVV--HPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITK 351 (407)
T ss_pred CCCCEEEEECCCCCc---cCHHHHHHHHHHhhcc--CCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEc
Confidence 245789999999865 2334444454444322 457777777664 22223 3333333 322 1256788999
Q ss_pred CCCCCc
Q 023779 147 GDDLED 152 (277)
Q Consensus 147 ~D~~~~ 152 (277)
.|....
T Consensus 352 LDET~~ 357 (407)
T PRK12726 352 MDETTR 357 (407)
T ss_pred ccCCCC
Confidence 997654
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=98.62 E-value=4.9e-07 Score=76.90 Aligned_cols=73 Identities=18% Similarity=0.142 Sum_probs=43.4
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.||||+|.... +..+..++...... -.+|..++|+++..+ .........+....+ .--+|+||+
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~~-----~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAVG-----IDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcCC-----CCEEEEeee
Confidence 456899999997752 33444455444332 256888999998622 222222233322222 467899999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 97654
No 356
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.62 E-value=1.4e-07 Score=71.84 Aligned_cols=57 Identities=32% Similarity=0.427 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
...+++++|.+|+||||++|.+.+......+.. .+.|...... ..+..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~~~----~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQLV----KITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeEEE----EcCCCEEEEECcCC
Confidence 347899999999999999999997654333221 2223222211 12346889999995
No 357
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.62 E-value=3.2e-07 Score=73.93 Aligned_cols=106 Identities=17% Similarity=0.158 Sum_probs=55.7
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC--CCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT--NRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
+..+.||.|.|.+. .++. .. .-+|.+++|+... ..+...-.- +.++ .=++|+|
T Consensus 121 G~D~IiiETVGvGQ---------sE~~-I~----~~aD~~v~v~~Pg~GD~iQ~~KaG----imEi-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQ---------SEVD-IA----DMADTVVLVLVPGLGDEIQAIKAG----IMEI-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSST---------HHHH-HH----TTSSEEEEEEESSTCCCCCTB-TT----HHHH--------SEEEEE
T ss_pred CCCEEEEeCCCCCc---------cHHH-HH----HhcCeEEEEecCCCccHHHHHhhh----hhhh-------ccEEEEe
Confidence 56789999999885 1222 22 2348888887765 222211111 2222 3578999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
|.|.... +..... ++..+..... .+.+ +...+++..+.++++|++.|.+....
T Consensus 176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~p--pV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRP--PVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB----EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCChHHH-----HHHHHH-----HHHHHhhccccccCCCC--CEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9994322 233332 4444433221 1110 11245667789999999999887643
No 358
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=1.7e-06 Score=71.80 Aligned_cols=173 Identities=17% Similarity=0.217 Sum_probs=104.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC------Cccc--------cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK------AFKA--------SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~------~~~~--------~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
..+..+|+-||+...|||||-.+|+..- .+.. ..-..+.|....-.... -..+++-=+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYe-Ta~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYE-TAKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeee-ccccccccCCCCchHH
Confidence 3456899999999999999999986311 1100 01112444332222222 2456788899999654
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l 161 (277)
.+.+.+. .....|+.++|+.+.++.-+..++.+-+.++. |-+ +++|.+||.|...+ +..-+.+
T Consensus 130 ----------YIKNMIt-GaaqMDGaILVVaatDG~MPQTrEHlLLArQV-GV~---~ivvfiNKvD~V~d--~e~leLV 192 (449)
T KOG0460|consen 130 ----------YIKNMIT-GAAQMDGAILVVAATDGPMPQTREHLLLARQV-GVK---HIVVFINKVDLVDD--PEMLELV 192 (449)
T ss_pred ----------HHHHhhc-CccccCceEEEEEcCCCCCcchHHHHHHHHHc-CCc---eEEEEEecccccCC--HHHHHHH
Confidence 2333332 33466999999999866666677766666664 543 79999999999966 5555555
Q ss_pred cccCCchHHHHHhhcC---CeEEEEeCCCcc------cccChhHHHHHHHHHHHHHhh
Q 023779 162 GHECPKPLKEILQLCD---NRCVLFDNKTKD------EAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+- ..++++..+| +..-++...+-+ +......+.+|++.++..++.
T Consensus 193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 43 2677777765 222222221111 111224577888888887654
No 359
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.54 E-value=6.2e-06 Score=72.71 Aligned_cols=72 Identities=22% Similarity=0.163 Sum_probs=43.5
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+.||||||.... +..+.+++...... ..+|.+++|+|++.+ . ..++.+.. |.... ...-+|+||+|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~~--~~pdevlLVvda~~g--q---~av~~a~~-F~~~l-~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKEA--VKPDEVLLVIDATIG--Q---QAKNQAKA-FHEAV-GIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHHH--hcccceeEEEecccc--H---HHHHHHHH-HHhcC-CCCEEEEeccc
Confidence 46899999997652 34444455544332 256889999998732 1 23334443 33211 13568899999
Q ss_pred CCCc
Q 023779 149 DLED 152 (277)
Q Consensus 149 ~~~~ 152 (277)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 7654
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.53 E-value=3.9e-07 Score=78.99 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcccc---------CCCCC---------cceeeEEEEE---------eeeCCceE
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS---------AGSSG---------VTKTCEMKTT---------VLKDGQVV 71 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~---------~~~~~---------~t~~~~~~~~---------~~~~~~~~ 71 (277)
...|+++|++||||||++..|........| ....+ .......... ....+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 467999999999999999888642211111 00000 0000000000 00135578
Q ss_pred EEEeCCCCCCCCCCchHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 72 NVIDTPGLFDLSAGSEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 72 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
.||||||+... +.....++...+.... ..++-.++|++++.. ..+ ....+. .|.. ..+-=+|+||+|..
T Consensus 303 VLIDTaGr~~r---d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~--~~~~~~-~f~~--~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH--TLTVLK-AYES--LNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCcc---CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH--HHHHHH-HhcC--CCCCEEEEEcccCC
Confidence 99999998742 2233344544444322 234567888888722 212 212222 2321 12566899999976
Q ss_pred Cc
Q 023779 151 ED 152 (277)
Q Consensus 151 ~~ 152 (277)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 54
No 361
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.53 E-value=1.4e-07 Score=82.00 Aligned_cols=60 Identities=35% Similarity=0.353 Sum_probs=44.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC-CCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG-SSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
..+|++||-+||||||+||+|.|... .+++ .++.|...+.. .-...+.|.|+||+.-++-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~Kk--VsVS~TPGkTKHFQTi----~ls~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKK--VSVSSTPGKTKHFQTI----FLSPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCce--eeeecCCCCcceeEEE----EcCCCceecCCCCccccCC
Confidence 48999999999999999999999886 3333 34445444433 2345678999999976543
No 362
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.53 E-value=3e-06 Score=69.43 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=57.4
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHH-HHHHHhCcCccCcEEEEEeC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVH-RLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~-~l~~~~~~~~~~~~ivv~nk 146 (277)
|+.+.||.|.|.+.... ++. .-+|.+++|.-.. . +.+.+.++ =+.++ -=++|+||
T Consensus 143 G~DvIIVETVGvGQsev-------~I~-------~~aDt~~~v~~pg--~-GD~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEV-------DIA-------NMADTFLVVMIPG--A-GDDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchh-------HHh-------hhcceEEEEecCC--C-CcHHHHHHhhhhhh-------hheeeEec
Confidence 46788999999876321 222 2238888776544 2 12222222 12222 34789999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEE-eCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLF-DNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.|.-.. . ..... +...+.... .+.... .....+++..+.++++|++.|......
T Consensus 199 aD~~~A--~---~a~r~-----l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 199 ADRKGA--E---KAARE-----LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred cChhhH--H---HHHHH-----HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 994332 1 11111 222222211 111111 122356777889999999999988764
No 363
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.52 E-value=1.3e-06 Score=77.53 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.+..|+|+|++||||||++..|++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHH
Confidence 34789999999999999999998643
No 364
>PRK13796 GTPase YqeH; Provisional
Probab=98.49 E-value=2.6e-07 Score=80.03 Aligned_cols=59 Identities=25% Similarity=0.210 Sum_probs=36.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcc---ccCCCCC-cceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFK---ASAGSSG-VTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~---~~~~~~~-~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
...+.++|.+|||||||||+|++..... ...+..+ +|....... .+ ....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~---l~-~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP---LD-DGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE---cC-CCcEEEECCCccc
Confidence 4689999999999999999998643111 1122233 333332222 12 2247999999964
No 365
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=7.6e-07 Score=77.20 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-------c-----cCCCC-------------CcceeeEEEE------Eeee
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-------A-----SAGSS-------------GVTKTCEMKT------TVLK 66 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-------~-----~~~~~-------------~~t~~~~~~~------~~~~ 66 (277)
.+..|+++|++|+||||++..|....... . ..... +......... ....
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 45789999999999999998886321100 0 00000 0000000000 0112
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+..+.||||||.... +.....++...+.... ..+-.++|++++.. ..+ ..+.+... .. ..+-=+|+||
T Consensus 253 ~~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~--~~~~~~~~-~~--~~~~~~I~TK 321 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSD--VKEIFHQF-SP--FSYKTVIFTK 321 (388)
T ss_pred CCCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHH--HHHHHHHh-cC--CCCCEEEEEe
Confidence 3567999999998752 2222345555554332 23357888888733 222 22333433 11 1156789999
Q ss_pred CCCCCc
Q 023779 147 GDDLED 152 (277)
Q Consensus 147 ~D~~~~ 152 (277)
.|....
T Consensus 322 lDet~~ 327 (388)
T PRK12723 322 LDETTC 327 (388)
T ss_pred ccCCCc
Confidence 997654
No 366
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.48 E-value=4.4e-07 Score=79.97 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=62.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceee------------------EEEE----------EeeeCCc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTC------------------EMKT----------TVLKDGQ 69 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~------------------~~~~----------~~~~~~~ 69 (277)
...|+|+|++|+||||++..|..... ...+....-.+.+. .... .....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999988754321 01110000000000 0000 0011245
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
.+.||||||.... +.....++..++... ....-.++|++++. ...+ ...+.. |..- .+--+|+||+|
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~~-~~~~~~~LVl~a~~--~~~~l~~~~~~----f~~~--~~~~vI~TKlD 368 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEFS-GEPIDVYLVLSATT--KYEDLKDIYKH----FSRL--PLDGLIFTKLD 368 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhcc-CCCCeEEEEEECCC--CHHHHHHHHHH----hCCC--CCCEEEEeccc
Confidence 7899999998652 233334455554422 23356677777752 2222 222232 3221 13468999999
Q ss_pred CCCc
Q 023779 149 DLED 152 (277)
Q Consensus 149 ~~~~ 152 (277)
....
T Consensus 369 et~~ 372 (424)
T PRK05703 369 ETSS 372 (424)
T ss_pred cccc
Confidence 7544
No 367
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.46 E-value=1.8e-06 Score=65.82 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~ 42 (277)
.++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999998865
No 368
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.44 E-value=1.5e-06 Score=70.74 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+-.+..+.-+ ++..++|+||+|||||||+++|+|.-.+..|
T Consensus 17 il~~ls~~i~--~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 17 ILDDLSFSIP--KGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred EEecceEEec--CCcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 3344444443 4588999999999999999999986665554
No 369
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.43 E-value=9e-07 Score=70.74 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..+.|+|+|+.|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998753
No 370
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=7.3e-06 Score=63.87 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSG 55 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998665444
No 371
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.42 E-value=9e-06 Score=63.09 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++|+|++|+|||||++.|+|...+..|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 54 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD 54 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCc
Confidence 45679999999999999999999998765554
No 372
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.39 E-value=1.1e-05 Score=66.58 Aligned_cols=33 Identities=24% Similarity=0.450 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~ 47 (277)
..+++..|+++|.+|+||||||..|-|.+.+..
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~~Kk 80 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSETVKK 80 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhcccccCC
Confidence 345678999999999999999999998765333
No 373
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=1.6e-06 Score=71.56 Aligned_cols=123 Identities=19% Similarity=0.172 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC---cccc-CCCC-------------CcceeeEEEEEe-------------eeC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA---FKAS-AGSS-------------GVTKTCEMKTTV-------------LKD 67 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~---~~~~-~~~~-------------~~t~~~~~~~~~-------------~~~ 67 (277)
+..+|+++|++|+||||++..|++... ...+ .... ............ ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 447999999999999999998865321 0011 0000 000000001000 012
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.||||||-... +.....++...+... .++..++|++++.. ..+ ..+.+.. |.. ..+-=+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~~--~~d--~~~~~~~-f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASMK--SKD--MIEIITN-FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCccC--HHH--HHHHHHH-hCC--CCCCEEEEEee
Confidence 457899999997642 234444555554433 45678999998611 222 2233333 222 12566899999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 222 Det~~ 226 (270)
T PRK06731 222 DETAS 226 (270)
T ss_pred cCCCC
Confidence 97755
No 374
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.5e-06 Score=70.37 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++-.++|+||+|+|||||+++|+|.-.+..|
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 4478999999999999999999996665555
No 375
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.35 E-value=8.6e-06 Score=64.53 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+|+|+|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998865
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=98.34 E-value=4.6e-05 Score=67.17 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.|+||||.... +..+..++....... .++.+++|+|+. +.. ..++.+... .... ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~v--~p~evllVlda~---~gq--~av~~a~~F-~~~~-~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAAV--NPDEILLVVDAM---TGQ--DAVNTAKAF-NEAL-GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHhh--CCCeEEEEEecc---cHH--HHHHHHHHH-HhhC-CCCEEEEeCc
Confidence 356899999997642 334444444443322 567789999975 222 222333332 1111 1356788999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 251 D~~~r 255 (433)
T PRK10867 251 DGDAR 255 (433)
T ss_pred cCccc
Confidence 96644
No 377
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.34 E-value=7.8e-06 Score=63.38 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=61.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHH----H-H
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFV----G-K 91 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~----~-~ 91 (277)
.++-.++|+|++|+|||||++.|+|...+..|....... ...... ........++...|.+.......+.+ . .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~-~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK-DIKKEP-EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-Ecccch-HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 345789999999999999999999976544442111000 000000 00112233455556554321111111 1 1
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeC
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
+...........++++++=-+.. .+..... .+++.+......+ ..+|+++|
T Consensus 102 qrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g---~tiii~th 153 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTS-GLDPESRREFWELLRELKKEG---KTILLSSH 153 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHHHHCC---CEEEEECC
Confidence 11222222345666665554444 6666553 4445555543322 47777776
No 378
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.34 E-value=5.2e-06 Score=63.71 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSG 55 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 35578999999999999999999998765444
No 379
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=1.9e-06 Score=83.25 Aligned_cols=135 Identities=17% Similarity=0.190 Sum_probs=79.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH-HHHH---HHHHH
Q 023779 22 VVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF-VGKE---IVKCL 97 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~-~~~~---~~~~~ 97 (277)
.+|||++|+||||++.. +|..++-................+..+-+..-++|||.|-.-...+..+ -..+ +...+
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 78999999999999975 3444322221111111111112223456677889999998755442222 1222 33333
Q ss_pred hhc--CCCccEEEEEEeCCC--CCCHHHH--------HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc
Q 023779 98 GMA--KDGIHAFLVVFSVTN--RFSQEEE--------TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH 163 (277)
Q Consensus 98 ~~~--~~~~~~~l~v~d~~~--~~~~~~~--------~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~ 163 (277)
... .+.++++++.+++.. ..+..+. ..+..+.+.++... |+.|++||.|.+.. +++|...
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~efF~~ 278 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEEFFGS 278 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHHHHhc
Confidence 433 467899999999982 2222222 23455566666655 99999999998843 5555554
No 380
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.30 E-value=4.4e-07 Score=75.08 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+...|.|+|++|+|||||++.+++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35688999999999999999988764
No 381
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.28 E-value=6.7e-06 Score=64.30 Aligned_cols=31 Identities=19% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASG 55 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998765554
No 382
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=1.4e-06 Score=73.20 Aligned_cols=139 Identities=20% Similarity=0.199 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccce--eeEEEEE------eeeC-----------
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVTK--TCEMKTT------VLKD----------- 67 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------~~t~--~~~~~~~------~~~~----------- 67 (277)
.+++++|...+|||||+-.|+.... +.|.... +-|. ......+ ..|.
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 7999999999999999999875442 1111100 1111 1111110 0011
Q ss_pred -CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 68 -GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 68 -~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+-++++|..|..... +.....+. .-.+|..++|+++..+++...++.+.++..+ ++ |++|++||
T Consensus 247 SSKlvTfiDLAGh~kY~-------~TTi~gLt--gY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvtK 312 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQ-------KTTIHGLT--GYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVTK 312 (591)
T ss_pred hcceEEEeecccchhhh-------eeeeeecc--cCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEEe
Confidence 1347888888844211 11111122 2357999999999878877777777777765 33 99999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcCCeE
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRC 180 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 180 (277)
+|...+ ..++..++. +..++.+.|.+-
T Consensus 313 ~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~k 339 (591)
T KOG1143|consen 313 MDLVDR--QGLKKTVKD-----LSNLLAKAGCTK 339 (591)
T ss_pred eccccc--hhHHHHHHH-----HHHHHhhcCccc
Confidence 999888 777777777 777877766443
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.24 E-value=2.4e-05 Score=58.74 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG 55 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 35578999999999999999999998764444
No 384
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.24 E-value=1.5e-05 Score=67.83 Aligned_cols=74 Identities=11% Similarity=0.154 Sum_probs=46.6
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~- 135 (277)
+++..+.+||+.|-.. ....+..++.++++++||+|.+ .+. ..-...+..+..++...
T Consensus 158 ~~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~ls-d~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 158 IKNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALS-EYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred ecceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEch-hcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 4566788999999432 2222334567889999999998 331 11223344445444322
Q ss_pred -ccCcEEEEEeCCCCCC
Q 023779 136 -VFDYMIVVFTGGDDLE 151 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~~ 151 (277)
...|++|++||.|...
T Consensus 226 ~~~~pill~~NK~D~f~ 242 (317)
T cd00066 226 FANTSIILFLNKKDLFE 242 (317)
T ss_pred ccCCCEEEEccChHHHH
Confidence 2259999999999654
No 385
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=4.2e-05 Score=60.04 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+||+|||||||+.+|.+-..+.+|
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 34578999999999999999999988877766
No 386
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.23 E-value=6.5e-05 Score=57.78 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35678999999999999999999998765554
No 387
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00013 Score=63.07 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+.|+||.|=.. .++.+..++...-.. -.||-+|+|+|+..+ +.-....+.+.+..+ -.=||+||+|
T Consensus 183 ~DvvIvDTAGRl~---ide~Lm~El~~Ik~~--~~P~E~llVvDam~G--QdA~~~A~aF~e~l~-----itGvIlTKlD 250 (451)
T COG0541 183 YDVVIVDTAGRLH---IDEELMDELKEIKEV--INPDETLLVVDAMIG--QDAVNTAKAFNEALG-----ITGVILTKLD 250 (451)
T ss_pred CCEEEEeCCCccc---ccHHHHHHHHHHHhh--cCCCeEEEEEecccc--hHHHHHHHHHhhhcC-----CceEEEEccc
Confidence 4689999999664 356666666655443 478999999998722 122233333443332 2558899999
Q ss_pred CCCcccccH
Q 023779 149 DLEDHEKTL 157 (277)
Q Consensus 149 ~~~~~~~~l 157 (277)
.....|..+
T Consensus 251 GdaRGGaAL 259 (451)
T COG0541 251 GDARGGAAL 259 (451)
T ss_pred CCCcchHHH
Confidence 776644444
No 388
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.21 E-value=6.7e-06 Score=66.35 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999997654444
No 389
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.21 E-value=4.4e-06 Score=70.49 Aligned_cols=138 Identities=16% Similarity=0.201 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-------------Ccc--eeeEEEEEe-----------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-------------GVT--KTCEMKTTV----------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-------------~~t--~~~~~~~~~----------------- 64 (277)
+....|+..|+..+|||||.-+|+-...- .|.... +-+ .+..++.+.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D-DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLD-DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCC-CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 34589999999999999999888643321 111100 111 122222211
Q ss_pred ---eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE
Q 023779 65 ---LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 65 ---~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
.-.++.+.|+||-|... .+...+...+ -..+|-.++++.+..+.+...++.+-.+..+ +. |++
T Consensus 194 ~vv~~aDklVsfVDtvGHEp------wLrTtirGL~---gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--Pvi 259 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEP------WLRTTIRGLL---GQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVI 259 (527)
T ss_pred HhhhhcccEEEEEecCCccH------HHHHHHHHHh---ccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEE
Confidence 01134578999999552 2222233222 3567999999999888888777776665543 22 999
Q ss_pred EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
+++||+|+..+ ..+...++. ...++...
T Consensus 260 VvvTK~D~~~d--dr~~~v~~e-----i~~~Lk~v 287 (527)
T COG5258 260 VVVTKIDMVPD--DRFQGVVEE-----ISALLKRV 287 (527)
T ss_pred EEEEecccCcH--HHHHHHHHH-----HHHHHHHh
Confidence 99999999987 666666665 55555443
No 390
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.20 E-value=1.2e-05 Score=62.36 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+..|
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTSG 57 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 5578999999999999999999998765554
No 391
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=1e-05 Score=62.62 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G 57 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG 57 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 35578999999999999999999998765544
No 392
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.19 E-value=4.4e-06 Score=68.69 Aligned_cols=70 Identities=26% Similarity=0.293 Sum_probs=45.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (277)
....+.|+|-+|+|||||||++-.......+ -...+.|...... +.......++++||||...+...+.+
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~~e 215 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVDVE 215 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCCHH
Confidence 4578999999999999999998543321111 1123444443322 22245566999999999987665544
No 393
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.18 E-value=3.5e-05 Score=60.93 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK--AFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|.. .+..|
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G 66 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG 66 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 355789999999999999999999976 54444
No 394
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.17 E-value=2.2e-05 Score=67.44 Aligned_cols=74 Identities=11% Similarity=0.138 Sum_probs=46.7
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~- 135 (277)
+.+..+.+||..|-.. ....+..++.++++++||+|++ .+. ..-...+..+..++...
T Consensus 181 ~~~~~~~~~DvgGqr~-----------~R~kW~~~f~~v~~IiFvvdlS-d~d~~~~Ed~~~nrl~esl~~f~~l~~~~~ 248 (342)
T smart00275 181 VKKLFFRMFDVGGQRS-----------ERKKWIHCFDNVTAIIFCVALS-EYDQVLEEDESTNRMQESLNLFESICNSRW 248 (342)
T ss_pred ECCeEEEEEecCCchh-----------hhhhHHHHhCCCCEEEEEEECc-ccccchhccCcchHHHHHHHHHHHHHcCcc
Confidence 4566788999988321 2223334567889999999998 331 11223344555554433
Q ss_pred -ccCcEEEEEeCCCCCC
Q 023779 136 -VFDYMIVVFTGGDDLE 151 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~~ 151 (277)
...|++|++||.|...
T Consensus 249 ~~~~piil~~NK~D~~~ 265 (342)
T smart00275 249 FANTSIILFLNKIDLFE 265 (342)
T ss_pred ccCCcEEEEEecHHhHH
Confidence 2249999999999654
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.17 E-value=6e-07 Score=78.79 Aligned_cols=128 Identities=19% Similarity=0.115 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEe-------CCCCCCCCCCchHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVID-------TPGLFDLSAGSEFVG 90 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liD-------tpG~~~~~~~~~~~~ 90 (277)
..-+|++|||+|+|||||++.++|.-.+..|......-....++...... -.-.| .|-+.+ ..-.
T Consensus 415 ~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e---~ldl~~s~le~~~~~~~~-----~~~~ 486 (614)
T KOG0927|consen 415 LDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE---QLDLDKSSLEFMMPKFPD-----EKEL 486 (614)
T ss_pred cccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh---hcCcchhHHHHHHHhccc-----cchH
Confidence 34689999999999999999999988877775443322222222110000 00111 011111 1123
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE----EeCCCCCCcccccHHHHhc
Q 023779 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV----FTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv----~nk~D~~~~~~~~l~~~l~ 162 (277)
+++...+..+ +.++-.-++..+ .++.+++..+-+....... |-+++ +|++|...- ..+.++++
T Consensus 487 e~~r~ilgrf--gLtgd~q~~p~~-~LS~Gqr~rVlFa~l~~kq----P~lLlLDEPtnhLDi~ti--d~laeaiN 553 (614)
T KOG0927|consen 487 EEMRSILGRF--GLTGDAQVVPMS-QLSDGQRRRVLFARLAVKQ----PHLLLLDEPTNHLDIETI--DALAEAIN 553 (614)
T ss_pred HHHHHHHHHh--CCCccccccchh-hcccccchhHHHHHHHhcC----CcEEEecCCCcCCCchhH--HHHHHHHh
Confidence 3455555443 333333444454 6667776665555554444 66666 699996443 34444444
No 396
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=0.00017 Score=63.64 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=42.0
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.|+||||... .+..+..++...... -.++.+++|+|+.. ..........+....+ ..-+|+||+
T Consensus 182 ~~DvVIIDTaGr~~---~d~~l~~eL~~i~~~--~~p~e~lLVvda~t--gq~~~~~a~~f~~~v~-----i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQ---IDEELMEELAAIKEI--LNPDEILLVVDAMT--GQDAVNTAKTFNERLG-----LTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCccc---cCHHHHHHHHHHHHh--hCCceEEEEEeccc--hHHHHHHHHHHHhhCC-----CCEEEEeCc
Confidence 35689999999764 233344444444332 25688899999761 1222223233332222 356789999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 250 D~~~~ 254 (428)
T TIGR00959 250 DGDAR 254 (428)
T ss_pred cCccc
Confidence 96544
No 397
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=1.9e-05 Score=70.39 Aligned_cols=32 Identities=31% Similarity=0.376 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++++|++|+|||||+|.|.|...+..|
T Consensus 345 ~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 45689999999999999999999998876555
No 398
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.12 E-value=8.9e-06 Score=67.21 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 35578999999999999999999998765444
No 399
>PRK01889 GTPase RsgA; Reviewed
Probab=98.12 E-value=2.6e-06 Score=73.60 Aligned_cols=30 Identities=43% Similarity=0.643 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+.+++|+|.+|+|||||+|+|+|...+.+|
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhccccee
Confidence 468999999999999999999987765554
No 400
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=2.5e-06 Score=69.76 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=91.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-CCCCCcceeeEEE----------------------------------E
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-AGSSGVTKTCEMK----------------------------------T 62 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~----------------------------------~ 62 (277)
..++|+-+|+...||||++++|.|.....-. .-....|...++. .
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 4589999999999999999999885421100 0001111111110 0
Q ss_pred Ee--eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh-hcCCCccEEEEEEeCCC----CCCHHHHHHHHHHHHHhCcC
Q 023779 63 TV--LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG-MAKDGIHAFLVVFSVTN----RFSQEEETAVHRLPNLFGKN 135 (277)
Q Consensus 63 ~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~d~~~----~~~~~~~~~~~~l~~~~~~~ 135 (277)
.. ..--+++.++|+||.+ +..+.- ....-.|+.++++.... +-+.+-...++..+.
T Consensus 117 ~~~~~klvRHVSfVDCPGHD------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L----- 179 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHD------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL----- 179 (466)
T ss_pred CCCceEEEEEEEeccCCchH------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh-----
Confidence 00 0112468899999943 222211 11122377777777762 222222232232221
Q ss_pred ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 136 VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 136 ~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
++++++-||+|.... ....+..++ ++.++..... .-.+..+.||.-..+++-+.++|-+.++..
T Consensus 180 --khiiilQNKiDli~e--~~A~eq~e~-----I~kFi~~t~a---e~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 180 --KHIIILQNKIDLIKE--SQALEQHEQ-----IQKFIQGTVA---EGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred --ceEEEEechhhhhhH--HHHHHHHHH-----HHHHHhcccc---CCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 389999999998866 333222232 5555543321 111223567778899999999999988754
No 401
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=3.3e-05 Score=66.65 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC 58 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~ 58 (277)
-+|+||||+|+|||||+..|+|.-.+..|......+..+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~i 652 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRI 652 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeee
Confidence 479999999999999999999987766554444434333
No 402
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.11 E-value=1.9e-05 Score=61.56 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 57 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG 57 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 35578999999999999999999998765554
No 403
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.11 E-value=1.9e-05 Score=63.54 Aligned_cols=32 Identities=31% Similarity=0.381 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999997655444
No 404
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.10 E-value=5.5e-06 Score=75.77 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+++|++|+|||||++.|+|...+..|
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 36689999999999999999999998776655
No 405
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.08 E-value=2.5e-05 Score=62.03 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.++-.++|+|++|+|||||++.|.|.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45578999999999999999999997
No 406
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.07 E-value=5.1e-06 Score=70.40 Aligned_cols=64 Identities=28% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
....++++|+|-+++||||+||+|.....-..|.. .+.|..-+.. .-+..+.|+|.||+.-...
T Consensus 249 lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqeV----~Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 249 LKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQEV----KLDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred cCcceEeeeecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhhe----eccCCceeccCCceeecCC
Confidence 35679999999999999999999987665444432 2334333222 4567789999999875443
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.06 E-value=0.0002 Score=55.43 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=41.1
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
+..+.++||||.... +.....++..... ...++.+++|+++... .........+.+..+ ..-+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456889999997532 2223333333322 1347999999998621 222233333333222 356778999
Q ss_pred CCCCc
Q 023779 148 DDLED 152 (277)
Q Consensus 148 D~~~~ 152 (277)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97755
No 408
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.06 E-value=1.3e-05 Score=64.43 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+-.++|+|++|+|||||++.|+|...+..|
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 35578999999999999999999998765555
No 409
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.9e-05 Score=65.16 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35578999999999999999999998765555
No 410
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=2.8e-05 Score=62.31 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 45678999999999999999999998765555
No 411
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.04 E-value=0.00031 Score=66.62 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..++|+|++|+|||||+++|.+.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 68999999999999999999875
No 412
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.04 E-value=4.9e-06 Score=63.38 Aligned_cols=31 Identities=32% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+.+++|+|++|+|||||+|.|.|...+.+|
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 4578999999999999999999998887766
No 413
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.03 E-value=5.7e-06 Score=66.34 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-.|+|+|++|||||||+|.|.|-..+..|
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998877666
No 414
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.02 E-value=1e-05 Score=65.95 Aligned_cols=32 Identities=25% Similarity=0.202 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 35578999999999999999999997655444
No 415
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.01 E-value=6.8e-05 Score=56.47 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 023779 22 VVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~ 41 (277)
|+++|++|+|||||+..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999998864
No 416
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.01 E-value=6.9e-06 Score=64.10 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=35.7
Q ss_pred CCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 2 GERVVDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++++.++.+... .++..++|+||+|+|||||++.|+|.-.+.+|
T Consensus 12 ~Gr~ll~~vsl~~--~pGev~ailGPNGAGKSTlLk~LsGel~p~~G 56 (259)
T COG4559 12 AGRRLLDGVSLDL--RPGEVLAILGPNGAGKSTLLKALSGELSPDSG 56 (259)
T ss_pred ecceeccCcceec--cCCcEEEEECCCCccHHHHHHHhhCccCCCCC
Confidence 3566677766655 34588999999999999999999998776665
No 417
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.01 E-value=9.2e-05 Score=57.75 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G 54 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG 54 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35678999999999999999999997654444
No 418
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.01 E-value=0.00011 Score=57.99 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
++..++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999864
No 419
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.00 E-value=8.5e-05 Score=66.09 Aligned_cols=28 Identities=29% Similarity=0.526 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
...+.|+|+|..++|||||+..|.|...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~ 50 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIED 50 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCC
Confidence 3458999999999999999999987553
No 420
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.00 E-value=7.9e-06 Score=68.75 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=58.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE--EeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
++..++|+|++|+|||||++.|+|...+.+|.. .....-.. .........++.+.|.+++.... .+...
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i----~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~-----~e~l~ 100 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI----LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTV-----RENLE 100 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE----EEcCEeCccCHHHHHhheEEEccCCCCCccccH-----HHHHH
Confidence 447899999999999999999999876554421 11000000 00112234678888887654332 22222
Q ss_pred HHhhcCCCc--------cEEEEEE------eCC-CCCCHHHHHHHHHHHHHhCc
Q 023779 96 CLGMAKDGI--------HAFLVVF------SVT-NRFSQEEETAVHRLPNLFGK 134 (277)
Q Consensus 96 ~~~~~~~~~--------~~~l~v~------d~~-~~~~~~~~~~~~~l~~~~~~ 134 (277)
++...+... +-++-.+ +.. ..++.+.++.+..+..+++.
T Consensus 101 ~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~ 154 (293)
T COG1131 101 FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHD 154 (293)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcC
Confidence 222221110 0000000 111 36778888888888887776
No 421
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=6e-05 Score=70.48 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+++|.+|||||||++.|+|...+..|
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35689999999999999999999998877666
No 422
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.98 E-value=7.6e-06 Score=65.27 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+.+-.|+|+|++|||||||+|.|.|-+.+.+|
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 45678999999999999999999988876555
No 423
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.98 E-value=4.7e-05 Score=61.09 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35688999999999999999999998765555
No 424
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.00013 Score=59.11 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++++|++|+|||||++.|.|-..+.+|
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 4578999999999999999999998876665
No 425
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=1.1e-05 Score=66.05 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 35578999999999999999999997655444
No 426
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.96 E-value=0.00024 Score=56.37 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
+.++|+|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 579999999999999999987
No 427
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.95 E-value=2.1e-05 Score=72.99 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++|+|++|+|||||++.|+|.. +..|
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 366899999999999999999999987 5555
No 428
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=6.2e-05 Score=64.98 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G 61 (351)
T PRK11432 31 QGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG 61 (351)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 4578999999999999999999998876665
No 429
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.94 E-value=3.8e-07 Score=69.05 Aligned_cols=162 Identities=16% Similarity=0.162 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc---eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ---VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
=.++.|+|.-|+|||+++...+-..+ +......+....... +..|+.. .+.|||..|-. ++-.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~~nf--s~~yRAtIgvdfalk-Vl~wdd~t~vRlqLwdIagQe-----------rfg~ 90 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVHQNF--SYHYRATIGVDFALK-VLQWDDKTIVRLQLWDIAGQE-----------RFGN 90 (229)
T ss_pred hhhhheeeeccccchhHHHHHHHHHH--HHHHHHHHhHHHHHH-HhccChHHHHHHHHhcchhhh-----------hhcc
Confidence 36899999999999999988763332 111111111111111 1124443 36699999832 3444
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHH-------hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNL-------FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (277)
....+|+.+++.++|+|++...+.+- ...|.+++ +|.++ |++++-||+|.... ...+ .-..
T Consensus 91 mtrVyykea~~~~iVfdvt~s~tfe~--~skwkqdldsk~qLpng~Pv--~~vllankCd~e~~--a~~~-~~~~----- 158 (229)
T KOG4423|consen 91 MTRVYYKEAHGAFIVFDVTRSLTFEP--VSKWKQDLDSKLQLPNGTPV--PCVLLANKCDQEKS--AKNE-ATRQ----- 158 (229)
T ss_pred eEEEEecCCcceEEEEEccccccccH--HHHHHHhccCcccCCCCCcc--hheeccchhccChH--hhhh-hHHH-----
Confidence 44557899999999999995544433 22333333 44444 88999999996544 1111 0000
Q ss_pred HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+..+.... -|..-...|++.+.++++....+-.++--+
T Consensus 159 ~d~f~ken-----gf~gwtets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 159 FDNFKKEN-----GFEGWTETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred HHHHHhcc-----CccceeeeccccccChhHHHHHHHHHHHhh
Confidence 22222211 122233567788888888877776655443
No 430
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.94 E-value=2.2e-06 Score=68.28 Aligned_cols=32 Identities=28% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++...+++|||+|+|||||+|.|+|...+..|
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 45678999999999999999999998877665
No 431
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.93 E-value=6.4e-05 Score=57.26 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=57.7
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
+...+|++++|+|++.++...+..+.+.+... .. ..|+++|+||+|...+ ..+..++.. + .....
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~-----~----~~~~~- 69 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI-----L----SKEYP- 69 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH-----H----hcCCc-
Confidence 45678999999999865555566666666653 21 1389999999998755 333333322 1 11111
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.. ....|+..+.++..|++.+....
T Consensus 70 ~~----~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TI----AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EE----EEEeeccccccHHHHHHHHHHHH
Confidence 11 12457777888999999987764
No 432
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.93 E-value=0.00025 Score=57.52 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 35679999999999999999999998765554
No 433
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.93 E-value=9.4e-05 Score=64.74 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-.=+|+|.+|+|||||++.|.|...+++|
T Consensus 29 ~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G 59 (501)
T COG3845 29 KGEIHALLGENGAGKSTLMKILFGLYQPDSG 59 (501)
T ss_pred CCcEEEEeccCCCCHHHHHHHHhCcccCCcc
Confidence 3456789999999999999999999887776
No 434
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.92 E-value=0.0016 Score=48.80 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=61.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC---CCccc-cCCCCCcceeeEEEEEeeeCCce--EEEEeCC----------CCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR---KAFKA-SAGSSGVTKTCEMKTTVLKDGQV--VNVIDTP----------GLFDL 82 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~---~~~~~-~~~~~~~t~~~~~~~~~~~~~~~--~~liDtp----------G~~~~ 82 (277)
..+|++.|++|+||||++..|... ..+.. |....... .++.. +.++|.. |+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR----------~gGkR~GF~Ivdl~tg~~~~la~~~~~~~ 74 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR----------EGGKRIGFKIVDLATGEEGILARVGFSRP 74 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee----------cCCeEeeeEEEEccCCceEEEEEcCCCCc
Confidence 479999999999999999887632 11111 11110000 11111 3344432 11111
Q ss_pred C-----CCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 83 S-----AGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 83 ~-----~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
. ...+.+.+-...++..++..+|+++ +|--.++......+.+.+.+.+..+. |++.++-+-+
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElks~~f~~~ve~vl~~~k--pliatlHrrs 141 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRALEEADVII--IDEIGPMELKSKKFREAVEEVLKSGK--PLIATLHRRS 141 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHhhcCCEEE--EecccchhhccHHHHHHHHHHhcCCC--cEEEEEeccc
Confidence 1 1112233344455555556667654 33333666666777788888876653 7777766554
No 435
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.92 E-value=9.1e-06 Score=75.85 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-+++|+|++|+|||||++.|+|...+..|
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 374 (635)
T PRK11147 343 QRGDKIALIGPNGCGKTTLLKLMLGQLQADSG 374 (635)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 35578999999999999999999998765555
No 436
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.92 E-value=0.00056 Score=59.13 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=78.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-----------------CccccCCCCCcceeeEEEE-----EeeeC--CceEE
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK-----------------AFKASAGSSGVTKTCEMKT-----TVLKD--GQVVN 72 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-----------------~~~~~~~~~~~t~~~~~~~-----~~~~~--~~~~~ 72 (277)
...+.|++|||..+||||||+.+...- .+.++.+..-.|+.....+ +...+ ..+++
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 455899999999999999999975432 2334444444444332221 22112 23578
Q ss_pred EEeCCCCCCCCCC--chHHHH------------HHHHHHhhc-----CCCcc-EEEEEEeCC-CC-----CCHHHHHHHH
Q 023779 73 VIDTPGLFDLSAG--SEFVGK------------EIVKCLGMA-----KDGIH-AFLVVFSVT-NR-----FSQEEETAVH 126 (277)
Q Consensus 73 liDtpG~~~~~~~--~~~~~~------------~~~~~~~~~-----~~~~~-~~l~v~d~~-~~-----~~~~~~~~~~ 126 (277)
+||+.|+.=.... .+.-.. =|..+.... ..++. ++++.-|.+ .. +-..+.+.++
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 8887776311100 000000 011111111 11222 345555544 22 2234567777
Q ss_pred HHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCC
Q 023779 127 RLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNK 186 (277)
Q Consensus 127 ~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (277)
.|+++ |+ |++|++|-.+-... +..+- ..++-++.+..+.+++-.
T Consensus 175 ELk~i-gK----PFvillNs~~P~s~------et~~L-----~~eL~ekY~vpVlpvnc~ 218 (492)
T PF09547_consen 175 ELKEI-GK----PFVILLNSTKPYSE------ETQEL-----AEELEEKYDVPVLPVNCE 218 (492)
T ss_pred HHHHh-CC----CEEEEEeCCCCCCH------HHHHH-----HHHHHHHhCCcEEEeehH
Confidence 77774 54 89999997763332 11111 234556667777765543
No 437
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=0.00033 Score=55.03 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
.....+++||+|||||||+.+|-+..-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 347899999999999999999876543
No 438
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.91 E-value=0.00011 Score=60.88 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 35678999999999999999999998765554
No 439
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.91 E-value=7.8e-05 Score=64.89 Aligned_cols=31 Identities=29% Similarity=0.385 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G 58 (369)
T PRK11000 28 EGEFVVFVGPSGCGKSTLLRMIAGLEDITSG 58 (369)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998765555
No 440
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.91 E-value=1.9e-05 Score=65.19 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 35678999999999999999999998765555
No 441
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.90 E-value=7.3e-05 Score=54.12 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~ 42 (277)
+|+++|..|+|||+++..+...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 7999999999999999998643
No 442
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=1.3e-05 Score=74.85 Aligned_cols=32 Identities=31% Similarity=0.328 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-+++|+|++|+|||||++.|+|...+.+|
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 367 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 35679999999999999999999998766565
No 443
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.89 E-value=1.1e-05 Score=64.55 Aligned_cols=105 Identities=17% Similarity=0.289 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
-+++++|.+.+||||++..|+|... .......|+-..+.....+.+-.+.+.|.||+.+......-..+++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s---~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---- 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS---EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---- 132 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC---ccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE----
Confidence 4899999999999999999998653 222223344444444555788899999999998755433322233222
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG 133 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~ 133 (277)
..+..+++++|+|+-.+++ -+.+++.-.+.||
T Consensus 133 vartcnli~~vld~~kp~~--hk~~ie~eleg~g 164 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVLKPLS--HKKIIEKELEGFG 164 (358)
T ss_pred EeecccEEEEEeeccCccc--HHHHHHHhhhcce
Confidence 2344488999999874433 2334444334444
No 444
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.87 E-value=8.1e-05 Score=66.81 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG 79 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG 79 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999998765554
No 445
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.87 E-value=3.8e-05 Score=70.91 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++++|++|+||||++|.|.+-..+..|
T Consensus 353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G 384 (567)
T COG1132 353 EPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG 384 (567)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 45689999999999999999999987765444
No 446
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.86 E-value=4.9e-05 Score=58.63 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
-++|.+.|++|||||||+..++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHH
Confidence 38999999999999999988764
No 447
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.85 E-value=1.2e-05 Score=59.72 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G 40 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLPPDSG 40 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSHESEE
T ss_pred CCCEEEEEccCCCccccceeeeccccccccc
Confidence 3468999999999999999999998765444
No 448
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.85 E-value=0.00029 Score=56.01 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++.+++|+|++|+|||||+++|.+
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHH
Confidence 447899999999999999999983
No 449
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.85 E-value=5.1e-05 Score=70.38 Aligned_cols=31 Identities=29% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++.+|+|+|++|+|||||++.|+|...+..|
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 5688999999999999999999998776555
No 450
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=4.9e-05 Score=60.32 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=30.0
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
...++|.++.|+|.+ .-+-.....+..|..-.+ .+++.+|+||+|..
T Consensus 152 ~~~~vD~vivVvDpS-~~sl~taeri~~L~~elg---~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPS-YKSLRTAERIKELAEELG---IKRIFVVLNKVDEE 198 (255)
T ss_pred cccCCCEEEEEeCCc-HHHHHHHHHHHHHHHHhC---CceEEEEEeeccch
Confidence 346789999999988 222223233333333344 35899999999954
No 451
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.84 E-value=2.8e-05 Score=68.11 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 35578999999999999999999997765554
No 452
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.84 E-value=1.3e-05 Score=68.03 Aligned_cols=64 Identities=27% Similarity=0.303 Sum_probs=42.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
..+.+-|++||-+|+||||+||+|-...+-...+ ..+.|...++.. --+.+.|||+||......
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAP-IpGETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAP-IPGETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccC-CCCcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 4567889999999999999999997666522211 122232222221 235688999999976553
No 453
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.84 E-value=5.4e-05 Score=65.56 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+..|
T Consensus 22 ~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G 52 (354)
T TIGR02142 22 GQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG 52 (354)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998765555
No 454
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=9.2e-05 Score=64.09 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 29 ~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G 59 (356)
T PRK11650 29 DGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59 (356)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHCCCCCCce
Confidence 4568999999999999999999998766555
No 455
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.83 E-value=2.7e-05 Score=62.14 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|||||||.+.|.|-..+..|
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 35678999999999999999999998876666
No 456
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.82 E-value=1.7e-05 Score=73.27 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEE-----------------------------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKT----------------------------------- 62 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~----------------------------------- 62 (277)
.-+.|+++|..++||||.++++.|..+.+.|.... |...-+..
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~giv--TRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIV--TRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhccccccccccce--ecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 33679999999999999999999988766553211 11100000
Q ss_pred --------------------EeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHH
Q 023779 63 --------------------TVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQE 120 (277)
Q Consensus 63 --------------------~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~ 120 (277)
.....--.++++|.||+..... ....+..++......+...++++++.+... ...-.
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~a-n~d~a 184 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPA-NSDIA 184 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccch-hhhhh
Confidence 0001112478999999975443 345677788888877778888887776665 22223
Q ss_pred HHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 121 EETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 121 ~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
....+..+++.-... ..++.|+||+|....
T Consensus 185 ts~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 185 TSPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred cCHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 344566666653222 378899999997654
No 457
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.82 E-value=0.00016 Score=62.65 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+..++|+|++|+|||||++.|.|...+.+|
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G 48 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG 48 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999998776555
No 458
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.82 E-value=3.9e-05 Score=72.48 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+|+|++|+|||||++.|+|...+..|
T Consensus 477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 477 EPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 35689999999999999999999998876665
No 459
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=5.9e-05 Score=59.93 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=68.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+++|+++|.-.+||||.-+...-...+ ...-....|......++. ..-..+.+||-||..+...+.... ..
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsP-neTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D~----e~-- 97 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFDY----EM-- 97 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCC-CceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccCH----HH--
Confidence 4477999999999999998877633221 111111111111111111 122357899999987655433221 11
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
.+++..+++||+|+...+...-.+....+.....-....++=|.+.|+|.+.+
T Consensus 98 --iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 98 --IFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred --HHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 23456899999999732222112222222332333333466688999998865
No 460
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.82 E-value=4e-05 Score=70.83 Aligned_cols=32 Identities=31% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++|+|++|+|||||++.|+|...+..|
T Consensus 364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35679999999999999999999998766655
No 461
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.81 E-value=0.00019 Score=54.56 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|.|...+..|
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G 54 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSG 54 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 4478999999999999999999987654333
No 462
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.81 E-value=0.00012 Score=64.26 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 35578999999999999999999998765555
No 463
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=2.3e-05 Score=62.75 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35578999999999999999999998765554
No 464
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.81 E-value=4.5e-05 Score=70.49 Aligned_cols=32 Identities=34% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+|+|++|+|||||++.|+|...+..|
T Consensus 356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 35689999999999999999999998876655
No 465
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.80 E-value=3.7e-05 Score=70.00 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+..|
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G 66 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDSG 66 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998765554
No 466
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=2.3e-05 Score=63.89 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999998765554
No 467
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.80 E-value=8.1e-05 Score=62.25 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=68.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-------------CccccCCC----CCcceeeEEEEEe---------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK-------------AFKASAGS----SGVTKTCEMKTTV--------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-------------~~~~~~~~----~~~t~~~~~~~~~--------------- 64 (277)
+++..|+++|-+|+||||.|-.|.... .|..+... ++....+.+....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 346899999999999999998875211 12111000 0000001111000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc---C-CCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA---K-DGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (277)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (277)
...+..+.|+||.|=... ...+..++.+...-. . ..||-+++++|+..+ .....-.+.+.+..+ -
T Consensus 217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~-----l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVG-----L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcC-----C
Confidence 012456899999996543 334455555444332 2 345779999998722 122233344444433 2
Q ss_pred EEEEEeCCCCCCc
Q 023779 140 MIVVFTGGDDLED 152 (277)
Q Consensus 140 ~ivv~nk~D~~~~ 152 (277)
.-+++||+|....
T Consensus 287 ~GiIlTKlDgtAK 299 (340)
T COG0552 287 DGIILTKLDGTAK 299 (340)
T ss_pred ceEEEEecccCCC
Confidence 4578999995544
No 468
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.79 E-value=2.5e-05 Score=62.71 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG 42 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCC
Confidence 4578999999999999999999998765555
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=0.00052 Score=54.59 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
+++..++|+|++|+|||||++.|+|...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3557999999999999999999999765
No 470
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.79 E-value=2.4e-05 Score=62.51 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+-+|+|+|++|+|||||++.|.|...|++|
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 45689999999999999999999998887766
No 471
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.79 E-value=7.8e-05 Score=62.98 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=56.4
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHH--HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKC--LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
..++|||..|... +.+. +..+-.-+|.-.+++-+..++-...++.+-+...+ .+ |+++|+||
T Consensus 219 KviTFIDLAGHEk-----------YLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL---~V--PVfvVVTK 282 (641)
T KOG0463|consen 219 KVITFIDLAGHEK-----------YLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALAL---HV--PVFVVVTK 282 (641)
T ss_pred eeEEEEeccchhh-----------hhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhh---cC--cEEEEEEe
Confidence 4578999988432 1111 11122446777777777766666677666655554 22 89999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+|+... ..+.+.++. +..++...|.
T Consensus 283 IDMCPA--NiLqEtmKl-----l~rllkS~gc 307 (641)
T KOG0463|consen 283 IDMCPA--NILQETMKL-----LTRLLKSPGC 307 (641)
T ss_pred eccCcH--HHHHHHHHH-----HHHHhcCCCc
Confidence 998877 566666655 7777777543
No 472
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=0.00012 Score=63.46 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-.++|+|++|+|||||++.|+|...+.+|
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G 53 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQKG 53 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999998765555
No 473
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.79 E-value=4.7e-05 Score=72.23 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+|+|++|+|||||++.|+|...+..|
T Consensus 503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35689999999999999999999998776555
No 474
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.79 E-value=0.00046 Score=55.33 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-+.+|+|++|+|||||++.++|..++.++
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg 86 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 4467899999999999999999998875443
No 475
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.78 E-value=2.6e-05 Score=62.23 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35578999999999999999999998765555
No 476
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.78 E-value=2.6e-05 Score=62.82 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 35578999999999999999999998765544
No 477
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.78 E-value=2.8e-05 Score=61.25 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999997665444
No 478
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=2.7e-05 Score=62.82 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999997655544
No 479
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.78 E-value=7.1e-05 Score=68.52 Aligned_cols=32 Identities=31% Similarity=0.347 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++++|++|+|||||++.|+|...+..|
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 377 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35689999999999999999999998776555
No 480
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.78 E-value=2.6e-05 Score=66.11 Aligned_cols=31 Identities=35% Similarity=0.392 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+||+|||||||++.|.|-..+.+|
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998876666
No 481
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.77 E-value=2.9e-05 Score=62.36 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35578999999999999999999998654444
No 482
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=2.6e-05 Score=66.31 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcc----------------------cc-------CCCCCcceeeEEEEEee
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFK----------------------AS-------AGSSGVTKTCEMKTTVL 65 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~----------------------~~-------~~~~~~t~~~~~~~~~~ 65 (277)
+.....++.++|+..+||||.-..|+...... +. .-..+-|+......+.
T Consensus 75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE- 153 (501)
T KOG0459|consen 75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE- 153 (501)
T ss_pred CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE-
Confidence 33456899999999999999988776322100 00 0011344455555444
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-C----CCCHH-HHHHHHHHHHHhCcCccCc
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-N----RFSQE-EETAVHRLPNLFGKNVFDY 139 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~----~~~~~-~~~~~~~l~~~~~~~~~~~ 139 (277)
...+.+++.|+||.-.+. ...+ ....++|+-++|+++. . +|..+ +.+--..+.+..|. ++
T Consensus 154 te~~~ftiLDApGHk~fv----------~nmI-~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~ 219 (501)
T KOG0459|consen 154 TENKRFTILDAPGHKSFV----------PNMI-GGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KH 219 (501)
T ss_pred ecceeEEeeccCcccccc----------hhhc-cccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ce
Confidence 456789999999966431 1222 2234668888887774 1 22222 23333345555454 38
Q ss_pred EEEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcC
Q 023779 140 MIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 140 ~ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
+|+++||+|.... ..+.++++... +..++...|
T Consensus 220 lVv~vNKMddPtvnWs~eRy~E~~~k-----~~~fLr~~g 254 (501)
T KOG0459|consen 220 LIVLINKMDDPTVNWSNERYEECKEK-----LQPFLRKLG 254 (501)
T ss_pred EEEEEEeccCCccCcchhhHHHHHHH-----HHHHHHHhc
Confidence 9999999995533 22455555554 666666555
No 483
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=2.8e-05 Score=62.35 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=27.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+.+|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 35578999999999999999999998765554
No 484
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.76 E-value=5e-05 Score=70.48 Aligned_cols=32 Identities=28% Similarity=0.469 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+|+|+|++|+|||||++.|+|...+..|
T Consensus 365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G 396 (592)
T PRK10790 365 PSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396 (592)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 35689999999999999999999998876655
No 485
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.76 E-value=6.2e-05 Score=69.51 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++|+|++|+|||||++.|+|...+..|
T Consensus 339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 339 KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 45679999999999999999999998766555
No 486
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.75 E-value=6.4e-05 Score=69.64 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++.+++|+|++|+|||||++.|+|...+..|
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G 398 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence 5678999999999999999999998876665
No 487
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.74 E-value=3.4e-05 Score=61.86 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35578999999999999999999998765444
No 488
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.74 E-value=3.4e-05 Score=61.76 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35578999999999999999999997655444
No 489
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.74 E-value=3.4e-05 Score=61.90 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 35578999999999999999999998765554
No 490
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.74 E-value=3.5e-05 Score=62.20 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35578999999999999999999998765554
No 491
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.73 E-value=3.4e-05 Score=61.56 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++-.++|+|++|+|||||++.|+|...+..|
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4578999999999999999999998765444
No 492
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.73 E-value=3.7e-05 Score=60.93 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|+|...+..|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 35578999999999999999999997655444
No 493
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.73 E-value=9.3e-05 Score=58.95 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++-.++|+|++|+|||||++.|+|...+.+|
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G 60 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence 35578999999999999999999998765554
No 494
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.73 E-value=3.7e-05 Score=60.82 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765554
No 495
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.73 E-value=7.6e-05 Score=68.59 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++|+|++|+|||||++.|+|...+..|
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G 378 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG 378 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 36689999999999999999999998766555
No 496
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.73 E-value=3.3e-05 Score=61.90 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++|+|++|+|||||++.|+|...+..|
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 8999999999999999999997665454
No 497
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.73 E-value=3.8e-05 Score=61.02 Aligned_cols=32 Identities=22% Similarity=0.195 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++..++|+|++|+|||||++.|+|...+..|
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 35689999999999999999999998765554
No 498
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.00017 Score=64.00 Aligned_cols=138 Identities=17% Similarity=0.036 Sum_probs=67.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-CC-----cceeeEEEEEeeeCCceEEEEeC---
Q 023779 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-SG-----VTKTCEMKTTVLKDGQVVNVIDT--- 76 (277)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-~~-----~t~~~~~~~~~~~~~~~~~liDt--- 76 (277)
+-.+..+.- +.+.+|+++|++|+||||+++.|++-.- .+|... .+ .+...-...+.........+=||
T Consensus 367 iL~gvsf~I--~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~ 443 (591)
T KOG0057|consen 367 VLKGVSFTI--PKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILY 443 (591)
T ss_pred eecceeEEe--cCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHH
Confidence 334433333 4568999999999999999999986433 222110 00 01000000001011111222222
Q ss_pred -CCCCCCCCCchHHHHHHHHHHh--hcCCCccEE-EEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE---EeCCCC
Q 023779 77 -PGLFDLSAGSEFVGKEIVKCLG--MAKDGIHAF-LVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV---FTGGDD 149 (277)
Q Consensus 77 -pG~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv---~nk~D~ 149 (277)
-.++....+++++.+...++-. ...+-+++. -.|-.-...+++++++.+...+.+.+.. |++++ +++.|.
T Consensus 444 NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda---~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 444 NIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA---PILLLDEATSALDS 520 (591)
T ss_pred HhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC---CeEEecCcccccch
Confidence 2233444445554443332210 001112221 1122222468888999988888876654 77776 556653
No 499
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.72 E-value=3.6e-05 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4578999999999999999999997654444
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.72 E-value=3.8e-05 Score=62.02 Aligned_cols=32 Identities=31% Similarity=0.472 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++-.++|+|++|+|||||++.|.|...+..|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35678999999999999999999998765444
Done!