Query 023779
Match_columns 277
No_of_seqs 197 out of 2904
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 12:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxw_A GTPase IMAP family memb 100.0 1E-30 3.5E-35 213.7 20.9 205 17-227 19-225 (247)
2 3lxx_A GTPase IMAP family memb 100.0 1.7E-30 5.8E-35 211.6 19.1 207 15-227 25-231 (239)
3 2xtp_A GTPase IMAP family memb 100.0 2.8E-28 9.6E-33 201.0 24.3 205 14-224 17-222 (260)
4 3iev_A GTP-binding protein ERA 99.9 2.4E-22 8.2E-27 169.2 16.3 181 13-218 4-189 (308)
5 1wf3_A GTP-binding protein; GT 99.9 1.7E-21 5.9E-26 163.1 19.3 167 18-210 6-173 (301)
6 4dhe_A Probable GTP-binding pr 99.9 1.2E-21 4.2E-26 157.3 16.6 176 16-210 26-211 (223)
7 1svi_A GTP-binding protein YSX 99.9 2.7E-20 9.3E-25 146.2 19.4 172 15-209 19-194 (195)
8 3pqc_A Probable GTP-binding pr 99.9 1.1E-19 3.7E-24 142.5 20.8 173 15-210 19-194 (195)
9 3def_A T7I23.11 protein; chlor 99.9 9.7E-21 3.3E-25 155.9 15.0 154 18-176 35-189 (262)
10 1h65_A Chloroplast outer envel 99.8 8.4E-20 2.9E-24 151.0 19.6 196 18-218 38-253 (270)
11 2qu8_A Putative nucleolar GTP- 99.8 6.9E-19 2.4E-23 141.8 17.2 176 17-210 27-205 (228)
12 3t5d_A Septin-7; GTP-binding p 99.8 4.4E-19 1.5E-23 146.9 14.9 173 19-210 8-204 (274)
13 2gj8_A MNME, tRNA modification 99.8 1.1E-19 3.8E-24 140.1 10.1 163 18-209 3-165 (172)
14 1ega_A Protein (GTP-binding pr 99.8 2.7E-19 9.3E-24 149.9 12.7 168 18-210 7-175 (301)
15 4bas_A ADP-ribosylation factor 99.8 2E-18 6.7E-23 135.9 16.9 172 12-211 10-190 (199)
16 2dyk_A GTP-binding protein; GT 99.8 7.3E-19 2.5E-23 133.5 13.0 159 20-208 2-160 (161)
17 1z08_A RAS-related protein RAB 99.8 1.7E-18 5.7E-23 132.7 14.9 161 18-209 5-168 (170)
18 2lkc_A Translation initiation 99.8 1.1E-18 3.8E-23 134.8 14.0 166 17-210 6-171 (178)
19 2gf9_A RAS-related protein RAB 99.8 5.2E-19 1.8E-23 138.3 12.2 164 16-210 19-185 (189)
20 1z0f_A RAB14, member RAS oncog 99.8 7.7E-19 2.6E-23 135.7 12.5 162 17-209 13-177 (179)
21 3k53_A Ferrous iron transport 99.8 2.2E-17 7.6E-22 136.5 22.0 165 19-211 3-167 (271)
22 3tw8_B RAS-related protein RAB 99.8 6.5E-19 2.2E-23 136.3 12.0 162 17-210 7-171 (181)
23 2h57_A ADP-ribosylation factor 99.8 3.1E-19 1E-23 139.7 10.2 163 17-209 19-186 (190)
24 2efe_B Small GTP-binding prote 99.8 4.7E-19 1.6E-23 137.3 11.1 164 16-210 9-175 (181)
25 1upt_A ARL1, ADP-ribosylation 99.8 2E-18 6.8E-23 132.4 14.5 162 17-210 5-169 (171)
26 2hjg_A GTP-binding protein ENG 99.8 4.8E-19 1.6E-23 156.0 12.2 181 17-215 173-354 (436)
27 2il1_A RAB12; G-protein, GDP, 99.8 5.3E-19 1.8E-23 138.7 10.8 166 14-210 21-190 (192)
28 2h17_A ADP-ribosylation factor 99.8 1.9E-19 6.5E-24 139.8 8.2 174 1-206 1-179 (181)
29 4dcu_A GTP-binding protein ENG 99.8 8.3E-19 2.8E-23 155.3 13.3 186 17-220 193-379 (456)
30 1ksh_A ARF-like protein 2; sma 99.8 2.7E-18 9.2E-23 133.7 14.3 162 17-210 16-180 (186)
31 1z0j_A RAB-22, RAS-related pro 99.8 5.4E-19 1.9E-23 135.4 10.1 160 18-209 5-168 (170)
32 1zbd_A Rabphilin-3A; G protein 99.8 2.1E-18 7.2E-23 136.3 13.6 162 18-210 7-171 (203)
33 3tkl_A RAS-related protein RAB 99.8 1.7E-18 5.7E-23 135.9 12.9 164 17-211 14-180 (196)
34 2fg5_A RAB-22B, RAS-related pr 99.8 1E-18 3.4E-23 137.1 11.3 165 17-210 21-186 (192)
35 2g6b_A RAS-related protein RAB 99.8 3E-18 1E-22 132.6 13.9 164 17-210 8-174 (180)
36 1ky3_A GTP-binding protein YPT 99.8 2E-18 7E-23 133.6 13.0 166 17-210 6-178 (182)
37 1zd9_A ADP-ribosylation factor 99.8 9.8E-19 3.4E-23 136.7 11.2 163 17-210 20-185 (188)
38 1r2q_A RAS-related protein RAB 99.8 9.8E-19 3.4E-23 133.8 11.0 160 19-209 6-168 (170)
39 3oes_A GTPase rhebl1; small GT 99.8 1.8E-18 6.2E-23 136.6 12.8 169 12-211 17-188 (201)
40 2bme_A RAB4A, RAS-related prot 99.8 6.3E-18 2.2E-22 131.5 15.4 163 17-210 8-173 (186)
41 3iby_A Ferrous iron transport 99.8 3.1E-18 1E-22 140.2 14.1 161 20-207 2-164 (256)
42 1mky_A Probable GTP-binding pr 99.8 2.2E-18 7.7E-23 151.8 13.8 165 20-210 2-166 (439)
43 1ek0_A Protein (GTP-binding pr 99.8 3.2E-19 1.1E-23 136.5 7.3 162 19-208 3-167 (170)
44 1z06_A RAS-related protein RAB 99.8 1.9E-18 6.6E-23 135.0 11.8 167 13-209 14-187 (189)
45 3reg_A RHO-like small GTPase; 99.8 1.3E-18 4.4E-23 136.6 10.7 163 17-211 21-189 (194)
46 3t5g_A GTP-binding protein RHE 99.8 2.8E-17 9.4E-22 127.4 18.2 164 18-212 5-171 (181)
47 3i8s_A Ferrous iron transport 99.8 1.2E-17 4E-22 138.2 17.0 166 19-211 3-170 (274)
48 1g16_A RAS-related protein SEC 99.8 6.7E-19 2.3E-23 134.8 8.8 161 18-210 2-165 (170)
49 4dkx_A RAS-related protein RAB 99.8 1.2E-18 4.2E-23 138.9 10.4 161 18-209 12-175 (216)
50 3dz8_A RAS-related protein RAB 99.8 7.3E-19 2.5E-23 137.7 9.0 164 18-210 22-186 (191)
51 3a1s_A Iron(II) transport prot 99.8 1.7E-17 5.9E-22 136.0 17.5 164 18-210 4-167 (258)
52 2hup_A RAS-related protein RAB 99.8 7.9E-18 2.7E-22 133.0 14.9 165 17-212 27-195 (201)
53 2a5j_A RAS-related protein RAB 99.8 9.7E-19 3.3E-23 137.0 9.5 161 18-209 20-183 (191)
54 3bc1_A RAS-related protein RAB 99.8 1.1E-17 3.8E-22 130.8 15.5 164 17-209 9-184 (195)
55 1r8s_A ADP-ribosylation factor 99.8 3.6E-18 1.2E-22 130.1 12.3 158 20-209 1-161 (164)
56 3q72_A GTP-binding protein RAD 99.8 6.6E-18 2.3E-22 128.9 13.8 160 19-210 2-164 (166)
57 2p5s_A RAS and EF-hand domain 99.8 5.3E-19 1.8E-23 139.5 7.8 168 17-209 26-196 (199)
58 2j1l_A RHO-related GTP-binding 99.8 1.3E-17 4.5E-22 133.0 16.0 168 18-211 33-210 (214)
59 2fh5_B SR-beta, signal recogni 99.8 5.9E-18 2E-22 134.9 13.9 117 18-152 6-130 (214)
60 2bcg_Y Protein YP2, GTP-bindin 99.8 3.2E-18 1.1E-22 135.6 12.2 163 17-210 6-171 (206)
61 1wms_A RAB-9, RAB9, RAS-relate 99.8 6.9E-18 2.4E-22 130.2 13.8 164 17-210 5-174 (177)
62 2erx_A GTP-binding protein DI- 99.8 2.5E-18 8.5E-23 131.8 11.2 162 19-210 3-167 (172)
63 2oil_A CATX-8, RAS-related pro 99.8 1.8E-18 6E-23 135.7 10.3 163 18-210 24-188 (193)
64 1kao_A RAP2A; GTP-binding prot 99.8 1.4E-17 4.7E-22 126.9 15.0 161 19-210 3-166 (167)
65 2nzj_A GTP-binding protein REM 99.8 1.2E-17 4.2E-22 128.4 14.8 164 18-210 3-169 (175)
66 3clv_A RAB5 protein, putative; 99.8 4.2E-18 1.4E-22 134.4 12.4 160 17-210 5-204 (208)
67 2bov_A RAla, RAS-related prote 99.8 2E-17 6.9E-22 130.8 16.2 165 15-210 10-177 (206)
68 3cph_A RAS-related protein SEC 99.8 2.6E-18 8.8E-23 136.7 11.1 164 15-210 16-182 (213)
69 4dsu_A GTPase KRAS, isoform 2B 99.8 7.3E-18 2.5E-22 131.4 13.3 160 19-210 4-166 (189)
70 2fn4_A P23, RAS-related protei 99.8 2.7E-17 9.2E-22 127.2 16.4 165 15-211 5-173 (181)
71 1jwy_B Dynamin A GTPase domain 99.8 1.5E-17 5E-22 140.5 16.0 176 18-210 23-262 (315)
72 2ew1_A RAS-related protein RAB 99.8 5E-18 1.7E-22 134.1 12.2 162 18-210 25-189 (201)
73 2fu5_C RAS-related protein RAB 99.8 2.9E-18 9.9E-23 133.1 10.6 162 18-210 7-171 (183)
74 3con_A GTPase NRAS; structural 99.8 2.2E-17 7.6E-22 129.0 15.6 162 18-211 20-184 (190)
75 1u8z_A RAS-related protein RAL 99.8 1.2E-17 4.2E-22 127.3 13.5 161 18-209 3-166 (168)
76 2a9k_A RAS-related protein RAL 99.8 1.4E-17 4.6E-22 129.5 13.8 163 17-210 16-181 (187)
77 2q3h_A RAS homolog gene family 99.8 1.3E-17 4.5E-22 131.5 13.8 173 12-210 13-195 (201)
78 4djt_A GTP-binding nuclear pro 99.8 6.3E-19 2.2E-23 140.9 5.6 166 17-212 9-177 (218)
79 2gf0_A GTP-binding protein DI- 99.7 4.5E-18 1.5E-22 133.8 10.1 163 18-211 7-172 (199)
80 2o52_A RAS-related protein RAB 99.7 7.6E-18 2.6E-22 133.0 11.4 162 18-210 24-188 (200)
81 1z2a_A RAS-related protein RAB 99.7 2.7E-18 9.3E-23 131.2 8.6 160 18-209 4-166 (168)
82 3llu_A RAS-related GTP-binding 99.7 6.2E-18 2.1E-22 133.0 10.8 173 13-207 14-194 (196)
83 2wji_A Ferrous iron transport 99.7 1.4E-17 4.9E-22 127.2 12.6 161 19-208 3-163 (165)
84 1zj6_A ADP-ribosylation factor 99.7 1.8E-17 6.3E-22 129.2 12.9 161 17-210 14-178 (187)
85 3kkq_A RAS-related protein M-R 99.7 1.2E-17 4E-22 129.7 11.6 165 15-210 14-182 (183)
86 4gzl_A RAS-related C3 botulinu 99.7 7.9E-18 2.7E-22 133.3 10.8 166 17-207 28-202 (204)
87 4dcu_A GTP-binding protein ENG 99.7 2.2E-18 7.4E-23 152.7 8.2 163 18-209 22-184 (456)
88 2y8e_A RAB-protein 6, GH09086P 99.7 2.2E-18 7.6E-23 133.1 7.3 161 18-209 13-176 (179)
89 2x77_A ADP-ribosylation factor 99.7 2.4E-17 8E-22 128.8 13.1 163 17-211 20-185 (189)
90 2gco_A H9, RHO-related GTP-bin 99.7 2E-17 6.7E-22 130.6 12.8 166 17-208 23-198 (201)
91 2yc2_C IFT27, small RAB-relate 99.7 6.9E-18 2.3E-22 133.6 10.0 162 17-209 18-191 (208)
92 1vg8_A RAS-related protein RAB 99.7 9.2E-18 3.1E-22 132.9 10.7 164 17-210 6-175 (207)
93 3cbq_A GTP-binding protein REM 99.7 2.5E-17 8.7E-22 129.4 13.2 170 13-211 17-189 (195)
94 1fzq_A ADP-ribosylation factor 99.7 1.5E-17 5.2E-22 129.1 11.7 161 17-209 14-177 (181)
95 3c5c_A RAS-like protein 12; GD 99.7 1.4E-17 4.8E-22 130.0 11.5 165 14-209 16-185 (187)
96 2b6h_A ADP-ribosylation factor 99.7 9.8E-18 3.3E-22 131.5 10.6 161 17-209 27-190 (192)
97 3q3j_B RHO-related GTP-binding 99.7 2.4E-17 8.1E-22 131.5 12.7 169 16-210 24-203 (214)
98 2wjg_A FEOB, ferrous iron tran 99.7 4.6E-17 1.6E-21 126.9 14.1 166 18-212 6-171 (188)
99 2hjg_A GTP-binding protein ENG 99.7 2.6E-18 8.9E-23 151.3 7.8 162 20-210 4-165 (436)
100 1moz_A ARL1, ADP-ribosylation 99.7 1.3E-17 4.6E-22 129.3 11.0 160 17-210 16-180 (183)
101 3b1v_A Ferrous iron uptake tra 99.7 6E-17 2.1E-21 133.5 15.4 162 19-210 3-164 (272)
102 1x3s_A RAS-related protein RAB 99.7 8.7E-18 3E-22 131.7 9.9 162 18-210 14-178 (195)
103 1mky_A Probable GTP-binding pr 99.7 2.8E-17 9.6E-22 144.8 14.3 176 18-215 179-360 (439)
104 1c1y_A RAS-related protein RAP 99.7 8.4E-17 2.9E-21 122.7 15.2 159 19-208 3-165 (167)
105 3q85_A GTP-binding protein REM 99.7 2.1E-17 7.2E-22 126.5 11.8 162 20-210 3-167 (169)
106 3gee_A MNME, tRNA modification 99.7 8.5E-17 2.9E-21 142.3 17.3 163 19-209 233-397 (476)
107 3ihw_A Centg3; RAS, centaurin, 99.7 2.4E-17 8.2E-22 128.4 12.2 162 14-210 15-180 (184)
108 2iwr_A Centaurin gamma 1; ANK 99.7 2.3E-17 8E-22 127.4 11.8 157 17-209 5-168 (178)
109 3cpj_B GTP-binding protein YPT 99.7 1.4E-17 4.6E-22 133.8 10.7 163 17-210 11-176 (223)
110 2ce2_X GTPase HRAS; signaling 99.7 2.8E-17 9.6E-22 125.0 12.0 159 19-209 3-164 (166)
111 2atx_A Small GTP binding prote 99.7 4.5E-17 1.6E-21 127.7 13.2 166 18-209 17-192 (194)
112 2hxs_A RAB-26, RAS-related pro 99.7 5.9E-18 2E-22 130.7 8.0 164 18-210 5-173 (178)
113 2f7s_A C25KG, RAS-related prot 99.7 3.1E-17 1.1E-21 131.0 12.1 160 18-209 24-198 (217)
114 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.2E-17 1.8E-21 126.2 13.0 167 18-210 4-180 (186)
115 1wb1_A Translation elongation 99.7 1E-16 3.5E-21 142.5 16.3 163 18-210 18-189 (482)
116 3o47_A ADP-ribosylation factor 99.7 1.7E-17 5.7E-22 140.8 10.8 161 18-210 164-327 (329)
117 3t1o_A Gliding protein MGLA; G 99.7 4.7E-17 1.6E-21 127.6 12.7 166 17-210 12-192 (198)
118 1gwn_A RHO-related GTP-binding 99.7 7.1E-17 2.4E-21 127.9 13.4 167 17-208 26-202 (205)
119 2j69_A Bacterial dynamin-like 99.7 4.2E-17 1.4E-21 150.8 13.9 122 18-152 68-245 (695)
120 3geh_A MNME, tRNA modification 99.7 2.1E-17 7.2E-22 145.6 11.0 163 18-211 223-385 (462)
121 1m7b_A RND3/RHOE small GTP-bin 99.7 1.1E-16 3.9E-21 124.4 14.0 167 17-208 5-181 (184)
122 2cxx_A Probable GTP-binding pr 99.7 1.1E-16 3.9E-21 124.7 13.9 170 20-211 2-185 (190)
123 2fv8_A H6, RHO-related GTP-bin 99.7 3.6E-17 1.2E-21 129.8 11.2 167 18-210 24-200 (207)
124 1m2o_B GTP-binding protein SAR 99.7 1.8E-17 6.1E-22 129.8 9.3 156 17-206 21-188 (190)
125 2e87_A Hypothetical protein PH 99.7 6E-16 2.1E-20 132.8 19.6 168 17-210 165-336 (357)
126 1lnz_A SPO0B-associated GTP-bi 99.7 1.8E-17 6.3E-22 140.6 9.3 169 21-213 160-333 (342)
127 2aka_B Dynamin-1; fusion prote 99.7 3E-16 1E-20 131.4 16.4 175 16-207 23-250 (299)
128 1f6b_A SAR1; gtpases, N-termin 99.7 5.4E-17 1.9E-21 127.8 11.0 157 17-207 23-196 (198)
129 2atv_A RERG, RAS-like estrogen 99.7 2.2E-16 7.6E-21 124.0 14.2 162 17-210 26-191 (196)
130 3bwd_D RAC-like GTP-binding pr 99.7 2.3E-17 7.7E-22 127.8 8.2 166 17-208 6-179 (182)
131 2j0v_A RAC-like GTP-binding pr 99.7 1E-16 3.5E-21 127.5 11.7 168 17-210 7-180 (212)
132 3gj0_A GTP-binding nuclear pro 99.7 5E-18 1.7E-22 136.0 4.1 164 16-211 12-176 (221)
133 3r7w_A Gtpase1, GTP-binding pr 99.7 5E-16 1.7E-20 130.5 16.5 126 18-151 2-129 (307)
134 1xzp_A Probable tRNA modificat 99.7 5.3E-16 1.8E-20 137.3 16.4 160 19-209 243-404 (482)
135 3t34_A Dynamin-related protein 99.7 1.7E-16 5.9E-21 136.4 12.9 130 20-152 35-218 (360)
136 3l0i_B RAS-related protein RAB 99.7 7E-19 2.4E-23 138.8 -2.1 163 17-210 31-196 (199)
137 1s0u_A EIF-2-gamma, translatio 99.7 1.7E-15 5.7E-20 132.3 18.8 166 17-210 6-198 (408)
138 3qq5_A Small GTP-binding prote 99.7 2.7E-17 9.2E-22 143.2 7.3 166 15-210 30-196 (423)
139 3zvr_A Dynamin-1; hydrolase, D 99.7 1.3E-15 4.3E-20 140.4 18.5 171 19-206 51-274 (772)
140 3sjy_A Translation initiation 99.7 1.7E-16 5.9E-21 138.3 12.1 168 18-210 7-192 (403)
141 2x2e_A Dynamin-1; nitration, h 99.7 2E-15 6.7E-20 129.4 18.4 173 18-206 30-254 (353)
142 1kk1_A EIF2gamma; initiation o 99.7 1.2E-15 4.2E-20 133.3 17.1 165 18-210 9-200 (410)
143 2zej_A Dardarin, leucine-rich 99.7 2.5E-16 8.7E-21 122.5 11.2 170 19-210 2-178 (184)
144 3j2k_7 ERF3, eukaryotic polype 99.7 4.6E-16 1.6E-20 136.8 14.0 168 14-202 12-217 (439)
145 3lvq_E ARF-GAP with SH3 domain 99.7 1.3E-16 4.5E-21 142.9 10.7 164 17-211 320-485 (497)
146 2g3y_A GTP-binding protein GEM 99.7 4.2E-15 1.4E-19 118.1 17.5 164 18-210 36-203 (211)
147 1pui_A ENGB, probable GTP-bind 99.7 2.9E-15 9.8E-20 118.8 16.6 175 15-210 22-199 (210)
148 3tr5_A RF-3, peptide chain rel 99.7 1.3E-16 4.6E-21 142.8 9.4 118 18-152 12-149 (528)
149 2qtf_A Protein HFLX, GTP-bindi 99.7 5.1E-15 1.8E-19 126.8 17.6 172 20-211 180-355 (364)
150 2ged_A SR-beta, signal recogni 99.6 7.3E-16 2.5E-20 120.6 10.8 129 17-162 46-179 (193)
151 2c78_A Elongation factor TU-A; 99.6 7.5E-16 2.6E-20 134.4 11.2 165 16-209 8-211 (405)
152 2qag_A Septin-2, protein NEDD5 99.6 2.8E-15 9.6E-20 128.6 14.0 171 19-208 37-235 (361)
153 1d2e_A Elongation factor TU (E 99.6 4.3E-15 1.5E-19 129.1 15.3 163 19-210 3-195 (397)
154 3p26_A Elongation factor 1 alp 99.6 1.5E-15 5E-20 135.3 12.3 156 18-198 32-226 (483)
155 2elf_A Protein translation elo 99.6 1.1E-15 3.6E-20 131.4 11.0 150 21-210 23-180 (370)
156 3th5_A RAS-related C3 botulinu 99.4 1.9E-17 6.5E-22 131.0 0.0 166 17-207 28-202 (204)
157 1zun_B Sulfate adenylate trans 99.6 2.4E-15 8.1E-20 132.3 13.4 158 17-199 22-213 (434)
158 3izy_P Translation initiation 99.6 1.2E-17 4.2E-22 149.0 -1.3 161 19-209 4-167 (537)
159 2rdo_7 EF-G, elongation factor 99.6 2.7E-14 9.2E-19 132.2 19.0 218 16-264 7-253 (704)
160 2wkq_A NPH1-1, RAS-related C3 99.6 4.7E-15 1.6E-19 125.8 12.9 166 18-209 154-329 (332)
161 3izq_1 HBS1P, elongation facto 99.6 5E-15 1.7E-19 134.9 13.1 159 17-200 165-362 (611)
162 3vqt_A RF-3, peptide chain rel 99.6 7.7E-15 2.6E-19 132.1 13.6 118 18-152 30-167 (548)
163 2cjw_A GTP-binding protein GEM 99.6 1E-14 3.5E-19 114.2 12.5 163 18-209 5-171 (192)
164 1nrj_B SR-beta, signal recogni 99.6 9.7E-15 3.3E-19 116.5 12.5 122 17-152 10-135 (218)
165 1jny_A EF-1-alpha, elongation 99.6 1.2E-14 3.9E-19 127.9 13.3 154 18-198 5-201 (435)
166 2f9l_A RAB11B, member RAS onco 99.6 1.1E-14 3.7E-19 114.6 11.7 161 19-210 5-168 (199)
167 2xex_A Elongation factor G; GT 99.6 3E-15 1E-19 138.4 9.5 128 16-163 7-150 (693)
168 2qag_C Septin-7; cell cycle, c 99.6 3.2E-14 1.1E-18 123.6 15.3 171 18-207 30-224 (418)
169 3cb4_D GTP-binding protein LEP 99.6 1.6E-14 5.6E-19 130.7 13.7 164 18-211 3-183 (599)
170 1g7s_A Translation initiation 99.6 1.2E-14 4.2E-19 131.6 12.4 115 19-151 5-136 (594)
171 2ywe_A GTP-binding protein LEP 99.6 1.9E-14 6.5E-19 130.1 13.2 164 18-211 5-185 (600)
172 1dar_A EF-G, elongation factor 99.6 8.6E-15 3E-19 135.3 11.2 122 14-152 7-144 (691)
173 2qpt_A EH domain-containing pr 99.6 6.1E-15 2.1E-19 132.9 9.3 137 17-162 63-241 (550)
174 3avx_A Elongation factor TS, e 99.6 8.7E-14 3E-18 132.1 16.8 164 17-209 294-485 (1289)
175 1wxq_A GTP-binding protein; st 99.6 3.1E-15 1.1E-19 129.5 6.4 90 20-115 1-113 (397)
176 3c5h_A Glucocorticoid receptor 99.5 2E-14 6.7E-19 117.6 10.3 87 103-208 162-253 (255)
177 3dpu_A RAB family protein; roc 99.5 1.9E-14 6.4E-19 129.9 11.1 164 17-211 39-209 (535)
178 1zo1_I IF2, translation initia 99.5 2.6E-16 8.7E-21 139.4 -1.2 161 18-206 3-163 (501)
179 1f60_A Elongation factor EEF1A 99.5 3.8E-14 1.3E-18 125.3 11.8 139 18-177 6-180 (458)
180 2p67_A LAO/AO transport system 99.5 2E-13 6.7E-18 116.3 15.8 111 66-209 146-260 (341)
181 4a9a_A Ribosome-interacting GT 99.5 2.9E-14 1E-18 121.8 10.5 124 18-150 71-195 (376)
182 1oix_A RAS-related protein RAB 99.5 6.8E-14 2.3E-18 109.4 11.4 160 18-208 28-190 (191)
183 1udx_A The GTP-binding protein 99.5 3.1E-13 1.1E-17 117.3 14.7 168 20-212 158-327 (416)
184 2qnr_A Septin-2, protein NEDD5 99.5 3.9E-13 1.3E-17 112.4 14.5 172 18-209 17-213 (301)
185 3mca_A HBS1, elongation factor 99.5 8.9E-16 3.1E-20 139.4 -2.4 168 17-209 175-396 (592)
186 2h5e_A Peptide chain release f 99.5 2.2E-13 7.6E-18 122.1 12.8 118 18-152 12-149 (529)
187 1r5b_A Eukaryotic peptide chai 99.5 1.3E-13 4.5E-18 122.1 10.2 159 17-200 41-242 (467)
188 3r7w_B Gtpase2, GTP-binding pr 99.5 7.7E-13 2.7E-17 110.5 14.2 119 21-152 1-121 (331)
189 3p32_A Probable GTPase RV1496/ 99.5 4.6E-13 1.6E-17 114.6 13.0 108 67-210 170-284 (355)
190 3sop_A Neuronal-specific septi 99.5 1.5E-13 5.2E-18 113.0 9.4 150 20-182 3-178 (270)
191 2qag_B Septin-6, protein NEDD5 99.5 4.4E-13 1.5E-17 116.0 12.6 133 21-163 44-200 (427)
192 3j25_A Tetracycline resistance 99.5 4E-14 1.4E-18 129.8 6.2 116 19-152 2-134 (638)
193 2dy1_A Elongation factor G; tr 99.5 1E-12 3.4E-17 121.2 15.5 117 17-150 7-139 (665)
194 4fn5_A EF-G 1, elongation fact 99.4 1.3E-13 4.4E-18 128.1 8.5 130 15-163 9-160 (709)
195 2www_A Methylmalonic aciduria 99.4 5E-12 1.7E-16 107.8 16.2 108 67-210 165-279 (349)
196 1jal_A YCHF protein; nucleotid 99.3 6.9E-12 2.4E-16 106.6 10.8 88 20-114 3-107 (363)
197 1n0u_A EF-2, elongation factor 99.3 1.1E-11 3.8E-16 116.9 11.0 117 18-150 18-163 (842)
198 2dby_A GTP-binding protein; GD 99.3 2.2E-11 7.4E-16 104.2 11.7 89 20-114 2-110 (368)
199 3szr_A Interferon-induced GTP- 99.3 4.5E-11 1.6E-15 109.1 13.3 128 21-152 47-229 (608)
200 1yrb_A ATP(GTP)binding protein 99.3 7.1E-12 2.4E-16 102.7 7.0 182 10-210 5-257 (262)
201 2qm8_A GTPase/ATPase; G protei 99.2 4.8E-11 1.6E-15 101.2 10.3 107 67-209 146-260 (337)
202 3h2y_A GTPase family protein; 99.2 8.9E-13 3E-17 113.2 -0.4 132 19-162 160-296 (368)
203 3ec1_A YQEH GTPase; atnos1, at 99.2 4.6E-13 1.6E-17 115.0 -4.3 123 19-152 162-289 (369)
204 1tq4_A IIGP1, interferon-induc 99.2 3.8E-10 1.3E-14 97.7 13.6 169 19-210 69-253 (413)
205 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.8E-10 6.2E-15 99.1 9.1 94 15-114 16-126 (392)
206 2wsm_A Hydrogenase expression/ 99.1 1.6E-10 5.5E-15 92.0 7.2 155 18-210 29-214 (221)
207 2ohf_A Protein OLA1, GTP-bindi 99.1 1.5E-10 5.2E-15 99.3 7.3 91 17-114 20-127 (396)
208 1f5n_A Interferon-induced guan 99.1 3.9E-10 1.3E-14 101.6 10.1 107 18-130 37-147 (592)
209 2j37_W Signal recognition part 99.1 1.7E-09 5.9E-14 95.9 13.1 123 17-152 99-255 (504)
210 1puj_A YLQF, conserved hypothe 99.0 9.9E-10 3.4E-14 90.8 8.2 66 18-88 119-184 (282)
211 1zcb_A G alpha I/13; GTP-bindi 98.9 6.1E-08 2.1E-12 82.7 16.1 73 66-150 198-281 (362)
212 3dm5_A SRP54, signal recogniti 98.9 1.3E-08 4.3E-13 88.6 11.0 123 18-152 99-254 (443)
213 1cip_A Protein (guanine nucleo 98.9 4E-08 1.4E-12 83.5 13.8 129 66-210 190-344 (353)
214 4fid_A G protein alpha subunit 98.8 5.8E-08 2E-12 81.8 12.6 74 66-151 158-242 (340)
215 3cnl_A YLQF, putative uncharac 98.8 4.8E-09 1.6E-13 85.7 5.2 60 20-84 100-159 (262)
216 2hf9_A Probable hydrogenase ni 98.8 1.3E-08 4.4E-13 81.2 7.0 25 18-42 37-61 (226)
217 3ohm_A Guanine nucleotide-bind 98.8 3.5E-07 1.2E-11 76.7 15.9 129 66-210 164-318 (327)
218 3kl4_A SRP54, signal recogniti 98.7 7.8E-08 2.7E-12 83.7 10.3 125 18-152 96-253 (433)
219 2v3c_C SRP54, signal recogniti 98.6 5.3E-08 1.8E-12 85.0 7.5 122 19-152 99-253 (432)
220 2xtz_A Guanine nucleotide-bind 98.6 2.7E-07 9.2E-12 78.4 11.1 71 68-150 182-263 (354)
221 1rj9_A FTSY, signal recognitio 98.6 4.2E-07 1.4E-11 75.7 11.7 127 18-152 101-262 (304)
222 2yhs_A FTSY, cell division pro 98.6 3.3E-07 1.1E-11 80.6 10.8 126 17-152 291-453 (503)
223 3e70_C DPA, signal recognition 98.5 1.6E-07 5.3E-12 79.1 7.3 124 17-152 127-283 (328)
224 3q5d_A Atlastin-1; G protein, 98.5 4.7E-07 1.6E-11 79.0 10.4 25 18-42 66-90 (447)
225 3b9q_A Chloroplast SRP recepto 98.4 2.7E-06 9.1E-11 70.8 11.8 126 17-152 98-261 (302)
226 1t9h_A YLOQ, probable GTPase E 98.4 8.3E-08 2.8E-12 79.9 2.6 60 18-82 172-237 (307)
227 2og2_A Putative signal recogni 98.4 2.6E-06 8.9E-11 72.4 11.8 129 17-152 155-318 (359)
228 2xxa_A Signal recognition part 98.3 7.2E-06 2.5E-10 71.6 13.2 123 17-152 98-255 (433)
229 1vma_A Cell division protein F 98.3 2.3E-06 7.8E-11 71.3 9.0 25 17-41 102-126 (306)
230 2px0_A Flagellar biosynthesis 98.3 5.4E-07 1.9E-11 74.8 4.9 123 18-152 104-254 (296)
231 1j8m_F SRP54, signal recogniti 98.3 4.4E-06 1.5E-10 69.3 10.3 124 19-152 98-254 (297)
232 2yv5_A YJEQ protein; hydrolase 98.2 2E-06 6.7E-11 71.7 7.2 59 19-81 165-228 (302)
233 2rcn_A Probable GTPase ENGC; Y 98.2 1.4E-06 4.8E-11 73.9 5.0 30 19-48 215-245 (358)
234 1u0l_A Probable GTPase ENGC; p 98.2 1.7E-06 6E-11 72.0 5.1 60 19-82 169-234 (301)
235 4ido_A Atlastin-1; GTPase, GTP 98.1 1.8E-05 6E-10 68.9 10.9 107 17-130 65-195 (457)
236 1zu4_A FTSY; GTPase, signal re 98.1 2.1E-05 7E-10 66.0 11.0 25 17-41 103-127 (320)
237 2ffh_A Protein (FFH); SRP54, s 98.1 6.8E-06 2.3E-10 71.4 7.8 123 18-152 97-252 (425)
238 2pze_A Cystic fibrosis transme 98.0 1.1E-05 3.9E-10 64.3 6.3 31 18-48 33-63 (229)
239 3tif_A Uncharacterized ABC tra 97.9 6E-06 2E-10 66.2 4.0 31 18-48 30-60 (235)
240 1ls1_A Signal recognition part 97.9 2.7E-05 9.3E-10 64.5 7.6 123 18-152 97-252 (295)
241 2cbz_A Multidrug resistance-as 97.9 1.4E-05 5E-10 64.0 5.7 31 18-48 30-60 (237)
242 2pcj_A ABC transporter, lipopr 97.9 7.2E-06 2.5E-10 65.2 3.7 31 18-48 29-59 (224)
243 1mv5_A LMRA, multidrug resista 97.9 1.1E-05 3.8E-10 64.9 4.6 32 17-48 26-57 (243)
244 1b0u_A Histidine permease; ABC 97.9 9.6E-06 3.3E-10 66.1 4.1 31 18-48 31-61 (262)
245 2olj_A Amino acid ABC transpor 97.9 1E-05 3.5E-10 65.9 4.1 31 18-48 49-79 (263)
246 4g1u_C Hemin import ATP-bindin 97.8 1.1E-05 3.8E-10 65.8 4.3 31 18-48 36-66 (266)
247 1vpl_A ABC transporter, ATP-bi 97.8 1.1E-05 3.7E-10 65.5 4.1 31 18-48 40-70 (256)
248 1sgw_A Putative ABC transporte 97.8 9.1E-06 3.1E-10 64.1 3.5 31 18-48 34-64 (214)
249 1g6h_A High-affinity branched- 97.8 1E-05 3.5E-10 65.7 3.9 31 18-48 32-62 (257)
250 1azs_C GS-alpha; complex (lyas 97.8 8.9E-05 3.1E-09 63.8 9.9 73 66-150 214-297 (402)
251 3gfo_A Cobalt import ATP-bindi 97.8 1E-05 3.6E-10 66.3 3.9 31 18-48 33-63 (275)
252 1ji0_A ABC transporter; ATP bi 97.8 1.2E-05 4E-10 64.7 3.9 31 18-48 31-61 (240)
253 2onk_A Molybdate/tungstate ABC 97.8 1.2E-05 4.3E-10 64.5 4.0 29 20-48 25-53 (240)
254 2ff7_A Alpha-hemolysin translo 97.8 1.2E-05 4.2E-10 64.9 3.9 31 18-48 34-64 (247)
255 2bbs_A Cystic fibrosis transme 97.8 2.6E-05 9E-10 64.4 5.7 31 18-48 63-93 (290)
256 2ixe_A Antigen peptide transpo 97.8 1.4E-05 4.8E-10 65.4 4.0 32 17-48 43-74 (271)
257 2yz2_A Putative ABC transporte 97.8 1.4E-05 4.8E-10 65.2 4.0 31 18-48 32-62 (266)
258 2ihy_A ABC transporter, ATP-bi 97.8 1.4E-05 4.7E-10 65.7 3.9 31 18-48 46-76 (279)
259 2nq2_C Hypothetical ABC transp 97.8 1.5E-05 5.2E-10 64.5 3.9 31 18-48 30-60 (253)
260 1htw_A HI0065; nucleotide-bind 97.8 1.7E-05 6E-10 59.3 3.8 30 18-48 32-61 (158)
261 1ye8_A Protein THEP1, hypothet 97.8 1.2E-05 3.9E-10 61.6 2.7 23 21-43 2-24 (178)
262 1lvg_A Guanylate kinase, GMP k 97.7 1E-05 3.4E-10 63.1 2.3 24 19-42 4-27 (198)
263 1znw_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 62.6 3.0 27 17-43 18-44 (207)
264 2qi9_C Vitamin B12 import ATP- 97.7 2E-05 6.8E-10 63.6 3.9 29 18-46 25-53 (249)
265 3nh6_A ATP-binding cassette SU 97.7 1.7E-05 5.7E-10 66.0 3.1 32 17-48 78-109 (306)
266 1kgd_A CASK, peripheral plasma 97.7 1.9E-05 6.6E-10 60.4 3.0 25 19-43 5-29 (180)
267 2d2e_A SUFC protein; ABC-ATPas 97.7 2.3E-05 7.8E-10 63.4 3.4 25 18-42 28-52 (250)
268 3fvq_A Fe(3+) IONS import ATP- 97.7 2.8E-05 9.6E-10 65.9 3.9 31 18-48 29-59 (359)
269 3tui_C Methionine import ATP-b 97.7 3.1E-05 1.1E-09 65.8 4.1 32 17-48 52-83 (366)
270 2pjz_A Hypothetical protein ST 97.6 3E-05 1E-09 63.1 3.8 29 19-48 30-58 (263)
271 3tr0_A Guanylate kinase, GMP k 97.6 2.4E-05 8.3E-10 60.9 3.2 24 19-42 7-30 (205)
272 1u0l_A Probable GTPase ENGC; p 97.6 5.6E-05 1.9E-09 62.8 5.5 102 69-205 63-168 (301)
273 1s96_A Guanylate kinase, GMP k 97.6 2.4E-05 8.1E-10 61.9 3.0 28 17-44 14-41 (219)
274 1z6g_A Guanylate kinase; struc 97.6 2E-05 6.9E-10 62.3 2.5 26 18-43 22-47 (218)
275 2ghi_A Transport protein; mult 97.6 3.4E-05 1.2E-09 62.7 3.9 27 18-44 45-71 (260)
276 2zu0_C Probable ATP-dependent 97.6 3.5E-05 1.2E-09 62.9 3.8 25 18-42 45-69 (267)
277 3a00_A Guanylate kinase, GMP k 97.6 2.1E-05 7.1E-10 60.6 2.3 25 20-44 2-26 (186)
278 3rlf_A Maltose/maltodextrin im 97.6 3.8E-05 1.3E-09 65.6 4.1 31 18-48 28-58 (381)
279 2yyz_A Sugar ABC transporter, 97.6 3.9E-05 1.3E-09 65.2 4.1 31 18-48 28-58 (359)
280 2it1_A 362AA long hypothetical 97.6 3.9E-05 1.3E-09 65.2 4.1 31 18-48 28-58 (362)
281 1zp6_A Hypothetical protein AT 97.6 4.2E-05 1.4E-09 58.9 3.9 25 18-42 8-32 (191)
282 1z47_A CYSA, putative ABC-tran 97.6 4E-05 1.4E-09 65.0 3.9 31 18-48 40-70 (355)
283 3c8u_A Fructokinase; YP_612366 97.6 3E-05 1E-09 60.8 2.8 27 17-43 20-46 (208)
284 1v43_A Sugar-binding transport 97.6 4.6E-05 1.6E-09 65.1 4.1 31 18-48 36-66 (372)
285 3b85_A Phosphate starvation-in 97.6 1.2E-05 4.2E-10 63.0 0.6 31 19-50 22-52 (208)
286 4dzz_A Plasmid partitioning pr 97.6 0.00099 3.4E-08 51.6 11.6 69 68-150 75-143 (206)
287 4e22_A Cytidylate kinase; P-lo 97.6 3.4E-05 1.2E-09 62.4 3.2 31 18-48 26-59 (252)
288 3ney_A 55 kDa erythrocyte memb 97.6 3.7E-05 1.3E-09 59.6 3.3 26 18-43 18-43 (197)
289 3d31_A Sulfate/molybdate ABC t 97.6 3.6E-05 1.2E-09 65.2 3.2 31 18-48 25-55 (348)
290 1g29_1 MALK, maltose transport 97.5 5.1E-05 1.7E-09 64.9 3.9 31 18-48 28-58 (372)
291 3asz_A Uridine kinase; cytidin 97.5 4E-05 1.4E-09 60.1 2.9 26 17-42 4-29 (211)
292 4gp7_A Metallophosphoesterase; 97.5 5.9E-05 2E-09 57.2 3.6 24 18-41 8-31 (171)
293 1oxx_K GLCV, glucose, ABC tran 97.5 3.4E-05 1.2E-09 65.5 2.5 31 18-48 30-60 (353)
294 4f4c_A Multidrug resistance pr 97.5 0.00024 8.1E-09 70.5 8.7 31 18-48 1104-1134(1321)
295 2eyu_A Twitching motility prot 97.5 5.2E-05 1.8E-09 61.6 3.2 28 17-44 23-50 (261)
296 4f4c_A Multidrug resistance pr 97.5 0.00065 2.2E-08 67.4 11.4 31 18-48 443-473 (1321)
297 3ozx_A RNAse L inhibitor; ATP 97.5 0.00011 3.8E-09 65.9 5.3 32 18-49 24-55 (538)
298 2v9p_A Replication protein E1; 97.5 5.4E-05 1.8E-09 62.8 3.0 26 17-42 124-149 (305)
299 1knq_A Gluconate kinase; ALFA/ 97.5 7.8E-05 2.7E-09 56.5 3.6 25 17-41 6-30 (175)
300 3tau_A Guanylate kinase, GMP k 97.4 6.8E-05 2.3E-09 58.8 3.3 26 18-43 7-32 (208)
301 2jeo_A Uridine-cytidine kinase 97.4 6.6E-05 2.3E-09 60.4 3.2 35 6-42 14-48 (245)
302 2bbw_A Adenylate kinase 4, AK4 97.4 7.7E-05 2.6E-09 60.0 3.5 29 19-47 27-58 (246)
303 1yqt_A RNAse L inhibitor; ATP- 97.4 0.0001 3.4E-09 66.3 4.5 33 17-49 45-77 (538)
304 3j16_B RLI1P; ribosome recycli 97.4 0.00011 3.9E-09 66.8 4.5 33 17-49 101-133 (608)
305 3aez_A Pantothenate kinase; tr 97.4 8.2E-05 2.8E-09 62.1 3.3 28 16-43 87-114 (312)
306 4eun_A Thermoresistant glucoki 97.4 8.4E-05 2.9E-09 57.8 3.0 25 17-41 27-51 (200)
307 3lnc_A Guanylate kinase, GMP k 97.4 6.3E-05 2.2E-09 59.9 2.3 26 18-43 26-52 (231)
308 2gza_A Type IV secretion syste 97.4 0.0001 3.5E-09 62.9 3.7 30 18-47 174-203 (361)
309 2i3b_A HCR-ntpase, human cance 97.4 7.1E-05 2.4E-09 57.7 2.4 25 20-44 2-26 (189)
310 2j41_A Guanylate kinase; GMP, 97.4 9.9E-05 3.4E-09 57.4 3.3 25 19-43 6-30 (207)
311 4b4t_L 26S protease subunit RP 97.4 0.0016 5.4E-08 56.7 11.0 23 19-41 215-237 (437)
312 3bk7_A ABC transporter ATP-bin 97.3 0.00014 4.9E-09 66.2 4.4 33 17-49 115-147 (607)
313 1puj_A YLQF, conserved hypothe 97.3 0.00053 1.8E-08 56.3 7.5 91 95-209 15-105 (282)
314 3h2y_A GTPase family protein; 97.3 0.00059 2E-08 58.3 7.8 100 91-209 57-159 (368)
315 2pt7_A CAG-ALFA; ATPase, prote 97.3 9.9E-05 3.4E-09 62.1 2.9 29 19-47 171-199 (330)
316 3b5x_A Lipid A export ATP-bind 97.3 0.00017 5.7E-09 65.6 4.3 32 17-48 367-398 (582)
317 3gd7_A Fusion complex of cysti 97.3 0.00014 4.8E-09 62.5 3.4 27 18-44 46-72 (390)
318 3b60_A Lipid A export ATP-bind 97.3 0.00016 5.3E-09 65.8 3.9 31 18-48 368-398 (582)
319 2bdt_A BH3686; alpha-beta prot 97.2 0.00012 4.2E-09 56.2 2.6 22 20-41 3-24 (189)
320 3ozx_A RNAse L inhibitor; ATP 97.2 0.00021 7.2E-09 64.1 4.3 31 18-48 293-323 (538)
321 1sq5_A Pantothenate kinase; P- 97.2 0.00017 6E-09 60.0 3.4 26 17-42 78-103 (308)
322 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00023 8E-09 63.9 4.4 32 18-49 311-342 (538)
323 3jvv_A Twitching mobility prot 97.2 0.00016 5.5E-09 61.4 3.2 26 18-43 122-147 (356)
324 1kag_A SKI, shikimate kinase I 97.2 0.00014 4.7E-09 55.0 2.4 23 20-42 5-27 (173)
325 4b4t_I 26S protease regulatory 97.2 0.0029 9.8E-08 54.7 10.7 23 19-41 216-238 (437)
326 4b4t_J 26S protease regulatory 97.2 0.0025 8.5E-08 54.7 10.3 22 20-41 183-204 (405)
327 3bk7_A ABC transporter ATP-bin 97.2 0.00025 8.5E-09 64.5 4.4 32 18-49 381-412 (607)
328 3uie_A Adenylyl-sulfate kinase 97.2 0.0002 6.8E-09 55.6 3.2 25 18-42 24-48 (200)
329 4a74_A DNA repair and recombin 97.2 0.00018 6E-09 57.0 2.8 26 18-43 24-49 (231)
330 4a82_A Cystic fibrosis transme 97.2 0.00015 5E-09 65.9 2.7 32 17-48 365-396 (578)
331 2yl4_A ATP-binding cassette SU 97.2 0.00016 5.4E-09 65.9 2.8 31 18-48 369-399 (595)
332 4b4t_K 26S protease regulatory 97.2 0.0019 6.3E-08 56.1 9.4 23 19-41 206-228 (428)
333 2vp4_A Deoxynucleoside kinase; 97.2 0.0002 6.9E-09 56.9 3.2 28 15-42 16-43 (230)
334 3qf4_B Uncharacterized ABC tra 97.2 0.00018 6E-09 65.6 3.0 32 17-48 379-410 (598)
335 2ehv_A Hypothetical protein PH 97.2 0.00024 8.2E-09 56.9 3.6 24 17-40 28-51 (251)
336 2oap_1 GSPE-2, type II secreti 97.2 0.00019 6.5E-09 63.9 3.2 26 19-44 260-285 (511)
337 2ewv_A Twitching motility prot 97.1 0.00021 7.1E-09 61.2 3.1 27 17-43 134-160 (372)
338 3tqc_A Pantothenate kinase; bi 97.1 0.00027 9.3E-09 59.0 3.6 26 17-42 90-115 (321)
339 2qor_A Guanylate kinase; phosp 97.1 0.00025 8.5E-09 55.2 3.2 25 18-42 11-35 (204)
340 1p9r_A General secretion pathw 97.1 0.00018 6.2E-09 62.4 2.5 27 18-44 166-192 (418)
341 2f1r_A Molybdopterin-guanine d 97.1 0.00011 3.6E-09 55.8 0.9 24 20-43 3-26 (171)
342 3qf4_A ABC transporter, ATP-bi 97.1 0.00022 7.4E-09 64.9 3.1 32 17-48 367-398 (587)
343 2npi_A Protein CLP1; CLP1-PCF1 97.1 0.00014 4.7E-09 64.0 1.7 31 18-48 137-167 (460)
344 3j16_B RLI1P; ribosome recycli 97.1 0.00035 1.2E-08 63.5 4.4 30 20-49 379-408 (608)
345 1lw7_A Transcriptional regulat 97.1 0.00018 6.3E-09 61.4 2.4 27 19-45 170-196 (365)
346 3ec2_A DNA replication protein 97.1 0.00021 7.3E-09 54.4 2.3 25 19-43 38-62 (180)
347 3euj_A Chromosome partition pr 97.1 0.00025 8.6E-09 62.5 3.0 29 20-48 30-58 (483)
348 1y63_A LMAJ004144AAA protein; 97.1 0.00044 1.5E-08 52.9 4.0 25 17-41 8-32 (184)
349 1rz3_A Hypothetical protein rb 97.0 0.00034 1.2E-08 54.4 3.3 25 17-41 20-44 (201)
350 1cke_A CK, MSSA, protein (cyti 97.0 0.00031 1E-08 55.5 3.0 23 20-42 6-28 (227)
351 1jjv_A Dephospho-COA kinase; P 97.0 0.00038 1.3E-08 54.2 3.5 22 20-41 3-24 (206)
352 2qt1_A Nicotinamide riboside k 97.0 0.00045 1.5E-08 53.8 3.9 25 18-42 20-44 (207)
353 1ex7_A Guanylate kinase; subst 97.0 0.00036 1.2E-08 53.6 3.1 22 21-42 3-24 (186)
354 2yv5_A YJEQ protein; hydrolase 97.0 0.0024 8.3E-08 52.9 8.2 48 100-152 76-125 (302)
355 1ukz_A Uridylate kinase; trans 97.0 0.00063 2.2E-08 52.7 4.4 29 12-40 8-36 (203)
356 2iw3_A Elongation factor 3A; a 97.0 0.00027 9.4E-09 67.2 2.6 31 18-48 698-728 (986)
357 3thx_A DNA mismatch repair pro 97.0 0.0068 2.3E-07 57.8 12.1 22 18-39 661-682 (934)
358 2if2_A Dephospho-COA kinase; a 97.0 0.00032 1.1E-08 54.5 2.6 22 20-41 2-23 (204)
359 2kjq_A DNAA-related protein; s 97.0 0.00024 8.2E-09 52.5 1.6 26 18-43 35-60 (149)
360 2obl_A ESCN; ATPase, hydrolase 97.0 0.00031 1.1E-08 59.5 2.4 29 17-45 69-97 (347)
361 4b4t_M 26S protease regulatory 97.0 0.0018 6.2E-08 56.3 7.3 23 19-41 215-237 (434)
362 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0053 1.8E-07 49.3 9.7 23 19-41 39-61 (262)
363 3ec1_A YQEH GTPase; atnos1, at 96.9 0.00068 2.3E-08 57.9 4.4 99 92-209 60-161 (369)
364 3vaa_A Shikimate kinase, SK; s 96.9 0.00057 2E-08 52.9 3.6 24 18-41 24-47 (199)
365 1odf_A YGR205W, hypothetical 3 96.9 0.00053 1.8E-08 56.6 3.5 26 17-42 29-54 (290)
366 3lw7_A Adenylate kinase relate 96.9 0.00053 1.8E-08 51.5 3.2 20 20-39 2-21 (179)
367 4b4t_H 26S protease regulatory 96.9 0.0058 2E-07 53.3 10.0 24 18-41 242-265 (467)
368 1np6_A Molybdopterin-guanine d 96.9 0.00058 2E-08 51.8 3.3 23 20-42 7-29 (174)
369 1nij_A Hypothetical protein YJ 96.9 0.00039 1.3E-08 58.1 2.6 25 19-43 4-28 (318)
370 2wwf_A Thymidilate kinase, put 96.9 0.0008 2.7E-08 52.4 4.0 25 17-41 8-32 (212)
371 1ly1_A Polynucleotide kinase; 96.8 0.00075 2.6E-08 51.1 3.5 22 20-41 3-24 (181)
372 3kb2_A SPBC2 prophage-derived 96.8 0.00067 2.3E-08 50.9 3.2 22 20-41 2-23 (173)
373 3t61_A Gluconokinase; PSI-biol 96.8 0.00071 2.4E-08 52.4 3.4 23 19-41 18-40 (202)
374 3kta_A Chromosome segregation 96.8 0.00066 2.2E-08 51.7 3.1 21 21-41 28-48 (182)
375 3cwq_A Para family chromosome 96.8 0.0095 3.2E-07 46.4 9.7 66 68-151 67-134 (209)
376 3cm0_A Adenylate kinase; ATP-b 96.8 0.00079 2.7E-08 51.3 3.4 22 19-40 4-25 (186)
377 2dpy_A FLII, flagellum-specifi 96.8 0.00052 1.8E-08 60.0 2.6 29 17-45 155-183 (438)
378 2x8a_A Nuclear valosin-contain 96.8 0.00054 1.8E-08 56.0 2.4 21 22-42 47-67 (274)
379 3l82_B F-box only protein 4; T 96.8 0.00097 3.3E-08 51.8 3.6 105 92-209 114-222 (227)
380 1uf9_A TT1252 protein; P-loop, 96.7 0.001 3.4E-08 51.5 3.7 26 17-42 6-31 (203)
381 2yvu_A Probable adenylyl-sulfa 96.7 0.0013 4.4E-08 50.2 4.2 24 18-41 12-35 (186)
382 1kht_A Adenylate kinase; phosp 96.7 0.00093 3.2E-08 51.0 3.4 21 20-40 4-24 (192)
383 1qhx_A CPT, protein (chloramph 96.7 0.001 3.5E-08 50.3 3.6 22 20-41 4-25 (178)
384 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.7E-08 50.0 3.4 23 19-41 4-26 (169)
385 1gvn_B Zeta; postsegregational 96.7 0.0011 3.8E-08 54.5 3.8 26 16-41 30-55 (287)
386 1qhl_A Protein (cell division 96.7 9E-05 3.1E-09 58.8 -2.7 28 21-48 29-56 (227)
387 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.8E-08 50.7 3.6 22 19-40 5-26 (193)
388 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 50.5 3.4 22 19-40 5-26 (185)
389 3h4m_A Proteasome-activating n 96.7 0.0079 2.7E-07 49.0 8.8 23 19-41 51-73 (285)
390 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.0013 4.6E-08 48.4 3.7 21 20-40 24-44 (149)
391 3g5u_A MCG1178, multidrug resi 96.7 0.00095 3.2E-08 66.1 3.7 31 18-48 415-445 (1284)
392 2cdn_A Adenylate kinase; phosp 96.6 0.0014 4.9E-08 50.6 4.0 23 18-40 19-41 (201)
393 1aky_A Adenylate kinase; ATP:A 96.6 0.0012 4.1E-08 51.9 3.6 23 18-40 3-25 (220)
394 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.00093 3.2E-08 52.7 2.9 24 18-41 22-45 (235)
395 1ixz_A ATP-dependent metallopr 96.6 0.00081 2.8E-08 54.1 2.5 21 22-42 52-72 (254)
396 2pez_A Bifunctional 3'-phospho 96.6 0.0014 4.8E-08 49.7 3.7 24 18-41 4-27 (179)
397 1cr0_A DNA primase/helicase; R 96.6 0.001 3.4E-08 55.0 2.9 27 17-43 33-59 (296)
398 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.3E-08 50.9 3.3 21 21-41 2-22 (205)
399 1tev_A UMP-CMP kinase; ploop, 96.6 0.0014 4.9E-08 50.1 3.5 22 19-40 3-24 (196)
400 1nks_A Adenylate kinase; therm 96.6 0.0013 4.4E-08 50.3 3.2 22 20-41 2-23 (194)
401 2v54_A DTMP kinase, thymidylat 96.6 0.0016 5.4E-08 50.4 3.7 23 19-41 4-26 (204)
402 2plr_A DTMP kinase, probable t 96.6 0.0016 5.3E-08 50.7 3.7 23 19-41 4-26 (213)
403 3qf7_A RAD50; ABC-ATPase, ATPa 96.6 0.0011 3.9E-08 56.5 3.1 20 21-40 25-44 (365)
404 3n70_A Transport activator; si 96.5 0.0073 2.5E-07 44.0 7.1 22 20-41 25-46 (145)
405 3iij_A Coilin-interacting nucl 96.5 0.0017 5.8E-08 49.2 3.7 23 18-40 10-32 (180)
406 1svm_A Large T antigen; AAA+ f 96.5 0.0013 4.3E-08 56.3 3.1 24 18-41 168-191 (377)
407 2grj_A Dephospho-COA kinase; T 96.5 0.0017 5.7E-08 50.1 3.5 25 16-40 9-33 (192)
408 2c95_A Adenylate kinase 1; tra 96.5 0.0017 5.7E-08 49.8 3.5 22 19-40 9-30 (196)
409 3a8t_A Adenylate isopentenyltr 96.5 0.0024 8.1E-08 53.5 4.6 25 19-43 40-64 (339)
410 3fb4_A Adenylate kinase; psych 96.5 0.0015 5.1E-08 51.1 3.3 20 21-40 2-21 (216)
411 1ak2_A Adenylate kinase isoenz 96.5 0.0018 6.1E-08 51.5 3.7 23 18-40 15-37 (233)
412 3g5u_A MCG1178, multidrug resi 96.5 0.0016 5.5E-08 64.4 3.9 32 17-48 1057-1088(1284)
413 3thx_B DNA mismatch repair pro 96.5 0.011 3.7E-07 56.3 9.3 24 18-41 672-695 (918)
414 1in4_A RUVB, holliday junction 96.5 0.0011 3.8E-08 55.8 2.4 23 20-42 52-74 (334)
415 3dl0_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 50.8 3.3 20 21-40 2-21 (216)
416 1iy2_A ATP-dependent metallopr 96.5 0.0012 4.1E-08 54.0 2.5 21 22-42 76-96 (278)
417 3umf_A Adenylate kinase; rossm 96.5 0.0025 8.6E-08 50.1 4.2 25 17-41 27-51 (217)
418 2cvh_A DNA repair and recombin 96.4 0.0016 5.3E-08 51.0 3.0 24 18-41 19-42 (220)
419 3tlx_A Adenylate kinase 2; str 96.4 0.0021 7.1E-08 51.5 3.8 23 18-40 28-50 (243)
420 3cnl_A YLQF, putative uncharac 96.4 0.0012 4E-08 53.6 2.3 43 101-152 19-61 (262)
421 3nwj_A ATSK2; P loop, shikimat 96.4 0.0013 4.4E-08 52.9 2.5 23 19-41 48-70 (250)
422 1nn5_A Similar to deoxythymidy 96.4 0.002 6.7E-08 50.2 3.5 24 18-41 8-31 (215)
423 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.033 1.1E-06 46.4 11.2 23 19-41 45-67 (322)
424 2ze6_A Isopentenyl transferase 96.4 0.0019 6.5E-08 52.1 3.4 22 20-41 2-23 (253)
425 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.2E-08 50.4 3.6 23 19-41 4-26 (218)
426 2iw3_A Elongation factor 3A; a 96.4 0.0014 4.8E-08 62.5 2.9 26 18-43 460-485 (986)
427 1qf9_A UMP/CMP kinase, protein 96.4 0.0026 9E-08 48.5 4.1 22 19-40 6-27 (194)
428 1via_A Shikimate kinase; struc 96.4 0.0017 5.9E-08 49.0 2.9 21 21-41 6-26 (175)
429 2p5t_B PEZT; postsegregational 96.4 0.0018 6.2E-08 52.2 3.1 26 16-41 29-54 (253)
430 1zd8_A GTP:AMP phosphotransfer 96.4 0.002 6.8E-08 50.9 3.3 22 19-40 7-28 (227)
431 2bwj_A Adenylate kinase 5; pho 96.3 0.0022 7.5E-08 49.3 3.3 23 19-41 12-34 (199)
432 1n0w_A DNA repair protein RAD5 96.3 0.0019 6.3E-08 51.4 2.9 25 18-42 23-47 (243)
433 1zak_A Adenylate kinase; ATP:A 96.3 0.002 6.9E-08 50.7 3.1 21 20-40 6-26 (222)
434 1gtv_A TMK, thymidylate kinase 96.3 0.00095 3.2E-08 52.1 1.1 21 21-41 2-22 (214)
435 3r20_A Cytidylate kinase; stru 96.3 0.0024 8.3E-08 50.7 3.4 22 19-40 9-30 (233)
436 1uj2_A Uridine-cytidine kinase 96.3 0.0028 9.5E-08 51.0 3.6 25 17-41 20-44 (252)
437 2f6r_A COA synthase, bifunctio 96.3 0.0037 1.3E-07 51.2 4.4 23 18-40 74-96 (281)
438 4aby_A DNA repair protein RECN 96.2 0.00073 2.5E-08 58.6 0.0 20 21-40 62-81 (415)
439 1m7g_A Adenylylsulfate kinase; 96.2 0.0031 1.1E-07 49.2 3.7 24 18-41 24-47 (211)
440 2z0h_A DTMP kinase, thymidylat 96.2 0.0027 9.2E-08 48.7 3.3 21 21-41 2-22 (197)
441 2pt5_A Shikimate kinase, SK; a 96.2 0.0029 1E-07 47.2 3.3 20 21-40 2-21 (168)
442 2pbr_A DTMP kinase, thymidylat 96.2 0.0029 9.9E-08 48.4 3.3 21 21-41 2-22 (195)
443 4eaq_A DTMP kinase, thymidylat 96.2 0.0036 1.2E-07 49.7 3.8 25 17-41 24-48 (229)
444 1wb9_A DNA mismatch repair pro 96.2 0.0018 6E-08 60.8 2.3 26 17-42 605-630 (800)
445 3foz_A TRNA delta(2)-isopenten 96.2 0.0038 1.3E-07 51.6 4.0 24 18-41 9-32 (316)
446 2iyv_A Shikimate kinase, SK; t 96.2 0.0025 8.6E-08 48.4 2.8 21 20-40 3-23 (184)
447 1e6c_A Shikimate kinase; phosp 96.2 0.0027 9.2E-08 47.6 2.9 21 20-40 3-23 (173)
448 1q3t_A Cytidylate kinase; nucl 96.2 0.0035 1.2E-07 49.9 3.7 24 18-41 15-38 (236)
449 1jbk_A CLPB protein; beta barr 96.2 0.0036 1.2E-07 47.4 3.7 23 19-41 43-65 (195)
450 1e4v_A Adenylate kinase; trans 96.2 0.0028 9.7E-08 49.5 3.1 20 21-40 2-21 (214)
451 3qks_A DNA double-strand break 96.2 0.0037 1.3E-07 48.5 3.7 21 20-40 24-44 (203)
452 2vli_A Antibiotic resistance p 96.1 0.0022 7.4E-08 48.6 2.2 22 19-40 5-26 (183)
453 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0037 1.3E-07 50.6 3.7 22 20-41 5-26 (260)
454 1lv7_A FTSH; alpha/beta domain 96.1 0.003 1E-07 50.8 3.2 22 20-41 46-67 (257)
455 1nlf_A Regulatory protein REPA 96.1 0.0026 8.9E-08 52.0 2.7 24 18-41 29-52 (279)
456 2xb4_A Adenylate kinase; ATP-b 96.1 0.0035 1.2E-07 49.4 3.3 20 21-40 2-21 (223)
457 3sr0_A Adenylate kinase; phosp 96.1 0.0036 1.2E-07 48.8 3.2 21 21-41 2-22 (206)
458 3ux8_A Excinuclease ABC, A sub 96.1 0.0021 7.1E-08 59.4 2.1 23 18-40 347-369 (670)
459 3be4_A Adenylate kinase; malar 96.0 0.0036 1.2E-07 49.1 3.1 21 20-40 6-26 (217)
460 3cr8_A Sulfate adenylyltranfer 96.0 0.0022 7.6E-08 57.6 1.9 26 18-43 368-393 (552)
461 3qkt_A DNA double-strand break 96.0 0.0047 1.6E-07 52.0 3.7 21 20-40 24-44 (339)
462 2o8b_B DNA mismatch repair pro 96.0 0.028 9.6E-07 54.2 9.3 24 19-43 789-812 (1022)
463 3exa_A TRNA delta(2)-isopenten 95.9 0.0051 1.7E-07 50.9 3.7 24 19-42 3-26 (322)
464 2w58_A DNAI, primosome compone 95.9 0.0048 1.6E-07 47.6 3.4 22 20-41 55-76 (202)
465 1zuh_A Shikimate kinase; alpha 95.9 0.0049 1.7E-07 46.0 3.3 23 18-40 6-28 (168)
466 2qmh_A HPR kinase/phosphorylas 95.9 0.0053 1.8E-07 47.3 3.4 25 18-42 33-57 (205)
467 1r6b_X CLPA protein; AAA+, N-t 95.9 0.013 4.4E-07 54.9 6.8 24 18-41 206-229 (758)
468 3k9g_A PF-32 protein; ssgcid, 95.9 0.13 4.3E-06 41.4 11.9 64 68-148 144-208 (267)
469 3bos_A Putative DNA replicatio 95.9 0.005 1.7E-07 48.6 3.4 24 18-41 51-74 (242)
470 1pzn_A RAD51, DNA repair and r 95.9 0.0034 1.2E-07 53.2 2.5 26 18-43 130-155 (349)
471 1w1w_A Structural maintenance 95.9 0.0038 1.3E-07 54.4 2.9 25 19-43 26-50 (430)
472 3vfd_A Spastin; ATPase, microt 95.9 0.03 1E-06 48.0 8.5 23 19-41 148-170 (389)
473 1tue_A Replication protein E1; 95.9 0.0043 1.5E-07 48.1 2.7 22 20-41 59-80 (212)
474 1ewq_A DNA mismatch repair pro 95.9 0.0028 9.7E-08 59.1 2.0 25 19-43 576-600 (765)
475 2p65_A Hypothetical protein PF 95.8 0.0046 1.6E-07 46.6 2.7 23 19-41 43-65 (187)
476 2o5v_A DNA replication and rep 95.8 0.0061 2.1E-07 51.7 3.7 22 20-41 27-48 (359)
477 3crm_A TRNA delta(2)-isopenten 95.8 0.0067 2.3E-07 50.5 3.8 22 20-41 6-27 (323)
478 1a7j_A Phosphoribulokinase; tr 95.8 0.0028 9.7E-08 52.2 1.5 23 19-41 5-27 (290)
479 3ake_A Cytidylate kinase; CMP 95.8 0.0062 2.1E-07 47.1 3.3 21 21-41 4-24 (208)
480 1ltq_A Polynucleotide kinase; 95.7 0.0064 2.2E-07 50.1 3.5 22 20-41 3-24 (301)
481 3cf2_A TER ATPase, transitiona 95.7 0.038 1.3E-06 51.8 8.9 71 18-114 237-307 (806)
482 3cf0_A Transitional endoplasmi 95.7 0.0067 2.3E-07 50.1 3.6 23 19-41 49-71 (301)
483 3t15_A Ribulose bisphosphate c 95.7 0.0097 3.3E-07 49.0 4.5 23 19-41 36-58 (293)
484 3zvl_A Bifunctional polynucleo 95.7 0.0088 3E-07 51.9 4.4 24 18-41 257-280 (416)
485 1tf7_A KAIC; homohexamer, hexa 95.7 0.0047 1.6E-07 55.3 2.7 22 18-39 38-59 (525)
486 3gmt_A Adenylate kinase; ssgci 95.7 0.0069 2.3E-07 47.9 3.3 25 16-40 5-29 (230)
487 3d3q_A TRNA delta(2)-isopenten 95.7 0.0065 2.2E-07 51.0 3.4 22 20-41 8-29 (340)
488 4fcw_A Chaperone protein CLPB; 95.7 0.0092 3.2E-07 49.3 4.3 23 19-41 47-69 (311)
489 3ux8_A Excinuclease ABC, A sub 95.6 0.0059 2E-07 56.4 3.2 19 18-36 43-61 (670)
490 1e69_A Chromosome segregation 95.6 0.0048 1.6E-07 51.6 2.4 20 21-40 26-45 (322)
491 3b9p_A CG5977-PA, isoform A; A 95.6 0.0077 2.6E-07 49.5 3.6 23 19-41 54-76 (297)
492 3syl_A Protein CBBX; photosynt 95.6 0.0088 3E-07 49.4 3.9 24 18-41 66-89 (309)
493 3u61_B DNA polymerase accessor 95.6 0.12 4.3E-06 42.7 10.9 21 21-41 50-70 (324)
494 3eph_A TRNA isopentenyltransfe 95.5 0.0085 2.9E-07 51.4 3.4 21 20-40 3-23 (409)
495 1jr3_A DNA polymerase III subu 95.5 0.018 6.2E-07 48.7 5.5 21 21-41 40-60 (373)
496 1sxj_E Activator 1 40 kDa subu 95.4 0.005 1.7E-07 51.9 1.9 20 22-41 39-58 (354)
497 1qvr_A CLPB protein; coiled co 95.4 0.015 5.2E-07 55.2 5.2 23 20-42 192-214 (854)
498 2dr3_A UPF0273 protein PH0284; 95.4 0.0097 3.3E-07 47.2 3.4 23 18-40 22-44 (247)
499 1p5z_B DCK, deoxycytidine kina 95.4 0.0065 2.2E-07 49.1 2.3 25 17-41 22-46 (263)
500 3l2o_B F-box only protein 4; s 95.3 0.027 9.2E-07 46.0 5.7 99 95-210 202-308 (312)
No 1
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.97 E-value=1e-30 Score=213.66 Aligned_cols=205 Identities=32% Similarity=0.555 Sum_probs=158.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFVGKEIVK 95 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~~~~ 95 (277)
.+.++|+|+|.+|+|||||+|+|+|...+.......++|..+..... .+.+..+.||||||+.+..... +.....+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~-~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSR-RWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEE-EETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEE-EECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 45689999999999999999999998876655444455655555543 3788999999999998754433 334456666
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCcc-CcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
++..+.+++|++|+|+|++ +++..+...++++.+.++.... .|++|++||+|... ..+++++....+..++.+++
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 6666679999999999998 7988899999999998886533 48899999999643 46778876534466899999
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (277)
.|+.+++.|++... ++....|+.+|++.|.+++..+++.+|+++++..++..
T Consensus 174 ~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~ 225 (247)
T 3lxw_A 174 ECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQVL 225 (247)
T ss_dssp HTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHHG
T ss_pred HcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 99999999998864 44567899999999999999999999999998877654
No 2
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=211.64 Aligned_cols=207 Identities=36% Similarity=0.652 Sum_probs=144.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+....++|+|+|++|+|||||+|+|+|...+..+....+.|..+...... +.+..+.||||||+.+...+...+..++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence 34466899999999999999999999988866654444556555555443 68889999999999988777777788888
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
.++..+++++|++|+|+|++ +++..+..++.++.+.++.....|++||+||+|.... ..+++++.. ....++.+++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~ 179 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMD 179 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHH
Confidence 88888889999999999998 7878888888888887776555699999999998876 677777764 4456889999
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGATEL 227 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 227 (277)
.|+.+++.|++... ++....++.+|+..|..++..+++.+|.++++...++.
T Consensus 180 ~~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~ 231 (239)
T 3lxx_A 180 IFGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEE 231 (239)
T ss_dssp HHSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-----------
T ss_pred HcCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 99999999988764 34556899999999999999988888988887766553
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.97 E-value=2.8e-28 Score=200.95 Aligned_cols=205 Identities=30% Similarity=0.545 Sum_probs=156.3
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
++..+..+|+|+|++|||||||+|+|++...+.....+.+.|..+.... ..+.+..+.||||||+.+...........+
T Consensus 17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQ-GSWGNREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEE-EEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEE-EEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 3455679999999999999999999999886555443333444444433 347888999999999988776666666667
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe-CCCCCCcccccHHHHhcccCCchHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
...+..+++.+|++++|+|++ +++..+..++.++.+.++.....|+++|+| |+|... ..+..++.......++.+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~---~~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG---GSLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC---ccHHHHHHhcchHHHHHH
Confidence 777777789999999999998 688888888899999887655567888877 999763 356666654333456778
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDELKRGA 224 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~ 224 (277)
+..++.++..+.+ .+.|++.+.|+.+|++.|...+....+.+|+++.+...
T Consensus 172 ~~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~ 222 (260)
T 2xtp_A 172 VAACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLI 222 (260)
T ss_dssp HHHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC
T ss_pred HHHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHH
Confidence 8889988876666 78899999999999999999998876677877765443
No 4
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.89 E-value=2.4e-22 Score=169.15 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=123.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
++++++...|+++|.+|||||||+|+|+|..+. ..+....|+........... +..+.||||||+.+... ...+.+
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~--i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l~~ 80 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS--IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVLGH 80 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS--CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc--ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhHHH
Confidence 445556699999999999999999999998763 22333444444343344456 88999999999987542 234555
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHH-HHHHHHHhCcCccCcEEEEEeCCCCC-CcccccHHHHhcccCCchH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETA-VHRLPNLFGKNVFDYMIVVFTGGDDL-EDHEKTLEDFLGHECPKPL 169 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~~~ivv~nk~D~~-~~~~~~l~~~l~~~~~~~~ 169 (277)
.+......++..+|++++|+|++.+.+..+... +..+... + .|+++|+||+|.. .. ..+...+..
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-~----~pvilV~NK~Dl~~~~--~~~~~~~~~------ 147 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-N----KPVIVVINKIDKIGPA--KNVLPLIDE------ 147 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-C----CCEEEEEECGGGSSSG--GGGHHHHHH------
T ss_pred HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-C----CCEEEEEECccCCCCH--HHHHHHHHH------
Confidence 666666666678899999999997777777665 5555542 2 3999999999987 34 333333332
Q ss_pred HHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCCh
Q 023779 170 KEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (277)
Q Consensus 170 ~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (277)
+...++ ..++ +.|+..+.|+++|++.|...++. +...|+.
T Consensus 148 --l~~~~~~~~~i~------~vSA~~g~gv~~L~~~l~~~l~~-~~~~~~~ 189 (308)
T 3iev_A 148 --IHKKHPELTEIV------PISALKGANLDELVKTILKYLPE-GEPLFPE 189 (308)
T ss_dssp --HHHHCTTCCCEE------ECBTTTTBSHHHHHHHHHHHSCB-CCCSSCT
T ss_pred --HHHhccCCCeEE------EEeCCCCCCHHHHHHHHHHhCcc-CCCCCCc
Confidence 333333 2233 45888899999999999999875 3334443
No 5
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=1.7e-21 Score=163.14 Aligned_cols=167 Identities=18% Similarity=0.177 Sum_probs=117.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|+|||||+|+|+|..... .+..+.|+...........+..+.||||||+.+.. ..+...+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchh---hHHHHHHHHHH
Confidence 34789999999999999999999987632 22233344333333344678899999999998743 34455566666
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc-HHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT-LEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~-l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++.+++..+..+++.+...+. . .|+++|+||+|.... .. +.+.+.. + +
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~~--------~---~ 144 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYHE--------L---L 144 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHHH--------T---S
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHHH--------h---c
Confidence 677889999999999987788877777677766432 2 399999999998755 22 3222222 2 1
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+.. ...+.||+.+.+++.|++.|...++.
T Consensus 145 ~~~-----~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 PEA-----EPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp TTS-----EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred CcC-----cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 211 11256888899999999999887754
No 6
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.88 E-value=1.2e-21 Score=157.30 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=116.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
....++|+|+|.+|+|||||+|+|++...........+.|............+..+.||||||+.+....... ...+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~-~~~~~~ 104 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAA-KAHWEQ 104 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTH-HHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhh-HHHHHH
Confidence 3456899999999999999999999886321222223344444444433345678999999998875443322 222222
Q ss_pred HH---hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 96 CL---GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 96 ~~---~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.+ ......+|++++|+|++.+++..+..++.++.. .+ .|+++|+||+|.... ..+...+.. +...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 172 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP-TG----KPIHSLLTKCDKLTR--QESINALRA-----TQKS 172 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG-GC----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh-cC----CCEEEEEeccccCCh--hhHHHHHHH-----HHHH
Confidence 22 222456899999999997788878777777776 22 389999999998765 444444443 3333
Q ss_pred Hhhc-------CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~-------~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..+ ...++ ..|++.+.++.+|++.|.+.++.
T Consensus 173 l~~~~~~~~~~~~~~~------~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 173 LDAYRDAGYAGKLTVQ------LFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHTCCSCEEEE------EEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHhhhhcccCCCCeEE------EeecCCCcCHHHHHHHHHHhcCc
Confidence 3332 22333 45778889999999999998865
No 7
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.86 E-value=2.7e-20 Score=146.19 Aligned_cols=172 Identities=16% Similarity=0.254 Sum_probs=107.5
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
|.....+|+|+|++|+|||||+|+|++...........+.|....... . +..+.+|||||+.+...+... ...+.
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~---~-~~~~~l~Dt~G~~~~~~~~~~-~~~~~ 93 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI---I-NDELHFVDVPGYGFAKVSKSE-REAWG 93 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE---E-TTTEEEEECCCBCCCSSCHHH-HHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE---E-CCcEEEEECCCCCccccCHHH-HHHHH
Confidence 344568999999999999999999998763222222223333333222 2 347899999998876543321 22222
Q ss_pred HHHhh---cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGM---AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~---~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
..... ....+|++++|+|++.+.+..+..++.++.. .+ .|+++|+||+|.... ..+...... +.+
T Consensus 94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~ 161 (195)
T 1svi_A 94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-YG----IPVIVIATKADKIPK--GKWDKHAKV-----VRQ 161 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCG--GGHHHHHHH-----HHH
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCEEEEEECcccCCh--HHHHHHHHH-----HHH
Confidence 22222 2345699999999997788777766777765 22 289999999998766 445444433 443
Q ss_pred HHhh-cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 172 ILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 172 ~~~~-~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+.. .+..++ ..|++.+.++.+|++.|.+.+.
T Consensus 162 ~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 162 TLNIDPEDELI------LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHTCCTTSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcccCCCceE------EEEccCCCCHHHHHHHHHHHhc
Confidence 3322 122333 4577788999999999987764
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=1.1e-19 Score=142.51 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=114.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH--HHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF--VGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~--~~~~ 92 (277)
|.....+|+|+|++|+|||||+|+|++...... ....+.|...... ..+..+.+|||||+......... ....
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY----LVNSKYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE----EETTTEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE----EECCcEEEEECCCCccccCChhhHHHHHH
Confidence 445568999999999999999999998773222 1222333333222 23456889999998764432221 1112
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
+..........+|++++|+|++...+..+...+.++... + .|+++|+||+|.... ......... +..+
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-~----~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~ 161 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-N----IPFTIVLTKMDKVKM--SERAKKLEE-----HRKV 161 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGSCG--GGHHHHHHH-----HHHH
T ss_pred HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCh--HHHHHHHHH-----HHHH
Confidence 222222233567999999999877777777777777764 2 289999999998765 455555544 5555
Q ss_pred HhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
....+ ..++ +.|++.+.+++++++.|.+.+.+
T Consensus 162 ~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 162 FSKYGEYTII------PTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHSSCCSCEE------ECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HhhcCCCceE------EEecCCCCCHHHHHHHHHHHhhc
Confidence 55433 2333 45788889999999999988754
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.85 E-value=9.7e-21 Score=155.91 Aligned_cols=154 Identities=24% Similarity=0.308 Sum_probs=108.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+++|++|+|||||+|+|++........ ..+.|........ .+.+..+.||||||+.+.........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~-~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSR-TMGGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEE-EECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999877533222 1223333333333 368889999999999876554444444444444
Q ss_pred hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++|++++|+++. .+++..+..+++.+...++.....|+++|+||+|.....+..+++++.. ....+++++..+
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~ 189 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG 189 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence 245789999998887 4677777889999999988877779999999999864434677777754 222355555443
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.85 E-value=8.4e-20 Score=150.97 Aligned_cols=196 Identities=21% Similarity=0.328 Sum_probs=125.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+++|.+|+|||||+|+|++......... .+.|........ ...+..+.||||||+.+...........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~-~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSR-SRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEE-EETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEE-eeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 458999999999999999999998875333221 223333333332 357788999999999875443333333333322
Q ss_pred hhcCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..+++|+++||++++ .+++..+..++..+...++.+.+.|+++|+||+|.....+..++++++. ....++..+...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 246789999998886 3677777888888988888765669999999999875533467777653 122244333310
Q ss_pred -C---------CeEEEEeCCCcccc---------cChhHHHHHHHHHHHHHhhcCCCCCCh
Q 023779 177 -D---------NRCVLFDNKTKDEA---------KGTEQVRQLLSLVNSVIVQNGGQPYTD 218 (277)
Q Consensus 177 -~---------~~~~~~~~~~~~s~---------~~~~~~~~L~~~i~~~~~~~~~~~~~~ 218 (277)
+ ..+.+..+...... ........|+..|..++...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 0 23333333221110 111357799999999998766655443
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.82 E-value=6.9e-19 Score=141.83 Aligned_cols=176 Identities=16% Similarity=0.084 Sum_probs=102.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+|+|++|||||||+|+|++..+.... ....|....... ....+..+.||||||+.+......... . ...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~--~~~~t~~~~~~~-~~~~~~~~~l~DtpG~~~~~~~~~~~~-~-~~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS--YSFTTKNLYVGH-FDHKLNKYQIIDTPGLLDRAFENRNTI-E-MTT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC--C-----CEEEEE-EEETTEEEEEEECTTTTTSCGGGCCHH-H-HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCCcceeeeeee-eecCCCeEEEEECCCCcCcccchhhhH-H-HHH
Confidence 45699999999999999999999987753221 122233333322 235677899999999865321111100 0 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH-HhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED-FLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~-~l~~~~~~~~~~~~~~ 175 (277)
+...+..+|++++|+|++.+.+........++..+.......|+++|+||+|.... ..+.. .... +..+...
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~-----~~~~~~~ 174 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLL-----IKQILDN 174 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHH-----HHHHHHH
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHH-----HHHHHHh
Confidence 22224567999999999854332222233344443222112499999999998754 22211 1111 3444444
Q ss_pred cC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+ ..++ .+|++.+.++.++++.|...+..
T Consensus 175 ~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 175 VKNPIKFS------SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CCSCEEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCceEE------EEecccCCCHHHHHHHHHHHHHH
Confidence 44 2333 46788889999999998887644
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=4.4e-19 Score=146.92 Aligned_cols=173 Identities=17% Similarity=0.215 Sum_probs=99.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC----CCCcceeeEEEEEe-eeCCc--eEEEEeCCCCCCCCCCch---H
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG----SSGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSAGSE---F 88 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~-~~~~~--~~~liDtpG~~~~~~~~~---~ 88 (277)
..+|+|+|.+|+|||||+|+|++...+..... ....|+........ ..++. .+.||||||+++...... .
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 47999999999999999999998887654321 01222222222221 12333 799999999976644322 1
Q ss_pred HH----HHHHHHHhh---------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccc
Q 023779 89 VG----KEIVKCLGM---------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHE 154 (277)
Q Consensus 89 ~~----~~~~~~~~~---------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~ 154 (277)
+. ..+..++.. ...++|+++++++.. .++...+..+++.+.. ..|+++|+||+|....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~-- 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP-- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--
Confidence 22 122233321 123578999998776 4678888777776665 2399999999998766
Q ss_pred ccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 155 KTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 155 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..+... +.+.+...+.+++. .|+..+.++.++++.|...++.
T Consensus 160 ~e~~~~~~~-----i~~~l~~~~i~v~~------~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 160 EECQQFKKQ-----IMKEIQEHKIKIYE------FPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCCC------C-----------CHHHHHTCSE
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEc------CCCCCChhHHHHHHHHhcCCCc
Confidence 566655554 56666666655443 3556678899999998887653
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.81 E-value=1.1e-19 Score=140.13 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|+|||||+|+|++........ ..+.|...... ...+++..+.+|||||+..... ..........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLRE-HIHIDGMPLHIIDTAGLREASD---EVERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-STTCCCSCEEE-EEEETTEEEEEEECCCCSCCSS---HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeC-CCCceeceeeE-EEEECCeEEEEEECCCcccchh---HHHHHHHHHH
Confidence 34899999999999999999999876421111 12223222222 2335777899999999875321 1111111111
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++..+|++++|+|++.+.+.....++..+....... .|+++|+||+|.... . . .+ . ...+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~--~-~-~~-~-----------~~~~ 139 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGE--T-L-GM-S-----------EVNG 139 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCC--C-C-EE-E-----------EETT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcc--h-h-hh-h-----------hccC
Confidence 22356789999999998555545556666666544322 499999999996432 0 0 00 0 0011
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+ ...||+.+.++++|++.|.+.+.
T Consensus 140 ~~~------~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 140 HAL------IRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EEE------EECCTTTCTTHHHHHHHHHHHC-
T ss_pred Cce------EEEeCCCCCCHHHHHHHHHHHhh
Confidence 122 25688889999999999987754
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.80 E-value=2.7e-19 Score=149.95 Aligned_cols=168 Identities=16% Similarity=0.197 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC-CCCCCchHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVGKEIVKC 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~~~~~~~ 96 (277)
+..+|+|+|++|+|||||+|+|+|..... .+....|+.........+.+..+.+|||||+. .. ...+...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i--~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISI--TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEE--CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCCCcceeeEEEEEEECCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 34689999999999999999999987532 22233333333333444677889999999976 21 11222223333
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++..+|++++|+|++. ++..+..+++.+.. ...|+++++||+|..... ..+.+. +..+....
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~~-~~~~~~--------l~~l~~~~ 146 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQEK-ADLLPH--------LQFLASQM 146 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCCH-HHHHHH--------HHHHHTTS
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCccH-HHHHHH--------HHHHHHhc
Confidence 3456788999999999985 88888766555542 123999999999977520 223222 33333333
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+...+ .+.|++.+.++..|++.+...++.
T Consensus 147 ~~~~~-----i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 147 NFLDI-----VPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CCSEE-----EECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CcCce-----EEEECCCCCCHHHHHHHHHHhCCc
Confidence 42111 245778889999999999888764
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=2e-18 Score=135.88 Aligned_cols=172 Identities=13% Similarity=0.074 Sum_probs=102.5
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHH
Q 023779 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
.+.+.....+|+|+|.+|||||||+|+|++........ ..|.......+ ...+..+.+|||||...
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~---------- 75 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETF-EKGRVAFTVFDMGGAKK---------- 75 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEE-EETTEEEEEEEECCSGG----------
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEE-EeCCEEEEEEECCCCHh----------
Confidence 34555677999999999999999999999877533111 22222323323 36778899999999643
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc---------CccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK---------NVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
+......++..+|++++|+|++.+.+.... ..++...... ....|++||+||+|.... ...+++..
T Consensus 76 -~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~ 150 (199)
T 4bas_A 76 -FRGLWETYYDNIDAVIFVVDSSDHLRLCVV--KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVE 150 (199)
T ss_dssp -GGGGGGGGCTTCSEEEEEEETTCGGGHHHH--HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred -HHHHHHHHHhcCCEEEEEEECCcHHHHHHH--HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHH
Confidence 223334567889999999999844332221 1222222211 013499999999998765 34433332
Q ss_pred ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
. .. +..+....+..++ .+|++.+.++.++++.|.+.+...
T Consensus 151 ~-~~--~~~~~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 151 I-LD--LTTLMGDHPFVIF------ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp H-HT--HHHHHTTSCEEEE------ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred H-hc--chhhccCCeeEEE------EeeCCCccCHHHHHHHHHHHHHHH
Confidence 2 00 1112122222222 467888899999999998887653
No 16
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=7.3e-19 Score=133.50 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=102.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
++|+++|++|+|||||+|++++....... ...+.+........ ...+..+.+|||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVV-ETDRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEE-EETTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEE-EeCCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999977632111 11222333333333 35777899999999876432 11233344444
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
.+..+|++++|+|++.+++..+..+..++... + .|+++|+||+|.... . +... ++. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~----~p~ilv~nK~Dl~~~--~---~~~~--------~~~-~~~~- 135 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK-G----KPVILVATKVDDPKH--E---LYLG--------PLY-GLGF- 135 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH-T----CCEEEEEECCCSGGG--G---GGCG--------GGG-GGSS-
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc-C----CCEEEEEECcccccc--h---HhHH--------HHH-hCCC-
Confidence 56788999999999977777776666766652 2 289999999997643 1 1111 111 2232
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
....+.|++.+.++.++++.+.+.+
T Consensus 136 ----~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 136 ----GDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----CCeEEEecccCCChHHHHHHHHHhC
Confidence 1223668888999999999987654
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.80 E-value=1.7e-18 Score=132.71 Aligned_cols=161 Identities=15% Similarity=0.122 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|+|||||+|++++......... +.+......... .++ ..+.+|||||... +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHIT--TLGASFLTKKLN-IGGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCC--CCSCEEEEEEEE-SSSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCC--ccceEEEEEEEE-ECCEEEEEEEEECCCcHh-----------hhh
Confidence 448999999999999999999997664322211 112222112222 333 3588999999543 233
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQE---------AESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHH---------HHHHHH
Confidence 33456788999999999984322222 23444455544333 3899999999976431111111 334455
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ..|++.+.++.++++.|.+.+.
T Consensus 140 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHY------HTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEE------EecCCCCCCHHHHHHHHHHHHh
Confidence 5555554 4577888999999999987764
No 18
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=1.1e-18 Score=134.77 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=103.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|+|++..+..... .+.+........ ..++..+.+|||||.......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--GGITQHIGAYQV-TVNDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--CSSSTTCCCCEE-EETTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--CceeEeeeEEEE-EeCCceEEEEECCCCHHHHHH-----------
Confidence 355899999999999999999999877533221 122222222222 357788999999997653221
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
....+..+|++++|+|++.+........+..+.. .. .|+++|+||+|........+...+.. ...+....
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~---~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAKA---AN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGG---GS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHh---CC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 1235678899999999986555555554444432 22 38999999999765311122222221 10011111
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..+.. ...|++.+.++++|++.|...+..
T Consensus 142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp TSSEEE----EECCSSSSHHHHHHHHHHHHHHHH
T ss_pred CCcccE----EEEecCCCCCHHHHHHHHHHhhhh
Confidence 111122 246888899999999999888765
No 19
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.80 E-value=5.2e-19 Score=138.27 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=101.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.+...+|+|+|++|+|||||+|+|++...........+. ........ .. ...+.+|||||......
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~--------- 86 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTVY-RHDKRIKLQIWDTAGQERYRT--------- 86 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC--EEEEEEEE-ETTEEEEEEEEECCSCCSSCC---------
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE--EEEEEEEE-ECCeEEEEEEEeCCCcHHHhh---------
Confidence 345589999999999999999999987653222222222 22222221 23 34689999999764322
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|++||+||+|.........+. ...+
T Consensus 87 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~ 153 (189)
T 2gf9_A 87 --ITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAED---------GRRL 153 (189)
T ss_dssp --SGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHH
T ss_pred --hHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHHH---------HHHH
Confidence 12335678899999999983322222 23444455443222 3999999999976431111111 3344
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
....+..++ ..|++.+.++.++++.|.+.+.+
T Consensus 154 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 154 ADDLGFEFF------EASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 444454444 46778889999999999887654
No 20
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=7.7e-19 Score=135.68 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=98.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|+|||||+|+|++...........+.+..... .. ..+ ..+.+|||||.... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~-~~~~~~~~~l~Dt~G~~~~-----------~ 78 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRI--IE-VSGQKIKLQIWDTAGQERF-----------R 78 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEE--EE-ETTEEEEEEEEECTTGGGT-----------C
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEE--EE-ECCeEEEEEEEECCCChHh-----------h
Confidence 45689999999999999999999977653222211122221211 11 233 46899999995431 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+.
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 147 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEE---------AKQFA 147 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence 112223456799999999984322222 23444455543333 4999999999975431111111 33444
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+..++ ..|++.+.++.++++.|.+.+.
T Consensus 148 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 148 EENGLLFL------EASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHC
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 55555444 4577888999999999887653
No 21
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.79 E-value=2.2e-17 Score=136.48 Aligned_cols=165 Identities=19% Similarity=0.192 Sum_probs=104.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.++|+|+|++|||||||+|+|+|... ..+. ..+.|........ .+.+..+.+|||||+.+....... ..+.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~-~~~~t~~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~~--~~~~~~~~ 77 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGN-WPGVTVEKKEGIM-EYREKEFLVVDLPGIYSLTAHSID--ELIARNFI 77 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEE-CTTSSCEEEEEEE-EETTEEEEEEECCCCSCCCSSCHH--HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCC-CCCeEEEeeEEEE-EECCceEEEEeCCCccccccCCHH--HHHHHHhh
Confidence 47999999999999999999999875 3332 2234444433333 367888999999999875442221 11222211
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
....+|++++|+|++ .. .....++..+.+. +. .|+++|+||+|.... .. .. .....+....+.
T Consensus 78 -~~~~~d~vi~v~D~~-~~-~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~--~~----~~----~~~~~l~~~lg~ 140 (271)
T 3k53_A 78 -LDGNADVIVDIVDST-CL-MRNLFLTLELFEM-EV---KNIILVLNKFDLLKK--KG----AK----IDIKKMRKELGV 140 (271)
T ss_dssp -HTTCCSEEEEEEEGG-GH-HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHH--HT----CC----CCHHHHHHHHSS
T ss_pred -hccCCcEEEEEecCC-cc-hhhHHHHHHHHhc-CC---CCEEEEEEChhcCcc--cc----cH----HHHHHHHHHcCC
Confidence 236789999999998 32 1222222233332 21 399999999996533 10 11 113344445565
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.++ +.|+..+.++.++++.+...+...
T Consensus 141 ~~~------~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 141 PVI------PTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp CEE------ECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred cEE------EEEeCCCCCHHHHHHHHHHHHhcc
Confidence 544 567888899999999999988654
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=136.33 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=100.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
++..+|+|+|++|+|||||+|+|++...... ...+.+......... .++ ..+.+|||||.....
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 72 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVE-INGEKVKLQIWDTAGQERFR----------- 72 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEE-ETTEEEEEEEEEETTGGGCS-----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEE-ECCEEEEEEEEcCCCchhhh-----------
Confidence 4558999999999999999999998765322 222333333333322 455 568999999954321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+... ..++..+..... ..|+++|+||+|........... ...+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (181)
T 3tw8_B 73 TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETED---------AYKFA 140 (181)
T ss_dssp SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHHH---------HHHHH
Confidence 222335678899999999984322222 233344444322 24999999999976441111111 23334
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.|.+.+..
T Consensus 141 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 141 GQMGIQLF------ETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 44454444 46788889999999998887654
No 23
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=139.71 Aligned_cols=163 Identities=14% Similarity=0.056 Sum_probs=97.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+|+|++|+|||||+|+|++...+... ...|........ .+++..+.+|||||.... ...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~ 83 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKF-KSSSLSFTVFDMSGQGRY-----------RNL 83 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEE-ECSSCEEEEEEECCSTTT-----------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEE-EECCEEEEEEECCCCHHH-----------HHH
Confidence 46689999999999999999999987632222 122333333322 356788999999996542 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH-
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL- 173 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~- 173 (277)
...++..+|++++|+|++.+.+... ..++..+...... ....|+++|+||+|.... ...++.. ..+
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~---------~~~~ 152 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVS---------QLLC 152 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHH---------HHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHH---------HHhC
Confidence 2345677899999999983321122 1222222222110 023499999999998654 3333222 122
Q ss_pred -hhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 -QLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 -~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.... ..+.. ...|++.+.++.+|++.|.+.+.
T Consensus 153 ~~~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 153 LENIKDKPWHI----CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp GGGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHC-
T ss_pred hhhccCCceEE----EEccCCCCcCHHHHHHHHHHHHH
Confidence 1111 11111 24688888999999999987764
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.79 E-value=4.7e-19 Score=137.28 Aligned_cols=164 Identities=22% Similarity=0.186 Sum_probs=99.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.....+|+++|++|+|||||+|+|++...........+.+.. ..... .. ...+.+|||||....
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~Dt~G~~~~----------- 74 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF--SQTLA-VNDATVKFEIWDTAGQERY----------- 74 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE--EEEEE-ETTEEEEEEEEECCCSGGG-----------
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE--EEEEE-ECCEEEEEEEEeCCCChhh-----------
Confidence 345589999999999999999999977653322222222221 12121 23 346899999995421
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
......++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+
T Consensus 75 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~---------~~~~ 143 (181)
T 2efe_B 75 HSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAED---------AQTY 143 (181)
T ss_dssp GGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHH
T ss_pred hhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHH---------HHHH
Confidence 1112223467799999999984332222 34444555443223 3899999999976441111111 3344
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
....+..++ ..|++.+.++.++++.|.+.+..
T Consensus 144 ~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 144 AQENGLFFM------ETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HHHTTCEEE------ECCSSSCTTHHHHHHHHHHTCC-
T ss_pred HHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 444454444 45778889999999998876543
No 25
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.79 E-value=2e-18 Score=132.41 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=99.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|+|||||+|+|++...... .+|........ .+.+..+.+|||||... +...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~~ 67 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETV-TYKNLKFQVWDLGGLTS-----------IRPY 67 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEE-EETTEEEEEEEECCCGG-----------GGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEE-EECCEEEEEEECCCChh-----------hhHH
Confidence 3458999999999999999999987664221 22222222222 35678899999999643 2222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH-HHH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK-EIL 173 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~-~~~ 173 (277)
...++..+|++++|+|++.+.+.... ..++...... ....|+++|+||+|.... ....+.... +. ...
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 138 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGIS--KSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LGLPAL 138 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHH--HHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HTGGGC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHH--HHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hCchhc
Confidence 34467889999999999844333321 1223322221 022499999999998755 333222211 10 001
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..+ ...|++.+.++.++++.+.+.+..
T Consensus 139 ~~~~~~~------~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 139 KDRKWQI------FKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTSCEEE------EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred cCCceEE------EECcCCCCcCHHHHHHHHHHHHhh
Confidence 1111122 246788889999999999887754
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=4.8e-19 Score=156.00 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=110.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
+...+|+++|++|||||||+|+|++........ ..+.|....... ..+++..+.||||||+.+.....+.+.......
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~-~~gtT~d~~~~~-~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTS-FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEE-EEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecC-CCCceeeeeEEE-EEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence 345899999999999999999999877532211 122333332222 336788899999999854332111111110000
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++..+|++++|+|++.+.+..+..++..+... + .|+++|+||+|.........+++... +...+...
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~~~ 320 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL 320 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCGGG
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc-C----CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcccC
Confidence 11133456999999999988888777666655542 2 38999999999875421223333332 33322222
Q ss_pred C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCC
Q 023779 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (277)
Q Consensus 177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~ 215 (277)
. ..++ ..||+.+.++.+|++.+...+.......
T Consensus 321 ~~~~~~------~~SA~tg~~v~~l~~~i~~~~~~~~~~~ 354 (436)
T 2hjg_A 321 DYAPIL------FMSALTKKRIHTLMPAIIKASENHSLRV 354 (436)
T ss_dssp TTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCCC
T ss_pred CCCCEE------EEecccCCCHHHHHHHHHHHHHHhhcCC
Confidence 2 2333 4688889999999999998887654433
No 27
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=138.71 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=97.1
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
.+.+...+|+|+|++|+|||||+|+|++....... ....+......... .++ ..+.+|||||... ...
T Consensus 21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~-------~~~ 90 (192)
T 2il1_A 21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVE-LRGKKIRLQIWDTAGQER-------FNS 90 (192)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEE-ETTEEEEEEEEEECCSGG-------GHH
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEE-ECCeEEEEEEEeCCCcHH-------HHH
Confidence 34455689999999999999999999987653222 12222233222222 344 4689999999542 111
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
. ...++..+|++++|+|++.+.+..+ ..++..+....... .|++||+||+|.........++ ..
T Consensus 91 ~----~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~~---------~~ 155 (192)
T 2il1_A 91 I----TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQQ---------GE 155 (192)
T ss_dssp H----HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HH
T ss_pred H----HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HH
Confidence 1 2223345699999999984333222 33444555543333 3999999999976431011111 23
Q ss_pred HHHhhc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 171 EILQLC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 171 ~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+.... +..++ ..|++.+.++.++++.|.+.+..
T Consensus 156 ~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 156 KFAQQITGMRFC------EASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HHHHTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 333332 33333 46788889999999999877643
No 28
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.79 E-value=1.9e-19 Score=139.83 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=94.1
Q ss_pred CCCCCCCCCCCCCCC--CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCC
Q 023779 1 MGERVVDGDWKPTSP--SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPG 78 (277)
Q Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG 78 (277)
||.++.....+.+.+ ..+..+|+++|++|+|||||+|+|++........ ..+.+ .... .+++..+.+|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-t~~~~----~~~~-~~~~~~~~i~Dt~G 74 (181)
T 2h17_A 1 MGSSHHHHHHSSGLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSN----VEEI-VINNTRFLMWDIGG 74 (181)
T ss_dssp --------------------CEEEEEEEETTSSHHHHHHHHHTTSCEEEEC-CSSSS----CEEE-EETTEEEEEEEESS
T ss_pred CCcccccccccCCccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCC-cCcee----eEEE-EECCEEEEEEECCC
Confidence 566665544333332 3466899999999999999999999876521111 11211 1222 24678899999999
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCccccc
Q 023779 79 LFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKT 156 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~ 156 (277)
.... ......++..+|++++|+|++.+.+... ...++...... ....|+++|+||+|.... ..
T Consensus 75 ~~~~-----------~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~ 139 (181)
T 2h17_A 75 QESL-----------RSSWNTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MT 139 (181)
T ss_dssp SGGG-----------TCGGGGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CC
T ss_pred CHhH-----------HHHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccC--CC
Confidence 6532 1222345678899999999985433333 11223332211 122499999999997654 22
Q ss_pred HHHHhcccCCchHHHHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 157 LEDFLGHECPKPLKEILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 157 l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.++.... +. + .... ..+.. ...|++.+.++.++++.|.+
T Consensus 140 ~~~i~~~-----~~-~-~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 140 VAEISQF-----LK-L-TSIKDHQWHI----QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp HHHHHHH-----TT-G-GGCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred HHHHHHH-----hC-c-ccccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence 2222111 00 0 1111 11111 25688888999999998764
No 29
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=8.3e-19 Score=155.32 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=116.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|.+|+|||||+|+|++...+.... ..+.|....... ...++..+.||||||+.................
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~-~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTS-FTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEE-EEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEE-EEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 456899999999999999999999876432221 122233322222 236778999999999865322111100111111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
...++..+|++++|+|++.+++..+..++.++.+. + .|++||+||||.........+++.+. +...+...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 340 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQFL 340 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHhcccC
Confidence 11133556999999999988888888887777762 3 38999999999875422333443333 33333322
Q ss_pred C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCCCChHH
Q 023779 177 D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQPYTDEL 220 (277)
Q Consensus 177 ~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~~~~~~ 220 (277)
+ ..++ ..||+.+.++.+|++.+...+.......-...+
T Consensus 341 ~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~~~t~~l 379 (456)
T 4dcu_A 341 DYAPIL------FMSALTKKRIHTLMPAIIKASENHSLRVQTNVL 379 (456)
T ss_dssp TTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCCEE------EEcCCCCcCHHHHHHHHHHHHHHhcccCCHHHH
Confidence 2 2333 468888999999999999988765544433333
No 30
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=2.7e-18 Score=133.74 Aligned_cols=162 Identities=14% Similarity=0.117 Sum_probs=100.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|+|||||+|++++.. .... .+|......... +++..+.+|||||.. ++...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~-----------~~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI----SPTLGFNIKTLE-HRGFKLNIWDVGGQK-----------SLRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC----CCCSSEEEEEEE-ETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc----cccCccceEEEE-ECCEEEEEEECCCCH-----------hHHHH
Confidence 456999999999999999999999876 2211 222222233232 577889999999953 23334
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+.+..+ ...++...... ....|+++|+||+|.... ...++.... +. +.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 147 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEA-----LE--LD 147 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHH-----hC--hh
Confidence 4556789999999999984433222 11223322221 112499999999998654 333322211 00 00
Q ss_pred hc-CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LC-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ...+.. ...|++.+.+++++++.|.+.+.+
T Consensus 148 ~~~~~~~~~----~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 148 SIRSHHWRI----QGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp GCCSSCEEE----EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hccCCceEE----EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 11 111111 256788889999999999988865
No 31
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.78 E-value=5.4e-19 Score=135.37 Aligned_cols=160 Identities=19% Similarity=0.132 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+++|++|+|||||+|+|++...........+.+.... ... ..+ ..+.+|||||.... ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~Dt~G~~~~-----------~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQ-YQNELHKFLIWDTAGLERF-----------RA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEE-ETTEEEEEEEEEECCSGGG-----------GG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEE-ECCeEEEEEEEcCCCchhh-----------hc
Confidence 348999999999999999999998765332222222222121 111 233 56889999996431 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH-HHHhcccCCchHHHHH
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL-EDFLGHECPKPLKEIL 173 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l-~~~l~~~~~~~~~~~~ 173 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.... ..+ .+. ...+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~--~~v~~~~--------~~~~~ 138 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV--REVMERD--------AKDYA 138 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG--CCSCHHH--------HHHHH
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc--cccCHHH--------HHHHH
Confidence 11223467799999999984332222 34445555542333 389999999997643 111 111 23344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+..++ ..|++.+.++.+|++.|.+.+.
T Consensus 139 ~~~~~~~~------~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 139 DSIHAIFV------ETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp HHTTCEEE------ECBTTTTBSHHHHHHHHHHHCC
T ss_pred HHcCCEEE------EEeCCCCcCHHHHHHHHHHHHh
Confidence 44454444 4577888999999999887653
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=2.1e-18 Score=136.31 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|||||||+|+|++...........+ ......... .. ...+.+|||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~~ 72 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG--IDFKVKTIY-RNDKRIKLQIWDTAGLER-----------YRT 72 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCS--EEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GHH
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccc--eeEEEEEEE-ECCeEEEEEEEECCCchh-----------hcc
Confidence 348999999999999999999998775332222222 222222222 23 34689999999643 223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........+. ...+..
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 141 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSER---------GRQLAD 141 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHHH---------HHHHHH
T ss_pred hHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 34455678899999999983322222 23444444433222 3999999999976541111111 333444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.++.++++.|...+..
T Consensus 142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 142 HLGFEFF------EASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp HHTCEEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HCCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 4454444 45777888999999988776643
No 33
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=135.94 Aligned_cols=164 Identities=18% Similarity=0.167 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|+|||||+|+|++....... ..+.+......... .++ ..+.+|||||.....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 79 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFR----------- 79 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEE-ETTEEEEEEEEEECCSGGGC-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEECCCcHhhh-----------
Confidence 34589999999999999999999976653222 22233333333222 444 468999999954321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|........... ...+.
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~ 148 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTT---------AKEFA 148 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHHH---------HHHHH
Confidence 112223467799999999984222111 34445555544333 3999999999976541111111 33344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...+..++ ..|++.+.++.++++.|.+.+...
T Consensus 149 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 149 DSLGIPFL------ETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp HHTTCCEE------EECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 55555554 357778899999999998887653
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1e-18 Score=137.07 Aligned_cols=165 Identities=21% Similarity=0.136 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
+...+|+|+|++|+|||||+|+|++...........+.+........ ......+.+|||||.... ...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 88 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERF-----------HSL 88 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGG-----------GGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhh-----------Hhh
Confidence 45689999999999999999999977643222222222222221211 123456899999995431 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+...
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~---------~~~~~~~ 157 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKD---------AKEYAES 157 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHT
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 1223467799999999984332222 33444455443222 3999999999976421111111 3444455
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++++|++.|.+.+..
T Consensus 158 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 158 IGAIVV------ETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp TTCEEE------ECBTTTTBSHHHHHHHHHHTCC-
T ss_pred cCCEEE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence 554444 46778889999999999887643
No 35
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3e-18 Score=132.62 Aligned_cols=164 Identities=16% Similarity=0.138 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+++|++|+|||||+|+|++....... ...+.+........ ..++. .+.+|||||... +.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~-----------~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVL-DVDGVKVKLQMWDTAGQER-----------FR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEE-EETTEEEEEEEEECCCC---------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEE-EECCEEEEEEEEeCCCcHH-----------HH
Confidence 34589999999999999999999977653211 11122222222211 23443 688999999543 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+..+ ..++..+....... .|+++|+||+|.........+. ...+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 143 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLA 143 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHH
Confidence 334445678899999999984322222 34445555543333 4999999999987541111111 22333
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.+.+.+..
T Consensus 144 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 144 KEYGLPFM------ETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHHTCCEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 44444443 45788889999999999887754
No 36
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.78 E-value=2e-18 Score=133.62 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=94.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
....+|+++|++|+|||||+|+|++........ .+.+......... .+ ...+.+|||||... +
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~ 71 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVT-VDGDKVATMQVWDTAGQER-----------F 71 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEEC-CSSSCCEEEEEECCC----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEE-EcCCcEEEEEEEECCCChH-----------h
Confidence 456899999999999999999999766432221 1122222222222 22 34689999999432 3
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--cCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFG--KNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
......++..+|++++|+|++.+.+... ..++..+..... .....|+++|+||+|............ ..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~--------~~ 143 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS--------AQ 143 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHH--------HH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHH--------HH
Confidence 3334456788999999999983322222 233444444332 012249999999999754310111111 23
Q ss_pred HHHhh-cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 171 EILQL-CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 171 ~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+... .+..++ ..|++.+.+++++++.|.+.+..
T Consensus 144 ~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 144 ELAKSLGDIPLF------LTSAKNAINVDTAFEEIARSALQ 178 (182)
T ss_dssp HHHHHTTSCCEE------EEBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 33332 223333 45778889999999999876543
No 37
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=9.8e-19 Score=136.66 Aligned_cols=163 Identities=14% Similarity=0.084 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+|+|++|+|||||+|+|++....... ..|........ ...+..+.+|||||.. .+...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~-~~~~~~~~l~Dt~G~~-----------~~~~~ 83 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKI-TKGNVTIKLWDIGGQP-----------RFRSM 83 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEE-EETTEEEEEEEECCSH-----------HHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEE-EeCCEEEEEEECCCCH-----------hHHHH
Confidence 34589999999999999999999976643211 22332333322 3567889999999943 22223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++..-+... ...++...... ....|++||+||+|.... ....++... +. + .
T Consensus 84 ~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~-~-~ 152 (188)
T 1zd9_A 84 WERYCRGVSAIVYMVDAADQEKIEA--SKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN-L-S 152 (188)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT-G-G
T ss_pred HHHHHccCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hC-h-h
Confidence 3334577899999999984322222 22233333221 122499999999998654 222222221 00 0 0
Q ss_pred hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
... ..+.. ...|++.+.++.+|++.|.+.+..
T Consensus 153 ~~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 153 AIQDREICC----YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hhccCCeeE----EEEECCCCCCHHHHHHHHHHHHHh
Confidence 011 11111 256888889999999998876543
No 38
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.78 E-value=9.8e-19 Score=133.85 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|+|++...........+. ........ .. +..+.+|||||.... ...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA--AFLTQTVC-LDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--EEEEEEEE-ECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 489999999999999999999976643222111222 22112121 23 456899999995431 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQE---------AQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHHH---------HHHHHHH
Confidence 2223467899999999984322222 23344444433333 3899999999975431111111 3334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+..++ ..|++.+.++.+|++.|.+.+.
T Consensus 141 ~~~~~~------~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 141 NSLLFM------ETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCEEE------ECCTTTCTTHHHHHHHHHHTSC
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 454444 4577888999999999877653
No 39
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=136.57 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=99.2
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee--eCCceEEEEeCCCCCCCCCCchHH
Q 023779 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--KDGQVVNVIDTPGLFDLSAGSEFV 89 (277)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~liDtpG~~~~~~~~~~~ 89 (277)
...|.....+|+|+|.+|||||||+|+|++....... ..|.......... .....+.+|||||......
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----- 87 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI----- 87 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-----
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHH-----
Confidence 3345566799999999999999999999987653221 1222222222221 2345689999999765322
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (277)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (277)
....++..+|++++|+|++.+.+... ..++..+..... ....|++||+||+|...........
T Consensus 88 ------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~--------- 151 (201)
T 3oes_A 88 ------LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAVE--------- 151 (201)
T ss_dssp ------CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHHH---------
T ss_pred ------HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHHH---------
Confidence 12335678899999999983222222 222222322211 1224899999999976441111111
Q ss_pred HHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 169 LKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...+....+..++ ..|++.+.++.++++.|.+.+...
T Consensus 152 ~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 152 GKKLAESWGATFM------ESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHTCEEE------ECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 2334444455444 468888999999999998887653
No 40
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=6.3e-18 Score=131.51 Aligned_cols=163 Identities=18% Similarity=0.140 Sum_probs=101.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|||||||+|+|++....... ..+.+......... .++ ..+.+|||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDS--NHTIGVEFGSKIIN-VGGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCSEEEEEEEEEE-ETTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCccceEEEEEEEE-ECCEEEEEEEEeCCCcHH-----------HH
Confidence 44589999999999999999999976653221 12222222222222 344 4689999999542 23
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|..........+ ...+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLE---------ASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHH---------HHHHH
Confidence 344556788999999999984222222 23444444443333 4999999999975431111111 33344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.+...+..
T Consensus 143 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 143 QENELMFL------ETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 44454444 45777889999999998776643
No 41
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=3.1e-18 Score=140.21 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=101.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch--HHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE--FVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~ 97 (277)
++|+|+|++|||||||+|+|+|....... . .+.|........ .+.+..+.+|||||+.+...... ...+.+....
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~-~-pg~Tv~~~~~~~-~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGN-W-PGVTVEKKTGEF-LLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEE-C-TTSSSEEEEEEE-EETTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccC-C-CCceEEEEEEEE-EECCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 57999999999999999999998743222 2 344444433333 36788999999999987653210 1122232222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.. ...+|++++|+|++ .. .....+..++.+ .+ .|+++|+||+|.... ..+. . ....+....+
T Consensus 79 ~~-~~~~d~vi~VvDas-~~-~~~~~l~~~l~~---~~--~pvilv~NK~Dl~~~--~~~~---~-----~~~~l~~~lg 140 (256)
T 3iby_A 79 VI-DLEYDCIINVIDAC-HL-ERHLYLTSQLFE---LG--KPVVVALNMMDIAEH--RGIS---I-----DTEKLESLLG 140 (256)
T ss_dssp HH-HSCCSEEEEEEEGG-GH-HHHHHHHHHHTT---SC--SCEEEEEECHHHHHH--TTCE---E-----CHHHHHHHHC
T ss_pred Hh-hCCCCEEEEEeeCC-Cc-hhHHHHHHHHHH---cC--CCEEEEEEChhcCCc--CCcH---H-----HHHHHHHHcC
Confidence 21 26789999999998 31 112233333333 22 399999999996543 1110 1 1333444445
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
.+++ +.|++.+.|+++|++.|.+.
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 CSVI------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHTC
T ss_pred CCEE------EEECCCCCCHHHHHHHHHhh
Confidence 5544 46888889999999999888
No 42
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=2.2e-18 Score=151.85 Aligned_cols=165 Identities=19% Similarity=0.229 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+|+|.+|||||||+|.|++....... ...+.|....... ..+.+..+.+|||||+.... ...+...+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDT-VEWYGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEE-EEETTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEE-EEECCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 47999999999999999999987642111 1233444443333 34788899999999987531 11122344445555
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
++..+|++++|+|+..+++..+..+..+++.. + .|+++|+||+|.... ..... ..++. ..+.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~- 139 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE----FEREV-------KPELY-SLGF- 139 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSS-
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCC-
Confidence 66888999999999878888887777777653 3 389999999995321 11111 12222 2231
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
......||..+.|+.+|++.+...++.
T Consensus 140 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCCCHHHHHHHHHHhccc
Confidence 122356889999999999999888764
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=3.2e-19 Score=136.55 Aligned_cols=162 Identities=17% Similarity=0.105 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|+|++......... ..+......... .++ ..+.+|||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEP--TIGAAFLTQRVT-INEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--CSSEEEEEEEEE-ETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCC--ccceeEEEEEEE-ECCEEEEEEEEECCCChhh-----------hhh
Confidence 37899999999999999999997764322211 122222122222 333 36899999995431 111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+.+..+ ..++..+......+ .|+++|+||+|.... ........ .....+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~v~~----~~~~~~~~~ 140 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE--GGERKVAR----EEGEKLAEE 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS--SCCCCSCH----HHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc--ccccCCCH----HHHHHHHHH
Confidence 2233467799999999984322222 23344444443333 389999999997643 11000000 012334344
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.+..++ ..|++.+.++.++++.|.+.+
T Consensus 141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 KGLLFF------ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HTCEEE------ECCTTTCTTHHHHHHHHHTTS
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 454444 457778899999999987654
No 44
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=1.9e-18 Score=135.03 Aligned_cols=167 Identities=12% Similarity=0.095 Sum_probs=94.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVG 90 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~ 90 (277)
..+..+..+|+|+|++|+|||||+|+|++........ ...+......... .++ ..+.+|||||..
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~---------- 80 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVD-IDGERIKIQLWDTAGQE---------- 80 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEE-ETTEEEEEEEEECCCSH----------
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEE-ECCEEEEEEEEECCCch----------
Confidence 3344466899999999999999999999766532221 1222222222222 344 468999999943
Q ss_pred HHHH-HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCch
Q 023779 91 KEIV-KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKP 168 (277)
Q Consensus 91 ~~~~-~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~ 168 (277)
.+. .....++..+|++++|+|++...+... ..++..+..... ....|+++|+||+|.........+ .
T Consensus 81 -~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~-~-------- 149 (189)
T 1z06_A 81 -RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD-L-------- 149 (189)
T ss_dssp -HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH-H--------
T ss_pred -hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH-H--------
Confidence 122 222334567899999999983222222 234444444331 122499999999997543101111 1
Q ss_pred HHHHHhhcCCeEEEEeCCCcccccCh---hHHHHHHHHHHHHHh
Q 023779 169 LKEILQLCDNRCVLFDNKTKDEAKGT---EQVRQLLSLVNSVIV 209 (277)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~~~L~~~i~~~~~ 209 (277)
...+....+..++ ..|++.+ .++.++++.|.+.+.
T Consensus 150 ~~~~~~~~~~~~~------~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 150 AQKFADTHSMPLF------ETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHTTCCEE------ECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHHHcCCEEE------EEeCCcCCcccCHHHHHHHHHHHHh
Confidence 2334444454444 4567777 789999988876553
No 45
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.77 E-value=1.3e-18 Score=136.58 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=102.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+++|++|+|||||+|++++...... ...|...........++. .+.+|||||... +.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 85 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKYKNEEFILHLWDTAGQEE-----------YD 85 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GT
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEECCEEEEEEEEECCCcHH-----------HH
Confidence 4558999999999999999999997764221 122322222222334444 468999999442 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc-cccHHHHhcccCCchHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH-EKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~-~~~l~~~l~~~~~~~~~~ 171 (277)
.....++..+|++++|+|++.+.+..+ ..++..+..... . .|+++|+||+|..... .....+ ....
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~~~~--------~~~~ 154 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDVTKQ--------EGDD 154 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCCCHH--------HHHH
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcccHH--------HHHH
Confidence 333446788999999999984332222 334445554322 2 3999999999976430 011111 1333
Q ss_pred HHhhcCCe-EEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 172 ILQLCDNR-CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 172 ~~~~~~~~-~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+....+.. ++ ..|++.+.++.++++.|.+.+...
T Consensus 155 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 155 LCQKLGCVAYI------EASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHTCSCEE------ECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHHhcCCCEEE------EeecCCCCCHHHHHHHHHHHHHhc
Confidence 44444544 33 468888999999999998877553
No 46
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=2.8e-17 Score=127.36 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=100.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+|+|++|+|||||+|+|++....... ..|...........++ ..+.+|||||......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI----------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-----------
Confidence 4589999999999999999999965542221 1222222222333455 4578999999765321
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~ 139 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVISYEE---------GKALAE 139 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcceecHHH---------HHHHHH
Confidence 12234678899999999983222222 223333333322 1224999999999975431111111 334455
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
..+..++ +.|++.+.++.++++.+.+.+....
T Consensus 140 ~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 140 SWNAAFL------ESSAKENQTAVDVFRRIILEAEKMD 171 (181)
T ss_dssp HTTCEEE------ECCTTSHHHHHHHHHHHHHHHHTC-
T ss_pred HhCCcEE------EEecCCCCCHHHHHHHHHHHHHHhc
Confidence 5555544 4678889999999999998876543
No 47
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.77 E-value=1.2e-17 Score=138.23 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=106.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc--hHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS--EFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~ 96 (277)
..+|+|+|++|||||||+|+|+|... ..+. ..+.|......... +.+..+.+|||||+.+..... ..+...+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~-~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGN-WAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEEE-CTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccCC-CCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 48999999999999999999999874 2222 22344444333333 567889999999998765211 1122233322
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.. ....+|++++|+|++ .. .....+..++.+. + .|+++|+||+|.... ..+. . ....+....
T Consensus 80 ~~-~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~--~~~~---~-----~~~~l~~~l 141 (274)
T 3i8s_A 80 YI-LSGDADLLINVVDAS-NL-ERNLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIR---I-----EIDALSARL 141 (274)
T ss_dssp HH-HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHH-T----CCEEEEEECHHHHHH--TTEE---E-----CHHHHHHHH
T ss_pred HH-hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhc-C----CCEEEEEECccchhh--hhHH---H-----HHHHHHHhc
Confidence 21 236789999999998 32 2223444445543 2 399999999996543 1110 1 133344444
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+..++ +.|+..+.|+++|++.|...++..
T Consensus 142 g~~~i------~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 142 GCPVI------PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp TSCEE------ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred CCCEE------EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 55444 468888999999999998877643
No 48
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=6.7e-19 Score=134.84 Aligned_cols=161 Identities=14% Similarity=0.164 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|+|||||+|+|++........ .+.+......... .++ ..+.+|||||......
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~~----------- 67 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQIWDTAGQERFRT----------- 67 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEE-SSSCEEEEEEECCTTGGGTSC-----------
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEE-ECCEEEEEEEEeCCCChhhhh-----------
Confidence 34899999999999999999999776532221 1222222222222 333 3688999999643221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.... ....+. ...+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~~~~ 135 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEALAK 135 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTC--CSCHHH--------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcC--ccCHHH--------HHHHHH
Confidence 11123457799999999983322222 34445555544333 399999999997433 111111 233334
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.++.++++.|.+.+.+
T Consensus 136 ~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 136 ELGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HHTCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 4454443 45778889999999999888765
No 49
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.77 E-value=1.2e-18 Score=138.93 Aligned_cols=161 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+|+|.+|||||||++.++...+.....+..+ ........ ..++ ..+.||||+|.... ..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig--~d~~~k~~-~~~~~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG--IDFLSKTM-YLEDRTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEE-ECSSCEEEEEEECCSCTTTC-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccc--eEEEEEEE-EecceEEEEEEEECCCchhh-----------hh
Confidence 458999999999999999999986654222111111 11111111 1333 35789999996532 22
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++++++++++|+|++.+-+... ..++..+....+.++ |++||+||+|.........++ ...+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHHH
Confidence 23345678899999999984333322 455566666666554 999999999975431112221 233444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ++||+.+.+++++++.|.+.+.
T Consensus 147 ~~~~~~~------e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 147 ELNVMFI------ETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHHC-
T ss_pred HhCCeeE------EEeCCCCcCHHHHHHHHHHHHH
Confidence 5555544 5789999999999999887664
No 50
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=7.3e-19 Score=137.70 Aligned_cols=164 Identities=15% Similarity=0.110 Sum_probs=101.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|+|++|+|||||+|+|++..+........+.+........ ......+.||||||. ..+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~-----------~~~~~~~ 89 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQ-----------ERYRTIT 89 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHH-----------HHCHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCh-----------HHHHHHH
Confidence 4589999999999999999999976542222111122222222211 124457999999992 2333344
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++.+-+... ..++..+....... .|++||+||+|.........+. ...+....
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 158 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTEK---------GQLLAEQL 158 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHHHH
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHHHc
Confidence 445678899999999983222221 34455555543233 3999999999975431111111 23344444
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ..|++.+.++.++++.|.+.+..
T Consensus 159 ~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 159 GFDFF------EASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 55444 45788889999999999887754
No 51
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=1.7e-17 Score=135.96 Aligned_cols=164 Identities=19% Similarity=0.183 Sum_probs=104.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|||||||+|+|+|..... +.. .+.|........ ...+..+.+|||||..+...... .+.+...+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~-~~~-pg~tv~~~~~~~-~~~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~ 78 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYV-ANW-PGVTVEKKEGVF-TYKGYTINLIDLPGTYSLGYSSI--DEKIARDY 78 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEE-EEC-TTSCCEEEEEEE-EETTEEEEEEECCCCSSCCSSSH--HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcc-cCC-CCceEEEEEEEE-EECCeEEEEEECCCcCccCCCCH--HHHHHHHH
Confidence 34789999999999999999999977532 222 244544443333 35678899999999986543221 12222222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.. ...+|++++|+|++ .+.. ... ++..+...+ .|+++|+||+|.... ..+ . .....+....+
T Consensus 79 ~~-~~~~d~ii~V~D~t-~~~~-~~~---~~~~l~~~~--~pvilv~NK~Dl~~~--~~i----~----~~~~~l~~~lg 140 (258)
T 3a1s_A 79 LL-KGDADLVILVADSV-NPEQ-SLY---LLLEILEME--KKVILAMTAIDEAKK--TGM----K----IDRYELQKHLG 140 (258)
T ss_dssp HH-HSCCSEEEEEEETT-SCHH-HHH---HHHHHHTTT--CCEEEEEECHHHHHH--TTC----C----BCHHHHHHHHC
T ss_pred Hh-hcCCCEEEEEeCCC-chhh-HHH---HHHHHHhcC--CCEEEEEECcCCCCc--cch----H----HHHHHHHHHcC
Confidence 11 15789999999998 4322 222 333332223 399999999996533 111 0 11444555556
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+++ +.|++.+.|+.+|++.+......
T Consensus 141 ~~vi------~~SA~~g~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 141 IPVV------FTSSVTGEGLEELKEKIVEYAQK 167 (258)
T ss_dssp SCEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred CCEE------EEEeeCCcCHHHHHHHHHHHhhc
Confidence 5544 46788889999999999988753
No 52
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=7.9e-18 Score=132.99 Aligned_cols=165 Identities=16% Similarity=0.144 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|+|||||+|.|++..+.... ..+.+........ ..++ ..+.||||||... +.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~-----------~~ 92 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTL-EIQGKRVKLQIWDTAGQER-----------FR 92 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEE-EETTEEEEEEEECCTTCGG-----------GH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEE-EECCEEEEEEEEECCCcHh-----------HH
Confidence 34589999999999999999999976642211 1111112222222 2344 4789999999542 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+... ..++..+......+ .|++||+||+|.........++ ...+.
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 161 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAE---------AQSLA 161 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHH---------HHHHH
Confidence 223334577899999999983222221 23444455443233 3999999999976431011111 33444
Q ss_pred hhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 174 QLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 174 ~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
...+. .++ .+|++.+.++.++++.|.+.+....
T Consensus 162 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 162 EHYDILCAI------ETSAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp HHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred HHcCCCEEE------EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 55554 443 4678888999999999988776543
No 53
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=9.7e-19 Score=136.99 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|+|||||+|+|++........ ...+......... .++ ..+.+|||||......
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 85 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVN-IDGKQIKLQIWDTAGQESFRS----------- 85 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEE-ETTEEEEEEEECCTTGGGTSC-----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCchhhhh-----------
Confidence 45799999999999999999999766532221 1122222222222 344 4689999999543221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|++||+||+|.........++ ...+..
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 154 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREE---------GEAFAR 154 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHHH---------HHHHHH
Confidence 11123457799999999983222222 23444444433323 3999999999976431011111 233444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ..|++.+.++.++++.|.+.+.
T Consensus 155 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 155 EHGLIFM------ETSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HHTCEEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 4455444 3577788999999999877654
No 54
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=1.1e-17 Score=130.80 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------ceEEEEeCCCCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------QVVNVIDTPGLFDLSAG 85 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------~~~~liDtpG~~~~~~~ 85 (277)
+...+|+|+|++|+|||||+|+|++......... ...............+ ..+.+|||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence 4558999999999999999999997664222111 1111111011112232 4789999999642
Q ss_pred chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc
Q 023779 86 SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE 164 (277)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~ 164 (277)
+......++..+|++++|+|++.+.+..+ ..++..+..... ....|+++|+||+|.........+.
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~----- 149 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEEE----- 149 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHHH-----
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHHH-----
Confidence 23334456788999999999984322222 334444444322 1224999999999976431011111
Q ss_pred CCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 165 CPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+....+..++ ..|++.+.++.++++.|...+.
T Consensus 150 ----~~~~~~~~~~~~~------~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 150 ----ARELAEKYGIPYF------ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ----HHHHHHHHTCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 3334444454444 4577788999999999887764
No 55
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=3.6e-18 Score=130.12 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|++|+|||||+|++++...... .+|........ ...+..+.+|||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEE-ECSSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEE-EECCEEEEEEEcCCChh-----------hHHHHHH
Confidence 4799999999999999999987654221 12222222222 24678899999999643 2223334
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
++.++|++++|+|++.+-+... ...++...... ....|+++|+||+|.... ...++.... +. .....
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence 5688899999999984322222 22333333221 112499999999998654 333222221 00 01111
Q ss_pred -CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 178 -NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 178 -~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+. ...+|++.+.++.++++.|.+.+.
T Consensus 133 ~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 133 HRNWY----IQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp SCCEE----EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CccEE----EEEcccCCCcCHHHHHHHHHHHHh
Confidence 1111 125688888999999999987654
No 56
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.77 E-value=6.6e-18 Score=128.89 Aligned_cols=160 Identities=21% Similarity=0.122 Sum_probs=86.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|++++....... +...++.... ...++ ..+.+|||||... +...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~i~D~~g~~~-----------~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRS---IVVDGEEASLMVYDIWEQDG-----------GRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------CEEEEE---EEETTEEEEEEEEECC-------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC--CccccceEEE---EEECCEEEEEEEEECCCCcc-----------chhh
Confidence 478999999999999999999976643221 1122222111 12333 3578999999553 2223
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........+. ...+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 135 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVDE---------GRACAVV 135 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHHH---------HHHHHHH
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHHH---------HHHHHHH
Confidence 3345678899999999983322222 223333333211 1224999999999976541111111 2233344
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ +.|++.+.+++++++.+.+.+..
T Consensus 136 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 136 FDCKFI------ETSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TTCEEE------ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred hCCcEE------EeccCCCCCHHHHHHHHHHHHHh
Confidence 454444 46888889999999999887654
No 57
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=139.46 Aligned_cols=168 Identities=15% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|++|+|||||+|+|++..+........+.+... .... .++ ..+.||||||.... .....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~l~i~Dt~G~~~~-------~~~~~ 95 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQM--KTLI-VDGERTVLQLWDTAGQERF-------RSIAK 95 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEE--EEEE-ETTEEEEEEEEECTTCTTC-------HHHHH
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEE--EEEE-ECCEEEEEEEEECCCCcch-------hhhHH
Confidence 456899999999999999999999766422211111112111 1111 333 45899999996542 11122
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.++..+|++++|+|++.+.+..+ ..++..+....... .|++||+||+|.... ...+ ....-.......+.
T Consensus 96 ----~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~-~~~~v~~~~~~~~~ 166 (199)
T 2p5s_A 96 ----SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATE-GQKCVPGHFGEKLA 166 (199)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHT-TCCCCCHHHHHHHH
T ss_pred ----HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccc-cccccCHHHHHHHH
Confidence 22345699999999984322222 33444455443223 399999999997522 0000 00000001123344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+..++ +.|++.+.++.+++..|.+.+.
T Consensus 167 ~~~~~~~~------~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 167 MTYGALFC------ETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHTCEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCeEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 44455444 4577888999999999887764
No 58
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.77 E-value=1.3e-17 Score=133.00 Aligned_cols=168 Identities=18% Similarity=0.121 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|||||||+|+|++....... ..|...........++. .+.+|||||... +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY----TPTVFERYMVNLQVKGKPVHLHIWDTAGQDD-----------YDR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-----------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCchh-----------hhH
Confidence 4589999999999999999999987642221 11222222212223443 588999999543 222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----c-CCch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----E-CPKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~-~~~~ 168 (277)
....++..+|++++|+|++.+.+.... .++..+..... . .|++||+||+|.... ....+.+.. . ....
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 333456788999999999833222221 34444544332 2 399999999998765 333222210 0 0011
Q ss_pred HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...+....+. .++ .+|++.+.++.++++.|.+.+...
T Consensus 173 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 173 GQEMARSVGAVAYL------ECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp HHHHHHHTTCSEEE------ECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCEEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 3445555554 444 468888899999999998877653
No 59
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=5.9e-18 Score=134.87 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=73.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
...+|+++|++|+|||||+++|++........ ++........ ++ +..+.+|||||... +.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~-----------~~ 68 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-----SITDSSAIYK-VNNNRGNSLTLIDLPGHES-----------LR 68 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-----CCSCEEEEEE-CSSTTCCEEEEEECCCCHH-----------HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC-----CcceeeEEEE-ecCCCccEEEEEECCCChh-----------HH
Confidence 45899999999999999999999766422221 1112222222 34 56799999999542 22
Q ss_pred H-HHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHh----CcCccCcEEEEEeCCCCCCc
Q 023779 95 K-CLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLF----GKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 95 ~-~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~~ivv~nk~D~~~~ 152 (277)
. ....++.++|++++|+|++ .+.........++...+ ......|++||+||+|....
T Consensus 69 ~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 69 FQLLDRFKSSARAVVFVVDSA-AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHHGGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHHhhCCEEEEEEECC-CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 2 2333467889999999998 43222233333333321 11222499999999998765
No 60
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.77 E-value=3.2e-18 Score=135.65 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|+|||||+|+|++........ .+.+......... .++ ..+.||||||......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~---------- 72 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--STIGVDFKIKTVE-LDGKTVKLQIWDTAGQERFRT---------- 72 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--CSSCCCEEEEEEE-ETTEEEEEEEECCTTTTTTTC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEeCCChHHHHH----------
Confidence 345899999999999999999999876532221 2222222222222 344 3689999999654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|++||+||+|.........+. ...+.
T Consensus 73 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 140 (206)
T 2bcg_Y 73 -ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDV---------AKEFA 140 (206)
T ss_dssp -CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHH---------HHHHH
T ss_pred -HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHH
Confidence 12335678899999999984322222 23344444443332 4899999999986531111111 23344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.|...+..
T Consensus 141 ~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 141 DANKMPFL------ETSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HHTTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 44454444 45777889999999999887754
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.77 E-value=6.9e-18 Score=130.17 Aligned_cols=164 Identities=18% Similarity=0.079 Sum_probs=99.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+++|++|+|||||+|+|++........ .+.+........ ..++ ..+.+|||||... +.
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~i~Dt~G~~~-----------~~ 70 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDL-EVDGHFVTMQIWDTAGQER-----------FR 70 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEE-EETTEEEEEEEEECCCCGG-----------GH
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEE-EECCEEEEEEEEeCCCchh-----------hh
Confidence 345899999999999999999999766422211 111222212222 2344 3689999999442 23
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
.....++..+|++++|+|++.+.+... ..++..+...... ....|+++|+||+|..... ...++ ...
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~ 140 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQA 140 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHH
Confidence 344556788999999999983322222 3344444444321 1224999999999976331 11211 223
Q ss_pred HHh-hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+.. ..+..++ ..|++.+.++.++++.+.+.+..
T Consensus 141 ~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 141 WCRDNGDYPYF------ETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHHTTCCCEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 333 2223333 46788889999999999887654
No 62
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.5e-18 Score=131.82 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=96.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|+|++...........+.+.. ......+ ..+.+|||||.... ......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~~~~Dt~G~~~~-------~~~~~~- 70 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR----QVISCDKSICTLQITDTTGSHQF-------PAMQRL- 70 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE----EEEEETTEEEEEEEEECCSCSSC-------HHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE----EEEEECCEEEEEEEEECCCchhh-------HHHHHH-
Confidence 489999999999999999999987643222221222211 1112233 35889999997642 111122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
++..+|++++|+|++.+.+... ..++..+....+.....|+++|+||+|.... ..+... ....+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~--~~v~~~-------~~~~~~~~ 138 (172)
T 2erx_A 71 ---SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSS-------EAEALART 138 (172)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHH-------HHHHHHHH
T ss_pred ---hcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc--cccCHH-------HHHHHHHH
Confidence 2334699999999983322222 3444555554432223499999999997643 111110 02223333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.++++.|.+.+..
T Consensus 139 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 139 WKCAFM------ETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp HTCEEE------ECBTTTTBSHHHHHHHHHHTCCS
T ss_pred hCCeEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence 444443 45778889999999999876543
No 63
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=135.65 Aligned_cols=163 Identities=18% Similarity=0.112 Sum_probs=97.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe-eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
...+|+|+|++|+|||||+|+|++........ ............. ......+.+|||||...... .
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~ 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRA-----------I 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCT-----------T
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhh-----------h
Confidence 45899999999999999999999876532221 1112222111111 11234689999999865321 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+.+... ..++..+...... ..|+++|+||+|........... ...+...
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 159 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTEE---------ARMFAEN 159 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHHH---------HHHHHHH
Confidence 1223467799999999983222111 2333333332222 24899999999976431111111 3334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.++++.|.+.+..
T Consensus 160 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 160 NGLLFL------ETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 455444 35777889999999998776643
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=1.4e-17 Score=126.94 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|++++........ .|............+. .+.+|||||.... ......
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~- 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD----PTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDL- 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC----CCcceeEEEEEEECCEEEEEEEEECCCchhh-------HHHHHH-
Confidence 4799999999999999999999766432211 1211111112223443 4889999996542 111112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
++..+|++++|+|+..+.+... ..++..+..... ....|+++|+||+|........... ...+...
T Consensus 71 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1kao_A 71 ---YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREVSSSE---------GRALAEE 137 (167)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred ---HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccCCHHH---------HHHHHHH
Confidence 2345599999999983222222 233333443322 1234999999999975431011111 2333344
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|++.+.++.++++.|.+.+.+
T Consensus 138 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGCPFM------ETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HTSCEE------EECTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEE------EecCCCCcCHHHHHHHHHHHHhh
Confidence 444444 45788899999999999887643
No 65
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=128.42 Aligned_cols=164 Identities=21% Similarity=0.186 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|||||||+|+|++........ ..+.+.... .. ..++. .+.+|||||.... +...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~~~~~D~~g~~~~---------~~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYER--TL-TVDGEDTTLVVVDTWEAEKL---------DKSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEE--EE-EETTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEE--EE-EECCEEEEEEEEecCCCCcc---------chhh
Confidence 45899999999999999999999876532221 222222221 12 23443 5889999996541 0111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 22335678899999999983322222 233333433211 1124999999999986541111111 222333
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.++.++++.|.+.+..
T Consensus 140 ~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 140 VFDCKFI------ETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp HHTSEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 3344443 46888889999999999877643
No 66
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.76 E-value=4.2e-18 Score=134.37 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=97.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC----------------------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---------------------------- 68 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------------------------- 68 (277)
++..+|+|+|++|+|||||+|+|++........ ............. ..+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVN-LNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEE-TTC----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEE-ecCcccccccccccccccccccccccccccc
Confidence 355899999999999999999999876532211 1111111111111 222
Q ss_pred -----------ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCc
Q 023779 69 -----------QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNV 136 (277)
Q Consensus 69 -----------~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~ 136 (277)
..+.||||||...... ....++..+|++++|+|++.+.+..+ ..++..+....+
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred ccccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 5789999999543211 12223467799999999984322222 233444444333
Q ss_pred cCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 137 FDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 137 ~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.|+++|+||+| ........++ +..+....+..++ ..|++.+.++.++++.|.+.+..
T Consensus 148 -~piilv~NK~D-~~~~~~~~~~---------~~~~~~~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 -YIIILVANKID-KNKFQVDILE---------VQKYAQDNNLLFI------QTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CEEEEEEECTT-CC-CCSCHHH---------HHHHHHHTTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred -CcEEEEEECCC-cccccCCHHH---------HHHHHHHcCCcEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 49999999999 4221122222 3445555555544 45777889999999999887654
No 67
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=2e-17 Score=130.78 Aligned_cols=165 Identities=20% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+..+..+|+|+|++|||||||+|+|++..+.... ..|...........++. .+.||||||.... ...
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~ 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAI 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEcCCChhhh-------HHH
Confidence 4445689999999999999999999976642221 12222222222224443 6889999996642 111
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
. ..++..+|++++|+|++...+... ..++..+..... ....|++||+||+|.........++ ...
T Consensus 79 ~----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~ 144 (206)
T 2bov_A 79 R----DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKN 144 (206)
T ss_dssp H----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHH
T ss_pred H----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHH
Confidence 1 122345699999999983222222 233444444332 1124999999999976531112221 333
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+....+..++ ..|++.+.+++++++.|.+.+..
T Consensus 145 ~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 145 RAEQWNVNYV------ETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHHHTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4444454444 45777788999999998887643
No 68
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=2.6e-18 Score=136.73 Aligned_cols=164 Identities=15% Similarity=0.160 Sum_probs=98.7
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+.+...+|+|+|++|+|||||+|+|++........ .+.+......... .++ ..+.||||||......
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~-------- 84 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--TTIGIDFKIKTVD-INGKKVKLQLWDTAGQERFRT-------- 84 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--CCCSCCEEEEEEE-ETTEEEEEEEECCTTGGGGTC--------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHHH--------
Confidence 34556899999999999999999999766432221 2222222222222 455 4689999999543211
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.... ....+. ...
T Consensus 85 ---~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~--~~~~~~--------~~~ 149 (213)
T 3cph_A 85 ---ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETR--VVTADQ--------GEA 149 (213)
T ss_dssp ---CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSC--CSCHHH--------HHH
T ss_pred ---HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--ccCHHH--------HHH
Confidence 11223467799999999983222222 34445555544333 399999999997433 111111 223
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+....+..++ ..|++.+.++.++++.|...+..
T Consensus 150 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 150 LAKELGIPFI------ESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHHTCCEE------ECBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3344444443 45777888999999998877654
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=7.3e-18 Score=131.36 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|||||||+|+|++....... ..|...........++.. +.+|||||...... ....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~- 71 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQ- 71 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC----CTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHH-
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHH-
Confidence 489999999999999999999976642221 122222222222345544 77899999664321 1111
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.... ....+. ...+...
T Consensus 72 ---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~--~~~~~~--------~~~~~~~ 137 (189)
T 4dsu_A 72 ---YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSR--TVDTKQ--------AQDLARS 137 (189)
T ss_dssp ---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSC--SSCHHH--------HHHHHHH
T ss_pred ---HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCccc--ccCHHH--------HHHHHHH
Confidence 2234699999999983322222 233344444322 223499999999998654 222222 2334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+..++ ..|+..+.++.++++.|.+.+..
T Consensus 138 ~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 138 YGIPFI------ETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 454444 45778889999999999887754
No 70
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=2.7e-17 Score=127.16 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+.....+|+++|++|+|||||+|+|++...... ...|+..........++ ..+.+|||||.......
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------- 73 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAM------- 73 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCC-------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHH-------
Confidence 445668999999999999999999997754221 12232222222233454 36889999997653221
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLF-GKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~-~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
...+ +..+|++++|+|++.+.+... ..++..+.... ... .|+++|+||+|.... ..+... ...
T Consensus 74 ~~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~v~~~-------~~~ 138 (181)
T 2fn4_A 74 REQY----MRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQ--RQVPRS-------EAS 138 (181)
T ss_dssp HHHH----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGG--CCSCHH-------HHH
T ss_pred HHHH----HhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccc--cccCHH-------HHH
Confidence 1122 234599999999983222222 23333332222 222 499999999997643 111100 022
Q ss_pred HHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 171 EILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.+....+..++ ..|++.+.++.++++.|.+.+...
T Consensus 139 ~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 139 AFGASHHVAYF------EASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHTTCEEE------ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEE------EecCCCCCCHHHHHHHHHHHHHHh
Confidence 33344444444 457788899999999998877553
No 71
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=1.5e-17 Score=140.53 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCC---cceee---------------------------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSG---VTKTC--------------------------------- 58 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~---~~~---~t~~~--------------------------------- 58 (277)
...+|+|+|++|+|||||+|+|+|...++.+.. ..+ .++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 447899999999999999999999876444321 111 01110
Q ss_pred ------------------EEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCC-CCC
Q 023779 59 ------------------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-NRF 117 (277)
Q Consensus 59 ------------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-~~~ 117 (277)
....+....+..+.||||||+..... ....+...+......++..+|++++|+|.. ..+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 00001112346799999999975221 111223344444555566789999999974 444
Q ss_pred CHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccC---
Q 023779 118 SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKG--- 193 (277)
Q Consensus 118 ~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--- 193 (277)
...+ ..++.++.. . ..|+++|+||+|..... ..+.+.+.. .+..++..++.+... ++..
T Consensus 183 ~~~~~~~i~~~~~~-~----~~~~i~v~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~v~~~---sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-E----GKRTIGVITKLDLMDKG-TDAMEVLTG--------RVIPLTLGFIGVINR---SQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-S----CSSEEEEEECTTSSCSS-CCCHHHHTT--------SSSCCTTCEEECCCC---CHHHHSS
T ss_pred hhhHHHHHHHHhCC-C----CCcEEEEEcCcccCCcc-hHHHHHHhC--------CCccCCCCeEEEecC---Chhhhcc
Confidence 4333 344444433 1 23999999999987551 112222221 001112344443333 4444
Q ss_pred hhHHHHHHHHHHHHHhh
Q 023779 194 TEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 194 ~~~~~~L~~~i~~~~~~ 210 (277)
+.++.++++.+..+++.
T Consensus 246 ~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKN 262 (315)
T ss_dssp SCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 57889999999999876
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=5e-18 Score=134.13 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|||||||+|+|++..+.... ..+.+......... .++ ..+.+|||||.. .+..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~ 90 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVE-INGEKVKLQIWDTAGQE-----------RFRS 90 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSG-----------GGHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEE-ECCEEEEEEEEECCCcH-----------HHHH
Confidence 4579999999999999999999976642211 11222222222222 444 368899999943 2334
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|+++|+||+|.........++ ...+..
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 159 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQR---------AEEFSE 159 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHH---------HHHHHH
Confidence 45566789999999999983322211 34445555443333 3899999999976431011111 223333
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ++|++.+.++.++++.|.+.+..
T Consensus 160 ~~~~~~~------~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 160 AQDMYYL------ETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 3444443 46788889999999998876643
No 73
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.76 E-value=2.9e-18 Score=133.15 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=78.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|+|||||+|++++....... ..+.+........ ..++ ..+.+|||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTF--ISTIGIDFKIRTI-ELDGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------CH--HHHHCEEEEEEEE-EETTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCcccceeEEEEE-EECCEEEEEEEEcCCCChh-----------hhh
Confidence 4589999999999999999999976542111 0111112222222 2455 5689999999542 223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+......+ .|++||+||+|.........++ ...+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKER---------GEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHH---------HHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHH---------HHHHHH
Confidence 33456788999999999984322222 23444444433333 3999999999976531111111 333444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.++.++++.|...+..
T Consensus 142 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 142 DYGIKFM------ETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp HHTCEEE------ECCC---CCHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4454444 45778888999999998776643
No 74
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=2.2e-17 Score=128.96 Aligned_cols=162 Identities=19% Similarity=0.168 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+++|.+|||||||+|+|++....... ..|...........++. .+.+|||||... +..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVIDGETCLLDILDTAGQEE-----------YSA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcccc----CCccceEEEEEEEECCEEEEEEEEECCChHH-----------HHH
Confidence 4579999999999999999999976542211 11222222222224443 488999999543 223
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|+....+..+ ..++..+..... ....|++||+||+|..... ...++ ...+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRT-VDTKQ---------AHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCC-SCHHH---------HHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCccc-CCHHH---------HHHHHH
Confidence 33445678899999999983322222 233444444332 1124999999999976531 11111 333444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
..+..++ ..|+..+.++.++++.|.+.+...
T Consensus 154 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 154 SYGIPFI------ETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHTCCEE------ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHHHH
Confidence 4454443 457778899999999998877653
No 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.76 E-value=1.2e-17 Score=127.33 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=95.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+++|++|+|||||+|+|++....... ..|...........++ ..+.+|||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC----CCCcceEEEEEEEECCEEEEEEEEECCCcchh-----------HH
Confidence 4589999999999999999999976642221 1122221221122344 36889999995531 11
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+...... ...|+++|+||+|.........++ ...+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHHH---------HHHHHH
Confidence 12223345699999999983322222 2334444444331 124999999999976431111211 233444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ..|++.+.++.++++.+.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYV------ETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEE------EeCCCCCCCHHHHHHHHHHHHH
Confidence 4454444 4577788999999999987764
No 76
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.76 E-value=1.4e-17 Score=129.53 Aligned_cols=163 Identities=20% Similarity=0.166 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+..+|+|+|++|+|||||+|+|++....... ..|............+ ..+.+|||||.... .....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY----EPTKADSYRKKVVLDGEEVQIDILDTAGQEDY-------AAIRD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC----CCccceEEEEEEEECCEEEEEEEEECCCCccc-------HHHHH
Confidence 35689999999999999999999976642221 1122222222222444 36889999996542 11112
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
. ++..+|++++|+|++...+... ..++..+...... ...|++||+||+|.........++ ...+.
T Consensus 85 ~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 150 (187)
T 2a9k_A 85 N----YFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 150 (187)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred H----HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHH---------HHHHH
Confidence 2 2345699999999983222122 2334444444331 124999999999976431111111 33444
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.|.+.+..
T Consensus 151 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 151 EQWNVNYV------ETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHTTCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEE------EeCCCCCCCHHHHHHHHHHHHHH
Confidence 55555444 45777888999999999877643
No 77
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=131.48 Aligned_cols=173 Identities=17% Similarity=0.105 Sum_probs=98.0
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHH
Q 023779 12 PTSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFV 89 (277)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~ 89 (277)
...+.....+|+++|++|+|||||+|.+++... ... ...|+..........++. .+.+|||||......
T Consensus 13 ~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~-~~~---~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----- 83 (201)
T 2q3h_A 13 AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGY-PTE---YIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDK----- 83 (201)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSS-----
T ss_pred cCCCCCcceEEEEECCCCCCHHHHHHHHHhCCC-CCC---CCCcccceeEEEEEECCEEEEEEEEECCCCHHHHH-----
Confidence 344456679999999999999999999998763 222 122222222222234554 567999999765321
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----
Q 023779 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---- 163 (277)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---- 163 (277)
....++.++|++++|+|++.+.+..+. .++..+..... ..|++||+||+|.... ......+..
T Consensus 84 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~ 152 (201)
T 2q3h_A 84 ------LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED--VKVLIELDKCKEK 152 (201)
T ss_dssp ------SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC--HHHHHHHHTTTCC
T ss_pred ------HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc--hhhhhhhcccccc
Confidence 122356788999999999843322222 34444555432 2499999999997653 111111100
Q ss_pred cC-CchHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 164 EC-PKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 164 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ......+....+. .++ .+|++.+.++.++++.|...+..
T Consensus 153 ~v~~~~~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 153 PVPEEAAKLLAEEIKAASYI------ECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CCCHHHHHHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCcEEE------EEecCCCCCHHHHHHHHHHHHhc
Confidence 00 0113334444443 333 46888889999999998877644
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=6.3e-19 Score=140.95 Aligned_cols=166 Identities=17% Similarity=0.159 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|.+|||||||+|+|++...........+.+ ..........+ ..+.+|||||.......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 77 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------- 77 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence 355899999999999999999999766432211111111 11111121222 46899999996543211
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
...++..+|++++|+|++.+.+..+ ..++..+......+ .|+++|+||+|.... ..+... ....+.
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~~-------~~~~~~ 144 (218)
T 4djt_A 78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR--QKISKK-------LVMEVL 144 (218)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC------CCHH-------HHHHHT
T ss_pred --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc--cccCHH-------HHHHHH
Confidence 1112456799999999984433222 34445555555443 399999999997643 111100 022233
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
...+..++ ..|++.+.++.++++.|.+.+....
T Consensus 145 ~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 145 KGKNYEYF------EISAKTAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTCCCEEE------EEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred HHcCCcEE------EEecCCCCCHHHHHHHHHHHHhccc
Confidence 33344444 4577888999999999999887644
No 79
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=4.5e-18 Score=133.81 Aligned_cols=163 Identities=19% Similarity=0.181 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|||||||+|+|++...........+.+ .......++ ..+.+|||||.... ....
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~-- 73 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT----YRQVISCDKSVCTLQITDTTGSHQF-------PAMQ-- 73 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE----EEEEEEETTEEEEEEEEECCGGGSC-------HHHH--
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc----eeEEEEECCEEEEEEEEeCCChHHh-------HHHH--
Confidence 45899999999999999999999766432221111111 111122333 36889999996542 1111
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
..++..+|++++|+|++.+.+... ..++..+....+.....|+++|+||+|..... ..... ...+..
T Consensus 74 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~ 141 (199)
T 2gf0_A 74 --RLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ 141 (199)
T ss_dssp --HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred --HHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence 122345699999999983222222 23455555544322234999999999976531 11111 223334
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
..+..++ ..|+..+.++.+|++.|...+...
T Consensus 142 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 142 EWKCAFM------ETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp HHTCEEE------ECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred HhCCeEE------EEecCCCCCHHHHHHHHHHHHhhh
Confidence 4454444 457788899999999999887654
No 80
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=132.96 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|||||||+|+|++........ .+.+......... .++ ..+.||||||.. .+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~l~l~Dt~G~~-----------~~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVN-VGGKTVKLQIWDTAGQE-----------RFRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEE-ETTEEEEEEEECCTTHH-----------HHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEE-ECCeeeEEEEEcCCCcH-----------hHHH
Confidence 45899999999999999999999876532211 1222222222222 344 578999999932 1222
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|++||+||+|..........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 22234567899999999983322222 23344444433333 3999999999975431111111 233444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.++.++++.|.+.+..
T Consensus 159 ~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 159 ENELMFL------ETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp HTTCEEE------EECTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 4454444 35777889999999998876643
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.75 E-value=2.7e-18 Score=131.18 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=96.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|+|||||+|+|++........ .+.+......... .++ ..+.+|||||......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~----------- 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQ-VNDEDVRLMLWDTAGQEEFDA----------- 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEE-ETTEEEEEEEECCTTGGGTTC-----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEE-ECCEEEEEEEEcCCCcHhHHH-----------
Confidence 45899999999999999999999766422211 1112222222222 333 3689999999543211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+..... . .|+++|+||+|.........++ ...+..
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 137 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNEE---------AEGLAK 137 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 11123457799999999983222221 234444444332 2 3999999999976431011111 333444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ..|++.+.++.++++.|.+.+.
T Consensus 138 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 138 RLKLRFY------RTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHTCEEE------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCeEE------EEecCCCCCHHHHHHHHHHHHh
Confidence 4455444 4577788899999999887653
No 82
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.75 E-value=6.2e-18 Score=132.98 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=96.5
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
..+..+..+|+++|.+|||||||+|.+++....... .....+...............+.+|||||........+.
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---- 88 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET-LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD---- 88 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGGGG-GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC----
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce-eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh----
Confidence 345557799999999999999999999885432211 111111111111111123467999999997653221100
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccH----HHHhcccCCch
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTL----EDFLGHECPKP 168 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l----~~~l~~~~~~~ 168 (277)
... ++.++|++++|+|++.++......+..++..........|++||+||+|.... ... ...... .
T Consensus 89 ~~~----~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~v~~~----~ 158 (196)
T 3llu_A 89 YEM----IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD--DHKIETQRDIHQR----A 158 (196)
T ss_dssp HHH----HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHHHHHHH----H
T ss_pred ccc----ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch--hhhhHHHhHHHHH----H
Confidence 012 23457999999999955334445555666664211222499999999997653 111 111111 0
Q ss_pred HHHHHh----hcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 169 LKEILQ----LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 169 ~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
...+.. ..+..++ ++|++. .++.+++..+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence 122333 2222332 568888 9999999988664
No 83
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.75 E-value=1.4e-17 Score=127.25 Aligned_cols=161 Identities=16% Similarity=0.226 Sum_probs=96.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+++|++|+|||||+|+|++....... . .+.|........ .+++..+.+|||||........ ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~-~-~~~t~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN-W-PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEE-EETTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC-C-CCcceeeeEEEE-EECCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 378999999999999999999987643221 1 122332222222 2567889999999987643221 1112222211
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
. ..++|++++|+|++ ... ....++..+.+ .+ .|+++|+||+|.... ..+ . .....+....+.
T Consensus 78 ~-~~~~~~~i~v~D~~-~~~-~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~~----~----~~~~~~~~~~~~ 139 (165)
T 2wji_A 78 I-NEKPDLVVNIVDAT-ALE-RNLYLTLQLME---MG--ANLLLALNKMDLAKS--LGI----E----IDVDKLEKILGV 139 (165)
T ss_dssp H-HHCCSEEEEEEETT-CHH-HHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TTC----C----CCHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chh-HhHHHHHHHHh---cC--CCEEEEEEchHhccc--cCh----h----hHHHHHHHHhCC
Confidence 1 12679999999998 321 12223333333 12 399999999996432 111 0 013334444454
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
.++ +.||+.+.+++++++.+.+.+
T Consensus 140 ~~~------~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 140 KVV------PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CEE------ECBGGGTBSHHHHHHHHHHHT
T ss_pred CEE------EEEcCCCCCHHHHHHHHHHHh
Confidence 443 468889999999999987654
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.8e-17 Score=129.18 Aligned_cols=161 Identities=15% Similarity=0.080 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|+|++........ |........ .+++..+.+|||||..... ..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 76 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSP-----TIGSNVEEI-VINNTRFLMWDIGGQESLR-----------SS 76 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEEC-----CSCSSCEEE-EETTEEEEEEECCC----C-----------GG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcC-----CCccceEEE-EECCEEEEEEECCCCHhHH-----------HH
Confidence 345899999999999999999999766532211 111112222 2567889999999975421 11
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.... ...++... .+..
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~---------~~~~ 144 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC--MTVAEISQ---------FLKL 144 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC--CCHHHHHH---------HHTG
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC--CCHHHHHH---------HhCh
Confidence 1223467899999999984433333 222222222110 122499999999998654 22222211 1111
Q ss_pred --cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 --CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 --~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ..+.. ...|++.+.+++++++.|.+.+..
T Consensus 145 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 145 TSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp GGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC
T ss_pred hhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHH
Confidence 11 11111 256888889999999999988754
No 85
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.74 E-value=1.2e-17 Score=129.71 Aligned_cols=165 Identities=22% Similarity=0.155 Sum_probs=98.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+..+..+|+|+|++|+|||||+|+|++....... ..|...........++.. +.+|||||...... .
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~ 82 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------M 82 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------S
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------H
Confidence 3446689999999999999999999976542221 222222223233345544 56799999653221 1
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
... ++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++ ...
T Consensus 83 ~~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~---------~~~ 148 (183)
T 3kkq_A 83 REQ----YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKVTRDQ---------GKE 148 (183)
T ss_dssp HHH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCSCHHH---------HHH
T ss_pred HHH----HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCcCHHH---------HHH
Confidence 112 2334699999999983322211 233333433222 1224899999999976531111111 333
Q ss_pred HHhhcCCeEEEEeCCCccccc-ChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~~~ 210 (277)
+....+..++ ..|++ .+.+++++++.|.+.+.+
T Consensus 149 ~~~~~~~~~~------~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 149 MATKYNIPYI------ETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHTCCEE------EEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEE------EeccCCCCCCHHHHHHHHHHHHhh
Confidence 4445555554 35677 778999999999887653
No 86
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=7.9e-18 Score=133.27 Aligned_cols=166 Identities=18% Similarity=0.082 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+..+|+++|.+|||||||++++++....... ..|+..........++.. +.+|||||... +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY----IPTVFDNYSANVMVDGKPVNLGLWDTAGLED-----------YD 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C----CCCSEEEEEEEEECC-CEEEEEEEEECCSGG-----------GT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc----CCeecceeEEEEEECCEEEEEEEEECCCchh-----------hH
Confidence 45689999999999999999999965542211 122222222222344444 55999999643 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK 167 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~ 167 (277)
.....++..+|++++|+|++.+.+..+. .++..+.... .+ .|+++|+||+|.... ....+.+... ...
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PN--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SS--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence 2334467889999999999843333332 3445555543 22 499999999997755 2222211110 001
Q ss_pred hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
....+....+...+. +.|++.+.|++++++.|.+.
T Consensus 168 ~~~~~~~~~~~~~~~-----~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYL-----ECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCSEEE-----ECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEE-----EeeCCCCCCHHHHHHHHHHH
Confidence 123344444433222 56888889999999988764
No 87
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.74 E-value=2.2e-18 Score=152.67 Aligned_cols=163 Identities=18% Similarity=0.128 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|+|.+|||||||+|+|+|...... ....+.|........ .+.+..+.+|||||+... ...+..++....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~-~~~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSA-EWLNYDFNLIDTGGIDIG---DEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEEC-TTCSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEE-EECCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence 457999999999999999999998764211 122344444444433 367788999999998742 222345555555
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
..++..+|++|+|+|+..+++..+..+.+++... + .|+++|+||+|.... . ..... +.. ..++
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-~----~pvilV~NK~D~~~~--~---~~~~e-----~~~--lg~~ 159 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-K----KPVVLAVNKLDNTEM--R---ANIYD-----FYS--LGFG 159 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-C----SCEEEEEECC--------------CC-----SGG--GSSS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-C----CCEEEEEECccchhh--h---hhHHH-----HHH--cCCC
Confidence 5566778999999999878888888877777652 2 399999999996533 1 11111 100 1112
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+ ..|+..+.++.+|++.+...++
T Consensus 160 ~~~-------~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 160 EPY-------PISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp SEE-------ECCTTTCTTHHHHHHHHHTTGG
T ss_pred ceE-------EeecccccchHHHHHHHHhhcc
Confidence 222 4577888899999998877665
No 88
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.74 E-value=2.2e-18 Score=133.06 Aligned_cols=161 Identities=16% Similarity=0.126 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+|+|++|+|||||+|+|++....... ..+.+......... .++ ..+.+|||||..... .
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~-----------~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTY--QATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFR-----------S 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGG-----------G
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHH-----------H
Confidence 3489999999999999999999976643221 12222222222222 344 368999999954311 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+....+.. .|+++|+||+|..........+ ...+..
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 147 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAK 147 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHH
Confidence 11122346799999999983222121 33444444443333 3899999999976431111111 223334
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++ ..|++.+.+++++++.|...+.
T Consensus 148 ~~~~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 148 ELNVMFI------ETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHTCC
T ss_pred HcCCeEE------EEeCCCCCCHHHHHHHHHHHHh
Confidence 4454444 3577788899999999877653
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.74 E-value=2.4e-17 Score=128.76 Aligned_cols=163 Identities=14% Similarity=0.099 Sum_probs=100.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|+|||||+|++++....... +|........ ...+..+.+|||||...... .
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~-----------~ 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETL-QYKNISFEVWDLGGQTGVRP-----------Y 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEE-EETTEEEEEEEECCSSSSCC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence 35589999999999999999999876643221 1222222222 25678899999999764321 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+-+... ...++...... ....|+++|+||+|.... ...++.... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence 2235678899999999984433332 12233333221 122499999999998654 333322221 00 01
Q ss_pred hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
.... .+. ..++|++.+.+++++++.|.+.+...
T Consensus 152 ~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 152 SIMNRTWT----IVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp GCCSSCEE----EEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred hccCCceE----EEEccCCCccCHHHHHHHHHHHHHhc
Confidence 1111 111 12567888899999999998887653
No 90
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.74 E-value=2e-17 Score=130.63 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+++|++|+|||||+|++++........ .+.+.... .. ...++ ..+.+|||||.... .
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~-~~-~~~~~~~~~l~i~Dt~G~~~~-----------~ 87 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYI-AD-IEVDGKQVELALWDTAGQEDY-----------D 87 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--CSSCCCCE-EE-EEETTEEEEEEEECCCCSGGG-----------T
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--CcccceEE-EE-EEECCEEEEEEEEECCCchhH-----------H
Confidence 345799999999999999999999766532211 11111111 11 22344 36889999995431 2
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PK 167 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~ 167 (277)
.....++..+|++++|+|++.+.+... ..++..+..... . .|+++|+||+|.... ....+.+.. .. ..
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 162 (201)
T 2gco_A 88 RLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVRSE 162 (201)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCCHH
T ss_pred HHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCCHH
Confidence 222345678899999999983222222 244455555332 2 399999999998765 222222211 00 01
Q ss_pred hHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 168 PLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 168 ~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
....+....+. .++ ..|++.+.++.+|++.|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 163 EGRDMANRISAFGYL------ECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEE------EeeCCCCCCHHHHHHHHHHHH
Confidence 13344444454 333 467888899999999987765
No 91
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=6.9e-18 Score=133.62 Aligned_cols=162 Identities=14% Similarity=0.061 Sum_probs=73.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC--CCccccCCCCCccee--eEEEEEeeeC----CceEEEEeCCCCCCCCCCchH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR--KAFKASAGSSGVTKT--CEMKTTVLKD----GQVVNVIDTPGLFDLSAGSEF 88 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~--~~~~~~~~~~----~~~~~liDtpG~~~~~~~~~~ 88 (277)
....+|+|+|++|+|||||+|+|++. .+. .. ...|+. ....... .+ ...+.+|||||..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~~~~l~Dt~G~~-------- 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFL-KD---YAMTSGVEVVVAPVT-IPDTTVSVELFLLDTAGSD-------- 84 (208)
T ss_dssp EEEEEEEEC--------------------------------------CEEEE-CTTSSEEEEEEEEETTTTH--------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCccc-CC---CCCccceEEEEEEEE-ECCcccEEEEEEEECCCcH--------
Confidence 34579999999999999999999977 331 11 122222 2222222 34 3468999999953
Q ss_pred HHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCC-cccccHHHHhcccC
Q 023779 89 VGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLE-DHEKTLEDFLGHEC 165 (277)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~-~~~~~l~~~l~~~~ 165 (277)
.+......++..+|++++|+|++.+.+... ..++..+...... ....|++||+||+|... ......+
T Consensus 85 ---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~------- 154 (208)
T 2yc2_C 85 ---LYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD------- 154 (208)
T ss_dssp ---HHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH-------
T ss_pred ---HHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH-------
Confidence 344455667789999999999984332222 3444445444320 01249999999999765 2101111
Q ss_pred CchHHHHHhhcCCeEEEEeCCCcccccC-hhHHHHHHHHHHHHHh
Q 023779 166 PKPLKEILQLCDNRCVLFDNKTKDEAKG-TEQVRQLLSLVNSVIV 209 (277)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~L~~~i~~~~~ 209 (277)
....+....+..++ ..|++. +.++.++++.|.+.+.
T Consensus 155 --~~~~~~~~~~~~~~------~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 --MAQDWATTNTLDFF------DVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp --HHHHHHHHTTCEEE------ECCC-------CHHHHHHHHHHH
T ss_pred --HHHHHHHHcCCEEE------EeccCCCCcCHHHHHHHHHHHHH
Confidence 13445555554444 457778 8899999999887664
No 92
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.74 E-value=9.2e-18 Score=132.91 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=98.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|++|+|||||+|+|++....... ..+.+......... .++ ..+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVM-VDDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSC--CCCCSEEEEEEEEE-SSSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEE-ECCEEEEEEEEeCCCcHHHH-----------
Confidence 35589999999999999999999987653221 12222222222222 333 468999999954321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
.....++..+|++++|+|++.+.+... ..++..+...... ....|+++|+||+|.... ....+. ...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR--QVATKR--------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC--CSCHHH--------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc--ccCHHH--------HHH
Confidence 112334678899999999983322222 2333444443321 012499999999997643 111111 222
Q ss_pred HHh-hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQ-LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~-~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+.. ..+..++ ..|++.+.++.++++.|.+.+..
T Consensus 142 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 142 WCYSKNNIPYF------ETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHTTSCCEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 333 2233333 46788889999999999887654
No 93
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=129.45 Aligned_cols=170 Identities=21% Similarity=0.162 Sum_probs=97.0
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHH
Q 023779 13 TSPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVG 90 (277)
Q Consensus 13 ~~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~ 90 (277)
+.+.....+|+|+|++|||||||+|.+++.......... .+....... ...++. .+.+|||||.... .
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~i~Dt~g~~~~----~--- 86 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPE--NPEDTYERR-IMVDKEEVTLVVYDIWEQGDA----G--- 86 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTT--SCTTEEEEE-EEETTEEEEEEEECCCCCSGG----G---
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCC--cccceEEEE-EEECCEEEEEEEEecCCCccc----h---
Confidence 334456689999999999999999999864431111111 111111111 224444 4778999996531 0
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (277)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~ 169 (277)
..+.. .++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++ .
T Consensus 87 ~~~~~---~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~---------~ 153 (195)
T 3cbq_A 87 GWLRD---HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------G 153 (195)
T ss_dssp HHHHH---HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCSCHHH---------H
T ss_pred hhhHH---HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCcCHHH---------H
Confidence 11211 22345699999999983322221 233333443321 1124999999999976431112221 2
Q ss_pred HHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
..+....+..++ ++|++.+.+++++++.|.+.+...
T Consensus 154 ~~~a~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 154 RHLAGTLSCKHI------ETSAALHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHTTCEEE------EEBTTTTBSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCEEE------EEcCCCCCCHHHHHHHHHHHHHHh
Confidence 334444444443 567888899999999998877653
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.74 E-value=1.5e-17 Score=129.10 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=95.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|++|||||||+|.|++...... .+|........ .+++..+.+|||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSV-QSQGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEE-EETTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEE-EECCEEEEEEECCCCHH-----------HHHH
Confidence 4568999999999999999999998753211 11211222222 35678899999999542 1222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+-+... ...++...... ....|+++|+||+|.... ...++.... +. +.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~ 145 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEG-----LN--LH 145 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHHHH-----hC--ch
Confidence 3334567899999999984333222 11233332211 122499999999998654 333222111 00 00
Q ss_pred hcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.... .+.. .++||+.+.++.++++.|.+.+.
T Consensus 146 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 146 TIRDRVWQI----QSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GCCSSCEEE----EECCTTTCTTHHHHHHHHHHTC-
T ss_pred hccCCceEE----EEccCCCCCCHHHHHHHHHHHHH
Confidence 1111 1111 25688889999999999877653
No 95
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=130.01 Aligned_cols=165 Identities=19% Similarity=0.089 Sum_probs=95.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~ 91 (277)
.......+|+|+|++|||||||+|.+++..+. .. ...|....+......++ ..+.+|||||......
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------- 84 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN------- 84 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-------
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEECCEEEEEEEEECCCCCcchh-------
Confidence 33346689999999999999999999976642 11 12222222221222343 3578999999654321
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCc-CccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGK-NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~ 169 (277)
+. .++..+|++++|+|++.+-+... ..++..+...... ....|++||+||+|.........++ .
T Consensus 85 -~~----~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~ 150 (187)
T 3c5c_A 85 -CE----RYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAE---------G 150 (187)
T ss_dssp -TH----HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHH---------H
T ss_pred -HH----HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHH---------H
Confidence 11 13456799999999983322222 2344444443210 0123999999999975431011111 2
Q ss_pred HHHHhhcCCeEEEEeCCCcccc-cChhHHHHHHHHHHHHHh
Q 023779 170 KEILQLCDNRCVLFDNKTKDEA-KGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~s~-~~~~~~~~L~~~i~~~~~ 209 (277)
..+....+..++ .+|+ +.+.++.++++.|.+.+.
T Consensus 151 ~~~~~~~~~~~~------e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 151 VALAGRFGCLFF------EVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHHHTCEEE------ECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEE------EEeecCccccHHHHHHHHHHHHh
Confidence 334444454444 4677 788999999999887653
No 96
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=9.8e-18 Score=131.48 Aligned_cols=161 Identities=12% Similarity=0.095 Sum_probs=93.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|++++...... .+|........ ...+..+.+|||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEE-EECCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999987664321 12222222222 35678899999999754211 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+.+... ...++....... ...|++||+||+|.... ...+++... +. ..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~ 158 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQ 158 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 1123356799999999984322222 223333332211 12499999999997654 333322221 00 00
Q ss_pred hcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
... ..+.. .++|++.+.+++++++.|.+.+.
T Consensus 159 ~~~~~~~~~----~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYV----QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEE----EECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEE----EECcCCCcCCHHHHHHHHHHHHh
Confidence 111 11111 25688888999999999887653
No 97
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=2.4e-17 Score=131.54 Aligned_cols=169 Identities=11% Similarity=0.028 Sum_probs=101.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
.....+|+|+|.+|||||||+|.|++..+.... ..|...........+ ...+.+|||||... +
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~ 88 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPY-----------Y 88 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGG-----------G
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHh-----------H
Confidence 345689999999999999999999976642221 122222222111223 34688999999543 2
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHh-c----ccCC
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFL-G----HECP 166 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l-~----~~~~ 166 (277)
......++..+|++++|+|++.+.+... ..++..+..... + .|++||+||+|.... ......+ . .-..
T Consensus 89 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~ 163 (214)
T 3q3j_B 89 DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTD--LSTLMELSHQKQAPISY 163 (214)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGC--HHHHHHHHHTTCCCCCH
T ss_pred HHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--hhhhhhhcccccCccCH
Confidence 2233446788999999999984433333 345555655432 2 399999999997643 1100000 0 0000
Q ss_pred chHHHHHhhcCC-eEEEEeCCCcccccChhH-HHHHHHHHHHHHhh
Q 023779 167 KPLKEILQLCDN-RCVLFDNKTKDEAKGTEQ-VRQLLSLVNSVIVQ 210 (277)
Q Consensus 167 ~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~-~~~L~~~i~~~~~~ 210 (277)
.....+....+. .++ .+|++.+.+ +.++++.+...+..
T Consensus 164 ~~~~~~~~~~~~~~~~------e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 164 EQGCAIAKQLGAEIYL------EGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCEEE------EeccCCCcccHHHHHHHHHHHHhc
Confidence 113344455555 444 468888898 99999999887754
No 98
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.74 E-value=4.6e-17 Score=126.88 Aligned_cols=166 Identities=16% Similarity=0.223 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|||||||+|+|++...+.... .+.|........ ..++..+.+|||||........ ....+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~--~~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--PGVTVEKKEGEF-EYNGEKFKVVDLPGVYSLTANS--IDEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--TTSCCEEEEEEE-EETTEEEEEEECCCCSCCSSSS--HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--CCeeccceEEEE-EeCCcEEEEEECCCcCcccccc--HHHHHHHHH
Confidence 45899999999999999999999876433222 233333333333 3567889999999987653221 111222221
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
.. ...+|++++|+|.. .+. ....++....... .|+++|+||+|.... ..+. . ....+....+
T Consensus 81 ~~-~~~~~~~i~v~d~~-~~~----~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~---~-----~~~~~~~~~~ 142 (188)
T 2wjg_A 81 II-NEKPDLVVNIVDAT-ALE----RNLYLTLQLMEMG--ANLLLALNKMDLAKS--LGIE---I-----DVDKLEKILG 142 (188)
T ss_dssp HH-HHCCSEEEEEEEGG-GHH----HHHHHHHHHHTTT--CCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHT
T ss_pred Hh-ccCCCEEEEEecch-hHH----HHHHHHHHHHhcC--CCEEEEEEhhhcccc--ccch---H-----HHHHHHHHhC
Confidence 11 12469999999987 321 1223333332222 389999999996432 1110 1 1444555555
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
..++ ..|++.+.++.++++.+...+....
T Consensus 143 ~~~~------~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 143 VKVV------PLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp SCEE------ECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CCeE------EEEecCCCCHHHHHHHHHHHHHhcc
Confidence 5444 4678888999999999999887643
No 99
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.74 E-value=2.6e-18 Score=151.31 Aligned_cols=162 Identities=17% Similarity=0.109 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+|+|++|||||||+|+|+|...... ....+.|....... ..+.+..+.+|||||+.... ..+...+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~-~~~~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSS-AEWLNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEE-CTTCSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEE-EEECCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999998664211 12233444444333 34677889999999986422 1134455555555
Q ss_pred cCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCe
Q 023779 100 AKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNR 179 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 179 (277)
++..+|++++|+|+..+++..+..+..++.. ...|+++|+||+|.... . ..... +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~--~---~~~~~-----~~----~lg~- 138 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM--R---ANIYD-----FY----SLGF- 138 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC----------CCCS-----SG----GGSS-
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc--h---hhHHH-----HH----HcCC-
Confidence 5677899999999997888877766665553 12499999999997643 1 01111 11 1121
Q ss_pred EEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 180 CVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 180 ~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
......||..+.++.+|++.+...++.
T Consensus 139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ----GEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ----CCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ----CCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 123356888999999999999887763
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.3e-17 Score=129.32 Aligned_cols=160 Identities=17% Similarity=0.122 Sum_probs=96.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|++++........ |........ .+++..+.+|||||..... ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-----TIGFNVETL-SYKNLKLNVWDLGGQTSIR-----------PY 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-----STTCCEEEE-EETTEEEEEEEEC----CC-----------TT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-----cCccceEEE-EECCEEEEEEECCCCHhHH-----------HH
Confidence 456999999999999999999999766422211 111112222 2567889999999976422 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+.+... ...++...... ....|+++|+||+|.... ...++... .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~---------~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSK---------ELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHH---------HhC
Confidence 2345678899999999984433333 22333333321 123499999999997654 22222211 111
Q ss_pred hc--C-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LC--D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~--~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. . ..+. ....|++.+.+++++++.|.+.+..
T Consensus 146 ~~~~~~~~~~----~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 146 LVELKDRSWS----IVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTTCCSSCEE----EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred cccccCCceE----EEEccCCCCcCHHHHHHHHHHHHHh
Confidence 11 1 1111 1256888889999999999887654
No 101
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=6e-17 Score=133.51 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=100.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..+|+|+|++|||||||+|+|+|...+... . .+.|......... . +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~-~-pg~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN-W-PGVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS-S-SCCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC-C-CCCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 478999999999999999999987643222 2 2344433333222 2 67899999999886543221 122222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
. ...+|++++|+|++ ... ....+...+.+ .+ .|+++|+||+|.... ..+. . ....+....+.
T Consensus 77 ~-~~~~d~vi~V~D~t-~~e-~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~--~~~~---~-----~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 L-SQRADSILNVVDAT-NLE-RNLYLTTQLIE-TG----IPVTIALNMIDVLDG--QGKK---I-----NVDKLSYHLGV 138 (272)
T ss_dssp H-TTCCSEEEEEEEGG-GHH-HHHHHHHHHHH-TC----SCEEEEEECHHHHHH--TTCC---C-----CHHHHHHHHTS
T ss_pred h-cCCCCEEEEEecCC-chH-hHHHHHHHHHh-cC----CCEEEEEEChhhCCc--CCcH---H-----HHHHHHHHcCC
Confidence 1 24689999999998 321 11222233333 12 399999999996533 1110 1 13344444454
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.++ +.|++.+.|+++|++.|...+..
T Consensus 139 ~vi------~~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 PVV------ATSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHHHSCTT
T ss_pred CEE------EEEccCCCCHHHHHHHHHHHHhh
Confidence 444 46888899999999999887643
No 102
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=8.7e-18 Score=131.67 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+|+|++|+|||||+|+|++........ ...+......... .. ...+.||||||......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~----------- 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTIS-VDGNKAKLAIWDTAGQERFRT----------- 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEE-ETTEEEEEEEEEECSSGGGCC-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEE-ECCeEEEEEEEeCCCchhhhh-----------
Confidence 45899999999999999999999776432221 1112222222222 23 34689999999653211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|..... ..... ...+..
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~~---------~~~~~~ 148 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRNE---------GLKFAR 148 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHHH---------HHHHHH
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHHH---------HHHHHH
Confidence 11223467799999999983322221 223333333221 1234899999999975431 11111 233444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
..+..++ ..|++.+.+++++++.|.+.+..
T Consensus 149 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 149 KHSMLFI------EASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HTTCEEE------ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HcCCEEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 4454443 45777889999999999988765
No 103
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.74 E-value=2.8e-17 Score=144.84 Aligned_cols=176 Identities=20% Similarity=0.250 Sum_probs=104.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCc-hHH----HHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGS-EFV----GKE 92 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~----~~~ 92 (277)
...+|+|+|++|||||||+|+|+|...... +..+.|+.........+++..+.+|||||+....... +.+ ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v--~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV--SPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE--CCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc--CCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 458999999999999999999998764212 1222222222222234678889999999984321110 000 000
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.... +..+|++++|+|+..+.+..+..+...+.. .+. |+++|+||||.........+++... +...
T Consensus 257 ~~~~----i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~~----~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 322 (439)
T 1mky_A 257 VVDS----IEKADVVVIVLDATQGITRQDQRMAGLMER-RGR----ASVVVFNKWDLVVHREKRYDEFTKL-----FREK 322 (439)
T ss_dssp HHHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTC----EEEEEEECGGGSTTGGGCHHHHHHH-----HHHH
T ss_pred HHHH----HhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cCC----CEEEEEECccCCCchhhHHHHHHHH-----HHHH
Confidence 1112 234599999999986777666555555544 233 8999999999875421223333222 2222
Q ss_pred HhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCCCC
Q 023779 173 LQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGGQP 215 (277)
Q Consensus 173 ~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~~~ 215 (277)
+.... ..++ ..||+.+.++.+|++.+...+.......
T Consensus 323 ~~~~~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~i 360 (439)
T 1mky_A 323 LYFIDYSPLI------FTSADKGWNIDRMIDAMNLAYASYTTKV 360 (439)
T ss_dssp CGGGTTSCEE------ECBTTTTBSHHHHHHHHHHHHHHHTCCC
T ss_pred hccCCCCcEE------EEECCCCCCHHHHHHHHHHHHHhhcccC
Confidence 22222 2332 4688899999999999999887654433
No 104
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.74 E-value=8.4e-17 Score=122.71 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC--CceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD--GQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|++++....... ..|...........+ ...+.+|||||...... ....+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HHHHH
Confidence 478999999999999999999976542221 122222222112233 34588999999764321 11122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
+..+|++++|+|++.+.+... ..++..+..... ....|+++|+||+|.........++ ...+...
T Consensus 72 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 137 (167)
T 1c1y_A 72 ----MKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKEQ---------GQNLARQ 137 (167)
T ss_dssp ----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccCCHHH---------HHHHHHH
Confidence 234699999999983322122 234444444332 1224999999999976431111111 2333344
Q ss_pred c-CCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 176 C-DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 176 ~-~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
. +..++ ..|++.+.+++++++.|.+.+
T Consensus 138 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 138 WCNCAFL------ESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTSCEEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCcEE------EecCCCCCCHHHHHHHHHHHH
Confidence 3 33333 467888899999999988765
No 105
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=2.1e-17 Score=126.47 Aligned_cols=162 Identities=22% Similarity=0.146 Sum_probs=90.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
.+|+++|++|+|||||+|++++........ ...+......... .++ ..+.+|||||...... .+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~-------~~~--- 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIM-VDKEEVTLIVYDIWEQGDAGG-------WLQ--- 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEE-ETTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEE-ECCeEEEEEEEECCCccccch-------hhh---
Confidence 689999999999999999998765422221 1222222222222 344 4578999999764211 011
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........+. ...+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREVSLEE---------GRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhhcccCCHHH---------HHHHHHHc
Confidence 112334699999999983222111 233333333322 1124999999999976431111111 23344555
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+..++ ..|++.+.++.++++.+.+.+..
T Consensus 140 ~~~~~------~~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHI------ETSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEE------EecCccCCCHHHHHHHHHHHHHh
Confidence 55544 46888889999999999887654
No 106
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.73 E-value=8.5e-17 Score=142.29 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=89.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..+|+|+|++|+|||||+|+|++..... .+.. +.|....... ...++..+.||||||+.++.. .+........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~-i~~~g~~l~liDT~G~~~~~~---~ve~~gi~~~ 306 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEEC-FIHDKTMFRLTDTAGLREAGE---EIEHEGIRRS 306 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC--------------------CEE-EEETTEEEEEEC----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEE-EEECCeEEEEEECCCCCcchh---HHHHHHHHHH
Confidence 4789999999999999999999875321 1222 2333333232 336888999999999875321 1111112223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
..++..+|++++|+|++.+.+.... ....++..+ . ..|+++|+||+|.... ..... .. +... .
T Consensus 307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~--~~~~~--~~-----l~~~---~ 370 (476)
T 3gee_A 307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAAN--ADALI--RA-----IADG---T 370 (476)
T ss_dssp -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTT--THHHH--HH-----HHHH---H
T ss_pred HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCc--cchhH--HH-----HHhc---C
Confidence 4467889999999999966655321 222334433 2 2399999999998765 22221 11 2211 0
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+ ...|++.+.++++|++.|.+.+.
T Consensus 371 ~~~~------i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 371 GTEV------IGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TSCE------EECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCce------EEEEECCCCCHHHHHHHHHHHHh
Confidence 1122 25688899999999999999887
No 107
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=2.4e-17 Score=128.38 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=97.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHH
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGK 91 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~ 91 (277)
.+..+..+|+|+|++|||||||+|.+++..+.... ..|.... ......++. .+.+|||||....
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~--------- 80 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRF-KKEIVVDGQSYLLLIRDEGGPPEL--------- 80 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEE-EEEEEETTEEEEEEEEECSSSCCH---------
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceE-EEEEEECCEEEEEEEEECCCChhh---------
Confidence 34456799999999999999999999876643221 1122211 122234554 4678999996541
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
. + +..+|++++|+|++.+.+... ..++..+..... ....|++||+||+|........+.. . ...
T Consensus 81 --~-~----~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~--~-----~~~ 145 (184)
T 3ihw_A 81 --Q-F----AAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVIDD--S-----RAR 145 (184)
T ss_dssp --H-H----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCSCH--H-----HHH
T ss_pred --h-e----ecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccccCH--H-----HHH
Confidence 1 2 234699999999984332223 233333433211 1234999999999974220011100 0 133
Q ss_pred HHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+....+ ..++ .+|++.+.++.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~~~------e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 146 KLSTDLKRCTYY------ETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHHTTTCEEE------EEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 4555554 3443 46888889999999999877654
No 108
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.73 E-value=2.3e-17 Score=127.40 Aligned_cols=157 Identities=19% Similarity=0.114 Sum_probs=94.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+..+|+++|++|||||||+|.+++..+.. . . +|...........++ ..+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~-~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-L-E---KTESEQYKKEMLVDGQTHLVLIREEAGAPD------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-C-S---SCSSSEEEEEEEETTEEEEEEEEECSSSCC------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-c-C---CCcceeEEEEEEECCEEEEEEEEECCCCch------------h
Confidence 345899999999999999999999776532 1 1 121111122222344 3578999999653 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcC-ccCcEEEEEeCCCCCCcc--cccHHHHhcccCCchHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKN-VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECPKPLK 170 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~~~~~~~ 170 (277)
. ++.++|++++|+|++.+.+... ..++.++....... ...|+++|+||+|..... ....++ ..
T Consensus 68 ~----~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~---------~~ 134 (178)
T 2iwr_A 68 K----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR---------AR 134 (178)
T ss_dssp H----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHH---------HH
T ss_pred H----HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHH---------HH
Confidence 1 2234699999999984333333 23334555543211 224999999999974210 011111 22
Q ss_pred HHHhhcC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 171 EILQLCD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 171 ~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+....+ ..++ ..|++.+.+++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 135 ALXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHH
Confidence 3333332 2333 4678888999999999877654
No 109
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.4e-17 Score=133.75 Aligned_cols=163 Identities=18% Similarity=0.116 Sum_probs=97.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|+|||||+|+|++..+..... .+.+......... .++ ..+.||||||.....
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------- 76 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLE-IEGKRIKAQIWDTAGQERYR----------- 76 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTT-----------
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEE-ECCEEEEEEEEECCCccchh-----------
Confidence 345899999999999999999999776532221 1222222222222 344 468999999965422
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+.+..+ ..++..+....... .|++||+||+|.........++ ...+.
T Consensus 77 ~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~ 145 (223)
T 3cpj_B 77 AITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEE---------SKTFA 145 (223)
T ss_dssp CCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHH---------HHHHH
T ss_pred hhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHH---------HHHHH
Confidence 122345678899999999984332222 23444454433223 3899999999976431011111 23344
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+.++.++++.|...+..
T Consensus 146 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 146 QENQLLFT------ETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHTTCEEE------ECCCC-CCCHHHHHHHHHHHHTT
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 44454444 35777889999999999888765
No 110
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.73 E-value=2.8e-17 Score=125.00 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+++|++|+|||||+|+|++....... ..|............+ ..+.+|||||..... . ....+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~----~---~~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC----DPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS----A---MRDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC----H---HHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc----CCccceEEEEEEEECCEEEEEEEEECCCchhhh----H---HHHHh
Confidence 378999999999999999999976542221 1122221121222343 347899999976421 1 11122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
+..+|++++|+|++...+..+ ..++..+...... ...|+++|+||+|.... ...... ...+...
T Consensus 72 ----~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~--~~~~~~--------~~~~~~~ 136 (166)
T 2ce2_X 72 ----MRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR--TVESRQ--------AQDLARS 136 (166)
T ss_dssp ----HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC--CSCHHH--------HHHHHHH
T ss_pred ----hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc--ccCHHH--------HHHHHHH
Confidence 234599999999983322222 3344444443321 12499999999997653 211111 3334444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.+..++ ..|+..+.++.++++.|.+.+.
T Consensus 137 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 137 YGIPYI------ETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HTCCEE------EECTTTCTTHHHHHHHHHHHHH
T ss_pred cCCeEE------EecCCCCCCHHHHHHHHHHHHH
Confidence 454444 3577778899999999987764
No 111
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=4.5e-17 Score=127.66 Aligned_cols=166 Identities=18% Similarity=0.092 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|+|||||+|+|++..+.... ..|...........++ ..+.+|||||..... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD-----------R 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSC----CCSSCCCEEEEEESSSCEEEEEEECCCCSSSST-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCcccceeEEEEEECCEEEEEEEEECCCCcchh-----------H
Confidence 5589999999999999999999976542211 1122111111222344 468899999976532 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~~ 168 (277)
....++..+|++++|+|++.+.+... ..++..+..... . .|++||+||+|.... ....+.+.. .. ...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence 22345678999999999984322222 134555555432 2 399999999998754 222111110 00 011
Q ss_pred HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+....+. .++ .+|++.+.+++++++.|.+.+-
T Consensus 157 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 157 GQKLAKEIGACCYV------ECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHHHHTCSCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE------EeeCCCCCCHHHHHHHHHHHHh
Confidence 3334444443 333 5688888999999999877653
No 112
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.73 E-value=5.9e-18 Score=130.69 Aligned_cols=164 Identities=16% Similarity=0.054 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+..+|+++|++|+|||||+|+|++......... +.+......... ..+ ..+.+|||||......
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~--t~~~~~~~~~~~-~~~~~~~~~~~~Dt~G~~~~~~---------- 71 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQ--TIGLDFFLRRIT-LPGNLNVTLQIWDIGGQTIGGK---------- 71 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHH--TTTSSEEEEEEE-ETTTEEEEEEEEECTTCCTTCT----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCC--ceeEEEEEEEEE-eCCCCEEEEEEEECCCCccccc----------
Confidence 458999999999999999999997664221111 111122222222 343 5789999999664321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
....++..+|++++|+|++.+.+..+ ..++..+..........| +++|+||+|.........++ ...+
T Consensus 72 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~---------~~~~ 141 (178)
T 2hxs_A 72 -MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEK---------HLRF 141 (178)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHH---------HHHH
T ss_pred -hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHH---------HHHH
Confidence 11123467799999999983322222 234444444321101124 88999999975431011111 2334
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
....+..++ ..|++.+.++.++++.|...+..
T Consensus 142 ~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 142 CQENGFSSH------FVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp HHHHTCEEE------EECTTTCTTHHHHHHHHHHHHTT
T ss_pred HHHcCCcEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 444454443 45778889999999999887754
No 113
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.73 E-value=3.1e-17 Score=130.97 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeE--EEEEeeeC-----------CceEEEEeCCCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~liDtpG~~~~~~ 84 (277)
...+|+|+|++|||||||+|+|++...... ...|.... ........ ...+.||||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----- 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ----- 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH-----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc-----
Confidence 457999999999999999999997664211 11222211 11111111 356899999992
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC--ccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN--VFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
..+......++..+|++++|+|++...+. .....++..+.... ...|++||+||+|.........+
T Consensus 95 ------~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~---- 162 (217)
T 2f7s_A 95 ------ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER---- 162 (217)
T ss_dssp ------HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH----
T ss_pred ------HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH----
Confidence 23334444456788999999999832221 22223444432211 23499999999997643101111
Q ss_pred ccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 163 HECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
....+....+..++ ..|++.+.++.++++.|.+.+.
T Consensus 163 -----~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 -----QARELADKYGIPYF------ETSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp -----HHHHHHHHTTCCEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHCCCcEE------EEECCCCCCHHHHHHHHHHHHH
Confidence 13344455555444 4577788899999999887654
No 114
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.73 E-value=5.2e-17 Score=126.17 Aligned_cols=167 Identities=16% Similarity=0.055 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
+..+|+++|++|+|||||++++++........ .|...........++. .+.+|||||.... ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC----CCSCCEEEEEEEETTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC----CcccceeEEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence 45899999999999999999999765422211 1211111111223444 4679999996532 12
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cC-Cch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----EC-PKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~-~~~ 168 (277)
....++..+|++++|+|++.+.+..+. .++..+..... ..|+++|+||+|.... ....+.+.. .. ...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 143 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 143 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHH
Confidence 223456789999999999843222222 34555555433 2499999999997654 222221110 00 011
Q ss_pred HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+....+. .++ ..|++.+.++.++++.+.+.+..
T Consensus 144 ~~~~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 144 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCcEEE------EecCCCccCHHHHHHHHHHHHhc
Confidence 2334444453 333 56788889999999999888754
No 115
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.72 E-value=1e-16 Score=142.48 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=109.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc-----ccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK-----ASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKE 92 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~ 92 (277)
+..+|+++|+.++|||||+|+|++..... ......+.|....+.... +++..+.+|||||+. .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh~-----------~ 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHA-----------D 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHH-----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCChH-----------H
Confidence 45899999999999999999999876110 011122345444444333 577899999999942 3
Q ss_pred HHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 93 IVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
+.......+..+|++++|+|++.+....+...+..+.. .+. |+++++||+|.... ..++..... +.++
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~i----p~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FNI----PIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TTC----CBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cCC----CEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 44444455678899999999986777777777766655 343 77999999998754 445444444 5666
Q ss_pred Hhhc-C---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLC-D---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~-~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+... + ..++ +.|+..+.++.+|++.|...++.
T Consensus 154 l~~~~~~~~~~ii------~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 154 LQSTHNLKNSSII------PISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp HHHSSSGGGCCEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhhhcccccceEE------EEECcCCCCHHHHHHHHHHhhcC
Confidence 6554 2 2232 45788889999999999997753
No 116
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=140.79 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=96.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+..+|+|+|++|+|||||+|.|++..+... .+|........ ...+..+.||||||.... ....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETV-EYKNISFTVWDVGGQDKI-----------RPLW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEE-EETTEEEEEEECC----------------CCSH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEE-ecCcEEEEEEECCCCHhH-----------HHHH
Confidence 456999999999999999999997764222 12333433333 357788999999994432 1222
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
..++..+|++++|+|++..-+... ..+...+...... ..|++||+||+|.... .....+... +.. ..
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~~-----~~~--~~ 295 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITDK-----LGL--HS 295 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHHH-----HTC--TT
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHHH-----hch--hh
Confidence 234567899999999984333332 2222333322111 2499999999998755 333322221 100 00
Q ss_pred cC-CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CD-NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.. ..+.. ...|++.+.++++|++.|.+.+..
T Consensus 296 ~~~~~~~~----~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 296 LRHRNWYI----QATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CCSSCEEE----EECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhcCCCEE----EEEECCCCcCHHHHHHHHHHHHHh
Confidence 00 11111 246888889999999999887754
No 117
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=4.7e-17 Score=127.60 Aligned_cols=166 Identities=10% Similarity=0.027 Sum_probs=99.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCcceeeEEEEEe--eeC--CceEEEEeCCCCCCCCCCc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGVTKTCEMKTTV--LKD--GQVVNVIDTPGLFDLSAGS 86 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~--~~~--~~~~~liDtpG~~~~~~~~ 86 (277)
....+|+|+|++|||||||++.|.+......... ....|......... ..+ ...+.+|||||....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---- 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---- 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH----
Confidence 3458999999999999999999887543221110 01122222221111 112 245899999996642
Q ss_pred hHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH----HHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 87 EFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET----AVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~----~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
......++..+|++++|+|++.+....+.. ...|+..........|+++|+||+|.... ...++
T Consensus 88 -------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~--- 155 (198)
T 3t1o_A 88 -------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVEM--- 155 (198)
T ss_dssp -------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHHH---
T ss_pred -------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHHH---
Confidence 122233567889999999998332222322 23344443111123499999999997654 22222
Q ss_pred ccCCchHHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 163 HECPKPLKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+....+. .++ ..|++.+.++.++++.|.+.+..
T Consensus 156 ------~~~~~~~~~~~~~~------~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 156 ------VRAVVDPEGKFPVL------EAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp ------HHHHHCTTCCSCEE------ECBGGGTBTHHHHHHHHHHHHHH
T ss_pred ------HHHHHHhcCCceEE------EEecCCCcCHHHHHHHHHHHHHH
Confidence 3334444444 333 56888899999999999877654
No 118
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.72 E-value=7.1e-17 Score=127.92 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=98.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|++|||||||+|.|++..+.... ..|...........++ ..+.||||||.... .
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------T
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------h
Confidence 45689999999999999999999986642211 1222221111112233 46899999995431 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---cCC-ch
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (277)
.....++..+|++++|+|++.+.+... ..++..+..... . .|++||+||+|..... ..+.++... ... ..
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 166 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 166 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHHH
Confidence 222345688999999999984322222 234445555432 2 3999999999976431 111111110 000 11
Q ss_pred HHHHHhhcC-CeEEEEeCCCccccc-ChhHHHHHHHHHHHHH
Q 023779 169 LKEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (277)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~ 208 (277)
...+....+ ..++ ++|++ .+.++.++++.|.+.+
T Consensus 167 ~~~~~~~~~~~~~~------e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 167 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHTCSEEE------ECCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEE------EeeeccCCcCHHHHHHHHHHHH
Confidence 334444444 2333 46777 5789999999987765
No 119
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.72 E-value=4.2e-17 Score=150.79 Aligned_cols=122 Identities=18% Similarity=0.214 Sum_probs=76.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcce-eeEEE-----EEe---------------------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTK-TCEMK-----TTV--------------------------- 64 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~-----~~~--------------------------- 64 (277)
...+|+|+|.+|+|||||+|+|+|....+.+..+.+... ...+. ...
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999999887555432222100 00000 000
Q ss_pred ------------------eeCC----ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHH
Q 023779 65 ------------------LKDG----QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEE 122 (277)
Q Consensus 65 ------------------~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~ 122 (277)
.+.. ..+.||||||+.+... .......+++.+|++|+|+|++..++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000 3689999999764211 122222334567999999999877777776
Q ss_pred HHHH-HHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 123 TAVH-RLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 123 ~~~~-~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+. .+.. .+ .|+++|+||+|....
T Consensus 220 ~~l~~~l~~-~~----~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENYIKG-RG----LTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHHTTT-SC----CCEEEEEECGGGGGG
T ss_pred HHHHHHHHh-hC----CCEEEEEECcccccc
Confidence 5543 2222 12 389999999997644
No 120
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.72 E-value=2.1e-17 Score=145.65 Aligned_cols=163 Identities=17% Similarity=0.186 Sum_probs=97.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|+|++|+|||||+|+|++........ ..+.|....... ...++..+.+|||||+.++.. .+........
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~-~~gtT~d~~~~~-i~~~g~~v~liDT~G~~~~~~---~ve~~gi~~~ 297 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTD-LPGTTRDVVESQ-LVVGGIPVQVLDTAGIRETSD---QVEKIGVERS 297 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSC-CTTCCHHHHHHE-EEETTEEEEECC----------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccC-CCCeeEEEEEEE-EEECCEEEEEEECCccccchh---HHHHHHHHHH
Confidence 34789999999999999999999865321111 123333332222 236788999999999865321 1111111223
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
...+..+|++++|+|++.+++..+..++..+.. .|+++|+||+|.... .... .+.. +. ..
T Consensus 298 ~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~-----~~-----~~ 357 (462)
T 3geh_A 298 RQAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY-----PE-----NI 357 (462)
T ss_dssp -CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC-----CT-----TC
T ss_pred hhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH-----hc-----cC
Confidence 345688999999999997777776555554432 389999999998755 2211 1111 10 11
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
..+ ...|++.+.|+++|++.|.+.+...
T Consensus 358 ~~~------i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 358 TQI------VHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CCE------EEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CcE------EEEECCCCCCHHHHHHHHHHHHhcc
Confidence 122 2568888999999999999988653
No 121
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.72 E-value=1.1e-16 Score=124.40 Aligned_cols=167 Identities=15% Similarity=0.110 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+++|++|+|||||+|.|++....... .+|...........++ ..+.+|||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence 34589999999999999999999976542211 1122211111112233 46889999995431 1
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc---cCC-ch
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH---ECP-KP 168 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~---~~~-~~ 168 (277)
.....++..+|++++|+|++.+.+... ..++..+..... . .|+++|+||+|..... ..+.+.... ... ..
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 222345688999999999984322222 234444554432 2 3999999999976431 111111100 000 11
Q ss_pred HHHHHhhcC-CeEEEEeCCCccccc-ChhHHHHHHHHHHHHH
Q 023779 169 LKEILQLCD-NRCVLFDNKTKDEAK-GTEQVRQLLSLVNSVI 208 (277)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~s~~-~~~~~~~L~~~i~~~~ 208 (277)
...+....+ ..++ ++|++ .+.++.++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~------e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 146 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTCSEEE------ECBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE------EeeecCCCcCHHHHHHHHHHHH
Confidence 334444444 2343 46777 5789999999987765
No 122
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-16 Score=124.72 Aligned_cols=170 Identities=16% Similarity=0.090 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.+|+++|++|||||||+|++++.... .+. ..+.|....... .. .+.+|||||+......+......+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~-~~~~t~~~~~~~---~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RGK-RPGVTRKIIEIE---WK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SSS-STTCTTSCEEEE---ET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cCC-CCCccceeEEEe---cC--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 57999999999999999999987642 221 123333332221 22 788999999876554433323333333222
Q ss_pred c----CCCccEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCC
Q 023779 100 A----KDGIHAFLVVFSVTNRFSQEEETAV---------HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECP 166 (277)
Q Consensus 100 ~----~~~~~~~l~v~d~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~ 166 (277)
+ ...++++++|+|.. .+......+. ..+....... .|+++|+||+|.... . ...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~--~~~------ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKN--V--QEV------ 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSC--H--HHH------
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCc--H--HHH------
Confidence 2 33456777787765 2211101111 1112211122 389999999997755 2 111
Q ss_pred chHHHHHhhcCCeEEE-EeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 167 KPLKEILQLCDNRCVL-FDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 167 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...+....+..+.. .....++|++.+.++.++++.|.+.+...
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 22333333332100 00012568888899999999998887653
No 123
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=3.6e-17 Score=129.76 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|++|||||||+|+|++....... .+|...........++ ..+.+|||||..... .
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQEDYD-----------R 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEETTEEEEEEEEECTTCTTCT-----------T
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEECCEEEEEEEEECCCcHHHH-----------H
Confidence 4479999999999999999999977653221 1122111111122344 368899999976432 1
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----cCC-ch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----ECP-KP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~~~-~~ 168 (277)
....++..+|++++|+|++.+.+... ..++..+..... . .|+++|+||+|.... ....+.+.. ... ..
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 163 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDD 163 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHH
Confidence 22335678899999999983222222 344555555332 2 399999999998654 222222211 000 11
Q ss_pred HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+....+. .++ ..|++.+.++++|++.|.+.+..
T Consensus 164 ~~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 164 GRAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence 2333334443 333 46888889999999999887654
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.72 E-value=1.8e-17 Score=129.77 Aligned_cols=156 Identities=10% Similarity=0.013 Sum_probs=93.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|++++...... .+|....... ..+++..+.+|||||.... ...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~-~~~~~~~~~i~Dt~G~~~~-----------~~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEE-LAIGNIKFTTFDLGGHIQA-----------RRL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEE-EEETTEEEEEEECCCSGGG-----------TTS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEE-EEECCEEEEEEECCCCHHH-----------HHH
Confidence 3457999999999999999999997664221 1222222222 2357788999999996532 112
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++++|+|++.+-+... ...++...... ....|+++|+||+|.... ...++.. +.+.
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~ 150 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELR---------SALG 150 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCC--CCHHHHH---------HHhC
Confidence 2345678899999999984333222 11223222211 122499999999997653 2222221 1111
Q ss_pred hc---------C-CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 175 LC---------D-NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 175 ~~---------~-~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
.. . .... ..++|++.+.++.++++.|.+
T Consensus 151 ~~~~~~~~~~~~~~~~~----~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 151 LLNTTGSQRIEGQRPVE----VFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CSSCCC---CCSSCCEE----EEECBTTTTBSHHHHHHHHHT
T ss_pred CccccccccccccceEE----EEEeECCcCCCHHHHHHHHHh
Confidence 10 0 1111 125688889999999998764
No 125
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.72 E-value=6e-16 Score=132.78 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=106.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch-HHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE-FVGKEIVK 95 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~-~~~~~~~~ 95 (277)
....+|+++|++|||||||+|.|++.... .+. ....|........ ...+..+.+|||||+.+...... .+.. .
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~~-~~~~t~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~---~ 238 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE-IAS-YPFTTRGINVGQF-EDGYFRYQIIDTPGLLDRPISERNEIEK---Q 238 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCE-EEC-CTTCSSCEEEEEE-EETTEEEEEEECTTTSSSCSTTSCHHHH---H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCCeeeceeEEEE-EecCceEEEEeCCCccccchhhhhHHHH---H
Confidence 34589999999999999999999987642 221 1223333333322 24677899999999976432211 1111 2
Q ss_pred HHhhcCCCccEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 96 CLGMAKDGIHAFLVVFSVTNR--FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.+......+|++++|+|++.. ++..+ ..++..+...++ + .|+++|+||+|.... ..++. ...+
T Consensus 239 ~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~--~piilV~NK~Dl~~~--~~~~~---------~~~~ 304 (357)
T 2e87_A 239 AILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-D--LPFLVVINKIDVADE--ENIKR---------LEKF 304 (357)
T ss_dssp HHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-T--SCEEEEECCTTTCCH--HHHHH---------HHHH
T ss_pred HHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-C--CCEEEEEECcccCCh--HHHHH---------HHHH
Confidence 222334567999999998733 24443 456666666553 2 399999999997655 33322 2223
Q ss_pred HhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+...+..++ ..|++.+.|+++|++.|...+..
T Consensus 305 ~~~~~~~~~------~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 305 VKEKGLNPI------KISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHTTCCCE------ECBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHhcCCCeE------EEeCCCCcCHHHHHHHHHHHHHH
Confidence 333333333 46888889999999999888754
No 126
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.71 E-value=1.8e-17 Score=140.62 Aligned_cols=169 Identities=18% Similarity=0.121 Sum_probs=102.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-CceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
.|+|+|.+|||||||+|+|++..+.... ....|.......+. +. +..+.||||||+.........+...+...+.
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~--~~ftTl~p~~g~v~-~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIAD--YHFTTLVPNLGMVE-TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESS--TTSSCCCCCEEEEE-CSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCcccc--CCccccCceEEEEE-eCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 6899999999999999999976542211 11222222222222 34 3789999999975322222223444544443
Q ss_pred cCCCccEEEEEEeCCC---CCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 100 AKDGIHAFLVVFSVTN---RFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
.+|++++|+|++. +-...+ ..++..+......-...|++||+||+|.... . +. +..+...
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~---e~--------~~~l~~~ 299 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A---EN--------LEAFKEK 299 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H---HH--------HHHHHHH
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H---HH--------HHHHHHH
Confidence 3599999999983 222222 2344445443211123599999999997644 1 11 2223333
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcCC
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNGG 213 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~~ 213 (277)
+... ......|+..+.++++|++.|...+.....
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 3322 123467888899999999999999976544
No 127
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.71 E-value=3e-16 Score=131.40 Aligned_cols=175 Identities=13% Similarity=0.151 Sum_probs=98.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC---CCCc----------------------ceee------------
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAG---SSGV----------------------TKTC------------ 58 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~---~~~~----------------------t~~~------------ 58 (277)
.....+|+|+|.+|||||||+|+|+|....+.+.. ..+. |+..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 34558999999999999999999999876432211 1110 1000
Q ss_pred ------------EEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEE-EEEeCCCCCCHHHH-
Q 023779 59 ------------EMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFL-VVFSVTNRFSQEEE- 122 (277)
Q Consensus 59 ------------~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l-~v~d~~~~~~~~~~- 122 (277)
............+.||||||+..... ..+.+...+...+..++..++.++ +|+|++.+++..+.
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 00001111236799999999986432 112222233334444445556554 79999865655553
Q ss_pred HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHH
Q 023779 123 TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (277)
Q Consensus 123 ~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~ 202 (277)
.++..+.. .+ .|+++|+||+|..... ....+.+... + ..+...++ .....|++.+.++.+|++
T Consensus 183 ~~~~~~~~---~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~----~----~~~~~~~~---~v~~~SA~~~~gi~~l~~ 245 (299)
T 2aka_B 183 KIAKEVDP---QG--QRTIGVITKLDLMDEG-TDARDVLENK----L----LPLRRGYI---GVVNRSQKDIDGKKDITA 245 (299)
T ss_dssp HHHHHHCT---TC--SSEEEEEECGGGSCTT-CCCHHHHTTC----S----SCCTTCEE---ECCCCCCBCTTSCBCHHH
T ss_pred HHHHHhCC---CC--CeEEEEEEccccCCCC-chHHHHHhCC----c----CcCCCCcE---EEECCChhhccccccHHH
Confidence 23333332 12 3999999999987541 1122222210 0 01111222 234568888899999988
Q ss_pred HHHHH
Q 023779 203 LVNSV 207 (277)
Q Consensus 203 ~i~~~ 207 (277)
.|...
T Consensus 246 ~l~~~ 250 (299)
T 2aka_B 246 ALAAE 250 (299)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 128
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=5.4e-17 Score=127.84 Aligned_cols=157 Identities=11% Similarity=0.065 Sum_probs=90.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
.+..+|+++|++|||||||+|++++....... ...+.+ ... ..+++..+.+|||||..... ..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-~t~~~~----~~~-~~~~~~~l~i~Dt~G~~~~~-----------~~ 85 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT----SEE-LTIAGMTFTTFDLGGHIQAR-----------RV 85 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS----CEE-EEETTEEEEEEEECC----C-----------CG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccC-CCCCce----eEE-EEECCEEEEEEECCCcHhhH-----------HH
Confidence 34589999999999999999999987642211 111111 122 23567889999999955321 12
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++.++|++++|+|++.+-+... ...++...... ....|+++|+||+|.... ...++. .+.+.
T Consensus 86 ~~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~ 152 (198)
T 1f6b_A 86 WKNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERL---------REMFG 152 (198)
T ss_dssp GGGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHH---------HHHHT
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCcccc--CCHHHH---------HHHhC
Confidence 2345678899999999984322222 12233332211 122499999999997643 222221 11211
Q ss_pred hcC---------------CeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 175 LCD---------------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 175 ~~~---------------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
... .... ..++||+.+.+++++++.|.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~----~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 153 LYGQTTGKGSVSLKELNARPLE----VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CTTTCCCSSCCCTTTCCSCCEE----EEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccccccccccccccCceEE----EEEEECCCCCCHHHHHHHHHHh
Confidence 100 1111 1256888999999999988653
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.2e-16 Score=123.99 Aligned_cols=162 Identities=18% Similarity=0.140 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|++|+|||||+|+|++........ .|...........++ ..+.+|||||... . ....
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~ 93 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD----PTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQRE 93 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC----TTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccC----CCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchh
Confidence 456899999999999999999999766422211 122122222122343 4588999999765 1 1122
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.+ +..+|++++|+|++.+.+..+ ..++..+..... ....|++||+||+|.........++ ...+.
T Consensus 94 ~~----~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~ 159 (196)
T 2atv_A 94 GH----MRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQVSTEE---------GEKLA 159 (196)
T ss_dssp HH----HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCSCHHH---------HHHHH
T ss_pred hh----hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECcccccccccCHHH---------HHHHH
Confidence 22 234599999999983222222 234444544332 1224999999999976431111111 22333
Q ss_pred hhcCCeEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~ 210 (277)
...+..++ ..|++.+. ++.++++.|.+.+..
T Consensus 160 ~~~~~~~~------~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 160 TELACAFY------ECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp HHHTSEEE------ECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred HHhCCeEE------EECCCcCCcCHHHHHHHHHHHHHh
Confidence 34444444 45777788 999999998877643
No 130
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=2.3e-17 Score=127.84 Aligned_cols=166 Identities=18% Similarity=0.107 Sum_probs=93.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+++|++|+|||||+|++++....... .+|...........++ ..+.+|||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------- 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN----------- 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------
Confidence 34589999999999999999999976532111 1121111111111222 346699999965421
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH-h--cccCCchH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF-L--GHECPKPL 169 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~-l--~~~~~~~~ 169 (277)
.....++..+|++++|+|++.+.+.... .++..+..... ..|+++|+||+|.... ...... . ..-.....
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~ 145 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQG 145 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC--cccccccccCCCCCHHHH
Confidence 2223456788999999999833222222 34555555432 2499999999997654 211000 0 00000113
Q ss_pred HHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 170 KEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 170 ~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+....+. .++ +.|++.+.++.++++.|.+.+
T Consensus 146 ~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 146 EELKKLIGAPAYI------ECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 334444453 343 568888899999999998765
No 131
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=1e-16 Score=127.49 Aligned_cols=168 Identities=19% Similarity=0.132 Sum_probs=100.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
....+|+|+|++|+|||||++.+++..+.... .+|...........++ ..+.+|||||......
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---------- 72 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDY----IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR---------- 72 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccC----CCccceeEEEEEEECCEEEEEEEEECCCcHHHHH----------
Confidence 34589999999999999999999976542211 1122111111122343 4689999999865321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-CCchHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-CPKPLKE 171 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-~~~~~~~ 171 (277)
....++..+|++++|+|++.+.+... ..++..+..... . .|++||+||+|.... ..+....... .......
T Consensus 73 -~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~ 146 (212)
T 2j0v_A 73 -LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEE 146 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHH
T ss_pred -HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHH
Confidence 12335678899999999983322222 134455554432 2 499999999997644 2110000000 0011333
Q ss_pred HHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+....+. .++ +.|++.+.++.++++.|.+.+..
T Consensus 147 ~~~~~~~~~~~------~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 147 LRKQIGAAAYI------ECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp HHHHHTCSEEE------ECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHcCCceEE------EccCCCCCCHHHHHHHHHHHHhh
Confidence 4444453 443 46788889999999999888765
No 132
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=5e-18 Score=136.04 Aligned_cols=164 Identities=16% Similarity=0.074 Sum_probs=97.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
.....+|+|+|.+|||||||+|+++............+.+........ ...+..+.+|||||......
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 79 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGG----------- 79 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSC-----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhH-----------
Confidence 345689999999999999999995533321111112222222222211 12335689999999543221
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....++..+|++++|+|++.+.+... ..++..+...+. + .|+++|+||+|.... .... . ...+..
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~--~~~~-~--------~~~~~~ 145 (221)
T 3gj0_A 80 LRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDR--KVKA-K--------SIVFHR 145 (221)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSC--SSCG-G--------GCCHHH
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCccccc--cccH-H--------HHHHHH
Confidence 11123457799999999984322222 234444554432 2 399999999997654 2111 1 112333
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
..+..++ .+|++.+.++.++++.|.+.+...
T Consensus 146 ~~~~~~~------~~Sa~~~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 146 KKNLQYY------DISAKSNYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp HHTCEEE------ECBGGGTBTTTHHHHHHHHHHHTC
T ss_pred HcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhC
Confidence 3444444 468888899999999998887653
No 133
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=5e-16 Score=130.52 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=79.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH-HHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI-VKC 96 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~-~~~ 96 (277)
...+|+|+|++|||||||+|.+++....... ...+.|...........++..+.+|||||... ....+ ...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~ 73 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQ 73 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhH
Confidence 3489999999999999999999876321111 12344555444443323567899999999432 11111 122
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHH-HHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEE-TAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~-~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
...++.++|++++|+|++.+.+..+. .+..++..........|+++|+||+|...
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 23345788999999999954443433 33444444321111249999999999875
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.69 E-value=5.3e-16 Score=137.32 Aligned_cols=160 Identities=21% Similarity=0.283 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCC-CCCCCchHHH-HHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF-DLSAGSEFVG-KEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~-~~~~~~~~~~-~~~~~~ 96 (277)
..+|+|+|.+|+|||||+|+|++........ ..++|....... ...++..+.+|||||+. .+....+... ......
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~-~~gTT~d~~~~~-i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTD-IPGTTRDVISEE-IVIRGILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCC-SSCCSSCSCCEE-EEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCC-CCCeeeeeEEEE-EecCCeEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 3789999999999999999999875321111 122333332232 33678899999999987 5432211111 111222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
+..+|++|+|+|++.+.+..+..+++.+ . + .|+++|+||+|.... ...++ +..+.. .
T Consensus 321 ----~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~ 377 (482)
T 1xzp_A 321 ----IEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-T 377 (482)
T ss_dssp ----HHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-C
T ss_pred ----hhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-C
Confidence 3456999999999866666665554433 2 2 389999999997543 22221 222221 1
Q ss_pred CCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 177 DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 177 ~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+..++ ..|++.+.++++|++.|.+.+.
T Consensus 378 ~~~~i------~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 378 DRHMV------KISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp STTEE------EEEGGGTCCHHHHHHHHHHHTH
T ss_pred CCcEE------EEECCCCCCHHHHHHHHHHHHh
Confidence 12222 4688889999999999988644
No 135
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.69 E-value=1.7e-16 Score=136.39 Aligned_cols=130 Identities=17% Similarity=0.175 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--ccee----------------------------------------
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--VTKT---------------------------------------- 57 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~--~t~~---------------------------------------- 57 (277)
.+|+|+|++|||||||+|+|+|..+++.+....+ ++.-
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999876555432111 0000
Q ss_pred ----------eEEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH
Q 023779 58 ----------CEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV 125 (277)
Q Consensus 58 ----------~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~ 125 (277)
.....+.......+.||||||+..... ....+...+......++.++|++++|++.. ........++
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~ 193 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI 193 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence 000011112244689999999987532 123344555666666678899999999876 2222223444
Q ss_pred HHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 126 HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
.++..+...+ .|+++|+||+|....
T Consensus 194 ~l~~~~~~~~--~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 194 KISREVDPSG--DRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHSCTTC--TTEEEEEECGGGCCT
T ss_pred HHHHHhcccC--CCEEEEEeCCccCCC
Confidence 5555543222 389999999998754
No 136
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.69 E-value=7e-19 Score=138.77 Aligned_cols=163 Identities=19% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
+...+|+|+|++|||||||+|+|++........ .+.+......... .++ ..+.||||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--STIGVDFKIRTIE-LDGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--HHHCCSEEEEEEE-ETTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--CcccceEEEEEEE-ECCEEEEEEEEECCCcHhHHH----------
Confidence 345899999999999999999999766422211 1122222222222 444 4689999999654321
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
....++..+|++++|+|++.+.+... ..++..+....... .|++||+||+|.... ..+.. . ....+.
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~--~~v~~--~-----~~~~~~ 165 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTK--KVVDY--T-----TAKEFA 165 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC----CCCCS--C-----C-CHHH
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCcc--ccCCH--H-----HHHHHH
Confidence 12234578899999999984332222 23333333322222 499999999997644 11100 0 123333
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+.. ....|++.+.++.++++.|.+.+..
T Consensus 166 ~~~~~~------~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 166 DSLGIP------FLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HTTTCC------BCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHcCCe------EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444433 2356888999999999998776543
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=1.7e-15 Score=132.30 Aligned_cols=166 Identities=15% Similarity=0.238 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeee--------------C--------CceEEE
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNV 73 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~l 73 (277)
...++|+++|+.++|||||+++|+|...... .....+.|....+...... . ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3458999999999999999999997542111 1112233444333221110 1 157999
Q ss_pred EeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 74 IDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|||||. ..+...+......+|++++|+|++.+. .......+..+.. .+. .|+++++||+|....
T Consensus 86 iDtPGh-----------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGH-----------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSH-----------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCH-----------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 999993 234444455567889999999998655 5555666655543 333 379999999998755
Q ss_pred ccccHHHHhcccCCchHHHHHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 153 HEKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 153 ~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.......+. +.+++... ...++ +.|+..+.++++|++.|...++.
T Consensus 151 --~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 --KQAEENYEQ-----IKEFVKGTIAENAPII------PISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp --TTTTTHHHH-----HHHHHTTSTTTTCCEE------EC------CHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHH-----HHHHHhhcCCCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 221111222 34444432 12222 46888889999999999987654
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.69 E-value=2.7e-17 Score=143.18 Aligned_cols=166 Identities=17% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
|....++|+|+|++|+|||||+|+|++....... ...+.|......... +.+ ..+.+|||||+.+............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~-~~~~~~l~liDTpG~~d~~~l~~~~~~~~ 107 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSME-LHPIGPVTLVDTPGLDDVGELGRLRVEKA 107 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEE-ETTTEEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEE-ECCCCeEEEEECcCCCcccchhHHHHHHH
Confidence 4456689999999999999999999987753222 223344444444444 344 3899999999987653322212222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.. ++..+|++++|+|+ .....+..++.++.+. + .|+++|+||+|.... ... +. ...+.
T Consensus 108 ~~----~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~-~----~piIvV~NK~Dl~~~--~~~-~~--------~~~l~ 165 (423)
T 3qq5_A 108 RR----VFYRADCGILVTDS--APTPYEDDVVNLFKEM-E----IPFVVVVNKIDVLGE--KAE-EL--------KGLYE 165 (423)
T ss_dssp HH----HHTSCSEEEEECSS--SCCHHHHHHHHHHHHT-T----CCEEEECCCCTTTTC--CCT-HH--------HHHSS
T ss_pred HH----HHhcCCEEEEEEeC--CChHHHHHHHHHHHhc-C----CCEEEEEeCcCCCCc--cHH-HH--------HHHHH
Confidence 22 34577999999998 5556677777777765 2 389999999998765 221 11 11121
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+. .....|++.+.++++|++.|.+.++.
T Consensus 166 ~~~g~------~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 166 SRYEA------KVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTC------CCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHcCC------CEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 22232 33467888999999999999999854
No 139
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.69 E-value=1.3e-15 Score=140.36 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=101.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCC--c------------------------------------------
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSG--V------------------------------------------ 54 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~--~------------------------------------------ 54 (277)
-++|+|+|.+++|||||+|+|+|..+++.+....+ +
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 36899999999999999999999887665532111 0
Q ss_pred -----ceeeEEEEEeeeCCceEEEEeCCCCCCCCC--CchHHHHHHHHHHhhc-CCCccEEEEEEeCCCCCCHHHH-HHH
Q 023779 55 -----TKTCEMKTTVLKDGQVVNVIDTPGLFDLSA--GSEFVGKEIVKCLGMA-KDGIHAFLVVFSVTNRFSQEEE-TAV 125 (277)
Q Consensus 55 -----t~~~~~~~~~~~~~~~~~liDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~v~d~~~~~~~~~~-~~~ 125 (277)
+.......+.......++||||||+..... ....+...+...+..+ ...+|++|+|+|++..+...+. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 000001111122344689999999987432 1222222333333322 2578999999999866666664 455
Q ss_pred HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
..+... + .|+++|+||+|..... .....++... +. .....+ ......|+..+.+++.|++.|.
T Consensus 211 ~~L~~~-g----~pvIlVlNKiDlv~~~-~~~~~il~~~-------~~-~l~lg~---~~VV~iSA~~G~GvdeL~eaI~ 273 (772)
T 3zvr_A 211 KEVDPQ-G----QRTIGVITKLDLMDEG-TDARDVLENK-------LL-PLRRGY---IGVVNRSQKDIDGKKDITAALA 273 (772)
T ss_dssp HHHCTT-C----SSEEEEEECTTSSCTT-CCSHHHHTTC-------SS-CCSSCE---EECCCCCCEESSSSEEHHHHHH
T ss_pred HHHHhc-C----CCEEEEEeCcccCCcc-hhhHHHHHHH-------hh-hhhccC---CceEEecccccccchhHHHHHH
Confidence 544432 2 3899999999988651 1111221110 00 001122 2344568888899999999988
Q ss_pred H
Q 023779 206 S 206 (277)
Q Consensus 206 ~ 206 (277)
.
T Consensus 274 ~ 274 (772)
T 3zvr_A 274 A 274 (772)
T ss_dssp H
T ss_pred H
Confidence 6
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.68 E-value=1.7e-16 Score=138.29 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cC------------CCCCcceeeEEE----EEeeeCCceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SA------------GSSGVTKTCEMK----TTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~------------~~~~~t~~~~~~----~~~~~~~~~~~liDtpG~~ 80 (277)
+..+|+++|++|+|||||+|+|++...... +. .....+...... .........+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 448999999999999999999998542110 00 000000000000 0000112678999999954
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~ 159 (277)
+ +.......+..+|++++|+|+..+. .......+..+... +. +|+++|+||+|.... .....
T Consensus 87 ~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~~~ 149 (403)
T 3sjy_A 87 V-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEALS 149 (403)
T ss_dssp G-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHHHH
T ss_pred H-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHHHH
Confidence 3 2222233345779999999999655 45556666655553 33 289999999998765 44444
Q ss_pred HhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 160 FLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.... +.+++..++.... .....|+..+.++++|++.|...++.
T Consensus 150 ~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 150 QYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCC
Confidence 4443 5555544331100 11246888889999999999987654
No 141
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=2e-15 Score=129.38 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=95.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC--CCCcc-----------------------eee--------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAG--SSGVT-----------------------KTC-------------- 58 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--~~~~t-----------------------~~~-------------- 58 (277)
...+|+|+|.+|||||||+|+|+|..+.+.+.. ...++ +..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 347899999999999999999999876433311 11111 000
Q ss_pred ----------EEEEEeeeCCceEEEEeCCCCCCCCCC--chHHHHHHHHHHhhcC-CCccEEEEEEeCCCCCCHHHHHHH
Q 023779 59 ----------EMKTTVLKDGQVVNVIDTPGLFDLSAG--SEFVGKEIVKCLGMAK-DGIHAFLVVFSVTNRFSQEEETAV 125 (277)
Q Consensus 59 ----------~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~v~d~~~~~~~~~~~~~ 125 (277)
............+.||||||+...... ...+...+...+..++ ...+++++|++++..+...+. +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~ 187 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 187 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--H
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--H
Confidence 000111112467999999999764321 2222233333333333 344667777887655554443 2
Q ss_pred HHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 126 HRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
.++......+ .|+++|+||+|..... ....+++... . ......++. ....|++.+.++.+|++.+.
T Consensus 188 ~i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~-~-------~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~ 253 (353)
T 2x2e_A 188 KVAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLENK-L-------LPLRRGYIG---VVNRSQKDIDGKKDITAALA 253 (353)
T ss_dssp HHHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTTC-S-------SCCTTCEEE---CCCCCHHHHHTTCCHHHHHH
T ss_pred HHHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhCC-c-------ccccCCceE---EEeCCcccccccccHHHHHH
Confidence 3344432222 3899999999987541 1122333220 0 001112322 33457888888888888886
Q ss_pred H
Q 023779 206 S 206 (277)
Q Consensus 206 ~ 206 (277)
.
T Consensus 254 ~ 254 (353)
T 2x2e_A 254 A 254 (353)
T ss_dssp H
T ss_pred H
Confidence 6
No 142
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.68 E-value=1.2e-15 Score=133.26 Aligned_cols=165 Identities=13% Similarity=0.194 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccc-cCCCCCcceeeEEEEEeee--------------C--------CceEEEE
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA-SAGSSGVTKTCEMKTTVLK--------------D--------GQVVNVI 74 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~li 74 (277)
..++|+++|+.++|||||+++|+|...... .....+.|....+...... . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 448999999999999999999997542111 1111234444433322111 0 1579999
Q ss_pred eCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 75 DTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 75 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
||||.. .+...+......+|++++|+|++.+. .......+..+..+ +. .|+++++||+|....
T Consensus 89 DtPGh~-----------~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~- 152 (410)
T 1kk1_A 89 DAPGHE-----------ALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK- 152 (410)
T ss_dssp ECSSHH-----------HHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH-
T ss_pred ECCChH-----------HHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH-
Confidence 999932 33344444456779999999998655 55666666655543 43 279999999998765
Q ss_pred cccHHHHhcccCCchHHHHHhhc---CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 154 EKTLEDFLGHECPKPLKEILQLC---DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.......+. +.+++... ...++ ..|+..+.+++.|++.|...++.
T Consensus 153 -~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 -EKALENYRQ-----IKEFIEGTVAENAPII------PISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp -HHHHHHHHH-----HHHHHTTSTTTTCCEE------ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -HHHHHHHHH-----HHHHHHhcCcCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 333233333 44454432 12222 45788889999999999987654
No 143
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=2.5e-16 Score=122.47 Aligned_cols=170 Identities=16% Similarity=0.131 Sum_probs=87.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe----eeCCceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV----LKDGQVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
..+|+|+|++|||||||+|.|++......+....+........... ......+.+|||||.. ++.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~ 70 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE-----------EFY 70 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH-----------HHH
Confidence 3789999999999999999999853111111111111121111111 0134578999999932 122
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI 172 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~ 172 (277)
.....++.+.+++++|+|++.+.+..+ ..++..+.... .+ .|+++|+||+|.... ..+...... ....+
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~ 141 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-SS--SPVILVGTHLDVSDE--KQRKACMSK----ITKEL 141 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TT--CEEEEEEECGGGCCH--HHHHHHHHH----HHHHT
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-CC--CcEEEEEECCCcccc--hhhHHHHHH----HHHHH
Confidence 111223345699999999984321111 23333333322 12 389999999997644 222211111 01122
Q ss_pred HhhcCCeEEEEeCCCcccccChh-HHHHHHHHHHHHHhh
Q 023779 173 LQLCDNRCVLFDNKTKDEAKGTE-QVRQLLSLVNSVIVQ 210 (277)
Q Consensus 173 ~~~~~~~~~~~~~~~~~s~~~~~-~~~~L~~~i~~~~~~ 210 (277)
....+.... ......||+.+. ++..|++.|.+.+..
T Consensus 142 ~~~~~~~~~--~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 142 LNKRGFPAI--RDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCTTSCEE--EEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcch--hheEEEecccCchhHHHHHHHHHHHHhc
Confidence 222232200 011245777774 999999999887654
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.68 E-value=4.6e-16 Score=136.80 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=100.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-----------------------------CCCCCcceeeEEEEEe
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRKAFKAS-----------------------------AGSSGVTKTCEMKTTV 64 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-----------------------------~~~~~~t~~~~~~~~~ 64 (277)
.+....++|+++|++|+|||||+|+|++....-.. ....+.|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34456689999999999999999999653210000 0012455555555443
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCcCcc
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS-------QEEETAVHRLPNLFGKNVF 137 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~-------~~~~~~~~~l~~~~~~~~~ 137 (277)
..+..+.||||||+.+ +......++..+|++++|+|+..+.. ......+..+.. .+.
T Consensus 92 -~~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v--- 155 (439)
T 3j2k_7 92 -TEKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV--- 155 (439)
T ss_pred -cCCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence 5678999999999543 33344444567899999999985432 344455554444 233
Q ss_pred CcEEEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHH
Q 023779 138 DYMIVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLS 202 (277)
Q Consensus 138 ~~~ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~ 202 (277)
.++++++||+|.... ....++..... +..++...+......-...+.||..+.|+.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 149999999997532 01223333333 5555555553100000122567888888887543
No 145
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.3e-16 Score=142.88 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+|+|.+|||||||+|+|++.... .. .+|.......+ .+.+..+.||||||.... ...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~----~~T~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~ 382 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETV-TYKNVKFNVWDVGGQDKI-----------RPL 382 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CC----CCCSSEEEEEE-ESSSCEEEEEEECCCGGG-----------SGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----CCccceeEEEE-EeCCEEEEEEECCCcHHH-----------HHH
Confidence 34589999999999999999999987632 11 22433333333 357788999999995431 222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCc--CccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGK--NVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
...++..+|++|+|+|++.+.+..+ ...++..+... ....|++||+||+|.... ....++... +. ..
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~-----~~--~~ 451 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEK-----LG--LT 451 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHH-----TT--CT
T ss_pred HHHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHH-----hc--hh
Confidence 3456788999999999984332222 11222222211 112499999999997654 233222211 00 00
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
....+.. ....+|++.+.|+++|++.|.+.+...
T Consensus 452 ~~~~~~~---~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 452 RIRDRNW---YVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp TCCSSCE---EEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred hhhcCCe---EEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 0011111 112568889999999999999887654
No 146
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=4.2e-15 Score=118.08 Aligned_cols=164 Identities=20% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
...+|+|+|.+|||||||+|.+++... +.......+.+ ..... ...++. .+.+|||+|... ...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~-i~~~~~~~~l~~~Dt~g~~~----------~~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERT-LMVDGESATIILLDMWENKG----------ENE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEE-EEETTEEEEEEEECCTTTTH----------HHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEE-EEECCeeeEEEEeecCCCcc----------hhh
Confidence 458999999999999999999997432 22211111212 11111 224554 467899998432 111
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
.....++..+|++++|+|++.+-+... ..++..+..... ....|++||+||+|.........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 222445788999999999983322222 123333333211 1124999999999975431111111 11222
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
...+..++ ++||+.+.+++++++.|.+.+..
T Consensus 173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 23343333 46888999999999999876643
No 147
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=2.9e-15 Score=118.81 Aligned_cols=175 Identities=14% Similarity=0.210 Sum_probs=97.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCch---HHHH
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSE---FVGK 91 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~---~~~~ 91 (277)
+.....+|+|+|++|||||||+|+|+|...........+.+....... +.+ .+.+|||||+.....+.. ....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~---~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE---VAD-GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE---EET-TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE---ecC-CEEEEECcCCcccccCHHHHHHHHH
Confidence 345668999999999999999999998762111111122222222221 222 678999999865322111 1111
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
.+... ......++++++++|+..+.+..+.....++.. .+ .|+++|.||+|.... ......+.. +..
T Consensus 98 ~~~~~-~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~ 164 (210)
T 1pui_A 98 ALGEY-LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VRE 164 (210)
T ss_dssp HHHHH-HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHH
T ss_pred HHHHH-HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHH
Confidence 11122 222356799999999986666555555555543 23 288999999997754 222211222 344
Q ss_pred HHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 172 ILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
++...+..... .+.|+..+.++.++++.|.+.+..
T Consensus 165 ~~~~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 165 AVLAFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHGGGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHhcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 44443322221 245777888999999999887654
No 148
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.67 E-value=1.3e-16 Score=142.77 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc--ccC------------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK--ASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~--~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (277)
+.++|+|+|++|+|||||+|+|++..... .+. ...+.|.......+ .+.+..+.|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~-~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQF-PYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEE-EETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEE-EeCCEEEEEEECC
Confidence 45899999999999999999996211000 000 00123333333333 3678899999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|+.+.. .. ...++..+|++++|+|+..+.+..+...+..+... + .|+++|+||+|....
T Consensus 91 G~~df~-------~~----~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~-~----iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFT-------ED----TYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR-H----TPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCC-------HH----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-T----CCEEEEEECTTSCCS
T ss_pred CchhHH-------HH----HHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc
Confidence 987642 12 23345677999999999977887777777666543 2 289999999998644
No 149
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.66 E-value=5.1e-15 Score=126.79 Aligned_cols=172 Identities=14% Similarity=0.085 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGM 99 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 99 (277)
+.|+|+|++|+|||||+|+|+|....... ....|.......+ .+++..+.++||||+.... ...+...+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~--~~~~T~d~~~~~i-~~~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDT--KLFTTMSPKRYAI-PINNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEE-EETTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccC--CcccccCCEEEEE-EECCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence 45999999999999999999987753222 1223322222222 3567889999999985421 1222233333333
Q ss_pred cCCCccEEEEEEeCCCCC--CHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc
Q 023779 100 AKDGIHAFLVVFSVTNRF--SQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC 176 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 176 (277)
.+..+|++++|+|++... .... ..+...+......+ .|+++|.||+|.... . ....+.. +..+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~--~-~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKING--D-LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCS--C-HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCc--h-HHHHHHH-----HHHHHHHh
Confidence 456789999999998432 1111 12234444432122 389999999998754 2 2221111 22222332
Q ss_pred -CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 177 -DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 177 -~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
...... .+.|+..+.+++.|++.|...+...
T Consensus 324 ~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 324 YSPIFDV----IPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCEEEE----EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCcE----EEEECCCCcCHHHHHHHHHHHhccc
Confidence 211111 3568888999999999999988764
No 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=7.3e-16 Score=120.60 Aligned_cols=129 Identities=11% Similarity=0.124 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+++|++|||||||+|+|++......... ...+... .+.+..+.+|||||....... +..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-~~~~~~~------~~~~~~~~l~Dt~G~~~~~~~-------~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA------DYDGSGVTLVDFPGHVKLRYK-------LSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-CCCceee------eecCCeEEEEECCCCchHHHH-------HHHH
Confidence 4568999999999999999999998764221111 1111111 125567889999998764321 1222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhC-----cCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFG-----KNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
+......+|++++|+|++ .-...-.....++..... .....|+++|+||+|.... ..+.....
T Consensus 112 ~~~~~~~~~~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDST-VDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA--RPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETT-CCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred HHhhcccCCEEEEEEECC-CCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC--CCHHHHHH
Confidence 222234569999999997 111111222223333221 0112499999999998766 44544443
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.64 E-value=7.5e-16 Score=134.38 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=103.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC-------Ccccc-C-------CCCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK-------AFKAS-A-------GSSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~-------~~~~~-~-------~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
.....+|+++|++|+|||||+|+|++.. .+... . ...+.|......... ..+..+.||||||+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChH
Confidence 3456899999999999999999998630 00000 0 012334433333222 456889999999976
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~ 159 (277)
+. ......++..+|++++|+|++.+.......++..+... +. | +++++||+|..... ..++.
T Consensus 87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~i----p~iivviNK~Dl~~~~-~~~~~ 149 (405)
T 2c78_A 87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-GV----PYIVVFMNKVDMVDDP-ELLDL 149 (405)
T ss_dssp GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCCCH-HHHHH
T ss_pred HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC----CEEEEEEECccccCcH-HHHHH
Confidence 41 22222334677999999999867666677776666553 32 5 88999999987431 22333
Q ss_pred HhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccChhH------------------HHHHHHHHHHHHh
Q 023779 160 FLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQ------------------VRQLLSLVNSVIV 209 (277)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~------------------~~~L~~~i~~~~~ 209 (277)
.... +.+++..++. .++ ..|++.+.+ +..|++.|...++
T Consensus 150 ~~~~-----~~~~l~~~~~~~~~~~~i------~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 150 VEME-----VRDLLNQYEFPGDEVPVI------RGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp HHHH-----HHHHHHHTTSCTTTSCEE------ECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHH-----HHHHHHHhcccccCCCEE------EccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 3333 5556655542 222 356666665 7778888877665
No 152
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.8e-15 Score=128.56 Aligned_cols=171 Identities=17% Similarity=0.219 Sum_probs=83.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC-----CCcceeeEEEEEe-eeCCc--eEEEEeCCCCCCCCCCc----
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGS-----SGVTKTCEMKTTV-LKDGQ--VVNVIDTPGLFDLSAGS---- 86 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~-~~~~~--~~~liDtpG~~~~~~~~---- 86 (277)
..+|+|+|++|+|||||+|+|++...+..+..+ ...|......... ...+. .+.+|||||+++.....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 478999999999999999999887765443211 1123322222111 12333 58999999996643211
Q ss_pred ---hHHHHHHHHHHhhc---------CCCccEEEEEEeC-CCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 87 ---EFVGKEIVKCLGMA---------KDGIHAFLVVFSV-TNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 87 ---~~~~~~~~~~~~~~---------~~~~~~~l~v~d~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
..+...+..++... ..++|+++|+++. ..++...+..++..+ ... .|+|+|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence 12222222333221 1345788888886 357777665544443 223 399999999998765
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhH---HHHHHHHHHHHH
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQ---VRQLLSLVNSVI 208 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~---~~~L~~~i~~~~ 208 (277)
..+..+... +..++...+.+++ .+|+..+.+ +..+...|...+
T Consensus 190 -~ev~~~k~~-----i~~~~~~~~i~~~------~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 190 -KERERLKKR-----ILDEIEEHNIKIY------HLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp -HHHHHHHHH-----HHHHTTCC-CCSC------CCC---------CHHHHHHHHHTC
T ss_pred -HHHHHHHHH-----HHHHHHHCCCCEE------eCCCcCCCcchhHHHHHHHHHhcC
Confidence 445444333 4445544444433 334443433 444555554444
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.64 E-value=4.3e-15 Score=129.15 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=104.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC------ccc----c----CCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA------FKA----S----AGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
..+|+++|++|+|||||+++|++... +.. . ....+.|......... ..+..+.||||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~---- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHA---- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHH----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChH----
Confidence 47999999999999999999986310 000 0 0012344444333222 456789999999943
Q ss_pred CchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHhcc
Q 023779 85 GSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFLGH 163 (277)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l~~ 163 (277)
++...+..++..+|++++|+|++.+........+..+... +. | +++++||+|..... ..++.....
T Consensus 78 -------~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~v----p~iivviNK~Dl~~~~-~~~~~~~~~ 144 (397)
T 1d2e_A 78 -------DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI-GV----EHVVVYVNKADAVQDS-EMVELVELE 144 (397)
T ss_dssp -------HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CCEEEEEECGGGCSCH-HHHHHHHHH
T ss_pred -------HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc-CC----CeEEEEEECcccCCCH-HHHHHHHHH
Confidence 3444555567889999999999966767666666665542 32 5 78999999987431 223333333
Q ss_pred cCCchHHHHHhhcCC-----eEEEEeCCCcccccChh---------H-HHHHHHHHHHHHhh
Q 023779 164 ECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTE---------Q-VRQLLSLVNSVIVQ 210 (277)
Q Consensus 164 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~---------~-~~~L~~~i~~~~~~ 210 (277)
+.+++..++. .++ ..|+..+. + +..|++.|...++.
T Consensus 145 -----~~~~l~~~~~~~~~~~~i------~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 145 -----IRELLTEFGYKGEETPII------VGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp -----HHHHHHHTTSCTTTSCEE------ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred -----HHHHHHHcCCCcccCcEE------EeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5556665552 222 34555443 4 88999999887754
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.63 E-value=1.5e-15 Score=135.35 Aligned_cols=156 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-cc----------------------------ccCCCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA-FK----------------------------ASAGSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (277)
...+|+++|++|+|||||+|+|++... +. ......+.|.......+. ..+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCC
Confidence 347999999999999999999975411 00 000112445555444443 567
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEE
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
..+.||||||+.+ +......++..+|++++|+|++.+ +.......+..+.. .+. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8899999999753 223333345678999999999843 33445555454444 332 2799
Q ss_pred EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHH
Q 023779 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVR 198 (277)
Q Consensus 142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~ 198 (277)
||+||+|........+++.... +..++...+. ....+ +.|+..+.|+.
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i----~iSA~~g~gi~ 226 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINWV----PISGFSGEGVY 226 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEEE----ECCSSSCTTSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceEE----EEeeecCCCcc
Confidence 9999999875311344444444 5556555443 12221 34666666665
No 155
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.63 E-value=1.1e-15 Score=131.39 Aligned_cols=150 Identities=15% Similarity=0.194 Sum_probs=99.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|++++|||||+++|+ ..+.|......... +.+..+.+|||||..+. ...+...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f-------~~~~~~~---- 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT-------LKSLITA---- 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC-------HHHHHHH----
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH-------HHHHHHH----
Confidence 89999999999999999998 12334444444333 56778999999998753 1223333
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EEEEe-CCCCCCcccccHHHHhcccCCchHHHHHhhcCC
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IVVFT-GGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN 178 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-ivv~n-k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 178 (277)
+..+|++++|+| ...........+..+... +. |. ++++| |+|. .. ..++..... +++++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDLL-GF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-TC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-CC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 356799999999 756666666666666543 43 55 88888 9997 43 333333333 5555544331
Q ss_pred -eEEEEeCCCc--ccccC---hhHHHHHHHHHHHHHhh
Q 023779 179 -RCVLFDNKTK--DEAKG---TEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 -~~~~~~~~~~--~s~~~---~~~~~~L~~~i~~~~~~ 210 (277)
.+..+ . .||.. +.++++|++.|...++.
T Consensus 147 ~~~~ii----~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWECI----SLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCEEE----ECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceEEE----ecccccccCcCCCCHHHHHHHHHhhccc
Confidence 11111 3 57777 89999999998887654
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=130.97 Aligned_cols=166 Identities=16% Similarity=0.052 Sum_probs=94.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC--ceEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG--QVVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
.+..+|+++|++|+|||||++++++..+..... .|+..........++ ..+.+|||||... +.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YD 92 (204)
Confidence 456899999999999999999998765422211 111111111111233 3466999999543 22
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH--HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhccc-----CCc
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE--ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHE-----CPK 167 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~-----~~~ 167 (277)
.....++..+|++++|+|++.+.+..+ ..++..+..... ..|+++|+||+|.... ....+.+... ...
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
Confidence 233334677899999999984333333 234444444322 2489999999997654 2111111100 000
Q ss_pred hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
....+....+. ......|++.+.+++++++.|.+.
T Consensus 168 ~~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 168 QGLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 01122222221 122367888999999999887654
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=2.4e-15 Score=132.31 Aligned_cols=158 Identities=12% Similarity=0.117 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC--ccc------------cCC-----------------CCCcceeeEEEEEee
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA--FKA------------SAG-----------------SSGVTKTCEMKTTVL 65 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~--~~~------------~~~-----------------~~~~t~~~~~~~~~~ 65 (277)
...++|+++|++|+|||||+|+|++... +.. +.. ..+.|.........
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~- 100 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS- 100 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-
Confidence 3458999999999999999999985431 100 000 01334443333332
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
..+..+.||||||..+. ...+. .++..+|++++|+|++.+........+..+... +. +|+++|+|
T Consensus 101 ~~~~~~~iiDtpGh~~f-------~~~~~----~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~---~~iIvviN 165 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQY-------TRNMA----TGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GI---KHIVVAIN 165 (434)
T ss_dssp CSSEEEEEEECCCSGGG-------HHHHH----HHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC---CEEEEEEE
T ss_pred cCCceEEEEECCChHHH-------HHHHH----HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEE
Confidence 46778999999996531 12222 234678999999999977766666666655543 32 26999999
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcC--Ce-EEEEeCCCcccccChhHHHH
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NR-CVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~s~~~~~~~~~ 199 (277)
|+|........+...... +..++...+ .. +.. .+.|++.+.++.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~----i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF----VPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE----EECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE----EEEeccCCCCccc
Confidence 999875311233334444 666666666 21 222 1346666677665
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.63 E-value=1.2e-17 Score=148.97 Aligned_cols=161 Identities=14% Similarity=0.183 Sum_probs=105.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
.++|+++|++|+|||||+++|++..+... ...+.|............+..++||||||..++.. ...
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence 47899999999999999999987654222 22344544444444323566899999999765322 223
Q ss_pred hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHH---Hhh
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEI---LQL 175 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~---~~~ 175 (277)
.++..+|++++|+|++.+....+...+..+... +. |++|++||+|........+... +... ...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~v--PiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~ 137 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---HV--PIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED 137 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---TC--CEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---CC--cEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence 356778999999999977777777666655542 22 8999999999764311111111 1111 111
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
++..+. ..+.|++.+.++++|++.|..++.
T Consensus 138 ~~~~~~----iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 138 YGGDVQ----AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSSEE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred cCCCce----EEEEECCCCCCchhHHHHHHHhhh
Confidence 111111 235688899999999999988764
No 159
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.61 E-value=2.7e-14 Score=132.20 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=117.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC--CccccCC--------------CCCcceeeEEEEEeeeCC-------ceEE
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKASAG--------------SSGVTKTCEMKTTVLKDG-------QVVN 72 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~~--------------~~~~t~~~~~~~~~~~~~-------~~~~ 72 (277)
..+.++|+|+|+.|+|||||+++|+... ....+.. ..+.|......... +.+ ..+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRIN 85 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEE
Confidence 3456899999999999999999996421 1000000 12334433333333 444 7899
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
||||||..++ ..+...++ ..+|++|+|+|++.+........+..+... + .|+++++||+|....
T Consensus 86 liDTPG~~df-------~~~~~~~l----~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDF-------TIEVERSM----RVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccch-------HHHHHHHH----HHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence 9999998753 12333333 456999999999976666666666555432 2 289999999997654
Q ss_pred ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh-cCCC-----CCChHHHHHHHH
Q 023779 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ-NGGQ-----PYTDELKRGATE 226 (277)
Q Consensus 153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~-~~~~-----~~~~~~~~~~~~ 226 (277)
.+...++. ++.. ++.....+.-+...+ ....++-+++..-...... ..+. ..+.++.+...+
T Consensus 150 ---~~~~~~~~-----l~~~---l~~~~~~~~~Pi~~~-~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 217 (704)
T 2rdo_7 150 ---NFLKVVNQ-----IKTR---LGANPVPLQLAIGAE-EHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANE 217 (704)
T ss_pred ---cHHHHHHH-----HHHH---hCCCceeEEcccccc-ccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHH
Confidence 34444443 4433 344444444333221 1122333333221111111 0011 133444444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 023779 227 LRDKKAEVDSLKEYSKREISKLMGQMQESYEDRIKRMA 264 (277)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (277)
. +.+.++.+.+.+++.++++.+..+...++..+.+.
T Consensus 218 ~--~~~l~e~~ae~dd~l~e~~l~~~~l~~~~l~~~l~ 253 (704)
T 2rdo_7 218 W--HQNLIESAAEASEELMEKYLGGEELTEAEIKGALR 253 (704)
T ss_pred H--HHHHHHHHHhcCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3 44555566666677777776654433333333333
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.61 E-value=4.7e-15 Score=125.78 Aligned_cols=166 Identities=16% Similarity=0.073 Sum_probs=100.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+++|.+|+|||||++.+++...... ...|+..........++.. +.+|||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGE----YIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCS----CCCCSEEEEEEEEEETTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcc----cCCcccceeEEEEEECCEEEEEEEEeCCCchhh-----------hH
Confidence 348999999999999999999986654222 1222222222222345554 559999996532 12
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHHH--HHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcc----c-CCch
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEEE--TAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGH----E-CPKP 168 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~----~-~~~~ 168 (277)
....++..+|++++|+|++.+.+..+. .++..+..... ..|+++|+||+|.... ......+.. . ....
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 293 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 293 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc--cchhhhccccccccccHHH
Confidence 233456789999999999843333332 34455555433 2499999999997543 111111110 0 0111
Q ss_pred HHHHHhhcCC-eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 169 LKEILQLCDN-RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 169 ~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+....+. .++ .+|++.+.++.++++.|.+.+.
T Consensus 294 ~~~~~~~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 294 GLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEE------EecCCCCcCHHHHHHHHHHHHh
Confidence 3344445454 333 4678888999999999987764
No 161
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5e-15 Score=134.88 Aligned_cols=159 Identities=15% Similarity=0.153 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccc--------------cCC---------------CCCcceeeEEEEEeeeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKA--------------SAG---------------SSGVTKTCEMKTTVLKD 67 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~--------------~~~---------------~~~~t~~~~~~~~~~~~ 67 (277)
...++|+++|++|+|||||+|+|++....-. |.. ..+.|.......+. ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~-~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-TH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE-CS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe-cC
Confidence 3458999999999999999999996532100 000 02445544444333 56
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcE
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYM 140 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~ 140 (277)
+..+.||||||+.+ +......++..+|++|+|+|++.+ +.......+..+.. .+. .|+
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78899999999754 445555667889999999999832 22334444444443 232 269
Q ss_pred EEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHH
Q 023779 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQL 200 (277)
Q Consensus 141 ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L 200 (277)
+||+||+|........++..... +..++..++. .... .+.||..+.|+.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~~~~~----i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW----VPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCEE----EECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhcccccCccE----EeeecccCCCcccc
Confidence 99999999875311334444444 5556555553 1111 14566677777643
No 162
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=7.7e-15 Score=132.06 Aligned_cols=118 Identities=18% Similarity=0.202 Sum_probs=86.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC------------------Cccc--cCCCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK------------------AFKA--SAGSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~------------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (277)
+.++|+|+|+.++|||||..+|+-.. +.+. .....+.|.......+. |++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence 45899999999999999999986110 0000 01122455555455444 899999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|+.|+. .+..+++..+ |+.|+|+|+..+........++.+.+. +- |.++++||+|....
T Consensus 109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~-~l----p~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMR-AT----PVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHT-TC----CEEEEEECTTSCCC
T ss_pred CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHh-CC----ceEEEEecccchhc
Confidence 998875 4777777766 999999999989999998888877764 33 89999999997654
No 163
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.60 E-value=1e-14 Score=114.20 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=90.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIV 94 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~ 94 (277)
...+|+|+|.+|||||||+|.+++... +.......+.+ ..... ...++. .+.+|||+|...... .+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~l~~~Dt~~~~~~~~-------~~- 73 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERT-LMVDGESATIILLDMWENKGENE-------WL- 73 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEE-EEETTEEEEEEEECCCCC----C-------TT-
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEE-EEECCeEEEEEEEEeccCcchhh-------hH-
Confidence 348999999999999999999986322 22211111111 11111 224554 457899998543100 01
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHH
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL 173 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~ 173 (277)
...++..+|++++|+|++.+-+... ..++..+..... ....|+++|+||+|.........++ ...+.
T Consensus 74 --~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a 141 (192)
T 2cjw_A 74 --HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRXREVSVSE---------GRAXA 141 (192)
T ss_dssp --GGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred --HHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCeEEEEEechhhhccccccHHH---------HHHHH
Confidence 1122345699999999984322222 233344444321 1123899999999975431011111 11222
Q ss_pred hhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 174 QLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 174 ~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
...+..++ ++||+.+.++.++++.+.+.+.
T Consensus 142 ~~~~~~~~------e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 142 VVFDXKFI------ETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhCCceE------EeccccCCCHHHHHHHHHHHHH
Confidence 23333333 5688889999999999887664
No 164
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.60 E-value=9.7e-15 Score=116.46 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=73.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
....+|+|+|++|+|||||+|+|++........ ....+... .+....+.+|||||.... ...+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~-~~~~~~~~------~~~~~~~~l~Dt~G~~~~-------~~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV-SQEPLSAA------DYDGSGVTLVDFPGHVKL-------RYKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCC-CSSCEEET------TGGGSSCEEEECCCCGGG-------THHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeee-ecCceEEE------EeeCceEEEEECCCcHHH-------HHHHHHH
Confidence 456899999999999999999999776422211 11112111 124567899999997542 1223333
Q ss_pred HhhcCCCccEEEEEEeCC---CCCCHHHHHHHHHHHHHhC-cCccCcEEEEEeCCCCCCc
Q 023779 97 LGMAKDGIHAFLVVFSVT---NRFSQEEETAVHRLPNLFG-KNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~---~~~~~~~~~~~~~l~~~~~-~~~~~~~ivv~nk~D~~~~ 152 (277)
+......+|++++|+|++ ..+......+...+..... .....|+++|+||+|....
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 332223469999999998 2333333333333322110 0112499999999998765
No 165
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.59 E-value=1.2e-14 Score=127.92 Aligned_cols=154 Identities=19% Similarity=0.243 Sum_probs=90.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-c------------c---------------CCCCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-A------------S---------------AGSSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~-~------------~---------------~~~~~~t~~~~~~~~~~~~~ 68 (277)
..++|+++|+.|+|||||+++|++.. .+. . | ....+.|.......+. +.+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCC
Confidence 45899999999999999999998531 110 0 0 0012344444433333 567
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCcCccCcEE
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-------FSQEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
..+.||||||+.+ +......++..+|++++|+|+... +.......+..+.. .+. .|++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeEE
Confidence 8899999999765 233344467889999999999843 22334444444443 232 2699
Q ss_pred EEEeCCCCCCcc--cccHHHHhcccCCchHHHHHhhcCC-----eEEEEeCCCcccccChhHHH
Q 023779 142 VVFTGGDDLEDH--EKTLEDFLGHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGTEQVR 198 (277)
Q Consensus 142 vv~nk~D~~~~~--~~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~ 198 (277)
|++||+|..... ...++..... +..++...+. .++ +.|+..+.++.
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i------~iSA~~g~~v~ 201 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFV------PVVAPSGDNIT 201 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEE------ECBTTTTBTTT
T ss_pred EEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEE------EeecccCcccc
Confidence 999999987520 1233444444 6666666552 233 34566666664
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.59 E-value=1.1e-14 Score=114.60 Aligned_cols=161 Identities=16% Similarity=0.159 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCc--eEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQ--VVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
..+|+|+|++|||||||++.|+|........ ...+.......+ ..++. .+.+|||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--~t~~~~~~~~~i-~~~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--STIGVEFATRSI-QVDGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEE-EETTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEE-EECCEEEEEEEEECCCchhhhh-----------h
Confidence 4799999999999999999999876422211 111122212222 24554 467899999543211 1
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhh
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQL 175 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~ 175 (277)
...++..++++++|+|+....+..+ ..++..+...... ..|+++|+||+|........... .+.+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTDE---------ARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHHH---------HHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHHH---------HHHHHHH
Confidence 1112356799999999983322222 2233333332222 24899999999975431111111 3344444
Q ss_pred cCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 176 CDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 176 ~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
.+.. .+. +|+..+.++.++++.|...+..
T Consensus 140 ~~~~--~~d----~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NNLS--FIE----TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTCE--EEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCe--EEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence 4433 233 5777788999999988876643
No 167
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.58 E-value=3e-15 Score=138.43 Aligned_cols=128 Identities=24% Similarity=0.311 Sum_probs=83.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc-------CC-------CCCcceeeEEEEEeeeCCceEEEEeCCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK--AFKAS-------AG-------SSGVTKTCEMKTTVLKDGQVVNVIDTPGL 79 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~-------~~-------~~~~t~~~~~~~~~~~~~~~~~liDtpG~ 79 (277)
..+.++|+|+|++|+|||||+|+|++.. ....+ .. ..+.|........ .+.+..+.||||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~-~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTA-AWEGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEE-EETTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEE-EECCeeEEEEECcCC
Confidence 3456899999999999999999998311 10000 00 1223333333333 367889999999999
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHH
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLED 159 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~ 159 (277)
.+.. .....++. .+|++|+|+|+..+.+..+...+..+... + .|+++|+||+|.... .+..
T Consensus 86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~-~----~p~ilviNK~Dl~~~---~~~~ 146 (693)
T 2xex_A 86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY-G----VPRIVFVNKMDKLGA---NFEY 146 (693)
T ss_dssp SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC---CHHH
T ss_pred cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc-C----CCEEEEEECCCcccc---chHH
Confidence 7642 23344443 35999999999977887777777766552 3 289999999997654 3444
Q ss_pred Hhcc
Q 023779 160 FLGH 163 (277)
Q Consensus 160 ~l~~ 163 (277)
.++.
T Consensus 147 ~~~~ 150 (693)
T 2xex_A 147 SVST 150 (693)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=3.2e-14 Score=123.60 Aligned_cols=171 Identities=18% Similarity=0.229 Sum_probs=81.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCC----CCcceeeEEEEEee-eCC--ceEEEEeCCCCCCCCCCc---h
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGS----SGVTKTCEMKTTVL-KDG--QVVNVIDTPGLFDLSAGS---E 87 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~-~~~--~~~~liDtpG~~~~~~~~---~ 87 (277)
-.++|+|+|++|+|||||+|+|+|...+..+... ...|.......... ..+ ..+++|||||++...... .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 3478999999999999999999998764333110 11222211111111 112 258899999998642111 1
Q ss_pred HHHHHHHHHH-----------hhcC--CCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 88 FVGKEIVKCL-----------GMAK--DGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 88 ~~~~~~~~~~-----------~~~~--~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
.+...+...+ ...+ +.+|++||++..+ .++...+..++..+.. . .|+|+|+||+|....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~- 182 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP- 182 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH-
Confidence 1111111111 1122 3355677777765 4788777655555542 2 389999999998866
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHH
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSV 207 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~ 207 (277)
..+..+... +...+...+.+++.+ |+....++..++..+...
T Consensus 183 -~ev~~~k~~-----i~~~~~~~~i~~~~~------sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 183 -EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDR 224 (418)
T ss_dssp -HHHHHHHHH-----HHHHHHHHTCCCCCC------C-----------------
T ss_pred -HHHHHHHHH-----HHHHHHHcCCeEEeC------CCCCCcCHHHHHHHHHhh
Confidence 556655554 555555555554432 333445555555555443
No 169
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.58 E-value=1.6e-14 Score=130.72 Aligned_cols=164 Identities=18% Similarity=0.196 Sum_probs=95.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccc-c-----------CCCCCcceeeEEEEEeee--C--CceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKA-S-----------AGSSGVTKTCEMKTTVLK--D--GQVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~--~~~~~liDtpG~~ 80 (277)
+.++|+|+|+.|+|||||+++|+.... ... . ....+.|........... + +..+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 347999999999999999999974210 000 0 001233433333333211 2 2578999999976
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~ 160 (277)
++ ..++...+.. +|++++|+|++.+.+..+...+..+... + .|+++|+||+|.... ..+..
T Consensus 83 dF-------~~ev~~~l~~----aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a---~~~~v 143 (599)
T 3cb4_D 83 DF-------SYEVSRSLAA----CEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAA---DPERV 143 (599)
T ss_dssp GG-------HHHHHHHHHH----CSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTC---CHHHH
T ss_pred HH-------HHHHHHHHHH----CCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCcccc---cHHHH
Confidence 52 2344444443 4999999999877777666655544432 2 289999999997654 23333
Q ss_pred hcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
... +.+ .++.. .......|++.+.++++|++.|...++..
T Consensus 144 ~~e-----i~~---~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 144 AEE-----IED---IVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHH-----HHH---HTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHH-----HHH---HhCCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 322 332 22321 01233568888999999999999887653
No 170
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.57 E-value=1.2e-14 Score=131.62 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=76.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee-----------------eCCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL-----------------KDGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------~~~~~~~liDtpG~~~ 81 (277)
.++|+++|++|+|||||+++|++..+.... +.+.|.+........ +....+.||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 478999999999999999999875432111 112222221111110 1122589999999876
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE 151 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~ 151 (277)
+... ...++..+|++++|+|++.++.......+..+... + .|+++++||+|...
T Consensus 83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~-~----vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY-R----TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C----CeEEEEeccccccc
Confidence 5321 12345678999999999977877777777766652 2 28999999999864
No 171
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.57 E-value=1.9e-14 Score=130.08 Aligned_cols=164 Identities=16% Similarity=0.226 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC--Ccccc-----------CCCCCcceeeEEEEEeee--CC--ceEEEEeCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK--AFKAS-----------AGSSGVTKTCEMKTTVLK--DG--QVVNVIDTPGLF 80 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~-----------~~~~~~t~~~~~~~~~~~--~~--~~~~liDtpG~~ 80 (277)
+.++|+++|+.|+|||||+++|+... ....+ ....+.|........... ++ ..+.||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 45799999999999999999997421 00000 001223333222222211 22 568899999987
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHH
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDF 160 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~ 160 (277)
++ ..++...+ ..+|++++|+|++.+.+..+...+..+... + .|+++++||+|.... ..+..
T Consensus 85 dF-------~~ev~r~l----~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a---~~~~v 145 (600)
T 2ywe_A 85 DF-------SYEVSRAL----AACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSA---DVDRV 145 (600)
T ss_dssp GG-------HHHHHHHH----HTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTC---CHHHH
T ss_pred hH-------HHHHHHHH----HhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCcccc---CHHHH
Confidence 52 23444444 355999999999977777776665554432 2 289999999997654 23322
Q ss_pred hcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 161 LGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
... +...++... ......|++.+.++.+|++.|.+.++..
T Consensus 146 ~~e--------l~~~lg~~~---~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 KKQ--------IEEVLGLDP---EEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHH--------HHHTSCCCG---GGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHH--------HHHhhCCCc---ccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 222 222223210 1234568899999999999998887653
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.57 E-value=8.6e-15 Score=135.32 Aligned_cols=122 Identities=21% Similarity=0.253 Sum_probs=79.4
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCC--CccccC--------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779 14 SPSNGERTVVLLGRTGNGKSATGNSILGRK--AFKASA--------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (277)
Q Consensus 14 ~~~~~~~~i~lvG~~g~GKStlin~l~~~~--~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (277)
.+....++|+|+|++|+|||||+++|+... ....+. ...+.|........ .+.+..+.|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~-~~~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTC-FWKDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEE-EETTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEE-EECCeEEEEEECc
Confidence 344567899999999999999999998211 000000 01233443333333 3678899999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|+.+. ......++. .+|++++|+|+..+.+..+...+..+... + .|+++|+||+|....
T Consensus 86 G~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY-K----VPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCEEEEEECTTSTTC
T ss_pred Cccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCcccC
Confidence 98753 233444443 45999999999977777777766665542 2 289999999998754
No 173
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.56 E-value=6.1e-15 Score=132.86 Aligned_cols=137 Identities=20% Similarity=0.296 Sum_probs=81.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEe--------------------------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTV-------------------------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 64 (277)
....+|+|+|.+|+|||||+|+|+|..+.....+..+.|.........
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 456899999999999999999999987631112222222221110000
Q ss_pred ----eeCC---ceEEEEeCCCCCCCCCCchHHHHH--HHHHHhhcCCCccEEEEEEeCCC-CCCHHHHHHHHHHHHHhCc
Q 023779 65 ----LKDG---QVVNVIDTPGLFDLSAGSEFVGKE--IVKCLGMAKDGIHAFLVVFSVTN-RFSQEEETAVHRLPNLFGK 134 (277)
Q Consensus 65 ----~~~~---~~~~liDtpG~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~~~~~l~~~~~~ 134 (277)
.+.+ ..+.||||||+.+..... +... +......++..+|++++|+|++. .+...+..++..+...
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 0000 368999999998632110 0000 12222223346699999999984 4566666666555432
Q ss_pred CccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 135 NVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 135 ~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
. .|+++|+||+|.... ..+...+.
T Consensus 218 ~--~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 218 E--DKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp G--GGEEEEEECGGGSCH--HHHHHHHH
T ss_pred C--CCEEEEEECCCccCH--HHHHHHHH
Confidence 1 389999999998866 45555444
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=8.7e-14 Score=132.12 Aligned_cols=164 Identities=18% Similarity=0.199 Sum_probs=102.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC------cc----c----cCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA------FK----A----SAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~------~~----~----~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
....+|+++|++++|||||+++|++... +. . .....+.|......... ..+..+.||||||..
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHe-- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHA-- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChH--
Confidence 4558999999999999999999986310 00 0 00112333333222222 456789999999943
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EEEEEeCCCCCCcccccHHHHh
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MIVVFTGGDDLEDHEKTLEDFL 161 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ivv~nk~D~~~~~~~~l~~~l 161 (277)
++......++..+|++++|+|+..+........+..+... +. | ++|++||+|..... ..++...
T Consensus 371 ---------dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d~-e~le~i~ 435 (1289)
T 3avx_A 371 ---------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDDE-ELLELVE 435 (1289)
T ss_dssp ---------HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCCH-HHHHHHH
T ss_pred ---------HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccch-hhHHHHH
Confidence 3445555567899999999999866666666666666543 33 5 78999999987531 2233333
Q ss_pred cccCCchHHHHHhhcCC-----eEEEEeCCCcccccCh--------hHHHHHHHHHHHHHh
Q 023779 162 GHECPKPLKEILQLCDN-----RCVLFDNKTKDEAKGT--------EQVRQLLSLVNSVIV 209 (277)
Q Consensus 162 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~--------~~~~~L~~~i~~~~~ 209 (277)
.. +..++...+. .++ +.|+..+ .++..|++.|...++
T Consensus 436 eE-----i~elLk~~G~~~~~vp~I------pvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 436 ME-----VRELLSQYDFPGDDTPIV------RGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HH-----HHHHHHHTTSCTTTCCEE------ECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HH-----HHHHHHhccccccceeEE------EEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 33 5556665542 233 3455555 578888888887664
No 175
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.56 E-value=3.1e-15 Score=129.50 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=45.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceee--EEEEE------------------eeeC---CceEEEEeC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTC--EMKTT------------------VLKD---GQVVNVIDT 76 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~------------------~~~~---~~~~~liDt 76 (277)
.+|+|+|.+|||||||+|+|++... .... ...+|... ..... ..++ ...+.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~-~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIAN-YPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccC-CCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 4799999999999999999998762 1111 11122211 11100 0112 246899999
Q ss_pred CCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC
Q 023779 77 PGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN 115 (277)
Q Consensus 77 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~ 115 (277)
||+....... ..+...+...++.+|++++|+|+..
T Consensus 79 pG~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTC
T ss_pred CCcccchhhh----hhHHHHHHHHHhcCCEEEEEEeccc
Confidence 9986532111 1122222345688999999999984
No 176
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.55 E-value=2e-14 Score=117.64 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred CccEEEEEEeCCCC--CCHHH-HHHHHHHHHH-hCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhc-C
Q 023779 103 GIHAFLVVFSVTNR--FSQEE-ETAVHRLPNL-FGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLC-D 177 (277)
Q Consensus 103 ~~~~~l~v~d~~~~--~~~~~-~~~~~~l~~~-~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~ 177 (277)
++|++++|+|++.+ .+... ..++..+... .... .|++||+||+|.... ..+ .. ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v----~~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYI----RD-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHH----HH-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHH----HH-----HHHHHHhcCC
Confidence 58999999999844 44443 2344444433 1122 399999999997543 222 12 33343332 3
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..++ .+|++.+.++.++++.|.+.+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 3333 468888899999999987765
No 177
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.55 E-value=1.9e-14 Score=129.92 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=92.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEE----EEe---eeCCceEEEEeCCCCCCCCCCchHH
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMK----TTV---LKDGQVVNVIDTPGLFDLSAGSEFV 89 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~---~~~~~~~~liDtpG~~~~~~~~~~~ 89 (277)
....+|+|+|.+|||||||+|+|++..+........+.+...... ... ...+..+.+|||||.......
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~---- 114 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS---- 114 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT----
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH----
Confidence 355899999999999999999999876422111111111111000 011 012467999999995543221
Q ss_pred HHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchH
Q 023779 90 GKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPL 169 (277)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~ 169 (277)
.. .+ +.++|++++|+|++ .. .....++..+..... + .|++||+||+|.........+. +
T Consensus 115 ~~---~~----l~~~d~ii~V~D~s-~~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~~---------~ 173 (535)
T 3dpu_A 115 HQ---FF----MTRSSVYMLLLDSR-TD-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQKK---------I 173 (535)
T ss_dssp CH---HH----HHSSEEEEEEECGG-GG-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHHH---------H
T ss_pred HH---HH----ccCCcEEEEEEeCC-Cc-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHHH---------H
Confidence 11 11 23569999999998 33 233456666666532 2 4999999999986541112211 2
Q ss_pred HHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhhc
Q 023779 170 KEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQN 211 (277)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~ 211 (277)
+......+..++ ..|++.+.|+++|++.|...+...
T Consensus 174 ~~~~~~~~~~~~------~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 174 NERFPAIENRFH------RISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HHHCGGGTTCEE------ECCC-----CTTHHHHHHHHHTCT
T ss_pred HHHHHhcCCceE------EEecCcccCHHHHHHHHHHHHhcc
Confidence 333334444444 468888899999999999988653
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.55 E-value=2.6e-16 Score=139.39 Aligned_cols=161 Identities=14% Similarity=0.184 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
+.++|+++|++++|||||+++|++..+.... ..+.|.....+... +++..++||||||+.++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHH-----------H
Confidence 3478999999999999999999864432111 12334443333332 56778999999998764321 1
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
...+..+|++++|+|+..+........+..+... +. |+++++||+|........+...+.. ...+.+..+
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~-~v----PiIVviNKiDl~~~~~~~v~~~l~~-----~~~~~~~~~ 138 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA-QV----PVVVAVNKIDKPEADPDRVKNELSQ-----YGILPEEWG 138 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT-TC----CEEEEEECSSSSTTCCCCTTCCCCC-----CCCCTTCCS
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc-Cc----eEEEEEEeccccccCHHHHHHHHHH-----hhhhHHHhC
Confidence 2345678999999999865555555555555432 32 8999999999864311122111111 000001112
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHH
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNS 206 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~ 206 (277)
..+.. .+.|++.+.++++|++.|..
T Consensus 139 ~~~~~----v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 139 GESQF----VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSCEE----EECCTTTCTTCTTHHHHTTT
T ss_pred CCccE----EEEeeeeccCcchhhhhhhh
Confidence 11111 25688888999999998764
No 179
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.54 E-value=3.8e-14 Score=125.30 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=85.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-------------ccCC---------------CCCcceeeEEEEEeeeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK-AFK-------------ASAG---------------SSGVTKTCEMKTTVLKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~-------------~~~~---------------~~~~t~~~~~~~~~~~~~ 68 (277)
..++|+++|++|+|||||+|+|++.. .+. .|.. ..+.|.......+. ..+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCC
Confidence 34899999999999999999998541 110 0000 12345444444333 567
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCcCccCcEE
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQ-------EEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~i 141 (277)
..+.||||||+.+ +......++..+|++++|+|++.+... .....+..+.. .+. .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999653 334445567889999999999832211 23333333333 232 2599
Q ss_pred EEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 142 VVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 142 vv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
|++||+|........++..... +..++...+
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g 180 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVG 180 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcC
Confidence 9999999873211334444444 555655554
No 180
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.54 E-value=2e-13 Score=116.31 Aligned_cols=111 Identities=11% Similarity=0.093 Sum_probs=63.7
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHH-HHhCcCccCcEEEEE
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLP-NLFGKNVFDYMIVVF 144 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ivv~ 144 (277)
+.+..+.||||||+.+. . .. . ...+|++++|+|++... . +..+. ...+ .|.++|+
T Consensus 146 ~~~~~i~liDTpG~~~~----~---~~---~----~~~aD~vl~Vvd~~~~~---~---~~~l~~~~~~----~p~ivv~ 201 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQS----E---TE---V----ARMVDCFISLQIAGGGD---D---LQGIKKGLME----VADLIVI 201 (341)
T ss_dssp HTTCSEEEEEEECCTTH----H---HH---H----HTTCSEEEEEECC------------CCCCHHHHH----HCSEEEE
T ss_pred ccCCCEEEEeCCCccch----H---HH---H----HHhCCEEEEEEeCCccH---H---HHHHHHhhhc----ccCEEEE
Confidence 45678999999998752 1 11 1 25779999999987221 1 01111 1111 2789999
Q ss_pred eCCCCCCcccccHHHHhcccCCchHHHHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 145 TGGDDLEDHEKTLEDFLGHECPKPLKEILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 145 nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
||+|.... ..+...+.. ++..+...+. .+. ....+.|++.+.+++.|++.|...+.
T Consensus 202 NK~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~--~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 202 NKDDGDNH--TNVAIARHM-----YESALHILRRKYDEWQ--PRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCCCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBC--CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ECCCCCCh--HHHHHHHHH-----HHHHHHhccccccCCC--CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99997654 334333333 3333332221 000 01124688888999999999988765
No 181
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.53 E-value=2.9e-14 Score=121.85 Aligned_cols=124 Identities=14% Similarity=0.205 Sum_probs=78.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
...+|+|||.||||||||+|+|++..... ...+.|+.........+.+..+.|+||||+.........+...+...+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v---~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEA---AEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCG---GGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcc---cCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 33689999999999999999999876422 222333333334445588999999999999865433334445555554
Q ss_pred hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC-ccCcEEEEEeCCCCC
Q 023779 98 GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN-VFDYMIVVFTGGDDL 150 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivv~nk~D~~ 150 (277)
. .+|++++|+|++.++ .+...+..-...++.. ..+|.++++||.|..
T Consensus 148 ~----~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 R----TCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----HCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred H----hcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4 459999999998432 2222222212222322 234888999999964
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.53 E-value=6.8e-14 Score=109.38 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=92.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCce--EEEEeCCCCCCCCCCchHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQV--VNVIDTPGLFDLSAGSEFVGKEIVK 95 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~ 95 (277)
...+|+|+|++|||||||++.|++....... ..+.+....... ...++.. +.+|||||.......
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~-i~~~g~~~~~~i~Dt~g~~~~~~~---------- 94 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRS-IQVDGKTIKAQIWDTAGLERYRAI---------- 94 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEE-EEETTEEEEEEEEEECSCCSSSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEE-EEECCEEEEEEEEECCCCcchhhh----------
Confidence 3479999999999999999999987653221 122222222222 2245554 457999997643211
Q ss_pred HHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 96 CLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 96 ~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
....+..++++++|+|+....+... ..++..+..... ...|+++++||+|........... .+.+..
T Consensus 95 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~i~~v~nK~Dl~~~~~~~~~~---------a~~l~~ 162 (191)
T 1oix_A 95 -TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAVPTDE---------ARAFAE 162 (191)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred -hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECcccccccccCHHH---------HHHHHH
Confidence 1112345689999999873221111 123333333222 224899999999975321011111 333444
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHH
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVI 208 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~ 208 (277)
..+. ..+. +|+..+.++.++++.|.+.+
T Consensus 163 ~~~~--~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 163 KNGL--SFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HTTC--EEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred HcCC--EEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 4333 2333 57777889999999887653
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.51 E-value=3.1e-13 Score=117.30 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-ceEEEEeCCCCCCCCCCchHHHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-QVVNVIDTPGLFDLSAGSEFVGKEIVKCLG 98 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 98 (277)
..|+|+|++|||||||+|+|++......+. ...|....... ..+.+ ..++++||||+.........+...+...
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~--~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~-- 232 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPY--PFTTLSPNLGV-VEVSEEERFTLADIPGIIEGASEGKGLGLEFLRH-- 232 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCC--TTCSSCCEEEE-EECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHH--
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCc--ccceecceeeE-EEecCcceEEEEeccccccchhhhhhhhHHHHHH--
Confidence 468999999999999999999875422211 11122222222 22343 7799999999865311111111222222
Q ss_pred hcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHhhcC
Q 023779 99 MAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQLCD 177 (277)
Q Consensus 99 ~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 177 (277)
...++++++++|++ +-...+ ....+.+..+...-..+|.++|+||+|.... . .+.. +...+...+
T Consensus 233 --~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~----~~~~-----l~~~l~~~g 298 (416)
T 1udx_A 233 --IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--E----AVKA-----LADALAREG 298 (416)
T ss_dssp --HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H----HHHH-----HHHHHHTTT
T ss_pred --HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--H----HHHH-----HHHHHHhcC
Confidence 24569999999996 222222 1222222222100012389999999996533 2 2222 333433333
Q ss_pred CeEEEEeCCCcccccChhHHHHHHHHHHHHHhhcC
Q 023779 178 NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQNG 212 (277)
Q Consensus 178 ~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~~~ 212 (277)
..++ ..|+....++++|++.|...+....
T Consensus 299 ~~vi------~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 299 LAVL------PVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp SCEE------ECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred CeEE------EEECCCccCHHHHHHHHHHHHHhcc
Confidence 3333 3577788999999999999987643
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.50 E-value=3.9e-13 Score=112.42 Aligned_cols=172 Identities=16% Similarity=0.117 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-CccccCCC----CCcceeeEEEEEee-eC--CceEEEEeCCCCCCCCCC---c
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK-AFKASAGS----SGVTKTCEMKTTVL-KD--GQVVNVIDTPGLFDLSAG---S 86 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~-~~~~~~~~----~~~t~~~~~~~~~~-~~--~~~~~liDtpG~~~~~~~---~ 86 (277)
-..+|+|+|++|+|||||+|+|+|.. .+..+... ...+.......... .. ...+++|||||++..... .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 34899999999999999999999873 33333110 01122111111111 11 246899999999543210 1
Q ss_pred hHHHHHHH----HHHhhc---------CCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 87 EFVGKEIV----KCLGMA---------KDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 87 ~~~~~~~~----~~~~~~---------~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+...+. ..+... ...+++++|+.+.. .++...+. +.++.+.. . .|+++|+||+|....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~---~~l~~l~~-~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV---AFMKAIHN-K--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH---HHHHHHTT-T--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH---HHHHHHHh-c--CCEEEEEEeCCCCCH
Confidence 11222111 222111 12346677777654 34777664 34444322 2 289999999998755
Q ss_pred ccccHHHHhcccCCchHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 153 HEKTLEDFLGHECPKPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 153 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..+... ..+++...+..+ ..+|++.+ ++++++..+.+.+.
T Consensus 171 --~e~~~~~~~-----~~~~~~~~~~~~------~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 171 --KERERLKKR-----ILDEIEEHNIKI------YHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTCCC------CCCC----------CHHHHHHHH
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeE------EecCCccc-cccHHHHHHHHHhh
Confidence 334333333 455555555333 24577777 88888887777654
No 185
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.49 E-value=8.9e-16 Score=139.42 Aligned_cols=168 Identities=16% Similarity=0.188 Sum_probs=86.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcc--------------cc---------------CCCCCcceeeEEEEEeeeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFK--------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~--------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (277)
...++|+++|++|+|||||+|+|++..... .| ....+.|.......+. ..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~-~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE-SD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE-eC
Confidence 355789999999999999999996421000 00 0012344444444333 45
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCcCccCcE
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNR-----F--SQEEETAVHRLPNLFGKNVFDYM 140 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~ 140 (277)
+..+.||||||+.+... .+..++..+|++|+|+|++.+ + .......+..+.. .+.. ++
T Consensus 254 ~~~i~iiDTPGh~~f~~-----------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip---~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS-----------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGIS---EI 318 (592)
T ss_dssp -----CCEEESSSEEEE-----------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCC---CE
T ss_pred CeEEEEEECCChHHHHH-----------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCC---eE
Confidence 67899999999775311 112234567999999999842 3 4555555555554 3431 49
Q ss_pred EEEEeCCCCCCcccccHHHHhcccCCchHHHHH-hhcCCe---EEEEeCCCcccccChhHHH--------------HHHH
Q 023779 141 IVVFTGGDDLEDHEKTLEDFLGHECPKPLKEIL-QLCDNR---CVLFDNKTKDEAKGTEQVR--------------QLLS 202 (277)
Q Consensus 141 ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~s~~~~~~~~--------------~L~~ 202 (277)
|||+||+|........+...... +..++ ...+.. +.+ .+.|+..+.|+. .|++
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~i----i~iSA~~G~gI~e~~~~~~~~w~~g~~Lle 389 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVHF----VPISAISGTNLIQKDSSDLYKWYKGPTLLS 389 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEEE----EEECSSSCSSSCSCCCCGGGGTCCSCCHHH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceEE----EEEecccCcccccccccccccccchHHHHH
Confidence 99999999865211344444444 56665 444431 111 245667777776 6888
Q ss_pred HHHHHHh
Q 023779 203 LVNSVIV 209 (277)
Q Consensus 203 ~i~~~~~ 209 (277)
.|...++
T Consensus 390 ~l~~~~p 396 (592)
T 3mca_A 390 ALDQLVP 396 (592)
T ss_dssp HHHTSCC
T ss_pred HHHhhcc
Confidence 7776554
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.49 E-value=2.2e-13 Score=122.07 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=76.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccC------------------CCCCcceeeEEEEEeeeCCceEEEEeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KASA------------------GSSGVTKTCEMKTTVLKDGQVVNVIDTP 77 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~liDtp 77 (277)
+.++|+|+|++|+|||||+++|++.... ..+. ...+.|.......+ .+.+..+.|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~-~~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQF-PYHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEE-EETTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEE-EECCeEEEEEECC
Confidence 4589999999999999999999853210 0000 01122222222223 3678899999999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
|..+.. .... .++..+|++++|+|+..+........+..+... + .|+++++||+|....
T Consensus 91 G~~df~-------~~~~----~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFS-------EDTY----RTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCC-------HHHH----HGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCS
T ss_pred CChhHH-------HHHH----HHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCccc
Confidence 987642 1222 234577999999999866766665555544431 2 289999999998654
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.47 E-value=1.3e-13 Score=122.10 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-Ccc-------------cc---------------CCCCCcceeeEEEEEeeeC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK-AFK-------------AS---------------AGSSGVTKTCEMKTTVLKD 67 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~-~~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (277)
...++|+++|+.++|||||+++|+... .+. .| ....+.|.......+. ++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cC
Confidence 345799999999999999999997321 000 00 0012344444433333 56
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCcCccCcE
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-------SQEEETAVHRLPNLFGKNVFDYM 140 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 140 (277)
+..+.||||||..+ +.......+..+|++++|+|+..+. .......+..+.. .+. .++
T Consensus 120 ~~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 78899999999654 2333344567889999999998432 1233444444433 232 139
Q ss_pred EEEEeCCCCCCc--ccccHHHHhcccCCchHHHHHhhc-CC----eEEEEeCCCcccccChhHHHHH
Q 023779 141 IVVFTGGDDLED--HEKTLEDFLGHECPKPLKEILQLC-DN----RCVLFDNKTKDEAKGTEQVRQL 200 (277)
Q Consensus 141 ivv~nk~D~~~~--~~~~l~~~l~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~s~~~~~~~~~L 200 (277)
+|++||+|.... ....++..... +..++... +. .+.. .+.|+..+.++.++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~----i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY----MPVSAYTGQNVKDR 242 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE----EECBTTTTBTTSSC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE----Eecccccccccccc
Confidence 999999998542 01233444433 55555544 32 1222 13466666666543
No 188
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.47 E-value=7.7e-13 Score=110.54 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=73.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMA 100 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 100 (277)
+|+++|.+||||||+++.+.+... +......++|........ .....+.+|||||......+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~-~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQ-PLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCC-SGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCC-CCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 589999999999999998876533 221112233433332222 133679999999977542111 0 11234
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHH--hCcCccCcEEEEEeCCCCCCc
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNL--FGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+++++++++|+|++.++...-..+..++... ..++ .|+++++||+|....
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence 6789999999999955333323333334322 1233 399999999998754
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.47 E-value=4.6e-13 Score=114.64 Aligned_cols=108 Identities=16% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+..+.||||||+... .... ...+|++++|+|....... ..+.... ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----------~~~~----~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----------EVAV----ANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----------HHHH----HTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----------HHHH----HHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence 4678999999997641 1111 2567999999998722111 1111100 11389999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcC-------CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+|.... ......... +...+.... ..++ ..|+..+.|+++|++.|...++.
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi------~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVL------TMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEE------EEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceE------EEEcCCCCCHHHHHHHHHHHHHH
Confidence 997644 333333333 433332221 2222 46888899999999999998865
No 190
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=112.96 Aligned_cols=150 Identities=19% Similarity=0.253 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC-----CcceeeEEEEEeeeC---CceEEEEeCCCCCCCCCCc---hH
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSS-----GVTKTCEMKTTVLKD---GQVVNVIDTPGLFDLSAGS---EF 88 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~liDtpG~~~~~~~~---~~ 88 (277)
.+++|+|++|+|||||+|+|+|...+..|.... ..+............ ...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 689999999999999999999877655542211 111111111111111 1358999999998643211 12
Q ss_pred HHH----HHHHHHhh----------cCCCccEEEEEEeCC-CCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcc
Q 023779 89 VGK----EIVKCLGM----------AKDGIHAFLVVFSVT-NRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDH 153 (277)
Q Consensus 89 ~~~----~~~~~~~~----------~~~~~~~~l~v~d~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~ 153 (277)
+.. .+...+.. ....+++.++++|.. .+++..+...+..+... .++++|+||+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 222 22222211 112358889999865 68888887777776653 289999999999887
Q ss_pred cccHHHHhcccCCchHHHHHhhcCCeEEE
Q 023779 154 EKTLEDFLGHECPKPLKEILQLCDNRCVL 182 (277)
Q Consensus 154 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 182 (277)
..+..+... ++..+...+..++.
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYP 178 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSS
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccC
Confidence 667666665 66666666655544
No 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=4.4e-13 Score=116.01 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCccccCCC--CCcceeeEEEEEeeeCC---ceEEEEeCCCCCCCCCCc---h----H
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKASAGS--SGVTKTCEMKTTVLKDG---QVVNVIDTPGLFDLSAGS---E----F 88 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~---~----~ 88 (277)
+++|+|++|+|||||+|+|+|..+....... .+.+.. ......... ..++++|+||++...... . .
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4999999999999999999998642111111 112221 111111122 268999999998642211 1 1
Q ss_pred HHHHHHHHHhhc---------CCC--ccE-EEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCccccc
Q 023779 89 VGKEIVKCLGMA---------KDG--IHA-FLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKT 156 (277)
Q Consensus 89 ~~~~~~~~~~~~---------~~~--~~~-~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 156 (277)
+...+..++... .+. +|+ +++++|++.+++..+..+++.+. .. .|+|+|+||+|.+.. ..
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~--~~vI~Vi~KtD~Lt~--~E 193 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SK--VNIIPIIAKADAISK--SE 193 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SC--SEEEEEESCGGGSCH--HH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hC--CCEEEEEcchhccch--HH
Confidence 222333333322 112 344 66777777778888866666554 22 299999999999877 55
Q ss_pred HHHHhcc
Q 023779 157 LEDFLGH 163 (277)
Q Consensus 157 l~~~l~~ 163 (277)
+..+...
T Consensus 194 ~~~l~~~ 200 (427)
T 2qag_B 194 LTKFKIK 200 (427)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555554
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.46 E-value=4e-14 Score=129.83 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=85.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCCccccCCC--------------CCcceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKASAGS--------------SGVTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~---~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
.++|+|+||.++|||||..+|+ |... ..|... .+.|.......+. |++..++||||||+.|
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~-~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~D 79 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAIT-ELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMD 79 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCS-SCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCc-cccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHH
Confidence 3689999999999999999985 2110 011000 1445544444444 7889999999999998
Q ss_pred CCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 82 LSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
+ ..++..++..+ |+.++|+|+..+....++..++.+.+. +- |.++++||+|....
T Consensus 80 F-------~~Ev~raL~~~----DgavlVVDa~~GV~~qT~~v~~~a~~~-~l----p~i~~INKmDr~~a 134 (638)
T 3j25_A 80 F-------LAEVYRSLSVL----DGAILLISAKDGVQAQTRILFHALRKM-GI----PTIFFINKIDQNGI 134 (638)
T ss_dssp T-------HHHHHHHHTTC----SEEECCEESSCTTCSHHHHHHHHHHHH-TC----SCEECCEECCSSSC
T ss_pred H-------HHHHHHHHHHh----CEEEEEEeCCCCCcHHHHHHHHHHHHc-CC----CeEEEEeccccccC
Confidence 5 34667776554 999999999988988888888888775 33 78999999997654
No 193
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.46 E-value=1e-12 Score=121.15 Aligned_cols=117 Identities=27% Similarity=0.253 Sum_probs=79.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc--cccCC--------------CCCcceeeEEEEEeeeCCceEEEEeCCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF--KASAG--------------SSGVTKTCEMKTTVLKDGQVVNVIDTPGLF 80 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~liDtpG~~ 80 (277)
....+|+|+|++|+|||||+++|++.... ..|.. ..+.+........ .+.+..+.||||||..
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~-~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPL-LFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEE-EETTEEEEEEECCCSG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEE-eeCCEEEEEEeCCCcc
Confidence 35589999999999999999999843321 11100 0123333333333 3567889999999976
Q ss_pred CCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCC
Q 023779 81 DLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDL 150 (277)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~ 150 (277)
+. ...+...+. .+|++++|+|+..++......++..+... +. |+++++||+|..
T Consensus 86 ~f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~-~i----p~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DF-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL-GL----PRMVVVTKLDKG 139 (665)
T ss_dssp GG-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT-TC----CEEEEEECGGGC
T ss_pred ch-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc-cC----CEEEEecCCchh
Confidence 42 233444443 45999999999877887777777766653 32 899999999976
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.45 E-value=1.3e-13 Score=128.06 Aligned_cols=130 Identities=27% Similarity=0.293 Sum_probs=88.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCC--------C------ccc--cCCCCCcceeeEEEEEeee------CCceEE
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRK--------A------FKA--SAGSSGVTKTCEMKTTVLK------DGQVVN 72 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~--------~------~~~--~~~~~~~t~~~~~~~~~~~------~~~~~~ 72 (277)
|-++-++|+|+|+.++|||||..+|+-.. + .+. .....+.|.......+.+. ++..++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44567899999999999999999886111 0 000 0111244444444433311 256799
Q ss_pred EEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 73 VIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 73 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
||||||+.|+ ..+...++..+ |+.|+|+|+..+....++..++.+... +. |.++++||+|....
T Consensus 89 lIDTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 89 VIDTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp EECCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred EEeCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 9999999986 35778888777 999999999999999998888887765 33 89999999997654
Q ss_pred ccccHHHHhcc
Q 023779 153 HEKTLEDFLGH 163 (277)
Q Consensus 153 ~~~~l~~~l~~ 163 (277)
.+...+.+
T Consensus 153 ---~~~~~~~e 160 (709)
T 4fn5_A 153 ---NFLRVVEQ 160 (709)
T ss_dssp ---CHHHHHHH
T ss_pred ---cHHHHHHH
Confidence 44444443
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.43 E-value=5e-12 Score=107.84 Aligned_cols=108 Identities=14% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
.+..+.|+||||+... + ... ...+|++++|+|++.+. +...+. ..++. .|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~----~------~~l----~~~~d~vl~V~d~~~~~---~~~~i~--~~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS----E------FAV----ADMVDMFVLLLPPAGGD---ELQGIK--RGIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C----H------HHH----HTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh----h------hhH----HhhCCEEEEEEcCCcch---hHHHhH--HHHHh----cCCEEEEee
Confidence 5677899999998642 1 111 24679999999987321 111111 11222 278999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhc-------CCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLC-------DNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+|.... ......+.. +...+... ...++ ..|+..+.++++|++.|...++.
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi------~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVI------RISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 997643 222111221 22222111 11222 36888889999999999988754
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=6.9e-12 Score=106.60 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDL 82 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 82 (277)
.+|+|+|.+|||||||+|+|++....... . ..+|......... +.+ ..+.+|||||+...
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~-~-p~tTi~p~~g~v~-~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAAN-Y-PFCTIEPNTGVVP-MPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccC-C-CCceECceEEEEe-cCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 68999999999999999999986631111 1 1112221111111 222 46899999998753
Q ss_pred CCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 83 SAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
......+...+... ++.+|++++|+|++
T Consensus 80 a~~~~gl~~~fl~~----ir~ad~il~VvD~~ 107 (363)
T 1jal_A 80 ASKGEGLGNKFLAN----IRETDAIGHVVRCF 107 (363)
T ss_dssp HHHHGGGTCCHHHH----HHTCSEEEEEEECS
T ss_pred ccccchHHHHHHHH----HHhcCeEEEEEecC
Confidence 21111122222222 35679999999997
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.29 E-value=1.1e-11 Score=116.95 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccc--c------------CCCCCcceeeEEEEEeee---------------CC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA--S------------AGSSGVTKTCEMKTTVLK---------------DG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~--~------------~~~~~~t~~~~~~~~~~~---------------~~ 68 (277)
..++|+|+|+.|+|||||+++|++...... + ....+.|........... .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 457999999999999999999985311000 0 001122332222222211 15
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+.||||||..++. .+...++ +.+|++++|+|+..+.+..+...+..+... + .|+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~~~~~l----~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVTAAL----RVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHHHHH----HTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HHHHHHH----HhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence 679999999988743 2333343 456999999999977777776655544432 2 28999999999
Q ss_pred CC
Q 023779 149 DL 150 (277)
Q Consensus 149 ~~ 150 (277)
..
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 75
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.29 E-value=2.2e-11 Score=104.16 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEee--------------------eCCceEEEEeCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVL--------------------KDGQVVNVIDTPGL 79 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~~~~~~liDtpG~ 79 (277)
.+|+|+|.+|+|||||+|+|++... ..... ...|.......... ..+..+.+|||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~-~v~~~-p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANA-LAANY-PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHT-TCSSC-CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cccCC-CCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997642 11111 11122111111110 12356899999999
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
.........+...+...+ +.+|++++|+|+.
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~ 110 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCF 110 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECC
Confidence 865433333334444443 4569999999997
No 199
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.26 E-value=4.5e-11 Score=109.05 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=70.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCc-cccCCCCCccee----------e-EEE---------------------------
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAF-KASAGSSGVTKT----------C-EMK--------------------------- 61 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~----------~-~~~--------------------------- 61 (277)
.|+|+|++|||||||+++|+|...+ .+|......+.- . ...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4999999999999999999998644 344322211110 0 000
Q ss_pred -------------EEeeeCCceEEEEeCCCCCC--CCCCchHHHHHHHHHHhhcCCCc-cEEEEEEeCCCCCCHHHHHHH
Q 023779 62 -------------TTVLKDGQVVNVIDTPGLFD--LSAGSEFVGKEIVKCLGMAKDGI-HAFLVVFSVTNRFSQEEETAV 125 (277)
Q Consensus 62 -------------~~~~~~~~~~~liDtpG~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~l~v~d~~~~~~~~~~~~~ 125 (277)
.........+.++|.||+.. +.+.+......+...+..+.... .+++++++....+. ....+
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~l 204 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEAL 204 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHHH
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHHH
Confidence 00001123589999999876 33344455566666666644433 55556655442322 22344
Q ss_pred HHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 126 HRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 126 ~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
..+......+ .++|+|+||+|....
T Consensus 205 ~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 205 SMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHhhcC--CceEEEecchhhcCc
Confidence 5555543222 279999999998865
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.26 E-value=7.1e-12 Score=102.67 Aligned_cols=182 Identities=14% Similarity=0.022 Sum_probs=95.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCcHHHHHHHHh-----CCCCccccCCCCCc--------------ceeeEEE-EE------
Q 023779 10 WKPTSPSNGERTVVLLGRTGNGKSATGNSIL-----GRKAFKASAGSSGV--------------TKTCEMK-TT------ 63 (277)
Q Consensus 10 ~~~~~~~~~~~~i~lvG~~g~GKStlin~l~-----~~~~~~~~~~~~~~--------------t~~~~~~-~~------ 63 (277)
.-++..-.....++++|..||||||+++.|. |..+.....-+... +...... ..
T Consensus 5 ~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T 1yrb_A 5 HHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAI 84 (262)
T ss_dssp CCCCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHH
T ss_pred cccccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcE
Confidence 3344555567899999999999999999998 65432111000000 0000000 00
Q ss_pred -------------------eeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHH-
Q 023779 64 -------------------VLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEET- 123 (277)
Q Consensus 64 -------------------~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~- 123 (277)
....+..+.||||||..+.. . ...+...+...+.. +++++++|+....+..+..
T Consensus 85 ~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~----~-~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~ 158 (262)
T 1yrb_A 85 VESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF----L-FHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCF 158 (262)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHH----H-HSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHH
T ss_pred EecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchh----h-hhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHH
Confidence 00012468999999965310 0 00111112223355 8999999987333443322
Q ss_pred HHHHH-HHHhCcCccCcEEEEEeCCCCCCcccccH---HHHhcccCCchHHHH---------------------HhhcCC
Q 023779 124 AVHRL-PNLFGKNVFDYMIVVFTGGDDLEDHEKTL---EDFLGHECPKPLKEI---------------------LQLCDN 178 (277)
Q Consensus 124 ~~~~l-~~~~~~~~~~~~ivv~nk~D~~~~~~~~l---~~~l~~~~~~~~~~~---------------------~~~~~~ 178 (277)
..... ....... .|+++|+||+|.... ..+ .+++.. +..+ +...+.
T Consensus 159 ~~~~~~~~~~~~~--~p~~iv~NK~D~~~~--~~~~~~~~~l~~-----~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 229 (262)
T 1yrb_A 159 VRFFALLIDLRLG--ATTIPALNKVDLLSE--EEKERHRKYFED-----IDYLTARLKLDPSMQGLMAYKMCSMMTEVLP 229 (262)
T ss_dssp HHHHHHHHHHHHT--SCEEEEECCGGGCCH--HHHHHHHHHHHC-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcccC--CCeEEEEeccccccc--ccHHHHHHHHhC-----hHHHHHHHhccccccchhHhHHHHHHHHhcC
Confidence 11111 1111111 389999999997654 222 233222 1111 122221
Q ss_pred eEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 179 RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 179 ~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
. ....+.|++.+.++++|++.|.+.++.
T Consensus 230 ~----~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 230 P----VRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp C----CCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred c----ccceEEEecCcccHHHHHHHHHHHhcc
Confidence 1 022356788889999999999988765
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.22 E-value=4.8e-11 Score=101.22 Aligned_cols=107 Identities=15% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHH-HHHHHHhCcCccCcEEEEEe
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAV-HRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~-~~l~~~~~~~~~~~~ivv~n 145 (277)
.+..+.|+||||+... .. .+ ...+|++++++++... .+...+ ..+.+ .+.++++|
T Consensus 146 ~~~~~iliDT~Gi~~~----~~---~v-------~~~~d~vl~v~d~~~~---~~~~~i~~~i~~-------~~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS----ET---AV-------ADLTDFFLVLMLPGAG---DELQGIKKGIFE-------LADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSC----HH---HH-------HTTSSEEEEEECSCC---------CCTTHHH-------HCSEEEEE
T ss_pred CCCCEEEEECCCCCcc----hh---hH-------HhhCCEEEEEEcCCCc---ccHHHHHHHHhc-------cccEEEEE
Confidence 5778999999998752 11 11 2467999999997621 111100 01111 15677889
Q ss_pred CCCCCCcccccHHHHhcccCCchHHHHHhhcC-------CeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 146 GGDDLEDHEKTLEDFLGHECPKPLKEILQLCD-------NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
|+|..... .......+. +...+.... ..++ ..|+..+.++++|++.|.....
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl------~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVV------TISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 99965430 111111221 222222111 2222 2578888999999999988775
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.22 E-value=8.9e-13 Score=113.19 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=74.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcc----ccCCCC-CcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFK----ASAGSS-GVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~----~~~~~~-~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
..+|+++|.+|+|||||+|+|++..... ...+.. +.|....... -+..+.++||||+.+.......+..+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP----LDEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE----SSSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE----ecCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999763211 111222 2332222221 122388999999987653333333332
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhc
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLG 162 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~ 162 (277)
...+. ....++..+|+++..+.+.......+..+. +.. .|+++++||.|.... ..++...+
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~--~~~~~~~~ 296 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR--TKLEKADE 296 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE--EEHHHHHH
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc--ccHHHHHH
Confidence 32221 235678899999884221111211122222 122 389999999998876 45544433
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=4.6e-13 Score=115.05 Aligned_cols=123 Identities=18% Similarity=0.177 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC-----CCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR-----KAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEI 93 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~ 93 (277)
..+|+++|.+|+|||||+|+|++. .....+. ..+.|....... -+..+.++||||+.+.......+..+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~~~----~~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIEIP----LESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEEEE----CSTTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEEEE----eCCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 467999999999999999999976 2211111 123333332221 233478999999987643233222222
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
...+. ....+++++|+++..+.+.......+..+. +.. .|+++++||.|....
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 22221 125689999999985221111211122222 222 389999999998865
No 204
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.17 E-value=3.8e-10 Score=97.68 Aligned_cols=169 Identities=19% Similarity=0.133 Sum_probs=92.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCc--ceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHH
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGV--TKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC 96 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 96 (277)
...|+|+|++|+|||||+|+|+|...+..|...... ++...+. ........++++|+||++.... .+ .++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v-~q~~~~~~ltv~D~~g~~~~~~---~~-~~~L~~ 143 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLPGIGSTNF---PP-DTYLEK 143 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE-EECSSCTTEEEEECCCGGGSSC---CH-HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe-ccccccCCeeehHhhcccchHH---HH-HHHHHH
Confidence 358999999999999999999997766555332221 1111111 1111223689999999874321 11 222222
Q ss_pred HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCC-c------ccccHHHHhcccCCchH
Q 023779 97 LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLE-D------HEKTLEDFLGHECPKPL 169 (277)
Q Consensus 97 ~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~-~------~~~~l~~~l~~~~~~~~ 169 (277)
+. ....+.+++ ++.. +.......+...+.. .+. |+++|.|+.|.+- + .......+++. +
T Consensus 144 ~~--L~~~~~~~~-lS~G-~~~kqrv~la~aL~~-~~~----p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l 209 (413)
T 1tq4_A 144 MK--FYEYDFFII-ISAT-RFKKNDIDIAKAISM-MKK----EFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----I 209 (413)
T ss_dssp TT--GGGCSEEEE-EESS-CCCHHHHHHHHHHHH-TTC----EEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----H
T ss_pred cC--CCccCCeEE-eCCC-CccHHHHHHHHHHHh-cCC----CeEEEEecCcccccCcccccCCHHHHHHHHHH-----H
Confidence 22 122345554 6665 444444455455544 233 8999999988641 0 00122223322 3
Q ss_pred HHHH----hhcC---CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 170 KEIL----QLCD---NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 170 ~~~~----~~~~---~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+++. ...+ ...+.+.... ....+++.|.+.+...+++
T Consensus 210 ~~l~~~~l~~~g~~~~~iiliSsh~----l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 210 RLNCVNTFRENGIAEPPIFLLSNKN----VCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp HHHHHHHHHHTTCSSCCEEECCTTC----TTSTTHHHHHHHHHHHSCG
T ss_pred HHHHHHHHHhcCCCCCcEEEEecCc----CCccCHHHHHHHHHHhCcc
Confidence 3332 1222 3445544432 2235799999999988876
No 205
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.12 E-value=1.8e-10 Score=99.05 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=59.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCC-----------------ceEEEEeCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDG-----------------QVVNVIDTP 77 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~liDtp 77 (277)
....+.+|+|+|++|+|||||+|+|+|......... ..+|........ ...+ ..+.+||||
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~-p~tTi~p~~G~v-~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKV-AVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEE-EECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCC-Cceeecceeeee-eeCCcchhhhhhhcccccccCcceEEEecc
Confidence 334568999999999999999999998654122211 112222211111 1232 357899999
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 78 GLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 78 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
|+.......+.+...+...+ ..+|++++|+++.
T Consensus 94 Gl~~~~s~~e~L~~~fl~~i----r~~d~il~Vvd~~ 126 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHV----RAVDAIYQVVRAF 126 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHH----TTCSEEEEEEECC
T ss_pred ccccCCcHHHHHHHHHHHHH----HHHHHHHHHHhcc
Confidence 99865544343444444443 4679999999986
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.09 E-value=1.6e-10 Score=92.03 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=82.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCc--ccc--CCCCCcce--------eeEEEEEe-----------------eeCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAF--KAS--AGSSGVTK--------TCEMKTTV-----------------LKDG 68 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~--~~~--~~~~~~t~--------~~~~~~~~-----------------~~~~ 68 (277)
..++|+++|++|+|||||++.|++.... ... ....+.+. ........ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 3478999999999999999999854210 000 00001000 00000000 1234
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGD 148 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D 148 (277)
..+.+|||||.... .. ......+.+++|+|+...... ...... ..+ .|+++|+||+|
T Consensus 109 ~d~iiidt~G~~~~---~~-----------~~~~~~~~~i~vvd~~~~~~~----~~~~~~-~~~----~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLIC---PV-----------DFDLGENYRVVMVSVTEGDDV----VEKHPE-IFR----VADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSG---GG-----------GCCCSCSEEEEEEEGGGCTTH----HHHCHH-HHH----TCSEEEEECGG
T ss_pred CCEEEEeCCCCCCC---Cc-----------hhccccCcEEEEEeCCCcchh----hhhhhh-hhh----cCCEEEEeccc
Confidence 56889999985211 00 011245788999998733211 111111 122 28999999999
Q ss_pred CCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 149 DLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
........+..... .+...+ ..++ ..|+..+.++.+|++.|...+..
T Consensus 166 l~~~~~~~~~~~~~---------~~~~~~~~~~i~------~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 166 LAEAVGADVEKMKA---------DAKLINPRAKII------EMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GHHHHTCCHHHHHH---------HHHHHCTTSEEE------ECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CCcchhhHHHHHHH---------HHHHhCCCCeEE------EeecCCCCCHHHHHHHHHHHHHH
Confidence 65321112333222 222222 2222 45777889999999999887644
No 207
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.09 E-value=1.5e-10 Score=99.33 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeC-----------------CceEEEEeCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKD-----------------GQVVNVIDTPGL 79 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~liDtpG~ 79 (277)
....+|+|+|.+|+|||||+|+|++.... .. ....+|.......+. .. ...+.+|||||+
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~-~~-~~p~tTi~p~~g~v~-v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl 96 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQAS-AE-NFPFCTIDPNESRVP-VPDERFDFLCQYHKPASKIPAFLNVVDIAGL 96 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEE-CCCHHHHHHHHHHCCSEEECCEEEEEECCC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcc-cc-CCCccccCceeEEEE-ECCccceeeccccCcccccccccEEEECCCc
Confidence 35578999999999999999999987641 11 111222222111111 12 235899999998
Q ss_pred CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC
Q 023779 80 FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 114 (277)
.........+...+.. .++.+|++++|+|+.
T Consensus 97 ~~~as~~~glg~~~l~----~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 97 VKGAHNGQGLGNAFLS----HISACDGIFHLTRAF 127 (396)
T ss_dssp ----------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred ccccchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence 8643222222222333 345679999999987
No 208
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.08 E-value=3.9e-10 Score=101.65 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=61.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC-ccccCCCCCcceeeEEEE--EeeeCCceEEEEeCCCCCCCCC-CchHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA-FKASAGSSGVTKTCEMKT--TVLKDGQVVNVIDTPGLFDLSA-GSEFVGKEI 93 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~--~~~~~~~~~~liDtpG~~~~~~-~~~~~~~~~ 93 (277)
+..+|+|+|.+|+|||||+|+|+|... +..+....+.|....... .....+..+.|+||||+.+... ....-...+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~f 116 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIF 116 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHH
Confidence 447899999999999999999999764 222222222332222111 1113567899999999987543 221111111
Q ss_pred HHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023779 94 VKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (277)
Q Consensus 94 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~ 130 (277)
.-+...+ + ++|+++...++..+...+..+.+
T Consensus 117 ala~lls----s--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 117 ALAVLLS----S--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHC----S--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHhc----C--eEEEECCCCccHHHHHHHHHHHH
Confidence 1111112 2 45566566788887766665544
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.06 E-value=1.7e-09 Score=95.87 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh------CCCCccccCCC-CCcc--------e--eeEEEEE--------------e-
Q 023779 17 NGERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGS-SGVT--------K--TCEMKTT--------------V- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~-~~~t--------~--~~~~~~~--------------~- 64 (277)
.+..+|+++|++||||||+++.|+ |..+.-...-. .+.. . ...++.. .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345799999999999999999998 65432111000 0000 0 0111110 0
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcE-EE
Q 023779 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYM-IV 142 (277)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~-iv 142 (277)
.+.+..+.||||||.... +..+..++...... ..+|.+++|+|+..... .......+.+. .|+ .|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence 125678999999998752 23333444333321 26799999999984433 22333333331 164 89
Q ss_pred EEeCCCCCCc
Q 023779 143 VFTGGDDLED 152 (277)
Q Consensus 143 v~nk~D~~~~ 152 (277)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999997744
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.99 E-value=9.9e-10 Score=90.76 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEF 88 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~ 88 (277)
...+|+++|.+|+|||||+|+|+|......+.. .+.|...... ..+..+.++||||+......+..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~~~~~ 184 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWV----KVGKELELLDTPGILWPKFEDEL 184 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCE----EETTTEEEEECCCCCCSCCCCHH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEE----EeCCCEEEEECcCcCCCCCCCHH
Confidence 457999999999999999999999875444322 2233333221 12457899999999876654443
No 211
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.90 E-value=6.1e-08 Score=82.70 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=45.1
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~- 135 (277)
.++..+.+|||+|.. .+......++.+++++|+|+|++ .+. ..-.....++...+...
T Consensus 198 ~~~~~l~i~Dt~Gq~-----------~~r~~w~~~f~~~~~iIfv~dls-~~dq~l~ed~~~n~~~es~~~~~~i~~~~~ 265 (362)
T 1zcb_A 198 IKNVPFKMVDVGGQR-----------SERKRWFECFDSVTSILFLVSSS-EFDQVLMEDRQTNRLTESLNIFETIVNNRV 265 (362)
T ss_dssp ETTEEEEEEEECC------------------CTTSCTTCCEEEEEEETT-CTTCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred eCCeEEEEEeccchh-----------hhhhhHHHHhCCCCEEEEEEECc-cccccccccccccHHHHHHHHHHHHhcchh
Confidence 456779999999943 33444456789999999999998 421 11223334444443321
Q ss_pred -ccCcEEEEEeCCCCC
Q 023779 136 -VFDYMIVVFTGGDDL 150 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~ 150 (277)
...|++|++||.|..
T Consensus 266 ~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 266 FSNVSIILFLNKTDLL 281 (362)
T ss_dssp GTTSEEEEEEECHHHH
T ss_pred hCCCCEEEEEEChhhh
Confidence 124999999999965
No 212
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.87 E-value=1.3e-08 Score=88.64 Aligned_cols=123 Identities=16% Similarity=0.139 Sum_probs=69.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCCcccc--CCCCC---------cceeeEEEEEe----------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKAS--AGSSG---------VTKTCEMKTTV---------------- 64 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~--~~~~~---------~t~~~~~~~~~---------------- 64 (277)
++..|+++|++|+||||++..|. |..+.... ....+ .......+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999987 33321110 00000 00000011000
Q ss_pred eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 65 LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
...+..+.||||||... .+..+..++...... ..+|.+++|+|+..+ .........+.+.. ....||+
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 01246789999999765 234444455444332 257999999999732 22223333333321 2577999
Q ss_pred eCCCCCCc
Q 023779 145 TGGDDLED 152 (277)
Q Consensus 145 nk~D~~~~ 152 (277)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99997655
No 213
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.87 E-value=4e-08 Score=83.54 Aligned_cols=129 Identities=12% Similarity=0.124 Sum_probs=72.0
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCC---------HHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFS---------QEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~---------~~~~~~~~~l~~~~~~~- 135 (277)
.++..+.+|||+|.. .+......++.+++++++|+|++ .+. ..-.....++..++...
T Consensus 190 ~~~~~l~iwDt~GQe-----------~~r~~w~~yf~~a~~iIfV~dls-~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 190 FKDLHFKMFDVGGQR-----------SERKKWIHCFEGVTAIIFCVALS-DYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGCTTCSEEEEEEEGG-GGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred eCCeeEEEEeCCCch-----------hhhHHHHHHHhcCCEEEEEEECc-cccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 456789999999943 23344456789999999999998 321 11223444555544321
Q ss_pred -ccCcEEEEEeCCCCCCcc--cccHHHHhccc----CCchHHHHHh----hc-----CCeEEEEeCCCcccccChhHHHH
Q 023779 136 -VFDYMIVVFTGGDDLEDH--EKTLEDFLGHE----CPKPLKEILQ----LC-----DNRCVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~----~~~~~~~~~~----~~-----~~~~~~~~~~~~~s~~~~~~~~~ 199 (277)
...|++|++||.|..... ...+..+.... .......++. .. ...+..+ .+||..+.++..
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~ 333 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQF 333 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHH
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHH
Confidence 124999999999964220 00011110000 0001222222 11 1222222 457888899999
Q ss_pred HHHHHHHHHhh
Q 023779 200 LLSLVNSVIVQ 210 (277)
Q Consensus 200 L~~~i~~~~~~ 210 (277)
+++.+...+..
T Consensus 334 vF~~v~~~i~~ 344 (353)
T 1cip_A 334 VFDAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998877644
No 214
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.81 E-value=5.8e-08 Score=81.77 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=48.7
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC---------CHHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF---------SQEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~~~~~l~~~~~~~- 135 (277)
..+..+.+|||+|- +.+......++++++++++|+|++ .+ ...-...+.++...+...
T Consensus 158 ~~~v~l~iwDtaGQ-----------e~~R~~w~~yy~~a~~iIfV~diS-~ydq~l~e~~~~nr~~es~~~~~~i~~~~~ 225 (340)
T 4fid_A 158 VKDIPFHLIDVGGQ-----------RSERKXWVSFFSDVDCAIFVTSLA-EYDMKLYEDGNTSRLTESIAVFKDIMTNEF 225 (340)
T ss_dssp SSSCEEEEEECCSC-----------HHHHHHHHTTSCSCSEEEEEEEGG-GTTCBCC--CCSBHHHHHHHHHHHHHHCGG
T ss_pred eeeeeeccccCCCc-----------ccccccHHHHhccCCEEEEEEECC-ccccccccccccchHHHHHHHHHHHhhhhc
Confidence 45678999999992 345566667899999999999997 11 111123334444443211
Q ss_pred -ccCcEEEEEeCCCCCC
Q 023779 136 -VFDYMIVVFTGGDDLE 151 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~~ 151 (277)
...|++|++||+|...
T Consensus 226 ~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 226 LKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp GTTSEEEEEEECHHHHH
T ss_pred cCCCeEEEEEECchhhh
Confidence 1249999999999653
No 215
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.78 E-value=4.8e-09 Score=85.70 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=39.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSA 84 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~ 84 (277)
.+|+++|.+|+|||||+|+|+|......+.. .+.|...... ..+..+.+|||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~~~----~~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQWF----SLENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEE----ECTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceEEE----EeCCCEEEEECCCcccCcC
Confidence 5899999999999999999998776444322 2333332211 2245788999999998655
No 216
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.76 E-value=1.3e-08 Score=81.19 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
...+|+|+|++|||||||++.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999854
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.76 E-value=3.5e-07 Score=76.74 Aligned_cols=129 Identities=14% Similarity=0.172 Sum_probs=72.6
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCC-------C--CCCHHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVT-------N--RFSQEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~-------~--~~~~~~~~~~~~l~~~~~~~- 135 (277)
..+..+.+|||.|- +.+......++++++++++|+|++ . .... -...+.++..++...
T Consensus 164 ~~~v~l~iwDtgGQ-----------e~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr-~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 164 LQSVIFRMVDVGGQ-----------RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENR-MEESKALFRTIITYPW 231 (327)
T ss_dssp ETTEEEEEEEECCS-----------HHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBH-HHHHHHHHHHHHTSGG
T ss_pred eeceeeEEEEcCCc-----------hhHHHHHHHHhCCCCEEEEEEECccccccccccccHhH-HHHHHHHHHHHhhhhc
Confidence 46678999999992 345555567889999999999775 1 1111 123444555554321
Q ss_pred -ccCcEEEEEeCCCCCCcc--cccHHHHhcccCC--ch---HHHH-----Hhh--cC-CeEEEEeCCCcccccChhHHHH
Q 023779 136 -VFDYMIVVFTGGDDLEDH--EKTLEDFLGHECP--KP---LKEI-----LQL--CD-NRCVLFDNKTKDEAKGTEQVRQ 199 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~~~~--~~~l~~~l~~~~~--~~---~~~~-----~~~--~~-~~~~~~~~~~~~s~~~~~~~~~ 199 (277)
...|++|++||+|..... ...+..+...... .. ...+ ... .. ..++.+ .++|....++..
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~nV~~ 307 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTENIRF 307 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCHHHHH
Confidence 124999999999965320 0112222111000 00 1111 111 11 222222 357778899999
Q ss_pred HHHHHHHHHhh
Q 023779 200 LLSLVNSVIVQ 210 (277)
Q Consensus 200 L~~~i~~~~~~ 210 (277)
++..+.+.+-.
T Consensus 308 vF~~v~~~Il~ 318 (327)
T 3ohm_A 308 VFAAVKDTILQ 318 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.70 E-value=7.8e-08 Score=83.65 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCCcccc--CCCCC---------cceeeEEEE--------------Eee-
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL------GRKAFKAS--AGSSG---------VTKTCEMKT--------------TVL- 65 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~------~~~~~~~~--~~~~~---------~t~~~~~~~--------------~~~- 65 (277)
++..|+++|++|+||||++..|. |..+.-.. ....+ .......+. ...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45889999999999999999987 33221100 00000 000000000 000
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
..+..+.|+||||..... .+.....++....... .++.+++|+|+... .........+.+..+ +..||+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 125678899999975411 1233444555544333 46899999999722 222233344443322 688999
Q ss_pred eCCCCCCc
Q 023779 145 TGGDDLED 152 (277)
Q Consensus 145 nk~D~~~~ 152 (277)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99997644
No 219
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.63 E-value=5.3e-08 Score=85.01 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=66.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC------Ccc--ccCC--------------------CCC-cceee-EE--EEEeee
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK------AFK--ASAG--------------------SSG-VTKTC-EM--KTTVLK 66 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~------~~~--~~~~--------------------~~~-~t~~~-~~--~~~~~~ 66 (277)
...|+++|++|+||||+++.|.+.. +.- .... ... .+... .. ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987521 100 0000 000 00000 00 001112
Q ss_pred CCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCcc-CcEEEEEe
Q 023779 67 DGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVF-DYMIVVFT 145 (277)
Q Consensus 67 ~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ivv~n 145 (277)
.+..+.||||||.... +..+..++... .....+|.+++|+|+..+. . .+..+.. +... . ....+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~--~---~~~~~~~-~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ--Q---AGIQAKA-FKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG--G---HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH--H---HHHHHHH-Hhhc-ccCCeEEEEe
Confidence 4567899999998752 23333333221 1234689999999987332 1 2222322 2211 1 24889999
Q ss_pred CCCCCCc
Q 023779 146 GGDDLED 152 (277)
Q Consensus 146 k~D~~~~ 152 (277)
|+|....
T Consensus 247 K~D~~~~ 253 (432)
T 2v3c_C 247 KLDGSAK 253 (432)
T ss_dssp CSSSCST
T ss_pred CCCCccc
Confidence 9997643
No 220
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.61 E-value=2.7e-07 Score=78.44 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=44.4
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC---------CCCHHHHHHHHHHHHHhCcC--c
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN---------RFSQEEETAVHRLPNLFGKN--V 136 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~---------~~~~~~~~~~~~l~~~~~~~--~ 136 (277)
...+.+|||+|-.. +......++++++++++|+|++. .... -.....++..++... .
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s-~~~~~~~~~~i~~~~~~~ 249 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNR-MMETKELFDWVLKQPCFE 249 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBH-HHHHHHHHHHHHTCGGGS
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhH-HHHHHHHHHHHHhccccC
Confidence 35689999999542 33444567899999999999860 1111 123334444443211 2
Q ss_pred cCcEEEEEeCCCCC
Q 023779 137 FDYMIVVFTGGDDL 150 (277)
Q Consensus 137 ~~~~ivv~nk~D~~ 150 (277)
..|++||+||+|..
T Consensus 250 ~~piiLvgNK~DL~ 263 (354)
T 2xtz_A 250 KTSFMLFLNKFDIF 263 (354)
T ss_dssp SCEEEEEEECHHHH
T ss_pred CCeEEEEEECcchh
Confidence 24999999999964
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.60 E-value=4.2e-07 Score=75.75 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=67.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC------C--CCCc---------ceeeEEEEEe----------------
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA------G--SSGV---------TKTCEMKTTV---------------- 64 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~------~--~~~~---------t~~~~~~~~~---------------- 64 (277)
++..|+|+|++|||||||++.|.|...+..+. . .... .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998543222210 0 0000 0001111100
Q ss_pred eeCCceEEEEeCCCCCCCCCC-chHHHHHHHHHH-hhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEE
Q 023779 65 LKDGQVVNVIDTPGLFDLSAG-SEFVGKEIVKCL-GMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIV 142 (277)
Q Consensus 65 ~~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 142 (277)
...+..+.++||+|....... ..++.+ ....+ ......|+.+++++|+..+. .....+..+.+..+ ..+|
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~-~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~~-----~t~i 252 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKK-VKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAVG-----LTGV 252 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHH-HHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHHC-----CSEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHH-HHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHcC-----CcEE
Confidence 011335679999998653210 011221 22222 22345688888899976332 22223333333233 4788
Q ss_pred EEeCCCCCCc
Q 023779 143 VFTGGDDLED 152 (277)
Q Consensus 143 v~nk~D~~~~ 152 (277)
++||.|....
T Consensus 253 ivTh~d~~a~ 262 (304)
T 1rj9_A 253 IVTKLDGTAK 262 (304)
T ss_dssp EEECTTSSCC
T ss_pred EEECCccccc
Confidence 9999986543
No 222
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.58 E-value=3.3e-07 Score=80.56 Aligned_cols=126 Identities=14% Similarity=0.146 Sum_probs=68.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC--Ccce---------------eeEEEEEe---------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS--GVTK---------------TCEMKTTV--------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~--~~t~---------------~~~~~~~~--------------- 64 (277)
..+..|+|+|++|||||||++.|.|......|.... ..+. ...+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 456799999999999999999998643222221000 0000 01111100
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHH---Hhhc-CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc
Q 023779 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKC---LGMA-KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY 139 (277)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~ 139 (277)
...+..+.|+||+|.... ...+..++.+. +... ...++-+++|+|+..+ ......+..+.+..+ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 012356889999998642 22333333322 2222 2346788999997622 222233334443333 3
Q ss_pred EEEEEeCCCCCCc
Q 023779 140 MIVVFTGGDDLED 152 (277)
Q Consensus 140 ~ivv~nk~D~~~~ 152 (277)
..+|+||+|....
T Consensus 441 tgvIlTKLD~tak 453 (503)
T 2yhs_A 441 TGITLTKLDGTAK 453 (503)
T ss_dssp SEEEEECGGGCSC
T ss_pred CEEEEEcCCCccc
Confidence 6789999996533
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.53 E-value=1.6e-07 Score=79.11 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC--------CCCc-------c--eeeEEEEEe---------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG--------SSGV-------T--KTCEMKTTV--------------- 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~--------~~~~-------t--~~~~~~~~~--------------- 64 (277)
.++..|+|+|++|+||||+++.|.|...+..+.. .... . ....+....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 4568999999999999999999986432222100 0000 0 000011000
Q ss_pred -eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEE
Q 023779 65 -LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVV 143 (277)
Q Consensus 65 -~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 143 (277)
...+..+.++||+|..... ..+..++....... .+|-.++++|+..+ ..-...+..+.+..+ ..+|+
T Consensus 207 ~~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 0113457789999986532 22333443332222 35888999998732 111222233332222 46899
Q ss_pred EeCCCCCCc
Q 023779 144 FTGGDDLED 152 (277)
Q Consensus 144 ~nk~D~~~~ 152 (277)
+||+|....
T Consensus 275 lTKlD~~a~ 283 (328)
T 3e70_C 275 LTKLDADAR 283 (328)
T ss_dssp EECGGGCSC
T ss_pred EeCcCCccc
Confidence 999996543
No 224
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.52 E-value=4.7e-07 Score=79.01 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+...|+|+|++++|||||+|.|+|.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4578999999999999999999863
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.41 E-value=2.7e-06 Score=70.82 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCc-------c----eeeEEEEEee--------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGV-------T----KTCEMKTTVL-------------- 65 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t----~~~~~~~~~~-------------- 65 (277)
.++..++++|++||||||+++.|+|...+..|.. .... . ....+.....
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 4567999999999999999999986543222210 0000 0 0111111100
Q ss_pred ---eCCceEEEEeCCCCCCCCCCchHHHHHH---HHHHh-hcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccC
Q 023779 66 ---KDGQVVNVIDTPGLFDLSAGSEFVGKEI---VKCLG-MAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFD 138 (277)
Q Consensus 66 ---~~~~~~~liDtpG~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~ 138 (277)
..+....++||.|..... .....++ ...+. .....++-+++++|....+.... .+..+.+..+
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~--~~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHH--HHHHHHHhcC-----
Confidence 012346789999986532 2222222 22222 23456787788888553433322 2233333222
Q ss_pred cEEEEEeCCCCCCc
Q 023779 139 YMIVVFTGGDDLED 152 (277)
Q Consensus 139 ~~ivv~nk~D~~~~ 152 (277)
..+|++||.|....
T Consensus 248 ~t~iiiThlD~~~~ 261 (302)
T 3b9q_A 248 ITGLILTKLDGSAR 261 (302)
T ss_dssp CCEEEEECCSSCSC
T ss_pred CCEEEEeCCCCCCc
Confidence 46788999986533
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=8.3e-08 Score=79.85 Aligned_cols=60 Identities=30% Similarity=0.363 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC------CcceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS------GVTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
.+..++|+|++|||||||+|+|+|...+.+|.... ..|...... . .. ...++||||+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~--~-~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELI--H-TS--GGLVADTPGFSSL 237 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEE--E-ET--TEEEESSCSCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHh--h-cC--CEEEecCCCcccc
Confidence 45789999999999999999999877655553321 122211111 1 11 3579999998764
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.41 E-value=2.6e-06 Score=72.41 Aligned_cols=129 Identities=14% Similarity=0.153 Sum_probs=67.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccCC------CCCc-------c----eeeEEEEEee--------------
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASAG------SSGV-------T----KTCEMKTTVL-------------- 65 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t----~~~~~~~~~~-------------- 65 (277)
.++..|+|+|++|||||||++.|+|...+..|.. .... . ....+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 4567999999999999999999986433222210 0000 0 0111111100
Q ss_pred ---eCCceEEEEeCCCCCCCCCC-chHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEE
Q 023779 66 ---KDGQVVNVIDTPGLFDLSAG-SEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMI 141 (277)
Q Consensus 66 ---~~~~~~~liDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 141 (277)
..+....++||.|+...... ..++.+............++-+++|+|....+.... .+..+.+..+ ..+
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~--~~~~~~~~~g-----~t~ 307 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLP--QAREFNEVVG-----ITG 307 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHH--HHHHHHHHTC-----CCE
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHH--HHHHHHHhcC-----CeE
Confidence 01234679999998753210 011221111122223466888888888553333322 2233333222 478
Q ss_pred EEEeCCCCCCc
Q 023779 142 VVFTGGDDLED 152 (277)
Q Consensus 142 vv~nk~D~~~~ 152 (277)
|++||.|....
T Consensus 308 iiiThlD~~~~ 318 (359)
T 2og2_A 308 LILTKLDGSAR 318 (359)
T ss_dssp EEEESCTTCSC
T ss_pred EEEecCccccc
Confidence 89999986644
No 228
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.34 E-value=7.2e-06 Score=71.58 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=66.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------CCCCcccc--CCCCCc-------c--eeeEEEE--------------Ee
Q 023779 17 NGERTVVLLGRTGNGKSATGNSIL-------GRKAFKAS--AGSSGV-------T--KTCEMKT--------------TV 64 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~-------~~~~~~~~--~~~~~~-------t--~~~~~~~--------------~~ 64 (277)
.+...|+++|++|+||||++..|. |..+.... ...... . ....+.. ..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999987 54432111 100000 0 0000000 00
Q ss_pred --eeCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCc-EE
Q 023779 65 --LKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDY-MI 141 (277)
Q Consensus 65 --~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i 141 (277)
...+..+.||||||.... +..+..++..... ...++.+++|+|+.... ........+.. .. + .-
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~--~~~~~~~~f~~----~l--~i~g 244 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQ--DAANTAKAFNE----AL--PLTG 244 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCT--THHHHHHHHHH----HS--CCCC
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhH--HHHHHHHHHhc----cC--CCeE
Confidence 014567999999997652 2233333333322 23578999999987332 11222222222 11 3 45
Q ss_pred EEEeCCCCCCc
Q 023779 142 VVFTGGDDLED 152 (277)
Q Consensus 142 vv~nk~D~~~~ 152 (277)
||+||+|....
T Consensus 245 vVlnK~D~~~~ 255 (433)
T 2xxa_A 245 VVLTKVDGDAR 255 (433)
T ss_dssp EEEECTTSSSC
T ss_pred EEEecCCCCcc
Confidence 79999997544
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.31 E-value=2.3e-06 Score=71.27 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.++..|+++|++|+||||++..|.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3457899999999999999999875
No 230
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.30 E-value=5.4e-07 Score=74.80 Aligned_cols=123 Identities=17% Similarity=0.191 Sum_probs=64.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc-------CCCCCccee-----------eEEEE----------EeeeCCc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS-------AGSSGVTKT-----------CEMKT----------TVLKDGQ 69 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~-------~~~~~~t~~-----------~~~~~----------~~~~~~~ 69 (277)
++..|+++|++|+||||++..|.+......| ......+.. ..... .....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4579999999999999999998643211111 000000000 00000 0012345
Q ss_pred eEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCC
Q 023779 70 VVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDD 149 (277)
Q Consensus 70 ~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~ 149 (277)
.+.|+||||.... ......++...+. ...++.+++|++++.. ..+ +..+...+.. ....-+|+||+|.
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence 7899999998752 2222223332221 1246778899887622 112 2223333331 2245677899996
Q ss_pred CCc
Q 023779 150 LED 152 (277)
Q Consensus 150 ~~~ 152 (277)
...
T Consensus 252 ~~~ 254 (296)
T 2px0_A 252 TTS 254 (296)
T ss_dssp CSC
T ss_pred ccc
Confidence 643
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.29 E-value=4.4e-06 Score=69.33 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh------CCCCccccCCCCCc-ce----------eeEEEE--------------Eee--
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL------GRKAFKASAGSSGV-TK----------TCEMKT--------------TVL-- 65 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~------~~~~~~~~~~~~~~-t~----------~~~~~~--------------~~~-- 65 (277)
...|+++|++|+||||++..|. |..+.-.+...... .. ...... ...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987 32221111100000 00 000000 000
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEe
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
..+..+.||||||..... ....+..++...... ..+|.+++|+++... ... +..+... .... ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~~--~~~d~vllVvda~~g--~~~---~~~~~~~-~~~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYEA--IKPDEVTLVIDASIG--QKA---YDLASKF-NQAS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGH---HHHHHHH-HHTC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHHH--hcCCEEEEEeeCCch--HHH---HHHHHHH-HhhC-CCCEEEEe
Confidence 145679999999977510 122233333222111 246899999998621 222 2333322 2111 13778999
Q ss_pred CCCCCCc
Q 023779 146 GGDDLED 152 (277)
Q Consensus 146 k~D~~~~ 152 (277)
|+|....
T Consensus 248 k~D~~~~ 254 (297)
T 1j8m_F 248 KMDGTAK 254 (297)
T ss_dssp CGGGCTT
T ss_pred CCCCCcc
Confidence 9996543
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.25 E-value=2e-06 Score=71.72 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=37.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C-cceeeEEEEEeeeCCceEEEEeCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G-VTKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~liDtpG~~~ 81 (277)
...++++|++|+|||||+|+|+ ...+.+|.... + .++..... .. . .....++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~-~~-~-~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL-IP-F-GKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE-EE-E-TTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE-EE-c-CCCcEEEECcCcCc
Confidence 4689999999999999999999 76655553332 1 12221111 11 1 12457999999864
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.18 E-value=1.4e-06 Score=73.87 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC-cccc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA-FKAS 48 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~-~~~~ 48 (277)
+..++|+|++|+|||||+|+|+|... +.+|
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 46899999999999999999999876 5555
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=1.7e-06 Score=72.00 Aligned_cols=60 Identities=30% Similarity=0.331 Sum_probs=37.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCC----C--cceeeEEEEEeeeCCceEEEEeCCCCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAGSS----G--VTKTCEMKTTVLKDGQVVNVIDTPGLFDL 82 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~liDtpG~~~~ 82 (277)
...++++|++|+|||||+|+|+|...+.+|.... + .|...... . . .....++||||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~--~-~-~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL--K-F-DFGGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE--E-C-TTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE--E-c-CCCCEEEECcCCCcc
Confidence 4689999999999999999999987766653322 1 11111111 1 1 233579999997653
No 235
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.13 E-value=1.8e-05 Score=68.88 Aligned_cols=107 Identities=18% Similarity=0.184 Sum_probs=58.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------CC----------CCccccCCCCCcceeeEEEE----EeeeCC--ceEEE
Q 023779 17 NGERTVVLLGRTGNGKSATGNSIL-------GR----------KAFKASAGSSGVTKTCEMKT----TVLKDG--QVVNV 73 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~-------~~----------~~~~~~~~~~~~t~~~~~~~----~~~~~~--~~~~l 73 (277)
.+...|+|+|++++|||+|+|.|+ |. ..|..+.+..+.|.-+-... .....+ ..+.|
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 345788999999999999999775 21 23433333333333322111 111123 35899
Q ss_pred EeCCCCCCCCCCchHHHHHHHHH-HhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHH
Q 023779 74 IDTPGLFDLSAGSEFVGKEIVKC-LGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPN 130 (277)
Q Consensus 74 iDtpG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~ 130 (277)
+||.|+++....... ...+... +..+ +++||=.. ..+...+...+..+.+
T Consensus 145 lDTEG~~d~~~~~~~-d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 145 MDTQGTFDSQSTLRD-SATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEECCBTCTTCCHHH-HHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHH
T ss_pred EeccCCCCcccCccc-cHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHH
Confidence 999999987654221 1222211 1122 55554443 3566666666655544
No 236
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=2.1e-05 Score=65.98 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+...|+++|++|+||||++..|.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998864
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.10 E-value=6.8e-06 Score=71.36 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=64.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc------ccCCCCCc-c----------eeeEEEEE--------------ee-
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK------ASAGSSGV-T----------KTCEMKTT--------------VL- 65 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~------~~~~~~~~-t----------~~~~~~~~--------------~~- 65 (277)
++..|+++|++|+||||++..|.+..... .+...... . ....+... ..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999886422110 00000000 0 00001100 00
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
..+..+.||||||.... +..+..++....... .+|.+++|+|+... .........+.... ...-||+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 13456899999997653 233334443333222 56888999998722 11122222222211 1366889
Q ss_pred eCCCCCCc
Q 023779 145 TGGDDLED 152 (277)
Q Consensus 145 nk~D~~~~ 152 (277)
||+|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99996543
No 238
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.97 E-value=1.1e-05 Score=64.26 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 4578999999999999999999997765544
No 239
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.93 E-value=6e-06 Score=66.17 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 4578999999999999999999998765555
No 240
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.91 E-value=2.7e-05 Score=64.52 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc------CCCCCcce-----------eeEEEE--------------Eee-
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS------AGSSGVTK-----------TCEMKT--------------TVL- 65 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~------~~~~~~t~-----------~~~~~~--------------~~~- 65 (277)
.+..|+++|++|+||||++..|.+......+ ........ ...... ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578999999999999999988643211100 00000000 000010 000
Q ss_pred -eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEE
Q 023779 66 -KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVF 144 (277)
Q Consensus 66 -~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~ 144 (277)
..+..+.|+||||.... +.....++....... .++.+++|+++. . ... .+..+... ... ....-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~-~-~~~---~~~~~~~~-~~~-~~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAM-T-GQE---ALSVARAF-DEK-VGVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGG-G-THH---HHHHHHHH-HHH-TCCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCC-C-cHH---HHHHHHHH-hhc-CCCCEEEE
Confidence 13457899999986642 333344444443322 468888999976 2 122 22233222 111 11356899
Q ss_pred eCCCCCCc
Q 023779 145 TGGDDLED 152 (277)
Q Consensus 145 nk~D~~~~ 152 (277)
||+|....
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99996543
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.90 E-value=1.4e-05 Score=64.00 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765444
No 242
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.89 E-value=7.2e-06 Score=65.19 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4468999999999999999999998765554
No 243
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.87 E-value=1.1e-05 Score=64.92 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+..++|+|++|+|||||++.|+|...+.+|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 35578999999999999999999998765555
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.86 E-value=9.6e-06 Score=66.07 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765555
No 245
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.85 E-value=1e-05 Score=65.89 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+..|
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 4578999999999999999999998765554
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.85 E-value=1.1e-05 Score=65.79 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765554
No 247
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.84 E-value=1.1e-05 Score=65.48 Aligned_cols=31 Identities=23% Similarity=0.182 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4578999999999999999999998765555
No 248
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.84 E-value=9.1e-06 Score=64.07 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 4467999999999999999999998765554
No 249
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.83 E-value=1e-05 Score=65.70 Aligned_cols=31 Identities=26% Similarity=0.332 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998765555
No 250
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.83 E-value=8.9e-05 Score=63.83 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=48.5
Q ss_pred eCCceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCC--C-------CCHHHHHHHHHHHHHhCcC-
Q 023779 66 KDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTN--R-------FSQEEETAVHRLPNLFGKN- 135 (277)
Q Consensus 66 ~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~--~-------~~~~~~~~~~~l~~~~~~~- 135 (277)
.++..+.+|||+|-. .+......++.+++++++|+|++. . ... -.....++..+....
T Consensus 214 ~~~v~l~iwDtaGQe-----------~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~~~i~~~~~ 281 (402)
T 1azs_C 214 VDKVNFHMFDVGGQR-----------DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLFKSIWNNRW 281 (402)
T ss_dssp ETTEEEEEEEECCSG-----------GGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHHHHHHTCTT
T ss_pred cCCccceecccchhh-----------hhhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHHHHHHhccc
Confidence 467789999999943 233444567899999999999983 0 111 123444555544321
Q ss_pred -ccCcEEEEEeCCCCC
Q 023779 136 -VFDYMIVVFTGGDDL 150 (277)
Q Consensus 136 -~~~~~ivv~nk~D~~ 150 (277)
...|++||+||+|..
T Consensus 282 ~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 282 LRTISVILFLNKQDLL 297 (402)
T ss_dssp CSSCCEEEEEECHHHH
T ss_pred CCCCeEEEEEEChhhh
Confidence 224899999999964
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.83 E-value=1e-05 Score=66.25 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|||||||++.|+|...+.+|
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 4578999999999999999999997765554
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.82 E-value=1.2e-05 Score=64.70 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998765555
No 253
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.81 E-value=1.2e-05 Score=64.48 Aligned_cols=29 Identities=38% Similarity=0.339 Sum_probs=25.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..++|+|++|+|||||++.|+|...+.+|
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRG 53 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 57999999999999999999998765554
No 254
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.81 E-value=1.2e-05 Score=64.86 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765554
No 255
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.79 E-value=2.6e-05 Score=64.37 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998765544
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.79 E-value=1.4e-05 Score=65.42 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+..++|+|++|+|||||++.|+|...+..|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 35578999999999999999999998765554
No 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.79 E-value=1.4e-05 Score=65.22 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998765555
No 258
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.79 E-value=1.4e-05 Score=65.71 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 4568999999999999999999998765555
No 259
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.77 E-value=1.5e-05 Score=64.52 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+.+|
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4468999999999999999999998765554
No 260
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.76 E-value=1.7e-05 Score=59.33 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|.. +..|
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 45689999999999999999999876 5455
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.75 E-value=1.2e-05 Score=61.61 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+++|+|++|+|||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998754
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.74 E-value=1e-05 Score=63.08 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+..++|+|++|+|||||++.|+|.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 367999999999999999999874
No 263
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.73 E-value=1.4e-05 Score=62.61 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
..+..++|+|++|||||||++.|+|..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 455789999999999999999999754
No 264
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.73 E-value=2e-05 Score=63.63 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFK 46 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~ 46 (277)
.+..++|+|++|+|||||++.|+|...+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 44689999999999999999999977654
No 265
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.70 E-value=1.7e-05 Score=66.01 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++|+|++|+|||||++.|+|...+..|
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 35578999999999999999999998765554
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.68 E-value=1.9e-05 Score=60.40 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..++|+|++|||||||++.|.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998753
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.67 E-value=2.3e-05 Score=63.39 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+..++|+|++|+|||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999996
No 268
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.66 E-value=2.8e-05 Score=65.95 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998776655
No 269
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.65 E-value=3.1e-05 Score=65.78 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..+..++|+|++|||||||++.|+|...+.+|
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 34578999999999999999999998765555
No 270
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.65 E-value=3e-05 Score=63.14 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+-.++|+|++|+|||||++.|+|.. +.+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 4689999999999999999999987 6655
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.64 E-value=2.4e-05 Score=60.94 Aligned_cols=24 Identities=13% Similarity=0.313 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+..|+|+|++|||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 467999999999999999999875
No 272
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.64 E-value=5.6e-05 Score=62.85 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=58.6
Q ss_pred ceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 69 QVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRF-SQEE-ETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 69 ~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
..+.+||| ... +......++.++|++++|+|++.+. +... ..++..+.. .+ .|++||+||
T Consensus 63 ~~~~iwD~--qer-----------~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHR-----------KNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCC-----------SCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECC
T ss_pred CeEEEEEE--ccc-----------cceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeH
Confidence 37899999 221 1111224678999999999998443 3332 233333332 12 389999999
Q ss_pred CCCCCcccccHHHHhcccCCchHHHHHhhcC--CeEEEEeCCCcccccChhHHHHHHHHHH
Q 023779 147 GDDLEDHEKTLEDFLGHECPKPLKEILQLCD--NRCVLFDNKTKDEAKGTEQVRQLLSLVN 205 (277)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~~~~L~~~i~ 205 (277)
+|.... ..+++ ..++..... ..++ .+||+.+.++++++..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~------~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIV------KTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEE------ECCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEE------EEECCCCcCHHHHHHHhc
Confidence 997654 22211 222222222 2222 467777888888777553
No 273
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.64 E-value=2.4e-05 Score=61.93 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
+.+..++|+|++|||||||++.|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567899999999999999999998654
No 274
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.63 E-value=2e-05 Score=62.31 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
++..++|+|++|+|||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999854
No 275
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.63 E-value=3.4e-05 Score=62.69 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
++..++|+|++|+|||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 557899999999999999999998764
No 276
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.62 E-value=3.5e-05 Score=62.90 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+..++|+|++|+|||||++.|+|.
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999997
No 277
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.61 E-value=2.1e-05 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
..++|+|++|||||||++.|++...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999997653
No 278
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.61 E-value=3.8e-05 Score=65.59 Aligned_cols=31 Identities=29% Similarity=0.395 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 4578999999999999999999998776555
No 279
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.61 E-value=3.9e-05 Score=65.20 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 4578999999999999999999998765555
No 280
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.61 E-value=3.9e-05 Score=65.21 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 4578999999999999999999998765555
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.60 E-value=4.2e-05 Score=58.85 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
++..|+|+|++||||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999976
No 282
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.59 E-value=4e-05 Score=65.00 Aligned_cols=31 Identities=29% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 4578999999999999999999998765555
No 283
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.58 E-value=3e-05 Score=60.77 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.++..|+|+|++|+|||||++.|.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998754
No 284
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.58 E-value=4.6e-05 Score=65.06 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 4578999999999999999999998766555
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.58 E-value=1.2e-05 Score=63.02 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccccCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKASAG 50 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~ 50 (277)
+-.++|+|++|+|||||++.|+|. .+.+|..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 457999999999999999999998 6666643
No 286
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00099 Score=51.60 Aligned_cols=69 Identities=6% Similarity=-0.014 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGG 147 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~ 147 (277)
...+.|+|||+... ......+.. +|.+++++..+ ..+..-...++.+..........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~---------~~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS---------VITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS---------HHHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC---------HHHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 45789999998553 122333333 38899999887 44433355666665542112223678999999
Q ss_pred CCC
Q 023779 148 DDL 150 (277)
Q Consensus 148 D~~ 150 (277)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 287
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.57 E-value=3.4e-05 Score=62.44 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL---GRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~---~~~~~~~~ 48 (277)
....|+|+|++||||||+++.|. |...+.+|
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 45789999999999999999998 76554433
No 288
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.57 E-value=3.7e-05 Score=59.57 Aligned_cols=26 Identities=38% Similarity=0.763 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
++..|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998653
No 289
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.56 E-value=3.6e-05 Score=65.17 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 55 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSG 55 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCc
Confidence 4578999999999999999999998765555
No 290
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.54 E-value=5.1e-05 Score=64.86 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 4468999999999999999999998766555
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.52 E-value=4e-05 Score=60.07 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.++..|+|+|++|||||||++.|.|.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.52 E-value=5.9e-05 Score=57.19 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++..++++|++|||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 457899999999999999998653
No 293
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.51 E-value=3.4e-05 Score=65.48 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|||||||++.|+|...+.+|
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 4578999999999999999999998766555
No 294
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.51 E-value=0.00024 Score=70.49 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++.+|+|||++|+|||||++.|+|...+..|
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G 1134 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCCC
Confidence 5679999999999999999999987765555
No 295
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.49 E-value=5.2e-05 Score=61.65 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
.++..++|+|++|+|||||++.|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3557899999999999999999997543
No 296
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.48 E-value=0.00065 Score=67.40 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccccccC
Confidence 5679999999999999999999998766555
No 297
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00011 Score=65.94 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
++..++|+|++|+|||||++.|+|...+..|.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 45789999999999999999999987766653
No 298
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.46 E-value=5.4e-05 Score=62.81 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+++..++|+|++|+|||||++.|+|.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 34578999999999999999999874
No 299
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=7.8e-05 Score=56.51 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.....|+|+|++|+||||+++.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4457899999999999999999864
No 300
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.44 E-value=6.8e-05 Score=58.76 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
++..|+|+|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34789999999999999999998764
No 301
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.44 E-value=6.6e-05 Score=60.39 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 6 VDGDWKPTSPSNGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 6 ~~~~~~~~~~~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+-++..... .++..|+|+|++|||||||++.|.|.
T Consensus 14 ~l~~isl~i--~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQS--MRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccC--CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 334444433 34578999999999999999999763
No 302
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.43 E-value=7.7e-05 Score=60.02 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCCccc
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL---GRKAFKA 47 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~---~~~~~~~ 47 (277)
...|+|+|++||||||+++.|+ |...+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999 8665443
No 303
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.42 E-value=0.0001 Score=66.27 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
.++-.++|+|++|+|||||++.|+|...+..|.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 466899999999999999999999987666654
No 304
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00011 Score=66.75 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
.++..++|+|++|+|||||++.|+|...+..|.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 456799999999999999999999988776664
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.39 E-value=8.2e-05 Score=62.10 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
...+..|+|+|++|||||||++.|.|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456899999999999999999998754
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.38 E-value=8.4e-05 Score=57.77 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+..|+|+|++||||||+++.|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999975
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.37 E-value=6.3e-05 Score=59.90 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL-GRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~-~~~ 43 (277)
++..|+|+|++||||||+++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999 764
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.37 E-value=0.0001 Score=62.87 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~ 47 (277)
.+..|+|+|++|+|||||+++|+|...+..
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 456899999999999999999998765433
No 309
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=7.1e-05 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.268 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
.+++|+|++|+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999997654
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.36 E-value=9.9e-05 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0016 Score=56.67 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+-|+|.||+|+|||+|+++|.+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 37899999999999999999984
No 312
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.34 E-value=0.00014 Score=66.15 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
..+..++|+|++|+|||||++.|+|...+..|.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 466899999999999999999999987766664
No 313
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.33 E-value=0.00053 Score=56.32 Aligned_cols=91 Identities=9% Similarity=0.073 Sum_probs=53.5
Q ss_pred HHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHHHHh
Q 023779 95 KCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKEILQ 174 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~~~~ 174 (277)
+.+......+|+++.|+|+..+.+.....+-++ .+. +|+++|+||+|.... ...+. +.+..+
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~----l~~---kp~ilVlNK~DL~~~--~~~~~---------~~~~~~ 76 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDI----LKN---KPRIMLLNKADKADA--AVTQQ---------WKEHFE 76 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH----CSS---SCEEEEEECGGGSCH--HHHHH---------HHHHHH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH----HCC---CCEEEEEECcccCCH--HHHHH---------HHHHHH
Confidence 333344556799999999985555433222222 232 489999999998754 22222 333333
Q ss_pred hcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 175 LCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 175 ~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
..+..++. .|+..+.++.+|++.+...+.
T Consensus 77 ~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 77 NQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp TTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred hcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 33444443 355556777777777766654
No 314
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.31 E-value=0.00059 Score=58.28 Aligned_cols=100 Identities=9% Similarity=0.056 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHH
Q 023779 91 KEIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLK 170 (277)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~ 170 (277)
+.+...+..+++..|++++|+|+.. .+..+...+.+.++. +|+++|+||+|.... ....+.+.. .+.
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d----~~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~--~~~~~~~~~----~l~ 123 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFD----FNGSWLPGLHRFVGN---NKVLLVGNKADLIPK--SVKHDKVKH----WMR 123 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTS----HHHHCCTTHHHHSSS---SCEEEEEECGGGSCT--TSCHHHHHH----HHH
T ss_pred HHHHHHHHHHhccCcEEEEEEECCC----CcccHHHHHHHHhCC---CcEEEEEEChhcCCc--ccCHHHHHH----HHH
Confidence 3455555555667789999999982 233444455555442 499999999998754 211111111 023
Q ss_pred HHHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 171 EILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
......+. .++ ..||+.+.++++|++.|.+...
T Consensus 124 ~~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 124 YSAKQLGLKPEDVF------LISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhcc
Confidence 33445554 233 4578888999999999987653
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.31 E-value=9.9e-05 Score=62.12 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCccc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAFKA 47 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~~~ 47 (277)
+..++|+|++|+|||||++.|+|...+..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~ 199 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEE 199 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCC
Confidence 45899999999999999999998765433
No 316
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.29 E-value=0.00017 Score=65.61 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++|+|++|+|||||++.|+|...+..|
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 35578999999999999999999998766555
No 317
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=62.47 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
.+..++|+|++|||||||++.|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 457899999999999999999999764
No 318
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=0.00016 Score=65.78 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 5578999999999999999999998765554
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.25 E-value=0.00012 Score=56.19 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++|+||||+++.|.+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999985
No 320
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00021 Score=64.10 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+..++|+|++|+|||||++.|+|...+.+|
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4568999999999999999999998776665
No 321
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.22 E-value=0.00017 Score=60.04 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..+..|+|+|++|||||||++.|.|.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45589999999999999999999864
No 322
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.21 E-value=0.00023 Score=63.88 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
.+-.++|+|++|+|||||++.|+|...+..|.
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 45789999999999999999999987766664
No 323
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.21 E-value=0.00016 Score=61.40 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+...|+|+|++|||||||+++|+|..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34589999999999999999998754
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.21 E-value=0.00014 Score=54.98 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999753
No 325
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0029 Score=54.68 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+-|+|.||+|+|||+|+++|.+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHH
Confidence 36799999999999999999984
No 326
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0025 Score=54.70 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
+-|+|.||+|+|||+|++++.+
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 6699999999999999999984
No 327
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.20 E-value=0.00025 Score=64.55 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
.+-.++|+|++|+|||||++.|+|...+..|.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 412 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 45689999999999999999999987766664
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.18 E-value=0.0002 Score=55.64 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
++..|+|+|++|+||||+.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 329
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.17 E-value=0.00018 Score=56.97 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.+..++|+|++|+|||||++.|+|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44789999999999999999998743
No 330
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.17 E-value=0.00015 Score=65.88 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++++|++|+|||||++.|+|...+..|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 35679999999999999999999998765555
No 331
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.17 E-value=0.00016 Score=65.94 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++..++|+|++|+|||||++.|+|...+..|
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 4578999999999999999999998765554
No 332
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0019 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+-|+|.||+|+|||+|+++|.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999984
No 333
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.17 E-value=0.0002 Score=56.95 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 15 PSNGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 15 ~~~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
+..++..|+|.|++||||||+++.|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3356689999999999999999999864
No 334
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=0.00018 Score=65.63 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++++|++|+|||||++.|+|...+..|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 35679999999999999999999998765555
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.16 E-value=0.00024 Score=56.92 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh
Q 023779 17 NGERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~ 40 (277)
+++-.++|+|++|+|||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345789999999999999999988
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.16 E-value=0.00019 Score=63.94 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
+..|+|+|+||||||||+++|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999998654
No 337
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.13 E-value=0.00021 Score=61.19 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.++..|+|+|++|+|||||++.|++..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999998754
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.12 E-value=0.00027 Score=59.02 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.....|+|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998753
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.12 E-value=0.00025 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+..|+|+|++||||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4577999999999999999999753
No 340
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.11 E-value=0.00018 Score=62.40 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKA 44 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~ 44 (277)
+...|+|+|++|+|||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 446899999999999999999987543
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00011 Score=55.77 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
..|+|+|++|+|||||++.|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 342
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.11 E-value=0.00022 Score=64.86 Aligned_cols=32 Identities=31% Similarity=0.272 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++..++++|++|+|||||++.|+|...+..|
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 35678999999999999999999998765555
No 343
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.00014 Score=64.02 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+.+++|+|++|+|||||++.|+|...+..|
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4578999999999999999999987654443
No 344
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.00035 Score=63.53 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCccccC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKASA 49 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~~ 49 (277)
..++|+|++|+|||||++.|+|...+..|.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 468999999999999999999988766663
No 345
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.10 E-value=0.00018 Score=61.38 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRKAF 45 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~~~ 45 (277)
..+++|+|++|+|||||++.|+|...+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999999999999986543
No 346
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.00021 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..++|+|++|+|||||+++|.+..
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999998644
No 347
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.07 E-value=0.00025 Score=62.46 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=24.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 20 RTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
..++|+|++|+|||||++.|+|...+..|
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 67999999999999999999986554444
No 348
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.05 E-value=0.00044 Score=52.88 Aligned_cols=25 Identities=20% Similarity=0.407 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+...|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999874
No 349
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.05 E-value=0.00034 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.....|+|+|++|+||||+++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999975
No 350
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.04 E-value=0.00031 Score=55.53 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+|+|+|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.03 E-value=0.00038 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999986
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.00045 Score=53.84 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
....|+|+|++|+||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999875
No 353
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.01 E-value=0.00036 Score=53.56 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 023779 21 TVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~ 42 (277)
-|+|+||+|||||||++.|+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3889999999999999999754
No 354
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.99 E-value=0.0024 Score=52.89 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=32.8
Q ss_pred cCCCccEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 100 AKDGIHAFLVVFSVTNR-FSQEE-ETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 100 ~~~~~~~~l~v~d~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
++.++|++++|+|++.+ ++... ..++..+.. . + .|+++|+||+|...+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-~--~--~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-F--K--VEPVIVFNKIDLLNE 125 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-T--T--CEEEEEECCGGGCCH
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-C--C--CCEEEEEEcccCCCc
Confidence 56889999999999843 45443 233333332 2 2 389999999998654
No 355
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.99 E-value=0.00063 Score=52.73 Aligned_cols=29 Identities=21% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779 12 PTSPSNGERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 12 ~~~~~~~~~~i~lvG~~g~GKStlin~l~ 40 (277)
+.++......|+|+|.+||||||+.+.|.
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 34445566789999999999999999986
No 356
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.98 E-value=0.00027 Score=67.23 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.+-+++|+|++|+|||||++.|+|...+..|
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4568999999999999999999998765554
No 357
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.98 E-value=0.0068 Score=57.77 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSI 39 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l 39 (277)
.+..++|+|++|+|||||++.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4578999999999999999998
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.97 E-value=0.00032 Score=54.46 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 359
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.96 E-value=0.00024 Score=52.51 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
....++|+|++|+|||||+++|.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998643
No 360
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.95 E-value=0.00031 Score=59.48 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF 45 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~ 45 (277)
.++-+++|+|++|+|||||++.|+|...+
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35679999999999999999999986543
No 361
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0018 Score=56.27 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+-|+|.||+|+|||+|+++|.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 47899999999999999999984
No 362
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.0053 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++|+|||+++++|..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999999974
No 363
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.93 E-value=0.00068 Score=57.94 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=60.0
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCcccccHHHHhcccCCchHHH
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLEDHEKTLEDFLGHECPKPLKE 171 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~~~~~l~~~l~~~~~~~~~~ 171 (277)
.+...+..++...+++++|+|+. .+.. .+...+...++. +|+++|+||+|.... ....+.+.. .+..
T Consensus 60 ~f~~~L~~~~~~~~lil~VvD~~-d~~~---s~~~~l~~~l~~---~piilV~NK~DLl~~--~~~~~~~~~----~l~~ 126 (369)
T 3ec1_A 60 DFLSMLHRIGESKALVVNIVDIF-DFNG---SFIPGLPRFAAD---NPILLVGNKADLLPR--SVKYPKLLR----WMRR 126 (369)
T ss_dssp HHHHHHHHHHHHCCEEEEEEETT-CSGG---GCCSSHHHHCTT---SCEEEEEECGGGSCT--TCCHHHHHH----HHHH
T ss_pred HHHHHHHHhhccCcEEEEEEECC-CCCC---chhhHHHHHhCC---CCEEEEEEChhcCCC--ccCHHHHHH----HHHH
Confidence 34445544455669999999998 3322 222333444442 499999999998754 221111111 0233
Q ss_pred HHhhcCC---eEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 172 ILQLCDN---RCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 172 ~~~~~~~---~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
.....+. .++ ..|++.+.++.+|++.+.+...
T Consensus 127 ~~~~~g~~~~~v~------~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 127 MAEELGLCPVDVC------LVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHHTTTCCCSEEE------ECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHHcCCCcccEE------EEECCCCCCHHHHHHHHHhhcc
Confidence 4455554 222 4578888999999999988764
No 364
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00057 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 446899999999999999999973
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.91 E-value=0.00053 Score=56.56 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.....|+|+|++|||||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998753
No 366
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.91 E-value=0.00053 Score=51.55 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 023779 20 RTVVLLGRTGNGKSATGNSI 39 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l 39 (277)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 367
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.0058 Score=53.28 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+-|+|.||+|+|||+|+++|.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHh
Confidence 347899999999999999999984
No 368
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.90 E-value=0.00058 Score=51.82 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..++|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57999999999999999999854
No 369
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.89 E-value=0.00039 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
...++|+|++|+|||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3678999999999999999999764
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.86 E-value=0.0008 Score=52.45 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+..|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999863
No 371
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.83 E-value=0.00075 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999974
No 372
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.83 E-value=0.00067 Score=50.93 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++||||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 373
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.82 E-value=0.00071 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|+|++||||||+.+.|.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 374
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.82 E-value=0.00066 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
..+|+|++|+||||++.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999864
No 375
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.79 E-value=0.0095 Score=46.40 Aligned_cols=66 Identities=15% Similarity=0.094 Sum_probs=38.9
Q ss_pred CceEEEEeCCCC-CCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEe
Q 023779 68 GQVVNVIDTPGL-FDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFT 145 (277)
Q Consensus 68 ~~~~~liDtpG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~n 145 (277)
...+.|+|||+. ... .....+. .+|.+++++..+ ..+... ...++.+.... + .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l~----~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~--~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALAD----GCDLLVIPSTPD-ALALDALMLTIETLQKLG--N--NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHHH----TSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--S--SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHHH----HCCEEEEEecCC-chhHHHHHHHHHHHHhcc--C--CCEEEEEE
Confidence 456899999986 431 2223333 348899888876 222222 34444454422 1 26889999
Q ss_pred CCCCCC
Q 023779 146 GGDDLE 151 (277)
Q Consensus 146 k~D~~~ 151 (277)
++|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998543
No 376
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.79 E-value=0.00079 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
+..|+|+|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 377
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.79 E-value=0.00052 Score=59.96 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAF 45 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~ 45 (277)
..+-+++|+|++|+|||||++.|+|...+
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45679999999999999999999986543
No 378
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.77 E-value=0.00054 Score=56.04 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 023779 22 VVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (277)
++|+|++|+|||||+++|.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999864
No 379
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.76 E-value=0.00097 Score=51.83 Aligned_cols=105 Identities=8% Similarity=0.024 Sum_probs=56.9
Q ss_pred HHHHHHhhcCCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcC---ccCcEEEEEeCC-CCCCcccccHHHHhcccCCc
Q 023779 92 EIVKCLGMAKDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKN---VFDYMIVVFTGG-DDLEDHEKTLEDFLGHECPK 167 (277)
Q Consensus 92 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ivv~nk~-D~~~~~~~~l~~~l~~~~~~ 167 (277)
.+...+..+|.+.|++|||+|.+++-...-+..+..+..+...+ ...|++|+.||. |.... ....++.+. ..
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~-L~- 189 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHE-LH- 189 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHH-TT-
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHH-cC-
Confidence 34444555677789999999998321112333332333332221 123899999985 55433 333333222 00
Q ss_pred hHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHh
Q 023779 168 PLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIV 209 (277)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~ 209 (277)
+.. ....+++. .++|.++.|+.+-++++.+.+.
T Consensus 190 -L~~----l~R~W~Iq----~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 190 -LNL----LNHPWLVQ----DTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp -GGG----GCSCEEEE----EEETTTCTTHHHHHHHHTTTTT
T ss_pred -CcC----CCCCEEEE----EeECCCCcCHHHHHHHHHHHHH
Confidence 221 12344442 4677888999999999876654
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.74 E-value=0.001 Score=51.45 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999753
No 381
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.0013 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++..|+|+|.+|+||||+++.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 382
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.73 E-value=0.00093 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
..|+|.|++||||||+.+.|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 383
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.001 Score=50.29 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999974
No 384
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.70 E-value=0.0011 Score=49.98 Aligned_cols=23 Identities=13% Similarity=0.159 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|+|++|+|||||++.|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999874
No 385
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.69 E-value=0.0011 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...+..|+|+|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999963
No 386
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.69 E-value=9e-05 Score=58.80 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 21 TVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
.++|+|++|+|||||+++|+|...+.+|
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 4678999999999999999986654443
No 387
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.69 E-value=0.0011 Score=50.74 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
+..|+|+|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 388
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.67 E-value=0.0011 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
...|+++|++||||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999986
No 389
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.66 E-value=0.0079 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...++|.|++|+|||+++++|.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999974
No 390
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.66 E-value=0.0013 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999975
No 391
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.66 E-value=0.00095 Score=66.07 Aligned_cols=31 Identities=29% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
++.+++|+|++|+|||||++.|+|...+..|
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5578999999999999999999998765554
No 392
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.65 E-value=0.0014 Score=50.63 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
.+..|+|+|.+||||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44689999999999999999986
No 393
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.65 E-value=0.0012 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
+...|+|+|.+||||||+.+.|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999986
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.64 E-value=0.00093 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..++|+|++|+|||||++.|++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999984
No 395
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.62 E-value=0.00081 Score=54.13 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 023779 22 VVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (277)
++|+|++|+|||||+++|.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.62 E-value=0.0014 Score=49.70 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++..|+|+|.+|+||||+.+.|.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999975
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.001 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
..+-.++|+|++|+|||||++.|++..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999987644
No 398
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.59 E-value=0.0013 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.|+|+|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 399
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.58 E-value=0.0014 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
+..|+|+|.+||||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999886
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.58 E-value=0.0013 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999963
No 401
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.0016 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
+..|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 402
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.56 E-value=0.0016 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
+..|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999963
No 403
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.56 E-value=0.0011 Score=56.47 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
..+|+|+||+||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 56799999999999999987
No 404
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.55 E-value=0.0073 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|.|++|+|||++..+|..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 5599999999999999999974
No 405
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.54 E-value=0.0017 Score=49.24 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
....|+|+|.+|+||||+.+.|.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHH
Confidence 34679999999999999999987
No 406
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.52 E-value=0.0013 Score=56.31 Aligned_cols=24 Identities=21% Similarity=0.363 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..|+|+|++|+|||||++.|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446899999999999999999985
No 407
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.51 E-value=0.0017 Score=50.08 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~ 40 (277)
..+...|+|+|.+||||||+.+.|.
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHH
Confidence 3456899999999999999999986
No 408
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0017 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
...|+|+|.+||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 409
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.51 E-value=0.0024 Score=53.51 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.+.|+|+|++|+|||||...|...-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3579999999999999999998543
No 410
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.51 E-value=0.0015 Score=51.11 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.50 E-value=0.0018 Score=51.45 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
....|+|+|.+||||||+.+.|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 412
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.47 E-value=0.0016 Score=64.44 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCCcccc
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGRKAFKAS 48 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~~~~~~~ 48 (277)
+++.+++|+|++|+|||||++.|+|...+..|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 35679999999999999999999998766555
No 413
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.47 E-value=0.011 Score=56.27 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..++|+||+|+|||||++.+.+
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 457899999999999999998753
No 414
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.47 E-value=0.0011 Score=55.79 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..++|+|++|+|||||++.|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999864
No 415
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.46 E-value=0.0017 Score=50.85 Aligned_cols=20 Identities=40% Similarity=0.787 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999996
No 416
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.46 E-value=0.0012 Score=53.98 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 023779 22 VVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~~ 42 (277)
|+|+|++|+|||||+++|.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 417
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.45 E-value=0.0025 Score=50.05 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+.+.|+|+|++||||+|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456788899999999999999873
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.45 E-value=0.0016 Score=51.00 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999986
No 419
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.45 E-value=0.0021 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
+..+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999996
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.43 E-value=0.0012 Score=53.62 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=29.1
Q ss_pred CCCccEEEEEEeCCCCCCHHHHHHHHHHHHHhCcCccCcEEEEEeCCCCCCc
Q 023779 101 KDGIHAFLVVFSVTNRFSQEEETAVHRLPNLFGKNVFDYMIVVFTGGDDLED 152 (277)
Q Consensus 101 ~~~~~~~l~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nk~D~~~~ 152 (277)
...+|+++.|+|+..+.+..... +.+ .+ +|.++|+||+|....
T Consensus 19 l~~~D~vl~VvDar~P~~~~~~~-l~l----l~----k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 19 LRLVNTVVEVRDARAPFATSAYG-VDF----SR----KETIILLNKVDIADE 61 (262)
T ss_dssp HTTCSEEEEEEETTSTTTTSCTT-SCC----TT----SEEEEEEECGGGSCH
T ss_pred HhhCCEEEEEeeCCCCCcCcChH-HHh----cC----CCcEEEEECccCCCH
Confidence 35669999999998554443211 111 12 389999999998765
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0013 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|+|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 422
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.002 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++..|+|+|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999873
No 423
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.033 Score=46.45 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++|+|||+|++++..
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 36799999999999999999974
No 424
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.42 E-value=0.0019 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++|||||||.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999999864
No 425
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.41 E-value=0.0021 Score=50.37 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
+..|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 426
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.41 E-value=0.0014 Score=62.46 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.+.+++|+|++|+|||||++.|+|..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999999543
No 427
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.40 E-value=0.0026 Score=48.50 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
...|+|+|.+||||||+.+.|.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 428
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.40 E-value=0.0017 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999863
No 429
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.39 E-value=0.0018 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...+..|+|+|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34457899999999999999999864
No 430
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.38 E-value=0.002 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
...|+|+|++||||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 431
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.34 E-value=0.0022 Score=49.29 Aligned_cols=23 Identities=17% Similarity=0.504 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|+|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999863
No 432
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0019 Score=51.40 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
.+..++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3467999999999999999999863
No 433
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.33 E-value=0.002 Score=50.65 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
..|+|+|++||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 434
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.32 E-value=0.00095 Score=52.09 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.|+|+|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999874
No 435
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.32 E-value=0.0024 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
+..|+|+|++|+||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999987
No 436
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0028 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+...|+|.|++||||||+.+.|..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 437
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.26 E-value=0.0037 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
....|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 438
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.24 E-value=0.00073 Score=58.58 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
.++|+|+||+|||||+++|.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999885
No 439
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.24 E-value=0.0031 Score=49.18 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..|+|+|.+|+||||+.+.|.+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999874
No 440
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.24 E-value=0.0027 Score=48.70 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 441
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.22 E-value=0.0029 Score=47.19 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
+|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 69999999999999999986
No 442
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.20 E-value=0.0029 Score=48.35 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 443
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.19 E-value=0.0036 Score=49.66 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+..|+|.|++||||||+++.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999999999999999974
No 444
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.19 E-value=0.0018 Score=60.84 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..+..++|+|++|+|||||++.|.|.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 34578999999999999999999864
No 445
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.19 E-value=0.0038 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....|+|+|++|||||||...|..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 346789999999999999999973
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.18 E-value=0.0025 Score=48.42 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 359999999999999999985
No 447
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.17 E-value=0.0027 Score=47.63 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 448
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0035 Score=49.86 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....|+|+|++|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 449
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.17 E-value=0.0036 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...++|+|++|+|||++++.+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999874
No 450
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.17 E-value=0.0028 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 451
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.16 E-value=0.0037 Score=48.55 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 567899999999999999974
No 452
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.14 E-value=0.0022 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=16.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 023779 19 ERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~ 40 (277)
...|+|.|.+||||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999986
No 453
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.13 E-value=0.0037 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999999863
No 454
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.12 E-value=0.003 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++|+||||++++|.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999999975
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.10 E-value=0.0026 Score=51.97 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+..++|+|++|+|||||+..|++
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456899999999999999999885
No 456
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.10 E-value=0.0035 Score=49.41 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
.|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 457
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.08 E-value=0.0036 Score=48.81 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
+|+|+|++||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999973
No 458
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.06 E-value=0.0021 Score=59.41 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
.+..++|+|++|||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 45689999999999999998754
No 459
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.03 E-value=0.0036 Score=49.09 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999986
No 460
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.00 E-value=0.0022 Score=57.59 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
++..|+|+|++||||||+++.|.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 55789999999999999999998653
No 461
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.96 E-value=0.0047 Score=52.02 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
...+|+|++|+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999974
No 462
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.96 E-value=0.028 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..++|+|++|+|||||++.| |..
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHH
Confidence 578999999999999999998 644
No 463
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.95 E-value=0.0051 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
++.|+|+||||||||||...|...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 357899999999999999999743
No 464
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.94 E-value=0.0048 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|.|++|+|||+|+.+|..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
No 465
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.92 E-value=0.0049 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
+--.|+|+|.+||||||+.+.|.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999985
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.92 E-value=0.0053 Score=47.32 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~ 42 (277)
....|+|+|++|+|||||...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999743
No 467
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.92 E-value=0.013 Score=54.89 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....++|+|++|+|||+++..|..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~ 229 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999874
No 468
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.90 E-value=0.13 Score=41.41 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=38.5
Q ss_pred CceEEEEeCCCCCCCCCCchHHHHHHHHHHhhcCCCccEEEEEEeCCCCCCHHH-HHHHHHHHHHhCcCccCcEEEEEeC
Q 023779 68 GQVVNVIDTPGLFDLSAGSEFVGKEIVKCLGMAKDGIHAFLVVFSVTNRFSQEE-ETAVHRLPNLFGKNVFDYMIVVFTG 146 (277)
Q Consensus 68 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ivv~nk 146 (277)
...+.|||||+..+ ......+ ..+|.+++++..+ ..+... ...++.+... +.+ .++.+|+|+
T Consensus 144 ~yD~viiD~pp~~~---------~~~~~~l----~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~-~~~--~~~~vv~N~ 206 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD---------VTLKNAL----LCSDYVIIPMTAE-KWAVESLDLFNFFVRKL-NLF--LPIFLIITR 206 (267)
T ss_dssp TCSEEEEEECSSCS---------HHHHHHH----TTCSEEEEEEESC-TTHHHHHHHHHHHHHTT-TCC--CCEEEEEEE
T ss_pred CCCEEEEECcCCcc---------HHHHHHH----HHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH-hcc--CCEEEEEec
Confidence 35688999988543 1222232 2369999999886 443333 3444555543 332 267899999
Q ss_pred CC
Q 023779 147 GD 148 (277)
Q Consensus 147 ~D 148 (277)
.+
T Consensus 207 ~~ 208 (267)
T 3k9g_A 207 FK 208 (267)
T ss_dssp EC
T ss_pred cc
Confidence 84
No 469
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.90 E-value=0.005 Score=48.59 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....++|.|++|+||||+++.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 470
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.89 E-value=0.0034 Score=53.17 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
.+..++|+|++|+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998654
No 471
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.88 E-value=0.0038 Score=54.40 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..++|+|++|+|||||+++|.+..
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4678999999999999999997543
No 472
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.88 E-value=0.03 Score=47.96 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++|+|||+++.+|..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999963
No 473
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.86 E-value=0.0043 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..+++.||+|+||||++.+|..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 474
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.86 E-value=0.0028 Score=59.12 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILGRK 43 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~~~ 43 (277)
+..++|+|++|+|||||++.|.|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4689999999999999999998754
No 475
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.81 E-value=0.0046 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...++|+|++|+|||+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998864
No 476
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.80 E-value=0.0061 Score=51.71 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..++|+|++|+||||++++|.+
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 3789999999999999999874
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.79 E-value=0.0067 Score=50.52 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.78 E-value=0.0028 Score=52.16 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999863
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.75 E-value=0.0062 Score=47.06 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999863
No 480
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.73 E-value=0.0064 Score=50.08 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999974
No 481
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.72 E-value=0.038 Score=51.80 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCCccccCCCCCcceeeEEEEEeeeCCceEEEEeCCCCCCCCCCchHHHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSILGRKAFKASAGSSGVTKTCEMKTTVLKDGQVVNVIDTPGLFDLSAGSEFVGKEIVKCL 97 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 97 (277)
..+-|+|.|++|+|||+|+++|.+... ..+..++.+-+.... ..+....+...+
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk~--~gese~~lr~lF 290 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSKL--AGESESNLRKAF 290 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSSC--TTHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhccc--chHHHHHHHHHH
Confidence 347899999999999999999985421 122344443332211 112234455555
Q ss_pred hhcCCCccEEEEEEeCC
Q 023779 98 GMAKDGIHAFLVVFSVT 114 (277)
Q Consensus 98 ~~~~~~~~~~l~v~d~~ 114 (277)
..+.....++|++-++.
T Consensus 291 ~~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 291 EEAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHHTTSCSEEEEEESGG
T ss_pred HHHHHcCCeEEEEehhc
Confidence 55555667778776664
No 482
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.71 E-value=0.0067 Score=50.13 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++|+|||+++++|.+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHH
Confidence 36799999999999999999985
No 483
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.71 E-value=0.0097 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
++-++|.|++|+|||+++.+|..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36788889999999999999974
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.69 E-value=0.0088 Score=51.86 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....|+|+|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999874
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.69 E-value=0.0047 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATGNSI 39 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l 39 (277)
.+..++|+|++|+|||||++.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4578999999999999999994
No 486
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.68 E-value=0.0069 Score=47.91 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 023779 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 16 ~~~~~~i~lvG~~g~GKStlin~l~ 40 (277)
..+..+++|+|++||||||+...|.
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHH
Confidence 3456899999999999999999986
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.68 E-value=0.0065 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 023779 20 RTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~ 41 (277)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998864
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.66 E-value=0.0092 Score=49.26 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...++|+|++|+|||++++.|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHH
Confidence 35799999999999999999875
No 489
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.63 E-value=0.0059 Score=56.36 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.3
Q ss_pred CCeEEEEEcCCCCcHHHHH
Q 023779 18 GERTVVLLGRTGNGKSATG 36 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStli 36 (277)
.+..++|+|++|+|||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 5578999999999999996
No 490
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.62 E-value=0.0048 Score=51.57 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 023779 21 TVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~ 40 (277)
..+|+|++|+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 78899999999999999997
No 491
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.62 E-value=0.0077 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 023779 19 ERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 19 ~~~i~lvG~~g~GKStlin~l~~ 41 (277)
...|+|.|++|+|||+++++|.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 36799999999999999999974
No 492
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.60 E-value=0.0088 Score=49.36 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 18 GERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
....|+|.|++|+|||++++++..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999987763
No 493
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.55 E-value=0.12 Score=42.71 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
-+++.|++|+|||+++.+|..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 356667799999999999973
No 494
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.49 E-value=0.0085 Score=51.38 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 023779 20 RTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~ 40 (277)
+.|+|+|++|+|||||...|.
T Consensus 3 ~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHH
Confidence 678999999999999999986
No 495
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.45 E-value=0.018 Score=48.73 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 023779 21 TVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 21 ~i~lvG~~g~GKStlin~l~~ 41 (277)
.++|.|++|+||||++..+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 496
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.005 Score=51.92 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 023779 22 VVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 22 i~lvG~~g~GKStlin~l~~ 41 (277)
++|+|++|+||||+++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999886
No 497
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.41 E-value=0.015 Score=55.21 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 023779 20 RTVVLLGRTGNGKSATGNSILGR 42 (277)
Q Consensus 20 ~~i~lvG~~g~GKStlin~l~~~ 42 (277)
..++|+|++|+|||+++..|...
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999998753
No 498
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.40 E-value=0.0097 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 023779 18 GERTVVLLGRTGNGKSATGNSIL 40 (277)
Q Consensus 18 ~~~~i~lvG~~g~GKStlin~l~ 40 (277)
.+..++|+|++|+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34578999999999999977664
No 499
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.38 E-value=0.0065 Score=49.10 Aligned_cols=25 Identities=20% Similarity=0.229 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 023779 17 NGERTVVLLGRTGNGKSATGNSILG 41 (277)
Q Consensus 17 ~~~~~i~lvG~~g~GKStlin~l~~ 41 (277)
.+...|+|.|..||||||+++.|..
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 3557899999999999999999863
No 500
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.027 Score=46.01 Aligned_cols=99 Identities=9% Similarity=0.041 Sum_probs=55.8
Q ss_pred HHHhhcCCCccEEEEEEeCC--CCCCHHHHHHH----HHHHHHh-CcCccCcEEEEEeC-CCCCCcccccHHHHhcccCC
Q 023779 95 KCLGMAKDGIHAFLVVFSVT--NRFSQEEETAV----HRLPNLF-GKNVFDYMIVVFTG-GDDLEDHEKTLEDFLGHECP 166 (277)
Q Consensus 95 ~~~~~~~~~~~~~l~v~d~~--~~~~~~~~~~~----~~l~~~~-~~~~~~~~ivv~nk-~D~~~~~~~~l~~~l~~~~~ 166 (277)
.....++.+.|++|||+|.+ .++. .+..+ .++.+-. -.++ |++|+.|| -|.... ....++.+. ..
T Consensus 202 plWr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~a--pLLVfANKkQDlp~A--ms~~EI~e~-L~ 274 (312)
T 3l2o_B 202 PQIQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGR--PLLVLSCISQGDVKR--MPCFYLAHE-LH 274 (312)
T ss_dssp HHHHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTC--CEEEEEEESSTTSCB--CCHHHHHHH-TT
T ss_pred HHHHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCC--eEEEEeCCcccccCC--CCHHHHHHH-cC
Confidence 33444566779999999998 3444 22222 2332211 1223 89999996 465444 333333222 00
Q ss_pred chHHHHHhhcCCeEEEEeCCCcccccChhHHHHHHHHHHHHHhh
Q 023779 167 KPLKEILQLCDNRCVLFDNKTKDEAKGTEQVRQLLSLVNSVIVQ 210 (277)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~L~~~i~~~~~~ 210 (277)
+.. ....+++ ..++|.++.|+.+-++++.+.+..
T Consensus 275 --L~~----l~r~W~I----q~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 275 --LNL----LNHPWLV----QDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp --GGG----GCSCEEE----EEEETTTCTTHHHHHHHHHHHSCC
T ss_pred --Ccc----CCCcEEE----EecccCCCcCHHHHHHHHHHHHHh
Confidence 221 1234443 256778889999999998877643
Done!