Query 023782
Match_columns 277
No_of_seqs 212 out of 2007
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 06:37:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0527 LysC Aspartokinases [A 100.0 3.4E-59 7.4E-64 447.0 27.1 241 28-277 103-343 (447)
2 PLN02551 aspartokinase 100.0 4.4E-58 9.6E-63 447.2 27.6 254 16-277 140-402 (521)
3 PRK09084 aspartate kinase III; 100.0 6.7E-55 1.4E-59 419.9 28.5 254 14-277 84-342 (448)
4 PRK09034 aspartate kinase; Rev 100.0 6.5E-55 1.4E-59 420.8 27.8 250 17-276 94-343 (454)
5 PRK06291 aspartate kinase; Pro 100.0 3.9E-53 8.4E-58 409.7 28.8 255 14-277 95-357 (465)
6 PRK09466 metL bifunctional asp 100.0 1.8E-53 3.9E-58 432.7 27.1 254 14-277 100-353 (810)
7 PRK09181 aspartate kinase; Val 100.0 1.2E-52 2.5E-57 405.6 27.0 243 16-277 113-365 (475)
8 PRK09436 thrA bifunctional asp 100.0 2.5E-52 5.4E-57 426.4 28.5 255 14-277 92-351 (819)
9 PRK05925 aspartate kinase; Pro 100.0 1.4E-50 2.9E-55 388.1 28.2 248 19-275 84-332 (440)
10 TIGR00657 asp_kinases aspartat 100.0 1.1E-49 2.4E-54 383.5 28.1 237 32-277 101-337 (441)
11 TIGR00656 asp_kin_monofn aspar 100.0 3E-49 6.6E-54 376.1 28.5 236 31-277 61-296 (401)
12 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 4.3E-48 9.3E-53 352.4 22.1 195 17-215 94-288 (288)
13 KOG0456 Aspartate kinase [Amin 100.0 1.2E-48 2.5E-53 357.5 17.8 257 12-276 163-428 (559)
14 PRK08961 bifunctional aspartat 100.0 1.1E-47 2.3E-52 395.3 26.5 254 15-277 93-358 (861)
15 PRK08841 aspartate kinase; Val 100.0 2.1E-47 4.6E-52 361.9 25.8 227 31-277 61-287 (392)
16 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 2.5E-47 5.4E-52 347.9 22.2 200 15-215 87-292 (292)
17 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 2.9E-47 6.3E-52 348.3 21.6 200 14-215 90-294 (294)
18 cd04243 AAK_AK-HSDH-like AAK_A 100.0 4.8E-47 1E-51 346.7 21.4 200 14-215 89-293 (293)
19 PRK08210 aspartate kinase I; R 100.0 2.7E-46 5.9E-51 356.2 27.3 240 31-277 66-305 (403)
20 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 7.8E-47 1.7E-51 346.3 21.6 202 14-216 98-305 (306)
21 cd04244 AAK_AK-LysC-like AAK_A 100.0 1.8E-46 3.9E-51 344.0 20.8 200 14-215 91-298 (298)
22 PRK06635 aspartate kinase; Rev 100.0 2E-45 4.4E-50 350.1 27.1 235 32-277 62-296 (404)
23 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 5.5E-46 1.2E-50 339.9 21.4 199 15-215 85-295 (295)
24 PRK08373 aspartate kinase; Val 100.0 1.8E-44 4E-49 334.9 23.6 204 31-249 97-303 (341)
25 PRK07431 aspartate kinase; Pro 100.0 1.1E-43 2.3E-48 352.8 27.6 242 30-277 60-304 (587)
26 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 8.3E-44 1.8E-48 323.4 20.5 188 16-215 107-304 (304)
27 TIGR02078 AspKin_pair Pyrococc 100.0 1.9E-41 4.2E-46 313.1 21.8 195 31-246 92-290 (327)
28 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 1.8E-38 3.8E-43 282.8 21.2 181 31-215 59-239 (239)
29 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 3E-38 6.5E-43 282.3 20.9 182 30-215 63-244 (244)
30 cd04234 AAK_AK AAK_AK: Amino A 100.0 1.3E-38 2.8E-43 281.7 18.2 200 13-215 14-227 (227)
31 cd04246 AAK_AK-DapG-like AAK_A 100.0 7E-38 1.5E-42 278.9 21.5 180 32-215 60-239 (239)
32 cd02115 AAK Amino Acid Kinases 100.0 1.8E-30 3.9E-35 231.2 19.9 180 31-214 61-248 (248)
33 PRK14558 pyrH uridylate kinase 100.0 7.8E-27 1.7E-31 207.0 20.6 182 11-216 20-230 (231)
34 cd04239 AAK_UMPK-like AAK_UMPK 99.9 4.2E-25 9.1E-30 195.6 19.5 158 33-214 62-228 (229)
35 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 2.5E-25 5.4E-30 199.7 18.0 166 34-214 65-250 (251)
36 PRK00358 pyrH uridylate kinase 99.9 6.5E-25 1.4E-29 194.5 17.7 156 35-214 66-230 (231)
37 PF00696 AA_kinase: Amino acid 99.9 4.4E-26 9.6E-31 202.2 8.9 113 89-203 124-242 (242)
38 PRK14557 pyrH uridylate kinase 99.9 1.3E-24 2.7E-29 194.5 16.6 163 32-218 67-240 (247)
39 PRK12314 gamma-glutamyl kinase 99.9 2.1E-24 4.5E-29 195.3 17.5 169 34-217 75-265 (266)
40 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 3.5E-24 7.7E-29 190.0 16.1 156 36-215 67-231 (231)
41 COG0528 PyrH Uridylate kinase 99.9 1.9E-23 4E-28 182.3 19.0 181 11-215 25-237 (238)
42 PRK14556 pyrH uridylate kinase 99.9 3E-23 6.4E-28 184.8 19.2 181 11-215 35-247 (249)
43 TIGR02075 pyrH_bact uridylate 99.9 1.2E-23 2.7E-28 186.8 16.1 156 36-215 68-233 (233)
44 PRK13402 gamma-glutamyl kinase 99.9 1.1E-22 2.3E-27 191.4 18.3 195 10-219 23-260 (368)
45 PRK05429 gamma-glutamyl kinase 99.9 2E-21 4.4E-26 183.5 18.0 171 35-219 75-264 (372)
46 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 1.7E-21 3.6E-26 171.7 16.1 146 33-214 60-220 (221)
47 TIGR01027 proB glutamate 5-kin 99.9 3E-21 6.5E-26 181.7 18.1 170 35-218 67-255 (363)
48 TIGR02076 pyrH_arch uridylate 99.9 5.3E-21 1.2E-25 168.4 15.3 147 33-214 59-220 (221)
49 cd04241 AAK_FomA-like AAK_FomA 99.9 1.4E-20 3.1E-25 168.7 16.1 145 48-207 82-236 (252)
50 PRK14058 acetylglutamate/acety 99.8 2.7E-20 5.9E-25 168.6 16.0 163 39-216 75-267 (268)
51 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.8 7.4E-20 1.6E-24 166.6 14.6 154 43-208 93-263 (279)
52 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.8 1.7E-19 3.6E-24 162.0 12.9 156 34-207 67-236 (252)
53 PRK00942 acetylglutamate kinas 99.8 3.3E-19 7.2E-24 162.6 14.9 156 43-216 102-282 (283)
54 TIGR00761 argB acetylglutamate 99.8 3.1E-19 6.7E-24 158.2 12.5 143 43-198 75-227 (231)
55 cd04238 AAK_NAGK-like AAK_NAGK 99.8 7.7E-19 1.7E-23 157.9 12.9 147 43-207 77-239 (256)
56 PLN02512 acetylglutamate kinas 99.8 2.5E-18 5.4E-23 158.8 16.0 155 48-215 129-308 (309)
57 cd04255 AAK_UMPK-MosAB AAK_UMP 99.8 1.6E-18 3.4E-23 156.5 13.9 191 12-215 46-262 (262)
58 COG0263 ProB Glutamate 5-kinas 99.8 9.8E-18 2.1E-22 153.9 18.8 194 10-218 24-261 (369)
59 CHL00202 argB acetylglutamate 99.8 5.1E-18 1.1E-22 155.0 16.8 159 42-215 101-283 (284)
60 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.8 2.1E-18 4.5E-23 155.4 13.9 157 34-208 65-244 (257)
61 PTZ00489 glutamate 5-kinase; P 99.8 1.5E-17 3.4E-22 150.1 18.2 169 36-217 72-260 (264)
62 cd04256 AAK_P5CS_ProBA AAK_P5C 99.8 6.7E-18 1.4E-22 154.1 15.8 168 36-214 94-283 (284)
63 PLN02418 delta-1-pyrroline-5-c 99.8 5.3E-18 1.1E-22 172.0 15.4 171 35-217 90-284 (718)
64 COG1608 Predicted archaeal kin 99.7 1.6E-16 3.5E-21 139.0 11.9 154 48-215 83-251 (252)
65 COG0548 ArgB Acetylglutamate k 99.7 9.5E-16 2.1E-20 137.4 15.6 159 41-215 79-264 (265)
66 TIGR01092 P5CS delta l-pyrroli 99.6 5.6E-15 1.2E-19 150.1 16.9 164 38-217 87-276 (715)
67 cd04236 AAK_NAGS-Urea AAK_NAGS 99.6 3.9E-14 8.4E-19 128.3 13.7 141 48-204 100-254 (271)
68 cd04235 AAK_CK AAK_CK: Carbama 99.6 1E-13 2.3E-18 127.3 16.0 120 90-214 172-307 (308)
69 PRK12353 putative amino acid k 99.6 1.2E-13 2.5E-18 127.9 16.2 123 89-216 175-314 (314)
70 cd04252 AAK_NAGK-fArgBP AAK_NA 99.6 1.3E-13 2.9E-18 123.6 15.6 145 41-204 72-231 (248)
71 TIGR00746 arcC carbamate kinas 99.5 5.7E-13 1.2E-17 122.9 16.5 121 90-215 173-309 (310)
72 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.5 3.5E-13 7.6E-18 123.0 14.0 147 42-207 94-263 (280)
73 PRK05279 N-acetylglutamate syn 99.5 6.5E-13 1.4E-17 128.3 15.2 153 48-217 105-292 (441)
74 TIGR01890 N-Ac-Glu-synth amino 99.4 1.7E-12 3.8E-17 125.0 15.0 117 90-218 151-281 (429)
75 PRK12686 carbamate kinase; Rev 99.4 1.1E-12 2.5E-17 120.6 12.2 123 89-215 173-311 (312)
76 cd04240 AAK_UC AAK_UC: Unchara 99.4 8.3E-13 1.8E-17 115.1 9.0 103 89-208 81-187 (203)
77 PRK12454 carbamate kinase-like 99.4 4.4E-12 9.5E-17 116.7 12.7 123 90-216 176-313 (313)
78 PRK12354 carbamate kinase; Rev 99.4 1.2E-11 2.7E-16 113.4 14.9 124 89-217 165-301 (307)
79 KOG1154 Gamma-glutamyl kinase 99.3 1.2E-11 2.5E-16 108.1 9.9 160 39-214 92-264 (285)
80 PRK09411 carbamate kinase; Rev 99.3 5.5E-11 1.2E-15 108.4 14.0 118 90-215 167-296 (297)
81 PRK12352 putative carbamate ki 99.2 1.4E-10 3E-15 107.3 12.1 123 89-216 176-315 (316)
82 PRK04531 acetylglutamate kinas 99.1 1.4E-09 3E-14 103.8 14.5 113 92-217 122-250 (398)
83 PLN02825 amino-acid N-acetyltr 99.1 8.2E-10 1.8E-14 108.2 12.1 109 53-178 111-235 (515)
84 COG2054 Uncharacterized archae 98.9 1.6E-09 3.6E-14 91.3 6.0 83 126-216 118-210 (212)
85 COG0549 ArcC Carbamate kinase 98.5 5.2E-07 1.1E-11 81.4 10.0 123 90-216 175-312 (312)
86 cd04919 ACT_AK-Hom3_2 ACT doma 98.2 2.7E-06 5.8E-11 60.1 5.0 37 241-277 1-37 (66)
87 cd04937 ACT_AKi-DapG-BS_2 ACT 98.2 3.7E-06 8.1E-11 59.5 5.1 37 241-277 1-37 (64)
88 cd04922 ACT_AKi-HSDH-ThrA_2 AC 98.2 3.7E-06 8.1E-11 59.1 5.1 37 241-277 1-37 (66)
89 PF13840 ACT_7: ACT domain ; P 98.1 3.4E-06 7.4E-11 60.2 4.4 40 237-276 2-42 (65)
90 cd04915 ACT_AK-Ectoine_2 ACT d 98.1 6E-06 1.3E-10 59.0 5.2 36 241-277 2-37 (66)
91 cd04924 ACT_AK-Arch_2 ACT doma 98.0 1E-05 2.2E-10 56.7 5.0 37 241-277 1-37 (66)
92 PRK06291 aspartate kinase; Pro 98.0 1.5E-05 3.3E-10 77.8 7.8 96 182-277 335-434 (465)
93 cd04916 ACT_AKiii-YclM-BS_2 AC 98.0 1.5E-05 3.3E-10 55.9 5.1 37 241-277 1-37 (66)
94 cd04932 ACT_AKiii-LysC-EC_1 AC 97.9 1.5E-05 3.3E-10 58.5 5.0 37 241-277 1-37 (75)
95 cd04933 ACT_AK1-AT_1 ACT domai 97.9 1.8E-05 3.9E-10 58.6 5.0 37 241-277 1-37 (78)
96 PLN02551 aspartokinase 97.9 4.3E-05 9.4E-10 75.5 9.0 94 182-277 380-480 (521)
97 cd04918 ACT_AK1-AT_2 ACT domai 97.9 1.9E-05 4.1E-10 56.1 4.8 35 242-277 2-36 (65)
98 COG0527 LysC Aspartokinases [A 97.9 3.8E-05 8.3E-10 74.5 8.2 93 183-276 322-418 (447)
99 PRK09436 thrA bifunctional asp 97.9 3.9E-05 8.5E-10 79.7 8.6 95 183-277 330-432 (819)
100 cd04935 ACT_AKiii-DAPDC_1 ACT 97.9 2.4E-05 5.2E-10 57.4 5.0 37 241-277 1-37 (75)
101 cd04934 ACT_AK-Hom3_1 CT domai 97.8 2.7E-05 5.8E-10 56.9 4.8 37 241-277 1-37 (73)
102 cd04912 ACT_AKiii-LysC-EC-like 97.8 4.2E-05 9E-10 55.9 5.1 37 241-277 1-37 (75)
103 PRK09034 aspartate kinase; Rev 97.7 5.5E-05 1.2E-09 73.7 6.4 94 183-277 323-421 (454)
104 cd04921 ACT_AKi-HSDH-ThrA-like 97.7 6.8E-05 1.5E-09 54.9 5.1 37 241-277 1-37 (80)
105 cd04890 ACT_AK-like_1 ACT doma 97.7 6.6E-05 1.4E-09 52.4 4.7 35 243-277 2-36 (62)
106 TIGR00657 asp_kinases aspartat 97.7 0.00013 2.9E-09 70.6 8.4 95 183-277 316-414 (441)
107 cd04936 ACT_AKii-LysC-BS-like_ 97.6 0.00013 2.8E-09 50.4 5.0 36 242-277 1-36 (63)
108 PRK06635 aspartate kinase; Rev 97.6 0.00021 4.5E-09 68.4 7.9 95 183-277 275-376 (404)
109 cd04892 ACT_AK-like_2 ACT doma 97.6 0.00015 3.3E-09 49.8 5.0 36 242-277 1-36 (65)
110 TIGR00656 asp_kin_monofn aspar 97.6 0.0002 4.3E-09 68.4 7.4 94 183-276 275-372 (401)
111 cd04868 ACT_AK-like ACT domain 97.6 0.00017 3.6E-09 48.6 5.0 36 242-277 1-36 (60)
112 PRK05925 aspartate kinase; Pro 97.5 0.00039 8.5E-09 67.5 9.2 90 186-277 316-407 (440)
113 cd04923 ACT_AK-LysC-DapG-like_ 97.5 0.00019 4E-09 49.6 5.0 36 242-277 1-36 (63)
114 PRK09181 aspartate kinase; Val 97.5 0.00017 3.8E-09 70.5 5.8 92 182-277 343-437 (475)
115 cd04917 ACT_AKiii-LysC-EC_2 AC 97.5 0.00019 4.1E-09 50.5 4.3 35 241-277 1-35 (64)
116 PRK08210 aspartate kinase I; R 97.4 0.00042 9E-09 66.4 7.8 112 163-277 260-375 (403)
117 cd04920 ACT_AKiii-DAPDC_2 ACT 97.3 0.00035 7.5E-09 49.3 4.4 34 242-275 1-34 (63)
118 PRK07431 aspartate kinase; Pro 97.3 0.00038 8.3E-09 69.9 6.1 44 233-276 511-554 (587)
119 PRK09084 aspartate kinase III; 97.3 0.00091 2E-08 65.1 8.5 109 164-277 296-418 (448)
120 PRK09466 metL bifunctional asp 97.3 0.00073 1.6E-08 70.2 8.1 94 183-277 332-427 (810)
121 cd04891 ACT_AK-LysC-DapG-like_ 97.0 0.0011 2.4E-08 44.9 4.5 34 242-277 1-34 (61)
122 PRK08841 aspartate kinase; Val 96.9 0.0018 3.9E-08 62.0 6.2 83 186-277 269-351 (392)
123 cd04913 ACT_AKii-LysC-BS-like_ 96.9 0.0017 3.8E-08 45.9 4.6 35 241-277 1-35 (75)
124 cd04914 ACT_AKi-DapG-BS_1 ACT 96.8 0.0023 5.1E-08 45.7 4.8 34 242-277 2-35 (67)
125 KOG0456 Aspartate kinase [Amin 96.7 0.00049 1.1E-08 64.9 0.6 96 180-277 405-507 (559)
126 PRK08961 bifunctional aspartat 96.6 0.0068 1.5E-07 63.7 8.6 92 182-277 336-432 (861)
127 KOG2436 Acetylglutamate kinase 96.3 0.0078 1.7E-07 58.5 5.9 118 41-176 170-301 (520)
128 COG3830 ACT domain-containing 95.9 0.0099 2.1E-07 44.9 3.5 35 240-277 2-36 (90)
129 cd04910 ACT_AK-Ectoine_1 ACT d 95.4 0.036 7.9E-07 40.2 5.0 35 242-276 2-36 (71)
130 PF01842 ACT: ACT domain; Int 94.9 0.017 3.7E-07 39.9 2.1 27 251-277 7-33 (66)
131 cd04870 ACT_PSP_1 CT domains f 92.6 0.17 3.8E-06 36.5 3.8 32 243-277 1-32 (75)
132 PRK00194 hypothetical protein; 91.3 0.34 7.4E-06 36.1 4.2 34 241-277 3-36 (90)
133 cd04893 ACT_GcvR_1 ACT domains 90.9 0.43 9.2E-06 34.7 4.3 32 243-277 3-34 (77)
134 cd04888 ACT_PheB-BS C-terminal 90.9 0.28 6.1E-06 34.9 3.2 31 244-277 3-33 (76)
135 PF13740 ACT_6: ACT domain; PD 90.8 0.32 7E-06 35.3 3.5 33 242-277 3-35 (76)
136 cd04911 ACT_AKiii-YclM-BS_1 AC 89.9 0.36 7.9E-06 35.5 3.1 34 242-275 2-35 (76)
137 cd04872 ACT_1ZPV ACT domain pr 89.8 0.52 1.1E-05 35.0 4.0 33 242-277 2-34 (88)
138 cd04875 ACT_F4HF-DF N-terminal 89.3 0.63 1.4E-05 33.3 4.0 32 243-277 1-32 (74)
139 cd04908 ACT_Bt0572_1 N-termina 88.3 0.95 2.1E-05 31.6 4.3 25 251-275 8-32 (66)
140 PRK04435 hypothetical protein; 86.4 1.2 2.5E-05 36.8 4.4 37 238-277 66-102 (147)
141 COG1058 CinA Predicted nucleot 84.4 5.9 0.00013 35.8 8.3 68 47-140 22-89 (255)
142 cd04889 ACT_PDH-BS-like C-term 82.7 1.7 3.7E-05 29.0 3.2 25 251-275 5-29 (56)
143 cd04869 ACT_GcvR_2 ACT domains 81.9 2.5 5.4E-05 30.4 4.1 31 244-277 2-32 (81)
144 cd04882 ACT_Bt0572_2 C-termina 81.6 0.86 1.9E-05 31.1 1.4 25 251-275 6-30 (65)
145 cd02116 ACT ACT domains are co 80.2 2.8 6.1E-05 26.1 3.5 25 253-277 7-31 (60)
146 cd04871 ACT_PSP_2 ACT domains 79.6 0.86 1.9E-05 33.9 0.9 33 243-277 1-33 (84)
147 PRK11790 D-3-phosphoglycerate 79.3 38 0.00082 32.7 12.4 28 39-68 156-183 (409)
148 cd04884 ACT_CBS C-terminal ACT 78.6 2.4 5.3E-05 29.9 3.0 26 251-276 6-31 (72)
149 COG4747 ACT domain-containing 77.3 5.2 0.00011 32.0 4.7 81 186-275 18-100 (142)
150 PRK05788 cobalamin biosynthesi 76.8 63 0.0014 30.1 12.6 133 111-273 83-226 (315)
151 COG3603 Uncharacterized conser 76.5 7.6 0.00016 31.0 5.4 47 230-276 52-98 (128)
152 cd04925 ACT_ACR_2 ACT domain-c 76.5 4.5 9.7E-05 29.0 3.9 30 242-274 1-30 (74)
153 cd04909 ACT_PDH-BS C-terminal 75.5 3.4 7.4E-05 28.7 3.0 25 251-275 8-32 (69)
154 cd04895 ACT_ACR_1 ACT domain-c 74.3 6.6 0.00014 28.5 4.3 31 242-275 2-32 (72)
155 cd04880 ACT_AAAH-PDT-like ACT 74.2 3.9 8.6E-05 29.1 3.1 24 252-275 7-30 (75)
156 PRK06737 acetolactate synthase 74.0 3.7 8.1E-05 30.1 3.0 25 252-276 10-34 (76)
157 cd04883 ACT_AcuB C-terminal AC 73.5 6.5 0.00014 27.3 4.1 25 251-275 8-32 (72)
158 COG0462 PrsA Phosphoribosylpyr 72.3 35 0.00077 31.8 9.6 96 35-147 97-195 (314)
159 cd04905 ACT_CM-PDT C-terminal 72.3 4.5 9.8E-05 29.2 3.1 25 251-275 8-32 (80)
160 cd00885 cinA Competence-damage 72.0 31 0.00067 29.0 8.6 69 46-140 19-87 (170)
161 cd04899 ACT_ACR-UUR-like_2 C-t 71.9 9 0.0002 26.4 4.5 30 243-275 2-31 (70)
162 PRK03673 hypothetical protein; 71.8 23 0.00049 34.2 8.6 68 47-140 22-89 (396)
163 cd04886 ACT_ThrD-II-like C-ter 71.8 4.9 0.00011 27.4 3.1 25 251-275 5-29 (73)
164 PF13291 ACT_4: ACT domain; PD 71.1 7.8 0.00017 27.8 4.1 32 242-276 7-38 (80)
165 cd04926 ACT_ACR_4 C-terminal 70.4 9.1 0.0002 27.2 4.3 24 251-274 8-31 (72)
166 PRK03670 competence damage-ind 70.1 26 0.00055 31.6 8.0 70 46-140 20-89 (252)
167 PRK13562 acetolactate synthase 69.7 5.1 0.00011 30.0 2.9 25 252-276 10-34 (84)
168 PRK11152 ilvM acetolactate syn 68.7 5.4 0.00012 29.3 2.8 25 252-276 11-35 (76)
169 PF11760 CbiG_N: Cobalamin syn 68.6 10 0.00022 28.4 4.3 49 90-142 26-78 (84)
170 cd04896 ACT_ACR-like_3 ACT dom 68.6 9 0.0002 28.0 4.0 29 243-274 2-30 (75)
171 cd04873 ACT_UUR-ACR-like ACT d 68.2 12 0.00026 25.5 4.5 30 243-275 2-31 (70)
172 cd04900 ACT_UUR-like_1 ACT dom 67.5 12 0.00025 26.6 4.3 29 243-274 3-31 (73)
173 PRK08178 acetolactate synthase 66.5 6.3 0.00014 30.3 2.9 32 242-276 9-40 (96)
174 PF00994 MoCF_biosynth: Probab 66.2 40 0.00087 27.1 7.9 68 46-139 17-84 (144)
175 cd04903 ACT_LSD C-terminal ACT 64.5 7.6 0.00016 26.3 2.8 25 252-276 7-31 (71)
176 PRK01215 competence damage-ind 63.9 39 0.00084 30.6 8.0 69 46-140 23-91 (264)
177 cd04878 ACT_AHAS N-terminal AC 63.6 8.9 0.00019 26.0 3.1 25 252-276 8-32 (72)
178 cd04874 ACT_Af1403 N-terminal 63.6 9.1 0.0002 26.1 3.1 26 251-276 7-32 (72)
179 cd04927 ACT_ACR-like_2 Second 63.4 12 0.00025 27.1 3.7 29 243-274 2-30 (76)
180 cd04902 ACT_3PGDH-xct C-termin 61.7 6.8 0.00015 27.1 2.2 24 251-274 6-29 (73)
181 cd04897 ACT_ACR_3 ACT domain-c 60.5 17 0.00037 26.5 4.1 30 242-274 2-31 (75)
182 TIGR00177 molyb_syn molybdenum 60.3 74 0.0016 25.7 8.4 65 47-137 28-92 (144)
183 PF13710 ACT_5: ACT domain; PD 59.4 10 0.00022 26.5 2.7 24 253-276 1-24 (63)
184 PRK11589 gcvR glycine cleavage 59.1 12 0.00025 32.4 3.5 29 242-273 96-124 (190)
185 cd04879 ACT_3PGDH-like ACT_3PG 58.6 13 0.00027 25.0 3.1 25 251-275 6-30 (71)
186 PRK00549 competence damage-ind 56.8 56 0.0012 31.6 8.2 69 46-140 20-88 (414)
187 COG2150 Predicted regulator of 55.7 24 0.00051 29.7 4.6 35 240-275 92-126 (167)
188 cd04881 ACT_HSDH-Hom ACT_HSDH_ 55.2 15 0.00033 25.3 3.1 25 252-276 8-32 (79)
189 cd04887 ACT_MalLac-Enz ACT_Mal 54.0 18 0.00039 25.2 3.3 25 252-276 7-31 (74)
190 cd04877 ACT_TyrR N-terminal AC 52.6 24 0.00051 24.9 3.8 30 244-276 3-32 (74)
191 TIGR00200 cinA_nterm competenc 51.8 87 0.0019 30.3 8.6 67 47-139 21-87 (413)
192 PF02254 TrkA_N: TrkA-N domain 51.4 61 0.0013 24.5 6.3 69 39-147 3-71 (116)
193 COG1778 Low specificity phosph 51.3 14 0.0003 31.2 2.6 51 144-206 11-61 (170)
194 cd04904 ACT_AAAH ACT domain of 50.7 21 0.00046 25.5 3.3 24 252-275 8-31 (74)
195 PRK08577 hypothetical protein; 48.5 35 0.00076 27.4 4.6 34 240-276 55-88 (136)
196 TIGR02667 moaB_proteo molybden 48.2 1.1E+02 0.0023 25.5 7.6 70 45-138 21-90 (163)
197 smart00852 MoCF_biosynth Proba 48.1 1.2E+02 0.0025 24.0 7.6 69 45-139 17-85 (135)
198 cd00758 MoCF_BD MoCF_BD: molyb 46.9 1.4E+02 0.0031 23.6 7.9 66 46-137 19-84 (133)
199 TIGR01327 PGDH D-3-phosphoglyc 46.8 29 0.00062 34.6 4.6 28 39-68 143-170 (525)
200 cd05014 SIS_Kpsf KpsF-like pro 46.5 1E+02 0.0023 23.6 7.0 78 116-202 1-80 (128)
201 cd04901 ACT_3PGDH C-terminal A 46.5 15 0.00033 25.1 1.9 23 251-273 6-28 (69)
202 PRK13581 D-3-phosphoglycerate 46.1 44 0.00095 33.3 5.8 27 39-67 145-171 (526)
203 cd04931 ACT_PAH ACT domain of 44.8 29 0.00064 26.1 3.3 24 252-275 22-45 (90)
204 cd04929 ACT_TPH ACT domain of 44.6 32 0.00068 24.8 3.4 24 252-275 8-31 (74)
205 cd00886 MogA_MoaB MogA_MoaB fa 42.9 1.5E+02 0.0033 24.0 7.7 68 47-138 21-88 (152)
206 cd04928 ACT_TyrKc Uncharacteri 42.3 26 0.00057 25.0 2.6 28 244-274 4-31 (68)
207 COG0303 MoeA Molybdopterin bio 41.1 1E+02 0.0022 29.8 7.2 72 47-146 204-275 (404)
208 COG0499 SAM1 S-adenosylhomocys 40.7 40 0.00087 32.3 4.2 70 60-149 171-241 (420)
209 TIGR02726 phenyl_P_delta pheny 40.2 23 0.00051 29.8 2.4 12 144-155 10-21 (169)
210 PF13511 DUF4124: Domain of un 39.9 46 0.00099 22.5 3.5 28 131-158 4-33 (60)
211 cd04885 ACT_ThrD-I Tandem C-te 38.7 32 0.0007 23.9 2.6 25 251-276 5-29 (68)
212 PRK08198 threonine dehydratase 38.1 49 0.0011 31.6 4.6 39 236-277 322-360 (404)
213 cd04876 ACT_RelA-SpoT ACT dom 38.1 37 0.00079 21.9 2.8 24 252-275 6-29 (71)
214 COG4492 PheB ACT domain-contai 38.1 33 0.00073 28.0 2.8 27 251-277 79-105 (150)
215 cd04930 ACT_TH ACT domain of t 37.9 39 0.00085 26.6 3.2 24 252-275 49-72 (115)
216 PRK03092 ribose-phosphate pyro 37.4 3.3E+02 0.0073 25.1 10.2 34 36-69 83-117 (304)
217 TIGR00719 sda_beta L-serine de 35.2 40 0.00088 29.3 3.2 24 252-275 156-179 (208)
218 smart00460 TGc Transglutaminas 35.0 49 0.0011 22.4 3.1 25 41-67 8-32 (68)
219 PF01841 Transglut_core: Trans 33.1 38 0.00083 25.4 2.4 26 41-68 53-78 (113)
220 PRK03659 glutathione-regulated 32.8 2.1E+02 0.0045 29.0 8.3 28 37-66 403-430 (601)
221 PF00289 CPSase_L_chain: Carba 32.1 15 0.00033 28.7 -0.0 30 38-69 6-35 (110)
222 PTZ00445 p36-lilke protein; Pr 31.6 3.3E+02 0.0072 24.1 8.2 24 47-70 30-53 (219)
223 PF11713 Peptidase_C80: Peptid 30.1 55 0.0012 27.3 3.0 33 243-275 105-140 (157)
224 COG0329 DapA Dihydrodipicolina 28.5 3E+02 0.0064 25.3 7.9 54 48-109 27-80 (299)
225 PRK11898 prephenate dehydratas 28.3 3.6E+02 0.0078 24.5 8.4 102 160-275 122-228 (283)
226 TIGR01693 UTase_glnD [Protein- 28.2 96 0.0021 32.9 5.1 34 239-275 777-810 (850)
227 COG0077 PheA Prephenate dehydr 28.2 3.2E+02 0.007 25.1 7.9 100 160-275 121-225 (279)
228 PRK01259 ribose-phosphate pyro 27.7 1.5E+02 0.0033 27.4 5.9 92 35-143 93-186 (309)
229 cd00952 CHBPH_aldolase Trans-o 27.6 1.5E+02 0.0033 27.3 5.8 80 48-146 31-111 (309)
230 PRK14324 glmM phosphoglucosami 27.6 3.8E+02 0.0082 25.9 8.9 113 15-138 155-272 (446)
231 PRK09417 mogA molybdenum cofac 27.0 4E+02 0.0088 22.9 8.0 71 46-138 23-93 (193)
232 TIGR01251 ribP_PPkin ribose-ph 26.6 1.5E+02 0.0033 27.3 5.6 94 36-146 95-190 (308)
233 cd04817 PA_VapT_like PA_VapT_l 26.3 3.6E+02 0.0077 22.0 7.4 65 111-177 52-128 (139)
234 cd03089 PMM_PGM The phosphoman 25.9 4.2E+02 0.0091 25.5 8.8 112 14-137 144-262 (443)
235 PRK10680 molybdopterin biosynt 25.8 3.9E+02 0.0085 25.8 8.5 71 47-146 205-275 (411)
236 PRK14317 glmM phosphoglucosami 25.6 4.4E+02 0.0095 25.6 9.0 114 14-138 167-285 (465)
237 cd04819 PA_2 PA_2: Protease-as 25.2 2.4E+02 0.0052 22.2 5.9 40 114-153 43-85 (127)
238 PRK06545 prephenate dehydrogen 25.0 61 0.0013 30.4 2.7 31 240-273 289-319 (359)
239 cd03088 ManB ManB is a bacteri 24.9 6.4E+02 0.014 24.4 10.5 120 14-148 145-271 (459)
240 cd02129 PA_hSPPL_like PA_hSPPL 24.8 3.6E+02 0.0077 21.4 7.0 63 115-177 44-109 (120)
241 cd00887 MoeA MoeA family. Memb 24.7 4.3E+02 0.0092 25.2 8.5 67 47-140 196-262 (394)
242 PF06580 His_kinase: Histidine 24.4 82 0.0018 22.9 2.8 43 3-46 1-43 (82)
243 PRK14690 molybdopterin biosynt 24.1 4.2E+02 0.0092 25.6 8.4 70 47-145 221-290 (419)
244 KOG2446 Glucose-6-phosphate is 23.8 1.6E+02 0.0035 28.9 5.3 37 118-154 153-194 (546)
245 PF01751 Toprim: Toprim domain 23.5 2.8E+02 0.006 20.6 5.7 21 129-149 50-70 (100)
246 PRK05007 PII uridylyl-transfer 23.1 1.2E+02 0.0027 32.3 4.8 33 239-274 806-838 (884)
247 PF09413 DUF2007: Domain of un 22.9 74 0.0016 21.9 2.2 31 40-70 4-34 (67)
248 PRK02269 ribose-phosphate pyro 22.7 3.3E+02 0.0071 25.3 7.1 93 35-144 98-194 (320)
249 PHA01735 hypothetical protein 21.9 2.1E+02 0.0046 20.6 4.3 49 18-71 8-58 (76)
250 COG2716 GcvR Glycine cleavage 21.9 1E+02 0.0023 26.2 3.2 28 243-273 94-121 (176)
251 cd04906 ACT_ThrD-I_1 First of 21.7 64 0.0014 23.5 1.8 22 250-271 7-28 (85)
252 TIGR01670 YrbI-phosphatas 3-de 21.6 2.1E+02 0.0045 23.2 5.0 28 143-170 3-31 (154)
253 PRK03562 glutathione-regulated 21.5 6E+02 0.013 25.9 9.2 29 36-66 402-430 (621)
254 TIGR01127 ilvA_1Cterm threonin 21.4 1.1E+02 0.0025 28.7 3.8 39 234-275 298-336 (380)
255 PRK00934 ribose-phosphate pyro 20.9 3E+02 0.0065 25.0 6.4 92 35-143 91-182 (285)
256 PRK06349 homoserine dehydrogen 20.6 91 0.002 30.2 3.0 27 251-277 355-381 (426)
257 PRK08818 prephenate dehydrogen 20.6 91 0.002 29.8 2.9 23 253-275 305-327 (370)
258 COG1658 Small primase-like pro 20.3 1.5E+02 0.0033 23.9 3.7 23 127-149 43-65 (127)
No 1
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-59 Score=447.01 Aligned_cols=241 Identities=41% Similarity=0.633 Sum_probs=224.9
Q ss_pred cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEec
Q 023782 28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT 107 (277)
Q Consensus 28 ~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~ 107 (277)
.++++++.+|+++|+||++|+.+++.+|+++|++|.+++++++++.+++.++++.+....+...+..+++ .+.|||++
T Consensus 103 ~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~ 180 (447)
T COG0527 103 LGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVA 180 (447)
T ss_pred ccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEec
Confidence 3578999999999999999999999999999999999999999999988888877665444333777776 78999999
Q ss_pred CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023782 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
||+|.+++|+++|||||||||+|++||.+|+|+++.||||||||||+|||++|+|++|++|||+||.||+++|++++||+
T Consensus 181 GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpr 260 (447)
T COG0527 181 GFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPR 260 (447)
T ss_pred CceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHh
Q 023782 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267 (277)
Q Consensus 188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~ 267 (277)
|++|+++++||++|+|+++|+.+||+|.+...+ ..+.+++|+.++|+++|++.|.+|...+|+++++|..|++
T Consensus 261 av~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~-------~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~ 333 (447)
T COG0527 261 AVEPAMRSGIPLRIKNTFNPDAPGTLITAETES-------DEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAE 333 (447)
T ss_pred HHHHHHhcCCcEEEEecCCCCCCceEEecCCcC-------CCCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHH
Confidence 999999999999999999999999999987543 1268999999999999999999999999999999999999
Q ss_pred CCCcEEEEeC
Q 023782 268 VGANVIMISQ 277 (277)
Q Consensus 268 ~~I~V~~isq 277 (277)
+||+|+||+|
T Consensus 334 ~~i~v~~I~q 343 (447)
T COG0527 334 AGINVDLITQ 343 (447)
T ss_pred cCCcEEEEEe
Confidence 9999999987
No 2
>PLN02551 aspartokinase
Probab=100.00 E-value=4.4e-58 Score=447.22 Aligned_cols=254 Identities=27% Similarity=0.473 Sum_probs=229.7
Q ss_pred HHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHH
Q 023782 16 IRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK 90 (277)
Q Consensus 16 i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 90 (277)
+...++.|++++++ +++++.+|+++|+||+||+++++.+|++.|+++.++|++++++++++.|+++.++ +.+.+
T Consensus 140 ~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~~ 218 (521)
T PLN02551 140 VEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYP 218 (521)
T ss_pred HHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhHH
Confidence 44556677777664 6789999999999999999999999999999999999999977888888877665 45556
Q ss_pred HHHHHhhc---CCCceEEecCccccC-CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEe
Q 023782 91 RLEKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR 166 (277)
Q Consensus 91 ~i~~~l~~---~~~~VpVv~G~i~~~-~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~ 166 (277)
.+++.+.. ..+.|||++||+|.+ .+|+++|||||||||+|+++|++|+|+++.||||||||||+|||.+|+|++++
T Consensus 219 ~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~ 298 (521)
T PLN02551 219 AVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVP 298 (521)
T ss_pred HHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEec
Confidence 66665531 245899999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred eeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEE
Q 023782 167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246 (277)
Q Consensus 167 ~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isv 246 (277)
+|||+||.||+++|++++||+|+.||++++||++|+|+++|+.+||+|.+.... ....+++|+.++|+++|+|
T Consensus 299 ~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~-------~~~~v~~It~~~~v~li~i 371 (521)
T PLN02551 299 YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDM-------SKAVLTSIVLKRNVTMLDI 371 (521)
T ss_pred ccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEeccccc-------CCCcccceecCCCeEEEEE
Confidence 999999999999999999999999999999999999999999999999865321 2357999999999999999
Q ss_pred ecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 247 vg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.|.+|.+.+|+++++|+.|+++||+|+||+|
T Consensus 372 ~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 372 VSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred ecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence 9999999999999999999999999999986
No 3
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=6.7e-55 Score=419.91 Aligned_cols=254 Identities=30% Similarity=0.523 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHhhhcC---CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHH
Q 023782 14 EFIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK 90 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~---~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~ 90 (277)
+.++..++.|++++++ +++++.+|.++|+||+||+++++.+|+++|+++.++++++++ .+++.|++++++++.+..
T Consensus 84 ~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i-~t~~~~~~~~~~~~~~~~ 162 (448)
T PRK09084 84 EEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVM-RTDDRFGRAEPDVAALAE 162 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeE-EecCCCCcccccHHHHHH
Confidence 4577888889988877 478899999999999999999999999999999999999984 566778877888766766
Q ss_pred HHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 91 ~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
.+.+.+.+ ..+ |||++||+|.+.+|+++||||||||++|+++|.+|+|+++++|||||||||+|||++|+|+++++|
T Consensus 163 ~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~i 241 (448)
T PRK09084 163 LAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEI 241 (448)
T ss_pred HHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccC
Confidence 55554432 245 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEec
Q 023782 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG 248 (277)
Q Consensus 169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg 248 (277)
+|+||.+|+++|++++||+++.++++++||++|+|+++|+.+||+|.+... ..+.+++|+.++|+++|+|.+
T Consensus 242 s~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~--------~~~~v~~it~~~~i~lItv~~ 313 (448)
T PRK09084 242 SFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE--------NPPLFRAIALRRNQTLLTLHS 313 (448)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC--------CCCeeEEEEeeCCEEEEEEec
Confidence 999999999999999999999999999999999999999999999987532 124799999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 249 TGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 249 ~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.+|.+.+|+++++|+.|++++|+|+||+|
T Consensus 314 ~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 314 LNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred CCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 99999999999999999999999999986
No 4
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=6.5e-55 Score=420.78 Aligned_cols=250 Identities=27% Similarity=0.421 Sum_probs=224.0
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHh
Q 023782 17 RSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96 (277)
Q Consensus 17 ~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l 96 (277)
..+++.|...++ ..+++.+|.++|+||+||+.+++.+|+++|+++.+++++++++++++.++++.++. .+.+.+.+++
T Consensus 94 ~~~l~~l~~~~~-~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~-~~~~~~~~~~ 171 (454)
T PRK09034 94 EEILEHLANLAS-RNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP-ESYDNLKKLR 171 (454)
T ss_pred HHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcH-hhHHHHHHHH
Confidence 344444444443 46788999999999999999999999999999999999999777888888766653 3556777666
Q ss_pred hcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023782 97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176 (277)
Q Consensus 97 ~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l 176 (277)
. .+.|||++||+|.+.+|+++|||||||||+|+++|.+|+|+++++|||||||||+|||.+|+|+++++|||+||.+|
T Consensus 172 ~--~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~el 249 (454)
T PRK09034 172 D--RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMREL 249 (454)
T ss_pred h--cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHH
Confidence 5 56799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchh
Q 023782 177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPG 256 (277)
Q Consensus 177 ~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~g 256 (277)
+++|+++|||+|+.+|++++||++|+|+++|+.+||+|.+..... ....+++|+.++|+++|++.+.+|.+.+|
T Consensus 250 a~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~g 323 (454)
T PRK09034 250 SYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREVG 323 (454)
T ss_pred HhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCcc
Confidence 999999999999999999999999999999999999998654211 12479999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEe
Q 023782 257 TANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 257 v~a~if~~L~~~~I~V~~is 276 (277)
+++++|+.|+++||+|+|++
T Consensus 324 ~~a~if~~la~~~I~Vd~i~ 343 (454)
T PRK09034 324 FGRKVLQILEDHGISYEHMP 343 (454)
T ss_pred HHHHHHHHHHHcCCeEEEEc
Confidence 99999999999999999984
No 5
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=3.9e-53 Score=409.71 Aligned_cols=255 Identities=43% Similarity=0.656 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023782 14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F 85 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~ 85 (277)
+.+...++.|++++.+ +++++.+|.++|+||+||+++++.+|+++|++|.+++++++.+++.+.++.+.++ +
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~ 174 (465)
T PRK06291 95 KTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTY 174 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhH
Confidence 3455667777777763 5678899999999999999999999999999999999999877787777765443 3
Q ss_pred hHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 86 ~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
....+.++.+++ .+.|||++||+|.+++|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++
T Consensus 175 ~~~~~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i 252 (465)
T PRK06291 175 ERVKERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVI 252 (465)
T ss_pred HHHHHHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence 334455666666 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEE
Q 023782 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN 245 (277)
Q Consensus 166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Is 245 (277)
++++|+|+.+++++|++++||+|+.+|+++|||++|.|+++|+++||+|.+.... ..+.+++|++++|+++|+
T Consensus 253 ~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~-------~~~~V~~It~~~~valIs 325 (465)
T PRK06291 253 PKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES-------SKRVVKAVTLIKNVALIN 325 (465)
T ss_pred cccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc-------cCcccceEEeeCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999865321 235799999999999999
Q ss_pred EecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 246 vvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|.+|.+.+|+++++|++|+++||+|+|++|
T Consensus 326 I~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq 357 (465)
T PRK06291 326 ISGAGMVGVPGTAARIFSALAEEGVNVIMISQ 357 (465)
T ss_pred EeCCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 99999999999999999999999999999987
No 6
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=1.8e-53 Score=432.75 Aligned_cols=254 Identities=30% Similarity=0.474 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHH
Q 023782 14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 93 (277)
+.++..++.|+++++++++++.+|.++|+||+||+++++.+|+++|+++.++++++++. +++. +...+++..+.++++
T Consensus 100 ~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~ 177 (810)
T PRK09466 100 SRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQ 177 (810)
T ss_pred HHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHH
Confidence 34667788888888899999999999999999999999999999999999999999843 4333 344565556678888
Q ss_pred HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023782 94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173 (277)
Q Consensus 94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~ 173 (277)
+++....+.|||++||+|.+.+|+++|+|||||||+|+++|++|+|++++||||||||||+|||.+|+|+++++|||+||
T Consensus 178 ~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea 257 (810)
T PRK09466 178 QLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEA 257 (810)
T ss_pred HHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHH
Confidence 88864345899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCC
Q 023782 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253 (277)
Q Consensus 174 ~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~ 253 (277)
.||+++|++++||+|++|+++++||++|+|+|+|+.+||+|..... ....++.|+..+|+++|++.+.+|.+
T Consensus 258 ~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g 329 (810)
T PRK09466 258 SELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHD 329 (810)
T ss_pred HHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCC
Confidence 9999999999999999999999999999999999999999975321 12367899999999999999999889
Q ss_pred chhHHHHHHHHHHhCCCcEEEEeC
Q 023782 254 VPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 254 ~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.+|+++++|++|++++|+|+||+|
T Consensus 330 ~~g~~~~if~~l~~~~I~v~~i~~ 353 (810)
T PRK09466 330 FKLAQKELDQLLKRAQLRPLAVGV 353 (810)
T ss_pred cchHHHHHHHHHHHCCCeEEEEEe
Confidence 999999999999999999999975
No 7
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=1.2e-52 Score=405.55 Aligned_cols=243 Identities=21% Similarity=0.295 Sum_probs=213.3
Q ss_pred HHHHHHHHHhhhc------CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023782 16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (277)
Q Consensus 16 i~~~~~~L~~~~~------~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~ 89 (277)
++..++.|+++++ ++++++.+|+++|+||+||+++|+.+|+++|++|.++|+..+.. +. ++ .+.
T Consensus 113 ~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~-~~--------~~-~~~ 182 (475)
T PRK09181 113 ARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD-DD--------PL-TLD 182 (475)
T ss_pred HHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC-Cc--------cc-chH
Confidence 3566667776654 47899999999999999999999999999999999999866532 11 11 134
Q ss_pred HHHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCC--CCCeEE
Q 023782 90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~--~~a~~i 165 (277)
+++++.+.. ..+.|||++||+ .+.+|+++|||||||||+|+++|++|+|++++|||||+ |||+|||.+ |+|+++
T Consensus 183 ~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i 260 (475)
T PRK09181 183 ERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI 260 (475)
T ss_pred HHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence 667776652 246799999996 57789999999999999999999999999999999996 999999999 699999
Q ss_pred eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEE
Q 023782 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVN 245 (277)
Q Consensus 166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Is 245 (277)
++|||+||.||+++|++|+||+|++||++++||++|+|+++|+.+||+|.+.... ..+.+++|+..+|+++|+
T Consensus 261 ~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~-------~~~~ik~It~~~~~~~i~ 333 (475)
T PRK09181 261 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVS-------EQPRVEIIAGSDKVFALE 333 (475)
T ss_pred CccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCccc-------ccccceeEeccCCEEEEE
Confidence 9999999999999999999999999999999999999999999999999864321 234689999999999999
Q ss_pred EecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 246 vvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
|.|.+|.+.+|+++++|+.|++++|+|+|++|
T Consensus 334 i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~s 365 (475)
T PRK09181 334 VFDQDMVGEDGYDLEILEILTRHKVSYISKAT 365 (475)
T ss_pred EcCCCCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence 99999999999999999999999999999875
No 8
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=2.5e-52 Score=426.43 Aligned_cols=255 Identities=40% Similarity=0.678 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023782 14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~ 88 (277)
+.++..++.|++++++ +++++.+|+++|+||+||+++++.+|+++|++|.++++++++ .+++.++++.++++.+
T Consensus 92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~~~~~~~~~ 170 (819)
T PRK09436 92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELL-LADGHYLESTVDIAES 170 (819)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeE-EecCCCCCceechHhh
Confidence 5677778888887764 678899999999999999999999999999999999999985 4566777778888788
Q ss_pred HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
.+.+++++.. .+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++|||||||||+||+.+|+|++++++
T Consensus 171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i 249 (819)
T PRK09436 171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL 249 (819)
T ss_pred HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence 8888888752 478999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEec
Q 023782 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG 248 (277)
Q Consensus 169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg 248 (277)
+|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|++.... ..+++++|++++|+++|+|+|
T Consensus 250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~-------~~~~Vk~It~~~dvalIsV~G 322 (819)
T PRK09436 250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDE-------DSLPVKGISNLNNMAMFNVSG 322 (819)
T ss_pred cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcc-------cccccceEEEeCCEEEEEEEc
Confidence 9999999999999999999999999999999999999999999999865321 235799999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 249 TGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 249 ~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.+|.+.||+++|+|++|+++||+|+|++|
T Consensus 323 ~gm~~~~G~~arIf~~La~~gI~V~mIsq 351 (819)
T PRK09436 323 PGMKGMVGMASRVFAALSRAGISVVLITQ 351 (819)
T ss_pred CCCCCCcCHHHHHHHHHHHCCCcEEEEEc
Confidence 99999999999999999999999999987
No 9
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=1.4e-50 Score=388.15 Aligned_cols=248 Identities=25% Similarity=0.409 Sum_probs=218.1
Q ss_pred HHHHHHhhh-cCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhh
Q 023782 19 TYNFLSNVD-SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFS 97 (277)
Q Consensus 19 ~~~~L~~~~-~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~ 97 (277)
.++.|++++ .++++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.++++|+++.++++.+.+.+.....
T Consensus 84 ~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~~~~~~~~~ 162 (440)
T PRK05925 84 WWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELAL 162 (440)
T ss_pred HHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCccccccCHHHHHHHHHHhhc
Confidence 344555555 3667888999999999999999999999999999999999998 45667788778887666666655442
Q ss_pred cCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHH
Q 023782 98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177 (277)
Q Consensus 98 ~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~ 177 (277)
..+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++|||||||||+||+.+|+|++|++++|+|+.+|+
T Consensus 163 -~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela 241 (440)
T PRK05925 163 -QEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLA 241 (440)
T ss_pred -cCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHH
Confidence 2568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhH
Q 023782 178 YFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGT 257 (277)
Q Consensus 178 ~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv 257 (277)
++|++++||.++++|+++|||++|.|+++|+.+||+|.+..... ...+.+++|+.++|+++|++.+.. ..+++
T Consensus 242 ~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~-----~~~~~ik~It~~~~~~~i~v~~~~--~~~~~ 314 (440)
T PRK05925 242 SFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEV-----SYEPRIKALSLKQNQALWSVDYNS--LGLVR 314 (440)
T ss_pred hCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccc-----cCCCceEEEEEeCCEEEEEEecCC--cchhH
Confidence 99999999999999999999999999999999999998743110 023469999999999999997643 35788
Q ss_pred HHHHHHHHHhCCCcEEEE
Q 023782 258 ANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 258 ~a~if~~L~~~~I~V~~i 275 (277)
++++|+.|+++||+|+++
T Consensus 315 ~~~if~~l~~~~I~vd~i 332 (440)
T PRK05925 315 LEDVLGILRSLGIVPGLV 332 (440)
T ss_pred HHHHHHHHHHcCCcEEEE
Confidence 999999999999999887
No 10
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=100.00 E-value=1.1e-49 Score=383.52 Aligned_cols=237 Identities=36% Similarity=0.563 Sum_probs=218.1
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023782 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
+++.+|.++|+||+||+.+++++|+++|++++++++.+..+++++++++..+......+.+.++++ .+.|||++||+|
T Consensus 101 ~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g 178 (441)
T TIGR00657 101 KPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQG 178 (441)
T ss_pred CcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEe
Confidence 467889999999999999999999999999999999998888877776544334556788999887 789999999999
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023782 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~ 191 (277)
.+.+|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+.+
T Consensus 179 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~ 258 (441)
T TIGR00657 179 ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEP 258 (441)
T ss_pred eCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCc
Q 023782 192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271 (277)
Q Consensus 192 a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~ 271 (277)
+++++||++|+|+++|+.+||+|.+....+ ..+.+++++.++|+++|+|.|.+|.+ +|+++++|++|+++||+
T Consensus 259 ~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~ 331 (441)
T TIGR00657 259 AMRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGIN 331 (441)
T ss_pred HHHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCe
Confidence 999999999999999999999998754311 23579999999999999999999998 99999999999999999
Q ss_pred EEEEeC
Q 023782 272 VIMISQ 277 (277)
Q Consensus 272 V~~isq 277 (277)
|++++|
T Consensus 332 I~~i~q 337 (441)
T TIGR00657 332 VDLITQ 337 (441)
T ss_pred EEEEEe
Confidence 999986
No 11
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=100.00 E-value=3e-49 Score=376.10 Aligned_cols=236 Identities=38% Similarity=0.584 Sum_probs=217.9
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.++..+|.++++||++|+++++++|+++|+++.++++.+..+++.+++++.++....+.+.++++++ .+.|||++||+
T Consensus 61 ~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~~ 138 (401)
T TIGR00656 61 ITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGFQ 138 (401)
T ss_pred CChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCcc
Confidence 4567789999999999999999999999999999999998777777776555554445588899987 78999999999
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~ 190 (277)
|.+.+|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+|+.+|+++|++++||+|+.
T Consensus 139 ~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~ 218 (401)
T TIGR00656 139 GATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVE 218 (401)
T ss_pred eeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023782 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270 (277)
Q Consensus 191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I 270 (277)
+|++++||++|+|+++|+ +||+|.+... ..+.+++|++++|+++|+|+|.+|.+.+|+++++|++|++++|
T Consensus 219 ~a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I 289 (401)
T TIGR00656 219 PAMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNI 289 (401)
T ss_pred HHHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCC
Confidence 999999999999999998 8999987532 2247999999999999999999999999999999999999999
Q ss_pred cEEEEeC
Q 023782 271 NVIMISQ 277 (277)
Q Consensus 271 ~V~~isq 277 (277)
+++|++|
T Consensus 290 ~i~~i~~ 296 (401)
T TIGR00656 290 NVDLISQ 296 (401)
T ss_pred cEEEEEc
Confidence 9999987
No 12
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=4.3e-48 Score=352.36 Aligned_cols=195 Identities=28% Similarity=0.468 Sum_probs=177.1
Q ss_pred HHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHh
Q 023782 17 RSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96 (277)
Q Consensus 17 ~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l 96 (277)
...++.|.+++. ..+++.+|.++|+||+||+++++.+|++.|+++.+++++++.++++++++++.+.. .+.+.+.+++
T Consensus 94 ~~~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~-~~~~~~~~~~ 171 (288)
T cd04245 94 AEILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP-ESYQKIKKLR 171 (288)
T ss_pred HHHHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccch-hhHHHHHHHH
Confidence 333444444433 35688999999999999999999999999999999999999777778887766654 3667888888
Q ss_pred hcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023782 97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176 (277)
Q Consensus 97 ~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l 176 (277)
+ .+.|||++||+|.+.+|++++||||||||+|+++|.+|+|+++++|||||||||+|||++|+|+.+++|||+||.+|
T Consensus 172 ~--~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~el 249 (288)
T cd04245 172 D--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMREL 249 (288)
T ss_pred h--CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHH
Confidence 7 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 177 SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 177 ~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+++|+++|||+|+.+|++++||++|+|+++|+.+||+|.
T Consensus 250 a~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~ 288 (288)
T cd04245 250 SYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV 288 (288)
T ss_pred HHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence 999999999999999999999999999999999999984
No 13
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=357.53 Aligned_cols=257 Identities=27% Similarity=0.441 Sum_probs=226.3
Q ss_pred cHHHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCch
Q 023782 12 SYEFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFS 86 (277)
Q Consensus 12 ~~~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~ 86 (277)
+...+.++++.|+++++| |.+.+.+|+++|+||.||+++++++|++.|++|..+|..++..++.+.+.+.+.. +
T Consensus 163 d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~-~ 241 (559)
T KOG0456|consen 163 DPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDIL-E 241 (559)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHH-H
Confidence 445567778888998875 8999999999999999999999999999999999999999987765555432221 1
Q ss_pred HHHHHHHHHhh-c--CCCceEEecCccc-cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023782 87 ESEKRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (277)
Q Consensus 87 ~~~~~i~~~l~-~--~~~~VpVv~G~i~-~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a 162 (277)
.+...+.+++. . .++.|||++||.| .-..|-++++||||+|.+|+.+|.+||++++.+|+|||||+|+||+++|.|
T Consensus 242 a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~A 321 (559)
T KOG0456|consen 242 ATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGA 321 (559)
T ss_pred HHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCc
Confidence 22222223332 1 3578999999999 557889999999999999999999999999999999999999999999999
Q ss_pred eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCee
Q 023782 163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA 242 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia 242 (277)
++++.++++||.||+|+|+.++||-++.++++.+||++|.|..+|..+||+|.++.. +.+....+|+.++|+.
T Consensus 322 r~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~-------m~k~~~TsI~lK~nv~ 394 (559)
T KOG0456|consen 322 RLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRD-------MSKAGLTSIVLKRNVT 394 (559)
T ss_pred cccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchh-------hhhccceEEEEeccEE
Confidence 999999999999999999999999999999999999999999999999999998753 2456789999999999
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+|.|.+.+|.+..||++++|..|.+.||.|+.|+
T Consensus 395 mldI~Str~l~q~GFLAkvFti~ek~~isVDvva 428 (559)
T KOG0456|consen 395 MLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA 428 (559)
T ss_pred EEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE
Confidence 9999999999999999999999999999999886
No 14
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=1.1e-47 Score=395.28 Aligned_cols=254 Identities=33% Similarity=0.488 Sum_probs=221.3
Q ss_pred HHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC-------CcC
Q 023782 15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD 82 (277)
Q Consensus 15 ~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~~~ 82 (277)
.+...++.|+++++ ++++++.+|.++|+||+||+.+++.+|+++|+++.++|++++++++++.++ +..
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~ 172 (861)
T PRK08961 93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS 172 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence 45667777877775 467889999999999999999999999999999999999999665542111 112
Q ss_pred CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023782 83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (277)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a 162 (277)
++.......++.++. ..+.|||++||+|.+.+|+++||||||||++|+++|.+|+|+++++|||||||||+||+.+|+|
T Consensus 173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a 251 (861)
T PRK08961 173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA 251 (861)
T ss_pred ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence 222112233444443 2336999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCee
Q 023782 163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA 242 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia 242 (277)
+++++++|+|+.+|++.|++++||+|+++|+++|||++|+|+++|+.+||+|.++.. ..+.+++|+.++|++
T Consensus 252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~--------~~~~v~~It~~~~v~ 323 (861)
T PRK08961 252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE--------PVPGVKAISRKNGIV 323 (861)
T ss_pred eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCC--------CCCcceeEEEECCEE
Confidence 999999999999999999999999999999999999999999999999999986531 235799999999999
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|+|.+.+|.+.+|+++++|+.|++++|+|+||+|
T Consensus 324 lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~s 358 (861)
T PRK08961 324 LVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISS 358 (861)
T ss_pred EEEEecCCccccccHHHHHHHHHHHcCCeEEEEEc
Confidence 99999999999999999999999999999999985
No 15
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=2.1e-47 Score=361.89 Aligned_cols=227 Identities=26% Similarity=0.368 Sum_probs=204.6
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.+++.+|.++|+||++|+.+++.+|++.|+++.+++++++.+++++.++..++.. ...+.+.++++ .+.|||++||+
T Consensus 61 ~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~-~~~~~i~~ll~--~~~vpVv~Gf~ 137 (392)
T PRK08841 61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKH-IDTSTITELLE--QDQIVIVAGFQ 137 (392)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceech-hhHHHHHHHHh--CCCEEEEeCCc
Confidence 3566789999999999999999999999999999999998777776665444432 23578888887 78899999999
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~ 190 (277)
|.+++|+++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++|+|+||.+|+++|++++||+|++
T Consensus 138 g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~ 217 (392)
T PRK08841 138 GRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQ 217 (392)
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023782 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270 (277)
Q Consensus 191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I 270 (277)
+|+++|||++|+|++++ .+||+|.... ..+.+++|+.++|+++|++.+. .++++|+.|++++|
T Consensus 218 ~a~~~~Ipi~i~n~~~~-~~GT~I~~~~---------~~~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i 280 (392)
T PRK08841 218 HAWKHSVPLRVLSSFEV-GEGTLIKGEA---------GTQAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGI 280 (392)
T ss_pred HHHHCCCeEEEEecCCC-CCCeEEEecc---------CCCcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCC
Confidence 99999999999999986 5799996532 2357999999999999999763 46899999999999
Q ss_pred cEEEEeC
Q 023782 271 NVIMISQ 277 (277)
Q Consensus 271 ~V~~isq 277 (277)
++++++|
T Consensus 281 ~v~~i~~ 287 (392)
T PRK08841 281 EVWNVIE 287 (392)
T ss_pred CEEEEEe
Confidence 9999875
No 16
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=2.5e-47 Score=347.94 Aligned_cols=200 Identities=31% Similarity=0.574 Sum_probs=184.1
Q ss_pred HHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023782 15 FIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (277)
Q Consensus 15 ~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~ 89 (277)
.+...+++|++++++ +++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.+++++++++++.+.+.
T Consensus 87 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~~ 165 (292)
T cd04258 87 KLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDLNALA 165 (292)
T ss_pred HHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCccccccHHHHH
Confidence 466778888888864 67889999999999999999999999999999999999999 456677888888887777
Q ss_pred HHHHHHhhc-CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 90 KRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 90 ~~i~~~l~~-~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
+.+.+.+.. ..+.|||++||+|.+.+|+++||||||||++|+++|.+|+|+++++||||||||++||+++|+|++++++
T Consensus 166 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~i 245 (292)
T cd04258 166 ELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEI 245 (292)
T ss_pred HHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEecee
Confidence 777776643 2568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+|+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|+
T Consensus 246 sy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~ 292 (292)
T cd04258 246 SFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT 292 (292)
T ss_pred CHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999984
No 17
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=2.9e-47 Score=348.32 Aligned_cols=200 Identities=49% Similarity=0.798 Sum_probs=184.1
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023782 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~ 88 (277)
+.|...++.|+++++ ++++++.+|.++|+||+||+++++.+|+++|+++.+++++++ +.+++.++.+.++.+.+
T Consensus 90 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~ 168 (294)
T cd04257 90 SALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIELS 168 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecCCCCceEechHhh
Confidence 446667777877776 467899999999999999999999999999999999999997 45666777777887777
Q ss_pred HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
.+.+++++... +.|||++||+|.+.+|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++++++
T Consensus 169 ~~~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i 247 (294)
T cd04257 169 KERIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL 247 (294)
T ss_pred HHHHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence 88999888732 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+|+|+.+++++|++++||+|+.+++++|||++|+|+++|+.+||+|+
T Consensus 248 s~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~ 294 (294)
T cd04257 248 SYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS 294 (294)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999984
No 18
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=4.8e-47 Score=346.75 Aligned_cols=200 Identities=43% Similarity=0.736 Sum_probs=184.0
Q ss_pred HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH
Q 023782 14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~ 88 (277)
+.+...++.|++++++ +++++.+|.++|+||+||+++++.+|+++|+++.++++++++ .+++.++.+.+++..+
T Consensus 89 ~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~~~~~~~~s 167 (293)
T cd04243 89 AALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELL-LTDDGFLNAVVDLKLS 167 (293)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeE-EecCCCCcchhhhHHH
Confidence 4566778888888764 578999999999999999999999999999999999999884 4556677777777777
Q ss_pred HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
.+.++.++.. .+.|||++||+|.+.+|+++|+||||||++|+++|.+++|+++++||||||||++||+.+|+|++++++
T Consensus 168 ~~~~~~~~~~-~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~l 246 (293)
T cd04243 168 KERLAQLLAE-HGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKEL 246 (293)
T ss_pred HHHHHHHHhc-CCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence 7889988872 178999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+|+|+.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|+
T Consensus 247 s~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~ 293 (293)
T cd04243 247 SYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS 293 (293)
T ss_pred CHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999984
No 19
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=2.7e-46 Score=356.23 Aligned_cols=240 Identities=28% Similarity=0.454 Sum_probs=210.5
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.+++..+.++++||.+|+++++++|+++|+++.++++.+..+++.+.++..++.. ...+.++++++ .+.|||++||+
T Consensus 66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~-~~~~~l~~~l~--~~~vpVi~G~~ 142 (403)
T PRK08210 66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIE-VNPDRILEALE--EGDVVVVAGFQ 142 (403)
T ss_pred CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeeh-hhHHHHHHHHh--cCCEEEeeCee
Confidence 4567789899999999999999999999999999999988677766665433322 23478888887 78999999999
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~ 190 (277)
+.+++|+++|+||||||++|+++|.+|+|++++|||||||||++||+.+|+++++++|+|+|+.+|+++|++++||+|++
T Consensus 143 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~ 222 (403)
T PRK08210 143 GVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVE 222 (403)
T ss_pred ecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCC
Q 023782 191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270 (277)
Q Consensus 191 ~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I 270 (277)
+|++++||++|+|++++ .+||+|.+...... ..+...+.+++|+..+|+++|+|.+.++ .+|+++++|+.|+++||
T Consensus 223 ~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~-~~~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I 298 (403)
T PRK08210 223 IAMQANIPLRIRSTYSD-SPGTLITSLGDAKG-GIDVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGI 298 (403)
T ss_pred HHHHCCCeEEEEecCCC-cCCcEEEecCcccc-ccccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCC
Confidence 99999999999999985 46999987532100 0001235799999999999999987665 39999999999999999
Q ss_pred cEEEEeC
Q 023782 271 NVIMISQ 277 (277)
Q Consensus 271 ~V~~isq 277 (277)
+|++++|
T Consensus 299 ~i~~i~~ 305 (403)
T PRK08210 299 SVDFINI 305 (403)
T ss_pred eEEEEEe
Confidence 9999987
No 20
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=7.8e-47 Score=346.32 Aligned_cols=202 Identities=30% Similarity=0.515 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHhhhc-----CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC-chH
Q 023782 14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSE 87 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~-----~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~-~~~ 87 (277)
+.++..++.|++++. ++++++.+|.++|+||+||+++++.+|++.|+++.++++++++. ++......... ...
T Consensus 98 ~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~ 176 (306)
T cd04247 98 EEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDE 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHH
Confidence 345667777777775 46789999999999999999999999999999999999999853 43221011111 122
Q ss_pred HHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEee
Q 023782 88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167 (277)
Q Consensus 88 ~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~ 167 (277)
..+.+.+.+....+.|||++||+|.+.+|+++||||||||++|+++|..|+|+++++|||||||||+||+.+|+|++|++
T Consensus 177 ~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~ 256 (306)
T cd04247 177 LAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPS 256 (306)
T ss_pred HHHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecc
Confidence 33334344432346799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeC
Q 023782 168 LSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216 (277)
Q Consensus 168 is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~ 216 (277)
|+|+||.+|+++|++++||+|+.||++++||++|+|+++|+.+||+|.+
T Consensus 257 is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~ 305 (306)
T cd04247 257 ITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP 305 (306)
T ss_pred cCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence 9999999999999999999999999999999999999999999999976
No 21
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=1.8e-46 Score=343.97 Aligned_cols=200 Identities=41% Similarity=0.636 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC---c
Q 023782 14 EFIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F 85 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~ 85 (277)
+.|+..+++|++++++ +++++.+|.++|+||+||+++++.+|+++|++|.+++++++.+++++.+++..++ .
T Consensus 91 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~ 170 (298)
T cd04244 91 SIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATY 170 (298)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHH
Confidence 5577788888888764 6788899999999999999999999999999999999999977777766654332 2
Q ss_pred hHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 86 ~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
......+..+++ .+.|||++||+|.+.+|+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+++++
T Consensus 171 ~~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i 248 (298)
T cd04244 171 ERVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTI 248 (298)
T ss_pred HHHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence 223334445555 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
++++|+||.+|+++|++++||+|+.+|++++||++|+|+++|+.+||+|+
T Consensus 249 ~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~ 298 (298)
T cd04244 249 PRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298 (298)
T ss_pred CccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence 99999999999999999999999999999999999999999999999984
No 22
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=2e-45 Score=350.13 Aligned_cols=235 Identities=31% Similarity=0.495 Sum_probs=212.1
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023782 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
++..++.++++||.+|+++++++|+++|+++.++++.++.++++.+|+..++. ....+.++++++ .+.|||++||+|
T Consensus 62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~--~~~ipVi~g~~~ 138 (404)
T PRK06635 62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARIT-DIDPSRIREALD--EGDVVVVAGFQG 138 (404)
T ss_pred CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEee-ecCHHHHHHHHh--CCCEEEecCccE
Confidence 56778999999999999999999999999999999999977776666543332 123578888887 789999999999
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023782 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~ 191 (277)
.+++|+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|+.+
T Consensus 139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~ 218 (404)
T PRK06635 139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY 218 (404)
T ss_pred eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCc
Q 023782 192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271 (277)
Q Consensus 192 a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~ 271 (277)
++++++|++|.|++++ .+||+|...... ....+.+++++..+++++|+++| |.+.||+++++|++|+++||+
T Consensus 219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~-----~~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~ 290 (404)
T PRK06635 219 AKKYNVPLRVRSSFSD-NPGTLITGEEEE-----IMEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN 290 (404)
T ss_pred HHHcCceEEEEcCCCC-CCCCEEeeCCcc-----ccccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence 9999999999999987 689999875420 01235799999999999999998 889999999999999999999
Q ss_pred EEEEeC
Q 023782 272 VIMISQ 277 (277)
Q Consensus 272 V~~isq 277 (277)
|++++|
T Consensus 291 i~~is~ 296 (404)
T PRK06635 291 VDMIVQ 296 (404)
T ss_pred EEEEEe
Confidence 999987
No 23
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=5.5e-46 Score=339.92 Aligned_cols=199 Identities=34% Similarity=0.543 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhhhcC-----CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC-------cC
Q 023782 15 FIRSTYNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VD 82 (277)
Q Consensus 15 ~i~~~~~~L~~~~~~-----~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-------~~ 82 (277)
.+...++.|++++++ +++++.+|.++|+||+||+++++.+|++.|+++.+++++++++++ +.++. +.
T Consensus 85 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~-~~~~~~~~~~~~a~ 163 (295)
T cd04259 85 LLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTAT-PTLGGETMNYLSAR 163 (295)
T ss_pred HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeec-ccccccccccccce
Confidence 466677778777754 688999999999999999999999999999999999999996544 44543 33
Q ss_pred CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023782 83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (277)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a 162 (277)
++.+.+.+++.+.+.. .+.|||++||+|.+.+|+++||||||||++|+++|.+++|+++++||||||||++||+.+|+|
T Consensus 164 v~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a 242 (295)
T cd04259 164 CESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHA 242 (295)
T ss_pred ehhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCC
Confidence 3334566788888762 257999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+++++++|+|+.+|+++|++++||+|+++|++++||++|+|+++|+.+||+|+
T Consensus 243 ~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~ 295 (295)
T cd04259 243 RLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT 295 (295)
T ss_pred eEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence 99999999999999999999999999999999999999999999999999984
No 24
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=1.8e-44 Score=334.91 Aligned_cols=204 Identities=30% Similarity=0.432 Sum_probs=182.8
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH---HHHHHHhhcCCCceEEec
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIAT 107 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~i~~~l~~~~~~VpVv~ 107 (277)
++++.+|+++|+||++|+.+++.+|+++|+++.+++++++ +.+++.++++.++++.+. +.+.++++ .+.|||++
T Consensus 97 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~ 173 (341)
T PRK08373 97 PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVP 173 (341)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEe
Confidence 4578899999999999999999999999999999999998 456677777766654433 55666666 78999999
Q ss_pred CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023782 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
||++ +.+|.++|+||||||++|+++|.+|+|++++|||||||||++||+.+|+|++++++||+||.+|+++|++++||+
T Consensus 174 Gf~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ 252 (341)
T PRK08373 174 GFIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWK 252 (341)
T ss_pred CCcc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHH
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecC
Q 023782 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGT 249 (277)
Q Consensus 188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~ 249 (277)
|++++++ +||++|+|+++| .+||+|.+... ..+.+..+ ..+|.|.|+++|.
T Consensus 253 ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~--------~~~~~~~~-~~~~~~~i~~~~~ 303 (341)
T PRK08373 253 AIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS--------GMPILVHK-VGEEHAEILVVGV 303 (341)
T ss_pred HHHHHHc-CCcEEEecCCCC-CCCcEEecCCC--------CCceEEEE-ecCCEEEEEEecc
Confidence 9999999 999999999998 48999987543 22567777 8999999999984
No 25
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=1.1e-43 Score=352.85 Aligned_cols=242 Identities=28% Similarity=0.433 Sum_probs=209.8
Q ss_pred CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023782 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (277)
Q Consensus 30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~ 109 (277)
..+....+.++++||.+|+.+++.+|+++|+++.++++.++.+++++.++..++.. ...+.++++++ .+.|||++||
T Consensus 60 ~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~-~~~~~l~~~l~--~g~vpVv~g~ 136 (587)
T PRK07431 60 NPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILE-IKTDRIQRHLD--AGKVVVVAGF 136 (587)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeee-ccHHHHHHHHh--CCCeEEecCC
Confidence 44566889999999999999999999999999999999998777766655433321 12368888887 7899999999
Q ss_pred cccCCC--CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023782 110 IASTPD--NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 110 i~~~~~--G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
+|.+.+ |+++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++|++++|+|+.+|+++|+++|||+
T Consensus 137 ~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~ 216 (587)
T PRK07431 137 QGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPR 216 (587)
T ss_pred cCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHH
Confidence 887644 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC-CcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHH
Q 023782 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266 (277)
Q Consensus 188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~-~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~ 266 (277)
|+.+++++|||++|+|++. +.+||+|.+..... ...+.....+++++++.+|++++++. +|.+.+|+++++|+.|+
T Consensus 217 a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~--~~~~~~g~~a~if~~l~ 293 (587)
T PRK07431 217 AVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELA 293 (587)
T ss_pred HHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEe--cCCCcccHHHHHHHHHH
Confidence 9999999999999999994 56899998654321 00011113468999999999999996 68899999999999999
Q ss_pred hCCCcEEEEeC
Q 023782 267 DVGANVIMISQ 277 (277)
Q Consensus 267 ~~~I~V~~isq 277 (277)
++||+|+||+|
T Consensus 294 ~~~I~v~~i~q 304 (587)
T PRK07431 294 AQGVNVDLIIQ 304 (587)
T ss_pred HcCCcEEEEEe
Confidence 99999999987
No 26
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=8.3e-44 Score=323.38 Aligned_cols=188 Identities=21% Similarity=0.337 Sum_probs=163.1
Q ss_pred HHHHHHHHHhhhc------CCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHH
Q 023782 16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE 89 (277)
Q Consensus 16 i~~~~~~L~~~~~------~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~ 89 (277)
.+.|+..|.++|. ++++++.+|.++|+||++|+.+++.+|++.|++|.++|...+.. . ... . + .
T Consensus 107 ~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~-~-~~~---t-~----~ 176 (304)
T cd04248 107 ARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRD-S-GDM---T-L----D 176 (304)
T ss_pred HHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccc-c-CCC---C-c----H
Confidence 4566677777774 37899999999999999999999999999999999999876632 1 111 1 1 2
Q ss_pred HHHHHHhhc--CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCC--CCCeEE
Q 023782 90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~--~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~--~~a~~i 165 (277)
+++.+.+.. ..+.|||++|| +.+.+|+++|||||||||+|+++|.+|+|++++|||||+ |||+|||.+ ++|++|
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i 254 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPI 254 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCc-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEe
Confidence 444444431 24579999999 567899999999999999999999999999999999995 999999999 689999
Q ss_pred eeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+++||+||.||+++|++++||+|++++++++||++|+|+|+|+.+||+|+
T Consensus 255 ~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt 304 (304)
T cd04248 255 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT 304 (304)
T ss_pred CccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999994
No 27
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=100.00 E-value=1.9e-41 Score=313.08 Aligned_cols=195 Identities=27% Similarity=0.427 Sum_probs=172.3
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHH---HHHHhhcCCCceEEec
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR---LEKWFSQSPSNTIIAT 107 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~---i~~~l~~~~~~VpVv~ 107 (277)
+++..+|+++|+||+||+++++. |+++.++++++++ .+++.++++.++++.+... +.++++ .+.|||++
T Consensus 92 ~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i-~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~ 163 (327)
T TIGR02078 92 PKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIF-FAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIP 163 (327)
T ss_pred CChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHh-ccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEe
Confidence 35678999999999999999987 8999999999984 5667788777776555444 444554 78999999
Q ss_pred CccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHH
Q 023782 108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187 (277)
Q Consensus 108 G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~ 187 (277)
||++ +.+|.++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus 164 Gf~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~ 242 (327)
T TIGR02078 164 GFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWK 242 (327)
T ss_pred CCcc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHH
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecC-eeEEEE
Q 023782 188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNV 246 (277)
Q Consensus 188 a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~n-ia~Isv 246 (277)
|+++++++|||++|+|+++|+ +||+|+.... ....++++++ ++.|++
T Consensus 243 a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~-----------~~~~i~~~~~~i~~v~~ 290 (327)
T TIGR02078 243 AADLAKEYKIPVLFGRTRDWR-MGTLISNRSS-----------GMPLMVYKDGELLVVNV 290 (327)
T ss_pred HHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC-----------CCcEEEEccCcEEEEEE
Confidence 999999999999999999997 7999987542 1333788888 888887
No 28
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=1.8e-38 Score=282.82 Aligned_cols=181 Identities=33% Similarity=0.479 Sum_probs=165.5
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.+.+..+.++++||++++.++++.|+++|++++++++.++.+++.++++..++.. ...+.++++++ .+.|||++||+
T Consensus 59 ~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~-~~~~~l~~ll~--~~~ipVi~G~~ 135 (239)
T cd04261 59 PPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID-IDPDRIRELLE--EGDVVIVAGFQ 135 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceech-hhHHHHHHHHH--cCCeEEEcCcc
Confidence 3567788899999999999999999999999999999998766666664433322 23478888888 78999999999
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~ 190 (277)
+.+++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|++
T Consensus 136 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~ 215 (239)
T cd04261 136 GINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVE 215 (239)
T ss_pred ccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 191 PVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 191 ~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
++.++|||++|.|+++|+ +||+|+
T Consensus 216 ~~~~~~i~i~I~n~~~~~-~gt~i~ 239 (239)
T cd04261 216 LAKKYGVPLRVLSSFSEE-PGTLIT 239 (239)
T ss_pred HHHHcCCeEEEecCCCCC-CCcEeC
Confidence 999999999999999999 999984
No 29
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=3e-38 Score=282.30 Aligned_cols=182 Identities=34% Similarity=0.508 Sum_probs=165.5
Q ss_pred CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023782 30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (277)
Q Consensus 30 ~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~ 109 (277)
..++...+.++++||.+++.+++++|+++|+++..+++.+..+++.+.++..++.. ...+.++++++ .+.|||++||
T Consensus 63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~-~~~~~l~~ll~--~g~VPVv~g~ 139 (244)
T cd04260 63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIK-VNPKKILSALK--EGDVVVVAGF 139 (244)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeec-cCHHHHHHHHh--CCCEEEecCC
Confidence 35667789999999999999999999999999999999998777766665433221 12367888887 7899999999
Q ss_pred cccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023782 110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (277)
Q Consensus 110 i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~ 189 (277)
++.|++|++++++|||+|++|+++|.+|+|+++++||||||||++||+.++++++|++|+|+|+.+|++.|++++||+|+
T Consensus 140 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~ 219 (244)
T cd04260 140 QGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAV 219 (244)
T ss_pred cccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 190 IPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 190 ~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
++++++++|++|.|+++|+ +||+|+
T Consensus 220 ~~~~~~~i~v~I~~~~~~~-~gt~i~ 244 (244)
T cd04260 220 EIAMQANIPIRIRSTMSEN-PGTLIT 244 (244)
T ss_pred HHHHHcCCeEEEecCCCCC-CCCEeC
Confidence 9999999999999999998 999984
No 30
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=1.3e-38 Score=281.71 Aligned_cols=200 Identities=39% Similarity=0.639 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhhhc---------C--CCChhHHH--HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC
Q 023782 13 YEFIRSTYNFLSNVDS---------G--HATESFTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN 79 (277)
Q Consensus 13 ~~~i~~~~~~L~~~~~---------~--~~~~~~~~--~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g 79 (277)
.+.++...+.+.++.. | ..+..... .++|+||.+|+++++++|+++|+++.++++.++.+++++. +
T Consensus 14 ~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~ 92 (227)
T cd04234 14 AERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-H 92 (227)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-c
Confidence 3456666666655411 1 23444333 6888999999999999999999999999999997766543 2
Q ss_pred CcCCCchHHHHHHHHHhhcCC-CceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCC
Q 023782 80 QVDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158 (277)
Q Consensus 80 ~~~~~~~~~~~~i~~~l~~~~-~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~ 158 (277)
......+...+.++++++ . +.|||++||++.+++|++++++|||+|++|+++|.+|+|+++++||||||||++||+.
T Consensus 93 ~~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 93 GAARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred chhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 223334556788999888 7 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEe
Q 023782 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 159 ~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
+|+++++++++|+|+.+|+..|+++|||+|+++|.+++||++|+|+++|+.+||+|+
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~ 227 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999984
No 31
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=7e-38 Score=278.91 Aligned_cols=180 Identities=33% Similarity=0.522 Sum_probs=164.7
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023782 32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
+....+.+++.||.+|+.++++.|+++|++++++++.+..+++...+++.++. ..+.+.++++++ .+.|||++||++
T Consensus 60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~-~~~~~~l~~ll~--~g~ipVi~g~~~ 136 (239)
T cd04246 60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARII-DIDPKRILEALE--EGDVVVVAGFQG 136 (239)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeec-hhhHHHHHHHHh--cCCEEEEcCccc
Confidence 56678899999999999999999999999999999999766665556443333 234578888888 789999999999
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHH
Q 023782 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP 191 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~ 191 (277)
.+++|.+++++|||+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus 137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~ 216 (239)
T cd04246 137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL 216 (239)
T ss_pred cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcEEEEeccCCCCCeeEEe
Q 023782 192 VMRYDIPIVIRNIFNLSVPGIMIC 215 (277)
Q Consensus 192 a~~~~i~v~I~n~~~~~~~GT~I~ 215 (277)
++++|||++|+|+++|+ +||+|+
T Consensus 217 a~~~gi~i~i~~~~~~~-~gt~i~ 239 (239)
T cd04246 217 AKKYNVPLRVRSSFSEN-PGTLIT 239 (239)
T ss_pred HHHCCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999 999984
No 32
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.97 E-value=1.8e-30 Score=231.19 Aligned_cols=180 Identities=37% Similarity=0.499 Sum_probs=156.9
Q ss_pred CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 31 ~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
.+....+.+++.|+.+++.++++.|+++|+++.++++.++...+. .++..........+.++++++ .+.|||++||.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~ 137 (248)
T cd02115 61 ITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGKITKVSTDRLKSLLE--NGILPILSGFG 137 (248)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCcccceeeCHHHHHHHHh--CCcEEEecCeE
Confidence 346677889999999999999999999999999999998876553 333322223334588899998 78999999998
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII 190 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~ 190 (277)
+.+.+ +..+++|+++|++|+.+|.+|+|++++|||||||||++||++++++++|++|+|+|+.+++..|..++||+++.
T Consensus 138 ~~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~ 216 (248)
T cd02115 138 GTDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAAD 216 (248)
T ss_pred eccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHH
Confidence 87765 67788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcEEEEeccC--------CCCCeeEE
Q 023782 191 PVMRYDIPIVIRNIFN--------LSVPGIMI 214 (277)
Q Consensus 191 ~a~~~~i~v~I~n~~~--------~~~~GT~I 214 (277)
++.+++++++|.|+++ ++.+||+|
T Consensus 217 ~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I 248 (248)
T cd02115 217 PAARAGIPVRIANTENPGALALFTPDGGGTLI 248 (248)
T ss_pred HHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence 9999999999999987 45667764
No 33
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.95 E-value=7.8e-27 Score=206.99 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=147.1
Q ss_pred ccHHHHHHHHHHHHhhhc---------C-----------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccc
Q 023782 11 LSYEFIRSTYNFLSNVDS---------G-----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV 70 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~---------~-----------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~ 70 (277)
++.+.|+...++|+++.+ | ..++...|.+.++||+||+.+++.+|.+.|++++++++.
T Consensus 20 ~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~-- 97 (231)
T PRK14558 20 FDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI-- 97 (231)
T ss_pred cCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--
Confidence 666777777777765431 1 234456788888899999999999999999999999862
Q ss_pred eeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecccc
Q 023782 71 LIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150 (277)
Q Consensus 71 ~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~G 150 (277)
. .... + .+.+.+.+..+++ .+.|||++|+.+ ... +.+|++|+++|..++|+++++||||||
T Consensus 98 ~--~~~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~---~~~------~~~D~~a~~lA~~l~a~~l~~~tdVdG 158 (231)
T PRK14558 98 V--NLPS-----V-EPINYDDIELYFR--AGYIVIFAGGTS---NPF------FTTDTAAALRAVEMKADILIKATKVDG 158 (231)
T ss_pred c--ccch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC---CCC------CCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence 1 1111 1 1234578888887 789999999853 111 235999999999999999999999999
Q ss_pred ccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC---------CCeeEEeC
Q 023782 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR 216 (277)
Q Consensus 151 vyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~ 216 (277)
||++||+++|+|+++++++|+|+.++ |.+++||+++++|.++|+|++|+|+++|+ ..||+|.+
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 159 IYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred eEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999886 78999999999999999999999998663 46888854
No 34
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.94 E-value=4.2e-25 Score=195.59 Aligned_cols=158 Identities=23% Similarity=0.282 Sum_probs=133.8
Q ss_pred hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023782 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
+...+.+.+.|+.+++.+++..|.++|+++..+++.++...+. ..+ .+.+..+++ .+.|||++||.+.
T Consensus 62 ~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~------~~~----~~~l~~~l~--~g~ipVi~g~~g~ 129 (229)
T cd04239 62 RATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE------PYI----RRRAIRHLE--KGRIVIFGGGTGN 129 (229)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc------ccc----HHHHHHHHh--CCCEEEEeCccCC
Confidence 4456778889999999999999999999999999887643221 112 366888887 8899999999642
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHH
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV 192 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a 192 (277)
. . +.+|++|+++|.+|+|++++|||||||||++||+.+|+|++|++++++|+.+++. +++||.+++++
T Consensus 130 ~-----~----~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~ 197 (229)
T cd04239 130 P-----G----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLC 197 (229)
T ss_pred C-----C----CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHH
Confidence 1 1 2479999999999999999999999999999999999999999999999998853 88999999999
Q ss_pred HhCCCcEEEEeccCCC---------CCeeEE
Q 023782 193 MRYDIPIVIRNIFNLS---------VPGIMI 214 (277)
Q Consensus 193 ~~~~i~v~I~n~~~~~---------~~GT~I 214 (277)
.++++|++|.|+++|+ ..||+|
T Consensus 198 ~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 228 (229)
T cd04239 198 RRNKIPIIVFNGLKPGNLLRALKGEHVGTLI 228 (229)
T ss_pred HHCCCeEEEECCCChhHHHHHHcCCCCCeEe
Confidence 9999999999998763 357776
No 35
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.94 E-value=2.5e-25 Score=199.71 Aligned_cols=166 Identities=17% Similarity=0.286 Sum_probs=135.1
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023782 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (277)
Q Consensus 34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~ 113 (277)
...+.++|+||..+.++++..|+++|+++. +++ .+++.|..... +....+.++.+++ .+.|||+++
T Consensus 65 ~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~l-~t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~----- 130 (251)
T cd04242 65 PEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QIL-LTRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE----- 130 (251)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EEE-EehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence 345789999999999999999999999963 333 34444432211 1222466778887 789999964
Q ss_pred CCCCcee--ccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC--HHHHHHHH-----hhcCCcc
Q 023782 114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVL 184 (277)
Q Consensus 114 ~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is--~~e~~~l~-----~~g~~v~ 184 (277)
++.+++ ++|+++|++|+++|.+|+|++++|||||||||++||+.+|++++|++++ ++|+.+++ .++.++|
T Consensus 131 -~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm 209 (251)
T cd04242 131 -NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGM 209 (251)
T ss_pred -CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCc
Confidence 233444 7899999999999999999999999999999999999999999999999 99999985 5678999
Q ss_pred hH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023782 185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI 214 (277)
Q Consensus 185 ~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I 214 (277)
+| +++..+.++|++++|.|++.|+ ..||+|
T Consensus 210 ~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i 250 (251)
T cd04242 210 RTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF 250 (251)
T ss_pred HHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEe
Confidence 99 6889999999999999987663 468876
No 36
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.93 E-value=6.5e-25 Score=194.49 Aligned_cols=156 Identities=22% Similarity=0.291 Sum_probs=128.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~ 114 (277)
..+.+.+.+++++++++++.|.++|+++..+++..+...+ . . ...+.+.++++ .+.|||++|+.+
T Consensus 66 ~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~-----~---~--~~~~~~~~~l~--~g~vPVv~g~~~--- 130 (231)
T PRK00358 66 TADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVA-----E---P--YIRRRAIRHLE--KGRVVIFAAGTG--- 130 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhccccc-----C---c--ccHHHHHHHHH--CCCEEEEECCCC---
Confidence 3566778899999999999999999999876664432211 1 1 12356778887 889999988632
Q ss_pred CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh
Q 023782 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194 (277)
Q Consensus 115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~ 194 (277)
+. .+.+|++|+++|.+|+|+++++||||||||++||+.+|+|++|++++|+|+.++ |++++|+.++++|.+
T Consensus 131 ~~------~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~ 201 (231)
T PRK00358 131 NP------FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARD 201 (231)
T ss_pred CC------CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHH
Confidence 11 124799999999999999999999999999999999999999999999998776 889999999999999
Q ss_pred CCCcEEEEeccCCC---------CCeeEE
Q 023782 195 YDIPIVIRNIFNLS---------VPGIMI 214 (277)
Q Consensus 195 ~~i~v~I~n~~~~~---------~~GT~I 214 (277)
+++|++|.|+++|+ ..||+|
T Consensus 202 ~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 230 (231)
T PRK00358 202 NKIPIIVFNMNKPGNLKRVVKGEHIGTLV 230 (231)
T ss_pred cCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence 99999999987663 468877
No 37
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.93 E-value=4.4e-26 Score=202.20 Aligned_cols=113 Identities=35% Similarity=0.487 Sum_probs=108.2
Q ss_pred HHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeee
Q 023782 89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL 168 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~i 168 (277)
.+.++++++ .+.|||++||.+.+.+|++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|
T Consensus 124 ~~~i~~~l~--~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l 201 (242)
T PF00696_consen 124 KEAIRELLE--QGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPEL 201 (242)
T ss_dssp HHHHHHHHH--TTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEE
T ss_pred HHHHHHHHH--CCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEe
Confidence 488899998 789999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH------hhcCCcchHHHHHHHHhCCCcEEEEe
Q 023782 169 SYQEAWEMS------YFGANVLHPRTIIPVMRYDIPIVIRN 203 (277)
Q Consensus 169 s~~e~~~l~------~~g~~v~~p~a~~~a~~~~i~v~I~n 203 (277)
+++|+.+++ ..|+++.||.|++++.++++|++|+|
T Consensus 202 ~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 202 SYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp EHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred eHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999999999 78889999999999999999999986
No 38
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.92 E-value=1.3e-24 Score=194.54 Aligned_cols=163 Identities=18% Similarity=0.252 Sum_probs=129.2
Q ss_pred ChhHHHHHhhhcHHHHHHHHHHHHHHC-CCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 32 TESFTDFVVGHGELWSAQMLAAVVRKN-GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 32 ~~~~~~~v~s~Ge~~s~~ll~~~L~~~-Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
++...|.+.++||+||++++..+|++. +..+..+ ++..++... .+....++.+.++ .|.|||++||.
T Consensus 67 ~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~--------t~~~~~~~~--~~~~~~~~~~~l~--~g~VvV~~G~~ 134 (247)
T PRK14557 67 DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVM--------TSIPFNAVA--EPYIRLRAVHHLD--NGYIVIFGGGN 134 (247)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEE--------ecccccccc--chhhHHHHHHHHh--CCCEEEEECCc
Confidence 445678999999999999999999984 5554333 333222211 1112245666676 78899999986
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEee-ccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHH
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI 189 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t-DV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~ 189 (277)
+. +.++ +|++|+++|..++|+.+++|| |||||||+||+++|+|++|++++|+|+. ..+.++|++.|+
T Consensus 135 g~---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~ 202 (247)
T PRK14557 135 GQ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAAL 202 (247)
T ss_pred CC---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHH
Confidence 63 4444 499999999999999999995 9999999999999999999999999884 456789999999
Q ss_pred HHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023782 190 IPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (277)
Q Consensus 190 ~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~ 218 (277)
++|.++|||++|+|+.+|+ ..||+|.+..
T Consensus 203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 9999999999999998763 5799997653
No 39
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.92 E-value=2.1e-24 Score=195.29 Aligned_cols=169 Identities=17% Similarity=0.225 Sum_probs=132.2
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023782 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (277)
Q Consensus 34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~ 113 (277)
..++.++|+||.++.+++..+|+++|+++ +++ +.+.+.|.+.+. +....+.++++++ .|.|||+.+
T Consensus 75 ~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-llT~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~----- 140 (266)
T PRK12314 75 AEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-LLTRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE----- 140 (266)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EEecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence 45688999999999999999999999975 455 345455543222 2334577888887 889999964
Q ss_pred CCCCceecc----CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHhh-----cCC
Q 023782 114 PDNIPTTLK----RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GAN 182 (277)
Q Consensus 114 ~~G~~~~lg----rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~~-----g~~ 182 (277)
++.+++.+ +|++|++|+++|.+++|++++|||||||||++||+.+|+|++|+++++ .|..+++.. |.+
T Consensus 141 -nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tG 219 (266)
T PRK12314 141 -NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTG 219 (266)
T ss_pred -CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccC
Confidence 23333333 788999999999999999999999999999999999999999999987 566565432 333
Q ss_pred cc--hHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023782 183 VL--HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP 217 (277)
Q Consensus 183 v~--~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~ 217 (277)
+| +++++..|.++|++++|.|+++| +..||+|.+.
T Consensus 220 GM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 220 GMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred chHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence 44 55789999999999999998766 3579999653
No 40
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.92 E-value=3.5e-24 Score=190.01 Aligned_cols=156 Identities=24% Similarity=0.291 Sum_probs=131.3
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~ 115 (277)
.|.+.+.|+++|+.++++.|.+.|+++.++++.+...+.. ..+ .+.++++++ .+.|||++|+.+
T Consensus 67 ~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~~------~~~----~~~l~~~l~--~g~ipV~~g~~G---- 130 (231)
T cd04254 67 ADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAE------PYI----RRRAIRHLE--KGRVVIFAGGTG---- 130 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhhc------ccC----HHHHHHHHH--CCCEEEEECCcC----
Confidence 4567778999999999999999999999999987622111 123 378888887 789999998754
Q ss_pred CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhC
Q 023782 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY 195 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~ 195 (277)
...+ .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+. |.+++|+.++++|.++
T Consensus 131 -~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~~~~d~~a~~~a~~~ 202 (231)
T cd04254 131 -NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDN 202 (231)
T ss_pred -CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---chhhhHHHHHHHHHHC
Confidence 2111 2599999999999999999999999999999999999999999999998763 7889999999999999
Q ss_pred CCcEEEEeccCCC---------CCeeEEe
Q 023782 196 DIPIVIRNIFNLS---------VPGIMIC 215 (277)
Q Consensus 196 ~i~v~I~n~~~~~---------~~GT~I~ 215 (277)
|++++|+|+++|+ ..||+|+
T Consensus 203 gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 203 NLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred CCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 9999999987663 4688873
No 41
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=1.9e-23 Score=182.33 Aligned_cols=181 Identities=23% Similarity=0.270 Sum_probs=150.2
Q ss_pred ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023782 11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~~----------------------~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
.+.++++..-++|+++... -.++...|++-....+++|.++.+.|.+.|++++.+++.
T Consensus 25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai 104 (238)
T COG0528 25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI 104 (238)
T ss_pred CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence 6788888888888777631 255667888888899999999999999999999999887
Q ss_pred cceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec-
Q 023782 69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD- 147 (277)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD- 147 (277)
....+ ..+.+.+...++++ ++.|+|..|- +.+.+.+| |++|+++|..++||-++..|+
T Consensus 105 ~~~~~----------~e~~~~~~A~~~l~--~grVvIf~gG---tg~P~fTT------Dt~AALrA~ei~ad~ll~atn~ 163 (238)
T COG0528 105 AMPQV----------AEPYSRREAIRHLE--KGRVVIFGGG---TGNPGFTT------DTAAALRAEEIEADVLLKATNK 163 (238)
T ss_pred cCccc----------cCccCHHHHHHHHH--cCCEEEEeCC---CCCCCCch------HHHHHHHHHHhCCcEEEEeccC
Confidence 66321 12234577888887 8999998872 22333444 999999999999999999995
Q ss_pred cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023782 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
|||||++||+++|+|+.+++|||+|+.++ +.++|||.|+.++++++||++++|.+.+ ++.||.|.
T Consensus 164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~ 237 (238)
T COG0528 164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence 99999999999999999999999999887 5899999999999999999999997765 36778774
No 42
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.91 E-value=3e-23 Score=184.84 Aligned_cols=181 Identities=19% Similarity=0.255 Sum_probs=148.6
Q ss_pred ccHHHHHHHHHHHHhhhc-C------------------C----CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023782 11 LSYEFIRSTYNFLSNVDS-G------------------H----ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT 67 (277)
Q Consensus 11 ~~~~~i~~~~~~L~~~~~-~------------------~----~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~ 67 (277)
++.++++.+-++++++.+ | . .++...|++-..+.+++|.++.+.|.+.|++++.+++
T Consensus 35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa 114 (249)
T PRK14556 35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA 114 (249)
T ss_pred cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence 677778777777777654 1 1 3455789998999999999999999999999999988
Q ss_pred ccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec
Q 023782 68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (277)
Q Consensus 68 ~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD 147 (277)
....- + .++ .+.+.+.++++ +|.|+|+.|+.| ++.++ +|++|+++|..++|+.+++|||
T Consensus 115 ~~~~~-----~--~e~---~~~~~~~~~l~--~g~vvi~~gg~G---~p~~S------tD~lAallA~~l~Ad~Lii~Td 173 (249)
T PRK14556 115 KGVDG-----L--LKV---ASAHEFNQELA--KGRVLIFAGGTG---NPFVT------TDTTASLRAVEIGADALLKATT 173 (249)
T ss_pred cccCc-----C--CCC---CCHHHHHHHHh--CCCEEEEECCCC---CCcCC------cHHHHHHHHHHcCCCEEEEEeC
Confidence 65421 1 111 24577888887 788999888654 34444 3999999999999999999999
Q ss_pred cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCC---------CCCeeEEe
Q 023782 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC 215 (277)
Q Consensus 148 V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~ 215 (277)
||||||+||+++|+|+++++++|+|+.+. +..+|++.+++++.++|||++|+|+++| +..||+|.
T Consensus 174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247 (249)
T ss_pred CCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence 99999999999999999999999998763 5689999999999999999999998766 35799885
No 43
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.91 E-value=1.2e-23 Score=186.78 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=131.4
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~ 115 (277)
.|.+.+.++.+++++++++|.+.|+++.++++.++.. .... ...+.++++++ .+.|||+.|+.+.
T Consensus 68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~-~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~--- 132 (233)
T TIGR02075 68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQ-ICES---------YIRRKAIKHLE--KGKVVIFSGGTGN--- 132 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCC-Cccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence 5778888999999999999999999999999887641 1111 12377888887 7899999987542
Q ss_pred CCceeccCCCchHHHHHHHHHhCcceEEEeec-cccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHh
Q 023782 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD-V~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~ 194 (277)
.. ..+|++|+++|..|+|++++|||| |||||++||+++|+++++++++|+|+.++ |.+++|+.++++|.+
T Consensus 133 ~~------~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~ 203 (233)
T TIGR02075 133 PF------FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD 203 (233)
T ss_pred CC------CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence 11 135999999999999999999999 99999999999999999999999998765 778999999999999
Q ss_pred CCCcEEEEeccCCC---------CCeeEEe
Q 023782 195 YDIPIVIRNIFNLS---------VPGIMIC 215 (277)
Q Consensus 195 ~~i~v~I~n~~~~~---------~~GT~I~ 215 (277)
+|++++|+|+++|+ ..||+|+
T Consensus 204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 204 NNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred CCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999987663 5688773
No 44
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.90 E-value=1.1e-22 Score=191.36 Aligned_cols=195 Identities=17% Similarity=0.248 Sum_probs=149.6
Q ss_pred cccHHHHHHHHHHHHhhhc----------C-------C------CChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEc
Q 023782 10 ELSYEFIRSTYNFLSNVDS----------G-------H------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66 (277)
Q Consensus 10 ~~~~~~i~~~~~~L~~~~~----------~-------~------~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~ 66 (277)
.++.+++....+++.++.+ | . ..-..++.+.+.|+.++...+...|.++|+++..
T Consensus 23 ~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aq-- 100 (368)
T PRK13402 23 GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQ-- 100 (368)
T ss_pred CcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEE--
Confidence 3567777777766665442 1 0 1223467788999999999999999999999843
Q ss_pred cccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCcee--ccCCCchHHHHHHHHHhCcceEEE
Q 023782 67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI 144 (277)
Q Consensus 67 ~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~i 144 (277)
+++ +.+.+.+. -.|...+..+..+++ .+.|||+.. ++.+++ +++|++|++|+++|.+++|+.++|
T Consensus 101 ---vLl-T~~d~~~~-~~y~n~~~~l~~LL~--~g~IPIine------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii 167 (368)
T PRK13402 101 ---LLL-THGDLRDR-ERYINIRNTINVLLE--RGILPIINE------NDAVTTDRLKVGDNDNLSAMVAALADADTLII 167 (368)
T ss_pred ---EEE-ecchhhhH-HHHHHHHHHHHHHHH--CCcEEEEeC------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence 333 33333211 113334577888887 889999963 223343 778999999999999999999999
Q ss_pred eeccccccccCCCCCCCCeEEeeeCH--HHHHHHH-----hhcCCcchH--HHHHHHHhCCCcEEEEeccCC--------
Q 023782 145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLHP--RTIIPVMRYDIPIVIRNIFNL-------- 207 (277)
Q Consensus 145 ~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~-----~~g~~v~~p--~a~~~a~~~~i~v~I~n~~~~-------- 207 (277)
||||||||++||+.+|+|++|+++++ +|+.+++ ..|.++|+| .++..|.++|+|++|.|+..|
T Consensus 168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~ 247 (368)
T PRK13402 168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK 247 (368)
T ss_pred EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence 99999999999999999999999997 7777776 357889999 588999999999999999876
Q ss_pred -CCCeeEEeCCCC
Q 023782 208 -SVPGIMICRPPV 219 (277)
Q Consensus 208 -~~~GT~I~~~~~ 219 (277)
+..||+|.+...
T Consensus 248 g~~~GT~i~~~~~ 260 (368)
T PRK13402 248 GQNPGTYFTPEEK 260 (368)
T ss_pred CCCCceEEecCCC
Confidence 357999987543
No 45
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.88 E-value=2e-21 Score=183.50 Aligned_cols=171 Identities=19% Similarity=0.247 Sum_probs=134.1
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecC-ccccC
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIAST 113 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~ 113 (277)
..+.+.+.||..+++++.+.|+++|+++..+ + ++.+.+.. ...+......+..+++ .+.|||+++ +...
T Consensus 75 ~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi-----l-~t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~nd~v~- 144 (372)
T PRK05429 75 EKQAAAAVGQSRLMQAYEELFARYGITVAQI-----L-LTRDDLED-RERYLNARNTLRTLLE--LGVVPIINENDTVA- 144 (372)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE-----E-eehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcCCCccc-
Confidence 4577889999999999999999999997653 2 23322211 1112223466778887 789999973 2111
Q ss_pred CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcchH
Q 023782 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP 186 (277)
Q Consensus 114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p 186 (277)
...+++|++|++|+++|.+++|+.++|||||||||++||+.+|++++|+++++ +|+.+++. .|.++|+|
T Consensus 145 ----~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~ 220 (372)
T PRK05429 145 ----TDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMAT 220 (372)
T ss_pred ----eecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHH
Confidence 11256789999999999999999999999999999999999999999999998 67888853 56789999
Q ss_pred --HHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCCCC
Q 023782 187 --RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPPV 219 (277)
Q Consensus 187 --~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~~~ 219 (277)
.++..+.++|++++|.|+..| +..||+|.+...
T Consensus 221 Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 264 (372)
T PRK05429 221 KLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEK 264 (372)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCc
Confidence 688999999999999998765 357999987543
No 46
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.88 E-value=1.7e-21 Score=171.73 Aligned_cols=146 Identities=23% Similarity=0.231 Sum_probs=119.1
Q ss_pred hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023782 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
+...|.+...++.++++++...|. .|+++..+ + .+.+.++++ .+.|||++||++
T Consensus 60 ~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~------------------~----~~~~~~~l~--~g~vpv~~G~~~- 113 (221)
T cd04253 60 EAFLDEIGIMATRLNARLLIAALG-DAYPPVPT------------------S----YEEALEAMF--TGKIVVMGGTEP- 113 (221)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCC------------------C----HHHHHHHHH--cCCeEEEECCCC-
Confidence 334566667788888888887776 66654322 1 145667777 789999999964
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-----cC-CcchH
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-----GA-NVLHP 186 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-----g~-~v~~p 186 (277)
+ .+ +|++|+++|..++|+++++||||||||++||+.+|+|++|++++++|+.+++.. |. .++|+
T Consensus 114 ---~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~ 183 (221)
T cd04253 114 ---G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDP 183 (221)
T ss_pred ---C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHH
Confidence 2 22 399999999999999999999999999999999999999999999999999765 43 57899
Q ss_pred HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023782 187 RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI 214 (277)
Q Consensus 187 ~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I 214 (277)
.+++++.+++++++|+|+.+|+ ..||+|
T Consensus 184 ~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I 220 (221)
T cd04253 184 LAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII 220 (221)
T ss_pred HHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence 9999999999999999987663 468876
No 47
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.87 E-value=3e-21 Score=181.75 Aligned_cols=170 Identities=17% Similarity=0.248 Sum_probs=132.9
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEec-CccccC
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIAST 113 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~-G~i~~~ 113 (277)
.++.+.+.|+.++..++...|.++|+++.. ++ .+.+.+.+. -.+......+..+++ .+.|||++ ++...
T Consensus 67 ~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aq-----il-lt~~d~~~~-~~~lna~~~i~~Ll~--~g~iPVi~end~v~- 136 (363)
T TIGR01027 67 EKQALAAVGQVRLMQLYEQLFSQYGIKVAQ-----IL-LTRADFSDR-ERYLNARNTLEALLE--LGVVPIINENDTVA- 136 (363)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHcCCeEEE-----EE-EeccchhhH-HHHHHHHHHHHHHHh--CCCEEEEeCCCcee-
Confidence 457889999999999999999999999633 33 343333221 112234467788887 78999996 32111
Q ss_pred CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHH--HHHHHH-----hhcCCcchH
Q 023782 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLHP 186 (277)
Q Consensus 114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~--e~~~l~-----~~g~~v~~p 186 (277)
+..+++|++|++|+++|.+++|+.++|||||||||++||+.+|+|++|+++++. +..+++ .+|.++|+|
T Consensus 137 ----~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~ 212 (363)
T TIGR01027 137 ----TEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRT 212 (363)
T ss_pred ----eeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchH
Confidence 133677899999999999999999999999999999999999999999999864 455564 367789999
Q ss_pred H--HHHHHHhCCCcEEEEeccCCC---------CCeeEEeCCC
Q 023782 187 R--TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP 218 (277)
Q Consensus 187 ~--a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~~ 218 (277)
+ |+..|.++|++++|.|+..|+ ..||+|.+..
T Consensus 213 Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 255 (363)
T TIGR01027 213 KLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQA 255 (363)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCC
Confidence 7 889999999999999998653 4699998754
No 48
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.86 E-value=5.3e-21 Score=168.44 Aligned_cols=147 Identities=24% Similarity=0.257 Sum_probs=118.2
Q ss_pred hhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023782 33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 33 ~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
+...|.+...+++++++++...|...++++...+ . ....+.+. .+.+||++||++
T Consensus 59 ~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~- 113 (221)
T TIGR02076 59 ETFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP- 113 (221)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC-
Confidence 3345677778899999998888887777754221 1 23344555 678999999862
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh---hcCC---cchH
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHP 186 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~---~g~~---v~~p 186 (277)
| .+ +|++|+++|.+++|+++++||||||||++||+++|+|++|++++++|+.+++. +|.+ .+++
T Consensus 114 ---~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~ 183 (221)
T TIGR02076 114 ---G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDP 183 (221)
T ss_pred ---C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHH
Confidence 3 22 49999999999999999999999999999999999999999999999999876 2333 5799
Q ss_pred HHHHHHHhCCCcEEEEeccCCC---------CCeeEE
Q 023782 187 RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI 214 (277)
Q Consensus 187 ~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I 214 (277)
.+++.+.+++++++|.|+.+|+ ..||+|
T Consensus 184 ~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 184 LAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred HHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 9999999999999999987663 358876
No 49
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.85 E-value=1.4e-20 Score=168.72 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=120.9
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
...++++|.++|+++.++++.++..... |. ..++ .+.++++++ .+.|||++|+++.+.+|++.++ ++
T Consensus 82 n~~~~~~l~~~g~~a~~l~~~~~~~~~~---g~~~~~~----~~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~---~~ 149 (252)
T cd04241 82 NSIVVDALLEAGVPAVSVPPSSFFVTEN---GRIVSFD----LEVIKELLD--RGFVPVLHGDVVLDEGGGITIL---SG 149 (252)
T ss_pred HHHHHHHHHHCCCCeEEEChHHeEEecC---Ceeeeec----HHHHHHHHh--CCCEEEEcCCeEecCCCCeEEe---Ch
Confidence 3578899999999999999998765432 22 2233 478888998 8999999998888888877765 38
Q ss_pred hHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh-------cCCcchHH--HHHHHHhCCC
Q 023782 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-------GANVLHPR--TIIPVMRYDI 197 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~-------g~~v~~p~--a~~~a~~~~i 197 (277)
|++|+.+|.+|+|++++|||||||||++|| |++++|++++++|+.++... ...+|.++ ++..+.++|+
T Consensus 150 D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv 226 (252)
T cd04241 150 DDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGI 226 (252)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999 88999999999888888642 34688885 6777888999
Q ss_pred cEEEEeccCC
Q 023782 198 PIVIRNIFNL 207 (277)
Q Consensus 198 ~v~I~n~~~~ 207 (277)
+++|.|+.+|
T Consensus 227 ~v~I~~g~~~ 236 (252)
T cd04241 227 EVYIFNGDKP 236 (252)
T ss_pred eEEEEeCCCH
Confidence 9999998765
No 50
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.85 E-value=2.7e-20 Score=168.60 Aligned_cols=163 Identities=14% Similarity=0.211 Sum_probs=131.1
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCC------------------CC-CC-cCCCchHHHHHHHHHhhc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------------------SS-NQ-VDPDFSESEKRLEKWFSQ 98 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~------------------~~-g~-~~~~~~~~~~~i~~~l~~ 98 (277)
..++| .++..++ +.|.++|++|+++++.+..+++.. .| |. .+++ .+.++.+++
T Consensus 75 ~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~----~~~i~~ll~- 147 (268)
T PRK14058 75 IMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVN----TDLLKLLLK- 147 (268)
T ss_pred HHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEEC----HHHHHHHHH-
Confidence 55788 6777776 599999999999999987543211 11 11 1233 378999998
Q ss_pred CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh
Q 023782 99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178 (277)
Q Consensus 99 ~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~ 178 (277)
.+.|||++|+ +.+..|+++++ ++|++|+.+|.+|+|++++|||||||||++||+ +++++++++++|+.++..
T Consensus 148 -~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~ 219 (268)
T PRK14058 148 -AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSK 219 (268)
T ss_pred -CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhh
Confidence 8899999997 66677888766 589999999999999999999999999999984 478999999999999977
Q ss_pred hcCCcchHH--HHHHHHhCCC-cEEEEeccCCC-------CCeeEEeC
Q 023782 179 FGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR 216 (277)
Q Consensus 179 ~g~~v~~p~--a~~~a~~~~i-~v~I~n~~~~~-------~~GT~I~~ 216 (277)
....+|.|+ ++..+.++|+ +++|.|+..|+ ..||+|.+
T Consensus 220 ~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~ 267 (268)
T PRK14058 220 AAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN 267 (268)
T ss_pred ccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence 777889885 6777888899 69999987664 35999864
No 51
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.83 E-value=7.4e-20 Score=166.64 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=123.2
Q ss_pred cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC------------cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------------VDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~------------~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
|+ ++.. +++.|++.|++++++++.+..+++..+++. .++ .....+.++++++ .+.|||++| +
T Consensus 93 g~-ln~~-l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i-~~i~~~~i~~ll~--~g~IPVi~~-~ 166 (279)
T cd04250 93 GK-VNKE-IVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEV-TEVNPELLETLLE--AGYIPVIAP-V 166 (279)
T ss_pred Cc-hHHH-HHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccce-EEEcHHHHHHHHH--CCCeEEEcC-C
Confidence 74 5555 599999999999999999876665444331 011 0112478888888 889999999 5
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhh--cCCcchHH-
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR- 187 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~--g~~v~~p~- 187 (277)
+.++.|++++++ +|.+|+.+|.+|+|++++|||||||||++||+ ++++|++++++|+.+++.. ...+|.++
T Consensus 167 ~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl 240 (279)
T cd04250 167 GVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKV 240 (279)
T ss_pred ccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHH
Confidence 888889888774 89999999999999999999999999999985 4799999999999999754 35788885
Q ss_pred -HHHHHHhCCCc-EEEEeccCCC
Q 023782 188 -TIIPVMRYDIP-IVIRNIFNLS 208 (277)
Q Consensus 188 -a~~~a~~~~i~-v~I~n~~~~~ 208 (277)
++..+.++|++ ++|.|+..|+
T Consensus 241 ~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 241 EACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCc
Confidence 66677788886 9999987664
No 52
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.81 E-value=1.7e-19 Score=161.96 Aligned_cols=156 Identities=17% Similarity=0.196 Sum_probs=120.4
Q ss_pred hHHHHHhhh-cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCC-------C-cCCCchHHHHHHHHHhhcCCCceE
Q 023782 34 SFTDFVVGH-GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTI 104 (277)
Q Consensus 34 ~~~~~v~s~-Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~-~~~~~~~~~~~i~~~l~~~~~~Vp 104 (277)
...+.+.+. ++.++..++...+ ++|++++++++.+..+++..+++ . .+++ .+.++.+++ .+.||
T Consensus 67 ~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~----~~~l~~ll~--~g~ip 139 (252)
T cd04249 67 EQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATAND----PSLLNDLLK--AGFLP 139 (252)
T ss_pred HHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEc----HHHHHHHHH--CCCEE
Confidence 344454443 5566666666665 89999999999987666543332 1 1233 378888888 88999
Q ss_pred EecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CC
Q 023782 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--AN 182 (277)
Q Consensus 105 Vv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~ 182 (277)
|++| ++.+++|++++++ +|++|+.+|.+|+|+ +++||||+|||+.|| +++++++++|+.++...| ..
T Consensus 140 Vi~~-~g~~~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~g 208 (252)
T cd04249 140 IISS-IGADDQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITD 208 (252)
T ss_pred EECC-CEECCCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcC
Confidence 9998 4889999999885 899999999999999 689999999998765 689999999999997654 35
Q ss_pred cchH---HHHHHHHhCCCcEEEEeccCC
Q 023782 183 VLHP---RTIIPVMRYDIPIVIRNIFNL 207 (277)
Q Consensus 183 v~~p---~a~~~a~~~~i~v~I~n~~~~ 207 (277)
+|.| .|++.+...+++++|.|+..|
T Consensus 209 Gm~~kl~~a~~~~~~~~~~v~I~~g~~~ 236 (252)
T cd04249 209 GMIVKVNAALDAAQSLRRGIDIASWQYP 236 (252)
T ss_pred CcHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 6666 466666767789999998765
No 53
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.81 E-value=3.3e-19 Score=162.62 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=125.0
Q ss_pred cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC---------CC-cCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023782 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
| .++ ..+.+.|+++|+++.++++.+..+++...+ |. ..++ .+.++++++ .|.|||+++ ++.
T Consensus 102 G-~l~-~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~----~~~l~~ll~--~g~vpVv~~-~~~ 172 (283)
T PRK00942 102 G-KVN-KELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVN----PALLEALLE--AGYIPVISP-IGV 172 (283)
T ss_pred C-chH-HHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEEC----HHHHHHHHH--CCCEEEEcC-cEE
Confidence 6 455 445599999999999999998766655333 11 1233 478899998 889999997 588
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--H
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T 188 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a 188 (277)
+.+|++++++ +|++|+.||.+|+|++++|||||||||++ +++++++++++|+.+++..+ .++|.|+ +
T Consensus 173 ~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~ 243 (283)
T PRK00942 173 GEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEA 243 (283)
T ss_pred CCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence 9999998884 89999999999999999999999999986 47899999999999998654 3678775 5
Q ss_pred HHHHHhCCC-cEEEEeccCC----------CCCeeEEeC
Q 023782 189 IIPVMRYDI-PIVIRNIFNL----------SVPGIMICR 216 (277)
Q Consensus 189 ~~~a~~~~i-~v~I~n~~~~----------~~~GT~I~~ 216 (277)
+..+.++|+ +++|.|+..| +..||+|.+
T Consensus 244 a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~ 282 (283)
T PRK00942 244 ALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP 282 (283)
T ss_pred HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence 566677887 4999987654 347999865
No 54
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.80 E-value=3.1e-19 Score=158.19 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=113.3
Q ss_pred cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC-----CC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCC
Q 023782 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN 116 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G 116 (277)
++.++. .+.+.|+++|++++++++.+..+++...+ +. .++. ....+.++++++ .+.|||++|+ +.+.+|
T Consensus 75 ~g~~~~-~i~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~-~i~~~~i~~~l~--~g~IPVi~~~-~~~~~g 149 (231)
T TIGR00761 75 IGQVNK-ELVALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIK-KVNKALLEALLK--AGYIPVISSL-ALTAEG 149 (231)
T ss_pred hcchHH-HHHHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceE-EEcHHHHHHHHH--CCCeEEECCC-ccCCCC
Confidence 334554 45569999999999999998644443222 11 1111 112488999998 8899999995 888889
Q ss_pred CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--HHHHH
Q 023782 117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPV 192 (277)
Q Consensus 117 ~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~a 192 (277)
++++++ +|++|+.||.+|+|++++|||||||||++||+ ++|++++++|+.++++.| ..+|.|+ ++..+
T Consensus 150 ~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a 221 (231)
T TIGR00761 150 QALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEA 221 (231)
T ss_pred cEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 999885 89999999999999999999999999999874 799999999999998866 5788885 66777
Q ss_pred HhCCCc
Q 023782 193 MRYDIP 198 (277)
Q Consensus 193 ~~~~i~ 198 (277)
.++|++
T Consensus 222 ~~~gv~ 227 (231)
T TIGR00761 222 LRGGVK 227 (231)
T ss_pred HHcCCC
Confidence 888887
No 55
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.79 E-value=7.7e-19 Score=157.95 Aligned_cols=147 Identities=17% Similarity=0.238 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC----------CC-cCCCchHHHHHHHHHhhcCCCceEEecCccc
Q 023782 43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA 111 (277)
Q Consensus 43 Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~ 111 (277)
| .++.. +++.|+++|++++++++.+..+++..++ |. ..++ .+.++.+++ .+.|||++| ++
T Consensus 77 g-~ln~~-i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~----~~~l~~ll~--~g~ipVv~~-~~ 147 (256)
T cd04238 77 G-KVNKE-LVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVN----PELLETLLE--AGYIPVIAP-IA 147 (256)
T ss_pred C-chHHH-HHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEEC----HHHHHHHHH--CCCEEEECC-cE
Confidence 6 45555 4999999999999999998766654332 21 1233 378888988 889999998 58
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--
Q 023782 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR-- 187 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~-- 187 (277)
.++.|++++++ +|++|+++|.+|+|++++|||||+|||++ +++++++++++|+.++...+ ...|.|+
T Consensus 148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~ 218 (256)
T cd04238 148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE 218 (256)
T ss_pred ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence 88889988874 89999999999999999999999999986 27899999999999987533 4778885
Q ss_pred HHHHHHhCCC-cEEEEeccCC
Q 023782 188 TIIPVMRYDI-PIVIRNIFNL 207 (277)
Q Consensus 188 a~~~a~~~~i-~v~I~n~~~~ 207 (277)
++..+.++++ +++|.|+..|
T Consensus 219 ~a~~~~~~g~~~v~I~~g~~~ 239 (256)
T cd04238 219 AALEALEGGVRKVHIIDGRVP 239 (256)
T ss_pred HHHHHHHhCCCEEEEeCCCCC
Confidence 5566667776 5999998765
No 56
>PLN02512 acetylglutamate kinase
Probab=99.79 E-value=2.5e-18 Score=158.78 Aligned_cols=155 Identities=17% Similarity=0.210 Sum_probs=123.8
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCC---------C-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN---------Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g---------~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~ 117 (277)
...+++.|+++|++++++++.+..+++..+++ . ..++ .+.++.+++ .+.|||++|+ +.++.|+
T Consensus 129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~----~~~i~~lL~--~g~IPVi~~~-~~d~~g~ 201 (309)
T PLN02512 129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVD----PTVLRPLVD--DGHIPVIATV-AADEDGQ 201 (309)
T ss_pred HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecC----HHHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence 56688999999999999999885444433221 1 1233 378899998 8899999996 8888898
Q ss_pred ceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--HHHHHH
Q 023782 118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPVM 193 (277)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~a~ 193 (277)
+.++ ++|.+|+.||.+|+|++++|||||||||+++| +++++|++++++|+.++...| ..+|.|+ ++..+.
T Consensus 202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~ 275 (309)
T PLN02512 202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL 275 (309)
T ss_pred Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 8777 48999999999999999999999999999864 347899999999999987543 5789885 556677
Q ss_pred hCCCc-EEEEeccCC----------CCCeeEEe
Q 023782 194 RYDIP-IVIRNIFNL----------SVPGIMIC 215 (277)
Q Consensus 194 ~~~i~-v~I~n~~~~----------~~~GT~I~ 215 (277)
++|++ ++|.|+..| +..||+|.
T Consensus 276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~ 308 (309)
T PLN02512 276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT 308 (309)
T ss_pred HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence 88996 899987655 24688885
No 57
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.79 E-value=1.6e-18 Score=156.54 Aligned_cols=191 Identities=14% Similarity=0.167 Sum_probs=123.5
Q ss_pred cHHHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEc------ccc-ceeecC--CCCCCcC
Q 023782 12 SYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVD 82 (277)
Q Consensus 12 ~~~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~g~~~ 82 (277)
+.++++.+.++|+++.++ .+.++.+|.--.++....+....|++....+ ... ..+.+. ..++...
T Consensus 46 ~~~~i~~la~~i~~~~~~------~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~ 119 (262)
T cd04255 46 GAEAVLPLVEEIVALRPE------HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSK 119 (262)
T ss_pred cHHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 456677777777776642 2344445554455533333445666544432 111 001111 1122111
Q ss_pred CCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC------chHHHHHHHHHhCcceEEEeeccccccccCC
Q 023782 83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156 (277)
Q Consensus 83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg------sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP 156 (277)
+. ......++++++ .+.|||++|+.+.+ ..++++|+| +|++|+++|.+++|+++++||||||||++||
T Consensus 120 i~-~~~~~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP 193 (262)
T cd04255 120 VG-HGDLLQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADP 193 (262)
T ss_pred cc-cccHHHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCC
Confidence 10 011256888887 89999999986533 223444444 8999999999999999999999999999999
Q ss_pred CCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhC--CCcEEEEeccCCC---------CCeeEEe
Q 023782 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNLS---------VPGIMIC 215 (277)
Q Consensus 157 ~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~--~i~v~I~n~~~~~---------~~GT~I~ 215 (277)
+.+|++++|++++++|+.++.. +..+|...+...+... .++++|.|+..|+ ..||+|.
T Consensus 194 ~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 194 KKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred CCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence 9999999999999998877742 2334666666555533 2699999987663 4688773
No 58
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.78 E-value=9.8e-18 Score=153.90 Aligned_cols=194 Identities=15% Similarity=0.264 Sum_probs=151.0
Q ss_pred cccHHHHHHHHHHHHhhhc-C---------------------CCCh--hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEE
Q 023782 10 ELSYEFIRSTYNFLSNVDS-G---------------------HATE--SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWM 65 (277)
Q Consensus 10 ~~~~~~i~~~~~~L~~~~~-~---------------------~~~~--~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l 65 (277)
+++.++++.+..++.++.+ | ..+. ..+-.+.|.|+......+...|..+|+++
T Consensus 24 ~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v--- 100 (369)
T COG0263 24 GLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV--- 100 (369)
T ss_pred CcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee---
Confidence 3667788888887777653 1 1112 23555788999999999999999999985
Q ss_pred ccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCcee--ccCCCchHHHHHHHHHhCcceEE
Q 023782 66 DTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVT 143 (277)
Q Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~--lgrggsD~~A~~lA~~l~A~~l~ 143 (277)
.++.+ |.+.+.+ .-.|.+.+..+..+++ .|.|||+ |+|.-+.+ +-.|++|.+++++|...+||.++
T Consensus 101 --~QiLL-Tr~D~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NENDtva~~EikfGDND~LsA~VA~lv~ADlLv 168 (369)
T COG0263 101 --GQILL-TRDDFSD-RRRYLNARNTLSALLE--LGVVPII------NENDTVATEEIKFGDNDTLSALVAILVGADLLV 168 (369)
T ss_pred --eEEEe-ehhhhhh-HHHHHHHHHHHHHHHH--CCceeee------cCCCceeeeeeeecCCchHHHHHHHHhCCCEEE
Confidence 45544 4333322 1235556677888887 8999997 56665544 44578899999999999999999
Q ss_pred EeeccccccccCCCCCCCCeEEeeeCH--HHHHHHHh-----hcCCcchHH--HHHHHHhCCCcEEEEeccCCC------
Q 023782 144 IWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNLS------ 208 (277)
Q Consensus 144 i~tDV~Gvyt~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p~--a~~~a~~~~i~v~I~n~~~~~------ 208 (277)
++||+||+||+||+.+|+|++|++++- .|...++. +|.++|..+ |++.|.++|++++|.++..|+
T Consensus 169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~ 248 (369)
T COG0263 169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDAL 248 (369)
T ss_pred EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHH
Confidence 999999999999999999999999874 57777754 567899885 889999999999999998764
Q ss_pred ---CCeeEEeCCC
Q 023782 209 ---VPGIMICRPP 218 (277)
Q Consensus 209 ---~~GT~I~~~~ 218 (277)
..||++.+..
T Consensus 249 ~~~~~GT~F~~~~ 261 (369)
T COG0263 249 EGEAVGTLFEPQA 261 (369)
T ss_pred hCCCCccEEecCC
Confidence 5799998655
No 59
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.78 E-value=5.1e-18 Score=155.01 Aligned_cols=159 Identities=16% Similarity=0.201 Sum_probs=126.5
Q ss_pred hcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC-----CCC----cCCCchHHHHHHHHHhhcCCCceEEecCcccc
Q 023782 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS 112 (277)
Q Consensus 42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~ 112 (277)
.|+. ...+++.|.+.|++++++++.+..+++... ++. .+++. +.++.+++ .+.|||++|+ +.
T Consensus 101 ~g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~ 171 (284)
T CHL00202 101 AGKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AA 171 (284)
T ss_pred hhHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-cc
Confidence 4666 788899999999999999999865543221 121 23443 88899998 8899999995 88
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchHH--H
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T 188 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a 188 (277)
+..|++.+++ +|++|+.+|.+|+|++++|||||+|||+++ . .| .+++++++++|+.+++..| ..+|.|+ +
T Consensus 172 ~~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~-d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~a 245 (284)
T CHL00202 172 DHDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADI-N-DP-NSLISTLNIKEARNLASTGIISGGMIPKVNC 245 (284)
T ss_pred CCCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCC-C-CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHH
Confidence 8889988874 899999999999999999999999999842 1 12 3799999999999998654 4789885 6
Q ss_pred HHHHHhCCCc-EEEEeccCCC----------CCeeEEe
Q 023782 189 IIPVMRYDIP-IVIRNIFNLS----------VPGIMIC 215 (277)
Q Consensus 189 ~~~a~~~~i~-v~I~n~~~~~----------~~GT~I~ 215 (277)
+..+.++|++ ++|.++..|+ ..||+|.
T Consensus 246 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 246 CIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred HHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 6778888997 8999887653 3688874
No 60
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.78 E-value=2.1e-18 Score=155.41 Aligned_cols=157 Identities=14% Similarity=0.189 Sum_probs=122.1
Q ss_pred hHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCC-------------------CC-cCCCchHHHHHHH
Q 023782 34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-------------------NQ-VDPDFSESEKRLE 93 (277)
Q Consensus 34 ~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~-------------------g~-~~~~~~~~~~~i~ 93 (277)
+..+.+....+.++..+ ++.|.++|++++++++.+..+++.... |. ..++ .+.++
T Consensus 65 ~~l~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~----~~~i~ 139 (257)
T cd04251 65 ETLEVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVN----SDLIE 139 (257)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEc----HHHHH
Confidence 34444444446677775 559999999999999988644332211 11 1233 38889
Q ss_pred HHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHH
Q 023782 94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173 (277)
Q Consensus 94 ~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~ 173 (277)
.+++ .+.|||++++ +.+.+|++.++ ++|++|+.+|.+|+|++++|||||+|||++ ++++++++++|+
T Consensus 140 ~ll~--~g~vpVi~~~-~~~~~G~~~~i---~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~ 206 (257)
T cd04251 140 ALLD--AGYLPVVSPV-AYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDA 206 (257)
T ss_pred HHHh--CCCeEEEeCc-EECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHH
Confidence 9998 8899999886 66788998887 489999999999999999999999999963 789999999999
Q ss_pred HHHHhhcCCcchHH--HHHHHHhCCCc-EEEEeccCCC
Q 023782 174 WEMSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS 208 (277)
Q Consensus 174 ~~l~~~g~~v~~p~--a~~~a~~~~i~-v~I~n~~~~~ 208 (277)
.++...-..+|.|+ ++..+.++|++ ++|.++..|+
T Consensus 207 ~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~ 244 (257)
T cd04251 207 ESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS 244 (257)
T ss_pred HHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 99976556788884 67778888885 8898887664
No 61
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.78 E-value=1.5e-17 Score=150.13 Aligned_cols=169 Identities=18% Similarity=0.240 Sum_probs=125.2
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCC
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD 115 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~ 115 (277)
+....+.|......++.+.|.++|+.+..+ .++. ..+.. ...+....+.++++++ .+.|||+.|. .....
T Consensus 72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~aqi-----Llt~-~d~~~-~~~~~n~~~~l~~lL~--~g~VPIinen-d~~~~ 141 (264)
T PTZ00489 72 KQALASMGQPLLMHMYYTELQKHGILCAQM-----LLAA-YDLDS-RKRTINAHNTIEVLIS--HKVIPIINEN-DATAL 141 (264)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCCCeEEEe-----eeec-ccccc-chhhHHHHHHHHHHHH--CCCEEEECCC-CCccc
Confidence 344556777777888999999999987433 2222 22211 2234566788999998 8999999883 11112
Q ss_pred CCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE---EeeeCHHHHHHHH----hhcCCcchHH-
Q 023782 116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHPR- 187 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~---i~~is~~e~~~l~----~~g~~v~~p~- 187 (277)
.++. + |++|.+|+++|..++|+.++|+|||||||++||+.+|+|++ +++++.++..... ..+.++|.++
T Consensus 142 ~e~~-~--gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl 218 (264)
T PTZ00489 142 HELV-F--GDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKL 218 (264)
T ss_pred ceeE-e--CChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHH
Confidence 2332 2 56899999999999999999999999999999999999997 7788887664432 2456788884
Q ss_pred -HHHHHHhCCCcEEEEeccCCC-----------CCeeEEeCC
Q 023782 188 -TIIPVMRYDIPIVIRNIFNLS-----------VPGIMICRP 217 (277)
Q Consensus 188 -a~~~a~~~~i~v~I~n~~~~~-----------~~GT~I~~~ 217 (277)
++..+.++|++++|.|+..|+ ..||+|.+.
T Consensus 219 ~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 219 QAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence 788899999999999987552 269999764
No 62
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.77 E-value=6.7e-18 Score=154.13 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=127.0
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecC-ccccCC
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTP 114 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~~ 114 (277)
+-.+.+.|+.....++.+.|.++|+.+ .++++ +.+.|.+.+. +....+.++.+++ .+.|||++| +...+.
T Consensus 94 ~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~ll-t~~d~~~~~~-~~~~~~~l~~lL~--~g~iPVi~~nD~v~~~ 164 (284)
T cd04256 94 GRACAAVGQSGLMALYEAMFTQYGITV-----AQVLV-TKPDFYDEQT-RRNLNGTLEELLR--LNIIPIINTNDAVSPP 164 (284)
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCcH-----HHeee-eccccccHHH-HHHHHHHHHHHHH--CCCEEEEeCCCccccc
Confidence 355778999999999999999999885 56644 5444543221 2344577788887 889999986 333221
Q ss_pred -----CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh-----hcCCcc
Q 023782 115 -----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVL 184 (277)
Q Consensus 115 -----~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~ 184 (277)
+|+.. ...+++|++|+++|..++|+.++++|||||||++||+ .|++++|++++..+..++.. .|..+|
T Consensus 165 ~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 165 PEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 22221 1124689999999999999999999999999999997 69999999999887766632 346899
Q ss_pred hHH--HHHHHHhCCCcEEEEeccCC---------CCCeeEE
Q 023782 185 HPR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMI 214 (277)
Q Consensus 185 ~p~--a~~~a~~~~i~v~I~n~~~~---------~~~GT~I 214 (277)
.|+ ++..+.++|++++|.|+..| +..||+|
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~ 283 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence 985 88889999999999998765 3568876
No 63
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.77 E-value=5.3e-18 Score=172.04 Aligned_cols=171 Identities=16% Similarity=0.221 Sum_probs=127.7
Q ss_pred HHH--HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc-cc
Q 023782 35 FTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF-IA 111 (277)
Q Consensus 35 ~~~--~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~-i~ 111 (277)
..+ .++|+||.++++++..+|++.|+++ .+++ .+++.|++... +....+.++.+++ .+.|||+.|. ..
T Consensus 90 ~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qil-lT~~~~~~~~~-~~~~~~~l~~ll~--~g~iPVv~~nd~v 160 (718)
T PLN02418 90 ELDGKACAAVGQSELMALYDTLFSQLDVTA-----SQLL-VTDSDFRDPDF-RKQLSETVESLLD--LRVIPIFNENDAV 160 (718)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHcCCeE-----EEEE-ecHhHhcchhH-hHhHHHHHHHHHH--CCCEEEEcCCCCc
Confidence 445 7899999999999999999999954 4553 45444543222 2345678888887 7899999873 22
Q ss_pred cCCCCC----ceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHH-HHh-----hcC
Q 023782 112 STPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSY-----FGA 181 (277)
Q Consensus 112 ~~~~G~----~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~-l~~-----~g~ 181 (277)
.+..+. ...+ +++|++|+++|.+++|+.++|||||||||++||+ .+++++|++++..+... +.. .+.
T Consensus 161 ~~~~~~~~~~~~~~--~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~t 237 (718)
T PLN02418 161 STRRAPYEDSSGIF--WDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGR 237 (718)
T ss_pred cccccccccccCee--cCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCC
Confidence 222110 0011 3689999999999999999999999999999998 58999999998655432 221 246
Q ss_pred CcchH--HHHHHHHhCCCcEEEEeccCCC---------CCeeEEeCC
Q 023782 182 NVLHP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRP 217 (277)
Q Consensus 182 ~v~~p--~a~~~a~~~~i~v~I~n~~~~~---------~~GT~I~~~ 217 (277)
++|.| .++..+.++|++++|.|+..|+ ..||+|.+.
T Consensus 238 GGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 284 (718)
T PLN02418 238 GGMTAKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD 284 (718)
T ss_pred CCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 79999 5788899999999999987653 579999763
No 64
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.69 E-value=1.6e-16 Score=139.02 Aligned_cols=154 Identities=18% Similarity=0.150 Sum_probs=117.9
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHH-HHHHHHHhhcCCCceEEecCccccCCC-CCceeccCCC
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES-EKRLEKWFSQSPSNTIIATGFIASTPD-NIPTTLKRDG 125 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~i~~~l~~~~~~VpVv~G~i~~~~~-G~~~~lgrgg 125 (277)
+..+++.|.+.|++++.+.|..+. +.+++ +.+ + .+.++.+++ .+.|||++|++..+.+ |.....|
T Consensus 83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr-----~~~--~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiSG--- 149 (252)
T COG1608 83 NSIVVDALLDAGVRAVSVVPISFS-TFNGR-----ILY--TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIISG--- 149 (252)
T ss_pred HHHHHHHHHhcCCccccccCccee-ecCCc-----eee--chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEec---
Confidence 567889999999999988888875 23322 222 2 378888898 8999999999999977 5545444
Q ss_pred chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh--hcCCcchH--HHHHHHHhCCCcEEE
Q 023782 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHP--RTIIPVMRYDIPIVI 201 (277)
Q Consensus 126 sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~--~g~~v~~p--~a~~~a~~~~i~v~I 201 (277)
|..+..||+.|++++++|+|||||||+.||.+.|+++.+++++..++..=+. -=..+|-- +++..+.+.+.++++
T Consensus 150 -DdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi 228 (252)
T COG1608 150 -DDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYI 228 (252)
T ss_pred -cHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEE
Confidence 9999999999999999999999999999999999999998876653322211 00245544 355556667778999
Q ss_pred EeccCC---------CCCeeEEe
Q 023782 202 RNIFNL---------SVPGIMIC 215 (277)
Q Consensus 202 ~n~~~~---------~~~GT~I~ 215 (277)
+|+..| +.+||+|.
T Consensus 229 ~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 229 FNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred ECCCCHHHHHHHhcCCCCceEec
Confidence 998755 46899985
No 65
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.68 E-value=9.5e-16 Score=137.39 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=130.3
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCC--------CCC----cCCCchHHHHHHHHHhhcCCCceEEecC
Q 023782 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATG 108 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G 108 (277)
.+|+. .+-+++.|.+.|.+++.++..+-.+++..+ +|. ..+| .+.++.+++ ++.|||+++
T Consensus 79 l~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn----~~~i~~ll~--~~~IpViap 150 (265)
T COG0548 79 LGGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVN----PELIERLLD--NGAIPVIAP 150 (265)
T ss_pred HHHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEEC----HHHHHHHHh--CCCceEEec
Confidence 34666 788999999999999999998854443222 221 1233 378888888 889999999
Q ss_pred ccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc--CCcchH
Q 023782 109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP 186 (277)
Q Consensus 109 ~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p 186 (277)
. +.+.+|++.++. +|++|+.+|.+|+|++++++|||+|||+..|+ + +++++++.+|+.++...| ..+|.|
T Consensus 151 i-a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~ 222 (265)
T COG0548 151 I-AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIP 222 (265)
T ss_pred c-eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHH
Confidence 5 999999999984 99999999999999999999999999988754 2 799999999999999877 578999
Q ss_pred H--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEe
Q 023782 187 R--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMIC 215 (277)
Q Consensus 187 ~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~ 215 (277)
+ ++..|.+.|++ ++|.|+..| +..||.|.
T Consensus 223 Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 223 KVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEec
Confidence 5 77889999995 999998755 35688875
No 66
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.64 E-value=5.6e-15 Score=150.14 Aligned_cols=164 Identities=12% Similarity=0.189 Sum_probs=119.0
Q ss_pred HHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCC
Q 023782 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI 117 (277)
Q Consensus 38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~ 117 (277)
.+.+.|+.....++...|...++.+ .++++ +.+.|.+... +....+.++.+++ .+.|||+.+ ++.
T Consensus 87 a~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~Ll-t~~d~~~~~~-~~~~~~~l~~lL~--~g~iPVin~------nD~ 151 (715)
T TIGR01092 87 ACAAVGQSGLMALYETMFTQLDITA-----AQILV-TDLDFRDEQF-RRQLNETVHELLR--MNVVPVVNE------NDA 151 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCee-----EEEEe-chhhcccHHH-HHHHHHHHHHHHH--CCCEEEEcC------CCc
Confidence 3456666666666777777777764 55544 4444432211 3344678888887 889999975 122
Q ss_pred ceeccC---------CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHH-HHHh-----hcCC
Q 023782 118 PTTLKR---------DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMSY-----FGAN 182 (277)
Q Consensus 118 ~~~lgr---------ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~-~l~~-----~g~~ 182 (277)
+++.++ +++|++|+++|.+++|+.++++|||||||++||+ .|++++|++++..+.. ++.. .+.+
T Consensus 152 V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tG 230 (715)
T TIGR01092 152 VSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRG 230 (715)
T ss_pred ccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCC
Confidence 333332 3579999999999999999999999999999996 6999999999875444 3322 3467
Q ss_pred cchH--HHHHHHHhCCCcEEEEeccCC---------CCCeeEEeCC
Q 023782 183 VLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP 217 (277)
Q Consensus 183 v~~p--~a~~~a~~~~i~v~I~n~~~~---------~~~GT~I~~~ 217 (277)
+|.+ +++..+.++|++++|.|+..| +..||+|.+.
T Consensus 231 GM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 231 GMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred CchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 8988 578889999999999998765 3469999664
No 67
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.57 E-value=3.9e-14 Score=128.31 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=114.1
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeec----C-CCCCC-cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceec
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVN----P-TSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~----~-~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~l 121 (277)
...+++.|++.|++++++++...++.. + +.-|. .++|. +.++.+++ .|.|||+++ ++.+.+|++.++
T Consensus 100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni 172 (271)
T cd04236 100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL 172 (271)
T ss_pred HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence 667899999999999999987533321 1 11222 24554 88999998 899999999 589999999998
Q ss_pred cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-HHHHHHHhhc--CCcc---hH--HHHHHHH
Q 023782 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HP--RTIIPVM 193 (277)
Q Consensus 122 grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~---~p--~a~~~a~ 193 (277)
+ +|..|+.+|.+|+|++++|+||++|||+. +.++|++++. +|+.+|...| ..+| -| +++..++
T Consensus 173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l 243 (271)
T cd04236 173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL 243 (271)
T ss_pred C---HHHHHHHHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence 5 89999999999999999999999999963 2579999995 9999998876 4677 56 3677788
Q ss_pred hCCCcEEEEec
Q 023782 194 RYDIPIVIRNI 204 (277)
Q Consensus 194 ~~~i~v~I~n~ 204 (277)
..++.++|.+.
T Consensus 244 ~~g~sv~I~~~ 254 (271)
T cd04236 244 PSMSSAVITSA 254 (271)
T ss_pred ccCCeEEEeCh
Confidence 89999989873
No 68
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.56 E-value=1e-13 Score=127.33 Aligned_cols=120 Identities=19% Similarity=0.218 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCceEEecCc----cccCCCCCceec-cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023782 90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~----i~~~~~G~~~~l-grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~ 164 (277)
+.++.+++ .+.|||++|. +..+ +|...+. ...++|++|+++|..++|+.++++|||||||+.+| .|++++
T Consensus 172 ~~I~~Ll~--~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~ 246 (308)
T cd04235 172 EAIKTLVD--NGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA 246 (308)
T ss_pred HHHHHHHH--CCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence 55777787 8999999986 2322 2332221 12356999999999999999999999999999654 489999
Q ss_pred EeeeCHHHHHHHHh---hcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEE
Q 023782 165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMI 214 (277)
Q Consensus 165 i~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I 214 (277)
|++++++|+.++.. ++.++|.|+ |++.+.+.+.+++|.+..+. ...||+|
T Consensus 247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I 307 (308)
T cd04235 247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI 307 (308)
T ss_pred cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence 99999999999875 456799997 66777777788899774321 1268887
No 69
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=127.94 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=92.7
Q ss_pred HHHHHHHhhcCCCceEEecCc--ccc-CCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023782 89 EKRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~--i~~-~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~ 164 (277)
.+.++.+++ .+.|||++|+ ++. ++++.+.+.. .+++|.+|+++|.+|+|++++++|||||||++|| .|++++
T Consensus 175 ~~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~ 250 (314)
T PRK12353 175 IEAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKK 250 (314)
T ss_pred HHHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeE
Confidence 477888888 8999999987 222 2334332211 3568999999999999999999999999999766 389999
Q ss_pred EeeeCHHHHHHHHh---hcCCcchHH--HH-HHH-HhCCCcEEEEecc------CCCCCeeEEeC
Q 023782 165 LRTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIF------NLSVPGIMICR 216 (277)
Q Consensus 165 i~~is~~e~~~l~~---~g~~v~~p~--a~-~~a-~~~~i~v~I~n~~------~~~~~GT~I~~ 216 (277)
|++++++|+.++.. .+.++|.|+ ++ +.+ .+.+++++|.|.. +.+ .||+|.+
T Consensus 251 i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 251 LDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEecC
Confidence 99999999988864 345778885 44 445 4778999998743 223 7998853
No 70
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.55 E-value=1.3e-13 Score=123.59 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=107.6
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccccceeec---CCCCC---C-cCCCchHHHHHHHHHhhcCCCceEEecCccccC
Q 023782 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST 113 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~---~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~ 113 (277)
+.++. ...+++.|.++|++++++++..+ ... ...+| . .++|. +.++++++ .+.|||++|+ +.+
T Consensus 72 al~~v--n~~iv~~l~~~g~~a~~l~~~~~-~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~ 141 (248)
T cd04252 72 VFLEE--NLKLVEALERNGARARPITSGVF-EAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AET 141 (248)
T ss_pred HHHHH--HHHHHHHHHhCCCCcccccCceE-EEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eEC
Confidence 45554 56677789999999999987633 221 11122 2 23444 88999998 8999999995 778
Q ss_pred CCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-HHHHHHHhhc--CCcchHH--H
Q 023782 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--T 188 (277)
Q Consensus 114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~~p~--a 188 (277)
..|++.+++ +|..|+.+|.+|+|++++|+|||+|||+. +.+++++++. +++.++...+ ..+|.|+ +
T Consensus 142 ~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~ 212 (248)
T cd04252 142 PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKE 212 (248)
T ss_pred CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHH
Confidence 889888874 89999999999999999999999999964 3579999986 4777777654 3678885 4
Q ss_pred HHHHHhC--CC-cEEEEec
Q 023782 189 IIPVMRY--DI-PIVIRNI 204 (277)
Q Consensus 189 ~~~a~~~--~i-~v~I~n~ 204 (277)
+..+.+. ++ .++|.+.
T Consensus 213 ~~~~~~~~~~~~~v~i~~~ 231 (248)
T cd04252 213 IKELLDTLPRSSSVSITSP 231 (248)
T ss_pred HHHHHHhCCCceEEEEECC
Confidence 4455555 33 4777653
No 71
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.51 E-value=5.7e-13 Score=122.89 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=89.1
Q ss_pred HHHHHHhhcCCCceEEecCc--ccc-CCCCCceec-cCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 90 KRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~--i~~-~~~G~~~~l-grggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
+.++.+++ .|.++|.+|. ++. +++|.+... -.+++|.+|+++|.+|+||.++++|||||||++ | ..|+++++
T Consensus 173 ~~I~~LL~--~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i 248 (310)
T TIGR00746 173 ETIKTLVE--NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKAL 248 (310)
T ss_pred HHHHHHHH--CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCC
Confidence 57788887 7777666653 222 344443211 024689999999999999999999999999986 4 35889999
Q ss_pred eeeCHHHHHHHHh---hcCCcchHH--H-HHHHHhCCCcEEEEecc------CCCCCeeEEe
Q 023782 166 RTLSYQEAWEMSY---FGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMIC 215 (277)
Q Consensus 166 ~~is~~e~~~l~~---~g~~v~~p~--a-~~~a~~~~i~v~I~n~~------~~~~~GT~I~ 215 (277)
++++++|+.++.. ++.++|.|+ + ++.+.+.+.+++|.|.. +.+ .||+|.
T Consensus 249 ~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 249 REVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT 309 (310)
T ss_pred cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence 9999999999874 456788884 3 46666667889998743 234 799885
No 72
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.50 E-value=3.5e-13 Score=122.95 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=110.7
Q ss_pred hcHHHHHHHHHHHHHHCCCCeEEEccccceee-----cCC--------CCC---C-cCCCchHHHHHHHHHhhcCCCceE
Q 023782 42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIV-----NPT--------SSN---Q-VDPDFSESEKRLEKWFSQSPSNTI 104 (277)
Q Consensus 42 ~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~-----~~~--------~~g---~-~~~~~~~~~~~i~~~l~~~~~~Vp 104 (277)
.|+. ...+.+.|++ |++++++.+..+... ... .++ . ..++ .+.++.+++ .+.||
T Consensus 94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~----~~~i~~lL~--~g~ip 164 (280)
T cd04237 94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRID----ADAIRRQLD--QGSIV 164 (280)
T ss_pred HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEc----HHHHHHHHH--CCCEE
Confidence 4665 6667777755 888876654322111 110 111 1 1233 388899998 88999
Q ss_pred EecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhc---C
Q 023782 105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A 181 (277)
Q Consensus 105 Vv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g---~ 181 (277)
|+++ ++.+.+|++.+++ +|..|+.||.+|+|++++|+|||||||++ +.+++++++.+|+.++...+ .
T Consensus 165 v~~~-~g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ 234 (280)
T cd04237 165 LLSP-LGYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT 234 (280)
T ss_pred EECC-ceECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence 9998 4888889988874 79999999999999999999999999963 36899999999999998755 3
Q ss_pred CcchHH--HHHHHHhCCC-cEEEEeccCC
Q 023782 182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL 207 (277)
Q Consensus 182 ~v~~p~--a~~~a~~~~i-~v~I~n~~~~ 207 (277)
.+|.|+ ++..+.++|+ +++|.++..|
T Consensus 235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~ 263 (280)
T cd04237 235 NDTARLLQAAIEACRGGVPRVHLISYAED 263 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 789996 6677778899 5999998665
No 73
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.48 E-value=6.5e-13 Score=128.31 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=115.9
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCC-------------CCCC----cCCCchHHHHHHHHHhhcCCCceEEecCcc
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI 110 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i 110 (277)
...+.+.|. .|++++++.+..+...+.. .+|. ..++ .+.++.+++ .|.|||+++ +
T Consensus 105 ~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~----~~~i~~ll~--~g~ipV~~~-i 176 (441)
T PRK05279 105 RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRID----AEAIRRQLD--SGAIVLLSP-L 176 (441)
T ss_pred HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEe----HHHHHHHHH--CCCeEEECC-c
Confidence 566777774 5999888766544332210 1221 1223 378888998 889999966 5
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh---hc--CCcch
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG--ANVLH 185 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~---~g--~~v~~ 185 (277)
+.+.+|++.+++ +|.+|+.||.+|+|++++|+|||||||+. ++++|++++.+|+.++.. .| ..+|.
T Consensus 177 ~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 177 GYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred eECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 888889988774 89999999999999999999999999953 478999999999988875 33 47898
Q ss_pred HH--HHHHHHhCCC-cEEEEeccCC----------CCCeeEEeCC
Q 023782 186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP 217 (277)
Q Consensus 186 p~--a~~~a~~~~i-~v~I~n~~~~----------~~~GT~I~~~ 217 (277)
|+ ++..+.++|+ +++|.++..| +..||+|...
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 95 5566677899 5999998655 3479999875
No 74
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.44 E-value=1.7e-12 Score=124.97 Aligned_cols=117 Identities=13% Similarity=0.122 Sum_probs=96.9
Q ss_pred HHHHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeC
Q 023782 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS 169 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is 169 (277)
+.++.+++ .+.|||+++. +.+.+|++.+++ +|..|+.||.+|+|++++|+|||+|||++ +.++|++|+
T Consensus 151 ~~l~~ll~--~g~ipvi~pi-~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~ 218 (429)
T TIGR01890 151 EGIRRQLD--AGSIVLLSPL-GHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELS 218 (429)
T ss_pred HHHHHHHH--CCCeEEECCc-ccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCC
Confidence 88999998 8899999984 888899999885 89999999999999999999999999963 367999999
Q ss_pred HHHHHHHHhhcCCc-chHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCCC
Q 023782 170 YQEAWEMSYFGANV-LHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRPP 218 (277)
Q Consensus 170 ~~e~~~l~~~g~~v-~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~~ 218 (277)
.+|+.++....... |.|+ ++..|.+.|++ ++|.++..| +..||+|....
T Consensus 219 ~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 219 PQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 99999887543333 4775 66777888975 999998654 35799998754
No 75
>PRK12686 carbamate kinase; Reviewed
Probab=99.43 E-value=1.1e-12 Score=120.63 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=91.4
Q ss_pred HHHHHHHhhcCCCceEEecCc--cc-cCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023782 89 EKRLEKWFSQSPSNTIIATGF--IA-STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~--i~-~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~ 164 (277)
.+.++.+++ .+.|||.+|. ++ .++++.+.... .+++|.+|+.||.+|+|++++|+|||||||+ ||+ .|++++
T Consensus 173 ~~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~ 248 (312)
T PRK12686 173 HDTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQK 248 (312)
T ss_pred HHHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeE
Confidence 367888888 8899999876 21 23445433321 3578999999999999999999999999998 465 478999
Q ss_pred EeeeCHHHHHHHHh---hcCCcchHH--HHHHHHh--CCCcEEEEeccCC-----CCCeeEEe
Q 023782 165 LRTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIFNL-----SVPGIMIC 215 (277)
Q Consensus 165 i~~is~~e~~~l~~---~g~~v~~p~--a~~~a~~--~~i~v~I~n~~~~-----~~~GT~I~ 215 (277)
|++++.+|+.++.. ++..+|.|+ ++..+.+ .+.+++|.+..+. ...||+|.
T Consensus 249 I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~ 311 (312)
T PRK12686 249 LDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT 311 (312)
T ss_pred CCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence 99999999999875 345789996 4444443 3578888874321 13799884
No 76
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.41 E-value=8.3e-13 Score=115.12 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCCceEEecCcccc----CCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeE
Q 023782 89 EKRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI 164 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~i~~----~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~ 164 (277)
...+...+. .+.+||+.++ +. +..++..++ .+|..|+.+|..++|++++++|||||||++| +++
T Consensus 81 ~~~~~~~~~--~g~ipV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~ 148 (203)
T cd04240 81 LAELTDVLE--RGKIAILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKL 148 (203)
T ss_pred HHHHHHHHH--CCCcEEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcC
Confidence 367777777 7899999875 33 223333332 3799999999999999999999999999864 899
Q ss_pred EeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccCCC
Q 023782 165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208 (277)
Q Consensus 165 i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~~~ 208 (277)
++++++.|+.. ...+++.+.+.+.+++++++|+|+..|+
T Consensus 149 i~~i~~~e~~~-----~~~id~~~~~~~~~~gi~v~I~~g~~~~ 187 (203)
T cd04240 149 VNEIAAAELLG-----ETSVDPAFPRLLTKYGIRCYVVNGDDPE 187 (203)
T ss_pred ccccCHHHhCC-----CCeehhhHHHHHHhCCCeEEEECCCCcc
Confidence 99999987643 5677776778889999999999987663
No 77
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.38 E-value=4.4e-12 Score=116.66 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=91.3
Q ss_pred HHHHHHhhcCCCceEEecCcc---ccCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~i---~~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
+.++.+++ .+.|||++|.- ..+.+|++.++. ..+.|.+|+.||..|+|++++|+|||||||++ |+ .|+++++
T Consensus 176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i 251 (313)
T PRK12454 176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL 251 (313)
T ss_pred HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence 66778887 89999999862 144556554432 23569999999999999999999999999986 43 4789999
Q ss_pred eeeCHHHHHHHHh---hcCCcchHH--HH-HHHHhCCCcEEEEeccCC-----CCCeeEEeC
Q 023782 166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPVMRYDIPIVIRNIFNL-----SVPGIMICR 216 (277)
Q Consensus 166 ~~is~~e~~~l~~---~g~~v~~p~--a~-~~a~~~~i~v~I~n~~~~-----~~~GT~I~~ 216 (277)
++++++|+.++.. ++...|.|+ ++ +.+.+.+.+++|.+..+. ...||+|.+
T Consensus 252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~~ 313 (313)
T PRK12454 252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRIIP 313 (313)
T ss_pred cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeCC
Confidence 9999999988764 335679884 44 555555677888764321 136999853
No 78
>PRK12354 carbamate kinase; Reviewed
Probab=99.37 E-value=1.2e-11 Score=113.40 Aligned_cols=124 Identities=20% Similarity=0.179 Sum_probs=89.8
Q ss_pred HHHHHHHhhcCCCceEEecCc--cc--cCCCCCceecc-CCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe
Q 023782 89 EKRLEKWFSQSPSNTIIATGF--IA--STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV 163 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~G~--i~--~~~~G~~~~lg-rggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~ 163 (277)
.+.++.+++ .+.|||.+|. ++ .+.++...... ..++|.+|+.||..++|+.++|+|||||||++++ .|+++
T Consensus 165 ~~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k 240 (307)
T PRK12354 165 IRPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQR 240 (307)
T ss_pred HHHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCe
Confidence 478888988 7888777542 11 12223322211 3468999999999999999999999999998743 47899
Q ss_pred EEeeeCHHHHHHHHhhcCCcchHH--H-HHHHHhCCCcEEEEeccC-----CCCCeeEEeCC
Q 023782 164 ILRTLSYQEAWEMSYFGANVLHPR--T-IIPVMRYDIPIVIRNIFN-----LSVPGIMICRP 217 (277)
Q Consensus 164 ~i~~is~~e~~~l~~~g~~v~~p~--a-~~~a~~~~i~v~I~n~~~-----~~~~GT~I~~~ 217 (277)
+|++++.+|+.++ .+....|.|+ + ++.+.+.+.+++|.+..+ ....||+|.+.
T Consensus 241 ~i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~ 301 (307)
T PRK12354 241 AIAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE 301 (307)
T ss_pred ECCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence 9999999999988 5677899996 3 455555566788865321 12379999764
No 79
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.31 E-value=1.2e-11 Score=108.07 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=110.9
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP 118 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~ 118 (277)
..+.|.--...++-..|.++|+++ .++.+ |...+-+- -.+.+....+.+++. -+.|||+.- |..+
T Consensus 92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLv-T~~Di~d~-~~r~Nl~~Ti~eLL~--m~viPIvNe------NDav 156 (285)
T KOG1154|consen 92 CAAVGQSGLMALYETLFTQYGITI-----AQVLV-TRNDILDE-QQRKNLQNTISELLS--MNVIPIVNE------NDAV 156 (285)
T ss_pred HHHhCcchHHHHHHHHHHHhccch-----heeee-cCcchhhH-HHHHHHHHHHHHHHh--CCceeeecC------CCcc
Confidence 445566555677888999999985 45544 33222110 012233456677776 789999843 3322
Q ss_pred ee--ccCCC---chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHH-H-----HHhhcCCcchHH
Q 023782 119 TT--LKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-E-----MSYFGANVLHPR 187 (277)
Q Consensus 119 ~~--lgrgg---sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~-~-----l~~~g~~v~~p~ 187 (277)
.. .-+|+ +|.+|+++|..++||.++++|||||+||.+|.. ..+++++..+..+.. + -+..|.++|..+
T Consensus 157 s~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tK 235 (285)
T KOG1154|consen 157 SPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETK 235 (285)
T ss_pred CCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhh
Confidence 11 22344 799999999999999999999999999966553 457888888776554 2 234567899884
Q ss_pred --HHHHHHhCCCcEEEEeccCCCCCeeEE
Q 023782 188 --TIIPVMRYDIPIVIRNIFNLSVPGIMI 214 (277)
Q Consensus 188 --a~~~a~~~~i~v~I~n~~~~~~~GT~I 214 (277)
|+..|...|++++|.|+..|+..++.+
T Consensus 236 v~AA~~A~~~Gv~viI~~g~~p~~I~~iv 264 (285)
T KOG1154|consen 236 VKAAVNALNAGVSVIITNGDAPENITDIV 264 (285)
T ss_pred HHHHHHHhcCCceEEEeCCCChHHHHHHH
Confidence 789999999999999999887544333
No 80
>PRK09411 carbamate kinase; Reviewed
Probab=99.29 E-value=5.5e-11 Score=108.45 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=88.1
Q ss_pred HHHHHHhhcCCCceEEecCc--cc--cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 90 KRLEKWFSQSPSNTIIATGF--IA--STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~--i~--~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
+.++.+++ .+.|||.+|. ++ .+.+|...++ +.|.+|+.||.+|+|++++|+|||||||..++ .|++++|
T Consensus 167 ~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~e~vI---DkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I 239 (297)
T PRK09411 167 EAIELLLK--EGHVVICSGGGGVPVTEDGAGSEAVI---DKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAI 239 (297)
T ss_pred HHHHHHHH--CCCEEEecCCCCCCeEEcCCCeEEec---CHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCC
Confidence 78889998 7888888643 22 2233444433 57999999999999999999999999998642 5788999
Q ss_pred eeeCHHHHHHHHhhcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEEe
Q 023782 166 RTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC 215 (277)
Q Consensus 166 ~~is~~e~~~l~~~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I~ 215 (277)
++++.+|+..+.. ....|.|+ |++.+...+.+++|.+..+. ...||+|.
T Consensus 240 ~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~ 296 (297)
T PRK09411 240 RHATPDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS 296 (297)
T ss_pred CCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence 9999999987764 45678885 44666667788988763221 23699884
No 81
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.21 E-value=1.4e-10 Score=107.34 Aligned_cols=123 Identities=14% Similarity=0.141 Sum_probs=87.3
Q ss_pred HHHHHHHhhcCCCceEEec-----CccccCCCCCceeccC-CCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCC
Q 023782 89 EKRLEKWFSQSPSNTIIAT-----GFIASTPDNIPTTLKR-DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA 162 (277)
Q Consensus 89 ~~~i~~~l~~~~~~VpVv~-----G~i~~~~~G~~~~lgr-ggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a 162 (277)
.+.++.+++ .+.|+|.+ +. +.+..|+..++.- =+.|.+|+.+|.+|+|++++|+|||+|||.++|+ +++
T Consensus 176 ~~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~ 250 (316)
T PRK12352 176 APAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQ 250 (316)
T ss_pred HHHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCc
Confidence 377888887 78885554 22 2233343322100 1379999999999999999999999999987654 678
Q ss_pred eEEeeeCHHHHHHHHhhc---CCcchHH--HHHHHHhCCC-cEEEEeccCC-----CCCeeEEeC
Q 023782 163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIFNL-----SVPGIMICR 216 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i-~v~I~n~~~~-----~~~GT~I~~ 216 (277)
+++++++.+|+.++...| ...|.|+ ++..+.+.|+ +++|.+.... ...||+|..
T Consensus 251 ~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~~GT~I~~ 315 (316)
T PRK12352 251 QALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIK 315 (316)
T ss_pred ccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCCCCeEEEe
Confidence 899999999999998644 4678884 5545556665 6999874320 137898853
No 82
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.11 E-value=1.4e-09 Score=103.81 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=83.8
Q ss_pred HHHHhhcCCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCH-
Q 023782 92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY- 170 (277)
Q Consensus 92 i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~- 170 (277)
++.+++ .|.|||++++ +.+.+|++.+++ +|..|+.||.+|+|++++++|||+|||+.| .+++++++.
T Consensus 122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~ 189 (398)
T PRK04531 122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLS 189 (398)
T ss_pred HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHH
Confidence 556666 8999999986 778889988774 899999999999999999999999999643 679999996
Q ss_pred HHHHHHHhhc--CCcchHH--HHHHHHhCCCc-EEEEeccCC----------CCCeeEEeCC
Q 023782 171 QEAWEMSYFG--ANVLHPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP 217 (277)
Q Consensus 171 ~e~~~l~~~g--~~v~~p~--a~~~a~~~~i~-v~I~n~~~~----------~~~GT~I~~~ 217 (277)
+|...+...+ ..+|.|+ ++..+.+ ++| +.+.+...| +..||.|...
T Consensus 190 ~e~~~l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g 250 (398)
T PRK04531 190 TEYDHLMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRG 250 (398)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence 5777775433 3678775 4444444 343 444333333 3579999764
No 83
>PLN02825 amino-acid N-acetyltransferase
Probab=99.09 E-value=8.2e-10 Score=108.21 Aligned_cols=109 Identities=9% Similarity=0.101 Sum_probs=84.1
Q ss_pred HHHHHCCCCe----EEEccccceeecCC--------CCCC----cCCCchHHHHHHHHHhhcCCCceEEecCccccCCCC
Q 023782 53 AVVRKNGIDC----KWMDTREVLIVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN 116 (277)
Q Consensus 53 ~~L~~~Gi~a----~~l~~~~~~~~~~~--------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G 116 (277)
..|+++|+++ ..++..+-.+++.. .+|. .++|. +.|+.+++ .|.|||+++. |.+.+|
T Consensus 111 ~~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvispl-g~s~~G 183 (515)
T PLN02825 111 PNLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSNL-GYSSSG 183 (515)
T ss_pred hHHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECCc-eECCCC
Confidence 3579999998 56655443222211 2332 24554 88899998 8999999995 999999
Q ss_pred CceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHh
Q 023782 117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178 (277)
Q Consensus 117 ~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~ 178 (277)
++.|+. +|..|+.+|.+|+|++++|+||++ +++. +.+++++++.+|+.++..
T Consensus 184 e~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~ 235 (515)
T PLN02825 184 EVLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR 235 (515)
T ss_pred CEEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence 999984 999999999999999999999977 5532 357999999999998864
No 84
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.93 E-value=1.6e-09 Score=91.35 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=72.2
Q ss_pred chHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEecc
Q 023782 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205 (277)
Q Consensus 126 sD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~ 205 (277)
||..+..+|+.+++.++++.|||||||+.+|+ ++++++|+..|... |-..++|-+-.++.+++++++|.|+.
T Consensus 118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~ 189 (212)
T COG2054 118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK 189 (212)
T ss_pred ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence 69999999999999999999999999998765 58999888776643 66788998889999999999999998
Q ss_pred CCC----------CCeeEEeC
Q 023782 206 NLS----------VPGIMICR 216 (277)
Q Consensus 206 ~~~----------~~GT~I~~ 216 (277)
.|+ .+||+|.+
T Consensus 190 ~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 190 EPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred CHHHHHHHHhccccceEEEeC
Confidence 874 47888865
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.54 E-value=5.2e-07 Score=81.38 Aligned_cols=123 Identities=21% Similarity=0.275 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCceEEecCc--cccCC--CCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEE
Q 023782 90 KRLEKWFSQSPSNTIIATGF--IASTP--DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~--i~~~~--~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i 165 (277)
+.|+.+++ .|.++|..|- ++.-+ +|..-.=.-=+-|.+++.||..++||.++|+||||+||-.=- -|+-+.+
T Consensus 175 ~~Ik~L~~--~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L 250 (312)
T COG0549 175 EAIKALLE--SGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQAL 250 (312)
T ss_pred HHHHHHHh--CCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--Cccchhh
Confidence 56777887 7778877663 11111 111000000135999999999999999999999999997522 2678999
Q ss_pred eeeCHHHHHHHHh---hcCCcchHH---HHHHHHhCCCcEEEEeccCC-----CCCeeEEeC
Q 023782 166 RTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMICR 216 (277)
Q Consensus 166 ~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~I~n~~~~-----~~~GT~I~~ 216 (277)
++++.+|+..... |...-|-|+ |+..+...|=+..|.+-.+. ...||.|.+
T Consensus 251 ~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~~ 312 (312)
T COG0549 251 DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIVP 312 (312)
T ss_pred cccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEecC
Confidence 9999999988865 445788885 66777777778888765432 357998853
No 86
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=2.7e-06 Score=60.09 Aligned_cols=37 Identities=35% Similarity=0.517 Sum_probs=35.4
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|.+.+++.+++|++|+++||+++|++|
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q 37 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQ 37 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEe
Confidence 5799999999999999999999999999999999986
No 87
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=98.16 E-value=3.7e-06 Score=59.51 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=35.0
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|...||+++|+|++|+++||++.+++|
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~ 37 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD 37 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc
Confidence 4789999999999999999999999999999999875
No 88
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=98.16 E-value=3.7e-06 Score=59.11 Aligned_cols=37 Identities=38% Similarity=0.699 Sum_probs=35.3
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|.+.+++.+++|++|+++||+++|++|
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4789999999999999999999999999999999986
No 89
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=98.13 E-value=3.4e-06 Score=60.18 Aligned_cols=40 Identities=40% Similarity=0.654 Sum_probs=36.5
Q ss_pred eecCeeEEEEecCCCCC-chhHHHHHHHHHHhCCCcEEEEe
Q 023782 237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 237 ~~~nia~Isvvg~gm~~-~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.+++++|+|+|.+|.. .||+++++|+.|+++||+|.++|
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 57899999999999976 99999999999999999999986
No 90
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=98.10 E-value=6e-06 Score=59.04 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=34.1
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.||. .||+++|+|++|++.||++.|++|
T Consensus 2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~ 37 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQ 37 (66)
T ss_pred EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEe
Confidence 689999999995 899999999999999999999987
No 91
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.02 E-value=1e-05 Score=56.75 Aligned_cols=37 Identities=57% Similarity=0.924 Sum_probs=35.3
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.++...+++.+++|+.|++++|+++|++|
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q 37 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQ 37 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4799999999999999999999999999999999986
No 92
>PRK06291 aspartate kinase; Provisional
Probab=98.01 E-value=1.5e-05 Score=77.80 Aligned_cols=96 Identities=22% Similarity=0.332 Sum_probs=66.1
Q ss_pred CcchHHHHHHHHhCCCcEEEEeccCCC-CCeeEEeCCCCCC---CcchhhccCCceeeEeecCeeEEEEecCCCCCchhH
Q 023782 182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPGIMICRPPVDE---NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGT 257 (277)
Q Consensus 182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT~I~~~~~~~---~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv 257 (277)
.++..+.+..+.++||++...+....+ ...-.|.....+. .+........++.+++.+|+++|+++|.+|.+.+|+
T Consensus 335 ~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv 414 (465)
T PRK06291 335 PGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGV 414 (465)
T ss_pred ccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcCh
Confidence 345557788889999998776533222 1221222111000 000001112467899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeC
Q 023782 258 ANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 258 ~a~if~~L~~~~I~V~~isq 277 (277)
++|+|++|+++||+|.||+|
T Consensus 415 ~~rif~aL~~~~I~v~~isq 434 (465)
T PRK06291 415 AGRIFSALGESGINIKMISQ 434 (465)
T ss_pred HHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999997
No 93
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.96 E-value=1.5e-05 Score=55.94 Aligned_cols=37 Identities=38% Similarity=0.535 Sum_probs=35.2
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.++...+++.+++|+.|+++||+++|++|
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 37 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQ 37 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 4789999999999999999999999999999999986
No 94
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=1.5e-05 Score=58.47 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=34.8
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+|.+.+|.+.||+++++|+.|++++|+|+||+|
T Consensus 1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 4789999999999999999999999999999999986
No 95
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=1.8e-05 Score=58.61 Aligned_cols=37 Identities=19% Similarity=0.421 Sum_probs=35.1
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+|.+.+|.+.||+++++|+.|+++||+|+||+|
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4689999999999999999999999999999999986
No 96
>PLN02551 aspartokinase
Probab=97.91 E-value=4.3e-05 Score=75.55 Aligned_cols=94 Identities=11% Similarity=0.093 Sum_probs=64.7
Q ss_pred CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC--c--chhh---ccCCceeeEeecCeeEEEEecCCCCCc
Q 023782 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--E--DEQI---IDSPVKGFATIDNLALVNVEGTGMAGV 254 (277)
Q Consensus 182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~--~--~~~~---~~~~v~~i~~~~nia~Isvvg~gm~~~ 254 (277)
.++..+.+..+.++||++....... ....-.+........ . ..+. .-..+..+.+.+++++|+++|. |..+
T Consensus 380 ~g~~arvf~~l~~~~I~Vd~IssSe-~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~ 457 (521)
T PLN02551 380 YGFLAKVFSTFEDLGISVDVVATSE-VSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS 457 (521)
T ss_pred ccHHHHHHHHHHHcCCcEEEEeccC-CEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence 4556678889999999987765432 122222222211110 0 0000 0113567899999999999998 8889
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeC
Q 023782 255 PGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 255 ~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|+++|+|++|+++||||+||+|
T Consensus 458 ~gvaariF~aLa~~gInV~mIsq 480 (521)
T PLN02551 458 SLILEKVFRVLRTNGVNVQMISQ 480 (521)
T ss_pred ccHHHHHHHHHHHCCCCeEEEEe
Confidence 99999999999999999999997
No 97
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.91 E-value=1.9e-05 Score=56.11 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=33.0
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++|. +...+|+++|+|++|+++||+|.|++|
T Consensus 2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~ 36 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQ 36 (65)
T ss_pred cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 68999999 888899999999999999999999987
No 98
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=97.90 E-value=3.8e-05 Score=74.51 Aligned_cols=93 Identities=25% Similarity=0.248 Sum_probs=62.1
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCc---chhhc-cCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE---DEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~---~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~gv~ 258 (277)
++..+-+..+.+++|++........+ .+-.+.....+.+. ..... ......+.+++++++|+++|.||.++||++
T Consensus 322 g~~a~vf~~l~~~~i~v~~I~q~~~~-~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva 400 (447)
T COG0527 322 GFAARVFGILAEAGINVDLITQSISE-VSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA 400 (447)
T ss_pred cHHHHHHHHHHHcCCcEEEEEeccCC-CeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence 55567788889999987544322211 22222221111000 00000 011126889999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEe
Q 023782 259 NAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 259 a~if~~L~~~~I~V~~is 276 (277)
+++|++|++++|||.||+
T Consensus 401 a~~f~aL~~~~ini~~is 418 (447)
T COG0527 401 ARIFQALAEENINIIMIS 418 (447)
T ss_pred HHHHHHHHhCCCcEEEEE
Confidence 999999999999999997
No 99
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.89 E-value=3.9e-05 Score=79.74 Aligned_cols=95 Identities=20% Similarity=0.279 Sum_probs=66.5
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC--------cchhhccCCceeeEeecCeeEEEEecCCCCCc
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--------EDEQIIDSPVKGFATIDNLALVNVEGTGMAGV 254 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~--------~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~ 254 (277)
++-.+.+..+.++||++...+....+..=+...+...-.. +..+.....++.+++.+|+++|+++|.+|.+.
T Consensus 330 G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~ 409 (819)
T PRK09436 330 GMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTH 409 (819)
T ss_pred CHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccC
Confidence 4445778889999999877653322211122222211000 11111223577899999999999999999999
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeC
Q 023782 255 PGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 255 ~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|+++|+|++|++.||||.||+|
T Consensus 410 ~gv~arif~aL~~~~InI~~Isq 432 (819)
T PRK09436 410 PGIAAKFFSALGRANINIVAIAQ 432 (819)
T ss_pred cCHHHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999999997
No 100
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.87 E-value=2.4e-05 Score=57.41 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=35.1
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|++.+.+|.+.+|+++++|++|++++|+|+||+|
T Consensus 1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4689999999999999999999999999999999986
No 101
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=97.85 E-value=2.7e-05 Score=56.90 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=35.1
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++.|+|.+.+|...+|+++++|+.|+++||+|+||+|
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4689999999999999999999999999999999986
No 102
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=97.80 E-value=4.2e-05 Score=55.91 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=34.9
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|.+.+|+++++|++|++++|++++++|
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~ 37 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST 37 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc
Confidence 4789999999999999999999999999999999975
No 103
>PRK09034 aspartate kinase; Reviewed
Probab=97.73 E-value=5.5e-05 Score=73.68 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=64.6
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC----Ccchhhc-cCCceeeEeecCeeEEEEecCCCCCchhH
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE----NEDEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGT 257 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~----~~~~~~~-~~~v~~i~~~~nia~Isvvg~gm~~~~gv 257 (277)
.+-.+.+..+.++||++...+... ....-.+...+.+. ....+.. ...+.++++.+|+++|+++|.+|.+.||+
T Consensus 323 g~~a~if~~la~~~I~Vd~i~ss~-~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv 401 (454)
T PRK09034 323 GFGRKVLQILEDHGISYEHMPSGI-DDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGV 401 (454)
T ss_pred cHHHHHHHHHHHcCCeEEEEcCCC-cEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccH
Confidence 344467788899999987764221 11222222211110 0000111 12457899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeC
Q 023782 258 ANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 258 ~a~if~~L~~~~I~V~~isq 277 (277)
++|+|++|+++||||+||+|
T Consensus 402 ~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 402 AAKITKALAEANINIQMINQ 421 (454)
T ss_pred HHHHHHHHHHCCCCEEEEEe
Confidence 99999999999999999987
No 104
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=97.71 E-value=6.8e-05 Score=54.93 Aligned_cols=37 Identities=62% Similarity=0.996 Sum_probs=35.2
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|.+.+++.+++|+.|++++|+++|++|
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~ 37 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQ 37 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEe
Confidence 5789999999999999999999999999999999986
No 105
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=97.70 E-value=6.6e-05 Score=52.40 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=33.3
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.|+|.+.+|.+.+|+.+++|+.|++++|+++|++|
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec
Confidence 58999999999999999999999999999999975
No 106
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=97.69 E-value=0.00013 Score=70.64 Aligned_cols=95 Identities=22% Similarity=0.273 Sum_probs=65.4
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCC-CCeeEEeCCCCCCC---cchhhccCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLS-VPGIMICRPPVDEN---EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~-~~GT~I~~~~~~~~---~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~ 258 (277)
++-.+.+..+.+++|++.......++ ...-.|.....+.. +........++.|++.+|+++|+++|.+|.+.||++
T Consensus 316 g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~ 395 (441)
T TIGR00657 316 GFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA 395 (441)
T ss_pred cHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence 34456778889999997666422222 11212222110000 000111346788999999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeC
Q 023782 259 NAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 259 a~if~~L~~~~I~V~~isq 277 (277)
+++|++|+++||||+|++|
T Consensus 396 a~if~~La~~~Inv~~i~~ 414 (441)
T TIGR00657 396 SKIFEALAQNGINIEMISS 414 (441)
T ss_pred HHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999974
No 107
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=97.60 E-value=0.00013 Score=50.42 Aligned_cols=36 Identities=42% Similarity=0.680 Sum_probs=33.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++|.++.+.+++.+++|+.|++++|+++|++|
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 478999999999999999999999999999999975
No 108
>PRK06635 aspartate kinase; Reviewed
Probab=97.59 E-value=0.00021 Score=68.38 Aligned_cols=95 Identities=21% Similarity=0.188 Sum_probs=65.6
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCC--CeeEE-eCCCCCCCc--chhh--ccCCceeeEeecCeeEEEEecCCCCCch
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMI-CRPPVDENE--DEQI--IDSPVKGFATIDNLALVNVEGTGMAGVP 255 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~--~GT~I-~~~~~~~~~--~~~~--~~~~v~~i~~~~nia~Isvvg~gm~~~~ 255 (277)
++-.+.+..+.++||++...+...++. ..-.+ .+....... .... ....++.+++.+|+++++++|.+|.+.|
T Consensus 275 g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~ 354 (404)
T PRK06635 275 GIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP 354 (404)
T ss_pred cHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCc
Confidence 444467788899999988776654331 11122 121110000 0000 0124677999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCcEEEEeC
Q 023782 256 GTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 256 gv~a~if~~L~~~~I~V~~isq 277 (277)
|+++++|++|+++||||.++++
T Consensus 355 g~~a~i~~~La~~~Ini~~i~s 376 (404)
T PRK06635 355 GVAAKMFEALAEEGINIQMIST 376 (404)
T ss_pred hHHHHHHHHHHHCCCCEEEEEe
Confidence 9999999999999999999864
No 109
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=97.57 E-value=0.00015 Score=49.82 Aligned_cols=36 Identities=58% Similarity=0.924 Sum_probs=34.2
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++|.+|.+.+++.+++|+.|++++|++++++|
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 579999999999999999999999999999999987
No 110
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=97.56 E-value=0.0002 Score=68.45 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=63.9
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC----cchhhccCCceeeEeecCeeEEEEecCCCCCchhHH
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN----EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~----~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~ 258 (277)
++-.+.+..+.+++|++...+....+..=+.+.+...... +...........+.+++++++|+++|.+|.+.||++
T Consensus 275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~~ 354 (401)
T TIGR00656 275 GFLARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGVA 354 (401)
T ss_pred cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccHH
Confidence 4455677888999999877765432211122222211000 000000112467889999999999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEe
Q 023782 259 NAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 259 a~if~~L~~~~I~V~~is 276 (277)
+++|++|+++||||.+++
T Consensus 355 a~i~~~L~~~gIni~~i~ 372 (401)
T TIGR00656 355 SEIFSALEEKNINILMIG 372 (401)
T ss_pred HHHHHHHHHCCCcEEEEE
Confidence 999999999999999875
No 111
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=97.56 E-value=0.00017 Score=48.57 Aligned_cols=36 Identities=53% Similarity=0.792 Sum_probs=33.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++|.+|...+|+.+++|+.|++++|++++++|
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 478999999999999999999999999999999986
No 112
>PRK05925 aspartate kinase; Provisional
Probab=97.54 E-value=0.00039 Score=67.49 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=61.4
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCC-cch-hhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHH
Q 023782 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN-EDE-QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG 263 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~-~~~-~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~ 263 (277)
.+.+..+.++||++.+.++.. ....-.|........ ... ......+..+++.+|+++|+++|.||.+ +++++++|+
T Consensus 316 ~~if~~l~~~~I~vd~i~s~~-~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~~ 393 (440)
T PRK05925 316 EDVLGILRSLGIVPGLVMAQN-LGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFTE 393 (440)
T ss_pred HHHHHHHHHcCCcEEEEeccC-CEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHHH
Confidence 367788899999985553332 222222222111110 000 0011245678999999999999999997 789999999
Q ss_pred HHHhCCCcEEEEeC
Q 023782 264 AVKDVGANVIMISQ 277 (277)
Q Consensus 264 ~L~~~~I~V~~isq 277 (277)
+|++.+|||.+++|
T Consensus 394 aL~~~~Ini~~i~~ 407 (440)
T PRK05925 394 KLRGYQTPVFCWCQ 407 (440)
T ss_pred HHhhCCCCEEEEEC
Confidence 99999999999987
No 113
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.00019 Score=49.59 Aligned_cols=36 Identities=42% Similarity=0.677 Sum_probs=33.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++|.++...+++.+++|+.|++++|++++++|
T Consensus 1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc
Confidence 478999999999999999999999999999999975
No 114
>PRK09181 aspartate kinase; Validated
Probab=97.48 E-value=0.00017 Score=70.54 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=60.3
Q ss_pred CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--Ccchhhcc-CCceeeEeecCeeEEEEecCCCCCchhHH
Q 023782 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQIID-SPVKGFATIDNLALVNVEGTGMAGVPGTA 258 (277)
Q Consensus 182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--~~~~~~~~-~~v~~i~~~~nia~Isvvg~gm~~~~gv~ 258 (277)
.++..+.+..+.+++|++....... ....-.+ ....+. ....+... -....+.. +++++|++||.||. +||++
T Consensus 343 ~g~~~~if~~l~~~~i~v~~i~ss~-~sis~~v-~~~~~~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~-~~gv~ 418 (475)
T PRK09181 343 DGYDLEILEILTRHKVSYISKATNA-NTITHYL-WGSLKTLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIA-VPGVL 418 (475)
T ss_pred chHHHHHHHHHHHcCCeEEEEEecC-cEEEEEE-cCChHHHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCC-cccHH
Confidence 3455577888999999976554332 1122122 221110 00000110 11235664 99999999999995 99999
Q ss_pred HHHHHHHHhCCCcEEEEeC
Q 023782 259 NAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 259 a~if~~L~~~~I~V~~isq 277 (277)
+|+|++|+++||||.|++|
T Consensus 419 ak~f~aL~~~~Ini~~i~q 437 (475)
T PRK09181 419 AKAVQALAEAGINVLALHQ 437 (475)
T ss_pred HHHHHHHHHCCCCeEEEEe
Confidence 9999999999999999997
No 115
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.00019 Score=50.52 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=31.3
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++|.+|.+.||+++|+|++|++ ++|.+++|
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~ 35 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALED--INVRMICY 35 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEE
Confidence 589999999999999999999999975 78877775
No 116
>PRK08210 aspartate kinase I; Reviewed
Probab=97.43 E-value=0.00042 Score=66.42 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=71.8
Q ss_pred eEEeeeCHHHHHHHHh-hc---CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEee
Q 023782 163 VILRTLSYQEAWEMSY-FG---ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238 (277)
Q Consensus 163 ~~i~~is~~e~~~l~~-~g---~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~ 238 (277)
+.++.+++.+-..+.. ++ ..++..+.+..+.++||++...+... + .++................... ..+.+.
T Consensus 260 ~~v~~It~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~-~~v~~~ 336 (403)
T PRK08210 260 RLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLG-LKPSVR 336 (403)
T ss_pred CceEEEEEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhC-CcEEEe
Confidence 3566666654332222 11 13455567788999999987765542 2 2333323211000000001111 157889
Q ss_pred cCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 239 ~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|+++|+++|.+|.+.||+++|+|++|+++||+|.++++
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~ 375 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD 375 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec
Confidence 999999999999999999999999999999999998764
No 117
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.00035 Score=49.32 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=30.3
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
++|+++|.||...||+++|+|++|++.+|++.+.
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEE
Confidence 5899999999999999999999999987776554
No 118
>PRK07431 aspartate kinase; Provisional
Probab=97.31 E-value=0.00038 Score=69.89 Aligned_cols=44 Identities=36% Similarity=0.601 Sum_probs=41.7
Q ss_pred eeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 233 ~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
..+.+++++++|+++|.||..+||+++|+|++|+++||+|.+++
T Consensus 511 ~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 511 AEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred ceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 45788999999999999999999999999999999999999986
No 119
>PRK09084 aspartate kinase III; Validated
Probab=97.31 E-value=0.00091 Score=65.11 Aligned_cols=109 Identities=16% Similarity=0.198 Sum_probs=69.7
Q ss_pred EEeeeCHHHHHHHHhh------cCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--------Ccchhhcc
Q 023782 164 ILRTLSYQEAWEMSYF------GANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--------NEDEQIID 229 (277)
Q Consensus 164 ~i~~is~~e~~~l~~~------g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--------~~~~~~~~ 229 (277)
.++-+++.+-..+... +..++-.+.+..+.+++|++...+... ....-.|....... .+..+.
T Consensus 296 ~v~~it~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse-~sIs~~i~~~~~~~~~~~~~~~~l~~el-- 372 (448)
T PRK09084 296 LFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTSE-VSVSLTLDTTGSTSTGDTLLTQALLTEL-- 372 (448)
T ss_pred eeEEEEeeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccC-cEEEEEEechhhhhhhhHHHHHHHHHHH--
Confidence 4666665543333221 223455578889999999987766432 12222232221110 010111
Q ss_pred CCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 230 ~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..+..+.+++|+++|+++|.+|.++||+++|+|++|++ +||.||+|
T Consensus 373 ~~~~~i~~~~~va~IsvvG~gm~~~~gv~arif~aL~~--~nI~~I~q 418 (448)
T PRK09084 373 SQLCRVEVEEGLALVALIGNNLSKACGVAKRVFGVLEP--FNIRMICY 418 (448)
T ss_pred hcCCeEEEECCeEEEEEECCCcccCcChHHHHHHHHHh--CCeEEEEE
Confidence 13567899999999999999999999999999999986 67888876
No 120
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.29 E-value=0.00073 Score=70.21 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=64.0
Q ss_pred cchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhc--cCCceeeEeecCeeEEEEecCCCCCchhHHHH
Q 023782 183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANA 260 (277)
Q Consensus 183 v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~--~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~ 260 (277)
.+..+.+..+.+++|++...+....+ ....+.-...+.+...... ......+.+++++++|+++|.||.+++|+++|
T Consensus 332 g~~~~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~ 410 (810)
T PRK09466 332 LAQKELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHR 410 (810)
T ss_pred hHHHHHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHH
Confidence 33457788899999997776543222 2223322211100000000 01236789999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEeC
Q 023782 261 IFGAVKDVGANVIMISQ 277 (277)
Q Consensus 261 if~~L~~~~I~V~~isq 277 (277)
+|++|++++|++.+++|
T Consensus 411 ~f~aL~~~~I~ii~~~~ 427 (810)
T PRK09466 411 FYQQLKDQPVEFIWQSE 427 (810)
T ss_pred HHHHHHhCCCcEEEEeC
Confidence 99999999999988765
No 121
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.04 E-value=0.0011 Score=44.92 Aligned_cols=34 Identities=44% Similarity=0.677 Sum_probs=30.3
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+++| +.+.+|+.+++|+.|.+++|++++++|
T Consensus 1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 4678876 578899999999999999999999886
No 122
>PRK08841 aspartate kinase; Validated
Probab=96.91 E-value=0.0018 Score=62.04 Aligned_cols=83 Identities=11% Similarity=-0.003 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHH
Q 023782 186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L 265 (277)
++.+..+.+++|++....... ....+.-+..+ .. .........+.+.+|+++|+++|.+| ||+++|+|.+|
T Consensus 269 ~~i~~~l~~~~i~v~~i~~~~---~~~~~~v~~~~--~~-~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL 339 (392)
T PRK08841 269 PSLTKQCQMLGIEVWNVIEEA---DRAQIVIKQDA--CA-KLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLL 339 (392)
T ss_pred HHHHHHHHHcCCCEEEEEecC---CcEEEEECHHH--HH-HHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHH
Confidence 466777888999977664322 12222211110 00 00111233578899999999999975 99999999999
Q ss_pred HhCCCcEEEEeC
Q 023782 266 KDVGANVIMISQ 277 (277)
Q Consensus 266 ~~~~I~V~~isq 277 (277)
++++|+|.|++|
T Consensus 340 ~~~~I~i~~i~~ 351 (392)
T PRK08841 340 AQNGIDVRQCST 351 (392)
T ss_pred HhCCCCEEEEEC
Confidence 999999999986
No 123
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=96.89 E-value=0.0017 Score=45.94 Aligned_cols=35 Identities=40% Similarity=0.615 Sum_probs=31.2
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+++|+++| +.+.+|+++++|+.|+++||++++++|
T Consensus 1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 36788876 678899999999999999999999986
No 124
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=96.83 E-value=0.0023 Score=45.68 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=29.7
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
++|+|.+.- +.||+++++|+.|++++|+|+||+|
T Consensus 2 ~~vtv~~~~--~~~~~~a~if~~La~~~InvDmI~~ 35 (67)
T cd04914 2 TQIKVKAKD--NENDLQQRVFKALANAGISVDLINV 35 (67)
T ss_pred eEEEEecCC--CCccHHHHHHHHHHHcCCcEEEEEe
Confidence 678888754 5699999999999999999999975
No 125
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=96.70 E-value=0.00049 Score=64.85 Aligned_cols=96 Identities=16% Similarity=0.222 Sum_probs=63.4
Q ss_pred cCCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC------Ccc-hhhccCCceeeEeecCeeEEEEecCCCC
Q 023782 180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE------NED-EQIIDSPVKGFATIDNLALVNVEGTGMA 252 (277)
Q Consensus 180 g~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~------~~~-~~~~~~~v~~i~~~~nia~Isvvg~gm~ 252 (277)
|..++-.+.+....+.||.|-+..+..-. ..-.+.+..... +++ ...+-..+..+.+.++.++|+++|. |.
T Consensus 405 ~q~GFLAkvFti~ek~~isVDvvaTSEV~-iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq 482 (559)
T KOG0456|consen 405 GQHGFLAKVFTIFEKLGISVDVVATSEVS-ISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQ 482 (559)
T ss_pred hhhhHHHHHHHHHHHhCcEEEEEEeeeEE-EEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hh
Confidence 44555566677778888887776554311 111111111110 000 0011134556678899999999998 99
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 253 GVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
...|++.|+|..|+++||||+||||
T Consensus 483 ~ss~i~~rmF~~l~e~giNvqMISQ 507 (559)
T KOG0456|consen 483 NSSGILERMFCVLAENGINVQMISQ 507 (559)
T ss_pred hhhHHHHHHHHHHHhcCcceeeecc
Confidence 9999999999999999999999999
No 126
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=96.65 E-value=0.0068 Score=63.69 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=60.0
Q ss_pred CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCC--Ccchhh---ccCCceeeEeecCeeEEEEecCCCCCchh
Q 023782 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQI---IDSPVKGFATIDNLALVNVEGTGMAGVPG 256 (277)
Q Consensus 182 ~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~--~~~~~~---~~~~v~~i~~~~nia~Isvvg~gm~~~~g 256 (277)
..+..+.+..+.+++|++...+... ... |......... +...+. .-..+..+.+.+++++|+++|.||.+++|
T Consensus 336 ~g~~a~if~~la~~~I~Vd~I~sse-~si-s~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g 413 (861)
T PRK08961 336 VGFLADVFTLFKKHGLSVDLISSSE-TNV-TVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH 413 (861)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEcCC-CEE-EEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence 4566678889999999987765432 111 2222221100 000000 01124567899999999999999999999
Q ss_pred HHHHHHHHHHhCCCcEEEEeC
Q 023782 257 TANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 257 v~a~if~~L~~~~I~V~~isq 277 (277)
+++|+|++|++.+| .|++|
T Consensus 414 v~arif~aL~~~~I--~~i~~ 432 (861)
T PRK08961 414 KLGPAWATFGAERV--HLISQ 432 (861)
T ss_pred hHHHHHHHHhhcCe--EEEEC
Confidence 99999999998654 55554
No 127
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=96.28 E-value=0.0078 Score=58.46 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=84.5
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccccce--eecCC--------CCCC----cCCCchHHHHHHHHHhhcCCCceEEe
Q 023782 41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIA 106 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~--~~~~~--------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv 106 (277)
-+||. ..-+...|+++|-.+++.++.... .++.+ .|+. ..++ .++++.+++ .|.+|++
T Consensus 170 ~~~E~--n~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd----~d~i~~l~~--~G~mp~L 241 (520)
T KOG2436|consen 170 VSLEA--NLNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVD----VDRIRHLLD--AGSMPLL 241 (520)
T ss_pred chhhh--hhHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceec----hhhhhhhhh--CCCchhe
Confidence 46777 444888999999998888766322 11211 2221 2343 378888887 8899999
Q ss_pred cCccccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHH
Q 023782 107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176 (277)
Q Consensus 107 ~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l 176 (277)
... +.+..|+++|+. +|..|..+|..|+|+.++.++|+ |..-. .+.+.++.++.+|...+
T Consensus 242 ~sl-a~TaSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~ 301 (520)
T KOG2436|consen 242 RSL-AATASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAG 301 (520)
T ss_pred hhh-cccCccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhh
Confidence 885 889999999884 89999999999999999999997 44322 34556677766655554
No 128
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=95.86 E-value=0.0099 Score=44.94 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=32.0
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..++|+|.|. ++||+.+.++++|+++|+||.=|||
T Consensus 2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQ 36 (90)
T COG3830 2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQ 36 (90)
T ss_pred ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHH
Confidence 4689999996 6999999999999999999998887
No 129
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=95.43 E-value=0.036 Score=40.22 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=31.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
..|.|.+.+|.+.+|+.+++|+.|+++++++.+..
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~ 36 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKD 36 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999999999999999998754
No 130
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=94.94 E-value=0.017 Score=39.88 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=24.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+.++||+++++++.|+++||||..+.|
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~ 33 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQ 33 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence 558999999999999999999998864
No 131
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.59 E-value=0.17 Score=36.48 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=27.7
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|++.|. ++||+.+++.+.|+++|+||.=++|
T Consensus 1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~ 32 (75)
T cd04870 1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQ 32 (75)
T ss_pred CEEEEcC---CCCCHHHHHHHHHHHCCCCEEeccc
Confidence 3788885 6999999999999999999986654
No 132
>PRK00194 hypothetical protein; Validated
Probab=91.25 E-value=0.34 Score=36.05 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=29.4
Q ss_pred eeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 241 ia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
...+++.|. ++||+++++.+.|+++|+||.-++|
T Consensus 3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~ 36 (90)
T PRK00194 3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQ 36 (90)
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhh
Confidence 357888886 5999999999999999999987764
No 133
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=90.94 E-value=0.43 Score=34.74 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.4
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|++.|. ++||+.+++.+.|+++|.||.-++|
T Consensus 3 iltv~g~---Dr~GiVa~vs~~la~~g~nI~d~~q 34 (77)
T cd04893 3 VISALGT---DRPGILNELTRAVSESGCNILDSRM 34 (77)
T ss_pred EEEEEeC---CCChHHHHHHHHHHHcCCCEEEcee
Confidence 5788886 6999999999999999999987765
No 134
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.86 E-value=0.28 Score=34.87 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=26.1
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+.+.. .++||.++++++.|+++|++|.+++|
T Consensus 3 l~i~~---~d~~g~l~~I~~~la~~~inI~~i~~ 33 (76)
T cd04888 3 LSLLL---EHRPGVLSKVLNTIAQVRGNVLTINQ 33 (76)
T ss_pred EEEEe---cCCCchHHHHHHHHHHcCCCEEEEEe
Confidence 44554 35799999999999999999999875
No 135
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=90.79 E-value=0.32 Score=35.27 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=26.4
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
.+|++.|. ++||+.++++++|+++|.||.=+.|
T Consensus 3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~ 35 (76)
T PF13740_consen 3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQ 35 (76)
T ss_dssp EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEE
T ss_pred EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEE
Confidence 57899996 6999999999999999999876654
No 136
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.93 E-value=0.36 Score=35.48 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=30.4
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.|++....|....||..|+++.|+++||+++.+
T Consensus 2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred ceEehhHhhccchhcHHHHHHHHHHHcCCCEeee
Confidence 4567778889999999999999999999999876
No 137
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.79 E-value=0.52 Score=35.03 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=28.8
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..|++.|. ++||+++++.+.|+++|+||.-++|
T Consensus 2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~ 34 (88)
T cd04872 2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQ 34 (88)
T ss_pred EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechh
Confidence 46788886 5999999999999999999987765
No 138
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.29 E-value=0.63 Score=33.27 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=27.6
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|++.|. ++||+++++.+.|+++|+||.-++|
T Consensus 1 ii~v~g~---D~~Giv~~it~~l~~~g~nI~~~~~ 32 (74)
T cd04875 1 ILTLSCP---DRPGIVAAVSGFLAEHGGNIVESDQ 32 (74)
T ss_pred CEEEEcC---CCCCHHHHHHHHHHHcCCCEEeeee
Confidence 3678875 6999999999999999999987654
No 139
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=88.25 E-value=0.95 Score=31.58 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++.+.|+++||||.-+
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i 32 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRAL 32 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEE
Confidence 5689999999999999999999643
No 140
>PRK04435 hypothetical protein; Provisional
Probab=86.37 E-value=1.2 Score=36.83 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=30.8
Q ss_pred ecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 238 ~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
....+.|.+.. .+.||+++++++.|+++|+||..|+|
T Consensus 66 ~~r~vtL~i~l---~Dr~GlLs~Il~~IA~~~aNIltI~q 102 (147)
T PRK04435 66 KGKIITLSLLL---EDRSGTLSKVLNVIAEAGGNILTINQ 102 (147)
T ss_pred CCcEEEEEEEE---ecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence 44556677764 46899999999999999999999986
No 141
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=84.39 E-value=5.9 Score=35.83 Aligned_cols=68 Identities=24% Similarity=0.289 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|..+|++...... +-+ +.+...+.++.+.+ .-.+.|++|-+|.+.|
T Consensus 22 Na~~la~~L~~~G~~v~~~~~-----VgD--------~~~~I~~~l~~a~~--r~D~vI~tGGLGPT~D----------- 75 (255)
T COG1058 22 NAAFLADELTELGVDLARITT-----VGD--------NPDRIVEALREASE--RADVVITTGGLGPTHD----------- 75 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEe-----cCC--------CHHHHHHHHHHHHh--CCCEEEECCCcCCCcc-----------
Confidence 467899999999999866432 111 23344566777766 4678888887887766
Q ss_pred hHHHHHHHHHhCcc
Q 023782 127 DFSAAIMGALLRAH 140 (277)
Q Consensus 127 D~~A~~lA~~l~A~ 140 (277)
|.|+-.+|++||-+
T Consensus 76 DiT~e~vAka~g~~ 89 (255)
T COG1058 76 DLTAEAVAKALGRP 89 (255)
T ss_pred HhHHHHHHHHhCCC
Confidence 99999999999954
No 142
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=82.67 E-value=1.7 Score=29.05 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++++.|.++|+||.-+
T Consensus 5 ~~d~~G~l~~i~~~l~~~~inI~~~ 29 (56)
T cd04889 5 VENKPGRLAEVTEILAEAGINIKAI 29 (56)
T ss_pred eCCCCChHHHHHHHHHHcCCCEeeE
Confidence 4578999999999999999998644
No 143
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=81.95 E-value=2.5 Score=30.36 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
|++.|. ++||+++++.+.|+++|+||.-++|
T Consensus 2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~ 32 (81)
T cd04869 2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLST 32 (81)
T ss_pred EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEe
Confidence 567775 5999999999999999999986653
No 144
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.62 E-value=0.86 Score=31.08 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.3
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.++||.++++++.|+++|+||..+
T Consensus 6 ~~d~pG~L~~i~~~l~~~~~nI~~i 30 (65)
T cd04882 6 VPDKPGGLHEILQILSEEGINIEYM 30 (65)
T ss_pred eCCCCcHHHHHHHHHHHCCCChhhe
Confidence 5589999999999999999998654
No 145
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=80.19 E-value=2.8 Score=26.05 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.1
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 253 GVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+.+|..+++++.|+++++++..+.+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~ 31 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQ 31 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEe
Confidence 4789999999999999999987753
No 146
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=79.56 E-value=0.86 Score=33.87 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.4
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+|++.|..+ ++|.++++-+.|+++|+||+-|+|
T Consensus 1 ivtvlg~~~--~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPL--TAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcC--CHHHHHHHHHHHHHcCCCHHHHHH
Confidence 378888643 789999999999999999976654
No 147
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.35 E-value=38 Score=32.67 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=25.7
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
|+++|.+ ++.++..++..|.++...++.
T Consensus 156 IiG~G~I--G~~vA~~~~~fGm~V~~~d~~ 183 (409)
T PRK11790 156 IVGYGHI--GTQLSVLAESLGMRVYFYDIE 183 (409)
T ss_pred EECCCHH--HHHHHHHHHHCCCEEEEECCC
Confidence 8899999 999999999999999998864
No 148
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.61 E-value=2.4 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.510 Sum_probs=23.2
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.++||.++++...|+++|+||.-+.
T Consensus 6 ~~d~pG~L~~l~~~i~~~g~nI~~i~ 31 (72)
T cd04884 6 LEDKPGTLKPVVDTLREFNARIISIL 31 (72)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEEE
Confidence 56899999999999999999997654
No 149
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=77.35 E-value=5.2 Score=32.05 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHhCCCcEEEEeccCCCCCee--EEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCCCchhHHHHHHH
Q 023782 186 PRTIIPVMRYDIPIVIRNIFNLSVPGI--MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG 263 (277)
Q Consensus 186 p~a~~~a~~~~i~v~I~n~~~~~~~GT--~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~ 263 (277)
..++..+.++||+++-++..+-..-|. .|.+++.. .. ..-.-++.+++- =.|.+..|.+.||-+.+|.+
T Consensus 18 ~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~---A~--~~Lee~gF~Vr~----~dVlaVEmeD~PG~l~~I~~ 88 (142)
T COG4747 18 ASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE---AH--SVLEEAGFTVRE----TDVLAVEMEDVPGGLSRIAE 88 (142)
T ss_pred HHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH---HH--HHHHHCCcEEEe----eeEEEEEecCCCCcHHHHHH
Confidence 356677889999998887766544552 22232210 00 000112222221 12455558899999999999
Q ss_pred HHHhCCCcEEEE
Q 023782 264 AVKDVGANVIMI 275 (277)
Q Consensus 264 ~L~~~~I~V~~i 275 (277)
+|.+++||++-|
T Consensus 89 vl~d~diNldYi 100 (142)
T COG4747 89 VLGDADINLDYI 100 (142)
T ss_pred HHhhcCcCceee
Confidence 999999998754
No 150
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=76.75 E-value=63 Score=30.10 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=69.9
Q ss_pred ccCCCCCcee--cc--CCCchHHHHHHHHHhCcceEE-EeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcch
Q 023782 111 ASTPDNIPTT--LK--RDGSDFSAAIMGALLRAHQVT-IWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185 (277)
Q Consensus 111 ~~~~~G~~~~--lg--rggsD~~A~~lA~~l~A~~l~-i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~ 185 (277)
+.|+.|.... +| .||+...|-.+|..|||.-++ =.||+.|++.-| ..-. ..|..+-.
T Consensus 83 vvDe~G~~vIsLLsGH~GGAN~LA~~iA~~lga~pVITTAtd~~g~~avD----------------~la~--~~g~~i~~ 144 (315)
T PRK05788 83 VVDEKGKFVISLLSGHHGGANELARDLAKILGAVPVITTATDVNGKAAVD----------------TIAK--QLNAKIVN 144 (315)
T ss_pred EEeCCCCEEEEcccCCcccHHHHHHHHHHHhCCEEEEeCCccccCCccHH----------------HHHH--hcCCEecC
Confidence 4567776432 33 588999999999999998643 456888887533 1111 12444433
Q ss_pred HH---HHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceeeEeecCeeEEEEecCCCC---CchhHHH
Q 023782 186 PR---TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMA---GVPGTAN 259 (277)
Q Consensus 186 p~---a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~nia~Isvvg~gm~---~~~gv~a 259 (277)
++ .+..++-.|=++.+..- +..+..+....... .......+.+.... -++|.|.. ....+..
T Consensus 145 ~~~~k~i~a~ll~g~~v~~~~~---~~~~~i~i~~~~~~------~~~~~~~l~l~P~~---l~vGIGcrrg~~~e~i~~ 212 (315)
T PRK05788 145 RESTKKVNAALVNGEKVGLWGD---ELDPVIRVSLRNDV------PELPKVTVKLRPKN---VVLGIGCRKGVSAEEIAE 212 (315)
T ss_pred HHHHHHHHHHHHCCCceEEEcc---CCCceEEEeccccc------cCCCCceEEEecCe---EEEeeccCCCCCHHHHHH
Confidence 43 23334444555555421 11222222221100 00011123444333 34555554 4455788
Q ss_pred HHHHHHHhCCCcEE
Q 023782 260 AIFGAVKDVGANVI 273 (277)
Q Consensus 260 ~if~~L~~~~I~V~ 273 (277)
.+-++|+++|+...
T Consensus 213 ai~~~L~~~~i~~~ 226 (315)
T PRK05788 213 AVERALEALNIDPR 226 (315)
T ss_pred HHHHHHHHcCCCHH
Confidence 88899999998643
No 151
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=76.51 E-value=7.6 Score=31.03 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=42.0
Q ss_pred CCceeeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 230 ~~v~~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+....|..+++-..+++.|.=--+-+|+++.+.+.|+++||.|-.+|
T Consensus 52 ~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 52 RVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred cCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 55677899999999999998666899999999999999999998776
No 152
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.48 E-value=4.5 Score=29.00 Aligned_cols=30 Identities=27% Similarity=0.566 Sum_probs=26.2
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
++|+|.+. ++||..+++.++|+++|+||..
T Consensus 1 t~~~v~~~---Dr~gLl~~i~~~l~~~~lnI~~ 30 (74)
T cd04925 1 TAIELTGT---DRPGLLSEVFAVLADLHCNVVE 30 (74)
T ss_pred CEEEEEEC---CCCCHHHHHHHHHHHCCCcEEE
Confidence 36778876 6999999999999999999875
No 153
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.45 E-value=3.4 Score=28.68 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++.+.|+++|++|.-+
T Consensus 8 ~~d~~G~L~~l~~~l~~~~i~i~~~ 32 (69)
T cd04909 8 VPDEPGVIAEVTQILGDAGISIKNI 32 (69)
T ss_pred cCCCCCHHHHHHHHHHHcCCCceee
Confidence 5689999999999999999998754
No 154
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.27 E-value=6.6 Score=28.45 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.9
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
++|.|.. .++||.++++.++|.+.|++|...
T Consensus 2 Tviev~a---~DRpGLL~~i~~~l~~~gl~I~~A 32 (72)
T cd04895 2 TLVKVDS---ARKPGILLEAVQVLTDLDLCITKA 32 (72)
T ss_pred EEEEEEE---CCcCCHHHHHHHHHHHCCcEEEEE
Confidence 4566765 479999999999999999998753
No 155
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=74.18 E-value=3.9 Score=29.06 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.+.||.++++++.|+++|+|+..|
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I 30 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKI 30 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999998876
No 156
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=74.03 E-value=3.7 Score=30.11 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.++||+++|+...|++.|.||+-++
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~ 34 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLN 34 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEE
Confidence 3789999999999999999998764
No 157
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.53 E-value=6.5 Score=27.30 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++.+.|+++|+||.-+
T Consensus 8 ~~d~pG~l~~i~~~l~~~~inI~~i 32 (72)
T cd04883 8 VPDRPGQLADIAAIFKDRGVNIVSV 32 (72)
T ss_pred ECCCCCHHHHHHHHHHHcCCCEEEE
Confidence 5689999999999999999999754
No 158
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=72.35 E-value=35 Score=31.81 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCe-EEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcC--CCceEEecCccc
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDC-KWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS--PSNTIIATGFIA 111 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a-~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~--~~~VpVv~G~i~ 111 (277)
.+|..-..||-+|+++++..|...|.+- ..+|...-.+ .+ |.+..++.......+.+++... .....|+.++.|
T Consensus 97 RQDk~~~~repIsaklvA~lL~~aG~drv~TvDlH~~qi--qg-fFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD~G 173 (314)
T COG0462 97 RQDKAFKPREPISAKLVANLLETAGADRVLTVDLHAPQI--QG-FFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKG 173 (314)
T ss_pred ccCcccCCCCCEeHHHHHHHHHHcCCCeEEEEcCCchhh--cc-cCCCccccccchHHHHHHHHHhcCCCCcEEECCCcc
Confidence 3455557899999999999999999963 3344443211 11 2122223222334555555422 113556655432
Q ss_pred cCCCCCceeccCCCchHHHHHHHHHhCcceEEEeec
Q 023782 112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (277)
Q Consensus 112 ~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tD 147 (277)
| =.-|-.+|..|+++--+|-+.
T Consensus 174 ----g----------v~RAr~~A~~L~~~~a~i~K~ 195 (314)
T COG0462 174 ----G----------VKRARALADRLGAPLAIIDKR 195 (314)
T ss_pred ----H----------HHHHHHHHHHhCCCEEEEEEe
Confidence 2 334888999999885555553
No 159
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=72.29 E-value=4.5 Score=29.23 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=21.6
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++++.|+++|||+.-+
T Consensus 8 ~~d~~G~L~~il~~f~~~~ini~~i 32 (80)
T cd04905 8 LPNKPGALYDVLGVFAERGINLTKI 32 (80)
T ss_pred ECCCCCHHHHHHHHHHHCCcCEEEE
Confidence 3468999999999999999998654
No 160
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=71.99 E-value=31 Score=29.00 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|++.|+++.... ++.+ +.+...+.++++++ ...+.|++|-.+.+.
T Consensus 19 ~n~~~l~~~L~~~G~~v~~~~-----~v~D--------d~~~I~~~l~~~~~--~~dlVIttGG~G~t~----------- 72 (170)
T cd00885 19 TNAAFLAKELAELGIEVYRVT-----VVGD--------DEDRIAEALRRASE--RADLVITTGGLGPTH----------- 72 (170)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EeCC--------CHHHHHHHHHHHHh--CCCEEEECCCCCCCC-----------
Confidence 356788999999999864421 2222 22334466666665 557888877555333
Q ss_pred chHHHHHHHHHhCcc
Q 023782 126 SDFSAAIMGALLRAH 140 (277)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (277)
-|.+.-.++.+++-+
T Consensus 73 ~D~t~ea~~~~~~~~ 87 (170)
T cd00885 73 DDLTREAVAKAFGRP 87 (170)
T ss_pred CChHHHHHHHHhCCC
Confidence 399999999999853
No 161
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.88 E-value=9 Score=26.40 Aligned_cols=30 Identities=13% Similarity=0.317 Sum_probs=25.0
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.|.|.+. ++||+++++.+.|++++++|.-+
T Consensus 2 ~l~v~~~---d~~gll~~i~~~l~~~~~~I~~~ 31 (70)
T cd04899 2 VLELTAL---DRPGLLADVTRVLAELGLNIHSA 31 (70)
T ss_pred EEEEEEc---CCccHHHHHHHHHHHCCCeEEEE
Confidence 5667654 69999999999999999998643
No 162
>PRK03673 hypothetical protein; Provisional
Probab=71.78 E-value=23 Score=34.16 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|.+.|+++.... ++.+ +.+...+.++..++ ...+.|++|-++.+.+
T Consensus 22 N~~~la~~L~~~G~~v~~~~-----~v~D--------~~~~i~~~l~~a~~--~~DlVI~tGGlGpt~d----------- 75 (396)
T PRK03673 22 NAAWLADFFFHQGLPLSRRN-----TVGD--------NLDALVAILRERSQ--HADVLIVNGGLGPTSD----------- 75 (396)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----EcCC--------CHHHHHHHHHHHhc--cCCEEEEcCCCCCCCc-----------
Confidence 67788999999999865532 2222 23334456666554 5678888886665543
Q ss_pred hHHHHHHHHHhCcc
Q 023782 127 DFSAAIMGALLRAH 140 (277)
Q Consensus 127 D~~A~~lA~~l~A~ 140 (277)
|.+.-.+|+++|-.
T Consensus 76 D~t~~avA~a~g~~ 89 (396)
T PRK03673 76 DLSALAAATAAGEG 89 (396)
T ss_pred ccHHHHHHHHcCCC
Confidence 88899999999953
No 163
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.76 E-value=4.9 Score=27.42 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=22.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.+.||.++++++.|+++|++|.-+
T Consensus 5 ~~d~~G~L~~i~~~i~~~~~nI~~i 29 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEV 29 (73)
T ss_pred eCCCCChHHHHHHHHHHcCCCEEEE
Confidence 3579999999999999999998754
No 164
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=71.11 E-value=7.8 Score=27.82 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=24.9
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.|.|.+ .++||++++|.+++++.|+||..++
T Consensus 7 ~~l~i~~---~dr~GlL~dI~~~i~~~~~nI~~i~ 38 (80)
T PF13291_consen 7 VRLRIEA---EDRPGLLADITSVISENGVNIRSIN 38 (80)
T ss_dssp EEEEEEE---E--TTHHHHHHHHHHCSSSEEEEEE
T ss_pred EEEEEEE---EcCCCHHHHHHHHHHHCCCCeEEEE
Confidence 3456665 3689999999999999999998765
No 165
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.40 E-value=9.1 Score=27.17 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
+.++||.++++.++|+++|+||..
T Consensus 8 ~~D~~Gll~~i~~~l~~~~lnI~s 31 (72)
T cd04926 8 TEDRVGLLSDVTRVFRENGLTVTR 31 (72)
T ss_pred ECCccCHHHHHHHHHHHCCcEEEE
Confidence 347999999999999999999864
No 166
>PRK03670 competence damage-inducible protein A; Provisional
Probab=70.09 E-value=26 Score=31.62 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|.+.|+++.... ++.+ +.+...+.+++++. ....+.|++|-++.+.+
T Consensus 20 tN~~~la~~L~~~G~~v~~~~-----iV~D--------d~~~I~~~l~~a~~-~~~DlVIttGGlGpt~d---------- 75 (252)
T PRK03670 20 SNSAFIAQKLTEKGYWVRRIT-----TVGD--------DVEEIKSVVLEILS-RKPEVLVISGGLGPTHD---------- 75 (252)
T ss_pred hhHHHHHHHHHHCCCEEEEEE-----EcCC--------CHHHHHHHHHHHhh-CCCCEEEECCCccCCCC----------
Confidence 356788999999999865432 2222 23334455666554 13478888886665554
Q ss_pred chHHHHHHHHHhCcc
Q 023782 126 SDFSAAIMGALLRAH 140 (277)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (277)
|.+.-.+|++++-+
T Consensus 76 -D~T~eava~a~g~~ 89 (252)
T PRK03670 76 -DVTMLAVAEALGRE 89 (252)
T ss_pred -CchHHHHHHHhCCC
Confidence 88888888888843
No 167
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=69.70 E-value=5.1 Score=30.00 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.+.||+++|+...|++.|.||+-++
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLt 34 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLH 34 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEE
Confidence 3789999999999999999998765
No 168
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=68.68 E-value=5.4 Score=29.26 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.+.||+++|+...+++.|.||+-++
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~ 35 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMN 35 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEE
Confidence 4789999999999999999998765
No 169
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=68.64 E-value=10 Score=28.43 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=24.4
Q ss_pred HHHHHHhhcCCCceEEecCccccCCCCCcee--cc--CCCchHHHHHHHHHhCcceE
Q 023782 90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LK--RDGSDFSAAIMGALLRAHQV 142 (277)
Q Consensus 90 ~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~--lg--rggsD~~A~~lA~~l~A~~l 142 (277)
..+..++......=+| ++.|++|.... +| +||++..|-.+|..||+.-+
T Consensus 26 R~iap~l~dK~~DPaV----vvvde~g~~vIplL~GH~GGan~lA~~iA~~lga~~V 78 (84)
T PF11760_consen 26 RAIAPLLKDKDTDPAV----VVVDEDGRFVIPLLGGHRGGANELARQIAELLGAQPV 78 (84)
T ss_dssp HHHHHH---TTT--EE----EEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-EE-
T ss_pred HHhChhhcccCCCCCE----EEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCCEEE
Confidence 3444555422223334 35577776432 43 78899999999999999644
No 170
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.63 E-value=9 Score=27.97 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.6
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
++.|.. .++||.++++..+|.+.|++|..
T Consensus 2 vlev~a---~DRpGLL~~i~~~l~~~~l~i~~ 30 (75)
T cd04896 2 LLQIRC---VDQKGLLYDILRTSKDCNIQISY 30 (75)
T ss_pred EEEEEe---CCcccHHHHHHHHHHHCCeEEEE
Confidence 455664 47999999999999999999875
No 171
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=68.19 E-value=12 Score=25.47 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=24.5
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.|.|.+ .++||.++++..+|++++++|..+
T Consensus 2 ~l~i~~---~d~~g~l~~i~~~l~~~~~~I~~~ 31 (70)
T cd04873 2 VVEVYA---PDRPGLLADITRVLADLGLNIHDA 31 (70)
T ss_pred EEEEEe---CCCCCHHHHHHHHHHHCCCeEEEE
Confidence 355654 469999999999999999998654
No 172
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.51 E-value=12 Score=26.59 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=24.9
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
.|.|.+. ++||..+++..+|+..|++|..
T Consensus 3 ~i~v~~~---Dr~gLl~~i~~~l~~~~l~I~~ 31 (73)
T cd04900 3 EVFIYTP---DRPGLFARIAGALDQLGLNILD 31 (73)
T ss_pred EEEEEec---CCCCHHHHHHHHHHHCCCCeEE
Confidence 4666654 7999999999999999999875
No 173
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=66.53 E-value=6.3 Score=30.29 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=25.9
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
..|++.- .+.||+++|+...|++.|.||+-++
T Consensus 9 ~tisvlv---~N~pGVL~RIaglFsRRgyNIeSLt 40 (96)
T PRK08178 9 VILELTV---RNHPGVMSHVCGLFARRAFNVEGIL 40 (96)
T ss_pred EEEEEEE---ECCcCHHHHHHHHHhcCCcCeeeEE
Confidence 3455553 3799999999999999999998764
No 174
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=66.24 E-value=40 Score=27.07 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+.+.|++.|+...... ++.+ |.+...+.+++.++ +..+.|+.|-.+.+.
T Consensus 17 ~n~~~l~~~l~~~G~~v~~~~-----~v~D--------d~~~i~~~l~~~~~--~~D~VittGG~g~~~----------- 70 (144)
T PF00994_consen 17 SNGPFLAALLEELGIEVIRYG-----IVPD--------DPDAIKEALRRALD--RADLVITTGGTGPGP----------- 70 (144)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE-----EEES--------SHHHHHHHHHHHHH--TTSEEEEESSSSSST-----------
T ss_pred hHHHHHHHHHHHcCCeeeEEE-----EECC--------CHHHHHHHHHhhhc--cCCEEEEcCCcCccc-----------
Confidence 467789999999999765432 2232 34445566776666 567888877544332
Q ss_pred chHHHHHHHHHhCc
Q 023782 126 SDFSAAIMGALLRA 139 (277)
Q Consensus 126 sD~~A~~lA~~l~A 139 (277)
.|++.-.++++.+-
T Consensus 71 ~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 71 DDVTPEALAEAGGR 84 (144)
T ss_dssp TCHHHHHHHHHSSE
T ss_pred CCcccHHHHHhcCc
Confidence 38888888887763
No 175
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.48 E-value=7.6 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.++||.++++...|+++|+++..+.
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~ 31 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMR 31 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeE
Confidence 4789999999999999999987653
No 176
>PRK01215 competence damage-inducible protein A; Provisional
Probab=63.86 E-value=39 Score=30.64 Aligned_cols=69 Identities=17% Similarity=0.202 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|.+.|+++.... ++.+ |.+...+.++++++ ...+.|++|-.+.+.+
T Consensus 23 tn~~~l~~~L~~~G~~v~~~~-----~v~D--------d~~~I~~~l~~a~~--~~DlVIttGG~g~t~d---------- 77 (264)
T PRK01215 23 TNASWIARRLTYLGYTVRRIT-----VVMD--------DIEEIVSAFREAID--RADVVVSTGGLGPTYD---------- 77 (264)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHHhc--CCCEEEEeCCCcCChh----------
Confidence 457789999999999865532 2222 23334566666665 5578888885554433
Q ss_pred chHHHHHHHHHhCcc
Q 023782 126 SDFSAAIMGALLRAH 140 (277)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (277)
|.+.-.+|.+++-+
T Consensus 78 -D~t~eaia~~~g~~ 91 (264)
T PRK01215 78 -DKTNEGFAKALGVE 91 (264)
T ss_pred -hhHHHHHHHHhCCC
Confidence 88888889888844
No 177
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=63.63 E-value=8.9 Score=25.98 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.++||.++++...|+++++++..+.
T Consensus 8 ~d~~g~l~~i~~~l~~~~~~i~~~~ 32 (72)
T cd04878 8 ENEPGVLNRISGLFARRGFNIESLT 32 (72)
T ss_pred cCCCcHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999999999999998764
No 178
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.56 E-value=9.1 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=22.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.+.+|.++++...|+++++++.-+.
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~ 32 (72)
T cd04874 7 AEDKPGVLRDLTGVIAEHGGNITYTQ 32 (72)
T ss_pred eCCCCChHHHHHHHHHhCCCCEEEEE
Confidence 34789999999999999999987553
No 179
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.38 E-value=12 Score=27.08 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=24.7
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
++.|.+. ++||..+++..+|+++|++|..
T Consensus 2 ~~ei~~~---Dr~gLfa~i~~~l~~~~l~I~~ 30 (76)
T cd04927 2 LLKLFCS---DRKGLLHDVTEVLYELELTIER 30 (76)
T ss_pred EEEEEEC---CCCCHHHHHHHHHHHCCCeEEE
Confidence 4666654 6999999999999999999875
No 180
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=61.67 E-value=6.8 Score=27.13 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
+.+.||.++++.+.|+++|+||..
T Consensus 6 ~~d~~G~l~~i~~~l~~~~inI~~ 29 (73)
T cd04902 6 NTDRPGVIGKVGTILGEAGINIAG 29 (73)
T ss_pred eCCCCCHHHHHHHHHHHcCcChhh
Confidence 357899999999999999999853
No 181
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=60.50 E-value=17 Score=26.48 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=25.7
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
++|.|.+ .++||.+.++..+|.+.|++|..
T Consensus 2 TvveV~~---~DRpGLL~~i~~~l~~~~l~I~~ 31 (75)
T cd04897 2 SVVTVQC---RDRPKLLFDVVCTLTDMDYVVFH 31 (75)
T ss_pred EEEEEEe---CCcCcHHHHHHHHHHhCCeEEEE
Confidence 4667776 47999999999999999999875
No 182
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=60.26 E-value=74 Score=25.69 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++.++.+.|++.|+++.... ++.+ +.+...+.++++++ ...+.|+.|-.+. |..
T Consensus 28 n~~~l~~~l~~~G~~v~~~~-----~v~D--------d~~~i~~~l~~~~~--~~DliIttGG~g~-----------g~~ 81 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLG-----IVPD--------DPEEIREILRKAVD--EADVVLTTGGTGV-----------GPR 81 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEe-----ecCC--------CHHHHHHHHHHHHh--CCCEEEECCCCCC-----------CCC
Confidence 46688899999998865432 2222 22334455666654 5678888774332 234
Q ss_pred hHHHHHHHHHh
Q 023782 127 DFSAAIMGALL 137 (277)
Q Consensus 127 D~~A~~lA~~l 137 (277)
|++...++.+.
T Consensus 82 D~t~~ai~~~g 92 (144)
T TIGR00177 82 DVTPEALEELG 92 (144)
T ss_pred ccHHHHHHHhC
Confidence 88888888876
No 183
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=59.42 E-value=10 Score=26.46 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=20.3
Q ss_pred CchhHHHHHHHHHHhCCCcEEEEe
Q 023782 253 GVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.||++.|+...|++.|.||.-++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~ 24 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLS 24 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEE
Confidence 479999999999999999997654
No 184
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=59.07 E-value=12 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=26.1
Q ss_pred eEEEEecCCCCCchhHHHHHHHHHHhCCCcEE
Q 023782 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273 (277)
Q Consensus 242 a~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~ 273 (277)
..++++|. ++||+.+++.+.|+++||||.
T Consensus 96 ~~v~v~G~---DrPGIV~~vT~~la~~~iNI~ 124 (190)
T PRK11589 96 VWVQVEVA---DSPHLIERFTALFDSHHMNIA 124 (190)
T ss_pred EEEEEEEC---CCCCHHHHHHHHHHHcCCChh
Confidence 57889986 699999999999999999975
No 185
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=58.60 E-value=13 Score=25.02 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
..+.+|.++++...|++++++|.-+
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~ 30 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAM 30 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeE
Confidence 3478999999999999999998654
No 186
>PRK00549 competence damage-inducible protein A; Provisional
Probab=56.79 E-value=56 Score=31.57 Aligned_cols=69 Identities=26% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++..+++.|++.|+++.... ++.+ +.+...+.++...+ ...+.|++|-++.+.+
T Consensus 20 tN~~~L~~~L~~~G~~v~~~~-----~v~D--------d~~~I~~~l~~a~~--~~DlVItTGGlGpt~d---------- 74 (414)
T PRK00549 20 TNAQFLSEKLAELGIDVYHQT-----VVGD--------NPERLLSALEIAEE--RSDLIITTGGLGPTKD---------- 74 (414)
T ss_pred hhHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHhcc--CCCEEEECCCCCCCCC----------
Confidence 356788999999999875532 2222 22233455555443 5578888886665544
Q ss_pred chHHHHHHHHHhCcc
Q 023782 126 SDFSAAIMGALLRAH 140 (277)
Q Consensus 126 sD~~A~~lA~~l~A~ 140 (277)
|.+.-.+|.+++.+
T Consensus 75 -D~t~ea~a~~~g~~ 88 (414)
T PRK00549 75 -DLTKETVAKFLGRE 88 (414)
T ss_pred -ccHHHHHHHHhCCC
Confidence 77788888877753
No 187
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=55.72 E-value=24 Score=29.74 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=26.2
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+...|.+.-. -...||+.+.++..++++||+|..+
T Consensus 92 G~gViei~~~-~~~~pgi~A~V~~~iak~gi~Irqi 126 (167)
T COG2150 92 GLGVIEIYPE-DARYPGILAGVASLIAKRGISIRQI 126 (167)
T ss_pred CCeEEEEEec-cCCCccHHHHHHHHHHHcCceEEEE
Confidence 3344454432 2468999999999999999998765
No 188
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.16 E-value=15 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.+++|.++++...|+++++++.-+.
T Consensus 8 ~d~~g~l~~i~~~l~~~~i~I~~~~ 32 (79)
T cd04881 8 KDKPGVLAKITGILAEHGISIESVI 32 (79)
T ss_pred CCCCcHHHHHHHHHHHcCCCeEEEE
Confidence 4789999999999999999987664
No 189
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.04 E-value=18 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.0
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
.++||.++++.+++++.|+||.-+.
T Consensus 7 ~d~~g~L~~i~~~i~~~~~nI~~v~ 31 (74)
T cd04887 7 PNRPGMLGRVTTAIGEAGGDIGAID 31 (74)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEE
Confidence 4799999999999999999987543
No 190
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=52.57 E-value=24 Score=24.95 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=24.4
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
|.|.+. +++|+++.+...+++.|+|+..+.
T Consensus 3 l~I~~~---dr~Gll~dI~~~i~~~~~nI~~~~ 32 (74)
T cd04877 3 LEITCE---DRLGITQEVLDLLVEHNIDLRGIE 32 (74)
T ss_pred EEEEEE---ccchHHHHHHHHHHHCCCceEEEE
Confidence 345543 689999999999999999987664
No 191
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=51.75 E-value=87 Score=30.34 Aligned_cols=67 Identities=18% Similarity=0.202 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++..+++.|++.|+.+.... ++.+ |.+...+.++++++ ...+.|++|-++.+.+
T Consensus 21 N~~~l~~~L~~~G~~v~~~~-----~v~D--------d~~~i~~~l~~a~~--~~DlVIttGGlgpt~d----------- 74 (413)
T TIGR00200 21 NAQWLADFLAHQGLPLSRRT-----TVGD--------NPERLKTIIRIASE--RADVLIFNGGLGPTSD----------- 74 (413)
T ss_pred hHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHHhc--CCCEEEEcCCCCCCCc-----------
Confidence 46688899999999865532 2222 23334455666654 5678888886665544
Q ss_pred hHHHHHHHHHhCc
Q 023782 127 DFSAAIMGALLRA 139 (277)
Q Consensus 127 D~~A~~lA~~l~A 139 (277)
|.+.-.+|.++|-
T Consensus 75 D~t~eava~~~g~ 87 (413)
T TIGR00200 75 DLTAETIATAKGE 87 (413)
T ss_pred ccHHHHHHHHhCC
Confidence 7777778777664
No 192
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=51.39 E-value=61 Score=24.47 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=41.2
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP 118 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~ 118 (277)
++++|+. ++.++..|.+.+.+.+.++. |. +.++++.+ .+ ++++.|...
T Consensus 3 I~G~g~~--~~~i~~~L~~~~~~vvvid~----------------d~----~~~~~~~~--~~-~~~i~gd~~------- 50 (116)
T PF02254_consen 3 IIGYGRI--GREIAEQLKEGGIDVVVIDR----------------DP----ERVEELRE--EG-VEVIYGDAT------- 50 (116)
T ss_dssp EES-SHH--HHHHHHHHHHTTSEEEEEES----------------SH----HHHHHHHH--TT-SEEEES-TT-------
T ss_pred EEcCCHH--HHHHHHHHHhCCCEEEEEEC----------------Cc----HHHHHHHh--cc-cccccccch-------
Confidence 5788887 99999999997756554432 21 44555554 44 677777521
Q ss_pred eeccCCCchHHHHHHHHHhCcceEEEeec
Q 023782 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTD 147 (277)
Q Consensus 119 ~~lgrggsD~~A~~lA~~l~A~~l~i~tD 147 (277)
|.-...-|..-+|+.++++|+
T Consensus 51 --------~~~~l~~a~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 51 --------DPEVLERAGIEKADAVVILTD 71 (116)
T ss_dssp --------SHHHHHHTTGGCESEEEEESS
T ss_pred --------hhhHHhhcCccccCEEEEccC
Confidence 333444445556777777765
No 193
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=51.25 E-value=14 Score=31.16 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=29.7
Q ss_pred EeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHHhCCCcEEEEeccC
Q 023782 144 IWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206 (277)
Q Consensus 144 i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~I~n~~~ 206 (277)
+.+||||++|+ .+++-.=.-+|.. -..+.+=..++..+++||.+-|..+.+
T Consensus 11 li~DVDGvLTD-------G~ly~~~~Gee~K-----aFnv~DG~Gik~l~~~Gi~vAIITGr~ 61 (170)
T COG1778 11 LILDVDGVLTD-------GKLYYDENGEEIK-----AFNVRDGHGIKLLLKSGIKVAIITGRD 61 (170)
T ss_pred EEEeccceeec-------CeEEEcCCCceee-----eeeccCcHHHHHHHHcCCeEEEEeCCC
Confidence 56899999984 3333221112211 123444456777888888877777664
No 194
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=50.75 E-value=21 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
...||-++++++.|+++|||+.-|
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~I 31 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHI 31 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEE
Confidence 357999999999999999998755
No 195
>PRK08577 hypothetical protein; Provisional
Probab=48.51 E-value=35 Score=27.38 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=28.2
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.+.|.+... +.||+++++.+.|+++++++.-++
T Consensus 55 ~~~~I~V~~~---Dr~GvLa~I~~~l~~~~inI~~i~ 88 (136)
T PRK08577 55 KLVEIELVVE---DRPGVLAKITGLLAEHGVDILATE 88 (136)
T ss_pred cEEEEEEEEc---CCCCHHHHHHHHHHHCCCCEEEEE
Confidence 4667888854 689999999999999999987543
No 196
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=48.21 E-value=1.1e+02 Score=25.54 Aligned_cols=70 Identities=21% Similarity=0.273 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCC
Q 023782 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (277)
Q Consensus 45 ~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrg 124 (277)
--++..+++.|++.|+.+..+ .++.+ |.+...+.++++++.....+.|++|-.+.+
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~-----~iv~D--------d~~~i~~~l~~~~~~~~~DlVIttGGtg~g----------- 76 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADR-----AIVKD--------DIYQIRAQVSAWIADPDVQVILITGGTGFT----------- 76 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCcCCC-----------
Confidence 345668888999999875443 22232 233445666666532246788888754432
Q ss_pred CchHHHHHHHHHhC
Q 023782 125 GSDFSAAIMGALLR 138 (277)
Q Consensus 125 gsD~~A~~lA~~l~ 138 (277)
.-|++.-.++..++
T Consensus 77 ~~D~t~eal~~l~~ 90 (163)
T TIGR02667 77 GRDVTPEALEPLFD 90 (163)
T ss_pred CCCCcHHHHHHHHC
Confidence 23887888877765
No 197
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=48.12 E-value=1.2e+02 Score=24.02 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCC
Q 023782 45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD 124 (277)
Q Consensus 45 ~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrg 124 (277)
--++..+.+.|++.|....... ++.+ |.+...+.++++++ ...+.|+.|-.+.+
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~-----~v~D--------d~~~I~~~l~~~~~--~~dliittGG~g~g----------- 70 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVPD--------DKEAIKEALREALE--RADLVITTGGTGPG----------- 70 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEE-----EeCC--------CHHHHHHHHHHHHh--CCCEEEEcCCCCCC-----------
Confidence 3456788999999998865432 1122 23344566666665 45777777743322
Q ss_pred CchHHHHHHHHHhCc
Q 023782 125 GSDFSAAIMGALLRA 139 (277)
Q Consensus 125 gsD~~A~~lA~~l~A 139 (277)
-.|++-..++..++.
T Consensus 71 ~~D~t~~~l~~~~~~ 85 (135)
T smart00852 71 PDDVTPEAVAEALGK 85 (135)
T ss_pred CCcCcHHHHHHHhCC
Confidence 238888888888773
No 198
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=46.91 E-value=1.4e+02 Score=23.58 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-++.++.+.|++.|.+.... .++.+ +.+...+.++++++ ...+.|+.|-.+.+.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~-----~~v~D--------d~~~i~~~i~~~~~--~~DlvittGG~g~g~----------- 72 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYA-----GVVPD--------DADSIRAALIEASR--EADLVLTTGGTGVGR----------- 72 (133)
T ss_pred chHHHHHHHHHHCCCEEEEe-----eecCC--------CHHHHHHHHHHHHh--cCCEEEECCCCCCCC-----------
Confidence 35678888999999775432 12222 23344566777765 467888877544332
Q ss_pred chHHHHHHHHHh
Q 023782 126 SDFSAAIMGALL 137 (277)
Q Consensus 126 sD~~A~~lA~~l 137 (277)
-|.+...++...
T Consensus 73 ~D~t~~ai~~~g 84 (133)
T cd00758 73 RDVTPEALAELG 84 (133)
T ss_pred CcchHHHHHHhc
Confidence 388888888765
No 199
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=46.76 E-value=29 Score=34.62 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=24.5
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
++++|.+ ++.++..|+..|.+....++.
T Consensus 143 IiG~G~I--G~~vA~~l~~fG~~V~~~d~~ 170 (525)
T TIGR01327 143 VIGLGRI--GSIVAKRAKAFGMKVLAYDPY 170 (525)
T ss_pred EECCCHH--HHHHHHHHHhCCCEEEEECCC
Confidence 7889998 999999999999998888763
No 200
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=46.52 E-value=1e+02 Score=23.62 Aligned_cols=78 Identities=12% Similarity=0.017 Sum_probs=40.2
Q ss_pred CCceeccCCCchHHHHHHHHHhCc--ceEEEeeccccccccCCCCCCCCeEEeeeCHHHHHHHHhhcCCcchHHHHHHHH
Q 023782 116 NIPTTLKRDGSDFSAAIMGALLRA--HQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193 (277)
Q Consensus 116 G~~~~lgrggsD~~A~~lA~~l~A--~~l~i~tDV~Gvyt~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~ 193 (277)
|.+..+|+|+|...|..++..+.. ..+.++.|...++..-....++. .+=-+ +..|..----++++.|+
T Consensus 1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d-~vi~i--------S~sG~t~~~~~~~~~a~ 71 (128)
T cd05014 1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGD-VVIAI--------SNSGETDELLNLLPHLK 71 (128)
T ss_pred CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCC-EEEEE--------eCCCCCHHHHHHHHHHH
Confidence 346678889999999999888752 23444444332221111111111 11111 11222221234788899
Q ss_pred hCCCcEEEE
Q 023782 194 RYDIPIVIR 202 (277)
Q Consensus 194 ~~~i~v~I~ 202 (277)
+.|+|+...
T Consensus 72 ~~g~~vi~i 80 (128)
T cd05014 72 RRGAPIIAI 80 (128)
T ss_pred HCCCeEEEE
Confidence 999996554
No 201
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=46.51 E-value=15 Score=25.10 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.4
Q ss_pred CCCchhHHHHHHHHHHhCCCcEE
Q 023782 251 MAGVPGTANAIFGAVKDVGANVI 273 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~ 273 (277)
..++||.++++.+.|+++|+|+.
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~ 28 (69)
T cd04901 6 HKNVPGVLGQINTILAEHNINIA 28 (69)
T ss_pred ecCCCcHHHHHHHHHHHcCCCHH
Confidence 34789999999999999999974
No 202
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=46.07 E-value=44 Score=33.32 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=24.0
Q ss_pred HhhhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023782 39 VVGHGELWSAQMLAAVVRKNGIDCKWMDT 67 (277)
Q Consensus 39 v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~ 67 (277)
++++|.+ ++.++..|+..|.++...++
T Consensus 145 IiG~G~I--G~~vA~~l~~fG~~V~~~d~ 171 (526)
T PRK13581 145 IIGLGRI--GSEVAKRAKAFGMKVIAYDP 171 (526)
T ss_pred EECCCHH--HHHHHHHHHhCCCEEEEECC
Confidence 7789998 99999999999999888876
No 203
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.81 E-value=29 Score=26.09 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
...||-+.++++.|+++|||+.-|
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~I 45 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHI 45 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEE
Confidence 357999999999999999998765
No 204
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=44.57 E-value=32 Score=24.83 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
...||-++++++.|+++|||+.-|
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~I 31 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHI 31 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEE
Confidence 357999999999999999998765
No 205
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=42.94 E-value=1.5e+02 Score=24.03 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++.++.+.|++.|.++... .++.+ |.+...+.+++.++.....+.|+.|-.+.+. -
T Consensus 21 n~~~l~~~l~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~~~~~~~~DlVittGG~s~g~-----------~ 76 (152)
T cd00886 21 SGPALVELLEEAGHEVVAY-----EIVPD--------DKDEIREALIEWADEDGVDLILTTGGTGLAP-----------R 76 (152)
T ss_pred hHHHHHHHHHHcCCeeeeE-----EEcCC--------CHHHHHHHHHHHHhcCCCCEEEECCCcCCCC-----------C
Confidence 4667889999999875432 12222 2333445565555411357888877544333 3
Q ss_pred hHHHHHHHHHhC
Q 023782 127 DFSAAIMGALLR 138 (277)
Q Consensus 127 D~~A~~lA~~l~ 138 (277)
|++...++..++
T Consensus 77 D~t~~al~~~~~ 88 (152)
T cd00886 77 DVTPEATRPLLD 88 (152)
T ss_pred cCcHHHHHHHhC
Confidence 787888887764
No 206
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.31 E-value=26 Score=25.01 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 244 Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
|.|.. .++||..+++..+|+..|.||.-
T Consensus 4 I~V~~---~Dr~gLFa~iag~L~~~~LnI~~ 31 (68)
T cd04928 4 ITFAA---GDKPKLLSQLSSLLGDLGLNIAE 31 (68)
T ss_pred EEEEE---CCCcchHHHHHHHHHHCCCceEE
Confidence 45554 47999999999999999999864
No 207
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=41.14 E-value=1e+02 Score=29.82 Aligned_cols=72 Identities=25% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
+...+++.|++.|.....+ .+..+ |.+...+.+++.++ ..++.|+.|-.. . |..
T Consensus 204 N~~~l~a~l~~~G~e~~~~-----giv~D--------d~~~l~~~i~~a~~--~~DviItsGG~S---------v--G~~ 257 (404)
T COG0303 204 NSYMLAALLERAGGEVVDL-----GIVPD--------DPEALREAIEKALS--EADVIITSGGVS---------V--GDA 257 (404)
T ss_pred CHHHHHHHHHHcCCceeec-----cccCC--------CHHHHHHHHHHhhh--cCCEEEEeCCcc---------C--cch
Confidence 3568889999999875432 22222 45556677777776 568888887322 2 345
Q ss_pred hHHHHHHHHHhCcceEEEee
Q 023782 127 DFSAAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~t 146 (277)
|++-..+...+| ++.||.
T Consensus 258 D~v~~~l~~~lG--~v~~~g 275 (404)
T COG0303 258 DYVKAALERELG--EVLFHG 275 (404)
T ss_pred HhHHHHHHhcCC--cEEEEe
Confidence 999999888888 677775
No 208
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=40.71 E-value=40 Score=32.28 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=40.4
Q ss_pred CCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhc-CCCceEEecCccccCCCCCceeccCCCchHHHHHHHHHhC
Q 023782 60 IDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLR 138 (277)
Q Consensus 60 i~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~-~~~~VpVv~G~i~~~~~G~~~~lgrggsD~~A~~lA~~l~ 138 (277)
.|+.-++-+-.--..+++||...- +-+-|.+..+- ..|+..||.|| |. .||| .+..++.+|
T Consensus 171 fPai~VNDs~tK~~FDNrYGtgqS----~~DgI~RaTn~liaGK~vVV~GY------G~---vGrG-----~A~~~rg~G 232 (420)
T COG0499 171 FPAINVNDSVTKSLFDNRYGTGQS----LLDGILRATNVLLAGKNVVVAGY------GW---VGRG-----IAMRLRGMG 232 (420)
T ss_pred cceEeecchhhhcccccccccchh----HHHHHHhhhceeecCceEEEecc------cc---cchH-----HHHHhhcCC
Confidence 466666544332223445553211 11333332211 36889999987 43 5778 778889999
Q ss_pred cceEEEeeccc
Q 023782 139 AHQVTIWTDVD 149 (277)
Q Consensus 139 A~~l~i~tDV~ 149 (277)
|+ ++.|+||
T Consensus 233 A~--ViVtEvD 241 (420)
T COG0499 233 AR--VIVTEVD 241 (420)
T ss_pred Ce--EEEEecC
Confidence 97 6777776
No 209
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=40.20 E-value=23 Score=29.76 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=9.9
Q ss_pred EeeccccccccC
Q 023782 144 IWTDVDGVYSAD 155 (277)
Q Consensus 144 i~tDV~Gvyt~d 155 (277)
+.+|+|||+|+.
T Consensus 10 ~v~d~dGv~tdg 21 (169)
T TIGR02726 10 VILDVDGVMTDG 21 (169)
T ss_pred EEEeCceeeECC
Confidence 668999999864
No 210
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=39.95 E-value=46 Score=22.49 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=20.5
Q ss_pred HHHHHHhCcceEEEeeccccc--cccCCCC
Q 023782 131 AIMGALLRAHQVTIWTDVDGV--YSADPRK 158 (277)
Q Consensus 131 ~~lA~~l~A~~l~i~tDV~Gv--yt~dP~~ 158 (277)
.+++...-+..+.-|+|-+|. |++.|-.
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~~ 33 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPPP 33 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCCC
Confidence 344445555689999999996 8888764
No 211
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.75 E-value=32 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEe
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMIS 276 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~is 276 (277)
+.++||-+.++++.+++ +.||.-+.
T Consensus 5 ipdkPG~l~~~~~~i~~-~~nI~~~~ 29 (68)
T cd04885 5 FPERPGALKKFLELLGP-PRNITEFH 29 (68)
T ss_pred CCCCCCHHHHHHHHhCC-CCcEEEEE
Confidence 56899999999999998 88887654
No 212
>PRK08198 threonine dehydratase; Provisional
Probab=38.13 E-value=49 Score=31.57 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=32.1
Q ss_pred EeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 236 ~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
........++|. +.++||.++++++.++++|+||.-|+|
T Consensus 322 ~~~gr~~~l~v~---l~D~PG~L~~ll~~i~~~g~NI~~i~~ 360 (404)
T PRK08198 322 VAAGRYLKLRVR---LPDRPGQLAKLLSIIAELGANVIDVDH 360 (404)
T ss_pred hhcCCEEEEEEE---eCCCCCHHHHHHHHHhhCCCceEEEEE
Confidence 445666777776 678999999999999999999986654
No 213
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=38.13 E-value=37 Score=21.90 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.+.||..+++.+.|+++++++.-+
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~ 29 (71)
T cd04876 6 IDRPGLLADITTVIAEEKINILSV 29 (71)
T ss_pred eccCcHHHHHHHHHHhCCCCEEEE
Confidence 367999999999999999998654
No 214
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=38.09 E-value=33 Score=28.01 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.9
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
+.++.|.+++++.++++.++||.-|.|
T Consensus 79 ledr~G~LS~vLd~iA~~~~nvLTI~Q 105 (150)
T COG4492 79 LEDRVGILSDVLDVIAREEINVLTIHQ 105 (150)
T ss_pred EhhhhhhHHHHHHHHHHhCCcEEEEec
Confidence 457899999999999999999999988
No 215
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.91 E-value=39 Score=26.64 Aligned_cols=24 Identities=8% Similarity=0.057 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
...||-++++++.|+++|||+.-|
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~I 72 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHL 72 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEE
Confidence 357999999999999999998765
No 216
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.40 E-value=3.3e+02 Score=25.06 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=25.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeE-EEcccc
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCK-WMDTRE 69 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~-~l~~~~ 69 (277)
+|.....||.+|++.++..|...|++.+ .+|...
T Consensus 83 QDr~~~~~e~isak~va~lL~~~g~d~vitvD~H~ 117 (304)
T PRK03092 83 QDKKHRGREPISARLVADLFKTAGADRIMTVDLHT 117 (304)
T ss_pred cccccCCCCCccHHHHHHHHHhcCCCeEEEEecCh
Confidence 4555567999999999999999998643 345443
No 217
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=35.23 E-value=40 Score=29.27 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHHhCCCcEEEE
Q 023782 252 AGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 252 ~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
.++||+++++-..|.+++|||-.+
T Consensus 156 ~D~PG~Ig~vg~~Lg~~~iNIa~m 179 (208)
T TIGR00719 156 NDKFGTIAGVANLLAGFEINIEHL 179 (208)
T ss_pred CCCCChHHHHHHHHHhCCccEEEE
Confidence 579999999999999999999654
No 218
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=35.03 E-value=49 Score=22.39 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=21.0
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEcc
Q 023782 41 GHGELWSAQMLAAVVRKNGIDCKWMDT 67 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~ 67 (277)
.+.+. |.+++..|+..||+++.+.+
T Consensus 8 ~C~~~--a~l~~~llr~~GIpar~v~g 32 (68)
T smart00460 8 TCGEF--AALFVALLRSLGIPARVVSG 32 (68)
T ss_pred eeHHH--HHHHHHHHHHCCCCeEEEee
Confidence 35666 88999999999999998754
No 219
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=33.13 E-value=38 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=20.4
Q ss_pred hhcHHHHHHHHHHHHHHCCCCeEEEccc
Q 023782 41 GHGELWSAQMLAAVVRKNGIDCKWMDTR 68 (277)
Q Consensus 41 s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~ 68 (277)
.|.+. +.++++.|+..||+|..+.+.
T Consensus 53 ~C~~~--a~l~~allr~~Gipar~v~g~ 78 (113)
T PF01841_consen 53 DCEDY--ASLFVALLRALGIPARVVSGY 78 (113)
T ss_dssp SHHHH--HHHHHHHHHHHT--EEEEEEE
T ss_pred ccHHH--HHHHHHHHhhCCCceEEEEEE
Confidence 47787 999999999999999988653
No 220
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=32.76 E-value=2.1e+02 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=22.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHCCCCeEEEc
Q 023782 37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66 (277)
Q Consensus 37 ~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~ 66 (277)
-.++++|.. ++.++..|.++|++.+.+|
T Consensus 403 vII~G~Gr~--G~~va~~L~~~g~~vvvID 430 (601)
T PRK03659 403 VIIVGFGRF--GQVIGRLLMANKMRITVLE 430 (601)
T ss_pred EEEecCchH--HHHHHHHHHhCCCCEEEEE
Confidence 345778887 9999999999999976654
No 221
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=32.13 E-value=15 Score=28.68 Aligned_cols=30 Identities=20% Similarity=0.415 Sum_probs=24.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHCCCCeEEEcccc
Q 023782 38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69 (277)
Q Consensus 38 ~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~ 69 (277)
.|+..||. +.-+...+++.|++++.+++..
T Consensus 6 LIanrGei--a~r~~ra~r~~Gi~tv~v~s~~ 35 (110)
T PF00289_consen 6 LIANRGEI--AVRIIRALRELGIETVAVNSNP 35 (110)
T ss_dssp EESS-HHH--HHHHHHHHHHTTSEEEEEEEGG
T ss_pred EEECCCHH--HHHHHHHHHHhCCcceeccCch
Confidence 36678998 8889999999999999997654
No 222
>PTZ00445 p36-lilke protein; Provisional
Probab=31.64 E-value=3.3e+02 Score=24.12 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHCCCCeEEEccccc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREV 70 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~ 70 (277)
++..++..|++.||+++..|--.-
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnT 53 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLT 53 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhh
Confidence 488999999999999999876443
No 223
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=30.05 E-value=55 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=26.8
Q ss_pred EEEEecCCCCCc---hhHHHHHHHHHHhCCCcEEEE
Q 023782 243 LVNVEGTGMAGV---PGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 243 ~Isvvg~gm~~~---~gv~a~if~~L~~~~I~V~~i 275 (277)
.|+++|..|.+. .+|+.++...|.+.||+....
T Consensus 105 ~IsLvGC~l~~~~~~~~fa~~f~~~L~~~gi~~~V~ 140 (157)
T PF11713_consen 105 KISLVGCSLADNNKQESFALQFAQALKKQGINASVS 140 (157)
T ss_dssp EEEEESSS-S-TTGGGSHHHHHHHHHHHHHHCEEEE
T ss_pred EEEEEEecccCCcccccHHHHHHHHHHhcCCcceEE
Confidence 678999988765 899999999999999977654
No 224
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.53 E-value=3e+02 Score=25.28 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCc
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF 109 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~ 109 (277)
-+-+++.|.+.|++...+.+..- .+ .....++-.+.++...+...+.+||+.|-
T Consensus 27 ~~~lv~~li~~Gv~gi~~~GttG------E~--~~Ls~eEr~~v~~~~v~~~~grvpviaG~ 80 (299)
T COG0329 27 LRRLVEFLIAAGVDGLVVLGTTG------ES--PTLTLEERKEVLEAVVEAVGGRVPVIAGV 80 (299)
T ss_pred HHHHHHHHHHcCCCEEEECCCCc------cc--hhcCHHHHHHHHHHHHHHHCCCCcEEEec
Confidence 45677888999999877755321 11 12233344455555555557899999884
No 225
>PRK11898 prephenate dehydratase; Provisional
Probab=28.35 E-value=3.6e+02 Score=24.55 Aligned_cols=102 Identities=13% Similarity=0.078 Sum_probs=54.2
Q ss_pred CCCeEEeeeCHHHHHHHHhhcC----CcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCceee
Q 023782 160 SEAVILRTLSYQEAWEMSYFGA----NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGF 235 (277)
Q Consensus 160 ~~a~~i~~is~~e~~~l~~~g~----~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~i 235 (277)
|+.+.+..-|..+|.++...+. ..+-++ ..|..+|.++.-.|..+...-=|++.--.... ..+..
T Consensus 122 p~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~--~aa~~ygL~il~~~I~d~~~N~TRF~vi~~~~------~~~~~--- 190 (283)
T PRK11898 122 PGAELEPANSTAAAAQYVAEHPDEPIAAIASE--LAAELYGLEILAEDIQDYPNNRTRFWLLGRKK------PPPPL--- 190 (283)
T ss_pred CCCEEEEcCchHHHHHHHhcCCCCCeEEECCH--HHHHHcCCcEehhcCCCCCccceEEEEEEcCc------ccCCC---
Confidence 5677888778888877764331 122221 23455677777666554333345543111000 00000
Q ss_pred EeecCeeEEEEecCCCC-CchhHHHHHHHHHHhCCCcEEEE
Q 023782 236 ATIDNLALVNVEGTGMA-GVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 236 ~~~~nia~Isvvg~gm~-~~~gv~a~if~~L~~~~I~V~~i 275 (277)
....+ +.+++= .+. ..||-+.++++.|+++|||+.-|
T Consensus 191 ~~~~~--ktslif-~l~~~~pGsL~~~L~~F~~~~INLt~I 228 (283)
T PRK11898 191 RTGGD--KTSLVL-TLPNNLPGALYKALSEFAWRGINLTRI 228 (283)
T ss_pred CCCCC--eEEEEE-EeCCCCccHHHHHHHHHHHCCCCeeeE
Confidence 01122 223221 122 35999999999999999998654
No 226
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=28.21 E-value=96 Score=32.86 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=30.0
Q ss_pred cCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 239 ~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
++.+.+.|.+. ++||++++|.++|.+.|++|...
T Consensus 777 ~~~t~~~v~~~---DrpGll~~i~~~l~~~~~~i~~a 810 (850)
T TIGR01693 777 RKATIMEVRAL---DRPGLLARVGRTLEELGLSIQSA 810 (850)
T ss_pred CCeEEEEEEEC---CccHHHHHHHHHHHHCCCeEEEE
Confidence 46889999985 69999999999999999998754
No 227
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=28.18 E-value=3.2e+02 Score=25.10 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=52.5
Q ss_pred CCCeEEeeeCHHHHHHHHhhc-----CCcchHHHHHHHHhCCCcEEEEeccCCCCCeeEEeCCCCCCCcchhhccCCcee
Q 023782 160 SEAVILRTLSYQEAWEMSYFG-----ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKG 234 (277)
Q Consensus 160 ~~a~~i~~is~~e~~~l~~~g-----~~v~~p~a~~~a~~~~i~v~I~n~~~~~~~GT~I~~~~~~~~~~~~~~~~~v~~ 234 (277)
|+++.+..=|-.+|.+++..+ +-+-.+.| |..+|.++...|..+.+.--|++.--... .......
T Consensus 121 p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~a---A~~YgL~il~~~I~D~~~N~TRF~vl~r~-------~~~~~~~ 190 (279)
T COG0077 121 PGVEIEYTSSTAEAAKLVAEGPDETVAAIASELA---AELYGLDILAENIEDEPNNRTRFLVLSRR-------KPPSVSD 190 (279)
T ss_pred CCceEEEcCCHHHHHHHHHhCCCcCeeEEcCHHH---HHHcCcHhHhhcccCCCCCeEEEEEEecc-------CCCCcCC
Confidence 345666666667777766432 12333333 34456666555555433344555321100 0001111
Q ss_pred eEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 235 i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
....+.+-+. +.+.||-+.+++..|+.+|||...|
T Consensus 191 ---~~~kTsl~f~---~~n~PGaL~~~L~~Fa~~gINlTkI 225 (279)
T COG0077 191 ---GPEKTSLIFS---VPNKPGALYKALGVFAKRGINLTKI 225 (279)
T ss_pred ---CCceEEEEEE---cCCCCchHHHHHHHHHHcCcceeeE
Confidence 0112222222 3389999999999999999997654
No 228
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.74 E-value=1.5e+02 Score=27.37 Aligned_cols=92 Identities=17% Similarity=0.076 Sum_probs=50.6
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCeE-EEccccceeecCCCCCCcCCCchHHHHHHHHHhhcC-CCceEEecCcccc
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCK-WMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PSNTIIATGFIAS 112 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~-~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~-~~~VpVv~G~i~~ 112 (277)
.+|.....||.+|++.++..|...|.+.+ .+|+..-.+ .+-| +..++.......+.+++... -....|++.
T Consensus 93 RQDr~~~~ge~isak~~a~lL~~~g~d~vitvD~H~~~~--~~~f-~~p~~~l~~~~~l~~~i~~~~~~~~vvv~p---- 165 (309)
T PRK01259 93 RQDRKARSRVPITAKLVANLLETAGADRVLTMDLHADQI--QGFF-DIPVDNLYGSPILLEDIKQKNLENLVVVSP---- 165 (309)
T ss_pred hhhhhhccCCCchHHHHHHHHhhcCCCEEEEEcCChHHH--cCcC-CCCceeeeecHHHHHHHHhcCCCCcEEEEE----
Confidence 35666668999999999999999998644 345554211 1112 21122111123334444211 122233322
Q ss_pred CCCCCceeccCCCchHHHHHHHHHhCcceEE
Q 023782 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVT 143 (277)
Q Consensus 113 ~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~ 143 (277)
+. |+-..|..+|..|+.....
T Consensus 166 d~----------Gg~~~A~~la~~Lg~~~~~ 186 (309)
T PRK01259 166 DV----------GGVVRARALAKRLDADLAI 186 (309)
T ss_pred CC----------CcHHHHHHHHHHhCCCEEE
Confidence 21 2466689999999976554
No 229
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.64 E-value=1.5e+02 Score=27.25 Aligned_cols=80 Identities=11% Similarity=-0.022 Sum_probs=46.5
Q ss_pred HHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCch
Q 023782 48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD 127 (277)
Q Consensus 48 ~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggsD 127 (277)
-+.+++.|.+.|+....+.+..- .+ .....++-.+.++...+...+.+||+.|- +. ..|- |
T Consensus 31 l~~lv~~li~~Gv~Gi~v~GstG------E~--~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv-~~-----~~t~-----~ 91 (309)
T cd00952 31 TARLVERLIAAGVDGILTMGTFG------EC--ATLTWEEKQAFVATVVETVAGRVPVFVGA-TT-----LNTR-----D 91 (309)
T ss_pred HHHHHHHHHHcCCCEEEECcccc------cc--hhCCHHHHHHHHHHHHHHhCCCCCEEEEe-cc-----CCHH-----H
Confidence 35567777889999877755321 11 12233344455565655557789999873 21 1110 2
Q ss_pred HH-HHHHHHHhCcceEEEee
Q 023782 128 FS-AAIMGALLRAHQVTIWT 146 (277)
Q Consensus 128 ~~-A~~lA~~l~A~~l~i~t 146 (277)
.. .+..|..+||+.+.+..
T Consensus 92 ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 92 TIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHHhCCCEEEECC
Confidence 22 34567778998777765
No 230
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=27.56 E-value=3.8e+02 Score=25.94 Aligned_cols=113 Identities=10% Similarity=0.007 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHH
Q 023782 15 FIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK 94 (277)
Q Consensus 15 ~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~ 94 (277)
.++.|.+.|.+.+......+-..+++-++--....++...|++.|+++..++...- +.+....+..+ ..+.+.+
T Consensus 155 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~~~~~~ll~~lG~~v~~i~~~~d-----g~~~~~~~~~~-~~e~l~~ 228 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAYKVAPTVFSELGADVIVINDEPN-----GFNINENCGAL-HPENLAQ 228 (446)
T ss_pred HHHHHHHHHHHhcCCccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEECCCCC-----CCCCCCCCCCC-CHHHHHH
Confidence 45667777766553222112223455555555688888999999999888764321 11211111110 1123444
Q ss_pred HhhcCCCc-eEEecCc----cccCCCCCceeccCCCchHHHHHHHHHhC
Q 023782 95 WFSQSPSN-TIIATGF----IASTPDNIPTTLKRDGSDFSAAIMGALLR 138 (277)
Q Consensus 95 ~l~~~~~~-VpVv~G~----i~~~~~G~~~~lgrggsD~~A~~lA~~l~ 138 (277)
........ -...-|+ ...|++|++.. .|.+.+++|..+-
T Consensus 229 ~v~~~~adlGia~DgDgDR~~vvd~~G~~l~-----~d~~~~l~a~~ll 272 (446)
T PRK14324 229 EVKRYRADIGFAFDGDADRLVVVDEKGEIVH-----GDKLLGVLAVYLK 272 (446)
T ss_pred HHHhCCCCEEEEECCCCceEEEECCCCCEeC-----HHHHHHHHHHHHH
Confidence 44321112 2222221 12245566442 5999999998773
No 231
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=27.02 E-value=4e+02 Score=22.87 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCC
Q 023782 46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG 125 (277)
Q Consensus 46 ~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrgg 125 (277)
-+...+.+.|++.|.....+.. .++.+ +.+...+.++++++.....+.|++|-.+.+..
T Consensus 23 ~ng~~L~~~L~~~G~~g~~v~~---~iVpD--------d~~~I~~aL~~a~~~~~~DlIITTGGtg~g~r---------- 81 (193)
T PRK09417 23 KGIPALEEWLASALTSPFEIET---RLIPD--------EQDLIEQTLIELVDEMGCDLVLTTGGTGPARR---------- 81 (193)
T ss_pred chHHHHHHHHHHcCCCCceEEE---EECCC--------CHHHHHHHHHHHhhcCCCCEEEECCCCCCCCC----------
Confidence 4677888899998865322211 22222 23344566777664224578888885554433
Q ss_pred chHHHHHHHHHhC
Q 023782 126 SDFSAAIMGALLR 138 (277)
Q Consensus 126 sD~~A~~lA~~l~ 138 (277)
|.+.-.+...++
T Consensus 82 -DvTpeAv~~l~~ 93 (193)
T PRK09417 82 -DVTPEATLAVAD 93 (193)
T ss_pred -CcHHHHHHHHhC
Confidence 666666666554
No 232
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=26.57 E-value=1.5e+02 Score=27.27 Aligned_cols=94 Identities=18% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEE-EccccceeecCCCCCCcCCCchHHHHHHHHHhhcC-CCceEEecCccccC
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKW-MDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PSNTIIATGFIAST 113 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~-l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~-~~~VpVv~G~i~~~ 113 (277)
+|...-.||.+|++.++..|...|++.+. +|...-.+ .+.| +..++.......+.+++... .....|++. +
T Consensus 95 qDr~~~~ge~is~~~~a~ll~~~g~d~vit~DlHs~~~--~~~f-~ip~~~l~a~~~l~~~i~~~~~~~~viv~p----d 167 (308)
T TIGR01251 95 QDKKFKSREPISAKLVANLLETAGADRVLTVDLHSPQI--QGFF-DVPVDNLYASPVLAEYLKKKILDNPVVVSP----D 167 (308)
T ss_pred hccccCCCCCchHHHHHHHHHHcCCCEEEEecCChHHh--cCcC-CCceecccCHHHHHHHHHhhCCCCCEEEEE----C
Confidence 46666679999999999999999986433 34443211 1112 11122222223344444311 112223222 1
Q ss_pred CCCCceeccCCCchHHHHHHHHHhCcceEEEee
Q 023782 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146 (277)
Q Consensus 114 ~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~t 146 (277)
. |+-..|..+|..|++.-..+.+
T Consensus 168 ~----------g~~~~A~~lA~~Lg~~~~~i~k 190 (308)
T TIGR01251 168 A----------GGVERAKKVADALGCPLAIIDK 190 (308)
T ss_pred C----------chHHHHHHHHHHhCCCEEEEEE
Confidence 1 2355688999999987554544
No 233
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=26.31 E-value=3.6e+02 Score=21.96 Aligned_cols=65 Identities=9% Similarity=0.160 Sum_probs=41.6
Q ss_pred ccCCCCCceeccCCCc------hHHHHHHHHHhCcceEEEeecc--ccccccCCCCC-CC-CeEEe--eeCHHHHHHHH
Q 023782 111 ASTPDNIPTTLKRDGS------DFSAAIMGALLRAHQVTIWTDV--DGVYSADPRKV-SE-AVILR--TLSYQEAWEMS 177 (277)
Q Consensus 111 ~~~~~G~~~~lgrggs------D~~A~~lA~~l~A~~l~i~tDV--~Gvyt~dP~~~-~~-a~~i~--~is~~e~~~l~ 177 (277)
+.+-.|.+..+.||+- -.--...|..-||.-++++.+. +|.+. |-.. ++ ...|+ .|++++...|.
T Consensus 52 ~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~--~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 52 CGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQN--PFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred CCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCccc--ccccCCCCCceEeEEEeeHHHHHHHH
Confidence 3345688888888853 2334677889999999999999 88542 1111 11 23555 45666666664
No 234
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=25.85 E-value=4.2e+02 Score=25.49 Aligned_cols=112 Identities=12% Similarity=-0.025 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCC--cCCCchHHHHH
Q 023782 14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ--VDPDFSESEKR 91 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~--~~~~~~~~~~~ 91 (277)
+..+.|++.|.+.++... +-..+++.++.-.+...+...|++.|+.++.++... +..|+. .++..++.-+.
T Consensus 144 d~~~~Y~~~l~~~i~~~~--~~lkVvvd~~~G~~~~~~~~ll~~lG~~v~~i~~~~-----d~~F~~~~p~p~~~~~l~~ 216 (443)
T cd03089 144 DILPDYIDRLLSDIKLGK--RPLKVVVDAGNGAAGPIAPQLLEALGCEVIPLFCEP-----DGTFPNHHPDPTDPENLED 216 (443)
T ss_pred CCHHHHHHHHHHhccccc--CCCeEEEECCCCchHHHHHHHHHHCCCEEEEecCCC-----CCCCCCCCcCCCCHHHHHH
Confidence 345677777766664221 223345555555668889999999999877765432 223322 22222233344
Q ss_pred HHHHhhcC-CCceEEecCc----cccCCCCCceeccCCCchHHHHHHHHHh
Q 023782 92 LEKWFSQS-PSNTIIATGF----IASTPDNIPTTLKRDGSDFSAAIMGALL 137 (277)
Q Consensus 92 i~~~l~~~-~~~VpVv~G~----i~~~~~G~~~~lgrggsD~~A~~lA~~l 137 (277)
+.++.... .......-|+ ...|++|++.+ .|.+.+++|..+
T Consensus 217 l~~~v~~~~adlgia~D~DaDR~~ivd~~G~~l~-----~d~~~~lla~~l 262 (443)
T cd03089 217 LIAAVKENGADLGIAFDGDGDRLGVVDEKGEIIW-----GDRLLALFARDI 262 (443)
T ss_pred HHHHHHHcCCCEEEEecCCcceeEEECCCCcEeC-----HHHHHHHHHHHH
Confidence 55555322 2233333331 11245565442 599999999876
No 235
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=25.82 E-value=3.9e+02 Score=25.80 Aligned_cols=71 Identities=14% Similarity=0.296 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
+..++.+.|++.|+.+..+. +..+ |.+...+.+++..+ ...+.|+.|-.+ .|.-
T Consensus 205 n~~~l~a~l~~~G~~~~~~~-----~v~D--------d~~~i~~~l~~a~~--~~DlvIttGG~S-----------~G~~ 258 (411)
T PRK10680 205 NRLAVHLMLEQLGCEVINLG-----IIRD--------DPHALRAAFIEADS--QADVVISSGGVS-----------VGEA 258 (411)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----EeCC--------CHHHHHHHHHHhcc--CCCEEEEcCCCC-----------CCCc
Confidence 45678899999998765432 2222 23333455555443 567888877433 2334
Q ss_pred hHHHHHHHHHhCcceEEEee
Q 023782 127 DFSAAIMGALLRAHQVTIWT 146 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~t 146 (277)
|++.-.+.. +| +++|+.
T Consensus 259 D~~~~al~~-lG--~~~f~~ 275 (411)
T PRK10680 259 DYTKTILEE-LG--EIAFWK 275 (411)
T ss_pred chHHHHHHh-cC--cEEEEE
Confidence 888887765 46 676665
No 236
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=25.60 E-value=4.4e+02 Score=25.63 Aligned_cols=114 Identities=11% Similarity=0.034 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHH
Q 023782 14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 93 (277)
+.++.|++.|.+.++.....+-..+++.++.-..+..+...|++.|+++..++... ++.+....+. +..-+.+.
T Consensus 167 ~~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~~~~~~ll~~LG~~v~~l~~~~-----dg~~~~~~~~-~~~l~~l~ 240 (465)
T PRK14317 167 ELLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAVACAPEVFKALGAEVICLHDQP-----DGDRINVNCG-STHLEPLQ 240 (465)
T ss_pred ChHHHHHHHHHHhcCcccccCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeccc-----CCCCCCCCCc-hHhHHHHH
Confidence 34566777776555321111223456666666778889999999999887775431 1222111111 12223444
Q ss_pred HHhhcC-CCceEEecCc----cccCCCCCceeccCCCchHHHHHHHHHhC
Q 023782 94 KWFSQS-PSNTIIATGF----IASTPDNIPTTLKRDGSDFSAAIMGALLR 138 (277)
Q Consensus 94 ~~l~~~-~~~VpVv~G~----i~~~~~G~~~~lgrggsD~~A~~lA~~l~ 138 (277)
+.+... ...-...-|+ ...|++|++.. .|.+.+++|..+-
T Consensus 241 ~~v~~~~adlGia~DgDgDR~~~vd~~G~~i~-----~d~l~~l~a~~ll 285 (465)
T PRK14317 241 AAVLEHGADMGFAFDGDADRVLAVDGQGRVVD-----GDHILYLWGSHLQ 285 (465)
T ss_pred HHHHhcCCCEEEEECCCCcEEEEECCCCCEEC-----hhHHHHHHHHHHH
Confidence 444321 1222333332 11255665542 5999999998763
No 237
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=25.23 E-value=2.4e+02 Score=22.15 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=27.0
Q ss_pred CCCCceeccCCCc-h--HHHHHHHHHhCcceEEEeeccccccc
Q 023782 114 PDNIPTTLKRDGS-D--FSAAIMGALLRAHQVTIWTDVDGVYS 153 (277)
Q Consensus 114 ~~G~~~~lgrggs-D--~~A~~lA~~l~A~~l~i~tDV~Gvyt 153 (277)
-.|.+..+.||+. + .--...|...||.-++++.+.+|.+.
T Consensus 43 v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~ 85 (127)
T cd04819 43 LEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLP 85 (127)
T ss_pred CCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCc
Confidence 3455555545433 1 23567789999999999999988653
No 238
>PRK06545 prephenate dehydrogenase; Validated
Probab=25.01 E-value=61 Score=30.45 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=25.1
Q ss_pred CeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEE
Q 023782 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273 (277)
Q Consensus 240 nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~ 273 (277)
...-+.|. +.++||.+++++..|.++||||.
T Consensus 289 ~~~~~~v~---v~d~pg~~~~~~~~~~~~~i~i~ 319 (359)
T PRK06545 289 SFYDLYVD---VPDEPGVIARVTAILGEEGISIE 319 (359)
T ss_pred cceEEEEe---CCCCCCHHHHHHHHHHHcCCCee
Confidence 44455554 56899999999999999999985
No 239
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=24.90 E-value=6.4e+02 Score=24.42 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCC--chHHHHH
Q 023782 14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD--FSESEKR 91 (277)
Q Consensus 14 ~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~--~~~~~~~ 91 (277)
+.++.|.+.|.+.++-..- +-..+++.++--..+..+...|++.|+++..++...- +....++ .+..-+.
T Consensus 145 ~~~~~Y~~~l~~~i~~~~~-~~lkIvvD~~~G~~~~~~~~ll~~lG~~v~~l~~~~~-------~~~~~~~~~~~~~l~~ 216 (459)
T cd03088 145 DAADAYIARYTDFFGAGAL-KGLRIGVYQHSSVGRDLLVRILEALGAEVVPLGRSDT-------FIPVDTEAVRPEDRAL 216 (459)
T ss_pred hHHHHHHHHHHHHhCcccc-CCCEEEEECCCCCHHHHHHHHHHHcCCeEEEeCCCCC-------CCCCCCCcCCHHHHHH
Confidence 3456666666665532100 1123455555555588888999999999888763221 1111111 1233345
Q ss_pred HHHHhhcCC-CceEEecCc----cccCCCCCceeccCCCchHHHHHHHHHhCcceEEEeecc
Q 023782 92 LEKWFSQSP-SNTIIATGF----IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148 (277)
Q Consensus 92 i~~~l~~~~-~~VpVv~G~----i~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i~tDV 148 (277)
+.++..... ......-|+ ...|++|++.+ +|.+.+++|..+++.. +.++|
T Consensus 217 l~~~v~~~~adlGia~D~DgDR~~vvd~~G~~i~-----~d~l~~l~~~~~~~~~--Vv~~v 271 (459)
T cd03088 217 AAAWAAEHGLDAIVSTDGDGDRPLVADETGEWLR-----GDILGLLTARFLGADT--VVTPV 271 (459)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCceeECCCCCEEC-----chHHHHHHHHHhCCCE--EEEcc
Confidence 555554222 222333332 12255666653 4999999999998653 44444
No 240
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=24.77 E-value=3.6e+02 Score=21.41 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=36.3
Q ss_pred CCCceeccCCCch-HHHHHHHHHhCcceEEEeeccccccccCCCCCCCCe--EEeeeCHHHHHHHH
Q 023782 115 DNIPTTLKRDGSD-FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV--ILRTLSYQEAWEMS 177 (277)
Q Consensus 115 ~G~~~~lgrggsD-~~A~~lA~~l~A~~l~i~tDV~Gvyt~dP~~~~~a~--~i~~is~~e~~~l~ 177 (277)
.|.+..+-||+-. ..=+..|...||..++|+.|.++............- +.-.|++++...|.
T Consensus 44 ~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 44 KGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred CCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 3556666677532 222667999999999999998754211111001112 33356777777663
No 241
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=24.73 E-value=4.3e+02 Score=25.20 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++.++.+.|++.|..+.... ++.+ |.+...+.++++++ ...+.|++|-.+. |..
T Consensus 196 n~~~l~~~l~~~G~~~~~~~-----~v~D--------d~~~i~~~l~~a~~--~~DliittGG~s~-----------g~~ 249 (394)
T cd00887 196 NSYMLAALLRELGAEVVDLG-----IVPD--------DPEALREALEEALE--EADVVITSGGVSV-----------GDY 249 (394)
T ss_pred hHHHHHHHHHHCCCEEEEec-----eeCC--------CHHHHHHHHHHHhh--CCCEEEEeCCCCC-----------Ccc
Confidence 46688889999998764432 2222 33445567777765 4678888774332 334
Q ss_pred hHHHHHHHHHhCcc
Q 023782 127 DFSAAIMGALLRAH 140 (277)
Q Consensus 127 D~~A~~lA~~l~A~ 140 (277)
|++...+... |.+
T Consensus 250 D~~~~al~~~-g~~ 262 (394)
T cd00887 250 DFVKEVLEEL-GGE 262 (394)
T ss_pred hhHHHHHHhC-CCe
Confidence 9988888765 554
No 242
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This family represents a region within bacterial histidine kinase enzymes. Two-component signal transduction systems such as those mediated by histidine kinase are integral parts of bacterial cellular regulatory processes, and are used to regulate the expression of genes involved in virulence. Members of this family often contain IPR003594 from INTERPRO and/or IPR003660 from INTERPRO.; GO: 0000155 two-component sensor activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane
Probab=24.44 E-value=82 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=33.7
Q ss_pred ccccccccccHHHHHHHHHHHHhhhcCCCChhHHHHHhhhcHHH
Q 023782 3 QVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELW 46 (277)
Q Consensus 3 ~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~ 46 (277)
|.+.|.+++.++|+=..++.+..++.-+ ++...+.+...++.+
T Consensus 1 el~~L~~QInPHFl~NtLn~I~~l~~~~-~~~~~~~i~~ls~~l 43 (82)
T PF06580_consen 1 ELKALQAQINPHFLFNTLNSISWLARID-PEKASEMILSLSDLL 43 (82)
T ss_pred ChHHHHhhcChHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHH
Confidence 4566778899999988888888887755 777888887776663
No 243
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=24.07 E-value=4.2e+02 Score=25.65 Aligned_cols=70 Identities=20% Similarity=0.261 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCCCCCceeccCCCc
Q 023782 47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126 (277)
Q Consensus 47 s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~G~~~~lgrggs 126 (277)
++.++.+.|++.|..+... .+..+ |.+...+.++++++ ...+.|++|-.+ .|.-
T Consensus 221 N~~~L~a~l~~~G~~v~~~-----~~v~D--------d~~~i~~~l~~a~~--~~DlIItTGG~S-----------~G~~ 274 (419)
T PRK14690 221 NRPMLLALARRWGHAPVDL-----GRVGD--------DRAALAARLDRAAA--EADVILTSGGAS-----------AGDE 274 (419)
T ss_pred HHHHHHHHHHHCCCEEEEE-----eeeCC--------CHHHHHHHHHHhCc--cCCEEEEcCCcc-----------CCCc
Confidence 5678999999999886443 22222 23334556666654 567888877432 2344
Q ss_pred hHHHHHHHHHhCcceEEEe
Q 023782 127 DFSAAIMGALLRAHQVTIW 145 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~ 145 (277)
|++-..+..+ | ++.+|
T Consensus 275 D~v~~~l~~~-G--~~~~~ 290 (419)
T PRK14690 275 DHVSALLREA-G--AMQSW 290 (419)
T ss_pred chHHHHHHhc-C--CEEEc
Confidence 8888888765 5 45555
No 244
>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=23.75 E-value=1.6e+02 Score=28.95 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=31.5
Q ss_pred ceeccCCCchHHHHHHHHHhCcc-----eEEEeecccccccc
Q 023782 118 PTTLKRDGSDFSAAIMGALLRAH-----QVTIWTDVDGVYSA 154 (277)
Q Consensus 118 ~~~lgrggsD~~A~~lA~~l~A~-----~l~i~tDV~Gvyt~ 154 (277)
+.++|.||||.--.+++.+|+.. ++-|.+++||...+
T Consensus 153 VvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia 194 (546)
T KOG2446|consen 153 VVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIA 194 (546)
T ss_pred EEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHH
Confidence 67899999999999999999753 67899999997654
No 245
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=23.54 E-value=2.8e+02 Score=20.56 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=14.9
Q ss_pred HHHHHHHHhCcceEEEeeccc
Q 023782 129 SAAIMGALLRAHQVTIWTDVD 149 (277)
Q Consensus 129 ~A~~lA~~l~A~~l~i~tDV~ 149 (277)
...+.....++++++++||-|
T Consensus 50 i~~l~~~~~~~~~iiiatD~D 70 (100)
T PF01751_consen 50 IKNLKKLLKKADEIIIATDPD 70 (100)
T ss_dssp HHHHHHHHHSCSEEEEEC-SS
T ss_pred chhhHHHhhhccEeeecCCCC
Confidence 455555557899999999865
No 246
>PRK05007 PII uridylyl-transferase; Provisional
Probab=23.12 E-value=1.2e+02 Score=32.30 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=29.2
Q ss_pred cCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEE
Q 023782 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274 (277)
Q Consensus 239 ~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~ 274 (277)
++.++|.|.. .++||.+++|.++|.+.|++|..
T Consensus 806 ~~~TvlEV~a---~DRpGLL~~I~~~l~~~~l~I~~ 838 (884)
T PRK05007 806 DRRSYMELIA---LDQPGLLARVGKIFADLGISLHG 838 (884)
T ss_pred CCeEEEEEEe---CCchHHHHHHHHHHHHCCcEEEE
Confidence 4678899985 47999999999999999999975
No 247
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=22.87 E-value=74 Score=21.88 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=18.1
Q ss_pred hhhcHHHHHHHHHHHHHHCCCCeEEEccccc
Q 023782 40 VGHGELWSAQMLAAVVRKNGIDCKWMDTREV 70 (277)
Q Consensus 40 ~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~ 70 (277)
..++..+-+.++...|++.||+++..+....
T Consensus 4 ~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~ 34 (67)
T PF09413_consen 4 YTAGDPIEAELIKGLLEENGIPAFVKNEHMS 34 (67)
T ss_dssp EEE--HHHHHHHHHHHHHTT--EE--S----
T ss_pred EEcCCHHHHHHHHHHHHhCCCcEEEECCccc
Confidence 3456678899999999999999998866544
No 248
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.72 E-value=3.3e+02 Score=25.35 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=51.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCe-EEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcC---CCceEEecCcc
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDC-KWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS---PSNTIIATGFI 110 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a-~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~---~~~VpVv~G~i 110 (277)
.+|.....||-+|+++++..|...|++- ..+|...-.+ .+-| +..++.......+.+++... .....|++.+.
T Consensus 98 RQDr~~~~~e~isak~~a~ll~~~g~d~vit~D~H~~~~--~~~f-~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~ 174 (320)
T PRK02269 98 RQDRKARSREPITSKLVANMLEVAGVDRLLTVDLHAAQI--QGFF-DIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDH 174 (320)
T ss_pred hhhcccCCCCCchHHHHHHHHhhcCCCEEEEECCChHHH--hccc-cCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECc
Confidence 3566666899999999999999999853 3445543211 1112 11122212223343444211 12344444331
Q ss_pred ccCCCCCceeccCCCchHHHHHHHHHhCcceEEE
Q 023782 111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTI 144 (277)
Q Consensus 111 ~~~~~G~~~~lgrggsD~~A~~lA~~l~A~~l~i 144 (277)
|+=-.|..+|..|+....++
T Consensus 175 --------------G~~~~A~~lA~~lg~~~~~~ 194 (320)
T PRK02269 175 --------------GGVTRARKLAQFLKTPIAII 194 (320)
T ss_pred --------------cHHHHHHHHHHHhCCCEEEE
Confidence 23455889999999865443
No 249
>PHA01735 hypothetical protein
Probab=21.94 E-value=2.1e+02 Score=20.63 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCChhHHHHHhhhcHHHHHHHH--HHHHHHCCCCeEEEccccce
Q 023782 18 STYNFLSNVDSGHATESFTDFVVGHGELWSAQML--AAVVRKNGIDCKWMDTREVL 71 (277)
Q Consensus 18 ~~~~~L~~~~~~~~~~~~~~~v~s~Ge~~s~~ll--~~~L~~~Gi~a~~l~~~~~~ 71 (277)
+.|+.|..++. ..+...|.+ ||.-++.+= +..|++++|.++..+.+.+.
T Consensus 8 e~fs~LH~~lt----~El~~Riks-geATtaDL~AA~d~Lk~NdItgv~~~gspl~ 58 (76)
T PHA01735 8 EQFDELHQLLT----NELLSRIKS-GEATTADLRAACDWLKSNDITGVAVDGSPLA 58 (76)
T ss_pred HHHHHHHHHHH----HHHHHHHhc-CcccHHHHHHHHHHHHHCCCceeeCCCCHHH
Confidence 34556665553 233344444 666555543 46799999999999887764
No 250
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=21.92 E-value=1e+02 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.6
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHhCCCcEE
Q 023782 243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273 (277)
Q Consensus 243 ~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~ 273 (277)
.+.|++. ++||+..++.+.|..+|||+.
T Consensus 94 ~v~v~a~---DrpgIv~~~T~lf~~~~inie 121 (176)
T COG2716 94 WVYVDAN---DRPGIVEEFTALFDGHGINIE 121 (176)
T ss_pred EEEEEec---CCccHHHHHHHHHHhcCCchh
Confidence 3556764 699999999999999999974
No 251
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.68 E-value=64 Score=23.52 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=18.4
Q ss_pred CCCCchhHHHHHHHHHHhCCCc
Q 023782 250 GMAGVPGTANAIFGAVKDVGAN 271 (277)
Q Consensus 250 gm~~~~gv~a~if~~L~~~~I~ 271 (277)
.+.++||-++++++.|+.++|+
T Consensus 7 ~ipD~PG~L~~ll~~l~~anI~ 28 (85)
T cd04906 7 TIPERPGSFKKFCELIGPRNIT 28 (85)
T ss_pred ecCCCCcHHHHHHHHhCCCcee
Confidence 3778999999999999977666
No 252
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=21.56 E-value=2.1e+02 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=17.4
Q ss_pred EEeeccccccccCCC-CCCCCeEEeeeCH
Q 023782 143 TIWTDVDGVYSADPR-KVSEAVILRTLSY 170 (277)
Q Consensus 143 ~i~tDV~Gvyt~dP~-~~~~a~~i~~is~ 170 (277)
.+..|+||.+..++. ..++.+.++.+..
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~ 31 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAFNV 31 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEEec
Confidence 467899999987533 2234455666543
No 253
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=21.46 E-value=6e+02 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.469 Sum_probs=23.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHCCCCeEEEc
Q 023782 36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66 (277)
Q Consensus 36 ~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~ 66 (277)
.-.|+++|.. ++.++..|++.|++.+.+|
T Consensus 402 ~vII~G~Gr~--G~~va~~L~~~g~~vvvID 430 (621)
T PRK03562 402 RVIIAGFGRF--GQIVGRLLLSSGVKMTVLD 430 (621)
T ss_pred cEEEEecChH--HHHHHHHHHhCCCCEEEEE
Confidence 3457888888 9999999999999876654
No 254
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=21.36 E-value=1.1e+02 Score=28.72 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=30.9
Q ss_pred eeEeecCeeEEEEecCCCCCchhHHHHHHHHHHhCCCcEEEE
Q 023782 234 GFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 234 ~i~~~~nia~Isvvg~gm~~~~gv~a~if~~L~~~~I~V~~i 275 (277)
++........+.|. +.++||.++++++.++++++||.-|
T Consensus 298 gl~~~gr~~~l~v~---l~D~pG~L~~v~~~i~~~~~NI~~i 336 (380)
T TIGR01127 298 GLVKSGRKVRIETV---LPDRPGALYHLLESIAEARANIVKI 336 (380)
T ss_pred HHHhCCCEEEEEEE---eCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 34445556677775 6789999999999999999998755
No 255
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.92 E-value=3e+02 Score=25.02 Aligned_cols=92 Identities=12% Similarity=-0.003 Sum_probs=52.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHCCCCeEEEccccceeecCCCCCCcCCCchHHHHHHHHHhhcCCCceEEecCccccCC
Q 023782 35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP 114 (277)
Q Consensus 35 ~~~~v~s~Ge~~s~~ll~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~ 114 (277)
.+|...--||.+|++.++..|...|=....+|+..-.+ . +-|.-.-.++. ....+.+++........|++..
T Consensus 91 RqDr~~~~ge~isak~~a~ll~~~~d~vitvD~H~~~~-~-~~f~~~~~~l~-a~~~la~~i~~~~~~~vvv~pd----- 162 (285)
T PRK00934 91 RQDKRFKPGEPISARAIAKIISAYYDRIITINIHEPSI-L-EFFPIPFINLD-AAPLIAEYIGDKLDDPLVLAPD----- 162 (285)
T ss_pred ccccccCCCCCccHHHHHHHHHHhcCEEEEEcCChHHH-c-CcCCCcEeEee-cHHHHHHHHHhcCCCCEEEEeC-----
Confidence 36666677999999999999999986666677765432 1 11211111222 2234444443111122233221
Q ss_pred CCCceeccCCCchHHHHHHHHHhCcceEE
Q 023782 115 DNIPTTLKRDGSDFSAAIMGALLRAHQVT 143 (277)
Q Consensus 115 ~G~~~~lgrggsD~~A~~lA~~l~A~~l~ 143 (277)
.|+-..|..+|..++..-..
T Consensus 163 ---------~Ga~~~a~~lA~~l~~~~~~ 182 (285)
T PRK00934 163 ---------KGALELAKEAAEILGCEYDY 182 (285)
T ss_pred ---------CchHHHHHHHHHHhCCCEEE
Confidence 13466688999999976443
No 256
>PRK06349 homoserine dehydrogenase; Provisional
Probab=20.63 E-value=91 Score=30.17 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=24.2
Q ss_pred CCCchhHHHHHHHHHHhCCCcEEEEeC
Q 023782 251 MAGVPGTANAIFGAVKDVGANVIMISQ 277 (277)
Q Consensus 251 m~~~~gv~a~if~~L~~~~I~V~~isq 277 (277)
..+.||+++++-..|++++|++..+.|
T Consensus 355 v~d~pGvLa~I~~~f~~~~vsI~si~q 381 (426)
T PRK06349 355 VADKPGVLAKIAAIFAENGISIESILQ 381 (426)
T ss_pred ecCCcchHHHHHHHHhhcCccEEEEEe
Confidence 457899999999999999999998766
No 257
>PRK08818 prephenate dehydrogenase; Provisional
Probab=20.57 E-value=91 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHHhCCCcEEEE
Q 023782 253 GVPGTANAIFGAVKDVGANVIMI 275 (277)
Q Consensus 253 ~~~gv~a~if~~L~~~~I~V~~i 275 (277)
+.||.++++++.|+++|||+.-|
T Consensus 305 d~pG~L~~vl~~la~~~INit~I 327 (370)
T PRK08818 305 DRPGSLRTLLHVFEQHGVNLSSI 327 (370)
T ss_pred CCCChHHHHHHHHHHcCcccceE
Confidence 88999999999999999998644
No 258
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=20.28 E-value=1.5e+02 Score=23.91 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhCcceEEEeeccc
Q 023782 127 DFSAAIMGALLRAHQVTIWTDVD 149 (277)
Q Consensus 127 D~~A~~lA~~l~A~~l~i~tDV~ 149 (277)
..+...++.++.-+.|+++||-|
T Consensus 43 ~~~ie~i~~~~~~k~VIILTD~D 65 (127)
T COG1658 43 LETIELIKKAQKYKGVIILTDPD 65 (127)
T ss_pred HHHHHHHHHhhccCCEEEEeCCC
Confidence 66778899999889999999854
Done!