BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023783
         (277 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SO9|A Chain A, Solution Structure Of Apocox11, 30 Structures
 pdb|1SP0|A Chain A, Solution Structure Of Apocox11
          Length = 164

 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 98/153 (64%), Gaps = 9/153 (5%)

Query: 120 VPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPT 179
           VPLY  FC+ TGY GT QR E   + I            ++ V F+A+VA G+PW+F+P 
Sbjct: 2   VPLYDMFCRVTGYNGTTQRVEQASDLILDE---------KIKVTFDANVAAGLPWEFVPV 52

Query: 180 QREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGE 239
           QR++ V+ GE+    Y A+N +STP TG +T+NVTPM A  YFNK+QCFCF E  L PGE
Sbjct: 53  QRDIDVRIGETVQIMYRAKNLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGE 112

Query: 240 QIDMPVFFYIDPEFETDPRMDGINNLILSYTFF 272
           +++MPV F++DPE        GI  L LSYTF+
Sbjct: 113 EMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFY 145


>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
 pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
          Length = 346

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 76  WKSNSFSSFQRHYASHASTEQKSRKMLLYLTALVFAMVGST 116
           W +NS    +  Y S    EQ S K LLY  AL+ AM+  T
Sbjct: 242 WNTNSLKKLKSIYIS----EQASVKPLLYQRALIRAMIAET 278


>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
           With Its Propeptide
          Length = 106

 Score = 27.7 bits (60), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 71  GSGCLWKS----NSFSSFQRHYA-SHASTEQKSRKMLLYLTALVF 110
           GS   WK     ++FSSFQ  YA S+A+ E+K R+  ++   LV+
Sbjct: 11  GSIWEWKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVY 55


>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
           SELENOMETHIONINE
          Length = 504

 Score = 27.3 bits (59), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 168 VADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAA---VYFNK 224
           V DG P+ + P   + + +P + A  FYT+        TG+    + P +AA   V F  
Sbjct: 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGT------TGLPKAAIIPQRAAESRVLFXS 186

Query: 225 IQC 227
            Q 
Sbjct: 187 TQV 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,246,871
Number of Sequences: 62578
Number of extensions: 322647
Number of successful extensions: 606
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 10
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)