Query 023783
Match_columns 277
No_of_seqs 132 out of 524
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:37:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00128 cytochrome c oxidase 100.0 2.4E-81 5.2E-86 566.8 20.2 179 93-277 48-226 (232)
2 PRK05089 cytochrome C oxidase 100.0 1.4E-80 3E-85 547.6 18.8 172 93-276 5-176 (188)
3 COG3175 COX11 Cytochrome oxida 100.0 4E-80 8.6E-85 541.4 16.8 173 95-276 7-180 (195)
4 KOG2540 Cytochrome oxidase ass 100.0 9.5E-76 2.1E-80 527.5 12.3 250 5-276 1-250 (269)
5 PF04442 CtaG_Cox11: Cytochrom 100.0 8.2E-75 1.8E-79 496.7 10.4 151 119-274 1-152 (152)
6 PF14874 PapD-like: Flagellar- 86.8 1.9 4.1E-05 33.3 5.5 57 184-248 15-72 (102)
7 PF10633 NPCBM_assoc: NPCBM-as 83.7 1.4 3E-05 33.1 3.4 62 185-254 1-65 (78)
8 PF07610 DUF1573: Protein of u 77.0 5.3 0.00012 27.6 4.2 40 195-247 2-45 (45)
9 PRK13202 ureB urease subunit b 74.3 9.9 0.00021 31.7 5.8 75 172-246 2-83 (104)
10 PF10399 UCR_Fe-S_N: Ubiquitin 73.1 4.1 8.9E-05 28.5 2.8 28 97-124 9-36 (41)
11 PF13473 Cupredoxin_1: Cupredo 71.9 14 0.00031 28.9 6.0 60 158-245 21-80 (104)
12 PF06030 DUF916: Bacterial pro 64.4 14 0.00031 30.7 4.9 66 182-248 20-102 (121)
13 PRK13203 ureB urease subunit b 64.3 22 0.00048 29.6 5.8 74 172-246 2-82 (102)
14 PF14646 MYCBPAP: MYCBP-associ 64.0 18 0.0004 35.7 6.3 69 180-248 238-310 (426)
15 PF00699 Urease_beta: Urease b 59.8 21 0.00045 29.6 4.9 74 172-246 1-81 (100)
16 PRK02710 plastocyanin; Provisi 59.3 69 0.0015 26.1 8.0 62 159-242 30-91 (119)
17 TIGR00192 urease_beta urease, 59.0 32 0.00069 28.6 5.9 74 172-246 2-82 (101)
18 TIGR02756 TraK_Ftype type-F co 58.2 13 0.00028 34.2 3.9 48 188-243 181-228 (232)
19 PF11611 DUF4352: Domain of un 58.0 66 0.0014 25.1 7.4 72 188-269 35-112 (123)
20 cd03498 SQR_TypeB_2_TM Succina 55.8 12 0.00025 33.7 3.1 45 82-126 163-207 (209)
21 PF09624 DUF2393: Protein of u 55.6 59 0.0013 27.2 7.1 60 187-246 60-130 (149)
22 PRK13201 ureB urease subunit b 55.5 36 0.00077 29.7 5.8 75 172-247 2-83 (136)
23 PF04222 DUF416: Protein of un 55.5 8.1 0.00018 35.0 2.0 25 110-134 17-41 (191)
24 cd00407 Urease_beta Urease bet 51.8 51 0.0011 27.4 5.9 74 172-246 2-82 (101)
25 PRK13192 bifunctional urease s 51.5 56 0.0012 30.3 6.7 91 155-246 88-191 (208)
26 PRK13205 ureB urease subunit b 50.8 44 0.00096 29.8 5.7 75 172-247 2-83 (162)
27 PRK13204 ureB urease subunit b 50.2 52 0.0011 29.4 6.1 76 170-246 23-105 (159)
28 PF07705 CARDB: CARDB; InterP 50.1 39 0.00085 25.0 4.8 60 183-250 13-72 (101)
29 TIGR02656 cyanin_plasto plasto 49.9 1.1E+02 0.0024 23.9 7.4 62 173-243 11-72 (99)
30 COG3068 Uncharacterized protei 48.0 12 0.00026 33.8 1.8 25 110-134 20-44 (194)
31 PRK15172 putative aldose-1-epi 47.0 68 0.0015 30.0 6.8 48 159-207 109-156 (300)
32 cd09021 Aldose_epim_Ec_YphB al 46.2 62 0.0014 29.3 6.3 47 159-208 93-139 (273)
33 cd09022 Aldose_epim_Ec_YihR Al 44.9 67 0.0014 29.3 6.3 46 159-206 90-135 (284)
34 cd09024 Aldose_epim_lacX Aldos 44.6 68 0.0015 29.5 6.4 50 158-209 87-138 (288)
35 PRK13198 ureB urease subunit b 44.6 71 0.0015 28.5 6.1 78 169-247 27-111 (158)
36 COG0832 UreB Urea amidohydrola 44.0 63 0.0014 27.1 5.3 66 172-246 2-82 (106)
37 PF11906 DUF3426: Protein of u 40.7 2.1E+02 0.0045 23.6 12.5 19 118-136 28-46 (149)
38 cd01081 Aldose_epim aldose 1-e 39.3 1.2E+02 0.0026 26.8 6.8 51 158-210 94-145 (284)
39 PF12158 DUF3592: Protein of u 39.3 75 0.0016 25.5 5.2 48 157-206 60-113 (148)
40 PRK13986 urease subunit alpha; 38.3 1.1E+02 0.0025 28.7 6.7 92 155-247 89-188 (225)
41 PRK15224 pili assembly chapero 38.2 75 0.0016 29.6 5.6 56 186-257 39-105 (237)
42 PF13473 Cupredoxin_1: Cupredo 37.9 88 0.0019 24.4 5.2 45 154-198 39-83 (104)
43 PF06159 DUF974: Protein of un 36.9 1.7E+02 0.0036 27.1 7.7 77 184-270 9-92 (249)
44 PRK15246 fimbrial assembly cha 36.6 86 0.0019 28.9 5.7 53 189-256 24-92 (233)
45 PF06586 TraK: TraK protein; 36.4 43 0.00093 30.0 3.6 47 189-243 186-232 (234)
46 PF06475 Glycolipid_bind: Puta 36.0 51 0.0011 29.4 3.9 54 213-273 85-144 (179)
47 PRK15218 fimbrial chaperone pr 35.2 94 0.002 28.6 5.7 23 233-256 77-99 (226)
48 PRK15295 fimbrial assembly cha 34.8 97 0.0021 28.3 5.7 23 233-256 75-97 (226)
49 COG1361 S-layer domain [Cell e 34.4 3.1E+02 0.0067 27.3 9.6 103 157-273 137-245 (500)
50 PRK15192 fimbrial chaperone Bc 33.2 1.1E+02 0.0024 28.4 5.8 23 233-256 83-105 (234)
51 PF00345 PapD_N: Pili and flag 31.9 2.6E+02 0.0055 22.2 7.1 75 177-256 3-79 (122)
52 PF01345 DUF11: Domain of unkn 31.2 1.7E+02 0.0037 21.4 5.6 44 173-216 25-68 (76)
53 TIGR02046 sdhC_b558_fam succin 30.9 49 0.0011 30.0 3.1 45 82-126 167-211 (214)
54 PRK15233 putative fimbrial cha 30.0 1.2E+02 0.0027 28.4 5.6 72 177-256 43-116 (246)
55 PRK10926 ferredoxin-NADP reduc 29.8 2.3E+02 0.0049 25.5 7.1 82 156-252 16-103 (248)
56 PRK15253 putative fimbrial ass 29.2 1.3E+02 0.0027 28.1 5.5 23 233-256 92-114 (242)
57 PRK15211 fimbrial chaperone pr 28.8 1.4E+02 0.0031 27.5 5.7 23 233-256 77-99 (229)
58 PF04744 Monooxygenase_B: Mono 28.7 94 0.002 31.3 4.8 60 186-246 260-332 (381)
59 PF08737 Rgp1: Rgp1; InterPro 28.0 83 0.0018 31.3 4.4 41 228-271 108-148 (415)
60 PF00927 Transglut_C: Transglu 27.1 1.2E+02 0.0027 23.6 4.4 59 185-247 11-74 (107)
61 PF06483 ChiC: Chitinase C; I 27.0 46 0.001 30.2 2.2 36 220-255 113-148 (180)
62 PLN00194 aldose 1-epimerase; P 26.4 2.3E+02 0.0051 27.1 6.9 46 159-206 120-166 (337)
63 PF00207 A2M: Alpha-2-macroglo 25.2 1.2E+02 0.0027 23.2 4.0 26 184-209 65-90 (92)
64 PRK11385 putativi pili assembl 25.0 2.3E+02 0.0049 26.3 6.4 23 233-256 87-110 (236)
65 cd09025 Aldose_epim_Slr1438 Al 24.8 1.7E+02 0.0036 26.8 5.4 49 159-209 99-149 (271)
66 TIGR03079 CH4_NH3mon_ox_B meth 23.9 1.6E+02 0.0034 29.9 5.3 59 186-245 279-350 (399)
67 TIGR02745 ccoG_rdxA_fixG cytoc 23.7 2E+02 0.0043 29.1 6.1 94 100-208 301-408 (434)
68 PF10633 NPCBM_assoc: NPCBM-as 23.5 1.7E+02 0.0036 21.7 4.3 40 158-202 22-63 (78)
69 PF00127 Copper-bind: Copper b 23.0 1.9E+02 0.0041 22.5 4.7 61 174-244 12-73 (99)
70 PF14155 DUF4307: Domain of un 22.8 3.9E+02 0.0085 21.9 6.8 54 154-207 43-107 (112)
71 PRK13736 conjugal transfer pro 22.7 1.9E+02 0.0042 27.0 5.5 52 188-247 184-237 (245)
72 PF05753 TRAP_beta: Translocon 22.5 3.1E+02 0.0067 24.4 6.5 66 184-253 33-99 (181)
73 PF07353 Uroplakin_II: Uroplak 22.4 1.3E+02 0.0027 27.4 4.0 75 127-203 51-127 (184)
74 PF07070 Spo0M: SpoOM protein; 22.4 2.3E+02 0.005 26.2 5.8 24 231-254 78-101 (218)
75 PF06205 GT36_AF: Glycosyltran 21.7 99 0.0021 24.3 2.9 20 178-197 63-82 (90)
76 COG3765 WzzB Chain length dete 21.3 64 0.0014 32.0 2.1 24 97-120 314-337 (347)
77 PF13807 GNVR: G-rich domain o 21.0 79 0.0017 24.0 2.2 23 98-120 57-79 (82)
78 PF08308 PEGA: PEGA domain; I 20.8 1.3E+02 0.0028 21.7 3.2 23 176-198 46-68 (71)
79 PF00870 P53: P53 DNA-binding 20.8 3.3E+02 0.0071 24.7 6.4 57 157-213 12-71 (196)
80 COG2017 GalM Galactose mutarot 20.7 2.5E+02 0.0055 26.5 5.9 48 159-209 116-163 (308)
81 PRK09926 putative chaperone pr 20.7 2.2E+02 0.0048 26.3 5.4 23 233-256 84-107 (246)
82 PF02752 Arrestin_C: Arrestin 20.6 1.6E+02 0.0034 22.8 3.9 85 184-271 15-110 (136)
83 TIGR01451 B_ant_repeat conserv 20.5 2E+02 0.0044 20.4 4.0 34 183-216 6-39 (53)
84 cd06189 flavin_oxioreductase N 20.1 3E+02 0.0065 23.8 5.9 74 156-243 10-84 (224)
85 TIGR03096 nitroso_cyanin nitro 20.0 1.4E+02 0.0031 25.7 3.8 28 172-203 54-81 (135)
No 1
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=100.00 E-value=2.4e-81 Score=566.77 Aligned_cols=179 Identities=50% Similarity=0.952 Sum_probs=167.8
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCC
Q 023783 93 STEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGM 172 (277)
Q Consensus 93 ~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~l 172 (277)
...++|++++++|++++++|||||||+|||||+||++|||||||++++... ....++.+|+|+|+|||+++++|
T Consensus 48 ~~~~~~~~~~~~l~~~~v~Mfgf~fA~VPLY~~fC~~TG~~Gtt~~~~~~~------~~~~~~~~R~I~V~F~a~v~~~l 121 (232)
T PTZ00128 48 KFKKERGQFFYYNLSLYIAMFGCSFAFVPLYRLFCQSTGYGGDADKKDYSM------KKKYPVPKRLIKIRFLADTGSTM 121 (232)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCcccccccccc------ccccccCceEEEEEEeccCCCCC
Confidence 445668899999999999999999999999999999999999998865321 12357899999999999999999
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe 252 (277)
||+|+|+|++|+|||||+++++|+|+|++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+||||||
T Consensus 122 pW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A~ynV~P~~Ag~YFnKieCFCF~eQ~L~pgE~~~MPV~F~IDP~ 201 (232)
T PTZ00128 122 PWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVATYHIAPPEAGLYFNKIQCFCFEEQRLNPHEEVDMPVFFYIDPD 201 (232)
T ss_pred CceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccccccCCCCeEecCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCcEEEEEEEeeecCCC
Q 023783 253 FETDPRMDGINNLILSYTFFKVNED 277 (277)
Q Consensus 253 i~~Dp~~~~v~tITLSYTFF~~~~~ 277 (277)
|++||++++|++||||||||+++++
T Consensus 202 i~~D~~~~~v~~ITLSYTFF~~~~~ 226 (232)
T PTZ00128 202 ILNDPRLKWVDEITLSYTFFEAESE 226 (232)
T ss_pred CCCCcccCCcCEEEEEEEEEecCCC
Confidence 9999999999999999999999754
No 2
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=100.00 E-value=1.4e-80 Score=547.64 Aligned_cols=172 Identities=45% Similarity=0.856 Sum_probs=161.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCC
Q 023783 93 STEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGM 172 (277)
Q Consensus 93 ~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~l 172 (277)
..+++|++++++|++++++|||||||+|||||+||++|||||||+.+... ....+|.+|+|+|+|||+++++|
T Consensus 5 ~~~~~n~~~~~~l~~~~~~Mfgf~fA~VPLY~~fC~~TG~~G~t~~~~~~-------~~~~~~~~R~I~V~F~a~~~~~l 77 (188)
T PRK05089 5 AQKRSNRRLVFKLLLVVVGMFGFGFALVPLYDVFCEVTGINGTTQAARVE-------AASQVDLSRTITVEFDANVNGGL 77 (188)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhCCCceecccccc-------ccCcccCCcEEEEEEeccCCCCC
Confidence 34567899999999999999999999999999999999999999863221 12358899999999999999999
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe 252 (277)
||+|+|+|++|+|||||+++++|+|+|++|++|+|||+|||+|.+||.||||||||||+||+|+|||++||||+||||||
T Consensus 78 pW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPV~F~IDP~ 157 (188)
T PRK05089 78 PWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQAIPSVTPGQAGAYFNKIECFCFTQQTLQPGETREMPVVFYVDPD 157 (188)
T ss_pred CceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEEecccCHHHHhhhccceeeecccCcccCCCCeEecCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCcEEEEEEEeeecCC
Q 023783 253 FETDPRMDGINNLILSYTFFKVNE 276 (277)
Q Consensus 253 i~~Dp~~~~v~tITLSYTFF~~~~ 276 (277)
|++| |++||||||||++++
T Consensus 158 i~~d-----v~~iTLSYTff~~~~ 176 (188)
T PRK05089 158 LPKD-----VKTITLSYTFFDVTA 176 (188)
T ss_pred cccc-----cCEEEEEEEEEecCC
Confidence 9997 999999999999875
No 3
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-80 Score=541.37 Aligned_cols=173 Identities=53% Similarity=1.025 Sum_probs=163.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehh-hHHHHhhccCCCcccccEEEEEEEecCCCCCC
Q 023783 95 EQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKET-VEEKIARHSKDGTVTTREVVVQFNADVADGMP 173 (277)
Q Consensus 95 ~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~-~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lP 173 (277)
+.+||+++.+|++++++|+|++||+||||++||++|||||||++.+. ..+ ...+|+|+|+||||++.+||
T Consensus 7 k~snr~~a~~~l~~~v~Mig~ayAaVPLY~lfC~vTGygGtt~r~~~~~~~---------~~ldk~I~V~Fdanv~~~lp 77 (195)
T COG3175 7 KVSNRTLAGYLLAVFVGMIGLAYAAVPLYKLFCRVTGYGGTTQRDEVQYSD---------TQLDKTITVEFDANVANGLP 77 (195)
T ss_pred cccchhhhHhHHHHHHHHHHHHHhhhhHHHHHhhhhccCCEeeehhhhccc---------ceeeEEEEEEEccccCCCCc
Confidence 34689999999999999999999999999999999999999998762 211 23459999999999999999
Q ss_pred eEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCC
Q 023783 174 WKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEF 253 (277)
Q Consensus 174 W~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei 253 (277)
|+|+|.|++|.|||||+++++|+|+|++|+||+|||+|||+|++||.||||||||||+||+|+|||++||||+||||||+
T Consensus 78 W~F~p~q~~v~v~pGet~~~~y~a~N~sd~~itg~A~~nv~P~~Ag~YF~KveCFCFteq~L~pgE~vemPV~FfVDpd~ 157 (195)
T COG3175 78 WRFRPVQREVYVRPGETNLIFYEAENLSDKPITGQATYNVAPGQAGAYFNKVECFCFTEQTLKPGETVEMPVVFFVDPDF 157 (195)
T ss_pred eeeEecCceeEeccCceEEEEEEEecCCCCCceeEEecccChhHhhhheeeeeEEEeeecccCCCCeEeccEEEEECccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCCCCCcEEEEEEEeeecCC
Q 023783 254 ETDPRMDGINNLILSYTFFKVNE 276 (277)
Q Consensus 254 ~~Dp~~~~v~tITLSYTFF~~~~ 276 (277)
.+||+|+||++||||||||++.+
T Consensus 158 ~~dPe~kdvk~iTLSYTFF~~~~ 180 (195)
T COG3175 158 ADDPEMKDVKTITLSYTFFPIRE 180 (195)
T ss_pred ccCcccCCCCeEEEEEEEEEccc
Confidence 99999999999999999999754
No 4
>KOG2540 consensus Cytochrome oxidase assembly factor COX11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-76 Score=527.50 Aligned_cols=250 Identities=55% Similarity=0.860 Sum_probs=202.4
Q ss_pred ceeeecccccchhhhhhhcccccccccCCceeeecCCccccccccccccccCCCCCCCCcccccccCccccccccCcchh
Q 023783 5 MSLSRLSSRTHILPLLQQSRCVKDVLWSNYKYTRVDTSCYASVWGLMPRCGYGSNMTNGYRKPQSFGSGCLWKSNSFSSF 84 (277)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 84 (277)
|.|.-.+| +.+.++.-+++.-.-. .+ -++-....|.+ +-|..+-- ++ -.++++.- .|+..-
T Consensus 1 ~~~c~a~r-~ri~~~g~n~r~~s~~--~p-~l~~r~g~~k~--~~lrs~~~-~s------~~~~s~~~------~s~~~~ 61 (269)
T KOG2540|consen 1 MSWCKACR-TRISSYGENLRRTSQY--PP-ILCSRHGACKS--HYLRSKRV-GS------LNSHSATA------KSMLDA 61 (269)
T ss_pred Ccccchhe-eeccCCCCcccchhcc--Cc-chhhhhhhhhh--hhhhheec-cc------ccchhhcc------cchhhh
Confidence 56777777 8888888777633221 11 12222344555 33333222 11 11111111 123233
Q ss_pred hhhcccccchhhhhhHHHHHHHHHHHHHHHhheechhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEE
Q 023783 85 QRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQF 164 (277)
Q Consensus 85 ~R~~~~~~~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F 164 (277)
-|.|+.++.++.++++++.|+.+++++|+|++||+||||++||+.|||||+++..+..-+ .+...+.+.+|.|+|+|
T Consensus 62 ~rqysr~~er~~k~rttlyYl~av~i~~lGltyAAvPlYR~fC~~Tg~GG~~~T~~~~~~---~~~~~~~~~~r~Irv~F 138 (269)
T KOG2540|consen 62 HRQYSRHSERETKSRTTLYYLTAVVIGALGLTYAAVPLYRLFCQATGYGGTVQTVEEKFD---KISNMPTVTERRIRVQF 138 (269)
T ss_pred hhhhhhhchhhhccceeeeehHHHHHHHhhhhhhhhHHHHHHHhhcCCCCchhhhhhhhh---hhhcCCcccceEEEEEe
Confidence 477888887888899999999999999999999999999999999999999985443322 22345788999999999
Q ss_pred EecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEecc
Q 023783 165 NADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMP 244 (277)
Q Consensus 165 ~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMP 244 (277)
+++++.+|+|+|.|+|++|.|+|||++++||+|+|+||+||+|+|+||++|++||.|||||||||||||.|.|||++|||
T Consensus 139 n~dV~~~l~Wkf~PqQrEiyV~PGEtALaFYta~N~sdkpIiGvstYni~P~~Aa~YFnKiqCFCFEEQ~L~pgE~vDmP 218 (269)
T KOG2540|consen 139 NSDVADSLQWKFTPQQREIYVLPGETALAFYTAENPSDKPIIGVSTYNITPGQAAVYFNKIQCFCFEEQKLNPGEQVDMP 218 (269)
T ss_pred cccccccCcccccccceEEEEcCCcceeeeEeccCCCCCCceeeEeeccCccHhhhheeceeEEeehhhccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcCCCCCcEEEEEEEeeecCC
Q 023783 245 VFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276 (277)
Q Consensus 245 V~F~IDPei~~Dp~~~~v~tITLSYTFF~~~~ 276 (277)
|+||||||+.+||+|++|++|+||||||+++.
T Consensus 219 VFFyIDPefa~DP~m~~id~i~LsYTFFea~~ 250 (269)
T KOG2540|consen 219 VFFYIDPEFATDPAMDGIDDILLSYTFFEAKY 250 (269)
T ss_pred eEEEeCcccccCcccccccceEEEEEEEEeec
Confidence 99999999999999999999999999999875
No 5
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=100.00 E-value=8.2e-75 Score=496.73 Aligned_cols=151 Identities=54% Similarity=1.011 Sum_probs=93.3
Q ss_pred chhhHHHHHHHhcCCceeeee-hhhHHHHhhccCCCcccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEE
Q 023783 119 AVPLYRRFCQATGYGGTVQRK-ETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTA 197 (277)
Q Consensus 119 ~VPLY~~FC~vTG~~Gtt~~~-~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a 197 (277)
+|||||+||++|||||||+.+ +..+. ...+++.+|+|+|+|+|+++++|||+|+|+|++|.|||||+++++|+|
T Consensus 1 ~VPLY~~fC~vTG~~Gtt~~~~~~~~~-----~~~~v~~~R~i~V~F~a~~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a 75 (152)
T PF04442_consen 1 LVPLYDVFCEVTGFNGTTQRAAEAAAA-----AAKQVDTSRTITVRFDANVNPGLPWEFKPEQRSVKVHPGETALVFYEA 75 (152)
T ss_dssp -------------------------TT-----T------S-EEEEEEEEEE-TTS-EEEE-S-SEEEEETT--EEEEEEE
T ss_pred CCchHHHHHHHhCCCCEeCcccccccc-----ccccccCCcEEEEEEEeecCCCCceEEEeeeeeEEeCCCCEEEEEEEE
Confidence 699999999999999999883 22111 123578999999999999999999999999999999999999999999
Q ss_pred EcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeeec
Q 023783 198 ENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKV 274 (277)
Q Consensus 198 ~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~~ 274 (277)
+|++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+|||||||++||++++|++||||||||++
T Consensus 76 ~N~s~~~i~g~A~~nV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~mPv~F~IDp~i~~d~~~~~v~~iTLSYTff~v 152 (152)
T PF04442_consen 76 TNPSDKPITGQAIPNVTPGEAGKYFNKIECFCFEEQTLAPGETVDMPVVFYIDPDIPEDPDMKDVKTITLSYTFFDV 152 (152)
T ss_dssp EE-SSS-EE---EEEE-SSS-STTECCS-TTS-S--EE-TT-EEEEEEEEEE-GGGGSSTTTTT--BEEEEEEE-S-
T ss_pred ECCCCCcEEEEEeeeECHHHhhhhccccceEeccCcCcCCCCeEEEEEEEEECCcccCCcccCCcCEEEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=86.81 E-value=1.9 Score=33.32 Aligned_cols=57 Identities=26% Similarity=0.333 Sum_probs=42.1
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccc-hhccccccccccccccccCCCCeEeccEEEE
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMK-AAVYFNKIQCFCFEEQRLLPGEQIDMPVFFY 248 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~-Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~ 248 (277)
.|..|+.....-.++|.+..+. -|.|.... -...| .+- ..+..|+||+++++-|.|.
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~----~f~v~~~~~~~~~~---~v~-~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPA----RFRVRQPESLSSFF---SVE-PPSGFLAPGESVELEVTFS 72 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCE----EEEEEeCCcCCCCE---EEE-CCCCEECCCCEEEEEEEEE
Confidence 5789999999999999999984 44443322 22222 222 2478999999999999998
No 7
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=83.72 E-value=1.4 Score=33.05 Aligned_cols=62 Identities=24% Similarity=0.380 Sum_probs=32.5
Q ss_pred ecCCCeeEEEEEEEcCCCCceEEEEe-Ccccccchh--ccccccccccccccccCCCCeEeccEEEEeCCCCC
Q 023783 185 VKPGESALAFYTAENRSSTPITGVST-YNVTPMKAA--VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 185 V~PGE~~l~fY~a~N~sd~pi~GqAv-ynVtP~~Ag--~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
|.|||...+...++|..+.++....+ -++ |.--. ..=..+. .|.|||++..-+..-+..+..
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~-------~l~pG~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVP-------SLPPGESVTVTFTVTVPADAA 65 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE---------B-TTSEEEEEEEEEE-TT--
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccc-------cCCCCCEEEEEEEEECCCCCC
Confidence 57999999999999999888654332 232 53221 1112222 899999999777777766654
No 8
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=77.04 E-value=5.3 Score=27.55 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=31.2
Q ss_pred EEEEcCCCCceEEEEeCcccccchhccccccccccc----cccccCCCCeEeccEEE
Q 023783 195 YTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF----EEQRLLPGEQIDMPVFF 247 (277)
Q Consensus 195 Y~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF----~eQ~L~pGE~vdMPV~F 247 (277)
|..+|.+++|+.=..+ +..|=|. ++.+|+|||+..|=|.|
T Consensus 2 F~~~N~g~~~L~I~~v-------------~tsCgCt~~~~~~~~i~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDV-------------QTSCGCTTAEYSKKPIAPGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEe-------------eEccCCEEeeCCcceECCCCEEEEEEEC
Confidence 7899999999875443 3457774 57889999999987765
No 9
>PRK13202 ureB urease subunit beta; Reviewed
Probab=74.29 E-value=9.9 Score=31.70 Aligned_cols=75 Identities=12% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
.|-+..+....|.+.+|..-.+.-.++|+.|+||---+=|...=...|.-|.--..+=+ +--+++|||+++..
T Consensus 2 ~PGei~~~~~~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 81 (104)
T PRK13202 2 IPGEIFYGSGDIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVG 81 (104)
T ss_pred CCceEecCCCCEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEE
Confidence 36677888889999999655567789999999997766666555444444443333322 34568899998887
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 82 LV 83 (104)
T PRK13202 82 LV 83 (104)
T ss_pred EE
Confidence 75
No 10
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex). This enzymex is an oligomeric membrane protein complex that is a component of respiratory and photosynthetic electron transfer chains. It couples the transfer of electrons from ubiquinol to cytochrome c with the generation of a protein gradient across the membrane []. This entry is associated with IPR017941 from INTERPRO, IPR004192 from INTERPRO and IPR015248 from INTERPRO. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0055114 oxidation-reduction process; PDB: 1ZRT_R 2QJY_R 2FYN_L 2QJK_O 2QJP_I 2YIU_F.
Probab=73.07 E-value=4.1 Score=28.45 Aligned_cols=28 Identities=25% Similarity=0.374 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHHHHHHhheechhhHH
Q 023783 97 KSRKMLLYLTALVFAMVGSTYAAVPLYR 124 (277)
Q Consensus 97 ~n~~~~~~l~~v~v~Mfgf~fA~VPLY~ 124 (277)
..||-.+.++..+++-.|.+.+++|+.+
T Consensus 9 ~~RRdFL~~at~~~gavG~~~~a~Pfv~ 36 (41)
T PF10399_consen 9 PTRRDFLTIATSAVGAVGAAAAAWPFVS 36 (41)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777788999999999965
No 11
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=71.85 E-value=14 Score=28.91 Aligned_cols=60 Identities=22% Similarity=0.321 Sum_probs=31.7
Q ss_pred cEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCC
Q 023783 158 REVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLP 237 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~p 237 (277)
+.|+|... .+.|.|. +++|++|+.+++. .+|.++.+ ....++. =..+..|.|
T Consensus 21 ~~v~I~~~-------~~~f~P~--~i~v~~G~~v~l~--~~N~~~~~-h~~~i~~----------------~~~~~~l~~ 72 (104)
T PF13473_consen 21 QTVTITVT-------DFGFSPS--TITVKAGQPVTLT--FTNNDSRP-HEFVIPD----------------LGISKVLPP 72 (104)
T ss_dssp ----------------EEEES---EEEEETTCEEEEE--EEE-SSS--EEEEEGG----------------GTEEEEE-T
T ss_pred cccccccc-------CCeEecC--EEEEcCCCeEEEE--EEECCCCc-EEEEECC----------------CceEEEECC
Confidence 45666543 3489996 8999999988865 46887775 4444433 112378999
Q ss_pred CCeEeccE
Q 023783 238 GEQIDMPV 245 (277)
Q Consensus 238 GE~vdMPV 245 (277)
||+..+-+
T Consensus 73 g~~~~~~f 80 (104)
T PF13473_consen 73 GETATVTF 80 (104)
T ss_dssp T-EEEEEE
T ss_pred CCEEEEEE
Confidence 99887665
No 12
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=64.43 E-value=14 Score=30.69 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=43.4
Q ss_pred EEEecCCCeeEEEEEEEcCCCCceEEE-------------EeCcccccch----hccccccccccccccccCCCCeEecc
Q 023783 182 EVRVKPGESALAFYTAENRSSTPITGV-------------STYNVTPMKA----AVYFNKIQCFCFEEQRLLPGEQIDMP 244 (277)
Q Consensus 182 ~v~V~PGE~~l~fY~a~N~sd~pi~Gq-------------AvynVtP~~A----g~YF~KieCFCF~eQ~L~pGE~vdMP 244 (277)
.+.|.||+...+...++|.+|++++-. ..|+-.-... ..-|.++-=.= .+-+|.|||+++.+
T Consensus 20 dL~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~~-~~Vtl~~~~sk~V~ 98 (121)
T PF06030_consen 20 DLKVKPGQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKIP-KEVTLPPNESKTVT 98 (121)
T ss_pred EEEeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccCC-cEEEECCCCEEEEE
Confidence 367899999999999999999998743 3333222111 11232222221 22799999999998
Q ss_pred EEEE
Q 023783 245 VFFY 248 (277)
Q Consensus 245 V~F~ 248 (277)
+..=
T Consensus 99 ~~i~ 102 (121)
T PF06030_consen 99 FTIK 102 (121)
T ss_pred EEEE
Confidence 8753
No 13
>PRK13203 ureB urease subunit beta; Reviewed
Probab=64.33 E-value=22 Score=29.57 Aligned_cols=74 Identities=20% Similarity=0.385 Sum_probs=53.3
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
.|-+..+....|.+.+|... +.-.++|+.|+||---+=|...=...|.=|.--..+=+ +--+++|||+++..
T Consensus 2 ~PGe~~~~~~~I~ln~gr~~-~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (102)
T PRK13203 2 IPGEYITADGEIELNAGRET-VTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVE 80 (102)
T ss_pred CCceEecCCCCEEeCCCCCE-EEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 36677888889999999655 56789999999997777666655555554444333332 44578899999887
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 81 LV 82 (102)
T PRK13203 81 LV 82 (102)
T ss_pred EE
Confidence 75
No 14
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=64.01 E-value=18 Score=35.65 Aligned_cols=69 Identities=23% Similarity=0.278 Sum_probs=49.5
Q ss_pred ccEEEecCCCeeEEEEE-EEcCCCCceEEEEeCcccccchh-cccccccccccccc--ccCCCCeEeccEEEE
Q 023783 180 QREVRVKPGESALAFYT-AENRSSTPITGVSTYNVTPMKAA-VYFNKIQCFCFEEQ--RLLPGEQIDMPVFFY 248 (277)
Q Consensus 180 q~~v~V~PGE~~l~fY~-a~N~sd~pi~GqAvynVtP~~Ag-~YF~KieCFCF~eQ--~L~pGE~vdMPV~F~ 248 (277)
.-....+|||.+.-.-. ++|.....|.=.=.-.-.+...+ .--..-+||=|+.. +|.|||+++++|.|-
T Consensus 238 ~l~Fe~~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~~~~~~~~~~~~~~F~Fd~~~gvilPGe~~~~~~~F~ 310 (426)
T PF14646_consen 238 RLTFECHPGERVSKEVVRLENNGTTAIYYSWRRVPFFKNFGSLFRAQDQRFYFDTSSGVILPGETRNFPFMFK 310 (426)
T ss_pred EEEEEcccCceeeEEEEEEecCCceEEEEEEEecccccccchhccccCCeEEEeCCCCEECCCceEEEEEEEe
Confidence 44567799999998888 99999888765433333322222 33344788888765 799999999999883
No 15
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=59.84 E-value=21 Score=29.63 Aligned_cols=74 Identities=18% Similarity=0.363 Sum_probs=46.0
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
+|-+..+....|.+.+|.. .+.-.++|+.|+||---+=|...=...+.=|.--.-+-+ +--+++|||+++..
T Consensus 1 iPGei~~~~~~I~lN~gr~-~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~ 79 (100)
T PF00699_consen 1 IPGEIILADGDIELNAGRE-RITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVE 79 (100)
T ss_dssp -TT-EE--SSEEETTTTSE-EEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEE
T ss_pred CCCeEEeCCCcEEecCCCc-EEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEE
Confidence 3667778888999999985 456799999999998877777766666665554444433 45678889888877
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 80 LV 81 (100)
T PF00699_consen 80 LV 81 (100)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 16
>PRK02710 plastocyanin; Provisional
Probab=59.25 E-value=69 Score=26.09 Aligned_cols=62 Identities=21% Similarity=0.326 Sum_probs=35.9
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCC
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPG 238 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pG 238 (277)
+++|+-.++ +-...|.| .+++|++|+++ .+ .|..+.+-. +++..++ =+..+++.++||
T Consensus 30 ~~~V~~~~~---~~~~~F~P--~~i~v~~Gd~V--~~--~N~~~~~H~------v~~~~~~-------~~~~~~~~~~pg 87 (119)
T PRK02710 30 TVEVKMGSD---AGMLAFEP--STLTIKAGDTV--KW--VNNKLAPHN------AVFDGAK-------ELSHKDLAFAPG 87 (119)
T ss_pred eEEEEEccC---CCeeEEeC--CEEEEcCCCEE--EE--EECCCCCce------EEecCCc-------cccccccccCCC
Confidence 555665443 22458998 57999999974 34 465433322 2222111 123456788999
Q ss_pred CeEe
Q 023783 239 EQID 242 (277)
Q Consensus 239 E~vd 242 (277)
|+.+
T Consensus 88 ~t~~ 91 (119)
T PRK02710 88 ESWE 91 (119)
T ss_pred CEEE
Confidence 9977
No 17
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=59.04 E-value=32 Score=28.60 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=51.1
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccc-------ccccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFC-------FEEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFC-------F~eQ~L~pGE~vdMP 244 (277)
.|-+..+....|++.+|... +.-.++|+.|+||---+=|...=...|.=|.--..+= =+--+++|||+++..
T Consensus 2 ~PGei~~~~~~I~ln~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (101)
T TIGR00192 2 IPGELQLAEGDITINEGRKT-VSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVE 80 (101)
T ss_pred CCceEecCCCCEEeCCCCcE-EEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 36677788889999999754 6678999999999766666555444444443333222 234578899998887
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 81 LV 82 (101)
T TIGR00192 81 LV 82 (101)
T ss_pred EE
Confidence 75
No 18
>TIGR02756 TraK_Ftype type-F conjugative transfer system secretin TraK. The TraK protein is predicted to interact with the TraV and TraB proteins as part of the scaffold which extends from the inner membrane, through the periplasm to the cell envelope and through which the F-type conjugative pilus passes. TraK is homologous to the P-type IV secretion system protein TrbG, the Ti-type protein VirB9 and the I-type TraN protein. The protein is related to the secretin family especially the HrcC subgroup of the type III secretion system. The protein is hypothesized to oligomerize to form a ring structure akin to other secretins.
Probab=58.16 E-value=13 Score=34.18 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=35.5
Q ss_pred CCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEec
Q 023783 188 GESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 188 GE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
.+..-.-|+++|.+++++.-.--==..|+..|.-|. .+.|.|||+.++
T Consensus 181 ~~l~g~~y~l~N~s~~~~~L~E~~F~~~gv~AVa~~--------~~~L~PGe~t~v 228 (232)
T TIGR02756 181 NHLKGERFELENKTNSPLELTESWFWQPGTRAVALS--------KPQLAPGETADL 228 (232)
T ss_pred CCcEEEEEEEEcCCCCCeEechHHhCCcCcEEEEec--------cCccCCCCEEEE
Confidence 355667899999999999865544455665555554 479999999875
No 19
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=58.01 E-value=66 Score=25.06 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=35.1
Q ss_pred CCeeEEEEEEEcCCCCceEEEEeCcccc-cchhcccccccccc-----ccccccCCCCeEeccEEEEeCCCCCCCcCCCC
Q 023783 188 GESALAFYTAENRSSTPITGVSTYNVTP-MKAAVYFNKIQCFC-----FEEQRLLPGEQIDMPVFFYIDPEFETDPRMDG 261 (277)
Q Consensus 188 GE~~l~fY~a~N~sd~pi~GqAvynVtP-~~Ag~YF~KieCFC-----F~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~ 261 (277)
++...+.+.++|.+++++.-.+. ...= ...+.-..--.=.. +..+.|+||++++-=++|-|..+-
T Consensus 35 ~~fv~v~v~v~N~~~~~~~~~~~-~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~-------- 105 (123)
T PF11611_consen 35 NKFVVVDVTVKNNGDEPLDFSPS-DFKLYDSDGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDD-------- 105 (123)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEGG-GEEEE-TT--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT---------
T ss_pred CEEEEEEEEEEECCCCcEEeccc-ceEEEeCCCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCC--------
Confidence 45567778888888877753211 1111 01110000000000 667899999999999999885543
Q ss_pred CcEEEEEE
Q 023783 262 INNLILSY 269 (277)
Q Consensus 262 v~tITLSY 269 (277)
+.++|.|
T Consensus 106 -~~~~l~~ 112 (123)
T PF11611_consen 106 -KPYTLEY 112 (123)
T ss_dssp -GG-EEEE
T ss_pred -ccEEEEE
Confidence 3477777
No 20
>cd03498 SQR_TypeB_2_TM Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. C. glutamicum SQR reduces low potential quinones such as menaquinone. SQR is also called succinate dehydrogenase (Sdh) or Complex II and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type B as they contain one transmembrane subunit and two heme groups. The heme and quinone binding sites reside in the transmembrane subunit. The transmembrane subunit of members of this subfamily is also called Sdh cytochrome b558 subunit based on the Bacillus subtilis protein. The structural arrangem
Probab=55.78 E-value=12 Score=33.71 Aligned_cols=45 Identities=16% Similarity=0.312 Sum_probs=33.7
Q ss_pred chhhhhcccccchhhhhhHHHHHHHHHHHHHHHhheechhhHHHH
Q 023783 82 SSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRF 126 (277)
Q Consensus 82 ~~~~R~~~~~~~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~F 126 (277)
-++++.+.+.--..++.++.+.++..++...+++||+++|+|=.|
T Consensus 163 hGl~s~~~t~G~~~~~~~~~~~~~~~~~~~~i~~gf~~~p~~~~~ 207 (209)
T cd03498 163 HGFWSAFQTLGLNNPRYRPALKAVGRVVAILIAGGFISIPLLILF 207 (209)
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666666655556677778888888888899999999998654
No 21
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=55.57 E-value=59 Score=27.20 Aligned_cols=60 Identities=25% Similarity=0.191 Sum_probs=43.8
Q ss_pred CCCeeEEEEEEEcCCCCceEEEE----eCc---ccccchhccccccccccc----cccccCCCCeEeccEE
Q 023783 187 PGESALAFYTAENRSSTPITGVS----TYN---VTPMKAAVYFNKIQCFCF----EEQRLLPGEQIDMPVF 246 (277)
Q Consensus 187 PGE~~l~fY~a~N~sd~pi~GqA----vyn---VtP~~Ag~YF~KieCFCF----~eQ~L~pGE~vdMPV~ 246 (277)
-+|..-+...++|.+++++.+-- +++ +....-..|++|..=|=- -+..|.|||+.+.-+.
T Consensus 60 ~~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~n~~~~~~~~~~~f~~~~~~i~~~L~~~e~~~f~~~ 130 (149)
T PF09624_consen 60 YSESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSGNKFKEIFYQQIPFVKKSIPIADNLKPGESKEFRFI 130 (149)
T ss_pred eccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccCchhhhhhccccchhccceeHHhhcCcccceeEEEE
Confidence 56777888999999999987643 344 667777888888776411 1334999999998554
No 22
>PRK13201 ureB urease subunit beta; Reviewed
Probab=55.51 E-value=36 Score=29.68 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=54.4
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
.|-+..+....|.+.+|-.. +.-.++|+.|+||---+=|...=...|.=|.--..+=+ +--+++|||+++..
T Consensus 2 iPGei~~~~~~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~ 80 (136)
T PRK13201 2 IPGEIITKSTEVEINNHHPE-TVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQ 80 (136)
T ss_pred CCceEecCCCCeEeCCCCCE-EEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEE
Confidence 46677888889999999655 56789999999997777666655555554444333332 45678999999998
Q ss_pred EEE
Q 023783 245 VFF 247 (277)
Q Consensus 245 V~F 247 (277)
++=
T Consensus 81 LV~ 83 (136)
T PRK13201 81 LVE 83 (136)
T ss_pred EEE
Confidence 873
No 23
>PF04222 DUF416: Protein of unknown function (DUF416); InterPro: IPR007338 This is a bacterial family of uncharacterised proteins.; PDB: 2Q9R_A 3F7C_A.
Probab=55.47 E-value=8.1 Score=34.95 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=18.9
Q ss_pred HHHHHhheechhhHHHHHHHhcCCc
Q 023783 110 FAMVGSTYAAVPLYRRFCQATGYGG 134 (277)
Q Consensus 110 v~Mfgf~fA~VPLY~~FC~vTG~~G 134 (277)
++|.+++==+-|=|.+||++||+|.
T Consensus 17 ~F~aaLcERM~PNY~lF~e~t~~gd 41 (191)
T PF04222_consen 17 AFMAALCERMYPNYQLFCEVTEFGD 41 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-S-
T ss_pred HHHHHHHHHhhhhHHHHHHHHCCCC
Confidence 3566666668899999999999986
No 24
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=51.78 E-value=51 Score=27.43 Aligned_cols=74 Identities=20% Similarity=0.398 Sum_probs=50.0
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccc-------cccccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCF-------CFEEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCF-------CF~eQ~L~pGE~vdMP 244 (277)
.|-+..+....|.+.+|-.. +.-.++|+.|+||---+=|...=...+.-|.--.-+ -=+--+++|||+++..
T Consensus 2 ~PGei~~~~~~I~lN~gr~~-~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~ 80 (101)
T cd00407 2 IPGEIILKEGDIELNAGREA-VTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVE 80 (101)
T ss_pred CCceEEeCCCCeEeCCCCCE-EEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEE
Confidence 46677888888999999554 566899999999976666655444444333322222 2234567899988887
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 81 LV 82 (101)
T cd00407 81 LV 82 (101)
T ss_pred EE
Confidence 75
No 25
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=51.55 E-value=56 Score=30.34 Aligned_cols=91 Identities=20% Similarity=0.335 Sum_probs=62.4
Q ss_pred ccccEEEEEEE-ecCCCC-----CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccc
Q 023783 155 VTTREVVVQFN-ADVADG-----MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCF 228 (277)
Q Consensus 155 d~~R~I~V~F~-A~v~~~-----lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCF 228 (277)
|..+-|+|.=- ...... .|-+..+....|.+.+|... +.-.++|+.|+||---+=|...=...+.=|.--..+
T Consensus 88 DGTkLVtvh~PI~~~~~~~~~al~PGei~~~~~~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~ 166 (208)
T PRK13192 88 DGTKLVTVHDPIRPAEGDLADALYPGEILPGDGEIELNAGRPA-VTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAY 166 (208)
T ss_pred CCCEEEEecCCcCCCCCchhhccCCCEEEcCCCCeeeCCCCCE-EEEEEEeCCCCceeeccccchhhcCchhhccHHHhc
Confidence 55666666421 111222 28999999999999999765 667899999999977776666555555555444444
Q ss_pred cc-------cccccCCCCeEeccEE
Q 023783 229 CF-------EEQRLLPGEQIDMPVF 246 (277)
Q Consensus 229 CF-------~eQ~L~pGE~vdMPV~ 246 (277)
=+ +--+++|||+++..++
T Consensus 167 G~RLdIpAGTavRFEPG~~k~V~LV 191 (208)
T PRK13192 167 GMRLDIPAGTAVRFEPGETKEVRLV 191 (208)
T ss_pred CcccccCCCCeEeECCCCeeEEEEE
Confidence 33 3457889999988776
No 26
>PRK13205 ureB urease subunit beta; Reviewed
Probab=50.80 E-value=44 Score=29.83 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=54.0
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
+|-++.+....|.+.+|... +.-.++|+.|+||---+=|...=...|.-|.--..+=+ +--+++|||+++..
T Consensus 2 iPGei~~~~g~IelN~GR~~-i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~ 80 (162)
T PRK13205 2 IPGEYILSSESLTGNVGREA-KTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVN 80 (162)
T ss_pred CCceEecCCCCeEeCCCCcE-EEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEE
Confidence 46677888889999999665 56789999999997766666555555544443333332 44578999999988
Q ss_pred EEE
Q 023783 245 VFF 247 (277)
Q Consensus 245 V~F 247 (277)
++=
T Consensus 81 LV~ 83 (162)
T PRK13205 81 LVA 83 (162)
T ss_pred EEE
Confidence 863
No 27
>PRK13204 ureB urease subunit beta; Reviewed
Probab=50.24 E-value=52 Score=29.36 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=56.3
Q ss_pred CCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEe
Q 023783 170 DGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQID 242 (277)
Q Consensus 170 ~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vd 242 (277)
..+|-++.+....|.+.+|... +.-.++|+.|+||---+=|...=...+.-|.--..+=+ +--+++|||+++
T Consensus 23 ~~~pGei~~~~~~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~ 101 (159)
T PRK13204 23 HRPVGGYVLAKDPIEINQGRPR-TTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKE 101 (159)
T ss_pred cCCCCeEEeCCCCeEeCCCCcE-EEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeE
Confidence 3578899999999999999765 56789999999997777766655555554443333322 445789999999
Q ss_pred ccEE
Q 023783 243 MPVF 246 (277)
Q Consensus 243 MPV~ 246 (277)
..++
T Consensus 102 V~LV 105 (159)
T PRK13204 102 VTLV 105 (159)
T ss_pred EEEE
Confidence 8887
No 28
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.12 E-value=39 Score=25.01 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=33.3
Q ss_pred EEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeC
Q 023783 183 VRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYID 250 (277)
Q Consensus 183 v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~ID 250 (277)
-.+.+|+...+...++|..+.+..+.-+ . .|...-..==.+-+.|+|||+....+.+-.+
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~~~~~~v-~-------~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTADAENVTV-R-------LYLDGNSVSTVTIPSLAPGESETVTFTWTPP 72 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS-BEEEEE-E-------EEETTEEEEEEEESEB-TTEEEEEEEEEE-S
T ss_pred CcccCCCEEEEEEEEEECCCCCCCCEEE-E-------EEECCceeccEEECCcCCCcEEEEEEEEEeC
Confidence 3568899999999999998877443222 1 1221111100001688999998766555554
No 29
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=49.87 E-value=1.1e+02 Score=23.94 Aligned_cols=62 Identities=16% Similarity=0.296 Sum_probs=32.1
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEec
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
...|.|. .+.|++|+++ .+ +|....+=.-.+.-.=.|..+.....++. -+...++|||+.++
T Consensus 11 ~~~F~P~--~i~v~~G~~V--~~--~N~~~~~H~~~~~~~~~~~~~~~~~~~~~---~~~~~~~pG~t~~~ 72 (99)
T TIGR02656 11 ALVFEPA--KISIAAGDTV--EW--VNNKGGPHNVVFDEDAVPAGVKELAKSLS---HKDLLNSPGESYEV 72 (99)
T ss_pred ceeEeCC--EEEECCCCEE--EE--EECCCCCceEEECCCCCccchhhhccccc---ccccccCCCCEEEE
Confidence 4589995 7899999985 33 36543332212211112332211111100 14467899999877
No 30
>COG3068 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.97 E-value=12 Score=33.80 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.1
Q ss_pred HHHHHhheechhhHHHHHHHhcCCc
Q 023783 110 FAMVGSTYAAVPLYRRFCQATGYGG 134 (277)
Q Consensus 110 v~Mfgf~fA~VPLY~~FC~vTG~~G 134 (277)
-+|-+++=-+-|=|.+||+.|+++.
T Consensus 20 TFmAcLCERM~PNy~~FCq~~e~~~ 44 (194)
T COG3068 20 TFMACLCERMYPNYAMFCQQTEFGD 44 (194)
T ss_pred HHHHHHHHHhCccHHHHHHHhcccc
Confidence 3667777788999999999999983
No 31
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=46.97 E-value=68 Score=30.01 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=35.2
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITG 207 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~G 207 (277)
.+++++......+.||.|+-+.+ .++..+..-.+.|.|+|.+|+++.-
T Consensus 109 ~v~l~~~~~~~~gyP~~~~~~v~-y~L~~~~~L~i~~~~~n~~~~~~P~ 156 (300)
T PRK15172 109 SVTLTAFLPPSYGYPFMLASQVI-YSLDAATGLSVEIASQNIGDVPAPY 156 (300)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEE-EEEccCCeEEEEEEEEECCCCceee
Confidence 46666654335679999998654 3455557889999999999988753
No 32
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=46.24 E-value=62 Score=29.29 Aligned_cols=47 Identities=21% Similarity=0.478 Sum_probs=33.9
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGV 208 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~Gq 208 (277)
.|++++..+.... ||.|.-... .++. |+...+.|.++|.+++++.=.
T Consensus 93 ~v~l~l~~~~~~~-P~~~~~~~~-y~L~-~~~L~i~~~~~N~~~~~~~~~ 139 (273)
T cd09021 93 SAELQLDHEADDP-PWAYRAEQR-FHLA-GDGLSITLSVTNRGDRPMPAG 139 (273)
T ss_pred eEEEEEecCCCCC-CEeEEEEEE-EEEc-CCCEEEEEEEEECCCCCceee
Confidence 5777777654444 999976643 3444 688899999999999877543
No 33
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=44.92 E-value=67 Score=29.35 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=34.4
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
.|+.++......+.||.|+-... .++. ++...+.|.++|.+|+++.
T Consensus 90 ~v~l~l~~~~~~~yP~~~~~~~~-y~L~-~~~L~i~~~v~N~~~~~~p 135 (284)
T cd09022 90 SVTLRTRIPPQPGYPFTLELTVT-YELD-DDGLTVTLTATNVGDEPAP 135 (284)
T ss_pred eEEEEEEeCCccCCCceEEEEEE-EEEc-CCcEEEEEEEEeCCCCCeE
Confidence 47777776656778999987543 3333 4668999999999998874
No 34
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=44.63 E-value=68 Score=29.54 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=36.5
Q ss_pred cEEEEEEEecC--CCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEE
Q 023783 158 REVVVQFNADV--ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVS 209 (277)
Q Consensus 158 R~I~V~F~A~v--~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqA 209 (277)
..|+.++..+. ..+.||.|+-+.+-. +. +....+.|+++|.+++++.=..
T Consensus 87 ~~v~l~l~~~~~~~~~~P~~~~~~~~y~-L~-~~~L~i~~~v~N~~~~~~p~~~ 138 (288)
T cd09024 87 DSVTFELTDNEETLKVYPFDFELRVTYT-LE-GNTLKVTYEVKNPDDKTMPFSI 138 (288)
T ss_pred CEEEEEEccCcchhhcCCeEEEEEEEEE-Ee-CCEEEEEEEEEcCCCCceEEEE
Confidence 35777776542 357899999875433 44 7899999999999999885443
No 35
>PRK13198 ureB urease subunit beta; Reviewed
Probab=44.60 E-value=71 Score=28.49 Aligned_cols=78 Identities=13% Similarity=0.254 Sum_probs=54.6
Q ss_pred CCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccc-------ccccccCCCCeE
Q 023783 169 ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFC-------FEEQRLLPGEQI 241 (277)
Q Consensus 169 ~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFC-------F~eQ~L~pGE~v 241 (277)
+..+|-++.+....|.+.+|-.. +.-.++|+.|+||---+=|...=...|.=|.--.-+= =+--+++|||++
T Consensus 27 ~~~~pGei~~~~g~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k 105 (158)
T PRK13198 27 QNTPLGGLVLAETPITFNENKPV-TKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDET 105 (158)
T ss_pred ccCCCceEEeCCCCeEeCCCCcE-EEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCee
Confidence 44578999999999999999643 5668999999999766666554444444333222222 234578999999
Q ss_pred eccEEE
Q 023783 242 DMPVFF 247 (277)
Q Consensus 242 dMPV~F 247 (277)
+..++=
T Consensus 106 ~V~LV~ 111 (158)
T PRK13198 106 EVPLIP 111 (158)
T ss_pred EEEEEE
Confidence 988873
No 36
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=43.98 E-value=63 Score=27.07 Aligned_cols=66 Identities=17% Similarity=0.430 Sum_probs=45.4
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccccc---------------ccC
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQ---------------RLL 236 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ---------------~L~ 236 (277)
.|-++.+...+|++..|-....-= +.|+.|+||---+-|...=... +-||+.+ +++
T Consensus 2 iPGe~~~~~g~IelN~gr~~~~i~-V~NtGDRPIQVGSHfHF~EvN~--------aL~FDR~~a~G~RLdIpagTAVRFE 72 (106)
T COG0832 2 IPGEIILASGDIELNAGRPTVTIE-VANTGDRPIQVGSHFHFFEVNR--------ALSFDREKAYGMRLDIPAGTAVRFE 72 (106)
T ss_pred CCceeEecCccEEEeCCCcceEEE-EeecCCCceEeecceeehhhCc--------ceeechhhhcceEecccCCceEeeC
Confidence 467788888999998887766554 9999999986544444333332 4555544 567
Q ss_pred CCCeEeccEE
Q 023783 237 PGEQIDMPVF 246 (277)
Q Consensus 237 pGE~vdMPV~ 246 (277)
|||+++..++
T Consensus 73 PG~~k~V~LV 82 (106)
T COG0832 73 PGDEKEVELV 82 (106)
T ss_pred CCCccEEEEE
Confidence 8888777665
No 37
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=40.68 E-value=2.1e+02 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.0
Q ss_pred echhhHHHHHHHhcCCcee
Q 023783 118 AAVPLYRRFCQATGYGGTV 136 (277)
Q Consensus 118 A~VPLY~~FC~vTG~~Gtt 136 (277)
.+-|+|+..|+..|.....
T Consensus 28 ~~~~~~~~~C~~~gc~v~~ 46 (149)
T PF11906_consen 28 QLRPLLEAACEVLGCPVPP 46 (149)
T ss_pred chhHHHHHhHHhcCCCCCC
Confidence 5779999999999987754
No 38
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=39.28 E-value=1.2e+02 Score=26.76 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=36.2
Q ss_pred cEEEEEEEecCCC-CCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEe
Q 023783 158 REVVVQFNADVAD-GMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVST 210 (277)
Q Consensus 158 R~I~V~F~A~v~~-~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAv 210 (277)
-.|++++..+... +.||.|+-+.+ .++.. ....+.|.++|.+++++.=...
T Consensus 94 ~~v~l~~~~~~~~~~~P~~~~l~~t-y~L~~-~~L~i~~~v~N~~~~~~p~~~g 145 (284)
T cd01081 94 ASVTLSYDLNDGPGGYPFPLELTVT-YTLDA-DTLTITFTVTNLGDEPMPFGLG 145 (284)
T ss_pred cEEEEEEEeCCCCCCCCEEEEEEEE-EEEeC-CeEEEEEEEEeCCCCCcceeee
Confidence 3577777654433 47999987654 45553 7899999999999987754433
No 39
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=39.26 E-value=75 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=31.2
Q ss_pred ccEEEEEEEecCCCCCCeE-EEcccc----E-EEecCCCeeEEEEEEEcCCCCceE
Q 023783 157 TREVVVQFNADVADGMPWK-FIPTQR----E-VRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 157 ~R~I~V~F~A~v~~~lPW~-F~P~q~----~-v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
.-..+|+|..+ +|=..+ |..... . =..++|+...+.|.-.|+++-.+.
T Consensus 60 ~y~~~v~y~~~--~G~~~~~~~~~~~~~~~~~~~~~~G~~V~V~Y~P~~P~~~~l~ 113 (148)
T PF12158_consen 60 SYRPVVEYTYQ--DGRTYSRFYSGSDNFGSYWPKYPIGDTVTVYYNPNNPEEARLE 113 (148)
T ss_pred EEEEEEEEEEC--CCcEEEEeccCCcccccCCccCCCcCEEEEEECCcCCCeEEEe
Confidence 34566888877 333444 555411 1 126699999999999999984443
No 40
>PRK13986 urease subunit alpha; Provisional
Probab=38.26 E-value=1.1e+02 Score=28.67 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=59.8
Q ss_pred ccccEEEEEEE-ecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccc----
Q 023783 155 VTTREVVVQFN-ADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFC---- 229 (277)
Q Consensus 155 d~~R~I~V~F~-A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFC---- 229 (277)
|..+-|+|.=- .....-.|-++.+....|.+.+|-. .+.-.++|+.|+||---+=|...=...+.-|.--.-+=
T Consensus 89 DGTkLVtvh~PI~~~~~~~PGe~~~~~~~I~lN~gr~-~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLd 167 (225)
T PRK13986 89 DGTKLVTVHTPIEANGKLVPGELFLKDEDITINAGKK-AVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLD 167 (225)
T ss_pred CCCEEEEeCCCcCCCCCCCCceEecCCCCeecCCCCc-EEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccc
Confidence 45566666311 1222246999999999999999974 35678999999999766666554444444333222221
Q ss_pred ---ccccccCCCCeEeccEEE
Q 023783 230 ---FEEQRLLPGEQIDMPVFF 247 (277)
Q Consensus 230 ---F~eQ~L~pGE~vdMPV~F 247 (277)
=+--+++|||+++..++=
T Consensus 168 IpAGTavRFEPG~~k~V~LV~ 188 (225)
T PRK13986 168 IASGTAVRFEPGEEKSVELID 188 (225)
T ss_pred cCCCCeEeECCCCeeEEEEEE
Confidence 234578899999988763
No 41
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=38.22 E-value=75 Score=29.56 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=35.5
Q ss_pred cCCCeeEEEEEEEcCCCCceEEEEe-----------CcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCC
Q 023783 186 KPGESALAFYTAENRSSTPITGVST-----------YNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 186 ~PGE~~l~fY~a~N~sd~pi~GqAv-----------ynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
.+|....+...++|.+++|...|+- +-|+|. -.+|+||++..+=+.+- ...+|
T Consensus 39 y~~~~k~~sl~v~N~~~~pyLvQsWvd~~~~~~~~pFivtPP---------------lfRlep~~~~~lRI~~~-~~~LP 102 (237)
T PRK15224 39 YHAGTAGATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPP---------------LFRLEANQQSQLRIVRT-GGDMP 102 (237)
T ss_pred EeCCCcEEEEEEEcCCCCcEEEEEEEeCCCCCccCCEEECCC---------------eEEECCCCceEEEEEEC-CCCCC
Confidence 3444456666677777777766663 233332 24788888888877754 66677
Q ss_pred CCc
Q 023783 255 TDP 257 (277)
Q Consensus 255 ~Dp 257 (277)
+|.
T Consensus 103 ~DR 105 (237)
T PRK15224 103 TDR 105 (237)
T ss_pred Cce
Confidence 763
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=37.88 E-value=88 Score=24.40 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=26.2
Q ss_pred cccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEE
Q 023783 154 TVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAE 198 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~ 198 (277)
+....+|+|.|..+....--+.+.-...+..+.|||+..+.|...
T Consensus 39 v~~G~~v~l~~~N~~~~~h~~~i~~~~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 39 VKAGQPVTLTFTNNDSRPHEFVIPDLGISKVLPPGETATVTFTPL 83 (104)
T ss_dssp EETTCEEEEEEEE-SSS-EEEEEGGGTEEEEE-TT-EEEEEEEE-
T ss_pred EcCCCeEEEEEEECCCCcEEEEECCCceEEEECCCCEEEEEEcCC
Confidence 345677899987544443445555555567899999887766443
No 43
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=36.94 E-value=1.7e+02 Score=27.14 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=49.6
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEe--Ccccccchhcccccc--cccccc---ccccCCCCeEeccEEEEeCCCCCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVST--YNVTPMKAAVYFNKI--QCFCFE---EQRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAv--ynVtP~~Ag~YF~Ki--eCFCF~---eQ~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+..||+-.++--+.|.++.+|.+..+ =-.||.+. .++ .+---+ ...|.||+..|.-|.|=|.-.=
T Consensus 9 ~iylGEtF~~~l~~~N~s~~~v~~v~ikvemqT~s~~----~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE~G--- 81 (249)
T PF06159_consen 9 SIYLGETFSCYLSVNNDSNKPVRNVRIKVEMQTPSQS----LRLPLSDNENSDSPVASLAPGESLDFIVSHELKELG--- 81 (249)
T ss_pred CEeecCCEEEEEEeecCCCCceEEeEEEEEEeCCCCC----ccccCCCCccccccccccCCCCeEeEEEEEEeeecC---
Confidence 357899999999999999999977654 23455442 111 111111 2359999999999998775221
Q ss_pred cCCCCCcEEEEEEE
Q 023783 257 PRMDGINNLILSYT 270 (277)
Q Consensus 257 p~~~~v~tITLSYT 270 (277)
.++=..+.||+
T Consensus 82 ---~h~L~c~VsY~ 92 (249)
T PF06159_consen 82 ---NHTLVCTVSYT 92 (249)
T ss_pred ---ceEEEEEEEEe
Confidence 23445555665
No 44
>PRK15246 fimbrial assembly chaperone StbE; Provisional
Probab=36.60 E-value=86 Score=28.94 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=30.3
Q ss_pred CeeEEEEEEEcCCCCceEEEE----------------eCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783 189 ESALAFYTAENRSSTPITGVS----------------TYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 189 E~~l~fY~a~N~sd~pi~GqA----------------vynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe 252 (277)
....+...++|.+++|...|+ -+-|+|.. .+|+||++..+=+.+.=+..
T Consensus 24 ~~~~~sv~l~N~~~~p~LvQsWvd~~~~~~~p~~~~~pFivtPPl---------------frl~~~~~~~lRI~~~~~~~ 88 (233)
T PRK15246 24 DDVAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPV---------------FKMQPGELRTLRLLLSSRQQ 88 (233)
T ss_pred CCceEEEEEEeCCCCcEEEEEEEeCCCCccCcccccCcEEECCcc---------------eEECCCCceEEEEEECCCCC
Confidence 334555666777777777776 23333332 35777777776666432345
Q ss_pred CCCC
Q 023783 253 FETD 256 (277)
Q Consensus 253 i~~D 256 (277)
+|+|
T Consensus 89 LP~D 92 (233)
T PRK15246 89 LATD 92 (233)
T ss_pred CCCC
Confidence 6655
No 45
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=36.37 E-value=43 Score=30.02 Aligned_cols=47 Identities=23% Similarity=0.219 Sum_probs=33.6
Q ss_pred CeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEec
Q 023783 189 ESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 189 E~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
+....-|+++|.+++++.----==..|+..|..| +...|.|||+.++
T Consensus 186 ~l~~~~y~v~N~~~~~v~l~E~~f~~~~v~AVa~--------~~~~L~PGe~t~v 232 (234)
T PF06586_consen 186 GLRGEVYRVTNTSDQPVELDERDFYSPGVRAVAL--------WPPTLAPGESTEV 232 (234)
T ss_pred ceEEEEEEEEeCCCCCEEecHHHhCCCCcEEEEe--------cccccCCCCEEEE
Confidence 5667789999999998875433333466666655 4558999999764
No 46
>PF06475 Glycolipid_bind: Putative glycolipid-binding; InterPro: IPR009467 This family consists of several hypothetical bacterial proteins. The function of this family is unknown.; PDB: 2H1T_A.
Probab=35.95 E-value=51 Score=29.44 Aligned_cols=54 Identities=19% Similarity=0.218 Sum_probs=34.2
Q ss_pred ccccchhcccccccccccccc------ccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeee
Q 023783 213 VTPMKAAVYFNKIQCFCFEEQ------RLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273 (277)
Q Consensus 213 VtP~~Ag~YF~KieCFCF~eQ------~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~ 273 (277)
..|.-.|.-.-.|.+==|+.- -|..||.+++||.|+==|++- |..++.+||--+
T Consensus 85 ~~~~l~G~~DvDl~~sPftNtLPIRRL~L~~g~~~~i~vayv~~p~l~-------v~~~~Q~Yt~l~ 144 (179)
T PF06475_consen 85 PRPDLDGCLDVDLGFSPFTNTLPIRRLGLAVGESAEIPVAYVDLPDLT-------VTPAPQRYTRLA 144 (179)
T ss_dssp B-GGGTT--EEEEET-GGGGHHHHHHH---TT-EEEEEEEEEETTTT---------EEEEEEEEEEE
T ss_pred CccCcCCCEEEeeeeCccccchhhcccCCCCCCeEEEEEEEEECCCce-------EEEeeEEEEECC
Confidence 566666665556665555542 467899999999999888875 999999999643
No 47
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=35.17 E-value=94 Score=28.59 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=16.7
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+|+||++..+=+.+ +...+|+|
T Consensus 77 fRl~p~~~~~lRI~~-~~~~LP~D 99 (226)
T PRK15218 77 IRVAANSGQQLKIKK-LANNLPGD 99 (226)
T ss_pred EEECCCCceEEEEEE-CCCCCCcc
Confidence 478888888877774 46667776
No 48
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=34.84 E-value=97 Score=28.32 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=16.3
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+|+|||+..+=|.+ .++.+|+|
T Consensus 75 ~rl~p~~~q~lRI~~-~~~~LP~D 97 (226)
T PRK15295 75 FRLDAGQKNSIRVIR-SGAPLPAD 97 (226)
T ss_pred EEECCCCceEEEEEE-CCCCCCCC
Confidence 367888888877664 56667776
No 49
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=34.37 E-value=3.1e+02 Score=27.31 Aligned_cols=103 Identities=23% Similarity=0.225 Sum_probs=68.3
Q ss_pred ccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCccc------ccchhccccccccccc
Q 023783 157 TREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVT------PMKAAVYFNKIQCFCF 230 (277)
Q Consensus 157 ~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVt------P~~Ag~YF~KieCFCF 230 (277)
.+.+++.+..+.... =.|.-.+....+.||++..+.+.++|+..-+..+.-+.-.. |-.-+.+ =+
T Consensus 137 ~~~~t~~~~~~~~~~--~~~~v~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~i~~~~~-------~~ 207 (500)
T COG1361 137 TVEVTIYVEVDVPVI--ESFEVVSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYLGPIYSAND-------TP 207 (500)
T ss_pred EeeeeEEEEEeeccc--ceeEEecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCcceecccccccc-------ce
Confidence 445555555444322 22344455677899999999999999999888877665533 2111111 12
Q ss_pred cccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeee
Q 023783 231 EEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 273 (277)
Q Consensus 231 ~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~ 273 (277)
.--.|.|||++.....++.+.+. ++ +.-+|.+.++.-+
T Consensus 208 ~i~~l~p~es~~v~f~v~~~~~a-~~----g~y~i~i~i~~~~ 245 (500)
T COG1361 208 YIGALGPGESVNVTFSVYAGSNA-EP----GTYTINLEITYKD 245 (500)
T ss_pred eeeeeCCCceEEEEEEEEeecCC-CC----ccEEEEEEEEEec
Confidence 22358999999999999999876 32 6777777777654
No 50
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=33.24 E-value=1.1e+02 Score=28.40 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.7
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+|+||++..+=+.+ +...+|+|
T Consensus 83 frl~p~~~~~lRI~~-~~~~LP~D 105 (234)
T PRK15192 83 FMLSARQENSMRVVY-TGAPLPAD 105 (234)
T ss_pred EEECCCCceEEEEEE-CCCCCCCc
Confidence 468888888887765 46667776
No 51
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=31.91 E-value=2.6e+02 Score=22.23 Aligned_cols=75 Identities=19% Similarity=0.091 Sum_probs=42.6
Q ss_pred EccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc--ccccCCCCeEeccEEEEeCCCCC
Q 023783 177 IPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE--EQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 177 ~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~--eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
......+.+..++ ..+.+.++|.+++++.-|+...=... ..--.+..-|=+. .-+|+|||+..+=| +..+.++
T Consensus 3 ~i~~trii~~~~~-~~~~i~v~N~~~~~~~vq~~v~~~~~--~~~~~~~~~~~vsPp~~~L~pg~~q~vRv--~~~~~~~ 77 (122)
T PF00345_consen 3 QISPTRIIFNESQ-RSASITVTNNSDQPYLVQVWVYDQDD--EDEDEPTDPFIVSPPIFRLEPGESQTVRV--YRGSKLP 77 (122)
T ss_dssp EESSSEEEEETTS-SEEEEEEEESSSSEEEEEEEEEETTS--TTSSSSSSSEEEESSEEEEETTEEEEEEE--EECSGS-
T ss_pred EEccEEEEEeCCC-CEEEEEEEcCCCCcEEEEEEEEcCCC--cccccccccEEEeCCceEeCCCCcEEEEE--EecCCCC
Confidence 3445566777655 47899999999999999987643111 0001111122222 23577777776655 3355555
Q ss_pred CC
Q 023783 255 TD 256 (277)
Q Consensus 255 ~D 256 (277)
.|
T Consensus 78 ~~ 79 (122)
T PF00345_consen 78 ID 79 (122)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 52
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=31.16 E-value=1.7e+02 Score=21.42 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=34.2
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCccccc
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPM 216 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~ 216 (277)
+....-....-.+.|||+......++|..+.+..+..+-..-|.
T Consensus 25 ~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~ 68 (76)
T PF01345_consen 25 DLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPA 68 (76)
T ss_pred CEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCC
Confidence 34444444556789999999999999999999998877666654
No 53
>TIGR02046 sdhC_b558_fam succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family. This family consists of the succinate dehydrogenase subunit C of Bacillus subtilis, designated cytochrome b-558, and related sequences that include a fumarate reductase subunit C. This subfamily is only weakly similar to the main group of succinate dehydrogenase cytochrome b subunits described by Pfam model pfam01127.
Probab=30.94 E-value=49 Score=30.02 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=31.4
Q ss_pred chhhhhcccccchhhhhhHHHHHHHHHHHHHHHhheechhhHHHH
Q 023783 82 SSFQRHYASHASTEQKSRKMLLYLTALVFAMVGSTYAAVPLYRRF 126 (277)
Q Consensus 82 ~~~~R~~~~~~~~~~~n~~~~~~l~~v~v~Mfgf~fA~VPLY~~F 126 (277)
-++.+.+.+.--..++++..+..+..++..+++.+|+++|++-++
T Consensus 167 hGl~s~~~t~G~~~~~~~~~~~~~~~~~~~~i~~gf~~ip~~~~~ 211 (214)
T TIGR02046 167 HGLWSAAQTLGLNVTPRSQRIKTISNVVALVIFGGFSAVPLKFIL 211 (214)
T ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655555566666666667778888899999998765
No 54
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=29.96 E-value=1.2e+02 Score=28.41 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=40.8
Q ss_pred EccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc--cccccCCCCeEeccEEEEeCCCCC
Q 023783 177 IPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF--EEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 177 ~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF--~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
......| |-+|+...+...+.|.+++|...|+--.=...+. +.- |== -=.+|+||++..+=|.+ ++..+|
T Consensus 43 ~l~~TRv-Iy~~~~~~~sl~i~N~~~~p~LvQsWvd~~~~~~-----~~p-FiVtPPLfRLep~~~~~lRIi~-~~~~LP 114 (246)
T PRK15233 43 RLGTTRV-IYKEDAPSTSFWIMNEKEYPILVQTQVYNDDKSS-----KAP-FIVTPPILKVESNARTRLKVIP-TSNLFN 114 (246)
T ss_pred EeCceEE-EEeCCCcEEEEEEEcCCCCcEEEEEEEecCCCCc-----cCC-EEECCCeEEECCCCceEEEEEE-CCCCCC
Confidence 3344444 3455557788888998888888888432111000 000 000 12367888887777765 466677
Q ss_pred CC
Q 023783 255 TD 256 (277)
Q Consensus 255 ~D 256 (277)
+|
T Consensus 115 ~D 116 (246)
T PRK15233 115 KN 116 (246)
T ss_pred cC
Confidence 76
No 55
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=29.80 E-value=2.3e+02 Score=25.52 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=44.2
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccE-EEec-CCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccccc
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQRE-VRVK-PGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQ 233 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~-v~V~-PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ 233 (277)
.+..++++|... . ..|+|=|-- +.+. +|+...=.|.+.|..+..-.-..+=.+..+..+.|++
T Consensus 16 t~~v~~l~l~~~----~-~~~~pGQfv~l~~~~~g~~~~R~ySias~p~~~~l~~~ik~~~~G~~S~~L~---------- 80 (248)
T PRK10926 16 TDALFSLTVHAP----V-DPFTAGQFTKLGLEIDGERVQRAYSYVNAPDNPDLEFYLVTVPEGKLSPRLA---------- 80 (248)
T ss_pred CCCeEEEEEeCC----C-CCCCCCCEEEEEEecCCcEEEeeecccCCCCCCeEEEEEEEeCCCCcChHHH----------
Confidence 346777777531 1 156777654 3332 5666666777776543322222222222344444432
Q ss_pred ccCCCCeEec--cE--EEEeCCC
Q 023783 234 RLLPGEQIDM--PV--FFYIDPE 252 (277)
Q Consensus 234 ~L~pGE~vdM--PV--~F~IDPe 252 (277)
.|++|+++++ |. .|.+|++
T Consensus 81 ~l~~Gd~v~i~gp~~g~f~l~~~ 103 (248)
T PRK10926 81 ALKPGDEVQVVSEAAGFFVLDEV 103 (248)
T ss_pred hCCCCCEEEEecCCCcceEccCC
Confidence 3899999988 65 4556643
No 56
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=29.22 E-value=1.3e+02 Score=28.07 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=16.2
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+|+||++..+=+.+ +...+|+|
T Consensus 92 fRl~p~~~~~lRI~~-~~~~LP~D 114 (242)
T PRK15253 92 ARVAAESGQQIKIKK-MPNSLPDN 114 (242)
T ss_pred EEECCCCceEEEEEE-CCCCCCcc
Confidence 478888888877764 45567766
No 57
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=28.83 E-value=1.4e+02 Score=27.48 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=16.7
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
.+|+||++..+=|.+ .+..+|+|
T Consensus 77 frl~p~~~q~lRI~~-~~~~LP~D 99 (229)
T PRK15211 77 FKVRPKEKQIIRIMK-TDSALPKD 99 (229)
T ss_pred EEECCCCceEEEEEE-CCCCCCCC
Confidence 468888888877764 56667776
No 58
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=28.72 E-value=94 Score=31.28 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=29.3
Q ss_pred cCCCeeEEEEEEEcCCCCceEEEE---------eCcccccchh---cccccccccc-ccccccCCCCeEeccEE
Q 023783 186 KPGESALAFYTAENRSSTPITGVS---------TYNVTPMKAA---VYFNKIQCFC-FEEQRLLPGEQIDMPVF 246 (277)
Q Consensus 186 ~PGE~~l~fY~a~N~sd~pi~GqA---------vynVtP~~Ag---~YF~KieCFC-F~eQ~L~pGE~vdMPV~ 246 (277)
.||-+..+...++|++|+|+.=.- -+.|. .... .+.-..+--- -...+++|||++++-|.
T Consensus 260 vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~-~~~~~~P~~l~A~~gL~vs~~~pI~PGETrtl~V~ 332 (381)
T PF04744_consen 260 VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVP-TDDPDYPDELLAERGLSVSDNSPIAPGETRTLTVE 332 (381)
T ss_dssp SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT--SS-S---TTTEETT-EEES--S-B-TT-EEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccc-cCCCCCchhhhccCcceeCCCCCcCCCceEEEEEE
Confidence 577777888899999999886432 11111 0011 1111111112 24459999999998763
No 59
>PF08737 Rgp1: Rgp1; InterPro: IPR014848 Rgp1 forms heterodimer with Ric1 (IPR009771 from INTERPRO) which associates with Golgi membranes and functions as a guanyl-nucleotide exchange factor [].
Probab=27.98 E-value=83 Score=31.35 Aligned_cols=41 Identities=22% Similarity=0.429 Sum_probs=32.4
Q ss_pred ccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEe
Q 023783 228 FCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTF 271 (277)
Q Consensus 228 FCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTF 271 (277)
-=|.+.+|.|||++..=+.|-+-.++|- .-+ =+.|..+|.+
T Consensus 108 iLf~dl~L~pge~k~f~~~~~lP~~lPP--sy~-g~~i~~~Y~l 148 (415)
T PF08737_consen 108 ILFSDLRLAPGESKSFHFSFTLPKDLPP--SYR-GKAIKISYSL 148 (415)
T ss_pred eEEEeeEECCCCcEEEEEEEeCCCCCCC--CCc-CcEEEEEEEE
Confidence 4578999999999999999999888874 344 4667777765
No 60
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=27.15 E-value=1.2e+02 Score=23.64 Aligned_cols=59 Identities=22% Similarity=0.104 Sum_probs=34.6
Q ss_pred ecCCCeeEEEEEEEcCCCCceEE-----EEeCcccccchhccccccccccccccccCCCCeEeccEEE
Q 023783 185 VKPGESALAFYTAENRSSTPITG-----VSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFF 247 (277)
Q Consensus 185 V~PGE~~l~fY~a~N~sd~pi~G-----qAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F 247 (277)
+..|+...+.-..+|++++++.. -|.----++.-..-+.+ -...-+|+|||+....+.+
T Consensus 11 ~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~----~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 11 PVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKK----EKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp EBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEE----EEEEEEE-TTEEEEEEEEE
T ss_pred ccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeE----EEcceeeCCCCEEEEEEEE
Confidence 46899999999999999999554 11111112221111111 2355689999999887765
No 61
>PF06483 ChiC: Chitinase C; InterPro: IPR009470 This ~170 aa region is found at the C-terminal to the catalytic domain (IPR001223 from INTERPRO) found in members of glycoside hydrolase family 18.
Probab=26.97 E-value=46 Score=30.22 Aligned_cols=36 Identities=17% Similarity=0.309 Sum_probs=28.1
Q ss_pred ccccccccccccccccCCCCeEeccEEEEeCCCCCC
Q 023783 220 VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFET 255 (277)
Q Consensus 220 ~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~ 255 (277)
.=||++.====.-|.|.||+++++.+.+|+-=..|.
T Consensus 113 gdfHrvs~tlp~wqslapG~s~~~~~~YyLPiSgPs 148 (180)
T PF06483_consen 113 GDFHRVSFTLPAWQSLAPGASVELDMVYYLPISGPS 148 (180)
T ss_pred CceEEEEEECCCccccCCCCEEEEeEEEEeccCCCc
Confidence 346666655556699999999999999999766653
No 62
>PLN00194 aldose 1-epimerase; Provisional
Probab=26.38 E-value=2.3e+02 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=34.7
Q ss_pred EEEEEEEe-cCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNA-DVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A-~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
.|+.++.. +..++.|+.|+-+.+. ++..+....+.|.|+|. ++++.
T Consensus 120 ~v~~~l~~~~~~~gyP~~~~~~v~Y-~L~~~~~L~i~~~~~n~-~~~~p 166 (337)
T PLN00194 120 SITFKYHSFDGEEGFPGDLSVTVTY-TLLSSNTLRLDMEAKPL-NKATP 166 (337)
T ss_pred EEEEEEECCCcCCCCCEEEEEEEEE-EECCCCeEEEEEEEEEC-CCCeE
Confidence 46767765 3566789999987554 66667889999999998 77654
No 63
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=25.17 E-value=1.2e+02 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=20.7
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEE
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVS 209 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqA 209 (277)
.+.+||...+-..+.|.+++++....
T Consensus 65 ~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 65 SLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp EEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred EEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 36789999999999999999987653
No 64
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=25.02 E-value=2.3e+02 Score=26.27 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=16.4
Q ss_pred cccCCCCeEeccEEEEeC-CCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYID-PEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~ID-Pei~~D 256 (277)
.+|+||++..+=|.. +. ..+|+|
T Consensus 87 frl~p~~~q~lRIi~-~~~~~LP~D 110 (236)
T PRK11385 87 ILLKPGTTGTLRLLR-TESDILPVD 110 (236)
T ss_pred EEECCCCceEEEEEE-CCCCCCCCC
Confidence 368899988887764 44 467777
No 65
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=24.78 E-value=1.7e+02 Score=26.78 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=34.6
Q ss_pred EEEEEEEec--CCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEE
Q 023783 159 EVVVQFNAD--VADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVS 209 (277)
Q Consensus 159 ~I~V~F~A~--v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqA 209 (277)
.|++++..+ ...+.||.|+-+.+ .++. +..-.+.|+++|.+|+++.-..
T Consensus 99 ~v~l~l~~~~~~~~~~P~~~~~~~~-y~L~-~~~L~i~~~v~N~~~~~~p~~~ 149 (271)
T cd09025 99 GLTLTLRDNEATRAVYPFDFELELT-YRLA-GNTLEIAQRVHNLGDQPMPFSF 149 (271)
T ss_pred EEEEEEeCCHHHHhhCCceEEEEEE-EEEe-CCEEEEEEEEEECCCCcEEEEE
Confidence 566666543 23478999987643 3344 4788999999999999886444
No 66
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=23.92 E-value=1.6e+02 Score=29.87 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=32.8
Q ss_pred cCCCeeEEEEEEEcCCCCceEEE-------------EeCcccccchhccccccccccccccccCCCCeEeccE
Q 023783 186 KPGESALAFYTAENRSSTPITGV-------------STYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPV 245 (277)
Q Consensus 186 ~PGE~~l~fY~a~N~sd~pi~Gq-------------AvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV 245 (277)
.||-.-.+...++|.+|+|+.=- .+|...|+---.+..+ .=---+.-+++|||++++-|
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~-GL~v~d~~pI~PGETr~v~v 350 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAE-GLEVDDQSAIAPGETVEVKM 350 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhc-cceeCCCCCcCCCcceEEEE
Confidence 36666666777777777766310 2334444333333333 11123445799999998765
No 67
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=23.68 E-value=2e+02 Score=29.15 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhheech--------------hhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEE
Q 023783 100 KMLLYLTALVFAMVGSTYAAV--------------PLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFN 165 (277)
Q Consensus 100 ~~~~~l~~v~v~Mfgf~fA~V--------------PLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~ 165 (277)
+++.|.+++++++.+++|++. ||| +..-+|.....-. -.-.....+..++++.
T Consensus 301 r~~~Y~~~l~~~~~~~~~~l~~r~~~~~~v~r~r~~l~-----~~~~~g~i~N~Y~--------~~i~Nk~~~~~~~~l~ 367 (434)
T TIGR02745 301 RTIGYAAVLAIVIGLLAIALSTREPMDLNVLRDRNLLY-----VRNSDGVVENTYT--------LKILNKTEQPHEYYLS 367 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEEEEecCCcce-----EECCCCcEEEEEE--------EEEEECCCCCEEEEEE
Q ss_pred ecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEE
Q 023783 166 ADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGV 208 (277)
Q Consensus 166 A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~Gq 208 (277)
....++.-++..+. .+.|.|||.......+.-+.+..-.|.
T Consensus 368 v~g~~~~~~~~~~~--~i~v~~g~~~~~~v~v~~~~~~~~~~~ 408 (434)
T TIGR02745 368 VLGLPGIKIEGPGA--PIHVKAGEKVKLPVFLRTPPDALKSGI 408 (434)
T ss_pred EecCCCcEEEcCCc--eEEECCCCEEEEEEEEEechhhccCCc
No 68
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=23.48 E-value=1.7e+02 Score=21.72 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=24.4
Q ss_pred cEEEEEEEecCCCCCCeE--EEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 158 REVVVQFNADVADGMPWK--FIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~--F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
+.++++++. + =.|. +.|.+-. .|.|||...+.|.++=+.|
T Consensus 22 ~~v~~~l~~---P-~GW~~~~~~~~~~-~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 22 TNVSLSLSL---P-EGWTVSASPASVP-SLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp SS-EEEEE------TTSE---EEEEE---B-TTSEEEEEEEEEE-TT
T ss_pred eeEEEEEeC---C-CCccccCCccccc-cCCCCCEEEEEEEEECCCC
Confidence 456777664 2 3688 7776555 8999999999999985544
No 69
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.02 E-value=1.9e+02 Score=22.48 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=37.1
Q ss_pred eEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccc-cchhccccccccccccccccCCCCeEecc
Q 023783 174 WKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTP-MKAAVYFNKIQCFCFEEQRLLPGEQIDMP 244 (277)
Q Consensus 174 W~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP-~~Ag~YF~KieCFCF~eQ~L~pGE~vdMP 244 (277)
..|.|. .+.|++|+++ .|...+...+.++-.+ .-.| .....+...-. ....|+|||+....
T Consensus 12 ~~F~P~--~i~V~~G~tV--~~~n~~~~~Hnv~~~~--~~~~~~~~~~~~~~~~----~~~~~~~G~~~~~t 73 (99)
T PF00127_consen 12 MAFDPS--EITVKAGDTV--TFVNNDSMPHNVVFVA--DGMPAGADSDYVPPGD----SSPLLAPGETYSVT 73 (99)
T ss_dssp SSEESS--EEEEETTEEE--EEEEESSSSBEEEEET--TSSHTTGGHCHHSTTC----EEEEBSTTEEEEEE
T ss_pred cEEeCC--EEEECCCCEE--EEEECCCCCceEEEec--ccccccccccccCccc----cceecCCCCEEEEE
Confidence 678885 6999999964 5666667777776655 1111 11222222222 55678899986653
No 70
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=22.84 E-value=3.9e+02 Score=21.87 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=28.2
Q ss_pred cccccEEEEEEEecCCCCCCeEE---------E-ccccEEEecCCCeeEEEEEEE-cCCCCceEE
Q 023783 154 TVTTREVVVQFNADVADGMPWKF---------I-PTQREVRVKPGESALAFYTAE-NRSSTPITG 207 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~lPW~F---------~-P~q~~v~V~PGE~~l~fY~a~-N~sd~pi~G 207 (277)
+..+.+++|+|+-+..++-|-.= . --.+++.|.||+...+-+.+. .++.++++|
T Consensus 43 vv~d~~v~v~f~Vtr~~~~~a~C~VrA~~~d~aeVGrreV~vp~~~~~~~~~~v~v~Tt~~avtg 107 (112)
T PF14155_consen 43 VVDDSTVEVTFDVTRDPGRPAVCIVRALDYDGAEVGRREVLVPPSGERTVRVTVTVRTTARAVTG 107 (112)
T ss_pred ECCCCEEEEEEEEEECCCCCEEEEEEEEeCCCCEEEEEEEEECCCCCcEEEEEEEEEecCCCeEE
Confidence 44567899999866555544321 1 123456666644444443333 344444444
No 71
>PRK13736 conjugal transfer protein TraK; Provisional
Probab=22.73 E-value=1.9e+02 Score=26.98 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=37.3
Q ss_pred CCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccc--cccCCCCeEeccEEE
Q 023783 188 GESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEE--QRLLPGEQIDMPVFF 247 (277)
Q Consensus 188 GE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~e--Q~L~pGE~vdMPV~F 247 (277)
.+..-.-|+++|.+++++.-.--==-.|+ +-=.=|.+ ++|.|||+.++=|++
T Consensus 184 ~~l~g~~y~l~N~~~~~v~L~E~~F~~~g--------vrAVa~~~~~~~L~PG~~t~vyVI~ 237 (245)
T PRK13736 184 NHLKVVRYRVENPTLSARNLRESDFWQPG--------TRAVMFSQPARQLLAGGRMDVYVIR 237 (245)
T ss_pred CCcEEEEEEEEcCCCCCeEechHHhCCCC--------ceEEEecCCcccCCCCCEEEEEEEE
Confidence 45667889999999999875433333443 33345677 999999999876655
No 72
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.45 E-value=3.1e+02 Score=24.44 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=41.2
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCc-ccccchhccccccccccccccccCCCCeEeccEEEEeCCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYN-VTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEF 253 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvyn-VtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei 253 (277)
.+..|+...+.|.+.|..+.+-.-..+-- --|.+.-..-.-.-=.=| -+|.|||.+ -..|.|-|.-
T Consensus 33 ~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~--~~i~pg~~v--sh~~vv~p~~ 99 (181)
T PF05753_consen 33 YLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASW--ERIPPGENV--SHSYVVRPKK 99 (181)
T ss_pred cccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEE--EEECCCCeE--EEEEEEeeee
Confidence 35679999999999999999887776655 223222111111111112 378999987 4567776653
No 73
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=22.41 E-value=1.3e+02 Score=27.43 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=47.4
Q ss_pred HHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCCCeEEEccccEE--EecCCCeeEEEEEEEcCCCC
Q 023783 127 CQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREV--RVKPGESALAFYTAENRSST 203 (277)
Q Consensus 127 C~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v--~V~PGE~~l~fY~a~N~sd~ 203 (277)
|..||-|.|.....+.+++...+ +=++..=+-+.+..+-+..|-.+.+.+.+... .+.||+...+.|.+++-+..
T Consensus 51 chltgg~atl~vrr~n~s~~~~~--~f~vppcr~rrelvsvv~sg~~fT~trlsaYqVtNL~pGTkY~isY~Vtkgtst 127 (184)
T PF07353_consen 51 CHLTGGNATLMVRRANDSKVVKS--SFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLQPGTKYYISYLVTKGTST 127 (184)
T ss_pred ceecCCceEEEEeecCccceeee--eeEecCcccceeeEEEeecCCceeeccceeEEeeccCCCcEEEEEEEEecCccc
Confidence 99999888865543333322110 11111112233445566777789999988764 57899999999999886543
No 74
>PF07070 Spo0M: SpoOM protein; InterPro: IPR009776 This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH [].
Probab=22.37 E-value=2.3e+02 Score=26.16 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.1
Q ss_pred cccccCCCCeEeccEEEEeCCCCC
Q 023783 231 EEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 231 ~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
+..+|+|||+++.|..|=|-.+.|
T Consensus 78 ~~f~I~~ge~~~iPF~~~lP~etP 101 (218)
T PF07070_consen 78 GPFTIEPGEEKEIPFSFPLPWETP 101 (218)
T ss_pred CCEEECCCCEEEEeEEEECCCCCC
Confidence 457899999999999999987776
No 75
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=21.70 E-value=99 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.400 Sum_probs=14.9
Q ss_pred ccccEEEecCCCeeEEEEEE
Q 023783 178 PTQREVRVKPGESALAFYTA 197 (277)
Q Consensus 178 P~q~~v~V~PGE~~l~fY~a 197 (277)
-.|..|++.|||+..+.|..
T Consensus 63 al~~~v~L~PGe~~~v~f~l 82 (90)
T PF06205_consen 63 ALQVRVTLEPGEEKEVVFLL 82 (90)
T ss_dssp EEEEEEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCEEEEEEEE
Confidence 35678999999999999864
No 76
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=21.28 E-value=64 Score=32.03 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHHHHHHhheech
Q 023783 97 KSRKMLLYLTALVFAMVGSTYAAV 120 (277)
Q Consensus 97 ~n~~~~~~l~~v~v~Mfgf~fA~V 120 (277)
.+|.++..+.+++.+|+|++++++
T Consensus 314 PrrA~ilil~~LiGgm~g~g~vL~ 337 (347)
T COG3765 314 PRRAIILILGALIGGMLGAGVVLL 337 (347)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999886
No 77
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=20.99 E-value=79 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHHhheech
Q 023783 98 SRKMLLYLTALVFAMVGSTYAAV 120 (277)
Q Consensus 98 n~~~~~~l~~v~v~Mfgf~fA~V 120 (277)
++.+.+.+++++.+++|++++++
T Consensus 57 ~~~lil~l~~~~Gl~lgi~~~~~ 79 (82)
T PF13807_consen 57 KRALILALGLFLGLILGIGLAFL 79 (82)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666777888887754
No 78
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.84 E-value=1.3e+02 Score=21.72 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEccccEEEecCCCeeEEEEEEE
Q 023783 176 FIPTQREVRVKPGESALAFYTAE 198 (277)
Q Consensus 176 F~P~q~~v~V~PGE~~l~fY~a~ 198 (277)
|.+...++.|.+|++..+.+..+
T Consensus 46 y~~~~~~v~v~~~~~~~v~~~L~ 68 (71)
T PF08308_consen 46 YEPYTKTVTVKPGETTTVNVTLE 68 (71)
T ss_pred CeeEEEEEEECCCCEEEEEEEEE
Confidence 67888999999999999988765
No 79
>PF00870 P53: P53 DNA-binding domain; InterPro: IPR011615 This domain is found in p53 transcription factors, where it is responsible for DNA-binding. These transcription factors play diverse roles in the regulation of cellular functions: the p53 tumour suppressor upregulates the expression of genes involved in cell cycle arrest and apoptosis []. The DNA-binding domain acts to clamp, or in the case of TonEBP, encircle the DNA target in order to stabilise the protein-DNA complex []. Protein interactions may also serve to stabilise the protein-DNA complex, for example in the STAT-1 dimer the SH2 (Src homology 2) domain in each monomer is coupled to the DNA-binding domain to increase stability []. The DNA-binding domain consists of a beta-sandwich formed of 9 strands in 2 sheets with a Greek-key topology. This structure is found in many transcription factors, often within the DNA-binding domain.; GO: 0044212 transcription regulatory region DNA binding; PDB: 3US2_A 3QYM_E 3QYN_A 3US0_C 3US1_D 2RMN_A 3Q06_B 2VUK_A 2H1L_M 1KZY_B ....
Probab=20.83 E-value=3.3e+02 Score=24.72 Aligned_cols=57 Identities=16% Similarity=0.320 Sum_probs=44.5
Q ss_pred ccEEEEEEEec-CCCCCCeEEEccccEEEecCCCeeEEEEEEEc--CCCCceEEEEeCcc
Q 023783 157 TREVVVQFNAD-VADGMPWKFIPTQREVRVKPGESALAFYTAEN--RSSTPITGVSTYNV 213 (277)
Q Consensus 157 ~R~I~V~F~A~-v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N--~sd~pi~GqAvynV 213 (277)
.-...|.|+.. ++.+.+|.|.+.-+.+.++.+.+--+-|.... +.+-.|-++++|.-
T Consensus 12 ~~~F~v~f~~s~t~Ks~~wtYS~~LnKLf~~~~k~cpv~~~~~~~Pp~g~~iRam~Vy~~ 71 (196)
T PF00870_consen 12 PYNFQVSFQQSGTAKSATWTYSPKLNKLFCKMNKTCPVQFKVSSPPPPGTYIRAMPVYKK 71 (196)
T ss_dssp TTTEEEEESSSSSSTTTSEEEETTTTEEEEETTSEEEEEEEESS-SSTTEEEEEEEEESS
T ss_pred CcccEEEeccCCCCccccEEeehhcCceEEeccCCceEEEEEecCCCCCCEEEEEEEEcc
Confidence 34578899854 44568999999999999999999998888865 44556777777753
No 80
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=20.68 E-value=2.5e+02 Score=26.53 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=35.3
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVS 209 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqA 209 (277)
.+++.+... .++-||+|+-.+...--..| ..+.|.++|..++++.--+
T Consensus 116 ~~~l~~~~~-~~gyP~~l~~~vtY~L~~~~--L~v~~~~~n~~~~~~p~~~ 163 (308)
T COG2017 116 EFSLVLRDG-EDGYPGNLEATVTYTLNEDG--LTVTYEVTNDGDEPTPFNL 163 (308)
T ss_pred EEEEEeccc-CCCCCceEEEEEEEEEcCCC--EEEEEEEEeCCCCcceecc
Confidence 677777543 34589999998776544444 9999999999987765433
No 81
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=20.67 E-value=2.2e+02 Score=26.28 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=15.2
Q ss_pred cccCCCCeEeccEEEEeCC-CCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDP-EFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDP-ei~~D 256 (277)
.+|+|||+..+=|.. +.+ .+|.|
T Consensus 84 ~rl~p~~~q~lRIi~-~~~~~lP~D 107 (246)
T PRK09926 84 SRIDPKRGQTIKLMY-TASTALPKD 107 (246)
T ss_pred EEECCCCccEEEEEe-CCCCCCCCC
Confidence 367788887777664 455 56666
No 82
>PF02752 Arrestin_C: Arrestin (or S-antigen), C-terminal domain; InterPro: IPR011022 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The C-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=20.60 E-value=1.6e+02 Score=22.76 Aligned_cols=85 Identities=12% Similarity=0.173 Sum_probs=38.4
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeC-------cccccc-hhccccccccccccccccCCCCe--EeccEEEEeCCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTY-------NVTPMK-AAVYFNKIQCFCFEEQRLLPGEQ--IDMPVFFYIDPEF 253 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvy-------nVtP~~-Ag~YF~KieCFCF~eQ~L~pGE~--vdMPV~F~IDPei 253 (277)
...|||...+...+.|.+++.+.+.-+- .-.... .....+++-+- -....+.+++. .++-+.|-|-+++
T Consensus 15 ~~~~Ge~i~v~v~i~n~s~~~i~~I~v~L~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~l~lP~~~ 93 (136)
T PF02752_consen 15 AYVPGETIPVNVEIDNQSKKKIKKIKVSLVERITYKAKGGKDESKSEKRVVAK-SKNCGVDPGSSGSFEFNIQLQLPSNL 93 (136)
T ss_dssp EEETT--EEEEEEEEE-SSSEEEEEEEEEEEEEEE-SS----S-EEEEEEEEE-EECCEB-B-TTEEEEEEEEE-----B
T ss_pred EECCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEeeccccceEEEEEEEE-EecCCccCCCCceEEEEEEEcCCCcc
Confidence 3569999999999999999998875432 222211 11222222222 12222344444 4544666555455
Q ss_pred CCCcCCC-CCcEEEEEEEe
Q 023783 254 ETDPRMD-GINNLILSYTF 271 (277)
Q Consensus 254 ~~Dp~~~-~v~tITLSYTF 271 (277)
+. .+. .-+-|..+|.+
T Consensus 94 ~~--s~~~~~~~i~v~Y~l 110 (136)
T PF02752_consen 94 PP--STSTNSRLIQVEYQL 110 (136)
T ss_dssp -------CGGGSEEEEEEE
T ss_pred Cc--ccccCCcEEEEEEEE
Confidence 43 222 56777888875
No 83
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=20.49 E-value=2e+02 Score=20.37 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=29.8
Q ss_pred EEecCCCeeEEEEEEEcCCCCceEEEEeCccccc
Q 023783 183 VRVKPGESALAFYTAENRSSTPITGVSTYNVTPM 216 (277)
Q Consensus 183 v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~ 216 (277)
-.+.||++..-.=.++|..+.+..+..+-..-|.
T Consensus 6 ~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~ 39 (53)
T TIGR01451 6 TVATIGDTITYTITVTNNGNVPATNVVVTDILPS 39 (53)
T ss_pred cccCCCCEEEEEEEEEECCCCceEeEEEEEcCCC
Confidence 4578999999999999999999999888877774
No 84
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=20.07 E-value=3e+02 Score=23.84 Aligned_cols=74 Identities=9% Similarity=0.044 Sum_probs=40.8
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCC-CceEEEEeCcccccchhccccccccccccccc
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS-TPITGVSTYNVTPMKAAVYFNKIQCFCFEEQR 234 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd-~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~ 234 (277)
.+..+.++|.... ++.|+|-|--.--.+|.. .-.|.+.+..+ ....-..+-.+..+..+.|..+ .
T Consensus 10 t~~~~~l~l~~~~----~~~~~pGQ~v~l~~~~~~-~r~ySi~s~~~~~~~l~~~vk~~~~G~~s~~l~~---------~ 75 (224)
T cd06189 10 NDDVYRVRLKPPA----PLDFLAGQYLDLLLDDGD-KRPFSIASAPHEDGEIELHIRAVPGGSFSDYVFE---------E 75 (224)
T ss_pred CCceEEEEEecCC----CcccCCCCEEEEEcCCCC-ceeeecccCCCCCCeEEEEEEecCCCccHHHHHH---------h
Confidence 4567888886432 567777775544445543 34566555433 2333333333323444445443 5
Q ss_pred cCCCCeEec
Q 023783 235 LLPGEQIDM 243 (277)
Q Consensus 235 L~pGE~vdM 243 (277)
|+||+++++
T Consensus 76 l~~G~~v~i 84 (224)
T cd06189 76 LKENGLVRI 84 (224)
T ss_pred ccCCCEEEE
Confidence 789999876
No 85
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=20.03 E-value=1.4e+02 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=21.7
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCC
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSST 203 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~ 203 (277)
-...|.|. +++|+.|+++++.+. |.++-
T Consensus 54 ~n~~~~P~--~I~VkaGD~Vtl~vt--N~d~~ 81 (135)
T TIGR03096 54 FNVLNEPE--ALVVKKGTPVKVTVE--NKSPI 81 (135)
T ss_pred eeeEEcCC--EEEECCCCEEEEEEE--eCCCC
Confidence 46778885 688999998888774 87774
Done!