Query 023783
Match_columns 277
No_of_seqs 132 out of 524
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:43:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023783.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023783hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1so9_A Cytochrome C oxidase as 100.0 6.8E-76 2.3E-80 507.2 7.1 149 119-276 1-149 (164)
2 2qsv_A Uncharacterized protein 92.4 0.2 6.8E-06 43.3 5.9 59 174-247 120-183 (220)
3 1suj_A CONE arrestin; sensory 82.5 3.5 0.00012 39.6 7.9 67 186-255 206-277 (392)
4 2e6j_A Hydin protein; PAPD, st 82.3 1.9 6.5E-05 32.5 4.9 58 184-249 21-80 (112)
5 2ys4_A Hydrocephalus-inducing 77.8 1.8 6.3E-05 33.7 3.5 56 184-250 36-91 (122)
6 2qsv_A Uncharacterized protein 75.9 3.6 0.00012 35.3 5.2 59 184-254 14-72 (220)
7 3c75_A Amicyanin; copper prote 73.3 6.4 0.00022 31.3 5.7 34 156-202 44-77 (132)
8 3qbt_B Inositol polyphosphate 70.6 6.7 0.00023 31.8 5.3 66 184-252 38-103 (140)
9 1bxv_A Plastocyanin; copper pr 70.4 11 0.00037 26.9 5.9 64 158-243 1-64 (91)
10 4ubp_B Protein (urease (chain 70.0 13 0.00043 30.9 6.8 77 169-246 5-88 (126)
11 4ac7_B Urease subunit beta; hy 70.0 13 0.00043 30.9 6.8 77 169-246 5-88 (126)
12 4hci_A Cupredoxin 1; structura 68.0 9.1 0.00031 28.4 5.2 39 154-203 10-48 (100)
13 1e9y_A Urease subunit alpha; h 64.8 16 0.00053 33.2 6.9 92 154-246 88-187 (238)
14 4ep8_B Urease subunit beta; al 64.3 18 0.0006 29.0 6.4 74 172-246 2-82 (101)
15 1b3i_A PETE protein, protein ( 63.7 36 0.0012 24.6 7.7 66 160-243 3-70 (97)
16 3f7c_A Protein of unknown func 62.8 3.6 0.00012 36.3 2.3 25 110-134 21-45 (200)
17 1iby_A Nitrosocyanin; RED copp 62.5 19 0.00064 27.1 6.1 53 172-245 31-83 (112)
18 3qga_A UREA2, fusion of urease 59.7 20 0.00067 32.3 6.5 92 154-246 88-187 (225)
19 3hs8_A Adaptor protein complex 58.8 21 0.00072 32.3 6.8 74 187-270 66-141 (273)
20 3s8f_B Cytochrome C oxidase su 56.5 85 0.0029 26.4 9.8 47 156-213 75-121 (168)
21 2q9r_A Protein of unknown func 55.1 5.8 0.0002 35.0 2.3 25 110-134 22-46 (200)
22 2plt_A Plastocyanin; electron 52.4 44 0.0015 24.1 6.5 59 173-243 12-71 (98)
23 1pcs_A Plastocyanin; electron 49.4 55 0.0019 23.6 6.6 57 173-243 13-71 (98)
24 3ugu_A S-arrestin; arrestin fo 47.9 32 0.0011 33.1 6.3 68 185-255 224-296 (380)
25 1v54_J Cytochrome C oxidase po 45.4 16 0.00055 26.3 3.0 43 80-122 4-50 (59)
26 1g4m_A Beta-arrestin1; sensory 43.9 47 0.0016 31.5 6.8 68 184-254 207-279 (393)
27 2gim_A Plastocyanin; beta shee 41.2 64 0.0022 23.5 5.9 70 159-243 3-75 (106)
28 3ucp_A UNDA; beta-barrel, C-ty 40.2 15 0.00051 35.2 2.8 25 183-208 61-85 (874)
29 1plc_A Plastocyanin; electron 38.9 68 0.0023 23.2 5.7 24 173-202 11-34 (99)
30 2y69_J Cytochrome C oxidase po 38.0 25 0.00085 26.8 3.2 45 79-123 24-72 (80)
31 1yga_A Hypothetical 37.9 kDa p 37.7 63 0.0021 29.0 6.4 55 159-214 119-182 (342)
32 3os7_A Galactose mutarotase-li 36.0 82 0.0028 28.5 6.9 46 159-206 130-179 (341)
33 3idu_A Uncharacterized protein 35.7 71 0.0024 25.6 5.8 53 184-245 28-80 (127)
34 2aan_A Auracyanin A; cupredoxi 35.2 48 0.0017 25.8 4.6 38 156-202 17-54 (139)
35 3qis_A Inositol polyphosphate 34.8 66 0.0022 29.7 6.2 63 184-252 41-106 (366)
36 1byp_A Protein (plastocyanin); 34.8 93 0.0032 22.3 5.9 24 173-202 11-34 (99)
37 1pmy_A Pseudoazurin; electron 33.2 88 0.003 24.5 5.9 42 159-206 2-43 (123)
38 3nre_A Aldose 1-epimerase; str 33.1 96 0.0033 27.5 6.8 44 158-206 100-143 (291)
39 3cvb_A Plastocyanin; cupredoxi 33.1 1.3E+02 0.0046 21.5 6.6 72 159-243 2-74 (105)
40 3q1n_A Galactose mutarotase re 32.9 43 0.0015 29.7 4.4 49 158-208 89-139 (294)
41 3k25_A SLR1438 protein; struct 32.7 71 0.0024 28.1 5.8 47 159-207 111-159 (289)
42 1qhq_A Protein (auracyanin); e 32.2 35 0.0012 26.6 3.3 35 156-199 15-49 (140)
43 1iby_A Nitrosocyanin; RED copp 31.3 72 0.0025 23.7 4.9 44 154-197 42-85 (112)
44 1iuz_A Plastocyanin; electron 31.2 1.5E+02 0.0051 21.4 6.9 59 173-243 12-71 (98)
45 2h1t_A Hypothetical protein; s 30.9 54 0.0018 28.5 4.5 31 235-272 121-151 (188)
46 3mwx_A Aldose 1-epimerase; str 30.8 62 0.0021 28.9 5.1 47 158-206 122-172 (326)
47 3rfr_A PMOB; membrane, oxidore 29.9 69 0.0023 31.2 5.5 57 185-245 294-364 (419)
48 3dcd_A Galactose mutarotase re 28.5 55 0.0019 29.4 4.4 48 158-207 89-138 (307)
49 3erx_A Pseudoazurin; copper pr 28.1 44 0.0015 26.5 3.3 42 159-206 2-43 (123)
50 1paz_A Pseudoazurin precursor; 27.5 1.5E+02 0.0053 23.0 6.4 42 159-206 2-43 (123)
51 1yew_A Particulate methane mon 27.4 91 0.0031 30.0 5.8 60 186-245 261-332 (382)
52 3hrz_B Cobra venom factor; ser 27.2 87 0.003 27.4 5.3 55 185-252 92-155 (252)
53 2cua_A Protein (CUA); CUA cent 25.6 1.4E+02 0.0047 23.9 5.8 44 158-212 44-87 (135)
54 1kyf_A Alpha-adaptin C; protei 25.5 3.3E+02 0.011 23.8 8.8 75 188-271 41-116 (247)
55 1ikn_C P50D, protein (NF-kappa 23.5 66 0.0023 26.0 3.5 59 158-216 32-106 (119)
56 2p26_A Integrin beta-2; hybrid 23.1 81 0.0028 28.6 4.4 26 173-198 73-98 (280)
57 3q48_A Chaperone CUPB2; IG fol 22.6 1.3E+02 0.0043 26.8 5.5 23 233-256 87-109 (257)
58 3tu6_A Pseudoazurin (blue copp 21.8 1E+02 0.0034 24.5 4.3 43 159-206 3-45 (127)
59 1id2_A Amicyanin; beta barrel, 21.8 91 0.0031 23.3 3.9 33 157-202 19-51 (106)
60 2r39_A FIXG-related protein; s 21.1 62 0.0021 25.0 2.8 56 193-256 35-90 (118)
61 1w8o_A Bacterial sialidase; 3D 20.8 1.5E+02 0.0052 28.1 6.0 65 181-253 365-429 (601)
62 2cir_A Hexose-6-phosphate muta 20.1 94 0.0032 27.1 4.1 37 170-208 118-155 (297)
No 1
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=100.00 E-value=6.8e-76 Score=507.19 Aligned_cols=149 Identities=49% Similarity=0.952 Sum_probs=122.8
Q ss_pred chhhHHHHHHHhcCCceeeeehhhHHHHhhccCCCcccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEE
Q 023783 119 AVPLYRRFCQATGYGGTVQRKETVEEKIARHSKDGTVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAE 198 (277)
Q Consensus 119 ~VPLY~~FC~vTG~~Gtt~~~~~~~~~~~~~~~~~vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~ 198 (277)
||||||+||++|||||||+++... ..++.+|+|+|+|||+++++|||+|+|+|++|+|||||+++++|+|+
T Consensus 1 lVPLY~~fC~~TG~~Gtt~~~~~~---------~~~~~~R~I~V~F~a~~~~~lpW~F~P~q~~v~V~pGE~~~~~y~a~ 71 (164)
T 1so9_A 1 MVPLYDMFCRVTGYNGTTQRVEQA---------SDLILDEKIKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAK 71 (164)
T ss_dssp --------------------CCCC---------SSSCCSCCEEEEEEEEECTTSCEEEECSCSEEEECTTCCCCEEEEEE
T ss_pred CCchHHHHHHHhCCCCEecccccC---------CccccceEEEEEEEeecCCCCceEEEeceeEEEEcCCCeEEEEEEEE
Confidence 699999999999999999876432 12568999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEeeecCC
Q 023783 199 NRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFKVNE 276 (277)
Q Consensus 199 N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF~~~~ 276 (277)
|++|++|+|||+|||+|++||.||||||||||+||+|+|||++||||+|||||||++||+|++|++||||||||++++
T Consensus 72 N~sd~~i~G~A~ynV~P~~a~~YF~KieCFCF~eQ~L~pgE~~~MPV~F~IDP~i~~D~~~~~v~tITLSYTFf~~~~ 149 (164)
T 1so9_A 72 NLASTPTTGQATFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSYTFYPREP 149 (164)
T ss_dssp ECSSSCEECCCEEEECSSSCSTTBTTSCCSSCSCCEECTTCEEEEEECCCBCGGGGSSTTTTTCCBCCEEEEECSCCS
T ss_pred CCCCCcEEEEECceeCHHHHhhhccceeeEcccCcccCCCCeEeeeEEEEECCCcCCCcccCCCCEEEEEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=92.43 E-value=0.2 Score=43.30 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=46.3
Q ss_pred eEEEccccEE-EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc----ccccCCCCeEeccEEE
Q 023783 174 WKFIPTQREV-RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE----EQRLLPGEQIDMPVFF 247 (277)
Q Consensus 174 W~F~P~q~~v-~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~----eQ~L~pGE~vdMPV~F 247 (277)
.+|. ..-.. .+. |+.....|..+|..+.|+.=..+ +..|-|+. ..+++|||+.++-|.|
T Consensus 120 i~~~-~~~dfG~i~-g~~~~~~f~i~N~G~~pL~I~~v-------------~~scgct~~~~~~~~i~PGe~~~i~v~~ 183 (220)
T 2qsv_A 120 MELS-TYLDMGQLD-GETTKAAIEIRNVGAGPLRLHSV-------------TTRNPALTAVPDRTEIKPGGSTLLRIAV 183 (220)
T ss_dssp EECC-CEEEEEECT-TSCEEEEEEEEECSSSCEEEEEE-------------EECSTTEEEEESCSEECTTCEEEEEEEE
T ss_pred EEEE-eEEeeeccC-CCeEEEEEEEEECCCCCEEEEEE-------------EeCCCCEeeecCCccCCCCCEEEEEEEE
Confidence 4444 33333 355 99999999999999999985443 45799987 8899999999988887
No 3
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=82.51 E-value=3.5 Score=39.58 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=45.3
Q ss_pred cCCCeeEEEEEEEcCCCCceEEEEeC--cccc---cchhccccccccccccccccCCCCeEeccEEEEeCCCCCC
Q 023783 186 KPGESALAFYTAENRSSTPITGVSTY--NVTP---MKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFET 255 (277)
Q Consensus 186 ~PGE~~l~fY~a~N~sd~pi~GqAvy--nVtP---~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~ 255 (277)
.|||++.+...+.|.|+++|..+-+- ..+= ...+ .+.|+-+-.-....+.||.+.. -.|.|-|.++.
T Consensus 206 ~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~-~~k~~Va~~e~~e~V~pgst~~--k~~~L~P~l~~ 277 (392)
T 1suj_A 206 YHGEPINVNVKINNTTGKIVKKIKIIVEQVTDVVLFSLD-KYVKTVCAEETNDTVAANSTLS--KTFSVTPMLAN 277 (392)
T ss_dssp ETTCCEEEEEEEEECSSSEEEEEEEEEEEEEEECSSSCC-EEEEEEEEEECCCCBCTTEEEE--EEEEECCCGGG
T ss_pred cCCCEEEEEEEEECCCCCcEeEEEEEEEEEEEEEEecCC-cEEEEEEEEecCCCcCCCCEEE--EEEEEeccccC
Confidence 59999999999999999999874322 1111 1123 3355544443344899999955 67777788873
No 4
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.34 E-value=1.9 Score=32.47 Aligned_cols=58 Identities=22% Similarity=0.210 Sum_probs=39.6
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc--ccccCCCCeEeccEEEEe
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE--EQRLLPGEQIDMPVFFYI 249 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~--eQ~L~pGE~vdMPV~F~I 249 (277)
.|..|+.....+.++|.++.|..=+.. |..... -.||-++ +-+|.|||+.++-|.|--
T Consensus 21 ~v~~g~~~~~~~~l~N~g~~p~~~~~~----~~~~~~----~~~f~v~p~~g~i~pg~~~~i~V~f~~ 80 (112)
T 2e6j_A 21 KVFTGSAHCYEAILYNKGSIDALFNMT----PPTSAL----GACFVFSPKEGIIEPSGVQAIQISFSS 80 (112)
T ss_dssp EEESSCCEEEEEEEEECCSSCEEEEEC----CCSSHH----HHHCEEESSEEEECTTBCCEEEEEECC
T ss_pred eEEECCEEEEEEEEEECCcceEEEEEe----cCCccc----cCcEEEECCcCEECCCCEEEEEEEEEC
Confidence 456799999999999999998654443 322100 0134332 669999999888888743
No 5
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.77 E-value=1.8 Score=33.72 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=38.9
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYID 250 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~ID 250 (277)
.+..|+.....+.++|.++.+..= .+.+. ..|. ..-.+-.|+|||+.++.|.|.=.
T Consensus 36 ~~~v~~~~~~~~~l~N~g~~~~~f----~~~~~---~~F~----i~P~~g~L~pg~~~~i~V~F~P~ 91 (122)
T 2ys4_A 36 TCPVKYSTQKILLVRNIGNKNAVF----HIKTC---RPFS----IEPAIGTLNVGESMQLEVEFEPQ 91 (122)
T ss_dssp SEESSSCEEEEEEEECCSSSCEEE----EEECC---TTEE----EESSEEEECTTCEEEEEEEECCS
T ss_pred CeecCCeEEEEEEEEECCCCCEEE----EEecC---CCeE----EECCcCEECCCCEEEEEEEEEcC
Confidence 457899999999999999987642 22221 1221 12234689999999999999743
No 6
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=75.87 E-value=3.6 Score=35.28 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=42.4
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
.|..|+.....+.++|.+++|+.=..+ .+ | .|+.- . =+..+|+|||+.++-|.| |++-.
T Consensus 14 ~v~~g~~~~~~~~i~N~g~~pl~i~~~-~~-p----~~~~~-~---~~~~~I~PG~~g~I~vt~--~~~~~ 72 (220)
T 2qsv_A 14 ISMPEDEGVVRLVVNNTDESDLQVAVV-SL-P----SFVSL-D---DRAFRLQAREPRELNLSL--AVPRN 72 (220)
T ss_dssp SBCTTCCCEEEEEEEECSSSCEEEEEE-EC-C----TTEEC-S---CCEEEECSSSCEEEEEEE--CCCTT
T ss_pred cccCCCcceEEEEEEeCCCCceEEEec-cC-C----CceEe-e---eCcceeCCCCceEEEEEE--cchhc
Confidence 367899999999999999999986654 11 2 23221 1 135899999998888877 55544
No 7
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=73.31 E-value=6.4 Score=31.29 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=24.2
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
.+++++|.-. .+.|.| ..++|++|++... .|..+
T Consensus 44 ~~~~~~V~~~-------~~~F~P--~~i~V~~GdtV~~----~N~d~ 77 (132)
T 3c75_A 44 PADAVVVGIE-------KMKYLT--PEVTIKAGETVYW----VNGEV 77 (132)
T ss_dssp CTTSEEEEEE-------TTEESS--SEEEECTTCEEEE----EECSS
T ss_pred CCccEEEEEe-------eeEEeC--CEEEECCCCEEEE----EECCC
Confidence 3466777663 478999 5899999998753 37654
No 8
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens}
Probab=70.57 E-value=6.7 Score=31.80 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=44.4
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe 252 (277)
.|.-|+...-.+.++|++.-|..=..++. |.. ..+....=..--.+=+|.|||+++.-|.|+||+.
T Consensus 38 ~v~~~~~~~~~l~I~Ntg~vpa~F~f~~~--~~~-~~~~~~wl~v~P~~G~L~Pge~~~I~v~~~v~~~ 103 (140)
T 3qbt_B 38 NVKFRQLQKEKFQISNNGQVPCHFSFIPK--LND-SQYCKPWLRAEPFEGYLEPNETVDISLDVYVSKD 103 (140)
T ss_dssp EECBTCCEEEEEEEEECSSSCEEEEEECC--TTC-SSSSCTTEEEESCEEEECTTCEEEEEEEECBCHH
T ss_pred eceeeeeeeeEEEEEcCCccceEEEEecC--CCc-hhhhhHhhhcCCcccccCCCCeeEEEEEEEEccC
Confidence 37889999999999999998876555432 111 1111110011234569999999999999999984
No 9
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=70.39 E-value=11 Score=26.89 Aligned_cols=64 Identities=19% Similarity=0.399 Sum_probs=37.3
Q ss_pred cEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCC
Q 023783 158 REVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLP 237 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~p 237 (277)
|+|+|+-.++ +-.|.|.|. .++|++|++.. | .|.++.+ -...+.. .+.+ =++...+.|
T Consensus 1 r~~~v~~~~~---~~~~~f~P~--~i~v~~Gd~V~--~--~n~~~~~-H~v~~~~-----~~~~-------~~~~~~~~~ 58 (91)
T 1bxv_A 1 QTVAIKMGAD---NGMLAFEPS--TIEIQAGDTVQ--W--VNNKLAP-HNVVVEG-----QPEL-------SHKDLAFSP 58 (91)
T ss_dssp CEEEEEESCT---TSCSSEESS--EEEECTTCEEE--E--EECSSCC-EEEEETT-----CGGG-------CEEEEECST
T ss_pred CeEEEEEecC---CCccEEeCC--EEEECCCCEEE--E--EECCCCC-cEEEEeC-----CCcc-------CcccceeCC
Confidence 5677776432 235889996 68999999875 3 3654322 1111111 1111 145678999
Q ss_pred CCeEec
Q 023783 238 GEQIDM 243 (277)
Q Consensus 238 GE~vdM 243 (277)
||+.+.
T Consensus 59 g~~~~~ 64 (91)
T 1bxv_A 59 GETFEA 64 (91)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998765
No 10
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=69.99 E-value=13 Score=30.86 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=59.6
Q ss_pred CCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeE
Q 023783 169 ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQI 241 (277)
Q Consensus 169 ~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~v 241 (277)
++-.|-+..+....|++.+|... +.-.++|+.|+||---+=|...=...+.-|.--.-+-+ +--+++|||++
T Consensus 5 ~~miPGei~~~~g~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k 83 (126)
T 4ubp_B 5 NYIVPGEYRVAEGEIEINAGREK-TTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEM 83 (126)
T ss_dssp CCCCTTCEECCSSEEETTTTSCE-EEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEE
T ss_pred CCCCCCeEEeCCCCEEeCCCCcE-EEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeE
Confidence 44569999999999999999754 57789999999998877777766666666655555443 45678899999
Q ss_pred eccEE
Q 023783 242 DMPVF 246 (277)
Q Consensus 242 dMPV~ 246 (277)
+..++
T Consensus 84 ~V~LV 88 (126)
T 4ubp_B 84 EVELT 88 (126)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 11
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=69.99 E-value=13 Score=30.86 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=59.6
Q ss_pred CCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeE
Q 023783 169 ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQI 241 (277)
Q Consensus 169 ~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~v 241 (277)
++-.|-+..+....|++.+|... +.-.++|+.|+||---+=|...=...+.-|.--.-+-+ +--+++|||++
T Consensus 5 ~~miPGei~~~~g~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k 83 (126)
T 4ac7_B 5 NYIVPGEYRVAEGEIEINAGREK-TTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEM 83 (126)
T ss_dssp CCCCTTCEECCSSEEETTTTSCE-EEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEECSCTTCEEEECTTCEE
T ss_pred CCCCCCeEEeCCCCEEeCCCCcE-EEEEEEeCCCCCEEEccccchhhcCchhhccHhhhcCccccccCCCeEeeCCCCeE
Confidence 44569999999999999999754 57789999999998877777766666666655555443 45678899999
Q ss_pred eccEE
Q 023783 242 DMPVF 246 (277)
Q Consensus 242 dMPV~ 246 (277)
+..++
T Consensus 84 ~V~LV 88 (126)
T 4ac7_B 84 EVELT 88 (126)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88775
No 12
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=67.98 E-value=9.1 Score=28.39 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=26.0
Q ss_pred cccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCC
Q 023783 154 TVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSST 203 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~ 203 (277)
.+..+.|+|+-. .+.|.|. +++|.+|++++. ..+|....
T Consensus 10 ~a~~~~v~V~~~-------~~~F~P~--~i~v~~G~tV~~--~~~n~d~~ 48 (100)
T 4hci_A 10 IASAKVIEVELN-------DDYFNPN--VITIPINESTTL--LLKNKGKS 48 (100)
T ss_dssp ----CCEEEEEE-------TTEEESS--EEEECTTSCEEE--EEEECSSS
T ss_pred CCCCcEEEEEEE-------CCEEeCC--EEEECCCCEEEE--EEEcCCCc
Confidence 445678888874 2689995 699999998765 45676543
No 13
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A {Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB: 1e9z_A*
Probab=64.78 E-value=16 Score=33.20 Aligned_cols=92 Identities=16% Similarity=0.287 Sum_probs=68.7
Q ss_pred cccccEEEEEEEecCCCCC-CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc--
Q 023783 154 TVTTREVVVQFNADVADGM-PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-- 230 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~l-PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-- 230 (277)
.|..+-|+|.--=...++| |-+..+....|.+.+|... +.-.++|+.|+||---+=|...=...+.=|.--.-+=+
T Consensus 88 pDGTkLVTVh~PI~~~~gmiPGei~~~~g~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RL 166 (238)
T 1e9y_A 88 PDGTKLVTVHTPIEANGKLVPGELFLKNEDITINEGKKA-VSVKVKNVGDRPVQIGSHFHFFEVNRCLDFDREKTFGKRL 166 (238)
T ss_dssp TTEEEEEEEECCSCCCSSCCTTCEECCSCEEETTTTCCC-CEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEE
T ss_pred CCCCEEEEeecCCCcccCCCCCeEEcCCCCeeeCCCCCe-EEEEEEeCCCCceEeccccchHhcCccccccHHHhCCccc
Confidence 3567778887654444444 9899999999999999874 77899999999998777777766666666655444433
Q ss_pred -----cccccCCCCeEeccEE
Q 023783 231 -----EEQRLLPGEQIDMPVF 246 (277)
Q Consensus 231 -----~eQ~L~pGE~vdMPV~ 246 (277)
+--+++|||+++..++
T Consensus 167 dIpAGTAVRFEPG~~r~V~LV 187 (238)
T 1e9y_A 167 DIAAGTAVRFEPGEEKSVELI 187 (238)
T ss_dssp CSSTTCEEEECTTCEEEEEEE
T ss_pred CcCCCCeEeeCCCCeeEEEEE
Confidence 4457889999988775
No 14
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=64.34 E-value=18 Score=28.97 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=54.7
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc-------cccccCCCCeEecc
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-------EEQRLLPGEQIDMP 244 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-------~eQ~L~pGE~vdMP 244 (277)
+|-+..+....|++.+|-. .+.-.++|+.|+||---+=|...=...|.=|..-.-+=+ +--+++|||+++..
T Consensus 2 iPGei~~~~g~I~lN~gr~-~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~r~V~ 80 (101)
T 4ep8_B 2 IPGEYHVKPGQIALNTGRA-TCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVE 80 (101)
T ss_dssp CTTCEECCCSEEECSTTCC-EEEEEEEECSSSCEEEETTSCGGGSCTTEESCTTTTTTEEECSSTTCEEEECTTCEEEEE
T ss_pred cCceEecCCCcEEEcCCCC-EEEEEEEeCCCcceEEccccChhHcCcceeecHhhccCceecccCCCeEeeCCCCeEEEE
Confidence 4667788888999999976 456699999999998877777766666665554444332 34567889888877
Q ss_pred EE
Q 023783 245 VF 246 (277)
Q Consensus 245 V~ 246 (277)
++
T Consensus 81 LV 82 (101)
T 4ep8_B 81 LV 82 (101)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 15
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=63.69 E-value=36 Score=24.55 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=39.2
Q ss_pred EEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCC--CCceEEEEeCcccccchhccccccccccccccccCC
Q 023783 160 VVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRS--STPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLP 237 (277)
Q Consensus 160 I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~s--d~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~p 237 (277)
++|.-.++ +-.+.|.|. .++|++|++. .|. |.+ .+.+.-.... . |..++.. . ++...|.|
T Consensus 3 ~~V~~~~~---~~~~~F~P~--~i~v~~G~~V--~~~--n~~~~~H~~~~~~~~-~-~~~~~~~-~------~~~~~~~~ 64 (97)
T 1b3i_A 3 VQIKMGTD---KYAPLYEPK--ALSISAGDTV--EFV--MNKVGPHNVIFDKVP-A-GESAPAL-S------NTKLAIAP 64 (97)
T ss_dssp EEEEEEET---TTEEEEESS--EEEECTTCEE--EEE--ECSSCCCCBEEEECC-T-TSCHHHH-C------BCCCCCSC
T ss_pred EEEEEecc---CCccEEeCC--EEEECCCCEE--EEE--ECCCCCeEEEEeCCC-C-ccccccc-c------ccceecCC
Confidence 45555432 225899996 6899999974 333 665 3555433321 1 4443321 1 46678999
Q ss_pred CCeEec
Q 023783 238 GEQIDM 243 (277)
Q Consensus 238 GE~vdM 243 (277)
||+.+.
T Consensus 65 g~~~~~ 70 (97)
T 1b3i_A 65 GSFYSV 70 (97)
T ss_dssp SCCEEE
T ss_pred CCEEEE
Confidence 999876
No 16
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=62.80 E-value=3.6 Score=36.33 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.7
Q ss_pred HHHHHhheechhhHHHHHHHhcCCc
Q 023783 110 FAMVGSTYAAVPLYRRFCQATGYGG 134 (277)
Q Consensus 110 v~Mfgf~fA~VPLY~~FC~vTG~~G 134 (277)
++|.+++==+.|=|.+||++||+|.
T Consensus 21 ~F~aaLcERM~PNY~lF~e~tefgd 45 (200)
T 3f7c_A 21 AFLLALAERSFPNYALFADAVGLKT 45 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCccHHHHHHHHCCCc
Confidence 3566666678899999999999976
No 17
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=62.49 E-value=19 Score=27.07 Aligned_cols=53 Identities=21% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccE
Q 023783 172 MPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPV 245 (277)
Q Consensus 172 lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV 245 (277)
..|.|.| ..++|++|++..+ .++|..+. .-|..+++. + + +..+.|||+.++-.
T Consensus 31 ~~~~f~p--~~i~v~~G~~V~~--~~~n~d~~-~H~~~i~~~-----~-----~------~~~i~pG~~~~~~f 83 (112)
T 1iby_A 31 FNVLNEP--ETLVVKKGDAVKV--VVENKSPI-SEGFSIDAF-----G-----V------QEVIKAGETKTISF 83 (112)
T ss_dssp EEEEEES--CEEEEETTCEEEE--EEEECSSS-CEEEEEGGG-----T-----E------EEEECTTCEEEEEE
T ss_pred EeeEEcC--CEEEEeCCCEEEE--EEEECCCC-eEEEEEcCC-----C-----c------eeEeCCCCEEEEEE
Confidence 5788988 5799999998664 55676543 556655542 1 1 46799999876443
No 18
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron metalloenzyme, alpha-beta barrel, hydrolase; HET: FME KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Probab=59.75 E-value=20 Score=32.32 Aligned_cols=92 Identities=13% Similarity=0.219 Sum_probs=68.3
Q ss_pred cccccEEEEEEEecCCCCCCeEE-EccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccc--
Q 023783 154 TVTTREVVVQFNADVADGMPWKF-IPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCF-- 230 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~lPW~F-~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF-- 230 (277)
.|..+-|+|.--=......|-+. .+....|.+.+|... +.-.+.|+.|+||---+=|...=...+.-|.--.-+-+
T Consensus 88 pDGTkLVTVh~PI~~~~~~PGei~~~~~g~I~lN~gr~~-~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RL 166 (225)
T 3qga_A 88 PDGTKLVTVNWPIEPDDFKAGEIKFASDKDIELNAGKEI-TELKVTNKGPKSLHVGSHFHFFEANRALEFDREKAYGKRL 166 (225)
T ss_dssp TTEEEEEEEESCBCCCSCCTTCEECSCSCCEETTTTCCC-EEEEEEECSSSCEEEETTSCGGGSCTTEESCGGGGTTEEE
T ss_pred CCCCEEEEeccCccCCCCCCCeEeccCCCceecCCCCce-EEEEEEECCCCceeeccccchhhcCchhhccHHHhCCccc
Confidence 35677788875433334568888 888889999999754 56789999999998888887776666666665555544
Q ss_pred -----cccccCCCCeEeccEE
Q 023783 231 -----EEQRLLPGEQIDMPVF 246 (277)
Q Consensus 231 -----~eQ~L~pGE~vdMPV~ 246 (277)
+--+++|||+++..++
T Consensus 167 dIpAGTavRFEPG~~k~V~LV 187 (225)
T 3qga_A 167 DIPSGNTLRIGAGETKTVHLI 187 (225)
T ss_dssp CSCTTCEEEECTTCEEEEEEE
T ss_pred ccCCCCeEeeCCCCeeEEEEE
Confidence 4567889999988775
No 19
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus}
Probab=58.80 E-value=21 Score=32.31 Aligned_cols=74 Identities=15% Similarity=0.117 Sum_probs=53.4
Q ss_pred CCCeeEEEEEEEcCCCCceEEEEeCcccccc--hhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcE
Q 023783 187 PGESALAFYTAENRSSTPITGVSTYNVTPMK--AAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINN 264 (277)
Q Consensus 187 PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~--Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~t 264 (277)
.|....+.++..|.++.++++..+ .+.|.. . .++. ++-= =.+.+++||+++...+.+-+--... +.-.
T Consensus 66 ~~~~g~i~L~~gNKs~~~it~f~~-~i~~~~~~~-~~l~-~~~~-~~~~tI~p~~q~qq~i~v~~~~pF~------~~P~ 135 (273)
T 3hs8_A 66 RQNLGRMFIFYGNKTSTQFLNFTP-TLICADDLQ-TNLN-LQTK-PVDPTVDGGAQVQQVVNIECISDFT------EAPV 135 (273)
T ss_dssp ETTEEEEEEEEEECSSSCBBSCCC-EEECCTTHH-HHEE-EEEC-CCCSCBCTTCEEEEEEEEEECSCCC------CCCE
T ss_pred eCceEEEEEEEEcCCCCcceeEEE-EEECCCCCC-cceE-EEec-CCCCeECCCCEEEEEEEEEEccccc------CCCE
Confidence 466788888999999999998776 555433 2 2443 2211 3358999999999999997754443 3789
Q ss_pred EEEEEE
Q 023783 265 LILSYT 270 (277)
Q Consensus 265 ITLSYT 270 (277)
|.+||+
T Consensus 136 l~isf~ 141 (273)
T 3hs8_A 136 LNIQFR 141 (273)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999997
No 20
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=56.53 E-value=85 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=35.9
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcc
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV 213 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynV 213 (277)
.+++++|+-.+. .|.|.| .++.|..|++++. .++|. ..+-+-++|+.
T Consensus 75 ~~~~v~V~m~a~-----~~~f~P--n~l~VP~G~~Vr~--~vTS~--DViHsf~IP~l 121 (168)
T 3s8f_B 75 GPNQYTVYVLAF-----AFGYQP--NPIEVPQGAEIVF--KITSP--DVIHGFHVEGT 121 (168)
T ss_dssp ETTEEEEEEEEE-----TTEEES--SSEEEETTSEEEE--EEECS--SSCEEEEETTS
T ss_pred CCCeEEEEEEEE-----eceEec--CEEEEeCCCeEEE--EEecC--CceEEEEECCC
Confidence 468999999873 689998 5799999997664 45553 57888888764
No 21
>2q9r_A Protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.91A {Shewanella baltica}
Probab=55.13 E-value=5.8 Score=34.98 Aligned_cols=25 Identities=16% Similarity=0.359 Sum_probs=20.6
Q ss_pred HHHHHhheechhhHHHHHHHhcCCc
Q 023783 110 FAMVGSTYAAVPLYRRFCQATGYGG 134 (277)
Q Consensus 110 v~Mfgf~fA~VPLY~~FC~vTG~~G 134 (277)
++|.+++==+.|=|.+||++||+|.
T Consensus 22 ~F~aaLcERM~PNY~lF~e~tef~d 46 (200)
T 2q9r_A 22 LFATALCQRMLPNYQLFSEVCEFGD 46 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHhCccHHHHHHHHCCCC
Confidence 4566666678899999999999974
No 22
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=52.42 E-value=44 Score=24.05 Aligned_cols=59 Identities=20% Similarity=0.389 Sum_probs=32.8
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcc-cccchhccccccccccccccccCCCCeEec
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV-TPMKAAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynV-tP~~Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
.+.|.|. .++|++|++.. | .|.++.+ -...+..- .|..+.. .++. ++...|.|||+.+.
T Consensus 12 ~~~F~P~--~i~v~~G~~V~--~--~n~~~~~-H~~~~~~~~~p~~~~~--~~~~---~~~~~~~pG~~~~~ 71 (98)
T 2plt_A 12 ALEFVPK--TLTIKSGETVN--F--VNNAGFP-HNIVFDEDAIPSGVNA--DAIS---RDDYLNAPGETYSV 71 (98)
T ss_dssp CSSEESS--EEEECTTCEEE--E--EECSSCC-EEEEECGGGSCTTCCH--HHHC---EEEEECSTTCEEEE
T ss_pred CceEeCC--EEEECCCCEEE--E--EECCCCc-eEEEEeCCCCCCcccc--cccc---ccceecCCCCEEEE
Confidence 5788895 59999999764 3 6876432 22222221 1211100 0111 34568899998776
No 23
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=49.39 E-value=55 Score=23.56 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=32.3
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcc-cccc-hhccccccccccccccccCCCCeEec
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV-TPMK-AAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynV-tP~~-Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
.+.|.|. .++|++|++.. + .|.++.+ -...+..- .|+. +..+ . ++...|.|||+.+.
T Consensus 13 ~~~F~P~--~i~v~~G~~V~--~--~n~~~~~-H~~~~~~~~~pg~~~~~~-~------~~~~~~~pG~~~~~ 71 (98)
T 1pcs_A 13 ALVFEPS--TVTIKAGEEVK--W--VNNKLSP-HNIVFDADGVPADTAAKL-S------HKGLLFAAGESFTS 71 (98)
T ss_dssp CSSEESS--EEEECTTCEEE--E--EECSSCC-EEEEECCSSSCHHHHHHH-C------EEEEECSTTCEEEE
T ss_pred ccEEeCC--EEEECCCCEEE--E--EECCCCC-cEEEEeCCCCCccccccc-c------ccccccCCCCEEEE
Confidence 5788895 58999999765 3 3765322 22222221 2311 1111 1 45678999999875
No 24
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=47.89 E-value=32 Score=33.06 Aligned_cols=68 Identities=13% Similarity=0.198 Sum_probs=45.2
Q ss_pred ecCCCeeEEEEEEEcCCCCceEEEE-----eCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCC
Q 023783 185 VKPGESALAFYTAENRSSTPITGVS-----TYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFET 255 (277)
Q Consensus 185 V~PGE~~l~fY~a~N~sd~pi~GqA-----vynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~ 255 (277)
-.|||++.+...+.|.|+++|..+- .-.+.-...+.|=+-+..-.+.| ++.||.+ +-=.|.+-|-+.+
T Consensus 224 Y~pGE~I~V~v~I~N~Ssk~Vk~Ikv~L~Q~~~v~l~s~~~y~~~Va~~E~~e-pV~pgst--~~k~~~l~P~l~~ 296 (380)
T 3ugu_A 224 YYHGEPIPVTVAVTNSTEKTVKKIKVLVEQVTNVVLYSSDYYIKTVAAEEAQE-KVPPNSS--LTKTLTLVPLLAN 296 (380)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEEEEEEEEECSSSCCEEEEEEEEEECSC-CBCTTEE--EEEEEEECCCGGG
T ss_pred CcCCCEEEEEEEEEcCCCCeEeEEEEEEEEEEEEEEecCCeEEEEEEEeccCC-cCCCCCe--EEeeEEEEEeccc
Confidence 3689999999999999999987642 22233333444433332223344 7899987 6677878887654
No 25
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=45.41 E-value=16 Score=26.27 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=27.0
Q ss_pred Ccchhhhhcccccch---hh-hhhHHHHHHHHHHHHHHHhheechhh
Q 023783 80 SFSSFQRHYASHAST---EQ-KSRKMLLYLTALVFAMVGSTYAAVPL 122 (277)
Q Consensus 80 s~~~~~R~~~~~~~~---~~-~n~~~~~~l~~v~v~Mfgf~fA~VPL 122 (277)
-+.+.||+|..+... .+ .....+++-+.+++.++|.++++.=|
T Consensus 4 kV~e~Qk~FQ~~~g~pv~lKgg~sd~~Ly~~t~~l~~~g~~~~~y~l 50 (59)
T 1v54_J 4 RVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCL 50 (59)
T ss_dssp CHHHHHHHHHCSSCCCTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhcCCCCceeEeecCcCceeHHHHHHHHHHHHHHHHHHHH
Confidence 467889999876652 12 12344556666777888877774433
No 26
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=43.91 E-value=47 Score=31.45 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=41.9
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEe--Ccc---cccchhccccccccccccccccCCCCeEeccEEEEeCCCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVST--YNV---TPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFE 254 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAv--ynV---tP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~ 254 (277)
--.|||++.+...+.|.|++.|...-+ ... +=...+.|=+.+.-.-. ...+.||.+.. -.|.|=|.++
T Consensus 207 ~Y~pGE~I~v~v~I~N~S~k~Vk~Ikv~L~Q~~~~~~~s~~~~k~~Va~~e~-~~~V~~gs~~~--~~~~L~P~l~ 279 (393)
T 1g4m_A 207 IYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEA-DDTVAPSSTFC--KVYTLTPFLA 279 (393)
T ss_dssp EEETTCCEEEEEEEEECSSCCEEEEEEEEEEEEEECSSBCEEEEEEEEEEEE-CCCBCTTEEEE--EEEEECCCGG
T ss_pred eEcCCCEEEEEEEEEcCCCCEEeEEEEEEEEEEEEEEecCCceEEEEEEEec-CCcCCCCCEEe--eEEEEcCCCC
Confidence 346999999999999999999987432 211 11122333322222111 23789998864 4577766665
No 27
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=41.16 E-value=64 Score=23.47 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=36.7
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCC--CceEEEEeCcccccchhcccccccccc-cccccc
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS--TPITGVSTYNVTPMKAAVYFNKIQCFC-FEEQRL 235 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd--~pi~GqAvynVtP~~Ag~YF~KieCFC-F~eQ~L 235 (277)
+++|.-.++ +-.+.|.| ..++|++|++... .|.++ +.+.-.. .. .|.+.|.- ...+ ++...|
T Consensus 3 t~~V~~~~~---~~~~~F~P--~~i~v~~Gd~V~~----~n~~~~~H~~~~~~-~~-~~~~~g~~----~~~~~~~~~~~ 67 (106)
T 2gim_A 3 TYTVKLGSD---KGLLVFEP--AKLTIKPGDTVEF----LNNKVPPHNVVFDA-AL-NPAKSADL----AKSLSHKQLLM 67 (106)
T ss_dssp EEEEEESCT---TCCSSEES--SEEEECTTCEEEE----EECSSSCCCBEECS-SS-STTCCHHH----HHHHCBCSCCC
T ss_pred cEEEEEEec---CCcceEcC--CEEEECCCCEEEE----EECCCCCceEEEeC-CC-Cccccccc----chhccccceee
Confidence 455655321 12588999 4689999997643 37653 4433110 00 12110100 0001 456789
Q ss_pred CCCCeEec
Q 023783 236 LPGEQIDM 243 (277)
Q Consensus 236 ~pGE~vdM 243 (277)
.|||+.+.
T Consensus 68 ~pG~~~~~ 75 (106)
T 2gim_A 68 SPGQSTST 75 (106)
T ss_dssp STTCEEEE
T ss_pred CCCCEEEE
Confidence 99998765
No 28
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H cell surface, transport protein; HET: HEC; 1.76A {Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Probab=40.20 E-value=15 Score=35.16 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=18.9
Q ss_pred EEecCCCeeEEEEEEEcCCCCceEEE
Q 023783 183 VRVKPGESALAFYTAENRSSTPITGV 208 (277)
Q Consensus 183 v~V~PGE~~l~fY~a~N~sd~pi~Gq 208 (277)
+.|.-| +..|.|.++|..+.||+|.
T Consensus 61 ~~~~~g-~~~v~f~~~n~~g~~v~gl 85 (874)
T 3ucp_A 61 VKIDNG-TVSVDIVLTNANGVPVTGL 85 (874)
T ss_dssp EEEETT-EEEEEEEEECTTCCBEECG
T ss_pred EEeeCC-cEEEEEEEECCCCCeeecc
Confidence 334334 4779999999999999875
No 29
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=38.93 E-value=68 Score=23.16 Aligned_cols=24 Identities=29% Similarity=0.778 Sum_probs=18.0
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
.+.|.|. .++|++|+++. | +|.++
T Consensus 11 ~~~F~P~--~i~v~~G~tV~--~--~n~~~ 34 (99)
T 1plc_A 11 SLAFVPS--EFSISPGEKIV--F--KNNAG 34 (99)
T ss_dssp CSCEESS--EEEECTTCEEE--E--EECSS
T ss_pred cceEeCC--EEEECCCCEEE--E--EECCC
Confidence 5788884 78999999664 3 67764
No 30
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=38.05 E-value=25 Score=26.84 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=29.8
Q ss_pred cCcchhhhhcccccch---hhh-hhHHHHHHHHHHHHHHHhheechhhH
Q 023783 79 NSFSSFQRHYASHAST---EQK-SRKMLLYLTALVFAMVGSTYAAVPLY 123 (277)
Q Consensus 79 ~s~~~~~R~~~~~~~~---~~~-n~~~~~~l~~v~v~Mfgf~fA~VPLY 123 (277)
.-+.+.||+|..+... .+. ....+++-+.+++.++|.++.+.=||
T Consensus 24 NkVpe~Qk~FQ~~~g~PV~lKggrsd~~Ly~~t~~l~~~G~~~~ly~l~ 72 (80)
T 2y69_J 24 NRVAEKQKLFQEDNGLPVHLKGGATDNILYRVTMTLCLGGTLYSLYCLG 72 (80)
T ss_dssp CCHHHHHHHHTCSSCCCGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhcCCCCceeeeecCccceeHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999987652 122 23456666777778888877754444
No 31
>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae}
Probab=37.75 E-value=63 Score=29.03 Aligned_cols=55 Identities=13% Similarity=0.074 Sum_probs=38.3
Q ss_pred EEEEEEEe-cCCCC---CCeEEEccccEEEecC-CCeeEEEEEEEcCCCCceE----EEEeCccc
Q 023783 159 EVVVQFNA-DVADG---MPWKFIPTQREVRVKP-GESALAFYTAENRSSTPIT----GVSTYNVT 214 (277)
Q Consensus 159 ~I~V~F~A-~v~~~---lPW~F~P~q~~v~V~P-GE~~l~fY~a~N~sd~pi~----GqAvynVt 214 (277)
.|+.++.. +...+ .||.|+-... .++.. +....+.|.|+|.+|+++. ...-+|+.
T Consensus 119 ~v~l~l~~~~~~~g~~~yP~~~~~~vt-y~L~~~~~~L~i~~~~~N~~d~~~p~~~~~H~YFnl~ 182 (342)
T 1yga_A 119 VVEFKLLDDHTQPNPNEFPGDLEVTVK-YTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLN 182 (342)
T ss_dssp EEEEEEEECSSSSSCCCSSSEEEEEEE-EEEETTTTEEEEEEEEEEEESSEEECBCEECCCBCTT
T ss_pred EEEEEEECCcccCCCcCCCeEEEEEEE-EEEeCCCCEEEEEEEEEeCCCCceEEeeeccceEEcC
Confidence 47777776 34556 8999997754 34553 4688999999999999864 33334664
No 32
>3os7_A Galactose mutarotase-like protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: PG4 TLA; 1.80A {Clostridium acetobutylicum}
Probab=36.00 E-value=82 Score=28.47 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=32.4
Q ss_pred EEEEEEEecCCC----CCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVAD----GMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~----~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
.|+++|....++ +.|+.|+-... .++. +....+.|.|+|.+|+++.
T Consensus 130 ~v~~~~~~~d~~~~~~g~P~~~~~~v~-y~L~-~~~L~i~~~~~N~~~~~~p 179 (341)
T 3os7_A 130 LVEVVFDFTKENEAYKYFSHEFQFKLS-YELS-SKGLKQTTSVVNLSSEEMP 179 (341)
T ss_dssp EEEEEEEECTTSTTTTTSCCCEEEEEE-EEEE-TTEEEEEEEEEECSSSCEE
T ss_pred EEEEEEEeCCCcchhhcCCceEEEEEE-EEEe-CCeEEEEEEEEeCCCCcEE
Confidence 466677643333 78999987644 3444 3567799999999999874
No 33
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=35.69 E-value=71 Score=25.62 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=36.3
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccE
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPV 245 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV 245 (277)
.+.+|+.+.+.-.++|....+..+.. ...|.+...+-=- ...|.|||+....+
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~--------V~lyvng~~v~t~-~v~La~G~s~tv~f 80 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTK--------VRVYINGTLYKNW-TVSLGPKEEKVLTF 80 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEE--------EEEEETTEEEEEE-EEEECTTCEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCccCCcE--------EEEEECCEEEeeE-EeccCCCCeEEEEE
Confidence 67899999999999999999976533 2345555444321 23588988765433
No 34
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=35.23 E-value=48 Score=25.82 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=24.2
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
.+++|+|. + ... .+.|.| ..++|++|+++++ ..+|.+.
T Consensus 17 ~~~~V~v~--~-~~~--~~~F~p--~~i~v~~G~~V~~--~~~N~~~ 54 (139)
T 2aan_A 17 GPVTIEIG--S-KGE--ELAFDK--TELTVSAGQTVTI--RFKNNSA 54 (139)
T ss_dssp CCEEEEEE--B-CTT--SSSBSC--SEEEECTTCEEEE--EEECCCS
T ss_pred cCEEEEEE--e-cCC--ccEEcC--CeEEECCCCEEEE--EEEeCCC
Confidence 34667763 2 222 577888 4688999987654 5567754
No 35
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=34.84 E-value=66 Score=29.75 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=42.6
Q ss_pred EecCCCeeEEEEEEEcCCCCceEEEEeCcccccchh---ccccccccccccccccCCCCeEeccEEEEeCCC
Q 023783 184 RVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAA---VYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 184 ~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag---~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPe 252 (277)
.|.-|+...-...++|++.-|..=.-++. |.+.. .++. ++ =.+=+|.|||++++-|.++||.+
T Consensus 41 ~v~~~~~~~~~l~i~N~g~~pa~f~f~~~--~~~~~~~~~wl~-v~---p~~g~l~Pge~~~i~l~~~v~~~ 106 (366)
T 3qis_A 41 NVKFRQLQKEKFQISNNGQVPCHFSFIPK--LNDSQYCKPWLR-AE---PFEGYLEPNETVDISLDVYVSKD 106 (366)
T ss_dssp EECBTCCEEEEEEEEECSSSCEEEEEECC--TTCSSSSCTTEE-EE---SCEEEECTTCEEEEEEEECBCTT
T ss_pred eeeeCCeEEEEEEEEecCCceEEEEEEeC--CCCCCCCCCcEE-Ee---CCccEECCCCEEEEEEEEEECHH
Confidence 48889999999999999988865544432 11100 0111 11 12348999999999999999983
No 36
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=34.76 E-value=93 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=17.7
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
.+.|.|. .++|++|++.. | +|.++
T Consensus 11 ~~~F~P~--~i~v~~G~tV~--~--~n~~~ 34 (99)
T 1byp_A 11 GLAFVPS--DLSIASGEKIT--F--KNNAG 34 (99)
T ss_dssp CCSEESS--EEEECTTEEEE--E--EECSS
T ss_pred cceEeCC--EEEECCCCEEE--E--EECCC
Confidence 5788885 58899999743 3 67764
No 37
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=33.22 E-value=88 Score=24.49 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=24.4
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
+++|.-......+ .+.|.|. .++|.+|+++ .|...|. .+.++
T Consensus 2 t~~V~m~~~g~~g-~~~F~P~--~i~V~~GdtV--~f~n~~~-~H~v~ 43 (123)
T 1pmy_A 2 EVAVKMLNSGPGG-MMVFDPA--LVRLKPGDSI--KFLPTDK-GHNVE 43 (123)
T ss_dssp EEEEEEEEEETTE-EEEEESS--EEEECTTCEE--EEECSSS-SCCCE
T ss_pred eEEEEEEeccCCC-CceEeCC--EEEECCCCEE--EEEECCC-CcEEE
Confidence 4555552222223 6899996 6889999974 4544443 34443
No 38
>3nre_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.59A {Escherichia coli}
Probab=33.09 E-value=96 Score=27.46 Aligned_cols=44 Identities=5% Similarity=0.193 Sum_probs=32.9
Q ss_pred cEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 158 REVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
..|+.++..+ . .||.|+-... .++. +....+.|.|+|.+|+++.
T Consensus 100 ~~v~l~l~~~--~-~P~~~~~~v~-y~L~-~~~L~i~~~~~N~~~~~~~ 143 (291)
T 3nre_A 100 DSLCLVYEHR--S-GVYHYRVSQA-FHLT-ADTLTVTLSVTNQGAETLP 143 (291)
T ss_dssp SEEEEEEEEE--S-SSCEEEEEEE-EEEC-SSEEEEEEEEEECSSSCEE
T ss_pred CEEEEEEeCC--C-CCceEEEEEE-EEEe-CCeEEEEEEEEECCCCCcc
Confidence 3577777664 5 9999986643 3454 5678899999999999865
No 39
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=33.06 E-value=1.3e+02 Score=21.49 Aligned_cols=72 Identities=21% Similarity=0.331 Sum_probs=37.3
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCcc-cccchhccccccccccccccccCC
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYNV-TPMKAAVYFNKIQCFCFEEQRLLP 237 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynV-tP~~Ag~YF~KieCFCF~eQ~L~p 237 (277)
+|+|.-.++ +--+.|.| ..++|++|++.. ..|..+.+- ...+-.. .|.+-+.- -.=+-+++..+.|
T Consensus 2 t~~V~~~~~---~~~~~f~p--~~i~v~~Gd~V~----~~N~~~~~H-~v~~~~~~~~~~~g~~---~~~~~~~~~~i~p 68 (105)
T 3cvb_A 2 TFTVKMGAD---SGLFQFEP--ANVTVHPGDTVK----WVNNKLPPH-NILFDDKQVPGASKEL---ADKLSHSQLMFSP 68 (105)
T ss_dssp EEEEEESCT---TCCSCEES--SEEEECTTEEEE----EEECSSCCE-EEEECTTSSGGGCHHH---HHHHCEEEEECST
T ss_pred eEEEEEeec---CCccEEeC--CEEEEcCCCEEE----EEECCCCCC-eEEEeCCCCCcccccc---cccccccccccCC
Confidence 455555321 12567877 468999999864 258765432 2222221 22210000 0001146678999
Q ss_pred CCeEec
Q 023783 238 GEQIDM 243 (277)
Q Consensus 238 GE~vdM 243 (277)
||+.+.
T Consensus 69 G~~~~~ 74 (105)
T 3cvb_A 69 GESYEI 74 (105)
T ss_dssp TCEEEE
T ss_pred CCeEEE
Confidence 998864
No 40
>3q1n_A Galactose mutarotase related enzyme; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.61A {Lactobacillus casei}
Probab=32.92 E-value=43 Score=29.69 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=35.6
Q ss_pred cEEEEEEEecC--CCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEE
Q 023783 158 REVVVQFNADV--ADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGV 208 (277)
Q Consensus 158 R~I~V~F~A~v--~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~Gq 208 (277)
..|+.++..+- ..+.|+.|+-... .++. +....+.|.|+|.+|+++.-.
T Consensus 89 ~~v~l~l~~~~~~~~~yP~~~~~~v~-y~L~-~~~L~i~~~~~N~~~~~~p~~ 139 (294)
T 3q1n_A 89 SAVTFTQHQNAETLKKFPFEYTLAVT-YMLT-DGGLSVHYTVTNDDSKSMPFA 139 (294)
T ss_dssp SEEEEEEECCHHHHHHSCCCEEEEEE-EEEE-TTEEEEEEEEEECSSSCEEEC
T ss_pred CEEEEEEEcCcchhhcCCeEEEEEEE-EEEe-CCEEEEEEEEEcCCCCceeee
Confidence 35777776543 3578999987744 3444 578899999999999987543
No 41
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=32.73 E-value=71 Score=28.15 Aligned_cols=47 Identities=11% Similarity=0.155 Sum_probs=35.0
Q ss_pred EEEEEEEec--CCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEE
Q 023783 159 EVVVQFNAD--VADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITG 207 (277)
Q Consensus 159 ~I~V~F~A~--v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~G 207 (277)
.|+.++..+ ...+-|+.|+-..+ .++. |....+.|.++|.+|+++.-
T Consensus 111 ~v~l~l~~~~~~~~~~P~~~~~~~~-y~L~-~~~L~i~~~~~N~~~~~~~~ 159 (289)
T 3k25_A 111 RLDLRLSHNDATLEAFPFAFELVFS-YQLQ-GHSLRIEQRIANLGDQRMPF 159 (289)
T ss_dssp EEEEEEECCHHHHTTSCSCEEEEEE-EEEE-TTEEEEEEEEEECSSSCEEE
T ss_pred EEEEEEecChhHHhcCCceEEEEEE-EEEe-CCEEEEEEEEEcCCCCccee
Confidence 566666654 24688999987643 4454 67889999999999998753
No 42
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=32.23 E-value=35 Score=26.61 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.5
Q ss_pred cccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEc
Q 023783 156 TTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAEN 199 (277)
Q Consensus 156 ~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N 199 (277)
..++|+|.-.. . .|.|.| ..++|++|++++ +..+|
T Consensus 15 ~~~~v~V~~~~---~--~~~F~P--~~i~v~~G~tV~--~~~~N 49 (140)
T 1qhq_A 15 PAQTVEVRAAP---D--ALAFAQ--TSLSLPANTVVR--LDFVN 49 (140)
T ss_dssp CSEEEEEEBCS---S--SSSBSC--SEEEEETTCEEE--EEEEE
T ss_pred CCEEEEEEEeC---C--CceEeC--CeEEECCCCEEE--EEEEC
Confidence 46888886431 1 488888 579999998665 45567
No 43
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=31.27 E-value=72 Score=23.71 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=27.8
Q ss_pred cccccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEE
Q 023783 154 TVTTREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTA 197 (277)
Q Consensus 154 vd~~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a 197 (277)
+....+|+++|.......=-|.+.....++.+.|||+..+.|.+
T Consensus 42 v~~G~~V~~~~~n~d~~~H~~~i~~~~~~~~i~pG~~~~~~f~~ 85 (112)
T 1iby_A 42 VKKGDAVKVVVENKSPISEGFSIDAFGVQEVIKAGETKTISFTA 85 (112)
T ss_dssp EETTCEEEEEEEECSSSCEEEEEGGGTEEEEECTTCEEEEEEEC
T ss_pred EeCCCEEEEEEEECCCCeEEEEEcCCCceeEeCCCCEEEEEEEC
Confidence 34567888888643321123444444457789999999988865
No 44
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=31.25 E-value=1.5e+02 Score=21.42 Aligned_cols=59 Identities=19% Similarity=0.329 Sum_probs=31.7
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCc-ccccchhccccccccccccccccCCCCeEec
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYN-VTPMKAAVYFNKIQCFCFEEQRLLPGEQIDM 243 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvyn-VtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdM 243 (277)
.+.|.|. .++|++|+++.. .|....+= ...+.. -.|..+.. ..+. ++...|.|||+.+.
T Consensus 12 ~~~F~P~--~i~v~~GdtV~~----~n~~~~~H-~v~~~~~~~p~g~~~--~~~~---~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 12 SLAFVPS--KISVAAGEAIEF----VNNAGFPH-NIVFDEDAVPAGVDA--DAIS---YDDYLNSKGETVVR 71 (98)
T ss_dssp CCSEESS--EEEECTTCEEEE----EECSSCCE-EEEECTTSSCTTCCH--HHHC---EEEEECSTTCEEEE
T ss_pred CcEEeCC--EEEECCCCEEEE----EECCCCCE-EEEEeCCCCcccccc--cccc---ccccccCCCCEEEE
Confidence 5889995 789999998543 36653222 222222 22322110 0000 23357899998765
No 45
>2h1t_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.80A {Pseudomonas aeruginosa} SCOP: b.178.1.1
Probab=30.88 E-value=54 Score=28.46 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=27.2
Q ss_pred cCCCCeEeccEEEEeCCCCCCCcCCCCCcEEEEEEEee
Q 023783 235 LLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFF 272 (277)
Q Consensus 235 L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tITLSYTFF 272 (277)
|.+||..++||.|+==|++- |..+..+||--
T Consensus 121 L~~g~~~~i~vayV~~P~l~-------V~~~~Q~Yt~~ 151 (188)
T 2h1t_A 121 LADGQRAEIRALYIEAPALE-------PRSMRQAYTRL 151 (188)
T ss_dssp CCTTCEEEEEEEEEETTTTC-------CEEEEEEEEEE
T ss_pred cccCCceEEEEEEEECCCce-------EEEeeeEEEec
Confidence 59999999999999888875 89999999853
No 46
>3mwx_A Aldose 1-epimerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, isomerase; HET: MSE; 1.45A {Bacillus subtilis}
Probab=30.82 E-value=62 Score=28.93 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=34.0
Q ss_pred cEEEEEEEecCCC----CCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 158 REVVVQFNADVAD----GMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 158 R~I~V~F~A~v~~----~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
..|+++|....++ +.||.|.-... .++. +....+.|.++|.+|+++.
T Consensus 122 ~~v~~~~~~~~~~~~~~g~P~~~~~~v~-y~L~-~~~L~i~~~~~N~~~~~~~ 172 (326)
T 3mwx_A 122 VIVETEIDLSELPHVQKQFPHHAVVRMT-YTIK-ENTLFKHATVMNKGKEAFP 172 (326)
T ss_dssp EEEEEEEEGGGCHHHHHHSCSCEEEEEE-EEEE-TTEEEEEEEEEECSSSCEE
T ss_pred eEEEEEEEeCCCCccccCCCceEEEEEE-EEEc-CCcEEEEEEEEECCCCcee
Confidence 3577788754433 78999987644 3444 4567899999999999865
No 47
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=29.91 E-value=69 Score=31.21 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=35.6
Q ss_pred ecCCCeeEEEEEEEcCCCCceEEE---------EeCcccccc--hhcccc---ccccccccccccCCCCeEeccE
Q 023783 185 VKPGESALAFYTAENRSSTPITGV---------STYNVTPMK--AAVYFN---KIQCFCFEEQRLLPGEQIDMPV 245 (277)
Q Consensus 185 V~PGE~~l~fY~a~N~sd~pi~Gq---------AvynVtP~~--Ag~YF~---KieCFCF~eQ~L~pGE~vdMPV 245 (277)
=.||-+..+...++|++|+|+.=. .-++|.|.. -..|+- -++ -.. +++|||++++-|
T Consensus 294 ~vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~---s~~-pI~PGETrt~~V 364 (419)
T 3rfr_A 294 KVPGRELTINVKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS---NDD-VIAPGESKEIVV 364 (419)
T ss_dssp ESSSSEEEEEEEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC---CCC-CBCTTCEEEEEE
T ss_pred ecCCcEEEEEEEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC---CCC-CcCCCcceEEEE
Confidence 357888888899999999998532 123333322 112221 244 344 999999999843
No 48
>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus}
Probab=28.52 E-value=55 Score=29.37 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=35.4
Q ss_pred cEEEEEEEec--CCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEE
Q 023783 158 REVVVQFNAD--VADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITG 207 (277)
Q Consensus 158 R~I~V~F~A~--v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~G 207 (277)
..|+.++..+ ...+.||.|+-... .++. |....+.|.|+|.+|+++.=
T Consensus 89 ~~v~l~l~~~~~~~~~yP~~~~~~v~-y~L~-~~~L~i~~~v~N~g~~~~p~ 138 (307)
T 3dcd_A 89 ESITFLLKDNEETRKVYPFKFEFRVN-YNLM-NNLLEENFSVVNKSDETMIF 138 (307)
T ss_dssp TEEEEEEECCHHHHHHSCCCEEEEEE-EEEE-TTEEEEEEEEEECSSSCEEE
T ss_pred CEEEEEEecCcchhhhCCCceEEEEE-EEEe-CCEEEEEEEEECCCCCcEeE
Confidence 3566666653 34578999987754 3455 78889999999999998753
No 49
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=28.12 E-value=44 Score=26.47 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=27.0
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
+++|+-....++| .+.|.|. .++|++|++ |.|..+|. .+.++
T Consensus 2 ~~~V~m~~~g~~G-~~~F~P~--~i~V~~Gdt--V~f~~~~~-~H~v~ 43 (123)
T 3erx_A 2 THEVHMLNKGESG-AMVFEPA--FVRAEPGDV--INFVPTDK-SHNVE 43 (123)
T ss_dssp EEEEEEEEEETTE-EEEEESS--EEEECTTEE--EEEEESST-TCCCE
T ss_pred cEEEEEEecCCCC-cEeEeCC--EEEECCCCE--EEEEECCC-CceEE
Confidence 3455554333333 6899995 789999997 55666673 45555
No 50
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=27.52 E-value=1.5e+02 Score=23.05 Aligned_cols=42 Identities=17% Similarity=0.432 Sum_probs=25.3
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
+++|.-.....++ .+.|.|. .++|.+|+++ .|...|. .+.++
T Consensus 2 t~~V~m~~~g~~g-~~~F~P~--~i~V~~GdtV--~f~~~~~-~H~v~ 43 (123)
T 1paz_A 2 NIEVHMLNKGAEG-AMVFEPA--YIKANPGDTV--TFIPVDK-GHNVE 43 (123)
T ss_dssp EEEEEEEEEETTE-EEEEESS--EEEECTTCEE--EEEESSS-SCCCE
T ss_pred eEEEEEEeccCCC-CceEeCC--EEEECCCCEE--EEEECCC-CeEEE
Confidence 3555553222223 6899996 6889999985 4555454 34444
No 51
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=27.44 E-value=91 Score=30.03 Aligned_cols=60 Identities=22% Similarity=0.151 Sum_probs=35.9
Q ss_pred cCCCeeEEEEEEEcCCCCceEEE--EeCc----------ccccchhccccccccccccccccCCCCeEeccE
Q 023783 186 KPGESALAFYTAENRSSTPITGV--STYN----------VTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPV 245 (277)
Q Consensus 186 ~PGE~~l~fY~a~N~sd~pi~Gq--Avyn----------VtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV 245 (277)
.||-+..+...++|.+|+|+.=- .+-| ..|+---.+.++=.=---...+++|||++++-|
T Consensus 261 vpgR~l~~~~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~PGETr~~~v 332 (382)
T 1yew_A 261 VPGRAMRMKLTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAPGETRTVDV 332 (382)
T ss_dssp SSCSEEEEEEEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCTTCEEEEEE
T ss_pred cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCCCceeEEEE
Confidence 58888889999999999998532 1111 122211112221111223567799999999854
No 52
>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*
Probab=27.17 E-value=87 Score=27.42 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=40.6
Q ss_pred ecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhcccccccccccc-------c--cccCCCCeEeccEEEEeCCC
Q 023783 185 VKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFE-------E--QRLLPGEQIDMPVFFYIDPE 252 (277)
Q Consensus 185 V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~-------e--Q~L~pGE~vdMPV~F~IDPe 252 (277)
|..||...+--.+.|..++.+.+......+++ ||+. + -.+.||+.. .|.|-|-|.
T Consensus 92 v~rGE~~~l~~~V~Ny~~~~~~v~V~l~~~~~-----------~~~~~~~~~~~~~~v~v~a~~~~--~v~f~i~p~ 155 (252)
T 3hrz_B 92 VVKNEQVEIRAILHNYVNEDIYVRVELLYNPA-----------FCSASTKGQRYRQQFPIKALSSR--AVPFVIVPL 155 (252)
T ss_dssp EETTCCEEEEEEEEECSSSCEEEEEEECCCTT-----------EEESCCSSCCEEEEEEECTTEEE--EEEEEEEEC
T ss_pred EeeCCEEEEEEEEEcccCceEEEEEEEEcCCc-----------eEeecCCCCceEEEEEECCCCeE--EEEEEEEec
Confidence 56899999999999999999999988776653 3432 1 235676654 466777774
No 53
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=25.64 E-value=1.4e+02 Score=23.85 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=30.0
Q ss_pred cEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceEEEEeCc
Q 023783 158 REVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPITGVSTYN 212 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvyn 212 (277)
+.++|+-.+ -.|.|.|. ++.|..|++++. .++|. | .+-+.++++
T Consensus 44 ~~~~V~v~~-----~~~~f~P~--~l~Vp~G~~V~~--~vts~-D-V~Hsf~ip~ 87 (135)
T 2cua_A 44 NQYTVYVLA-----FAFGYQPN--PIEVPQGAEIVF--KITSP-D-VIHGFHVEG 87 (135)
T ss_dssp TEEEEEEEE-----ETTEEESS--SEEEETTSEEEE--EEEBS-S-SCEEEEETT
T ss_pred CCEEEEEEE-----EeCEEECC--EEEEcCCCEEEE--EEEeC-C-ccceEEecC
Confidence 567776654 36999984 799999998665 45554 3 456666554
No 54
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A
Probab=25.55 E-value=3.3e+02 Score=23.79 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred CCeeEEEEEEEcCCCCceEEEEeCcccccc-hhccccccccccccccccCCCCeEeccEEEEeCCCCCCCcCCCCCcEEE
Q 023783 188 GESALAFYTAENRSSTPITGVSTYNVTPMK-AAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLI 266 (277)
Q Consensus 188 GE~~l~fY~a~N~sd~pi~GqAvynVtP~~-Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~Dp~~~~v~tIT 266 (277)
|....+..+..|.++.++++..+--..|.. ...+=.+++ -.+.+++||++++-.+.+-+--... +.-.|.
T Consensus 41 ~~~gri~l~~gNKs~~~l~~f~~~i~~~~~~~~~l~~~~~---~~~~~I~~~~q~qq~i~v~~~~~f~------~~P~l~ 111 (247)
T 1kyf_A 41 QNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTK---PVDPTVDGGAQVQQVVNIECISDFT------EAPVLN 111 (247)
T ss_dssp TTEEEEEEEEEECSSSCBEEEEEEEECCHHHHHHEEEEEC---CCCSCBCTTCEEEEEEEEEECSCCC------CCCEEE
T ss_pred CCeEEEEEEEEcCCCCceeeEEEEEecCcccCCCeeEecC---CCCceeCCCcEEEEEEEEEEccccC------CCCEEE
Confidence 446677778889999999988885545542 111111111 1456799999999999888765554 367999
Q ss_pred EEEEe
Q 023783 267 LSYTF 271 (277)
Q Consensus 267 LSYTF 271 (277)
+||+.
T Consensus 112 isf~~ 116 (247)
T 1kyf_A 112 IQFRY 116 (247)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99964
No 55
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=23.53 E-value=66 Score=26.02 Aligned_cols=59 Identities=14% Similarity=0.223 Sum_probs=39.2
Q ss_pred cEEEEEEEecCCCCCCeEEEccccEEEe----------------cCCCeeEEEEEEEcCCCCceEEEEeCccccc
Q 023783 158 REVVVQFNADVADGMPWKFIPTQREVRV----------------KPGESALAFYTAENRSSTPITGVSTYNVTPM 216 (277)
Q Consensus 158 R~I~V~F~A~v~~~lPW~F~P~q~~v~V----------------~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~ 216 (277)
..|+|+|-....++..|+=...-..-.| .+-+.+.|+..+.|++|....----+-..|.
T Consensus 32 ~dikV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~L~r~sd~~~Sep~~FtY~P~ 106 (119)
T 1ikn_C 32 DDIQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVNITKPASVFVQLRRKSDLETSEPKPFLYYPE 106 (119)
T ss_dssp TSEEEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSCTTCSSCEEEEEEEEETTTCCBCCCEEEEEECC
T ss_pred CCCEEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCCCCcCCCEEEEEEEEcCCCCCccCCcccEeecC
Confidence 3799999987777889986655322222 2567788888888887765444444455553
No 56
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*
Probab=23.06 E-value=81 Score=28.60 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred CeEEEccccEEEecCCCeeEEEEEEE
Q 023783 173 PWKFIPTQREVRVKPGESALAFYTAE 198 (277)
Q Consensus 173 PW~F~P~q~~v~V~PGE~~l~fY~a~ 198 (277)
.-+.+|+.-.++++||+++.....++
T Consensus 73 ~vQi~PQ~v~l~LRpGd~vsF~V~vr 98 (280)
T 2p26_A 73 QKQLSPQKVTLYLRPGQAAAFNVTFR 98 (280)
T ss_dssp CSSEECSEEEEEECTTCCEEEEEEEC
T ss_pred eeeeccceEEEEecCCCeEEEEEEEE
Confidence 36899999999999999998777776
No 57
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=22.63 E-value=1.3e+02 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=15.6
Q ss_pred cccCCCCeEeccEEEEeCCCCCCC
Q 023783 233 QRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 233 Q~L~pGE~vdMPV~F~IDPei~~D 256 (277)
++|+||++-.+=+. +..+.+|.|
T Consensus 87 ~rl~pg~~q~lRI~-~~~~~LP~D 109 (257)
T 3q48_A 87 TRVEPNGGAVLRIA-YLKAPLPTD 109 (257)
T ss_dssp EEECTTEEEEEEEE-ECCCCCCSS
T ss_pred EEECCCCceEEEEE-ECCCCCCCC
Confidence 46888888777665 445567776
No 58
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=21.84 E-value=1e+02 Score=24.52 Aligned_cols=43 Identities=26% Similarity=0.475 Sum_probs=26.6
Q ss_pred EEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCCCceE
Q 023783 159 EVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSSTPIT 206 (277)
Q Consensus 159 ~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd~pi~ 206 (277)
++.|+-...-.++-...|.|. .++|++|+++ .|..+|. .+.++
T Consensus 3 ~~~V~ml~~g~~g~~~~F~P~--~i~V~~GDtV--tf~n~~~-~H~v~ 45 (127)
T 3tu6_A 3 EYRVEMLNKAADGRVMAFEPA--VIRAQPGDTV--TFVAKDK-GHNSA 45 (127)
T ss_dssp EEEEEEEEECTTSCEEEEESS--EEEECTTCEE--EEECSSS-SCCCE
T ss_pred cEEEEEEEcCCCCcccEEeCC--EEEECCCCEE--EEEECCC-CceEE
Confidence 455665332233336899995 7889999985 4555564 45544
No 59
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=21.81 E-value=91 Score=23.26 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=22.8
Q ss_pred ccEEEEEEEecCCCCCCeEEEccccEEEecCCCeeEEEEEEEcCCC
Q 023783 157 TREVVVQFNADVADGMPWKFIPTQREVRVKPGESALAFYTAENRSS 202 (277)
Q Consensus 157 ~R~I~V~F~A~v~~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~sd 202 (277)
.++++|.-. .+.|.| ..+.|++|+++. |. |..+
T Consensus 19 ~~~~~V~~~-------~~~F~P--~~i~V~~G~tV~--~~--N~d~ 51 (106)
T 1id2_A 19 ADAVVVGIE-------KMKYLT--PEVTIKAGETVY--WV--NGEV 51 (106)
T ss_dssp TTCEEEEEE-------TTEESS--SEEEECTTCEEE--EE--ECSS
T ss_pred CccEEEEEE-------ecEEeC--CEEEECCCCEEE--EE--ECCC
Confidence 356666653 378999 489999999874 33 6654
No 60
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=21.07 E-value=62 Score=24.96 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCCCCC
Q 023783 193 AFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETD 256 (277)
Q Consensus 193 ~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei~~D 256 (277)
=.+.+.|.++++..=+- +|.-..+...-.. .+-.+.|||..++||+--++|+..++
T Consensus 35 Ytlki~Nkt~~~~~~~l--~v~g~~~l~~~g~------~~i~v~~g~~~~~~v~v~~~~~~~~~ 90 (118)
T 2r39_A 35 YTLKVINKTQQVQEYNL--DVKGLNDVSWYGK------QTIQVEPGEVLNLPMSLGADPDKLNS 90 (118)
T ss_dssp EEEEEEECSSSCEEEEE--EEESCSSCEEESC------CEEEECTTCEEEEEEEEEECGGGCSS
T ss_pred EEEEEEECCCCCEEEEE--EEeCCcccEEeCC------CcEEECCCCEEEEEEEEEEChHHccC
Confidence 34567799888865432 2221111111111 13789999999999999999987754
No 61
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A*
Probab=20.76 E-value=1.5e+02 Score=28.08 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=45.7
Q ss_pred cEEEecCCCeeEEEEEEEcCCCCceEEEEeCcccccchhccccccccccccccccCCCCeEeccEEEEeCCCC
Q 023783 181 REVRVKPGESALAFYTAENRSSTPITGVSTYNVTPMKAAVYFNKIQCFCFEEQRLLPGEQIDMPVFFYIDPEF 253 (277)
Q Consensus 181 ~~v~V~PGE~~l~fY~a~N~sd~pi~GqAvynVtP~~Ag~YF~KieCFCF~eQ~L~pGE~vdMPV~F~IDPei 253 (277)
..+.+.||++..+.-.++|....++.|-.+-.-.|.....+- .-..|.|||...+++.+-++...
T Consensus 365 ~~~~~~~g~~~~~~~~vtn~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~t~~~~vt~~~~~ 429 (601)
T 1w8o_A 365 PDVALEPGQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQG--------SVEPLMPGRQAKGQVTITVPAGT 429 (601)
T ss_dssp CCEEECTTCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEE--------EECCBCTTCEEEEEEEEECCTTC
T ss_pred ccceecCCceeEEEEEEECCCceeccCceEEEecCCCcEEec--------cccccCCCCceEEEEEEecCCCC
Confidence 458899999999999999998877766222222343333332 12678899999999888887543
No 62
>2cir_A Hexose-6-phosphate mutarotase; hypothetical protein, isomerase; HET: BG6; 1.60A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A*
Probab=20.13 E-value=94 Score=27.14 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=28.1
Q ss_pred CCCCeEEEccccEEEecCCCeeEEEEEEEcCC-CCceEEE
Q 023783 170 DGMPWKFIPTQREVRVKPGESALAFYTAENRS-STPITGV 208 (277)
Q Consensus 170 ~~lPW~F~P~q~~v~V~PGE~~l~fY~a~N~s-d~pi~Gq 208 (277)
.+-|++|+-.. ..++.. ..-.+.|.|+|.+ |+++.-.
T Consensus 118 ~g~P~~~~~~v-ty~L~~-~~L~i~~~~~N~~~d~~~~~~ 155 (297)
T 2cir_A 118 KLWPMDYLLIL-TVELGS-DYLKTAIEVENTSSSKELKFN 155 (297)
T ss_dssp HHSCCCCEEEE-EEEECS-SEEEEEEEEECCCSSCCEEEE
T ss_pred hhCCCcEEEEE-EEEEcC-CEEEEEEEEEcCCCCcceEEe
Confidence 46799998764 344544 6789999999999 9987644
Done!