Query 023784
Match_columns 277
No_of_seqs 62 out of 64
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 12:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023784.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023784hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1psb_C NDR Ser/Thr kinase-like 9.8 1.1E+02 0.0037 18.1 1.1 16 42-62 8-23 (26)
2 4dx8_H KREV interaction trappe 8.9 2.1E+02 0.0073 25.3 3.0 27 241-267 82-108 (203)
3 1wkj_A Nucleoside diphosphate 8.1 83 0.0028 25.5 0.1 24 206-230 4-27 (137)
4 2hur_A NDK, nucleoside diphosp 7.8 88 0.003 25.5 0.1 25 206-231 5-29 (142)
5 1nhk_R Nucleoside diphosphate 7.5 92 0.0032 25.5 0.1 26 205-231 4-29 (144)
6 4hr2_A Nucleoside diphosphate 7.3 96 0.0033 25.6 0.1 25 205-230 9-33 (145)
7 2dxe_A Nucleoside diphosphate 7.0 1E+02 0.0035 25.7 0.1 25 205-230 9-33 (160)
8 3zwl_E Eukaryotic translation 6.8 89 0.0031 22.0 -0.3 9 56-64 14-22 (50)
9 3evo_A NDP kinase, NDK, nucleo 6.8 1E+02 0.0036 25.3 0.1 26 203-229 6-31 (146)
10 3llb_A Uncharacterized protein 6.6 1.7E+02 0.0057 21.1 1.1 17 215-231 13-29 (83)
No 1
>1psb_C NDR Ser/Thr kinase-like protein; helix-loop-helix, protein-peptide complex, metal binding protein; NMR {Bos taurus}
Probab=9.79 E-value=1.1e+02 Score=18.14 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.1
Q ss_pred CCCCChhhHHHHhHHhhhhhc
Q 023784 42 NMSKEPKDCRETYSQIKRRRM 62 (277)
Q Consensus 42 ~~~ke~d~~~E~s~~sKRRRm 62 (277)
...||++.+ +.||.+|
T Consensus 8 ~~~kEte~l-----Rl~R~Kl 23 (26)
T 1psb_C 8 HARKETEFL-----RLKRTRL 23 (26)
T ss_dssp SCCTTHHHH-----HHHHHHH
T ss_pred HHHHHHHHH-----HHhhccc
Confidence 357888866 8888876
No 2
>4dx8_H KREV interaction trapped protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens}
Probab=8.86 E-value=2.1e+02 Score=25.31 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCcceeeeeeeeCCCc
Q 023784 241 DPSAYPKSAFSGKPVVGKTKIRTEGGK 267 (277)
Q Consensus 241 ~p~~~~~~g~SGK~Vv~~tri~T~gg~ 267 (277)
.|.++..-|+.||.||...++.-+|++
T Consensus 82 kpiSp~nqG~~gKRVV~mKkf~ldg~~ 108 (203)
T 4dx8_H 82 KPISPANQGIRGKRVVLMKKFPLDGEK 108 (203)
T ss_dssp CCC---CCCCCCSCCEEEEEEECCSSC
T ss_pred ccCCCCCccccceeEEEeeecccccCC
Confidence 344456679999999999999998643
No 3
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=8.14 E-value=83 Score=25.48 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=17.0
Q ss_pred eeeeeccCCccCCcchHhHHhhhcC
Q 023784 206 PFAFIKPCGVHGDITLKDINQRIHS 230 (277)
Q Consensus 206 PF~~vKP~g~~gd~TL~DIN~ri~~ 230 (277)
=|.+|||+++.-.. +-+|-+||..
T Consensus 4 Tl~iIKPdav~~~~-~g~Ii~~ie~ 27 (137)
T 1wkj_A 4 TFVMIKPDGVRRGL-VGEILARFER 27 (137)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred EEEEEChHHhhccc-HHHHHHHHHH
Confidence 38899999986543 4667666653
No 4
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=7.79 E-value=88 Score=25.53 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=18.1
Q ss_pred eeeeeccCCccCCcchHhHHhhhcCC
Q 023784 206 PFAFIKPCGVHGDITLKDINQRIHSP 231 (277)
Q Consensus 206 PF~~vKP~g~~gd~TL~DIN~ri~~~ 231 (277)
=|.+|||+++.-.. +-+|-+||...
T Consensus 5 Tl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (142)
T 2hur_A 5 TFSIIKPNAVAKNV-IGNIFARFEAA 29 (142)
T ss_dssp EEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEChHHHhccc-HHHHHHHHHHC
Confidence 48999999986554 45777777544
No 5
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=7.49 E-value=92 Score=25.51 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=18.5
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcCC
Q 023784 205 YPFAFIKPCGVHGDITLKDINQRIHSP 231 (277)
Q Consensus 205 yPF~~vKP~g~~gd~TL~DIN~ri~~~ 231 (277)
.=|.+|||+++.-.. +-+|-+||...
T Consensus 4 rTl~iIKPdav~~~~-~g~Ii~~ie~~ 29 (144)
T 1nhk_R 4 RTLSIIKPDGLEKGV-IGKIISRFEEK 29 (144)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHHT
T ss_pred EEEEEEChHHHhccc-HHHHHHHHHHC
Confidence 348999999986554 45777777544
No 6
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=7.25 E-value=96 Score=25.61 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=17.4
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 023784 205 YPFAFIKPCGVHGDITLKDINQRIHS 230 (277)
Q Consensus 205 yPF~~vKP~g~~gd~TL~DIN~ri~~ 230 (277)
.=|++|||.++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~g~Ii~rie~ 33 (145)
T 4hr2_A 9 RTLSIIKPDAVAKNV-IGQIYSRFEN 33 (145)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred HeEEEEChHHhhcCC-HHHHHHHHHH
Confidence 458999999876543 4567777643
No 7
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=6.95 E-value=1e+02 Score=25.73 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=17.8
Q ss_pred eeeeeeccCCccCCcchHhHHhhhcC
Q 023784 205 YPFAFIKPCGVHGDITLKDINQRIHS 230 (277)
Q Consensus 205 yPF~~vKP~g~~gd~TL~DIN~ri~~ 230 (277)
.=|.+|||+++.-.. +-+|-+||..
T Consensus 9 rTl~iIKPDav~~~l-~G~Ii~rie~ 33 (160)
T 2dxe_A 9 RTLVIIKPDAVVRGL-IGEIISRFEK 33 (160)
T ss_dssp EEEEEECHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEEChHHhhccc-HHHHHHHHHH
Confidence 458999999986553 4667677653
No 8
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=6.84 E-value=89 Score=21.98 Aligned_cols=9 Identities=22% Similarity=0.608 Sum_probs=6.8
Q ss_pred Hhhhhhccc
Q 023784 56 QIKRRRMLQ 64 (277)
Q Consensus 56 ~sKRRRmLq 64 (277)
..+|||||.
T Consensus 14 Ie~RRrlLe 22 (50)
T 3zwl_E 14 ILHQRELLK 22 (50)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 358899885
No 9
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=6.78 E-value=1e+02 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=18.1
Q ss_pred eeeeeeeeccCCccCCcchHhHHhhhc
Q 023784 203 VAYPFAFIKPCGVHGDITLKDINQRIH 229 (277)
Q Consensus 203 vayPF~~vKP~g~~gd~TL~DIN~ri~ 229 (277)
+=.=|++|||.++.... +-+|=+||.
T Consensus 6 ~e~Tl~iIKPdav~~~~-~g~Ii~~ie 31 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSL-VAEIMGRIE 31 (146)
T ss_dssp CEEEEEEECHHHHHTTC-HHHHHHHHH
T ss_pred ceeEEEEEChHHHhccc-HHHHHHHHH
Confidence 44568999999987553 456666664
No 10
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=6.64 E-value=1.7e+02 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=14.8
Q ss_pred ccCCcchHhHHhhhcCC
Q 023784 215 VHGDITLKDINQRIHSP 231 (277)
Q Consensus 215 ~~gd~TL~DIN~ri~~~ 231 (277)
+.|.+.|.|+|+.+-..
T Consensus 13 v~G~~~l~dl~~~l~~~ 29 (83)
T 3llb_A 13 VKALTPVDAFNDFFGSE 29 (83)
T ss_dssp EETTCBHHHHHHHHCCC
T ss_pred EEccCCHHHHHHHhCCC
Confidence 67999999999998764
Done!