BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023785
(277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 96 LKVH-MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHA 154
LKV M C C + + K + ++ GVE E L+ + V+G DP LV V + K
Sbjct: 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAE 63
Query: 155 VI 156
V+
Sbjct: 64 VL 65
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHR 54
M C C V + LK GVE V + + +V+G ADP ++ V+ + ++
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVEEEGYK 61
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 91 VIIVVLKVH-MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 139
V+ + L++ MHC+ C L I++ I ++ GV+S + L+N VK +DP
Sbjct: 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVK--YDP 66
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 98 VHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 156
+ MHCE C +IK + + G+ S D++ ++V+ P +++ + + GK A+I
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL-RNCGKDAII 70
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITD 26
MHCE C ++ CLK G+ + D
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFD 40
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 30.8 bits (68), Expect = 0.82, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPD--LKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIV 157
M C C+ I++ I ++ GV+S + + L+ + V+ G P L D V +R G HA ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV-ERAGYHARVL 70
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 30.8 bits (68), Expect = 0.90, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPD--LKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIV 157
M C C+ I++ I ++ GV+S + + L+ + V+ G P L D V +R G HA ++
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV-ERAGYHARVL 69
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 30.8 bits (68), Expect = 0.94, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPD--LKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIV 157
M C C+ I++ I ++ GV+S + + L+ + V+ G P L D V +R G HA ++
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV-ERAGYHARVL 70
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 96 LKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAV 155
V M C+ C ++K + + GV+ E L++ V V P + V + + TG+ AV
Sbjct: 23 FAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTL-PSQEVQALLEGTGRQAV 81
Query: 156 I 156
+
Sbjct: 82 L 82
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDV 23
M C+ C VR+ L+G GV+DV
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDV 49
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKA 39
+ C CA K R +K EGV + I + K+ V GE +
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS 50
>pdb|1FLC|A Chain A, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|C Chain C, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
pdb|1FLC|E Chain E, X-Ray Structure Of The Haemagglutinin-Esterase-Fusion
Glycoprotein Of Influenza C Virus
Length = 432
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 136 VFDPPKLVDYVYKRTGKHAVI 156
+F PP VDY+Y+ GKH V
Sbjct: 92 MFGPPGKVDYLYQGCGKHKVF 112
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 28.9 bits (63), Expect = 3.4, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSH 53
M C CARKV ++ GV V T K++V + +V +Q+ +
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 101 HCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 156
HCE C +IK + + G+ S D++ +V+ P +++ + + GK A+I
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTL-RNCGKDAII 69
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 94 VVLKVH---MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 139
VVLK+ M C C+ I+ +I +++GV+ + L N + T+ V+ P
Sbjct: 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI--VYQP 55
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 27.7 bits (60), Expect = 6.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPK 141
M C C + +KK I ++EGV + + Q V FD K
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVV--TFDDAK 51
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 94 VVLKVH---MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 139
VVLK+ M C C+ I+ +I +++GV+ + L N + T+ V+ P
Sbjct: 3 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATI--VYQP 49
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVD 144
M C C L+I+ + R++GV A + ++TV +DP ++ +
Sbjct: 17 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTV--TYDPKQVSE 59
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVD 144
M C C L+I+ + R++GV A + ++TV +DP ++ +
Sbjct: 12 MDCTSCKLKIEGSLERLKGVAEASVTVATGRLTV--TYDPKQVSE 54
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 139
M C C+ I+KR+ ++EGV +A + VTV+ ++P
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE--YNP 120
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 100 MHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDP 139
M C C+ I+KR+ ++EGV +A + VTV+ ++P
Sbjct: 83 MTCAACANRIEKRLNKIEGVANAPVNFALETVTVE--YNP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,028,312
Number of Sequences: 62578
Number of extensions: 134879
Number of successful extensions: 422
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 43
length of query: 277
length of database: 14,973,337
effective HSP length: 98
effective length of query: 179
effective length of database: 8,840,693
effective search space: 1582484047
effective search space used: 1582484047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)