BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023785
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
M CEGC RKVRR ++G +GV V + K HKV V G DP KV+ R+ ++ ++VEL
Sbjct: 34 MDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGY-VDPNKVVARMSHRTGKKVELWP 92
Query: 61 PIPKPTAAEEEKKA--EEKAPPKPEEKKEEPQV 91
+P A ++KAP + ++P V
Sbjct: 93 YVPYDVVAHPYAAGVYDKKAPSGYVRRVDDPGV 125
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 86 KEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDY 145
K+ Q+ V +KV M CEGC ++++ + M+GV S + K +VTV G DP K+V
Sbjct: 20 KKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVAR 79
Query: 146 VYKRTGK 152
+ RTGK
Sbjct: 80 MSHRTGK 86
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=CCS1 PE=3 SV=1
Length = 238
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 98 VHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 156
V MHC C+ EI + + + GV+ PDL+ V V+G+ PP + TG+ A++
Sbjct: 14 VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGI-APPSSIVQALAATGRDAIL 71
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
MHC C ++ R L+ GV++V D + V V+G A P ++ + + S
Sbjct: 16 MHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRG-IAPPSSIVQALAATGRDAILRGS 74
Query: 61 PIPKPTAAEEEKKAEEKAPP 80
P A + A PP
Sbjct: 75 GEPDSAAVAILESASAGGPP 94
>sp|Q9KPZ7|COPA_VIBCH Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=copA PE=3
SV=1
Length = 915
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%)
Query: 63 PKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESA 122
P + E+E + E E + +L M C C ++K +L +EGV+SA
Sbjct: 144 PAASIDEKETDTPDAENSSNTEATEASSQTLSLLIKGMTCASCVASVEKALLSVEGVQSA 203
Query: 123 EPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIV 157
+ +L V+G+F P+ + + +G A I+
Sbjct: 204 QVNLTEQSALVRGIFANPQPLLNAIQSSGYQAEIL 238
Score = 33.1 bits (74), Expect = 2.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELL 59
M C C V + L EGV+ + +V+G A+P +L+ +Q + Q E+L
Sbjct: 181 MTCASCVASVEKALLSVEGVQSAQVNLTEQSALVRGIFANPQPLLNAIQSSGY-QAEIL 238
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 94 VVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKH 153
+V V M C+ C + + + G+ + DLK++ VT +G P ++V + + TGK
Sbjct: 7 IVFAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAI-QSTGKD 65
Query: 154 AVI 156
A+I
Sbjct: 66 AII 68
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQR 50
MHCE C +++CLK G+++V D K + + V+G A P +++ ++
Sbjct: 17 MHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAA-PSAIINALKN 65
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 98 VHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 156
V MHCE C+ +I+K + + G+++ D+K++ + V+G P +++ + K G+ +I
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINAL-KNCGRDGII 72
>sp|P70705|ATP7A_RAT Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1
SV=1
Length = 1492
Score = 34.3 bits (77), Expect = 0.98, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
MHC+ C + L + V ++ + IVK + V + RK+ +E +S
Sbjct: 286 MHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNAS---LVTPEILRKA---IEAVS 339
Query: 61 P------IPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVH-MHCEGCSLEIKKRI 113
P I + + P +P VV+ ++ M C C I+ I
Sbjct: 340 PGQYRVSISSEVESPTSSPSSSSLQKMPLNLVSQPLTQEVVININGMTCNSCVQSIEGVI 399
Query: 114 LRMEGVESAEPDLKNSQVTVKGVFDP 139
+ GV+S L NS T++ +DP
Sbjct: 400 SKKPGVKSIHVSLTNSTGTIE--YDP 423
Score = 31.6 bits (70), Expect = 6.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 56 VELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVH---MHCEGCSLEIKKR 112
VEL+ + +E+K E+ PQ V+LK+ M C C+ I+ +
Sbjct: 140 VELVPDLSLDMGTQEKKSGTS-------EEHSTPQAGEVLLKMRVEGMTCHSCTSTIEGK 192
Query: 113 ILRMEGVESAEPDLKNSQVTVKGVFDP 139
+ +++GV+ + L N + T+ V+ P
Sbjct: 193 VGKLQGVQRIKVSLDNQEATI--VYQP 217
>sp|Q64430|ATP7A_MOUSE Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=3
Length = 1491
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 15/146 (10%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
MHC+ C + L + V ++ + IVK + V + RK+ +E +S
Sbjct: 286 MHCKSCVSNIESALSTLQYVSSIVVSLENRSAIVKYNAS---LVTPEMLRKA---IEAIS 339
Query: 61 P------IPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVH-MHCEGCSLEIKKRI 113
P I + + P +P V+ ++ M C C I+ I
Sbjct: 340 PGQYRVSIASEVESTASSPSSSSLQKMPLNIVSQPLTQEAVININGMTCNSCVQSIEGVI 399
Query: 114 LRMEGVESAEPDLKNSQVTVKGVFDP 139
+ GV+S L NS T++ FDP
Sbjct: 400 SKKPGVKSIHVSLANSTGTIE--FDP 423
Score = 33.1 bits (74), Expect = 2.5, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 56 VELLSPIPKPTAAEEEKKA--EEKAPPKPEEKKEEPQVIIVVLKVH-MHCEGCSLEIKKR 112
VEL+ + +E+K EE + P+ E +++ +KV M C C+ I+ +
Sbjct: 140 VELVPDLSLDMGTQEKKSGACEEHSTPQAGE-------VMLKMKVEGMTCHSCTSTIEGK 192
Query: 113 ILRMEGVESAEPDLKNSQVTVKGVFDP 139
+ +++GV+ + L N + T+ VF P
Sbjct: 193 VGKLQGVQRIKVSLDNQEATI--VFQP 217
>sp|Q9PVE4|THB_DANRE Thyroid hormone receptor beta OS=Danio rerio GN=thrb PE=1 SV=2
Length = 395
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 1 MHCEGCARKVRRCLKG---------FEG--VEDVIT-----DCKTHKVIVKGEKADPLKV 44
+ CEGC RR ++ +EG V D +T +C+ K I G D V
Sbjct: 47 ITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATD--LV 104
Query: 45 LDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHM--HC 102
LD +R + R++ I + ++ ++ +PE +EE ++I VV + HM +
Sbjct: 105 LDDSKRLAKRKL-----IEENRERRRREELQKTVWDRPEPTQEEWEMIRVVTEAHMATNA 159
Query: 103 EGCSLEIKKRILRMEGVESAEPD 125
+G + K++ L GV+ A+P+
Sbjct: 160 QGNHWKQKRKFLSAVGVKEAKPE 182
>sp|Q64ZR4|IF2_BACFR Translation initiation factor IF-2 OS=Bacteroides fragilis (strain
YCH46) GN=infB PE=3 SV=1
Length = 1015
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 45 LDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQV 91
LD++ RK ++ P P+P AAEE+K AEE P E KKEE V
Sbjct: 116 LDKLNRKVEKEPVKEEPKPQPVAAEEKKVAEEVKPVVNEVKKEEVTV 162
>sp|Q5LIN1|IF2_BACFN Translation initiation factor IF-2 OS=Bacteroides fragilis (strain
ATCC 25285 / NCTC 9343) GN=infB PE=3 SV=1
Length = 1015
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 45 LDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQV 91
LD++ RK ++ P P+P AAEE+K AEE P E KKEE V
Sbjct: 116 LDKLNRKVEKEPVKEEPKPQPVAAEEKKVAEEVKPVVNEVKKEEVTV 162
>sp|Q04656|ATP7A_HUMAN Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3
Length = 1500
Score = 32.3 bits (72), Expect = 4.1, Method: Composition-based stats.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 15/146 (10%)
Query: 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLS 60
MHC+ C + L + V ++ + IVK + V RK+ +E +S
Sbjct: 286 MHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVKYNAS---SVTPESLRKA---IEAVS 339
Query: 61 P------IPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVH-MHCEGCSLEIKKRI 113
P I + + P +P V+ + M C C I+ I
Sbjct: 340 PGLYRVSITSEVESTSNSPSSSSLQKIPLNVVSQPLTQETVINIDGMTCNSCVQSIEGVI 399
Query: 114 LRMEGVESAEPDLKNSQVTVKGVFDP 139
+ GV+S L NS TV+ +DP
Sbjct: 400 SKKPGVKSIRVSLANSNGTVE--YDP 423
>sp|P22290|PVDR_PLAVS Duffy receptor OS=Plasmodium vivax (strain Salvador I) GN=PVDR PE=1
SV=2
Length = 1070
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%)
Query: 156 IVKQEPEKKEEKCGGGDGGGGDGAANKEEKKGGGGGENKENKAAAGEQENQEKKEGDNKK 215
I K PE +++ G DGGG D +ANK+ G +EN A + + N
Sbjct: 735 INKGVPEDRDKTVGSKDGGGEDNSANKDAATVVGEDRIRENSAGGSTNDRSKNDTEKNGA 794
Query: 216 SNDDEAKAAAADATAATE 233
S D ++ A A + TE
Sbjct: 795 STPDSKQSEDATALSKTE 812
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.130 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,811,932
Number of Sequences: 539616
Number of extensions: 5617373
Number of successful extensions: 57355
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 776
Number of HSP's that attempted gapping in prelim test: 47569
Number of HSP's gapped (non-prelim): 7609
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)