Query 023785
Match_columns 277
No_of_seqs 303 out of 2315
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 99.3 2.7E-11 6E-16 121.7 12.3 134 1-161 3-141 (951)
2 PF00403 HMA: Heavy-metal-asso 99.3 2.5E-11 5.4E-16 85.2 7.5 58 95-153 1-62 (62)
3 KOG0207 Cation transport ATPas 99.2 6.6E-11 1.4E-15 119.0 12.6 132 1-158 78-215 (951)
4 PRK10671 copA copper exporting 99.2 1.8E-10 3.9E-15 119.1 14.2 150 1-156 12-163 (834)
5 COG2608 CopZ Copper chaperone 99.0 1.1E-09 2.5E-14 79.2 7.9 65 92-157 2-70 (71)
6 KOG1603 Copper chaperone [Inor 98.9 4.3E-09 9.4E-14 76.6 8.1 67 91-158 4-71 (73)
7 PF00403 HMA: Heavy-metal-asso 98.8 1.7E-08 3.7E-13 70.6 7.0 54 1-55 7-62 (62)
8 KOG4656 Copper chaperone for s 98.5 2.5E-07 5.5E-12 78.9 7.7 70 92-162 7-76 (247)
9 COG2608 CopZ Copper chaperone 98.5 2.9E-07 6.2E-12 66.6 6.6 56 1-57 11-68 (71)
10 KOG1603 Copper chaperone [Inor 98.2 2.8E-06 6.1E-11 61.7 5.9 56 1-57 13-68 (73)
11 PLN02957 copper, zinc superoxi 98.1 2.2E-05 4.8E-10 69.8 9.5 70 92-162 6-75 (238)
12 KOG4656 Copper chaperone for s 97.9 2E-05 4.2E-10 67.5 5.9 59 1-61 15-73 (247)
13 PRK10671 copA copper exporting 97.9 3.1E-05 6.7E-10 80.5 7.2 64 92-158 3-67 (834)
14 COG2217 ZntA Cation transport 97.7 7.3E-05 1.6E-09 76.0 6.9 62 93-156 3-69 (713)
15 TIGR00003 copper ion binding p 97.4 0.00099 2.2E-08 43.9 7.7 61 93-154 3-67 (68)
16 PLN02957 copper, zinc superoxi 96.8 0.0042 9.2E-08 55.2 7.4 59 1-61 14-72 (238)
17 COG2217 ZntA Cation transport 96.3 0.0069 1.5E-07 61.8 6.2 56 1-58 11-69 (713)
18 PRK11033 zntA zinc/cadmium/mer 95.7 0.025 5.5E-07 58.3 7.0 64 91-155 52-117 (741)
19 TIGR00003 copper ion binding p 94.1 0.28 6E-06 31.6 6.5 54 1-55 11-66 (68)
20 PRK11033 zntA zinc/cadmium/mer 89.9 0.74 1.6E-05 47.6 6.6 56 1-57 62-117 (741)
21 TIGR02052 MerP mercuric transp 89.1 4.2 9E-05 28.8 8.4 63 93-156 24-90 (92)
22 PRK13748 putative mercuric red 80.7 7.1 0.00015 38.7 8.1 64 95-159 3-69 (561)
23 cd00371 HMA Heavy-metal-associ 79.9 9.3 0.0002 22.0 6.5 49 98-146 4-55 (63)
24 COG1888 Uncharacterized protei 65.4 49 0.0011 25.0 7.2 67 91-158 5-80 (97)
25 PF01206 TusA: Sulfurtransfera 64.6 27 0.00059 24.2 5.8 53 95-157 2-57 (70)
26 PF01883 DUF59: Domain of unkn 58.4 17 0.00037 25.5 3.8 32 93-124 35-72 (72)
27 PF02680 DUF211: Uncharacteriz 47.0 62 0.0013 24.6 5.3 65 91-157 4-77 (95)
28 COG0841 AcrB Cation/multidrug 44.1 3.3E+02 0.0071 29.6 12.1 123 6-147 62-207 (1009)
29 COG2177 FtsX Cell division pro 40.1 1.4E+02 0.003 27.5 7.6 82 4-126 71-153 (297)
30 TIGR03406 FeS_long_SufT probab 39.9 72 0.0016 27.0 5.3 54 93-151 114-173 (174)
31 TIGR02052 MerP mercuric transp 39.5 69 0.0015 22.2 4.6 35 1-35 32-66 (92)
32 cd03421 SirA_like_N SirA_like_ 38.4 1.3E+02 0.0027 20.6 5.6 51 96-157 2-55 (67)
33 PF14437 MafB19-deam: MafB19-l 37.3 74 0.0016 26.2 4.8 41 92-133 100-142 (146)
34 TIGR02945 SUF_assoc FeS assemb 34.3 1.1E+02 0.0023 22.9 5.0 35 93-127 40-78 (99)
35 PF08248 Tryp_FSAP: Tryptophyl 30.4 32 0.00069 15.9 0.9 8 248-255 4-11 (12)
36 PRK11018 hypothetical protein; 30.1 2.1E+02 0.0045 20.5 6.7 55 93-157 8-65 (78)
37 PRK13748 putative mercuric red 29.8 1.7E+02 0.0038 28.8 7.1 57 1-58 9-66 (561)
38 PRK14054 methionine sulfoxide 29.7 1.1E+02 0.0024 25.9 4.8 27 104-130 11-37 (172)
39 PF05663 DUF809: Protein of un 29.7 1.2E+02 0.0025 23.3 4.4 44 102-146 46-89 (138)
40 PRK11152 ilvM acetolactate syn 27.2 2.4E+02 0.0053 20.3 6.1 59 41-124 17-75 (76)
41 cd04888 ACT_PheB-BS C-terminal 26.3 1.6E+02 0.0035 20.0 4.6 33 92-124 41-74 (76)
42 PRK10553 assembly protein for 25.3 2.1E+02 0.0046 21.2 5.2 44 103-146 16-60 (87)
43 KOG4661 Hsp27-ERE-TATA-binding 25.2 2.5E+02 0.0055 28.4 6.9 69 95-164 407-484 (940)
44 PF08777 RRM_3: RNA binding mo 24.8 2.7E+02 0.0057 21.3 5.8 54 94-147 2-58 (105)
45 PF13732 DUF4162: Domain of un 23.7 2.7E+02 0.0058 19.6 5.6 44 113-158 26-70 (84)
46 PF03927 NapD: NapD protein; 21.6 3E+02 0.0065 19.9 5.3 42 104-146 15-57 (79)
47 COG2177 FtsX Cell division pro 20.4 3.4E+02 0.0073 25.0 6.5 48 93-153 62-109 (297)
48 PRK14054 methionine sulfoxide 20.2 1.9E+02 0.004 24.5 4.4 28 4-31 10-37 (172)
49 cd02410 archeal_CPSF_KH The ar 20.1 3.3E+02 0.0073 22.4 5.7 58 105-162 54-117 (145)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.28 E-value=2.7e-11 Score=121.68 Aligned_cols=134 Identities=22% Similarity=0.362 Sum_probs=116.3
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC-CChHHHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCCC
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK-ADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAP 79 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~-~~~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~~ 79 (277)
|+|..|++.|+.+++..+|+.++.+++.+++.+|..+. ++++.+.++|++ +||.+.+++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc----------------
Confidence 89999999999999999999999999999999887543 489999999997 599997764422
Q ss_pred CCCCcCCCCCceEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcEE
Q 023785 80 PKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAV 155 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a~ 155 (277)
....+..|+| ||+|.+|++.|++.|+++.||.++.+.+......|.+ .++++.+.+.+. ++||.+.
T Consensus 66 ---------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~ 135 (951)
T KOG0207|consen 66 ---------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAE 135 (951)
T ss_pred ---------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccce
Confidence 2233778999 9999999999999999999999999999999999874 478999999995 9999998
Q ss_pred EecCCC
Q 023785 156 IVKQEP 161 (277)
Q Consensus 156 ~v~~~~ 161 (277)
++....
T Consensus 136 ~i~~~~ 141 (951)
T KOG0207|consen 136 LIESVN 141 (951)
T ss_pred ehhccc
Confidence 776544
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.25 E-value=2.5e-11 Score=85.17 Aligned_cols=58 Identities=31% Similarity=0.555 Sum_probs=53.0
Q ss_pred EEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccC---CChHHHHHHHHHhcCCc
Q 023785 95 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FDPPKLVDYVYKRTGKH 153 (277)
Q Consensus 95 ~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~---~~~~~l~~~l~k~~G~~ 153 (277)
+|+| ||+|++|+++|+++|.+++||.++.+|+.+++++|.+. ++++.|.+.|+ ++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5889 99999999999999999999999999999999999864 45699999995 89984
No 3
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.24 E-value=6.6e-11 Score=118.97 Aligned_cols=132 Identities=23% Similarity=0.390 Sum_probs=113.6
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC--CChHHHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCC
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKA 78 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~--~~~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~ 78 (277)
|+|.+|++.|++.|+++.||.++.+.+...+..+..+. +++..+.+.+++ +||.+.++.....
T Consensus 78 mtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~~~~-------------- 142 (951)
T KOG0207|consen 78 MTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIESVNG-------------- 142 (951)
T ss_pred ceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhcccC--------------
Confidence 89999999999999999999999999999999987543 478899999996 6998876533211
Q ss_pred CCCCCcCCCCCceEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcE
Q 023785 79 PPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHA 154 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a 154 (277)
.....+.|.| ||+|.+|+.+|++.|.+++||.++.+++.++++.|.+ .+.++++++.| +.+|+.+
T Consensus 143 ----------~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~i-e~~~~~~ 211 (951)
T KOG0207|consen 143 ----------NSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAI-EETGFEA 211 (951)
T ss_pred ----------CCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHH-Hhhcccc
Confidence 1115789999 9999999999999999999999999999999999974 47899999999 6899987
Q ss_pred EEec
Q 023785 155 VIVK 158 (277)
Q Consensus 155 ~~v~ 158 (277)
.+..
T Consensus 212 ~~~~ 215 (951)
T KOG0207|consen 212 SVRP 215 (951)
T ss_pred eeee
Confidence 6654
No 4
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.20 E-value=1.8e-10 Score=119.08 Aligned_cols=150 Identities=19% Similarity=0.306 Sum_probs=105.2
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCcccccCCCCCCCchhHHH-hhhcCCC
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEK-KAEEKAP 79 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~-~~~~~~~ 79 (277)
|+|++|+.+|+++|.+++||.++.+++. +.+|.... +...+...|++ +||.+...++...+....... +......
T Consensus 12 mtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~-~~~~i~~~i~~-~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (834)
T PRK10671 12 LSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTA-SAEALIETIKQ-AGYDASVSHPKAKPLTESSIPSEALTAAS 87 (834)
T ss_pred cccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecC-CHHHHHHHHHh-cCCcccccccccccccccccCchhhhhhh
Confidence 8999999999999999999999999994 45555545 78899999997 599987654211100000000 0000000
Q ss_pred CCCCcCCCCCceEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCcEEE
Q 023785 80 PKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVI 156 (277)
Q Consensus 80 ~~~~~~~~~~~~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~a~~ 156 (277)
...... ......++.|.| ||+|.+|+..|++.+..++||.++.+++.++++.|.+..+...+...+. .+||.+.+
T Consensus 88 ~~~~~~-~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a~~ 163 (834)
T PRK10671 88 EELPAA-TADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGAEA 163 (834)
T ss_pred hhcccc-ccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCccc
Confidence 000000 000123567889 9999999999999999999999999999999888876667888888884 79997643
No 5
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.1e-09 Score=79.21 Aligned_cols=65 Identities=25% Similarity=0.452 Sum_probs=57.2
Q ss_pred EEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEc--c-CCChHHHHHHHHHhcCCcEEEe
Q 023785 92 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--G-VFDPPKLVDYVYKRTGKHAVIV 157 (277)
Q Consensus 92 ~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~--~-~~~~~~l~~~l~k~~G~~a~~v 157 (277)
+...|+| ||+|.+|+..|+++|..+.||.++.+++..+.+.|. + .++.+.|+++| ..+||.+..+
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai-~~aGy~~~~~ 70 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAI-EDAGYKVEEI 70 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHH-HHcCCCeeec
Confidence 4678999 999999999999999999999999999999666665 4 58999999999 5899987653
No 6
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.95 E-value=4.3e-09 Score=76.57 Aligned_cols=67 Identities=48% Similarity=0.800 Sum_probs=60.3
Q ss_pred eEEEEEeecccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcC-CcEEEec
Q 023785 91 VIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTG-KHAVIVK 158 (277)
Q Consensus 91 ~~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G-~~a~~v~ 158 (277)
.+..++.+.|||.+|..+|.+.|..+.||.++.+|...++++|.|.+++..|+..|+ +.| ..+.+|.
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~-k~~~k~~~~~~ 71 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLK-KTGGKRAELWK 71 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHH-hcCCCceEEec
Confidence 346788889999999999999999999999999999999999999999999999996 566 7776664
No 7
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.81 E-value=1.7e-08 Score=70.61 Aligned_cols=54 Identities=31% Similarity=0.593 Sum_probs=48.5
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC--CChHHHHHHHhhccCCc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 55 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~--~~~~~i~~~I~~~~G~~ 55 (277)
|+|.+|+++|+++|.+++||.++.+|+.+++++|.+.. +++.+|.++|++ +||.
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy~ 62 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGYE 62 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTSE
T ss_pred cccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCcC
Confidence 89999999999999999999999999999999998654 356999999997 5984
No 8
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.55 E-value=2.5e-07 Score=78.86 Aligned_cols=70 Identities=26% Similarity=0.442 Sum_probs=64.2
Q ss_pred EEEEEeecccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCcEEEecCCCC
Q 023785 92 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 162 (277)
Q Consensus 92 ~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~a~~v~~~~~ 162 (277)
-.++|.|.|+|.+|++.|+..|..++||.+++||+..+.|.|.+...+..|.+.| +.+|.+|.+.....+
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~l-e~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTL-ENTGRDAVLRGAGKP 76 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHH-HhhChheEEecCCch
Confidence 3678999999999999999999999999999999999999999999999999999 489999988776553
No 9
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.53 E-value=2.9e-07 Score=66.62 Aligned_cols=56 Identities=25% Similarity=0.481 Sum_probs=48.4
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEe--ccCCChHHHHHHHhhccCCccc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK--GEKADPLKVLDRVQRKSHRQVE 57 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~--~~~~~~~~i~~~I~~~~G~~a~ 57 (277)
|+|.+|+.+|+++|..++||.++.+++..+++.|. +..++..+|..+|.. +||.+.
T Consensus 11 MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~ 68 (71)
T COG2608 11 MTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVE 68 (71)
T ss_pred cCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCee
Confidence 89999999999999999999999999999776665 322488999999997 499764
No 10
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.23 E-value=2.8e-06 Score=61.68 Aligned_cols=56 Identities=50% Similarity=0.899 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCccc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 57 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a~ 57 (277)
|+|.+|...|++.|..+.||.++.+++..++++|.+.. ++..|+..|.+..+....
T Consensus 13 ~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~-~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 13 MHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNV-DPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred cccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEec-CHHHHHHHHHhcCCCceE
Confidence 89999999999999999999999999999999999887 999999999874224443
No 11
>PLN02957 copper, zinc superoxide dismutase
Probab=98.08 E-value=2.2e-05 Score=69.82 Aligned_cols=70 Identities=30% Similarity=0.536 Sum_probs=62.3
Q ss_pred EEEEEeecccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCcEEEecCCCC
Q 023785 92 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 162 (277)
Q Consensus 92 ~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~a~~v~~~~~ 162 (277)
+.+.|.++|+|.+|+.+|++.|..++||.++.+++..++++|.+......|+..| +++||.+.++....+
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aI-e~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAAL-EQTGRKARLIGQGDP 75 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHH-HHcCCcEEEecCCCc
Confidence 4567778999999999999999999999999999999999998777888899999 489999988877654
No 12
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.93 E-value=2e-05 Score=67.49 Aligned_cols=59 Identities=29% Similarity=0.566 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCcccccCC
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSP 61 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a~~~s~ 61 (277)
|+|.+|+..|+..|..++||.+|.+++..+.|.|.+.. .+..|.+.|+. ||.++.+..-
T Consensus 15 M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~-p~s~i~~~le~-tGr~Avl~G~ 73 (247)
T KOG4656|consen 15 MTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSV-PPSEIQNTLEN-TGRDAVLRGA 73 (247)
T ss_pred chhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccC-ChHHHHHHHHh-hChheEEecC
Confidence 89999999999999999999999999999999999887 88999999985 7998876543
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.85 E-value=3.1e-05 Score=80.49 Aligned_cols=64 Identities=20% Similarity=0.415 Sum_probs=56.9
Q ss_pred EEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCcEEEec
Q 023785 92 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVK 158 (277)
Q Consensus 92 ~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~a~~v~ 158 (277)
++++|.| ||+|.+|+.+|+++|.+++||.++.+++ ++.+|.+..+.+.|...+ +++||.+.+..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i-~~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETI-KQAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHH-HhcCCcccccc
Confidence 5789999 9999999999999999999999999999 456666667889999999 58999998764
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.70 E-value=7.3e-05 Score=75.95 Aligned_cols=62 Identities=31% Similarity=0.491 Sum_probs=55.2
Q ss_pred EEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccC---CC-hHHHHHHHHHhcCCcEEE
Q 023785 93 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FD-PPKLVDYVYKRTGKHAVI 156 (277)
Q Consensus 93 ~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~---~~-~~~l~~~l~k~~G~~a~~ 156 (277)
+..|.| ||+|.+|+.+|+ +|.+++||..+.+|+.++++.|... .+ .+.+...+ +..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v-~~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAV-EKAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHH-HhcCccccc
Confidence 578999 999999999999 9999999999999999999999743 44 68899999 489998866
No 15
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.45 E-value=0.00099 Score=43.89 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=50.3
Q ss_pred EEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcE
Q 023785 93 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHA 154 (277)
Q Consensus 93 ~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a 154 (277)
+..+.| ||+|.+|...++..+..+.++..+.+++....+.|.. ..+...+...+ ...||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAI-LDAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHH-HHcCCCc
Confidence 467899 9999999999999999999999999999999888874 24666776777 3677743
No 16
>PLN02957 copper, zinc superoxide dismutase
Probab=96.82 E-value=0.0042 Score=55.23 Aligned_cols=59 Identities=29% Similarity=0.497 Sum_probs=51.5
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCcccccCC
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSP 61 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a~~~s~ 61 (277)
|+|.+|+..|+..|..++||..+.+++..+++.|.... ....++..|++ +||.+.+++.
T Consensus 14 MsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~-~~~~I~~aIe~-~Gy~a~~~~~ 72 (238)
T PLN02957 14 MKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS-PVKAMTAALEQ-TGRKARLIGQ 72 (238)
T ss_pred ccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC-CHHHHHHHHHH-cCCcEEEecC
Confidence 78999999999999999999999999999999998655 77888888886 5998876643
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0069 Score=61.84 Aligned_cols=56 Identities=25% Similarity=0.518 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC--CC-hHHHHHHHhhccCCcccc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--AD-PLKVLDRVQRKSHRQVEL 58 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~--~~-~~~i~~~I~~~~G~~a~~ 58 (277)
|+|++|+++|+ +|++++||.++.+|+.++++.|..+. .+ ...+...++. .||.+..
T Consensus 11 m~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~~~ 69 (713)
T COG2217 11 MTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSARL 69 (713)
T ss_pred cCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCccccc
Confidence 89999999999 99999999999999999999987542 24 6788888886 5997653
No 18
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.71 E-value=0.025 Score=58.29 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=51.6
Q ss_pred eEEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCC-ChHHHHHHHHHhcCCcEE
Q 023785 91 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVF-DPPKLVDYVYKRTGKHAV 155 (277)
Q Consensus 91 ~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~-~~~~l~~~l~k~~G~~a~ 155 (277)
.+++.+.| ||+|.+|+..|++.+..++||.++.+++.+.++.|.... ....+...+ ..+||.+.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI-~~~Gy~a~ 117 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAV-QKAGFSLR 117 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHH-Hhcccccc
Confidence 34677889 999999999999999999999999999999988876321 125667777 47888663
No 19
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=94.12 E-value=0.28 Score=31.60 Aligned_cols=54 Identities=20% Similarity=0.388 Sum_probs=40.8
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC--CChHHHHHHHhhccCCc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 55 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~--~~~~~i~~~I~~~~G~~ 55 (277)
|+|..|+..++..+...+++..+.+++....+.+.... .....+...+.. .||.
T Consensus 11 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 66 (68)
T TIGR00003 11 MTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILD-AGYE 66 (68)
T ss_pred eEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHH-cCCC
Confidence 57999999999999999999999999999988876422 144555555553 3664
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=89.94 E-value=0.74 Score=47.59 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=44.2
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCccc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 57 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a~ 57 (277)
|+|.+|+..++..+..++||.++.+++.++++.+.........+...++. +||.+.
T Consensus 62 m~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~-~Gy~a~ 117 (741)
T PRK11033 62 MDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQK-AGFSLR 117 (741)
T ss_pred CCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHh-cccccc
Confidence 79999999999999999999999999999998876432112555566765 588764
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=89.12 E-value=4.2 Score=28.80 Aligned_cols=63 Identities=22% Similarity=0.395 Sum_probs=46.5
Q ss_pred EEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc---CCChHHHHHHHHHhcCCcEEE
Q 023785 93 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAVI 156 (277)
Q Consensus 93 ~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~---~~~~~~l~~~l~k~~G~~a~~ 156 (277)
.+.+.+ ++.|..|...+...+....++....+++....+.+.. ......+...+ ...|+.+++
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~ 90 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEAT-TDAGYPSSL 90 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHH-HhcCCCeEe
Confidence 445778 9999999999999999999998888888777765542 24555555666 367776543
No 22
>PRK13748 putative mercuric reductase; Provisional
Probab=80.74 E-value=7.1 Score=38.66 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=49.4
Q ss_pred EEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEcc--CCChHHHHHHHHHhcCCcEEEecC
Q 023785 95 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVYKRTGKHAVIVKQ 159 (277)
Q Consensus 95 ~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~--~~~~~~l~~~l~k~~G~~a~~v~~ 159 (277)
.+.+ +|+|.+|...++..+..++++....+++....+.+.. ..+...+...+ ...|+.+.+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i-~~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAV-AGLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHH-HHcCCeeeccCc
Confidence 3567 9999999999999999999999999999888766653 24556666666 467877655554
No 23
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=79.86 E-value=9.3 Score=21.99 Aligned_cols=49 Identities=37% Similarity=0.647 Sum_probs=35.0
Q ss_pred e-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccC--CChHHHHHHH
Q 023785 98 V-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV--FDPPKLVDYV 146 (277)
Q Consensus 98 V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~--~~~~~l~~~l 146 (277)
+ ++.|..|...+...+....++....+++....+.+... .+...+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAI 55 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHH
Confidence 5 78899999999999888899887777776666555432 2444444444
No 24
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.43 E-value=49 Score=25.03 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=43.0
Q ss_pred eEEEEEee-cccCchhHHHHHHHhhccCCeeEEEee-----cCCCe--EEEcc-CCChHHHHHHHHHhcCCcEEEec
Q 023785 91 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPD-----LKNSQ--VTVKG-VFDPPKLVDYVYKRTGKHAVIVK 158 (277)
Q Consensus 91 ~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd-----~~~~~--vtV~~-~~~~~~l~~~l~k~~G~~a~~v~ 158 (277)
.+.++|.| --+-.--.-.+-+.|+++.||..|.+. ..+.. ++|.| .++.+.|...| +++|-.++-++
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~i-E~~Gg~IHSiD 80 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVI-EELGGAIHSID 80 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHH-HHcCCeeeehh
Confidence 34566766 333333345566778888888766653 33333 44455 68999999999 68987665544
No 25
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=64.64 E-value=27 Score=24.19 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=37.5
Q ss_pred EEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEc--cCCChHHHHHHHHHhcCCcEEEe
Q 023785 95 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 157 (277)
Q Consensus 95 ~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~--~~~~~~~l~~~l~k~~G~~a~~v 157 (277)
+|.+ |+.|+...-++.++|..++.- ..+.|. ......+|...+ +..||....+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~-~~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWC-EENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHH-HHHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHH-HHCCCEEEEE
Confidence 5778 999999999999999998433 233333 345567888888 5899875444
No 26
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=58.36 E-value=17 Score=25.48 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEeecccCchh------HHHHHHHhhccCCeeEEEe
Q 023785 93 IVVLKVHMHCEGC------SLEIKKRILRMEGVESAEP 124 (277)
Q Consensus 93 ~~~l~Vgm~C~~C------~~kI~k~L~~l~GV~~v~v 124 (277)
++.|.+-+..++| ...|+.+|..++||.+|+|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 4455554445444 4778889999999998875
No 27
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=46.98 E-value=62 Score=24.64 Aligned_cols=65 Identities=18% Similarity=0.329 Sum_probs=41.8
Q ss_pred eEEEEEee-cccCchhHHHHHHHhhccCCeeEEEee-----cCCCeEEE--cc-CCChHHHHHHHHHhcCCcEEEe
Q 023785 91 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPD-----LKNSQVTV--KG-VFDPPKLVDYVYKRTGKHAVIV 157 (277)
Q Consensus 91 ~~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd-----~~~~~vtV--~~-~~~~~~l~~~l~k~~G~~a~~v 157 (277)
.++++|.| --|-++ .-.+-+.|..++||..+.+. ..+..+.| .| .++.+.|.+.| +++|-.++-+
T Consensus 4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~I-e~~Gg~IHSI 77 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAI-EELGGVIHSI 77 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHH-HHTT-EEEEE
T ss_pred eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHH-HHcCCeEEee
Confidence 45677777 334443 45667788999999887764 33444444 45 59999999999 5888655443
No 28
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=44.11 E-value=3.3e+02 Score=29.62 Aligned_cols=123 Identities=13% Similarity=0.218 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCCceEEEEeCCCCeEE--EeccC-CChH----HHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCC
Q 023785 6 CARKVRRCLKGFEGVEDVITDCKTHKVI--VKGEK-ADPL----KVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKA 78 (277)
Q Consensus 6 Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~--V~~~~-~~~~----~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~ 78 (277)
-...|++.|..++|+..+.-....+..+ |.... ++++ ++.++|.+. .... |. + .
T Consensus 62 Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~~-~~~L------P~-----------~-~ 122 (1009)
T COG0841 62 VTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQA-ESRL------PS-----------G-V 122 (1009)
T ss_pred HhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHHHH-HhcC------CC-----------c-c
Confidence 3467999999999999886655555544 43222 2444 444555432 1100 00 0 0
Q ss_pred CCCCCcCCCCCceEEEEEee-c--cc----CchhHHHHHHHhhccCCeeEEEeecC-CCeEEEc--------cCCChHHH
Q 023785 79 PPKPEEKKEEPQVIIVVLKV-H--MH----CEGCSLEIKKRILRMEGVESAEPDLK-NSQVTVK--------GVFDPPKL 142 (277)
Q Consensus 79 ~~~~~~~~~~~~~~~~~l~V-g--m~----C~~C~~kI~k~L~~l~GV~~v~vd~~-~~~vtV~--------~~~~~~~l 142 (277)
..+..........-.+.+.+ . +. -..-...|+..|.+++||.+|++.-. ...+.|. ..+++.++
T Consensus 123 ~~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV 202 (1009)
T COG0841 123 QQPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDV 202 (1009)
T ss_pred CCCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHH
Confidence 00000000011112233444 2 22 01235668999999999999999776 4445564 35889999
Q ss_pred HHHHH
Q 023785 143 VDYVY 147 (277)
Q Consensus 143 ~~~l~ 147 (277)
..+|+
T Consensus 203 ~~ai~ 207 (1009)
T COG0841 203 QSAIR 207 (1009)
T ss_pred HHHHH
Confidence 99995
No 29
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=40.12 E-value=1.4e+02 Score=27.49 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccCCChHHHHHHHhhccCCcc-cccCCCCCCCchhHHHhhhcCCCCCC
Q 023785 4 EGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQV-ELLSPIPKPTAAEEEKKAEEKAPPKP 82 (277)
Q Consensus 4 ~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~~~~~~i~~~I~~~~G~~a-~~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (277)
..|+..++..+.+++||.++.+ . +.++-...+++..|+.. ...+..
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~---------~----sre~~l~~L~~~lg~~~~~~l~~n-------------------- 117 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRF---------I----SREEALKELQPWLGFGALLMLDEN-------------------- 117 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEE---------e----CHHHHHHHHHHHcCchhhhcCCCC--------------------
Confidence 3577778888888899886642 1 44444444444446531 111111
Q ss_pred CcCCCCCceEEEEEeecccCchhHHHHHHHhhccCCeeEEEeec
Q 023785 83 EEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDL 126 (277)
Q Consensus 83 ~~~~~~~~~~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~ 126 (277)
|....+++++ .-+.-...+.+.|..++||.+|+-+.
T Consensus 118 ------PLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~~ 153 (297)
T COG2177 118 ------PLPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDDR 153 (297)
T ss_pred ------CCCceEEEEe--CCCccHHHHHHHHHcCccceehhcch
Confidence 2222345555 23778899999999999999877553
No 30
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=39.90 E-value=72 Score=26.96 Aligned_cols=54 Identities=15% Similarity=0.324 Sum_probs=32.2
Q ss_pred EEEEeecccCchhH------HHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcC
Q 023785 93 IVVLKVHMHCEGCS------LEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTG 151 (277)
Q Consensus 93 ~~~l~Vgm~C~~C~------~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G 151 (277)
.+.+.+-++.++|. ..|+.+|..++||.++.|++.. ...-+++.|.+..|.++|
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l~~-----dp~W~~~~~s~~ar~~lg 173 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVELVF-----DPPWSREMMSEAAKLELG 173 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEEe-----cCCCChHHCCHHHHHHcC
Confidence 34444445555554 4588899999999988886622 223445555555543444
No 31
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=39.47 E-value=69 Score=22.16 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=28.6
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEe
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 35 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~ 35 (277)
++|..|...++..+...+++....+++......+.
T Consensus 32 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 32 MTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred eEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 46999999999999999998878778777775554
No 32
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.42 E-value=1.3e+02 Score=20.64 Aligned_cols=51 Identities=12% Similarity=0.276 Sum_probs=35.4
Q ss_pred Eee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEc--cCCChHHHHHHHHHhcCCcEEEe
Q 023785 96 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 157 (277)
Q Consensus 96 l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~--~~~~~~~l~~~l~k~~G~~a~~v 157 (277)
|.+ |+.|+.=.-.+.++| .+..- +.+.|. ......+|...+ +..||.....
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g---------~~l~v~~d~~~s~~~i~~~~-~~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAG---------GEIEVLVDNEVAKENVSRFA-ESRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCC---------CEEEEEEcChhHHHHHHHHH-HHcCCEEEEE
Confidence 456 999999999999999 66322 223332 334557888888 4899988543
No 33
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=37.27 E-value=74 Score=26.18 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.3
Q ss_pred EEEEEee-cccCchhHHHHHHHhhccCCeeEEEeecC-CCeEEE
Q 023785 92 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLK-NSQVTV 133 (277)
Q Consensus 92 ~~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~-~~~vtV 133 (277)
..++|.| --.|..|..-|...+.++ |+.++.|... ++++.+
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~~ 142 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVYY 142 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEEE
Confidence 3577888 789999999999888876 8998888776 554443
No 34
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=34.25 E-value=1.1e+02 Score=22.85 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=22.9
Q ss_pred EEEEee-cccCchh---HHHHHHHhhccCCeeEEEeecC
Q 023785 93 IVVLKV-HMHCEGC---SLEIKKRILRMEGVESAEPDLK 127 (277)
Q Consensus 93 ~~~l~V-gm~C~~C---~~kI~k~L~~l~GV~~v~vd~~ 127 (277)
.+.|.+ .-.|... ...|+.+|..++|+.++.+++.
T Consensus 40 ~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 40 DIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEEE
Confidence 445555 3334433 2457888999999999988763
No 35
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=30.38 E-value=32 Score=15.89 Aligned_cols=8 Identities=25% Similarity=0.799 Sum_probs=4.3
Q ss_pred ccCCCCCC
Q 023785 248 YYYPQRYA 255 (277)
Q Consensus 248 ~~~p~~~~ 255 (277)
+|.||-|.
T Consensus 4 fw~ppiyp 11 (12)
T PF08248_consen 4 FWPPPIYP 11 (12)
T ss_pred cCCCCccc
Confidence 45566554
No 36
>PRK11018 hypothetical protein; Provisional
Probab=30.09 E-value=2.1e+02 Score=20.49 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=39.5
Q ss_pred EEEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEc--cCCChHHHHHHHHHhcCCcEEEe
Q 023785 93 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 157 (277)
Q Consensus 93 ~~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~--~~~~~~~l~~~l~k~~G~~a~~v 157 (277)
..+|.+ |+.|+.-.-+.+++|.++..-+ .+.|. ......+|...+ +..||.+...
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G~---------~L~V~~d~~~a~~di~~~~-~~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKGE---------ILEVVSDCPQSINNIPLDA-RNHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCCC---------EEEEEeCCccHHHHHHHHH-HHcCCEEEEE
Confidence 357888 9999999999999999885332 22332 335567788888 5899987543
No 37
>PRK13748 putative mercuric reductase; Provisional
Probab=29.78 E-value=1.7e+02 Score=28.80 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=40.0
Q ss_pred CCchhHHHHHHHHHhCCCCceEEEEeCCCCeEEEeccC-CChHHHHHHHhhccCCcccc
Q 023785 1 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK-ADPLKVLDRVQRKSHRQVEL 58 (277)
Q Consensus 1 M~C~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~v~V~~~~-~~~~~i~~~I~~~~G~~a~~ 58 (277)
|+|.+|...++..+..++++....+++..+...+.... .....+...+.. +|+...+
T Consensus 9 ~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~-~g~~~~~ 66 (561)
T PRK13748 9 MTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAG-LGYRATL 66 (561)
T ss_pred eecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHH-cCCeeec
Confidence 57999999999999999998888888888886665311 134444444543 4665543
No 38
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=29.67 E-value=1.1e+02 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=19.7
Q ss_pred hhHHHHHHHhhccCCeeEEEeecCCCe
Q 023785 104 GCSLEIKKRILRMEGVESAEPDLKNSQ 130 (277)
Q Consensus 104 ~C~~kI~k~L~~l~GV~~v~vd~~~~~ 130 (277)
+|-.-++..+.+++||.++.+-..++.
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCC
Confidence 344556666778899999999776654
No 39
>PF05663 DUF809: Protein of unknown function (DUF809); InterPro: IPR008527 This family consists of several proteins of unknown function Raphanus sativus (Radish) and Brassica napus (Rape).
Probab=29.67 E-value=1.2e+02 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=22.6
Q ss_pred CchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHH
Q 023785 102 CEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYV 146 (277)
Q Consensus 102 C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l 146 (277)
-.+|.+.+ +.|.++.=-...+..-..-+++|...+..+.+...+
T Consensus 46 nqhclrtm-rhleklkipyefqygwlgvkitiksnvpndevtkkv 89 (138)
T PF05663_consen 46 NQHCLRTM-RHLEKLKIPYEFQYGWLGVKITIKSNVPNDEVTKKV 89 (138)
T ss_pred cHHHHHHH-HHHHhcCCCeeeeecceeEEEEEecCCCchHhhhcc
Confidence 44565443 445555443444444444556666666655555444
No 40
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=27.23 E-value=2.4e+02 Score=20.33 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=40.7
Q ss_pred hHHHHHHHhhccCCcccccCCCCCCCchhHHHhhhcCCCCCCCcCCCCCceEEEEEeecccCchhHHHHHHHhhccCCee
Q 023785 41 PLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVE 120 (277)
Q Consensus 41 ~~~i~~~I~~~~G~~a~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Vgm~C~~C~~kI~k~L~~l~GV~ 120 (277)
...+...+++ .||.+..++..+. ..+....+++.|+ .......|.+-|.++.+|.
T Consensus 17 L~Ri~~lf~r-RGfnI~sl~v~~t----------------------~~~~~sriti~v~--~~~~i~ql~kQL~KL~dV~ 71 (76)
T PRK11152 17 LERVLRVVRH-RGFQVCSMNMTQN----------------------TDAQNINIELTVA--SERPIDLLSSQLNKLVDVA 71 (76)
T ss_pred HHHHHHHHhc-CCeeeeeEEeeec----------------------CCCCEEEEEEEEC--CCchHHHHHHHHhcCcCeE
Confidence 4555566665 4998865544321 1233556667664 6889999999999999998
Q ss_pred EEEe
Q 023785 121 SAEP 124 (277)
Q Consensus 121 ~v~v 124 (277)
.+.+
T Consensus 72 ~V~~ 75 (76)
T PRK11152 72 HVEI 75 (76)
T ss_pred EEEE
Confidence 8875
No 41
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.28 E-value=1.6e+02 Score=20.02 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=24.4
Q ss_pred EEEEEeecccCch-hHHHHHHHhhccCCeeEEEe
Q 023785 92 IIVVLKVHMHCEG-CSLEIKKRILRMEGVESAEP 124 (277)
Q Consensus 92 ~~~~l~Vgm~C~~-C~~kI~k~L~~l~GV~~v~v 124 (277)
..+.|.|...-.. -...|.+.|.+++||.+|.+
T Consensus 41 ~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 41 ANVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 3455555444554 78899999999999999875
No 42
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=25.27 E-value=2.1e+02 Score=21.24 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=31.2
Q ss_pred chhHHHHHHHhhccCCeeEEEeecCCCeEEEc-cCCChHHHHHHH
Q 023785 103 EGCSLEIKKRILRMEGVESAEPDLKNSQVTVK-GVFDPPKLVDYV 146 (277)
Q Consensus 103 ~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~-~~~~~~~l~~~l 146 (277)
+.-...+.+.|..++|+.-...|...+++.|+ ...+...+.+.|
T Consensus 16 Pe~~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i 60 (87)
T PRK10553 16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTI 60 (87)
T ss_pred hHHHHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHH
Confidence 34478899999999999877777777888776 334555555544
No 43
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=25.19 E-value=2.5e+02 Score=28.44 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=45.9
Q ss_pred EEee-cccCchhHHHHHHHhhccCCeeEEEeecCCC--------eEEEccCCChHHHHHHHHHhcCCcEEEecCCCCcc
Q 023785 95 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNS--------QVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPEKK 164 (277)
Q Consensus 95 ~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~--------~vtV~~~~~~~~l~~~l~k~~G~~a~~v~~~~~~~ 164 (277)
.|-| |+....-+..+...+++.--|..+.|-..+. -||.....+....|..|+ ++-.+-.+++++-..+
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLH-rTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLH-RTELHGRMISVEKAKN 484 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhh-hhhhcceeeeeeeccc
Confidence 5778 9988888888888888887777665532211 122223455666788886 6777778888766543
No 44
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=24.77 E-value=2.7e+02 Score=21.29 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=31.5
Q ss_pred EEEee-cccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEc--cCCChHHHHHHHH
Q 023785 94 VVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVY 147 (277)
Q Consensus 94 ~~l~V-gm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~--~~~~~~~l~~~l~ 147 (277)
+.|+| |++-..+...|+..|..+..|.-|.+........|. ..-....++..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 35677 777777799999999999989888887766666665 3455778888884
No 45
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=23.74 E-value=2.7e+02 Score=19.60 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=29.9
Q ss_pred hhccCCeeEEEeecCC-CeEEEccCCChHHHHHHHHHhcCCcEEEec
Q 023785 113 ILRMEGVESAEPDLKN-SQVTVKGVFDPPKLVDYVYKRTGKHAVIVK 158 (277)
Q Consensus 113 L~~l~GV~~v~vd~~~-~~vtV~~~~~~~~l~~~l~k~~G~~a~~v~ 158 (277)
|..++||.++...-.. -.+.|........|+..|. ..|. +.-..
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~f~ 70 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELI-EKGI-IRSFE 70 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHH-hCCC-eeEEE
Confidence 7778999998764432 2444555677888999995 6787 54443
No 46
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=21.59 E-value=3e+02 Score=19.86 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=29.9
Q ss_pred hhHHHHHHHhhccCCeeEEEeecCCCeEEEc-cCCChHHHHHHH
Q 023785 104 GCSLEIKKRILRMEGVESAEPDLKNSQVTVK-GVFDPPKLVDYV 146 (277)
Q Consensus 104 ~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~-~~~~~~~l~~~l 146 (277)
.=...+.++|..++|+.-...+.. +++.|+ -..+...+.+.+
T Consensus 15 ~~~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~ 57 (79)
T PF03927_consen 15 ERLEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLI 57 (79)
T ss_dssp CCHHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHH
Confidence 456788999999999976666666 777765 345556666665
No 47
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=20.39 E-value=3.4e+02 Score=24.98 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred EEEEeecccCchhHHHHHHHhhccCCeeEEEeecCCCeEEEccCCChHHHHHHHHHhcCCc
Q 023785 93 IVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKH 153 (277)
Q Consensus 93 ~~~l~Vgm~C~~C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~~~~~~~l~~~l~k~~G~~ 153 (277)
.+.|+++.+ ..|...++..|.+++||.++++ ++.++-.+.+++.+|+.
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~ 109 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG 109 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch
Confidence 455565555 8899999999999999998775 34556666665667764
No 48
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=20.17 E-value=1.9e+02 Score=24.46 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhCCCCceEEEEeCCCCe
Q 023785 4 EGCARKVRRCLKGFEGVEDVITDCKTHK 31 (277)
Q Consensus 4 ~~Ca~~Ie~~L~~l~GV~~v~vdl~~~~ 31 (277)
++|-+.++..+.+++||.++.+-...+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 5799999999999999999988766654
No 49
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH). The archeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup enzymes within the metallo-beta-lactamase fold. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH domains are known to bind single-stranded RNA or DNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=20.10 E-value=3.3e+02 Score=22.36 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=40.4
Q ss_pred hHHHHHHHhhccCCeeEEEeecCCCeEEEcc----C-C-ChHHHHHHHHHhcCCcEEEecCCCC
Q 023785 105 CSLEIKKRILRMEGVESAEPDLKNSQVTVKG----V-F-DPPKLVDYVYKRTGKHAVIVKQEPE 162 (277)
Q Consensus 105 C~~kI~k~L~~l~GV~~v~vd~~~~~vtV~~----~-~-~~~~l~~~l~k~~G~~a~~v~~~~~ 162 (277)
-...|.+.+-.-.||.++.+|..++.|.|.. . + -....+..|..++|+...++..+|.
T Consensus 54 A~~~I~~ivP~ea~i~di~Fd~~tGEV~IeaeKPG~ViGk~g~~~reI~~~tgW~p~vvRtpPi 117 (145)
T cd02410 54 AIKIILEIVPEEAGITDIYFDDDTGEVIIEAEKPGLVIGKGGSTLREITRETGWAPKVVRTPPI 117 (145)
T ss_pred HHHHHHHhCCCccCceeeEecCCCcEEEEEEcCCeEEEecCchhHHHHHHHhCCeeEEEecCCC
Confidence 3456666666667999999999999998862 1 1 1233334444689999999887764
Done!