BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023786
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C920|KDSB_ARATH 3-deoxy-manno-octulosonate cytidylyltransferase, mitochondrial
OS=Arabidopsis thaliana GN=KDSB PE=1 SV=1
Length = 290
Score = 446 bits (1147), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/250 (88%), Positives = 234/250 (93%)
Query: 17 KSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPM 76
K+WIV+GI+AG AIA A+GARAYLGRSK FRSRVVGIIPAR+ASSRFEGKPLV ILGKPM
Sbjct: 12 KTWIVNGILAGTAIAAAIGARAYLGRSKKFRSRVVGIIPARYASSRFEGKPLVQILGKPM 71
Query: 77 IQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEK 136
IQRTWERSKLATTLDH+VVATDDE+IAECC+ FGADVIMTSESCRNGTERCNEAL+KLEK
Sbjct: 72 IQRTWERSKLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALEKLEK 131
Query: 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH 196
KYD+VVNIQGDEPLIEPEIIDGVVKALQ PDAVFSTAVTSLKPED DPNRVKCVVDN
Sbjct: 132 KYDVVVNIQGDEPLIEPEIIDGVVKALQVTPDAVFSTAVTSLKPEDGLDPNRVKCVVDNR 191
Query: 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLK 256
GYAIYFSRGLIPYNKSGKVNP FPY+LHLGIQS+DS FLK+Y L PTPLQ EEDLEQLK
Sbjct: 192 GYAIYFSRGLIPYNKSGKVNPDFPYMLHLGIQSFDSKFLKVYSELQPTPLQQEEDLEQLK 251
Query: 257 VLENGYKMKV 266
VLENGYKMKV
Sbjct: 252 VLENGYKMKV 261
>sp|Q6MD00|KDSB_PARUW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia
amoebophila (strain UWE25) GN=kdsB PE=3 SV=1
Length = 259
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/221 (49%), Positives = 142/221 (64%), Gaps = 3/221 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++GIIPAR+ S+RF GKPL +ILGK ++QRT+E S A+ L L+VATDDE+I E +
Sbjct: 9 QIIGIIPARYGSTRFPGKPLASILGKTLLQRTYENSLRASALSDLIVATDDERIFEHVRS 68
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166
F V+MTSE C GT+R E L + +VNIQGDEP + P I+ V+AL
Sbjct: 69 FNGKVVMTSEQCPTGTDRLAEVLSLYPEWMHATAIVNIQGDEPCLNPLTINLAVQALVND 128
Query: 167 PDAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
P ST VT L E+A + + VKCV+D G A+YFSR LIP NK+ Y HL
Sbjct: 129 PQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHL 188
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
G+ Y +F+ Y L TPLQLEEDLEQLKVLE+GY++KV
Sbjct: 189 GLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKV 229
>sp|Q9PKL1|KDSB_CHLMU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=kdsB PE=3 SV=2
Length = 254
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 143/221 (64%), Gaps = 5/221 (2%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+PAR+ SSRF GKPL ILGK +IQR++E + + +LD +VVATDD++I +
Sbjct: 7 SKRVGILPARWGSSRFPGKPLAKILGKTLIQRSYENALTSRSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MT ESC NGTER EA+ + + +IVVNIQGDEP + P IIDG+V+ L+ P
Sbjct: 67 EFGGLCVMTCESCANGTERVEEAVSQHFPQAEIVVNIQGDEPCLSPSIIDGLVEMLEGNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T VT ++ P+ ++VKCV D G A+YFSR +IP N P LH+G
Sbjct: 127 AIDIATPVTETVDPDAILTNHKVKCVFDKTGRALYFSRSVIPNNFKRST----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+ ++ FL Y + P+ L L EDLEQL+VLE+G + V
Sbjct: 183 VYAFRRAFLSEYVKIPPSSLSLAEDLEQLRVLESGRSIYVH 223
>sp|B0BBG2|KDSB_CHLTB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2b (strain UCH-1/proctitis) GN=kdsB
PE=3 SV=1
Length = 254
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 140/221 (63%), Gaps = 5/221 (2%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+ ++ FL Y + P+ L L EDLEQL+VLE G + V
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVH 223
>sp|B0B9T2|KDSB_CHLT2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar L2 (strain 434/Bu / ATCC VR-902B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 140/221 (63%), Gaps = 5/221 (2%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+ ++ FL Y + P+ L L EDLEQL+VLE G + V
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVH 223
>sp|P0CD75|KDSB_CHLTR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis (strain D/UW-3/Cx) GN=kdsB PE=3 SV=1
Length = 254
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T+VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+ ++ FL Y + P+ L L EDLEQL+VLE G + V
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYVH 223
>sp|Q3KMI0|KDSB_CHLTA 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
trachomatis serovar A (strain HAR-13 / ATCC VR-571B)
GN=kdsB PE=3 SV=1
Length = 254
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
S+ VGI+P+R+ SSRF GKPL ILGK ++QR++E + + +LD +VVATDD++I +
Sbjct: 7 SKKVGILPSRWGSSRFPGKPLAKILGKTLVQRSYENALSSQSLDCVVVATDDQRIFDHVV 66
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
+FG +MTS SC NGTER E + + + +IVVNIQGDEP + P +IDG+V L+ P
Sbjct: 67 EFGGLCVMTSTSCANGTERVEEVVSRHFPQAEIVVNIQGDEPCLSPTVIDGLVSTLENNP 126
Query: 168 DAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
A T+VT + PE ++VKCV D +G A+YFSR IP+N P LH+G
Sbjct: 127 AADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIG 182
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+ ++ FL Y + P+ L L EDLEQL+VLE G + V
Sbjct: 183 VYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYVH 223
>sp|Q8RFA8|KDSB_FUSNN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=kdsB PE=3 SV=1
Length = 245
Score = 188 bits (477), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 140/222 (63%), Gaps = 6/222 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR++S+R EGKPL I G MI+ ++R+K + LD L+VATDDE+I
Sbjct: 2 KFLGIIPARYSSTRLEGKPLKMIEGHTMIEWVYKRAK-KSNLDSLIVATDDERIYNEVIN 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG IMTS++ NGT R E +K+ +YD ++NIQGDEPLIE E+I+ +++ + D
Sbjct: 61 FGGQAIMTSKNHTNGTSRIAEVCEKM-TEYDTIINIQGDEPLIEYEMINSLIETFKENKD 119
Query: 169 AVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
+T L E+ +PN VK V D + YAIYFSR +IPY + N Y H+GI
Sbjct: 120 LKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGI 176
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
Y +F+ Y + TPL+ E LEQL+VLENGYK+KV +T
Sbjct: 177 YGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLET 218
>sp|A6L9D4|KDSB_PARD8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=kdsB PE=3 SV=1
Length = 251
Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 141/226 (62%), Gaps = 11/226 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ +GIIPAR+AS+RF GKPL ++ GKPMIQR +E+ K LD + VATDD +I +
Sbjct: 3 KFIGIIPARYASTRFPGKPLADMNGKPMIQRVYEQVK--DVLDSVCVATDDIRIENAVKA 60
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V+MTS+ R+GT+RC EA QK+ + YD++VNIQGDEP I PE I +K A +
Sbjct: 61 FGGQVVMTSDQHRSGTDRCYEAYQKIGEGYDVIVNIQGDEPFIHPEQIQ-TIKTCFADAN 119
Query: 169 AVFSTAVTSLKPED-----AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP--- 220
+T V + +D F+PN K V++ + A+YFSR +IPY + K P
Sbjct: 120 TQIATLVKPFRSDDDFESSLFNPNSPKVVLNKNNEAMYFSRSIIPYIRGKKYTEWLPSHT 179
Query: 221 YLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+ H+G+ +Y + LK L + L+L E LEQL+ LENGYK+KV
Sbjct: 180 FYKHIGLYAYRAQVLKEITQLPQSALELAESLEQLRWLENGYKIKV 225
>sp|Q254V8|KDSB_CHLFF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
felis (strain Fe/C-56) GN=kdsB PE=3 SV=1
Length = 254
Score = 186 bits (473), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 138/217 (63%), Gaps = 5/217 (2%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
F S+ VG++PAR+ S RF GKPL NILGK +IQRT+E +TTLD +VVATD+++I +
Sbjct: 6 FASKKVGVLPARWGSVRFTGKPLANILGKSLIQRTYENISQSTTLDKVVVATDNQRIMDH 65
Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
FG D +MTS C NGTER EA+ + + +I+VNIQGDEP ++ ++D +V+ L+
Sbjct: 66 VLDFGGDCVMTSPECANGTERTAEAISRYFPEAEIIVNIQGDEPCLQHTVVDTLVRKLEE 125
Query: 166 APD-AVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
+P+ V + A + + +VKCV D +G A+YFSR IP+ + + P LH
Sbjct: 126 SPEIQVVTPAAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIYLH 181
Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENG 261
+G+ ++ N L Y PT L EDLEQL++LE+G
Sbjct: 182 IGVYAFRRNALFSYIESTPTSLSQAEDLEQLRILEHG 218
>sp|C6E0M8|KDSB_GEOSM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain M21) GN=kdsB PE=3 SV=1
Length = 252
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 141/232 (60%), Gaps = 11/232 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ +IPAR+AS+RFEGK L +I+G+PM+Q +ER+ AT + ++VATDDE+IA +
Sbjct: 2 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E K++ DIVVN+QGDEPLI+P +ID ++ L P
Sbjct: 62 FGGRVEMTSPTHETGTDRLAEVAAKIDA--DIVVNVQGDEPLIDPAMIDEAIRPLLDDPS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK--------SGKVNPQF 219
+T +K D PN VK V D G +YFSR +P+ + V+ +
Sbjct: 120 IPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKL 179
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
H+G+ Y FL ++ GL PT L+L E LEQL+VLENGY++K+ +T F
Sbjct: 180 LCYKHVGLYVYRREFLPVFAGLKPTYLELAEKLEQLRVLENGYRIKIVETEF 231
>sp|A0LE62|KDSB_SYNFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=kdsB PE=3 SV=1
Length = 250
Score = 186 bits (471), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 141/221 (63%), Gaps = 5/221 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
R+VGIIPAR+ SSRF GKPLV+ILGKPMI+ +ERS A LD L+VATDD +IA
Sbjct: 2 RIVGIIPARYQSSRFPGKPLVDILGKPMIRHVYERSARAGCLDRLIVATDDARIAAAVAG 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG + ++T +GT+R EA + LE DIVVNIQGDEPL+ +I+ +V+ALQ
Sbjct: 62 FGGEALLTRADHASGTDRLAEAARLLELDGADIVVNIQGDEPLVNHRMIEALVEALQCDR 121
Query: 168 DAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVN-PQFPYLLHL 225
+T A S +D +PN VK V+D A+YFSR IP+ + G + P F L HL
Sbjct: 122 HCPMATLAFPSESLQDYNNPNVVKVVLDRGLRALYFSRAPIPFVRDGAADAPAF--LKHL 179
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
G +Y ++FL+ + L P L+ E LEQL+ LE+GY ++V
Sbjct: 180 GFYAYSASFLQTFSRLPPGRLEGLEKLEQLRALEHGYGIRV 220
>sp|B5E8N2|KDSB_GEOBB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622)
GN=kdsB PE=3 SV=2
Length = 255
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 141/232 (60%), Gaps = 11/232 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ +IPAR+AS+RFEGK L +I+G+PM+Q +ER+ AT + ++VATDDE+IA +
Sbjct: 6 KITAVIPARYASTRFEGKALADIMGRPMVQHVYERAAKATLVSEVIVATDDERIAAAVRA 65
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E +++ DI+VN+QGDEPLI+P +ID ++ L P
Sbjct: 66 FGGRVEMTSPTHETGTDRLAEVAARIDA--DIIVNVQGDEPLIDPAMIDEAIRPLLDDPS 123
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK--------SGKVNPQF 219
+T +K D PN VK V D G +YFSR +P+ + V+ +
Sbjct: 124 IPMATLKCRIKTLHDFLSPNVVKVVSDPTGNVLYFSRSPLPFFRDKWNDLKDDAFVSGKL 183
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
H+G+ Y FL ++ GL PT L+L E LEQL+VLENGY++K+ +T F
Sbjct: 184 LCYKHVGLYVYRREFLPVFAGLQPTYLELAEKLEQLRVLENGYRIKIVETEF 235
>sp|A5G5T4|KDSB_GEOUR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1
Length = 251
Score = 185 bits (469), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 138/233 (59%), Gaps = 13/233 (5%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L +I+GKPM+Q +ER+ A+ + ++VATDDE+IA
Sbjct: 2 KITAIIPARYASTRFEGKALADIMGKPMVQHVYERTAKASLVSEVIVATDDERIAAAVHA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS GT+R E +L+ DI+VN+QGDEPLIEP +ID +K L
Sbjct: 62 FGGRAEMTSRVHETGTDRLAEVAARLDS--DIIVNVQGDEPLIEPAMIDEAIKPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------Q 218
+ T T +K D PN VK V D GYA+YFSR +P N K N +
Sbjct: 120 VMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFASRK 178
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
H+G+ Y +FL + + PT L++ E LEQL+VLENGY++KV +T +
Sbjct: 179 LLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDY 231
>sp|Q1GZI3|KDSB_METFK 3-deoxy-manno-octulosonate cytidylyltransferase OS=Methylobacillus
flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=kdsB
PE=3 SV=1
Length = 257
Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 8/224 (3%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ASSR GKPL++I GKPM+ R ERS LA+ +VVATD E+I E +G D
Sbjct: 6 VIPARYASSRLPGKPLLDIAGKPMVVRVIERS-LASGAAEVVVATDHERIQEAVSSYGYD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V+MTS +GT+R E +Q+ + D IVVN+QGDEPLI+P +I V L A +A
Sbjct: 65 VMMTSADHASGTDRIAEVVQQRGWEDDTIVVNVQGDEPLIDPRLIGEVAGNLSAHAEASM 124
Query: 172 STAVTSLKPEDA-FDPNRVKCVVDNHGYAIYFSRGLIPYNKSG-----KVNPQFPYLLHL 225
+TA L + +PN VK V+D G+A+YFSR IPY + + P P H+
Sbjct: 125 ATACHVLHDTPSILNPNIVKVVLDQQGHALYFSRAPIPYPRDAFAANQDIPPGMPIYRHI 184
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
GI +Y + FL+ Y L P+ ++ E LEQL+VL +GYK+ V+ T
Sbjct: 185 GIYAYRAGFLRAYAALTPSAIEYFESLEQLRVLWHGYKISVEIT 228
>sp|Q39W63|KDSB_GEOMG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=kdsB PE=3 SV=1
Length = 254
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 96/232 (41%), Positives = 136/232 (58%), Gaps = 11/232 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RF GK L I+GKPM+Q +ER+ A + ++VATDDE++AE +
Sbjct: 2 KITAIIPARYASTRFPGKALAEIIGKPMVQHVYERTAKAGLVSEVIVATDDERVAEAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG V MTS + GT+R E +++ DI+VN+QGDEPLIEP +ID + L A
Sbjct: 62 FGGRVEMTSATHETGTDRLAEVAARIDA--DIIVNVQGDEPLIEPAMIDEAIAPLVADAS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIP--------YNKSGKVNPQF 219
T + +K D PN VK V D G A+YFSR +P V +
Sbjct: 120 IRMGTLKSRIKSLHDFLSPNVVKVVTDREGDALYFSRSPLPNFRDKWNDLKDEAFVTGRL 179
Query: 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
H+G+ Y +FL + + PTPL+L E LEQL+VLENG++++V +T F
Sbjct: 180 LCYKHVGLYVYRRDFLLAFARMAPTPLELAEKLEQLRVLENGFRIRVVETSF 231
>sp|Q04XW6|KDSB_LEPBL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=kdsB PE=3 SV=1
Length = 246
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 6/219 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
STA L DPNRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
YD +FL Y L + L+ E LEQL+ +E GY + V
Sbjct: 178 YGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGV 216
>sp|Q04VK9|KDSB_LEPBJ 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=kdsB PE=3 SV=1
Length = 246
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 132/219 (60%), Gaps = 6/219 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPLV I K MI+ T+ + +T L LVVATDD +I E Q
Sbjct: 3 KILGVIPARYASSRFPGKPLVKIGDKTMIEWTYRNASRSTALSELVVATDDTRIHEVVQG 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG + +MT +GT+R E + L +Y I++NIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGNSVMTRADHISGTDRIIE-VANLFSEYSIIINIQGDEPGIEPELIDGVAGLKASHPE 121
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
STA L DPNRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WKMSTAAVPLIDFSHGEDPNRVKVIIDRNGKAIYFSRSLIP----SQFKQTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
YD +FL Y L + L+ E LEQL+ +E GY + V
Sbjct: 178 YGYDRDFLLKYNSLPKSNLEESESLEQLRAIEAGYGIGV 216
>sp|Q72UN2|KDSB_LEPIC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=kdsB PE=3 SV=1
Length = 248
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 132/219 (60%), Gaps = 6/219 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 4 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 63
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 64 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 122
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
ST AV L A D NRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 123 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGI 178
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
YD +FL Y L + L+ E LEQL+ +E GY + +
Sbjct: 179 YGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGI 217
>sp|Q8F0C3|KDSB_LEPIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=kdsB PE=3 SV=2
Length = 247
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 132/219 (60%), Gaps = 6/219 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPAR+ASSRF GKPL I K MI+ T+ + ++ L LVVATDD +I E Q+
Sbjct: 3 KILGVIPARYASSRFPGKPLAKIGDKTMIEWTYRNASRSSVLSELVVATDDVRIHEVVQK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG +MTS +GT+R E + +Y I+VNIQGDEP IEPE+IDGV + P+
Sbjct: 63 FGGRSVMTSSDHPSGTDRIIEVANQF-SEYSIIVNIQGDEPGIEPELIDGVASLKASHPE 121
Query: 169 AVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
ST AV L A D NRVK ++D +G AIYFSR LIP + P HLGI
Sbjct: 122 WAMSTAAVPLLDFSHAIDFNRVKVIIDRNGKAIYFSRSLIP----SQFKTTVPLYRHLGI 177
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
YD +FL Y L + L+ E LEQL+ +E GY + +
Sbjct: 178 YGYDRDFLLQYNSLPKSNLEESESLEQLRAIEAGYGIGI 216
>sp|B8FKL0|KDSB_DESAA 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=kdsB
PE=3 SV=1
Length = 245
Score = 181 bits (459), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 98/225 (43%), Positives = 137/225 (60%), Gaps = 4/225 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+VV IIPAR+ S+RFE KPL I GKPMIQR +ER+ A+++ + VATDDE+I ++
Sbjct: 2 KVVVIIPARYGSTRFEAKPLALIAGKPMIQRVYERAAAASSVTGVAVATDDERIVSAVEK 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +MTS++CR+GT+R EA + L DIVVN+QGD+P+ +PE ID V L P
Sbjct: 62 FGGKAVMTSDACRSGTDRVFEAGRTLGLTGSDIVVNVQGDQPVFDPECIDEVTAPLIGDP 121
Query: 168 DAVFST-AVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T A + + DP VK V D G+A+YFSR IP+++ G N +F HLG
Sbjct: 122 GTGMTTLAFAIVNEREMTDPKDVKMVFDQDGWALYFSRATIPHDRDG--NMEFDTYKHLG 179
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
+ +Y +FL + L L+ E LEQL+ LE G +K T +
Sbjct: 180 VYAYTMDFLAEFCSLPEGHLEKIEKLEQLRALEYGLGIKTVVTAY 224
>sp|Q3A370|KDSB_PELCD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=kdsB PE=3
SV=1
Length = 250
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 98/227 (43%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
+ +IPAR+ASSRF GKPL ILGK MIQR +ER+ A +D +VVATDD +IA+ F
Sbjct: 3 ITAVIPARYASSRFPGKPLARILGKTMIQRVYERTAQAACIDRVVVATDDSRIADVVSGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
G +V MT GT+R E +++ + ++VN+QGDEPLI+P +I+ V L P
Sbjct: 63 GGEVQMTRADHATGTDRLAEVTARIDTQ--LIVNVQGDEPLIDPHMIEAAVAPLSEDPAI 120
Query: 170 VFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNK-----SGKVNPQFPYLL 223
T T L ++ DPN VK V D G+A+YFSR IP+ + V+P L
Sbjct: 121 PMGTLKTPLLNWQEYRDPNVVKVVTDRRGFALYFSRAPIPHPRELAVDDSAVSPASMGLF 180
Query: 224 -HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
H+G+ Y +FL + GL +PL+ E LEQL+ LENGY ++V +T
Sbjct: 181 RHIGLYVYRKDFLLTFAGLPESPLERLEKLEQLRALENGYAIRVVET 227
>sp|Q01T78|KDSB_SOLUE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter
usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1
Length = 252
Score = 181 bits (458), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/224 (42%), Positives = 135/224 (60%), Gaps = 5/224 (2%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+++G+IPARF+S+RF GK L I K M+Q +ER+ LAT L ++ATDDE++ +
Sbjct: 4 KILGVIPARFSSTRFPGKVLAQIANKTMLQHVYERAGLATYLTSTIIATDDERVYTAAKS 63
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FGA V MT +GT+R E + +I+VNIQGDEPLI+P ID V L PD
Sbjct: 64 FGARVRMTRADHLSGTDRVAEVASA--ENAEIIVNIQGDEPLIDPAAIDAAVLPLVHEPD 121
Query: 169 AVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGI 227
+ T ++ P + DPN VK V D+ G AIYFSR IP+++ + PY H+G+
Sbjct: 122 VLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIPFDRDRSADT--PYFKHVGL 179
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
Y +FL Y L PL+ E LEQL+ LENGY+++V +T +
Sbjct: 180 YVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVETEY 223
>sp|B2RLM4|KDSB_PORG3 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=kdsB PE=3 SV=1
Length = 254
Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 140/231 (60%), Gaps = 14/231 (6%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER +A + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IAGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-----Q 218
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY + V P +
Sbjct: 120 ETDIATLAEVFSSDASFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRG--VQPDSWCRR 177
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
Y H+GI ++ L+ L + + E LEQL+ LE GY+++V QT
Sbjct: 178 HTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQT 228
>sp|B9M9Q4|KDSB_GEOSF 3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter sp.
(strain FRC-32) GN=kdsB PE=3 SV=1
Length = 253
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 135/233 (57%), Gaps = 13/233 (5%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIPAR+AS+RFEGK L I GKPM+Q +ER+ A+ + ++VATDDE+I +
Sbjct: 2 KITAIIPARYASTRFEGKALAQIQGKPMVQHVYERTLKASLVSEVIVATDDERIVAAVRA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
FG MTS S GT+R E +L+ DI+VN+QGDEPLI+P +ID + L
Sbjct: 62 FGGRAEMTSRSHETGTDRLAEVAARLDS--DIIVNVQGDEPLIDPAMIDEAISPLAEDSS 119
Query: 169 AVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------Q 218
+ T T +K D PN VK V D GYA+YFSR +P N K N +
Sbjct: 120 LLMGTLKTRIKSLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFSSRK 178
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
H+G+ Y FL + + PT L++ E LEQL+VLENGY++KV +T F
Sbjct: 179 LLCFKHVGLYVYRREFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDF 231
>sp|Q4QPI6|KDSB_HAEI8 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain 86-028NP) GN=kdsB PE=3 SV=1
Length = 254
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE 228
>sp|A5UFM6|KDSB_HAEIG 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittGG) GN=kdsB PE=3 SV=1
Length = 254
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/224 (45%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGANRVIIATDNENVADVVKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDGEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
H+GI +Y S F+K Y PT L+ E LEQL+VL NG ++ V+
Sbjct: 185 HIGIYAYRSGFIKQYMQWAPTQLENLEKLEQLRVLYNGERIHVE 228
>sp|Q822T3|KDSB_CHLCV 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
caviae (strain GPIC) GN=kdsB PE=3 SV=1
Length = 254
Score = 179 bits (453), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 137/222 (61%), Gaps = 5/222 (2%)
Query: 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAEC 105
F S+ VG++PAR+ S+RF GKPL +ILGK +I+RT+E + LD ++VATDD++I +
Sbjct: 6 FASKKVGVLPARWGSARFTGKPLASILGKSLIRRTYENINQSIALDKVIVATDDQRIMDH 65
Query: 106 CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165
FG D ++TS C NGTER E + + + +I+VNIQGDEP ++ ++D +V+ L+
Sbjct: 66 VLDFGGDCVLTSPECANGTERTAETISRYFPEAEIIVNIQGDEPCLQHTVVDALVRKLEE 125
Query: 166 APDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLH 224
P+ T V + + +VKCV D +G A+YFSR IP+ + + P LH
Sbjct: 126 FPEIQIVTPVAKTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIYLH 181
Query: 225 LGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+G+ ++ N L Y PTPL EDLEQL++LE+G + V
Sbjct: 182 IGVYAFRRNALFNYIESSPTPLSQAEDLEQLRILEHGGSIHV 223
>sp|A1RJ74|KDSB_SHESW 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp.
(strain W3-18-1) GN=kdsB PE=3 SV=1
Length = 245
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 8/221 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
F A + D DP +VK V DN+ YA+YFSR IP+ G+ +P HL
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPF---GRDTQDYPVFKHL 178
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
GI +Y S F++ + L L+ E LEQL+ LE+G+K+K+
Sbjct: 179 GIYAYTSKFVQTFAALPLGRLEDLEKLEQLRALEHGHKIKI 219
>sp|A4Y7B5|KDSB_SHEPC 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=kdsB PE=3
SV=1
Length = 245
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 137/221 (61%), Gaps = 8/221 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V+ +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VILLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKATVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R NEA++ L K D+V+N+QGD+PLI+P I+ ++ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINEAIKLLGLKDDDLVINVQGDQPLIDPTAIEQLINLFERQP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
F A + D DP +VK V DN+ YA+YFSR IP+ G+ +P HL
Sbjct: 122 GEFEMATLGYEIVNKADIDDPMQVKMVFDNNYYALYFSRSRIPF---GRDTQDYPVFKHL 178
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
GI +Y S F++ + L L+ E LEQL+ LE+G+K+K+
Sbjct: 179 GIYAYTSKFVQTFAALPLGRLEDLEKLEQLRALEHGHKIKI 219
>sp|A5UB81|KDSB_HAEIE 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain PittEE) GN=kdsB PE=3 SV=1
Length = 254
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 10/224 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIAGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKNFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQF--------PYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQNVQKVQLADAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE 228
>sp|P44490|KDSB_HAEIN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=kdsB PE=1 SV=2
Length = 254
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 138/224 (61%), Gaps = 10/224 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPARFASSR GKPL +I GKPMIQ +E++ L + +++ATD+E +A+ + FGA+
Sbjct: 6 IIPARFASSRLPGKPLADIKGKPMIQHVFEKA-LQSGASRVIIATDNENVADVAKSFGAE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++KL +I+VNIQGDEPLI P I+ V L +
Sbjct: 65 VCMTSVNHNSGTERLAEVVEKLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ--------FPYLL 223
S AV E+ F+PN VK + D GY +YFSR +IPY++ +N Q YL
Sbjct: 125 SLAVKIHDAEELFNPNAVKVLTDKDGYVLYFSRSVIPYDRDQFMNLQDVQKVQLSDAYLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
H+GI +Y + F+K Y PT L+ E LEQL+VL NG ++ V+
Sbjct: 185 HIGIYAYRAGFIKQYVQWAPTQLENLEKLEQLRVLYNGERIHVE 228
>sp|Q7MTW6|KDSB_PORGI 3-deoxy-manno-octulosonate cytidylyltransferase OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=kdsB PE=3 SV=1
Length = 254
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 139/231 (60%), Gaps = 14/231 (6%)
Query: 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ 107
+ V+ IIPARFASSRF GKPL ++LGK MIQR ER + + VVATDDE+I + +
Sbjct: 3 TEVIAIIPARFASSRFPGKPLADMLGKSMIQRVHER--IVGVVPRAVVATDDERIRQAVE 60
Query: 108 QFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG +V+MTS C +GTERC EA K+ + IV+N+QGDEP I+ E ID ++ A P
Sbjct: 61 DFGGEVVMTSPECSSGTERCREAFDKVGRGEKIVLNLQGDEPFIQKEQIDLLISAFD-KP 119
Query: 168 DAVFSTAVTSLKPEDAFD----PNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP-----Q 218
+ +T + +F+ PN K V+D+ GYA+YFSR +IPY + V P +
Sbjct: 120 ETDIATLAEVFSSDVSFERLNNPNSPKIVLDHGGYALYFSRSVIPYLRG--VQPDSWCRR 177
Query: 219 FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
Y H+GI ++ L+ L + + E LEQL+ LE GY+++V QT
Sbjct: 178 HTYYKHIGIYAFRPTVLRKITSLPQSTAEQAESLEQLRWLEYGYRIRVLQT 228
>sp|Q3IGX8|KDSB_PSEHT 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=kdsB PE=3 SV=1
Length = 253
Score = 177 bits (449), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/230 (43%), Positives = 143/230 (62%), Gaps = 11/230 (4%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
V +IPAR+ASSR GKPL +I GKPMIQ +E++ L+ +V+ATD +K+ + F
Sbjct: 4 VVVIPARYASSRLPGKPLADICGKPMIQHVYEKACLSGA-SKVVIATDHQKVFDAVSTFT 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQ--AAP 167
+DV+MT E ++GTER E + L+ + IVVN+QGDEPL+ PE + V L AP
Sbjct: 63 SDVLMTREDHQSGTERLAEVVDLLKLDNNTIVVNVQGDEPLLAPENVSQVATLLNESTAP 122
Query: 168 DAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ-----FPYL 222
A S A+ + ED F+PN VK V D + A+YFSR IP+++S + Q P+
Sbjct: 123 MATLSVAIE--EQEDVFNPNAVKVVSDINKNALYFSRASIPFDRSAMMGEQSTLDLTPFQ 180
Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272
H+GI +Y + F+K Y L +PL+ E LEQL+VL +GY +K++Q + T
Sbjct: 181 RHVGIYAYRAGFIKQYIELSVSPLEQLESLEQLRVLYHGYNIKIEQAHIT 230
>sp|Q9Z8U9|KDSB_CHLPN 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia
pneumoniae GN=kdsB PE=3 SV=1
Length = 254
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 134/217 (61%), Gaps = 5/217 (2%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+G++PAR+ SSR+ GKPL I GK +IQRT+E + ++ LD +VVATDD+ I + FG
Sbjct: 11 IGVLPARWNSSRYPGKPLAKIHGKSLIQRTYENASQSSLLDKIVVATDDQHIIDHVTDFG 70
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170
+MTS +C NGTER E +K K +I+VNIQGDEP + E++D +V+ L+++P+A
Sbjct: 71 GYAVMTSPTCSNGTERTGEVARKYFPKAEIIVNIQGDEPCLNSEVVDALVQKLRSSPEAE 130
Query: 171 FSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQS 229
T V + E+ +VKCV D+ G A+YFSR IP+ + P LH+G+ +
Sbjct: 131 LVTPVALTTDREEILTEKKVKCVFDSEGRALYFSRSPIPF----ILKKATPVYLHIGVYA 186
Query: 230 YDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+ L Y TPL EDLEQL+ LE+G K+ V
Sbjct: 187 FKREALFRYLQHSSTPLSDAEDLEQLRFLEHGGKIHV 223
>sp|B0U168|KDSB_FRAP2 3-deoxy-manno-octulosonate cytidylyltransferase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=kdsB PE=3 SV=1
Length = 250
Score = 175 bits (444), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 136/222 (61%), Gaps = 6/222 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR S+R GK L +I GKPMIQR +E+ + +++ATD ++I E + FGA
Sbjct: 7 VIPARLKSTRLPGKMLADIAGKPMIQRVYEQVA-KSKFKSIIIATDSQEIKEVAENFGAK 65
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
VI+T + +GT+R EA+ KL DIVVN+QGDEPLI E I+ + L P+AV
Sbjct: 66 VILTRDDHESGTDRIAEAVTKLGFADEDIVVNVQGDEPLIPVENIEQAAQLLIEKPEAVV 125
Query: 172 STAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFP---YLLHLGI 227
ST + + ED ++PN VK V D + YA+YFSR IP+ + N Q + H+GI
Sbjct: 126 STLCERITEAEDIYNPNNVKVVFDKNNYALYFSRASIPFERGFSENHQVSISEFFRHIGI 185
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
+Y FLK Y L +P++ E LEQL+VL NGYK+ ++Q+
Sbjct: 186 YTYRVGFLKHYAELAISPIEKYEALEQLRVLYNGYKIAIEQS 227
>sp|Q2NUA2|KDSB_SODGM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Sodalis
glossinidius (strain morsitans) GN=kdsB PE=3 SV=1
Length = 251
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG 110
+ IIPARFASSR GKPL +I GKPM+ R ER++ A+ D ++VATD + + E ++ G
Sbjct: 4 IAIIPARFASSRLPGKPLADINGKPMVVRVMERAQ-ASGADRVIVATDHQGVVEAVERAG 62
Query: 111 ADVIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDA 169
+V +T ++GTER E + + + D I+VN+QGDEPLI P+II V L A
Sbjct: 63 GEVYLTRPDHQSGTERLQEVIDRYDFPDDRIIVNVQGDEPLIPPQIILQVADNLAGAEAG 122
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSG----KVNPQFPYLLHL 225
+ + AV E+AF+PN VK VVD GYA+YFSR IP+++ G + + L H+
Sbjct: 123 MATLAVPITTAEEAFNPNAVKVVVDARGYALYFSRATIPWDREGFARSREHLSHSLLRHI 182
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
GI +Y ++F++ Y +PL+ E LEQL+VL G K+ V
Sbjct: 183 GIYAYRADFIRRYVSWSASPLEKIEILEQLRVLWYGEKIHV 223
>sp|B5YGT5|KDSB_THEYD 3-deoxy-manno-octulosonate cytidylyltransferase
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=kdsB PE=3 SV=1
Length = 255
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 142/232 (61%), Gaps = 11/232 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+RF GKPL + KP+IQ +ER+K + +D + VATDD +I + FG
Sbjct: 6 VIPARYGSTRFPGKPLAFLKNKPIIQHVYERAKSSKMIDEVFVATDDSRILHTVESFGGK 65
Query: 113 VIMTSESCRNGTERCNEALQK-LEKKYD-----IVVNIQGDEPLIEPEIIDGVVKALQAA 166
IMTS +GT+R EA+ K L++ Y+ IV+N+QGDEPLI+ E+ID ++ ++
Sbjct: 66 AIMTSSKHPSGTDRIAEAVDKLLQEGYNLQESSIVINLQGDEPLIKKEMIDQLIDLMKNE 125
Query: 167 PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYL 222
D++ + A K +D F+PN VK V D +GYA+YFSR IP+++ G F Y
Sbjct: 126 NDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSPIPFDREKFIKGFSKNNFMY- 184
Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFTIF 274
H+GI Y+ LK + GL + L+ E LEQL+ LENG K+KV T + F
Sbjct: 185 KHIGIYGYNVRILKNFVGLPMSRLEEIESLEQLRALENGIKIKVGLTEYDSF 236
>sp|Q2LY80|KDSB_SYNAS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Syntrophus
aciditrophicus (strain SB) GN=kdsB PE=3 SV=1
Length = 248
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 138/223 (61%), Gaps = 4/223 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++V IIP+R++SSRF+GKPL ++ GKPMIQ +ER + + + VATDD +I E ++
Sbjct: 3 KIVCIIPSRYSSSRFQGKPLADLCGKPMIQHVYERVLKSELVSYAAVATDDSRIFEAVRK 62
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG IMT+ R+GT+R EA+ L+ K DIVVN+QGD+P+ EPE I V + L+ P
Sbjct: 63 FGGKAIMTAARHRSGTDRIAEAVNSLDLKDDDIVVNVQGDQPIFEPEQIAEVTRPLREDP 122
Query: 168 DAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
+T + + + E+ PN VK V D + A+YFSR IPY + + +P Y H G
Sbjct: 123 SLPMATLIYRIVREEEITHPNAVKVVFDRNFNALYFSRATIPYVRDDR-HP-IAYYKHHG 180
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
I +Y FL+ + L ++ E LEQL+ LE GY+++V +T
Sbjct: 181 IYAYRRAFLRTFTALEEGTMERLESLEQLRALEFGYRIRVVET 223
>sp|C5CKW0|KDSB_VARPS 3-deoxy-manno-octulosonate cytidylyltransferase OS=Variovorax
paradoxus (strain S110) GN=kdsB PE=3 SV=1
Length = 257
Score = 174 bits (442), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/229 (39%), Positives = 134/229 (58%), Gaps = 10/229 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
++PAR AS+R KPL +I G PM+ R R+ + +VVA DD I E C + G +
Sbjct: 6 LVPARLASTRLPNKPLADIAGLPMVVRVARRASQSGAA-RVVVAGDDAAIVEACARHGVE 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
I+T + +G++R EA ++L DI+VN+QGDEPLI+P +ID V AL A P+A
Sbjct: 65 AILTRQDHPSGSDRLAEACEQLGLDGSDIIVNVQGDEPLIDPALIDAVASALAAHPEAAM 124
Query: 172 STAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL------- 223
STA + D F +PN VK V+D G A+YFSR IP+ + G N P +L
Sbjct: 125 STAAHEIDSLDDFLNPNVVKAVLDAQGNALYFSRAPIPWWRDGSANGAPPSVLPAPAPLR 184
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272
H+GI Y + F++ +P L P P++ E LEQL+ L +G+++ V ++
Sbjct: 185 HIGIYGYRAGFVRSFPSLAPAPVEATEALEQLRALWHGHRIAVHVSHVA 233
>sp|Q5L5S2|KDSB_CHLAB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydophila
abortus (strain S26/3) GN=kdsB PE=3 SV=1
Length = 254
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 5/224 (2%)
Query: 44 KNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA 103
+ F S+ VG++PAR+ S RF GKPL ILGK +IQRT+E + TLD +VVATDD++I
Sbjct: 4 QTFISKKVGVLPARWGSVRFPGKPLAMILGKSLIQRTYENIIQSETLDKVVVATDDQRIM 63
Query: 104 ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163
+ FG +MTS C NGTER E + + + +I+VNIQGDEP + ++D +V+ L
Sbjct: 64 DHVLDFGGACLMTSPECANGTERMAETVSRYFPEAEIMVNIQGDEPCLRHTVVDALVRKL 123
Query: 164 QAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYL 222
+ P+ T V + + +VKCV D +G A+YFSR IP+ + + P
Sbjct: 124 EEHPEIQMVTPVAQTTDSHEILTNQKVKCVFDKNGKALYFSRSPIPH----ILKKETPIY 179
Query: 223 LHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
LH+G+ ++ + L Y P+PL EDLEQL+VLE+G + V
Sbjct: 180 LHIGVYAFRRSALFSYIASAPSPLSQAEDLEQLRVLEHGGSIHV 223
>sp|A1BI64|KDSB_CHLPD 3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlorobium
phaeobacteroides (strain DSM 266) GN=kdsB PE=3 SV=1
Length = 247
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 142/226 (62%), Gaps = 11/226 (4%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
+ V +IPAR SSR E K L ++ G+P+I RTW ++ + D +VVATD+++IA Q
Sbjct: 2 KAVILIPARLDSSRLEKKMLADLQGEPLIVRTWRQALKSRLADRVVVATDNDEIASVLQA 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL--QAA 166
+GA+V+MTS R GTER EA + +E DI VN+QGDEPLI PE ID ++ +
Sbjct: 62 YGAEVVMTSPHARCGTERIAEAAKSIEG--DIYVNLQGDEPLISPENIDLALEPFFTETP 119
Query: 167 PDAVFSTAVTSLKPED---AFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL 223
PD ST V L PED D N VK V+DN GYA+YFSR IPY + +++
Sbjct: 120 PDC--STLVFPLLPEDFRQLEDINTVKVVMDNAGYALYFSRSPIPYQR--QISTSTECYR 175
Query: 224 HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269
H+G+ ++ ++ L + L P+ L+L E LEQL++LENGY+++ +T
Sbjct: 176 HIGLYAFRADVLHAFASLAPSMLELAESLEQLRLLENGYRIRCVKT 221
>sp|A8ZWH0|KDSB_DESOH 3-deoxy-manno-octulosonate cytidylyltransferase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=kdsB PE=3 SV=1
Length = 248
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 4/225 (1%)
Query: 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ 108
++ IIP+R+ S+RF GKPL I G PMIQR +++ K A + + VATDD +I E +
Sbjct: 2 KIAAIIPSRYGSTRFAGKPLAPIAGIPMIQRVYDQVKQAICVTDIAVATDDRRIVEAVTR 61
Query: 109 FGADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167
FG + +MTS +CR+GT+R EA +++ DIVVNIQGD+PLI P+ ID + L + P
Sbjct: 62 FGGNALMTSAACRSGTDRAAEAAKQMGLAPEDIVVNIQGDQPLIAPQTIDETLAPLLSDP 121
Query: 168 DAVFSTAVTS-LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLG 226
D +TA + + ++ +P VK V D G+A+YFSR IP+ + + +F HLG
Sbjct: 122 DLGMTTAAFAIMDKQEITNPKDVKMVFDADGFALYFSRSPIPFARDK--DTRFDTFKHLG 179
Query: 227 IQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
I +Y FL I+ L L+ E LEQL+ LE+ +++K T +
Sbjct: 180 IYAYTRRFLDIFTQLPNGVLEEIEKLEQLRALEHSHRIKTVVTRY 224
>sp|B6ES02|KDSB_ALISL 3-deoxy-manno-octulosonate cytidylyltransferase OS=Aliivibrio
salmonicida (strain LFI1238) GN=kdsB PE=3 SV=1
Length = 249
Score = 174 bits (440), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 132/219 (60%), Gaps = 6/219 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E + K +IVVN+QGDEPLI P II V K L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIDKCGIASNEIVVNVQGDEPLIPPSIIRQVAKNLADSIAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGI 227
+ AVT + ED F+PN VK V D GYA+YFSR IP+++ G+ P L H+GI
Sbjct: 125 TLAVTIDEEEDVFNPNAVKVVTDAEGYALYFSRAAIPWDRDAFAKGEALTANPLLRHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 185 YAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHV 223
>sp|Q7MJ10|KDSB_VIBVY 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain YJ016) GN=kdsB PE=3 SV=1
Length = 251
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 10/222 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPM+Q +E++ A D +++ATDD+++A+ FG
Sbjct: 6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDA 169
V MTS + +GTER E +Q + D IVVN+QGDEPLI P II V + L A AP A
Sbjct: 65 VCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMA 124
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHL 225
A+TS E+ F+PN VK V D GYA+YFSR IP+++ G+V + + H+
Sbjct: 125 TLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDRDAFARGEVLTEHSLMRHI 182
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V+
Sbjct: 183 GIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIHVE 224
>sp|B5ETK7|KDSB_VIBFM 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain MJ11) GN=kdsB PE=3 SV=1
Length = 249
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 6/219 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGI 227
+ AVT + +D F+PN VK V D GYA+YFSR IP+++ G+ P L H+GI
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 185 YAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHV 223
>sp|Q5E0E9|KDSB_VIBF1 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=kdsB PE=3 SV=1
Length = 249
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/219 (44%), Positives = 133/219 (60%), Gaps = 6/219 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
IIPAR+ S+R GKPL +I GKPMIQ +E++ A D +++ATDD +I + FG D
Sbjct: 6 IIPARYQSTRLPGKPLADICGKPMIQWVYEQASKAGA-DRVIIATDDSRIEAVVKGFGGD 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K D IVVN+QGDEPLI P II V + L + +
Sbjct: 65 VCMTSPNHESGTERLAEVIEKCGISADEIVVNVQGDEPLIPPSIIQQVAQNLSDSVAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGI 227
+ AVT + +D F+PN VK V D GYA+YFSR IP+++ G+ P L H+GI
Sbjct: 125 TLAVTIDEEDDVFNPNAVKVVTDAEGYALYFSRASIPWDRDAFAQGETLTANPLLRHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKV 266
+Y + F+ Y P+ L+ E LEQL+VL G K+ V
Sbjct: 185 YAYRAGFINTYINWQPSVLEKIECLEQLRVLWYGEKIHV 223
>sp|Q8DAU9|KDSB_VIBVU 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio
vulnificus (strain CMCP6) GN=kdsB PE=3 SV=1
Length = 251
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 97/222 (43%), Positives = 137/222 (61%), Gaps = 10/222 (4%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ S+R GKPL +I GKPM+Q +E++ A D +++ATDD+++A+ FG
Sbjct: 6 VIPARYQSTRLPGKPLADIAGKPMVQWVYEQAIQAGAQD-VIIATDDQRVADAVAVFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQA--APDA 169
V MTS + +GTER E +Q + D IVVN+QGDEPLI P II V + L A AP A
Sbjct: 65 VCMTSPNHESGTERLAEVVQLMGIADDHIVVNVQGDEPLIPPSIIRQVAENLAASSAPMA 124
Query: 170 VFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHL 225
A+TS E+ F+PN VK V D GYA+YFSR IP+++ G+V + + H+
Sbjct: 125 TLGVAITS--EEEVFNPNAVKVVTDKEGYALYFSRATIPWDRDAFARGEVLTEHSLMRHI 182
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
GI +Y + F+ Y P+ L+ E LEQL+VL G K+ V+
Sbjct: 183 GIYAYRAGFINTYVNWQPSSLEKIECLEQLRVLWYGEKIHVE 224
>sp|A7MV12|KDSB_VIBHB 3-deoxy-manno-octulosonate cytidylyltransferase OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=kdsB PE=3 SV=1
Length = 252
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 133/220 (60%), Gaps = 6/220 (2%)
Query: 53 IIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD 112
+IPAR+ASSR GKPL +I GKPMIQ +E++ A D +++ATDD++++ +QFG
Sbjct: 6 VIPARYASSRLPGKPLADIGGKPMIQWVYEQALQAGAED-VIIATDDKRVSAAAEQFGGK 64
Query: 113 VIMTSESCRNGTERCNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 171
V MTS + +GTER E ++K+ D IVVN+QGDEPLI P II V L +
Sbjct: 65 VCMTSPNHESGTERLAEVVEKMAIPADHIVVNVQGDEPLIPPSIIRQVADNLAGCDAPMA 124
Query: 172 STAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQ----FPYLLHLGI 227
+ AV E+ F+PN VK V D GYA+YFSR IP+++ P +LH+GI
Sbjct: 125 TLAVEIESEEEVFNPNAVKVVADERGYAMYFSRATIPWDRDNFAKQDKTIANPLMLHIGI 184
Query: 228 QSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQ 267
+Y + F+ Y P+ L+ E LEQL+VL G K+ V+
Sbjct: 185 YAYRAGFINTYVNWQPSALEQIECLEQLRVLWYGEKIHVE 224
>sp|Q0HUU0|KDSB_SHESR 3-deoxy-manno-octulosonate cytidylyltransferase OS=Shewanella sp.
(strain MR-7) GN=kdsB PE=3 SV=1
Length = 245
Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/226 (42%), Positives = 135/226 (59%), Gaps = 8/226 (3%)
Query: 50 VVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF 109
V +IPAR+ SSRF GKPL I GKPMIQ +ER+ LA L ++ VATDDE+I + F
Sbjct: 3 VTLLIPARYGSSRFPGKPLAPINGKPMIQHVYERASLAKGLTNIYVATDDERIKSAVEGF 62
Query: 110 GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168
G V+MTS +GT+R N+A+ +L K D+V+N+QGD+PLI+P I+ V+ + P
Sbjct: 63 GGKVVMTSPDAASGTDRINDAINQLGLKDDDLVINLQGDQPLIDPTSIEQVISLFERHP- 121
Query: 169 AVFSTAVTS---LKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHL 225
F A + + DP VK V DN YA+YFSR IP+ + K +P HL
Sbjct: 122 GEFEMATLGYEIVNKAELDDPMHVKMVFDNDYYALYFSRARIPFGRDTK---DYPVYKHL 178
Query: 226 GIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271
G+ +Y F++ + L L+ E LEQL+ LE+G+K+KV + F
Sbjct: 179 GVYAYTRRFVQAFAALPLGRLEDLEKLEQLRALEHGHKIKVAISAF 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,144,738
Number of Sequences: 539616
Number of extensions: 4434073
Number of successful extensions: 14687
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 12962
Number of HSP's gapped (non-prelim): 482
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)