Query 023786
Match_columns 277
No_of_seqs 227 out of 2036
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 06:38:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02917 CMP-KDO synthetase 100.0 9.9E-47 2.1E-51 342.3 28.0 267 5-271 3-269 (293)
2 COG1212 KdsB CMP-2-keto-3-deox 100.0 4.9E-40 1.1E-44 279.8 20.0 220 47-270 1-222 (247)
3 TIGR00466 kdsB 3-deoxy-D-manno 100.0 3.3E-36 7.1E-41 266.1 24.2 219 52-272 2-226 (238)
4 PRK05450 3-deoxy-manno-octulos 100.0 3.1E-30 6.7E-35 227.8 25.1 222 48-271 1-225 (245)
5 cd02517 CMP-KDO-Synthetase CMP 100.0 1.7E-28 3.6E-33 216.0 25.5 221 49-271 1-222 (239)
6 PRK13368 3-deoxy-manno-octulos 100.0 1.8E-28 3.8E-33 215.7 24.3 215 48-269 1-218 (238)
7 PF02348 CTP_transf_3: Cytidyl 99.9 1.8E-26 3.8E-31 200.1 15.0 213 51-264 1-217 (217)
8 TIGR03584 PseF pseudaminic aci 99.9 7.7E-24 1.7E-28 185.3 21.0 198 51-260 1-218 (222)
9 COG1083 NeuA CMP-N-acetylneura 99.9 2.4E-24 5.3E-29 182.5 14.8 204 47-262 1-222 (228)
10 COG1207 GlmU N-acetylglucosami 99.9 5E-23 1.1E-27 189.9 19.2 207 48-270 1-221 (460)
11 cd02513 CMP-NeuAc_Synthase CMP 99.9 2.4E-22 5.2E-27 174.5 20.3 199 49-260 1-221 (223)
12 COG1209 RfbA dTDP-glucose pyro 99.9 3.7E-22 8.1E-27 175.2 19.8 196 52-270 3-216 (286)
13 TIGR01105 galF UTP-glucose-1-p 99.9 1.3E-20 2.9E-25 171.5 23.4 207 49-271 3-258 (297)
14 cd02540 GT2_GlmU_N_bac N-termi 99.9 6.2E-21 1.3E-25 166.2 19.4 204 52-270 1-215 (229)
15 PRK14358 glmU bifunctional N-a 99.9 7.2E-21 1.6E-25 184.1 21.5 207 48-270 6-223 (481)
16 COG1208 GCD1 Nucleoside-diphos 99.9 7.5E-20 1.6E-24 170.7 20.6 200 51-271 3-216 (358)
17 PRK13385 2-C-methyl-D-erythrit 99.8 2.6E-20 5.6E-25 163.5 15.3 196 48-271 1-205 (230)
18 PRK14352 glmU bifunctional N-a 99.8 9.9E-20 2.1E-24 176.2 20.4 210 49-272 4-226 (482)
19 PRK15480 glucose-1-phosphate t 99.8 2E-19 4.3E-24 163.5 21.0 194 49-263 3-213 (292)
20 cd02538 G1P_TT_short G1P_TT_sh 99.8 4.8E-19 1E-23 156.1 22.3 171 51-240 2-186 (240)
21 PRK14356 glmU bifunctional N-a 99.8 1.3E-19 2.8E-24 173.9 20.1 206 49-270 5-222 (456)
22 PRK09451 glmU bifunctional N-a 99.8 3.6E-19 7.7E-24 171.0 22.1 203 47-268 3-216 (456)
23 cd06915 NTP_transferase_WcbM_l 99.8 5.1E-19 1.1E-23 152.9 21.0 195 52-271 1-208 (223)
24 PRK10122 GalU regulator GalF; 99.8 9.7E-19 2.1E-23 159.4 23.4 207 49-271 3-258 (297)
25 KOG1322 GDP-mannose pyrophosph 99.8 1E-19 2.2E-24 163.0 16.2 197 49-268 9-222 (371)
26 TIGR01207 rmlA glucose-1-phosp 99.8 3.4E-19 7.5E-24 161.5 19.9 190 52-262 2-208 (286)
27 PF12804 NTP_transf_3: MobA-li 99.8 5.4E-20 1.2E-24 152.0 13.3 113 52-166 1-114 (160)
28 TIGR00453 ispD 2-C-methyl-D-er 99.8 1.3E-19 2.7E-24 157.3 16.0 193 52-272 2-200 (217)
29 PRK14355 glmU bifunctional N-a 99.8 4E-19 8.6E-24 170.9 20.9 209 47-271 1-222 (459)
30 PRK14353 glmU bifunctional N-a 99.8 3.8E-19 8.2E-24 170.2 20.3 209 47-270 3-222 (446)
31 TIGR01099 galU UTP-glucose-1-p 99.8 1.1E-18 2.3E-23 155.6 21.7 206 51-272 2-247 (260)
32 PF01128 IspD: 2-C-methyl-D-er 99.8 3E-20 6.5E-25 162.1 10.9 189 50-270 1-200 (221)
33 PRK00155 ispD 2-C-methyl-D-ery 99.8 6.1E-19 1.3E-23 154.2 17.2 197 47-271 1-204 (227)
34 cd06425 M1P_guanylylT_B_like_N 99.8 3E-18 6.5E-23 150.3 21.0 199 51-272 2-215 (233)
35 PRK14354 glmU bifunctional N-a 99.8 1.5E-18 3.4E-23 166.4 20.9 206 48-270 1-218 (458)
36 PRK14359 glmU bifunctional N-a 99.8 2.2E-18 4.7E-23 164.1 20.4 200 48-270 1-213 (430)
37 cd04189 G1P_TT_long G1P_TT_lon 99.8 7.4E-18 1.6E-22 147.7 21.4 200 51-272 2-216 (236)
38 COG2068 Uncharacterized MobA-r 99.8 8E-19 1.7E-23 148.7 13.9 180 48-258 4-193 (199)
39 cd02541 UGPase_prokaryotic Pro 99.8 9E-18 1.9E-22 150.2 21.5 204 51-272 2-247 (267)
40 PLN02728 2-C-methyl-D-erythrit 99.8 9.2E-19 2E-23 155.9 14.6 118 48-166 23-146 (252)
41 TIGR01173 glmU UDP-N-acetylglu 99.8 4.2E-18 9.1E-23 162.9 20.2 202 51-271 2-215 (451)
42 PRK14360 glmU bifunctional N-a 99.8 4.5E-18 9.7E-23 162.9 19.6 175 50-238 2-184 (450)
43 cd06422 NTP_transferase_like_1 99.8 1.4E-17 3E-22 144.8 20.3 167 52-240 2-182 (221)
44 COG1211 IspD 4-diphosphocytidy 99.8 5.2E-19 1.1E-23 154.2 11.3 125 47-175 2-137 (230)
45 cd06428 M1P_guanylylT_A_like_N 99.8 1E-17 2.2E-22 149.2 19.9 174 52-240 1-192 (257)
46 cd04182 GT_2_like_f GT_2_like_ 99.8 1.8E-18 3.8E-23 145.5 13.8 116 50-166 1-119 (186)
47 TIGR01208 rmlA_long glucose-1- 99.8 1.4E-17 3.1E-22 154.8 21.2 199 52-272 2-217 (353)
48 PRK13389 UTP--glucose-1-phosph 99.8 2.3E-17 5E-22 150.7 22.2 202 51-272 10-262 (302)
49 cd04181 NTP_transferase NTP_tr 99.8 2.2E-17 4.8E-22 142.2 20.4 198 52-272 1-212 (217)
50 cd02516 CDP-ME_synthetase CDP- 99.8 4E-18 8.6E-23 147.7 15.2 194 51-271 2-204 (218)
51 PRK05293 glgC glucose-1-phosph 99.8 1.6E-17 3.5E-22 156.0 19.9 205 49-271 3-239 (380)
52 cd02503 MobA MobA catalyzes th 99.8 3.2E-18 6.9E-23 144.2 13.6 107 51-163 2-109 (181)
53 PRK02726 molybdopterin-guanine 99.8 4.8E-18 1E-22 146.3 14.7 115 47-165 5-120 (200)
54 PF00483 NTP_transferase: Nucl 99.8 9.3E-18 2E-22 147.9 16.5 200 51-268 1-222 (248)
55 TIGR02623 G1P_cyt_trans glucos 99.8 3.7E-17 8.1E-22 145.7 20.3 192 52-271 2-226 (254)
56 TIGR03310 matur_ygfJ molybdenu 99.8 3.9E-18 8.3E-23 144.2 12.7 113 52-166 2-118 (188)
57 cd06426 NTP_transferase_like_2 99.8 4.1E-17 8.8E-22 141.4 19.4 194 52-272 1-206 (220)
58 PRK09382 ispDF bifunctional 2- 99.8 1E-17 2.2E-22 157.1 16.0 148 47-199 3-159 (378)
59 TIGR03202 pucB xanthine dehydr 99.8 8.6E-18 1.9E-22 143.1 13.2 115 51-166 2-124 (190)
60 PRK00317 mobA molybdopterin-gu 99.8 1.9E-17 4.1E-22 141.3 14.8 114 47-166 1-117 (193)
61 PRK00844 glgC glucose-1-phosph 99.8 9.6E-17 2.1E-21 152.3 20.9 182 47-237 3-209 (407)
62 PRK02862 glgC glucose-1-phosph 99.8 6.4E-17 1.4E-21 154.5 19.7 216 47-271 1-254 (429)
63 PRK14357 glmU bifunctional N-a 99.8 6.2E-17 1.3E-21 155.0 19.1 169 51-237 2-176 (448)
64 TIGR02665 molyb_mobA molybdopt 99.7 2E-17 4.3E-22 140.0 13.6 112 50-165 1-115 (186)
65 cd04197 eIF-2B_epsilon_N The N 99.7 5E-17 1.1E-21 141.3 15.7 178 51-235 2-217 (217)
66 PRK00725 glgC glucose-1-phosph 99.7 4.6E-16 1E-20 148.5 20.8 181 48-237 14-221 (425)
67 cd02518 GT2_SpsF SpsF is a gly 99.7 8.2E-17 1.8E-21 141.3 14.5 112 51-166 1-116 (233)
68 PLN02241 glucose-1-phosphate a 99.7 5E-16 1.1E-20 148.7 19.4 216 47-271 1-262 (436)
69 cd02524 G1P_cytidylyltransfera 99.7 9.9E-16 2.1E-20 136.2 19.3 193 52-271 1-227 (253)
70 cd04183 GT2_BcE_like GT2_BcbE_ 99.7 1.2E-15 2.7E-20 133.3 18.1 196 52-270 1-217 (231)
71 COG0746 MobA Molybdopterin-gua 99.7 2.5E-16 5.5E-21 134.7 13.1 114 48-167 3-116 (192)
72 TIGR00454 conserved hypothetic 99.7 3.8E-16 8.3E-21 132.8 14.1 111 51-165 2-116 (183)
73 COG1210 GalU UDP-glucose pyrop 99.7 4.6E-15 9.9E-20 130.8 20.8 203 50-270 5-250 (291)
74 cd02509 GDP-M1P_Guanylyltransf 99.7 9.2E-16 2E-20 138.3 16.9 178 51-236 2-203 (274)
75 TIGR02092 glgD glucose-1-phosp 99.7 5.4E-16 1.2E-20 145.1 15.7 171 50-236 3-199 (369)
76 cd02523 PC_cytidylyltransferas 99.7 1.9E-15 4.1E-20 132.0 16.6 167 52-239 1-177 (229)
77 TIGR02091 glgC glucose-1-phosp 99.7 2E-15 4.3E-20 140.8 17.1 178 52-238 1-204 (361)
78 PRK14490 putative bifunctional 99.7 5.4E-16 1.2E-20 145.4 12.8 116 43-163 168-284 (369)
79 COG2266 GTP:adenosylcobinamide 99.6 1.9E-15 4.1E-20 125.1 12.3 106 52-164 3-112 (177)
80 cd02508 ADP_Glucose_PP ADP-glu 99.6 3.4E-15 7.4E-20 128.1 13.8 117 52-172 1-142 (200)
81 KOG1460 GDP-mannose pyrophosph 99.6 1.3E-15 2.9E-20 135.0 9.6 178 48-239 1-195 (407)
82 COG1213 Predicted sugar nucleo 99.6 7.3E-15 1.6E-19 127.2 13.2 168 48-239 2-178 (239)
83 PRK00560 molybdopterin-guanine 99.6 4.6E-15 1E-19 127.4 12.0 105 48-161 7-114 (196)
84 PRK14500 putative bifunctional 99.6 8.5E-15 1.8E-19 135.9 13.5 112 49-165 160-272 (346)
85 TIGR01479 GMP_PMI mannose-1-ph 99.6 3.8E-14 8.3E-19 136.8 16.5 177 50-236 1-205 (468)
86 PRK14489 putative bifunctional 99.6 2.8E-14 6E-19 133.7 14.4 114 47-165 3-120 (366)
87 COG1861 SpsF Spore coat polysa 99.6 2.2E-14 4.8E-19 122.6 11.9 115 47-165 1-119 (241)
88 cd04198 eIF-2B_gamma_N The N-t 99.6 4.1E-14 9E-19 122.9 13.5 120 51-177 2-137 (214)
89 COG0448 GlgC ADP-glucose pyrop 99.5 4.2E-13 9.1E-18 124.1 15.6 179 48-239 4-208 (393)
90 cd02507 eIF-2B_gamma_N_like Th 99.5 2.9E-13 6.3E-18 117.8 13.0 179 51-235 2-216 (216)
91 COG4750 LicC CTP:phosphocholin 99.5 8.4E-13 1.8E-17 110.6 13.7 94 52-150 3-105 (231)
92 PRK15460 cpsB mannose-1-phosph 99.2 1.6E-10 3.4E-15 111.6 15.2 178 48-235 4-213 (478)
93 COG0836 {ManC} Mannose-1-phosp 99.2 6.3E-10 1.4E-14 100.5 14.8 180 50-238 2-210 (333)
94 KOG1462 Translation initiation 99.1 1.2E-10 2.6E-15 106.8 8.4 116 46-166 6-138 (433)
95 PRK00576 molybdopterin-guanine 99.1 1.5E-09 3.4E-14 91.4 10.7 97 65-166 4-103 (178)
96 TIGR03552 F420_cofC 2-phospho- 98.9 2.5E-08 5.5E-13 85.0 12.9 89 74-165 30-118 (195)
97 cd04180 UGPase_euk_like Eukary 98.6 2.7E-06 5.8E-11 76.6 16.5 183 50-238 1-239 (266)
98 cd04193 UDPGlcNAc_PPase UDPGlc 98.5 3.6E-06 7.7E-11 77.8 14.8 181 49-238 15-254 (323)
99 PTZ00339 UDP-N-acetylglucosami 98.3 3.6E-05 7.9E-10 74.5 16.0 180 49-238 106-349 (482)
100 KOG1461 Translation initiation 98.0 7E-05 1.5E-09 73.2 12.7 215 48-271 23-269 (673)
101 cd00897 UGPase_euk Eukaryotic 97.6 0.0029 6.3E-08 57.9 15.8 181 49-238 3-231 (300)
102 PLN02435 probable UDP-N-acetyl 97.5 0.0012 2.6E-08 64.1 12.2 183 48-239 115-363 (493)
103 cd06424 UGGPase UGGPase cataly 97.5 0.0023 5.1E-08 58.8 12.8 179 51-237 2-249 (315)
104 COG1920 Predicted nucleotidylt 97.3 0.0021 4.5E-08 54.6 9.1 105 52-170 3-117 (210)
105 PLN02474 UTP--glucose-1-phosph 97.3 0.015 3.2E-07 56.3 16.1 183 48-238 78-307 (469)
106 PF01983 CofC: Guanylyl transf 97.0 0.00098 2.1E-08 58.2 4.5 105 51-164 2-114 (217)
107 PF01704 UDPGP: UTP--glucose-1 96.7 0.043 9.4E-07 52.6 14.0 181 49-239 56-287 (420)
108 PLN02830 UDP-sugar pyrophospho 96.7 0.02 4.3E-07 57.3 11.9 127 49-177 128-311 (615)
109 cd00761 Glyco_tranf_GTA_type G 96.7 0.037 8E-07 42.8 11.1 91 74-169 9-108 (156)
110 PRK11498 bcsA cellulose syntha 96.6 0.039 8.4E-07 57.3 13.6 89 76-168 275-369 (852)
111 cd04195 GT2_AmsE_like GT2_AmsE 96.6 0.058 1.3E-06 45.1 12.5 93 76-172 14-114 (201)
112 cd02511 Beta4Glucosyltransfera 96.5 0.074 1.6E-06 46.1 13.0 89 72-168 10-101 (229)
113 cd06421 CESA_CelA_like CESA_Ce 96.4 0.065 1.4E-06 45.8 12.0 90 75-168 15-114 (234)
114 cd06438 EpsO_like EpsO protein 96.4 0.11 2.4E-06 43.1 12.9 97 72-169 7-112 (183)
115 cd06433 GT_2_WfgS_like WfgS an 96.2 0.25 5.5E-06 40.6 13.9 94 72-169 8-106 (202)
116 cd06439 CESA_like_1 CESA_like_ 96.0 0.24 5.1E-06 43.0 13.5 101 47-165 28-136 (251)
117 PF00535 Glycos_transf_2: Glyc 95.8 0.053 1.1E-06 43.0 8.1 91 72-166 8-106 (169)
118 TIGR01556 rhamnosyltran L-rham 95.8 1.1 2.5E-05 39.7 17.3 88 75-166 8-101 (281)
119 COG1216 Predicted glycosyltran 95.8 0.95 2.1E-05 41.1 17.0 192 70-268 11-213 (305)
120 TIGR03030 CelA cellulose synth 95.6 0.21 4.6E-06 51.1 13.2 90 76-168 146-258 (713)
121 PRK10714 undecaprenyl phosphat 95.6 0.36 7.7E-06 44.6 13.6 110 46-168 4-120 (325)
122 COG1215 Glycosyltransferases, 95.5 0.55 1.2E-05 44.4 14.9 193 48-268 54-258 (439)
123 cd02510 pp-GalNAc-T pp-GalNAc- 95.3 2 4.4E-05 38.6 18.9 90 75-169 12-114 (299)
124 PRK11204 N-glycosyltransferase 95.1 0.88 1.9E-05 43.1 14.9 90 75-168 67-164 (420)
125 TIGR03469 HonB hopene-associat 95.1 1 2.2E-05 42.5 15.0 105 47-166 39-161 (384)
126 cd06435 CESA_NdvC_like NdvC_li 94.9 0.6 1.3E-05 40.0 12.2 88 76-165 13-111 (236)
127 cd02526 GT2_RfbF_like RfbF is 94.8 2.3 4.9E-05 36.3 16.8 87 70-160 5-97 (237)
128 cd04184 GT2_RfbC_Mx_like Myxoc 94.8 2 4.3E-05 35.6 15.3 90 75-169 15-114 (202)
129 COG4284 UDP-glucose pyrophosph 94.8 0.03 6.5E-07 53.8 3.8 182 48-238 104-337 (472)
130 cd06423 CESA_like CESA_like is 94.7 0.68 1.5E-05 36.4 11.3 95 72-169 7-109 (180)
131 TIGR03111 glyc2_xrt_Gpos1 puta 94.7 1.2 2.5E-05 42.9 14.5 103 48-168 49-161 (439)
132 PF09837 DUF2064: Uncharacteri 94.6 0.12 2.5E-06 41.0 6.3 89 80-172 1-93 (122)
133 cd04186 GT_2_like_c Subfamily 94.6 0.66 1.4E-05 36.8 11.0 93 72-168 7-104 (166)
134 cd06434 GT2_HAS Hyaluronan syn 94.5 0.54 1.2E-05 40.2 10.8 84 75-164 14-103 (235)
135 PRK13915 putative glucosyl-3-p 94.1 0.74 1.6E-05 42.2 11.3 111 46-172 29-150 (306)
136 cd06442 DPM1_like DPM1_like re 93.9 1.5 3.2E-05 37.0 12.3 89 72-165 7-105 (224)
137 PLN02726 dolichyl-phosphate be 93.7 2.4 5.2E-05 36.8 13.5 38 125-165 83-120 (243)
138 cd04179 DPM_DPG-synthase_like 93.7 1.9 4.1E-05 35.1 12.2 87 75-165 10-106 (185)
139 cd04192 GT_2_like_e Subfamily 93.7 1.3 2.8E-05 37.3 11.5 91 73-166 8-110 (229)
140 TIGR03472 HpnI hopanoid biosyn 93.4 3.4 7.3E-05 38.7 14.7 100 48-165 41-153 (373)
141 cd04191 Glucan_BSP_ModH Glucan 93.3 2 4.4E-05 38.2 12.5 100 68-168 4-125 (254)
142 cd06427 CESA_like_2 CESA_like_ 93.2 2.3 5.1E-05 36.8 12.6 89 75-166 14-112 (241)
143 cd04185 GT_2_like_b Subfamily 93.1 2 4.4E-05 35.8 11.6 92 71-164 6-105 (202)
144 cd04188 DPG_synthase DPG_synth 93.0 1.7 3.7E-05 36.7 11.2 90 72-165 7-109 (211)
145 cd02525 Succinoglycan_BP_ExoA 92.9 1.8 3.9E-05 37.0 11.3 88 74-166 12-109 (249)
146 cd04187 DPM1_like_bac Bacteria 92.9 3.2 6.9E-05 33.9 12.3 44 122-168 67-110 (181)
147 PF10111 Glyco_tranf_2_2: Glyc 92.6 2.9 6.2E-05 37.6 12.6 72 101-175 51-128 (281)
148 cd04196 GT_2_like_d Subfamily 92.6 3 6.5E-05 34.6 12.0 92 72-166 8-107 (214)
149 PRK05454 glucosyltransferase M 92.5 2.3 5E-05 43.5 12.9 91 77-168 144-250 (691)
150 cd06913 beta3GnTL1_like Beta 1 92.2 3.2 7E-05 35.1 11.9 98 72-172 7-118 (219)
151 PRK14583 hmsR N-glycosyltransf 91.9 3.1 6.8E-05 39.9 12.6 90 75-168 88-185 (444)
152 PF13704 Glyco_tranf_2_4: Glyc 91.2 1.2 2.7E-05 32.9 7.2 78 74-152 4-86 (97)
153 cd06437 CESA_CaSu_A2 Cellulose 91.1 3.3 7.1E-05 35.5 10.8 87 75-164 14-113 (232)
154 cd02520 Glucosylceramide_synth 90.6 5.7 0.00012 33.1 11.7 87 75-165 14-113 (196)
155 PF13641 Glyco_tranf_2_3: Glyc 90.4 5.5 0.00012 33.7 11.5 176 75-268 14-203 (228)
156 cd06436 GlcNAc-1-P_transferase 90.2 5.5 0.00012 33.2 11.2 92 72-164 7-115 (191)
157 cd02522 GT_2_like_a GT_2_like_ 89.8 7.5 0.00016 32.6 11.8 87 74-166 11-100 (221)
158 PRK10073 putative glycosyl tra 88.8 7.3 0.00016 35.9 11.7 87 74-166 18-113 (328)
159 KOG2388 UDP-N-acetylglucosamin 88.7 0.28 6E-06 47.2 2.2 77 4-86 58-140 (477)
160 PTZ00260 dolichyl-phosphate be 88.6 5.8 0.00013 36.7 10.9 51 111-165 139-189 (333)
161 PRK10018 putative glycosyl tra 86.7 12 0.00027 33.7 11.6 88 73-165 16-112 (279)
162 KOG2978 Dolichol-phosphate man 85.6 11 0.00023 32.5 9.7 90 73-165 17-115 (238)
163 cd02514 GT13_GLCNAC-TI GT13_GL 78.6 43 0.00093 31.2 12.0 102 70-173 7-134 (334)
164 PRK10063 putative glycosyl tra 78.5 31 0.00067 30.3 10.7 81 72-157 11-101 (248)
165 COG0463 WcaA Glycosyltransfera 77.9 31 0.00067 26.9 10.4 98 47-162 2-106 (291)
166 COG2943 MdoH Membrane glycosyl 77.1 17 0.00036 36.1 8.9 92 77-169 164-271 (736)
167 cd04190 Chitin_synth_C C-termi 76.8 19 0.00041 31.3 8.8 31 137-168 73-103 (244)
168 cd06420 GT2_Chondriotin_Pol_N 73.7 45 0.00097 26.7 16.9 88 73-163 8-104 (182)
169 COG3222 Uncharacterized protei 71.5 46 0.001 28.4 9.2 96 74-172 37-137 (211)
170 PRK13010 purU formyltetrahydro 71.2 60 0.0013 29.6 10.8 90 52-158 96-189 (289)
171 PRK05647 purN phosphoribosylgl 65.7 63 0.0014 27.7 9.3 92 47-157 1-99 (200)
172 PRK14716 bacteriophage N4 adso 65.2 60 0.0013 32.1 10.1 90 72-162 76-182 (504)
173 PF09258 Glyco_transf_64: Glyc 61.0 20 0.00043 31.8 5.5 139 75-240 13-154 (247)
174 TIGR00655 PurU formyltetrahydr 59.4 1.1E+02 0.0025 27.6 10.2 89 52-157 87-179 (280)
175 COG3473 Maleate cis-trans isom 57.2 1.2E+02 0.0026 26.6 9.2 82 78-162 107-202 (238)
176 PRK13011 formyltetrahydrofolat 53.9 1.6E+02 0.0036 26.7 10.3 89 52-157 92-184 (286)
177 PRK11234 nfrB bacteriophage N4 53.8 1.8E+02 0.0039 30.2 11.6 91 72-165 73-181 (727)
178 PF13506 Glyco_transf_21: Glyc 53.4 44 0.00095 27.8 6.1 126 126-268 21-147 (175)
179 TIGR00334 5S_RNA_mat_M5 ribonu 48.6 83 0.0018 26.5 6.9 69 90-163 2-70 (174)
180 PF07302 AroM: AroM protein; 46.9 1.8E+02 0.004 25.4 9.0 105 51-163 90-200 (221)
181 PF13632 Glyco_trans_2_3: Glyc 46.6 1.1E+02 0.0023 25.0 7.5 24 140-164 1-24 (193)
182 TIGR02990 ectoine_eutA ectoine 43.7 2.3E+02 0.005 25.0 10.0 85 76-163 107-205 (239)
183 COG0079 HisC Histidinol-phosph 40.7 2.8E+02 0.006 26.0 9.9 86 75-165 86-176 (356)
184 COG0421 SpeE Spermidine syntha 40.6 1.1E+02 0.0023 27.9 6.9 11 51-61 79-89 (282)
185 PF13712 Glyco_tranf_2_5: Glyc 40.0 1.3E+02 0.0029 25.9 7.2 45 122-168 41-85 (217)
186 KOG0734 AAA+-type ATPase conta 36.7 91 0.002 31.3 6.0 97 61-160 330-456 (752)
187 PRK00652 lpxK tetraacyldisacch 36.3 1.3E+02 0.0028 27.9 6.9 34 42-87 43-78 (325)
188 PRK06027 purU formyltetrahydro 35.5 3.4E+02 0.0073 24.6 11.0 91 51-158 91-185 (286)
189 PF10087 DUF2325: Uncharacteri 35.4 1.3E+02 0.0029 22.1 5.7 41 90-133 49-95 (97)
190 PF14097 SpoVAE: Stage V sporu 34.1 2.9E+02 0.0062 23.3 10.7 104 92-201 1-115 (180)
191 PF08832 SRC-1: Steroid recept 33.4 26 0.00056 25.4 1.4 27 2-28 40-66 (78)
192 PRK15489 nfrB bacteriophage N4 29.6 6.4E+02 0.014 26.1 11.1 94 72-168 81-192 (703)
193 KOG4096 Uncharacterized conser 29.0 38 0.00082 24.2 1.6 27 12-38 3-29 (75)
194 PRK13587 1-(5-phosphoribosyl)- 28.5 4E+02 0.0086 23.2 8.7 101 55-164 10-123 (234)
195 PF05991 NYN_YacP: YacP-like N 27.0 1.3E+02 0.0029 24.8 4.9 38 76-115 82-119 (166)
196 TIGR03065 srtB_sig_QVPTGV sort 26.8 23 0.0005 20.7 0.1 13 32-44 19-31 (32)
197 PF04028 DUF374: Domain of unk 26.4 2.4E+02 0.0053 20.1 6.1 47 100-149 23-69 (74)
198 PF02529 PetG: Cytochrome B6-F 26.4 17 0.00036 22.4 -0.5 29 21-49 6-36 (37)
199 PRK13505 formate--tetrahydrofo 24.7 4.1E+02 0.009 26.6 8.4 120 40-163 314-456 (557)
200 PF13684 Dak1_2: Dihydroxyacet 24.0 2.6E+02 0.0057 25.7 6.6 55 92-148 98-153 (313)
201 TIGR01167 LPXTG_anchor LPXTG-m 23.4 63 0.0014 18.8 1.7 13 32-44 21-33 (34)
202 PRK13412 fkp bifunctional fuco 21.9 1.4E+02 0.0031 32.0 4.9 33 51-83 94-137 (974)
203 PLN02331 phosphoribosylglycina 21.4 5.3E+02 0.011 22.2 10.3 89 52-157 2-97 (207)
204 COG0381 WecB UDP-N-acetylgluco 20.5 5.7E+02 0.012 24.4 8.1 83 77-164 19-114 (383)
205 TIGR00639 PurN phosphoribosylg 20.5 5.2E+02 0.011 21.8 10.6 89 52-157 3-98 (190)
No 1
>PLN02917 CMP-KDO synthetase
Probab=100.00 E-value=9.9e-47 Score=342.32 Aligned_cols=267 Identities=90% Similarity=1.333 Sum_probs=231.8
Q ss_pred CCCCCCCCCCCchhHHHHHHhhccchhhhccceecccCCCCCCCceEEEEecCCCCccccccccccccccchHHHHHHHH
Q 023786 5 SICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERS 84 (277)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l 84 (277)
+..+.|.++++||+||+|||+++++++.+||+-+|+.|.++..|++.+||||||.|+||++|+|++++|+|||+|+++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a 82 (293)
T PLN02917 3 SSSSSSSSSSSTKSWIVHGIVAGAAIAAAIGAGAYLRRSRKFRSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERA 82 (293)
T ss_pred cccCCccccccchhHHhhhhcccccceeeccCchhhhhccccCCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHH
Confidence 34456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 85 KLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 85 ~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
.+++.++.|+|+++++++.+++.+++++++.+++..++|++++..|++.++.+.|.+++++||+||+++++++++++.+.
T Consensus 83 ~~~~~~~~VVV~~~~e~I~~~~~~~~v~vi~~~~~~~~GT~~~~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~ 162 (293)
T PLN02917 83 KLATTLDHIVVATDDERIAECCRGFGADVIMTSESCRNGTERCNEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 162 (293)
T ss_pred HcCCCCCEEEEECChHHHHHHHHHcCCEEEeCCcccCCchHHHHHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHH
Confidence 98766788888888889988888788888887777788999988888888544689999999999999999999999886
Q ss_pred cCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC
Q 023786 165 AAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT 244 (277)
Q Consensus 165 ~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s 244 (277)
++.++++++.+..++.++..++++++++.+.+|+++||+++++|+.++....+....+.|+|+|+|+.+.|..+..++++
T Consensus 163 ~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~ 242 (293)
T PLN02917 163 AAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPT 242 (293)
T ss_pred hcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCC
Confidence 65566666655555545567888888888989999999999888776643345566899999999999999988888889
Q ss_pred CCccccChHHHHHHHcCCeeEEEEeee
Q 023786 245 PLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 245 ~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+.+..+.+++++++++|+++.++.++.
T Consensus 243 n~e~e~yLtdl~~le~G~~i~~~~~~~ 269 (293)
T PLN02917 243 PLQLEEDLEQLKVLENGYKMKVIKVDH 269 (293)
T ss_pred cccchhccHHHHHHhCCCceEEEEeCC
Confidence 999999999999999999998887653
No 2
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.9e-40 Score=279.76 Aligned_cols=220 Identities=48% Similarity=0.786 Sum_probs=201.1
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHH
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTER 126 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~ 126 (277)
+|+..+||||+-.||||++|||..++|+|||.|+.+++.++ +.++|+|.|++++|.+.+..+|.++++++.+++.|++|
T Consensus 1 ~~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s-~~~rvvVATDde~I~~av~~~G~~avmT~~~h~SGTdR 79 (247)
T COG1212 1 TMKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS-GADRVVVATDDERIAEAVQAFGGEAVMTSKDHQSGTDR 79 (247)
T ss_pred CCceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCEEEecCCCCCCccHH
Confidence 47889999999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred HHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeec-CCCCCCCCCceEEEECCCceEEeeec
Q 023786 127 CNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSR 204 (277)
Q Consensus 127 i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~-~~~~~~d~~~~~v~~~~~g~~~~f~~ 204 (277)
+..+++.+. .+.+.++.++||.||+.++.|+++++.+.++ ++.+++++.++ ++++.+|||.+|++.|.+|+.+||||
T Consensus 80 ~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~-~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSR 158 (247)
T COG1212 80 LAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENS-NADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSR 158 (247)
T ss_pred HHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhC-CcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEc
Confidence 999998884 3567899999999999999999999999876 66777777776 45788999999999999999999999
Q ss_pred CCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
.++|+.++. .. ..+++.|+|+|.|++.+|+.|..++++.+|++|.|||||.+|+|.++++..+.
T Consensus 159 s~iP~~rd~-~~-~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~Le~G~kI~v~i~~ 222 (247)
T COG1212 159 APIPYGRDN-FG-GTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRVLENGEKIHVEIVK 222 (247)
T ss_pred CCCCCcccc-cC-CcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHHHHcCCeeEEEEec
Confidence 999998653 11 14789999999999999999999999999999999999999999999988765
No 3
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=100.00 E-value=3.3e-36 Score=266.08 Aligned_cols=219 Identities=43% Similarity=0.675 Sum_probs=184.6
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHHH
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEAL 131 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al 131 (277)
+||||||.|+||++|+|++++|+|||+|+++++.+. .+++|+|+++++++.+.++++|++++.+.....+|++++..++
T Consensus 2 ~iIpA~g~s~R~~~K~L~~l~GkPli~~~le~~~~~-~~d~VvVvt~~~~i~~~~~~~g~~~v~~~~~~~~Gt~r~~~~~ 80 (238)
T TIGR00466 2 VIIPARLASSRLPGKPLEDIFGKPMIVHVAENANES-GADRCIVATDDESVAQTCQKFGIEVCMTSKHHNSGTERLAEVV 80 (238)
T ss_pred EEEecCCCCCCCCCCeecccCCcCHHHHHHHHHHhC-CCCeEEEEeCHHHHHHHHHHcCCEEEEeCCCCCChhHHHHHHH
Confidence 799999999999999999999999999999999887 4999999999888888888889888776666778998888777
Q ss_pred HHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeec-CCCCCCCCCceEEEECCCceEEeeecCCcCC
Q 023786 132 QKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPY 209 (277)
Q Consensus 132 ~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~-~~~~~~d~~~~~v~~~~~g~~~~f~~~~~~~ 209 (277)
+.+. .+.|++++++||+||+++++|+++++.+.+. ++.+++++.++ ++++..||+.++++.+.+|+.+||++..+|+
T Consensus 81 ~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~-~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~ 159 (238)
T TIGR00466 81 EKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATK-NVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPF 159 (238)
T ss_pred HHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcC-CCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCC
Confidence 6552 2468999999999999999999999988543 33455555665 4467789999998888899999999998877
Q ss_pred CCCCCC---C-CCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 210 NKSGKV---N-PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 210 ~~~~~~---~-~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
.++... + |...++.|.|+|+|++++|+.|..++++.+|.+|.+|+||++|+|++++++.++..
T Consensus 160 ~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leqlr~le~g~~i~~~~~~~~ 226 (238)
T TIGR00466 160 DRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLRVLYYGEKIHVKIAQEV 226 (238)
T ss_pred CCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHHhhhhcCCceEEEEeCCC
Confidence 654321 1 11237899999999999999999999999999999999999999999999887543
No 4
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.98 E-value=3.1e-30 Score=227.81 Aligned_cols=222 Identities=48% Similarity=0.761 Sum_probs=173.2
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
|++.+||||||+|+||++|+|++++|+|||+|+++++.++ ++++|+|+++++.+.+++.+++++++..++...+|+.++
T Consensus 1 m~~~~iIlA~g~S~R~~~K~Ll~i~Gkpll~~~l~~l~~~-~i~~ivvv~~~~~i~~~~~~~~~~v~~~~~~~~~gt~~~ 79 (245)
T PRK05450 1 MKFLIIIPARYASTRLPGKPLADIGGKPMIVRVYERASKA-GADRVVVATDDERIADAVEAFGGEVVMTSPDHPSGTDRI 79 (245)
T ss_pred CceEEEEecCCCCCCCCCCcccccCCcCHHHHHHHHHHhc-CCCeEEEECCcHHHHHHHHHcCCEEEECCCcCCCchHHH
Confidence 7899999999999999999999999999999999999988 799999999988888887778888877656666777777
Q ss_pred HHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeec-CCCCCCCCCceEEEECCCceEEeeecC
Q 023786 128 NEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (277)
Q Consensus 128 ~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~-~~~~~~d~~~~~v~~~~~g~~~~f~~~ 205 (277)
..++..+. .+.+.+++++||+||+++++++++++.+..+ ++.+++.+.+. +..+..+|+.++++.+.+|++++|.++
T Consensus 80 ~~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~ 158 (245)
T PRK05450 80 AEAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP-EADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRA 158 (245)
T ss_pred HHHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCC
Confidence 66666552 2357899999999999999999999988653 22233333333 223446788888888999999999999
Q ss_pred CcCCCCCCCCC-CCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 206 LIPYNKSGKVN-PQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 206 ~~~~~~~~~~~-~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+++...+.... +..+.++|+|+|+|+++.++.+.......++..+.+..+++++.|++++.+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 225 (245)
T PRK05450 159 PIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLEQLRALENGYRIHVVVVEE 225 (245)
T ss_pred CCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHHHHHHHHCCCceEEEEeCC
Confidence 87654322111 1346899999999999999988765555666666655556789999999987664
No 5
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.97 E-value=1.7e-28 Score=215.96 Aligned_cols=221 Identities=52% Similarity=0.863 Sum_probs=166.7
Q ss_pred ceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHH
Q 023786 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCN 128 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~ 128 (277)
++.+||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++.+.+++.+++++++++++...+|+.++.
T Consensus 1 ~~~~iIlA~g~s~R~~~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~~~i~~~~~~~~~~~~~~~~~~~~gt~~~~ 80 (239)
T cd02517 1 KVIVVIPARYASSRLPGKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDDERIADAVESFGGKVVMTSPDHPSGTDRIA 80 (239)
T ss_pred CEEEEEecCCCCCCCCCCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHcCCEEEEcCcccCchhHHHH
Confidence 35799999999999999999999999999999999998756999999999888888887788888776655567777777
Q ss_pred HHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecC-CCCCCCCCceEEEECCCceEEeeecCCc
Q 023786 129 EALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (277)
Q Consensus 129 ~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~-~~~~~d~~~~~v~~~~~g~~~~f~~~~~ 207 (277)
.+++.+....|.+++++||+||+++++++.+++.+.++.++.+++.+.+.. +....+++.++++.+.+|.+..|++++.
T Consensus 81 ~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~ 160 (239)
T cd02517 81 EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVVLDKDGYALYFSRSPI 160 (239)
T ss_pred HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEEECCCCCEEEecCCCC
Confidence 787777422488999999999999999999998886532344454444431 1111245567788888899999987665
Q ss_pred CCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 208 PYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+..+++ .+..+.++|+|+|+|+++.++.+.......++..|.++.++++++|.+++++..+.
T Consensus 161 ~~~~~~--~~~~~~~~~~Giy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~ 222 (239)
T cd02517 161 PYPRDS--SEDFPYYKHIGIYAYRRDFLLRFAALPPSPLEQIESLEQLRALENGYKIKVVETDH 222 (239)
T ss_pred CCCCCC--CCCCceeEEEEEEEECHHHHHHHHhCCCchhhhhhhHHHHHHHHCCCceEEEEeCC
Confidence 443321 12235789999999999999987654334454445445446678999898887654
No 6
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.97 E-value=1.8e-28 Score=215.67 Aligned_cols=215 Identities=42% Similarity=0.704 Sum_probs=163.2
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
|++.|||||||+|+||++|+|++++|+|||+|+++++.+++++++|+|+++++++.++++.++++++.+++...+|++++
T Consensus 1 m~~~aiIlA~g~s~R~~~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~~~i~~~~~~~~~~v~~~~~~~~~g~~~~ 80 (238)
T PRK13368 1 MKVVVVIPARYGSSRLPGKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDDQRIEDAVEAFGGKVVMTSDDHLSGTDRL 80 (238)
T ss_pred CcEEEEEecCCCCCCCCCCccCccCCcCHHHHHHHHHHhcCCCCeEEEECChHHHHHHHHHcCCeEEecCccCCCccHHH
Confidence 57899999999999999999999999999999999999886799999999988888888888888887776777888888
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCC-CCCCCCCceEEEECCCceEEeeecCC
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGL 206 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~-~~~~d~~~~~v~~~~~g~~~~f~~~~ 206 (277)
..+++.+ +.|.+++++||+||+++++++++++.+.++..+.+++.+.+... ....+|...+++.+++|++..|.+++
T Consensus 81 ~~a~~~~--~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~v~~~~~~~ 158 (238)
T PRK13368 81 AEVMLKI--EADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKVVVDKNGDALYFSRSP 158 (238)
T ss_pred HHHHHhC--CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEEEECCCCCEEEeeCCC
Confidence 8888876 35889999999999999999999998865433333333333211 11234766666666778888887543
Q ss_pred cCCCCCCCCCCCC--CceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEe
Q 023786 207 IPYNKSGKVNPQF--PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQT 269 (277)
Q Consensus 207 ~~~~~~~~~~~~~--~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~ 269 (277)
.+.. +|+. ..+.|+|+|+|++++|+.+........+.++..+.+++++.|.+++.+..
T Consensus 159 ~~~~-----~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~ 218 (238)
T PRK13368 159 IPSR-----RDGESARYLKHVGIYAFRRDVLQQFSQLPETPLEQIESLEQLRALEHGEKIRMVEV 218 (238)
T ss_pred CCCC-----CCCCCCceeEEEEEEEeCHHHHHHHHcCCCChhhhhhhHHHHHHHHCCCceEEEEe
Confidence 2221 2222 45899999999999999875543344444444345567788888888774
No 7
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=99.94 E-value=1.8e-26 Score=200.10 Aligned_cols=213 Identities=36% Similarity=0.617 Sum_probs=166.1
Q ss_pred EEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHH
Q 023786 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (277)
Q Consensus 51 ~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~a 130 (277)
.|||||+|+|+|+|+|++++++|+|||+|+++++++++.+++|+|+|+++++.++++++|+.++.++++...++++...+
T Consensus 1 iaiIpAR~gS~rlp~Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g~~v~~~~~~~~~~~~r~~~~ 80 (217)
T PF02348_consen 1 IAIIPARGGSKRLPGKNLKPLGGKPLIEYVIERAKQSKLIDEIVVATDDEEIDDIAEEYGAKVIFRRGSLADDTDRFIEA 80 (217)
T ss_dssp EEEEEE-SSSSSSTTGGGSEETTEEHHHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHTTSEEEE--TTSSSHHHHHHHH
T ss_pred CEEEecCCCCCCCCcchhhHhCCccHHHHHHHHHHhCCCCCeEEEeCCCHHHHHHHHHcCCeeEEcChhhcCCcccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999998888888899888877
Q ss_pred HHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCC-CcEEEEEeeec-CCCCCCCCCceEEEECCCceEEeeecCCc
Q 023786 131 LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAP-DAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLI 207 (277)
Q Consensus 131 l~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~-~~~v~~~~~~~-~~~~~~d~~~~~v~~~~~g~~~~f~~~~~ 207 (277)
+..... +.+.++.++||.||+++.+++++++.+.+.. +.... ..... ...+..+++.++.+.+.++...++++...
T Consensus 81 ~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (217)
T PF02348_consen 81 IKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANEDYISN-LVDPVGSSVEIFNFNPLKVLFDDDGLELYFSEHVI 159 (217)
T ss_dssp HHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTSSEEE-EEEEECSHHHHTSTTSTEEEECTTSBEEEEESSES
T ss_pred HHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchhhhcc-ccccccchhhcccccceEEEeccccchhhcccCCC
Confidence 777632 2449999999999999999999999987642 32222 22222 12345677778888888888999999887
Q ss_pred CCCCCCCCCCCCCceEEEEEEeecHH-HHhhccCCCCCCCccccChHHHHHHHcCCee
Q 023786 208 PYNKSGKVNPQFPYLLHLGIQSYDSN-FLKIYPGLHPTPLQLEEDLEQLKVLENGYKM 264 (277)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~Giy~~~~~-~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v 264 (277)
++.++........+..+.++|.|+.. .+..+....++.++..+.+++++++++|.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~d~e~~e~i~~~~~~~~~~~i 217 (217)
T PF02348_consen 160 PYIRRNPEEFKYFYIRQVGIYAFRKEMFLERFTIDTPEDLELAEKIEQLRFFENGKKI 217 (217)
T ss_dssp SECHHHHCSSSSTEEEEEEEEEEEHHHHHHHHHHSHHHHHHHHHTHTTHHHHHTT--E
T ss_pred cccccccccccccccccccccccccccccccccCCCcchHHHHHHHHHHHHHHcCCCC
Confidence 77543111000136789999999997 7777777777778888999999999999875
No 8
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.92 E-value=7.7e-24 Score=185.30 Aligned_cols=198 Identities=26% Similarity=0.304 Sum_probs=147.7
Q ss_pred EEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEe-cCCcC----CCcHH
Q 023786 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIM-TSESC----RNGTE 125 (277)
Q Consensus 51 ~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~-~~~~~----~~g~~ 125 (277)
.|||||+|+|+||++|++++++|+|||+|+++++.+++.+++|+|+|+++++.++++++|+.+++ ++.+. .+...
T Consensus 1 ~aiIpArG~Skr~~~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~~~i~~~a~~~g~~v~~~r~~~l~~d~~~~~~ 80 (222)
T TIGR03584 1 IAIIPARGGSKRIPRKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDDEEIAEVAKSYGASVPFLRPKELADDFTGTAP 80 (222)
T ss_pred CEEEccCCCCCCCCCccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHcCCEeEEeChHHHcCCCCCchH
Confidence 38999999999999999999999999999999999988899999999999999999889988753 44432 23346
Q ss_pred HHHHHHHHcc--cCCCEEEEEcCCcccCCHHHHHHHHHHHHcC-CCcEEEEEeeecCCCCCCCCCceEEEECCCceEEee
Q 023786 126 RCNEALQKLE--KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (277)
Q Consensus 126 ~i~~al~~~~--~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~-~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f 202 (277)
++.++++.++ .+.|.+++++||+||+++++|+++++.+.++ +++++++. +.. .+|.... ..+++|....+
T Consensus 81 si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~--~~~----~~~~~~~-~~~~~g~~~~~ 153 (222)
T TIGR03584 81 VVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVT--SFA----FPIQRAF-KLKENGGVEMF 153 (222)
T ss_pred HHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEee--ccC----CChHHhe-EECCCCcEEec
Confidence 7889998774 2468999999999999999999999998753 57777753 321 1232221 33466777655
Q ss_pred ecCCcCCCCCCCCCCCCC--ceEEEEEEeecHHHHhhcc----------CCCCCCCccccChHHHHHHHc
Q 023786 203 SRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYP----------GLHPTPLQLEEDLEQLKVLEN 260 (277)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~--~~~~~Giy~~~~~~l~~~~----------~~~~s~~~~~d~l~~l~~le~ 260 (277)
..... ..++|+.+ +..|.++|+++++.+.... .++....-|+|+.++|.+.|.
T Consensus 154 ~~~~~-----~~~rQd~~~~y~~nga~y~~~~~~~~~~~~~~~~~~~~~~m~~~~~iDID~~~D~~~ae~ 218 (222)
T TIGR03584 154 FPEHF-----NTRSQDLEEAYHDAGQFYWGKSQAWLESGPIFSPHSIPIVLPRHLVQDIDTLEDWERAEL 218 (222)
T ss_pred CCCcc-----cCCCCCCchheeeCCeEEEEEHHHHHhcCCccCCCcEEEEeCccceeCCCCHHHHHHHHH
Confidence 43211 11345544 6789999999999875432 234445578899999987764
No 9
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.4e-24 Score=182.53 Aligned_cols=204 Identities=21% Similarity=0.234 Sum_probs=157.0
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeE-EecCCcCCCcHH
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADV-IMTSESCRNGTE 125 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~v-i~~~~~~~~g~~ 125 (277)
||+..|||||+|+|+|.++|++..++|+|||.|+|++++.++.||+|+|+++.++|.+.+.+||+++ +.+|+..+.+.+
T Consensus 1 ~~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A~~ygak~~~~Rp~~LA~D~a 80 (228)
T COG1083 1 MMKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEAKKYGAKVFLKRPKELASDRA 80 (228)
T ss_pred CcceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHHHHhCccccccCChhhccCch
Confidence 5788999999999999999999999999999999999999999999999999999999999999998 788877776654
Q ss_pred H----HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc-CCCcEEEEEeeecCCCCCCCCCceEEEECCCceEE
Q 023786 126 R----CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (277)
Q Consensus 126 ~----i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~ 200 (277)
+ +.++++.+....|.++.++++.|+++..+|++.++.|.+ ..++++++ +++. ..|. +-....+|.+.
T Consensus 81 st~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa--~e~e----~~p~--k~f~~~~~~~~ 152 (228)
T COG1083 81 STIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSA--VECE----HHPY--KAFSLNNGEVK 152 (228)
T ss_pred hHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEE--eecc----cchH--HHHHhcCCcee
Confidence 3 456666665567889999999999999999999999875 45777774 4431 1111 11122335665
Q ss_pred eeecCCcCCCCCCCCCCCCC--ceEEEEEEeecHHHHhhcc----------CCCCCCCccccChHHHHHHHcCC
Q 023786 201 YFSRGLIPYNKSGKVNPQFP--YLLHLGIQSYDSNFLKIYP----------GLHPTPLQLEEDLEQLKVLENGY 262 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~--~~~~~Giy~~~~~~l~~~~----------~~~~s~~~~~d~l~~l~~le~g~ 262 (277)
.+.+.+... .++|+.+ +..|..+|+++++.|..-. .++.....|+|+..+|++.|.-+
T Consensus 153 ~~~~~~~~~----~rrQ~Lpk~Y~~NgaiYi~~~~~l~e~~~~f~~~~~~y~m~~~~~~DID~~~Dl~iae~l~ 222 (228)
T COG1083 153 PVNEDPDFE----TRRQDLPKAYRENGAIYINKKDALLENDCFFIPNTILYEMPEDESIDIDTELDLEIAENLI 222 (228)
T ss_pred ecccCCccc----cccccchhhhhhcCcEEEehHHHHhhcCceecCCceEEEcCcccccccccHHhHHHHHHHh
Confidence 554433212 1355543 6788999999999886544 35566678999999998777543
No 10
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=5e-23 Score=189.94 Aligned_cols=207 Identities=21% Similarity=0.249 Sum_probs=155.7
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc-CCeEEecCCcCC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCR 121 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~-g~~vi~~~~~~~ 121 (277)
|+..+||||||+||||. ||.|.+++|+||++|+++++... ..++++|+.++ +.+.+.+.+. .+.++.+ ..+
T Consensus 1 ~~~~~vILAAGkGTRMkS~lPKVLH~vaGkpMl~hVi~~a~~l-~~~~i~vVvGh~ae~V~~~~~~~~~v~~v~Q--~eq 77 (460)
T COG1207 1 MSLSAVILAAGKGTRMKSDLPKVLHPVAGKPMLEHVIDAARAL-GPDDIVVVVGHGAEQVREALAERDDVEFVLQ--EEQ 77 (460)
T ss_pred CCceEEEEecCCCccccCCCcccchhccCccHHHHHHHHHhhc-CcceEEEEEcCCHHHHHHHhccccCceEEEe--ccc
Confidence 45679999999999997 89999999999999999999987 58899988874 6666666543 3666554 446
Q ss_pred CcHH-HHHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCce
Q 023786 122 NGTE-RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGY 198 (277)
Q Consensus 122 ~g~~-~i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~ 198 (277)
.||+ .+..|+.++. .....++++.||.||+++++++.|++.+... .+.+++++..+ .||..|+ ++++.+|.
T Consensus 78 lGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~-~~~~tvLt~~~-----~dP~GYGRIvr~~~g~ 151 (460)
T COG1207 78 LGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAH-GAAATVLTAEL-----DDPTGYGRIVRDGNGE 151 (460)
T ss_pred CChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhc-CCceEEEEEEc-----CCCCCcceEEEcCCCc
Confidence 7775 4778888883 2334799999999999999999999988653 34455555554 6887764 56788888
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc-----CCCCCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-----GLHPTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~-----~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
+..+-|. +|....|.....+|+|+|+|+.+.|.... ++.+.+|+.+|.++.++ ..|.++.++..+
T Consensus 152 V~~IVE~-----KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~--~~g~~V~a~~~~ 221 (460)
T COG1207 152 VTAIVEE-----KDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIAR--NEGEKVRAVHVD 221 (460)
T ss_pred EEEEEEc-----CCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHH--hCCCeEEEEecC
Confidence 8665432 23223455678999999999988765543 34566888889888765 788888888765
No 11
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.90 E-value=2.4e-22 Score=174.46 Aligned_cols=199 Identities=27% Similarity=0.345 Sum_probs=136.0
Q ss_pred ceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCe-EEecCCcCC----Cc
Q 023786 49 RVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGAD-VIMTSESCR----NG 123 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~-vi~~~~~~~----~g 123 (277)
++.+||||||+|+||++|++++++|+|||+|+++++.+++.+++|+|+++++++.+.+.++++. ++.++.... +.
T Consensus 1 ~~~~iIlA~G~s~R~~~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (223)
T cd02513 1 KILAIIPARGGSKGIPGKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTDDEEIAEVARKYGAEVPFLRPAELATDTASS 80 (223)
T ss_pred CeEEEEecCCCCCCCCCcccchhCCccHHHHHHHHHHhCCCCCEEEEECCcHHHHHHHHHhCCCceeeCChHHCCCCCCc
Confidence 4679999999999999999999999999999999999886689999999888888887777763 333332222 22
Q ss_pred HHHHHHHHHHccc---CCCEEEEEcCCcccCCHHHHHHHHHHHHcC-CCcEEEEEeeecCCCCCCCCCceEEEECCCc-e
Q 023786 124 TERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKCVVDNHG-Y 198 (277)
Q Consensus 124 ~~~i~~al~~~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~~~-~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g-~ 198 (277)
.+++.++++.++. ++|++++++||+||+++++++++++.+.++ .+++++ +.+.. ++.......+.+| .
T Consensus 81 ~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~ 153 (223)
T cd02513 81 IDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFS--VTEFH-----RFPWRALGLDDNGLE 153 (223)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEE--EEecC-----cCcHHheeeccCCce
Confidence 3568888877642 258999999999999999999999988653 354444 33321 1111112223333 2
Q ss_pred EEeeecCCcCCCCCCCCCCC--CCceEEEEEEeecHHHHhhcc----------CCCCCCCccccChHHHHHHHc
Q 023786 199 AIYFSRGLIPYNKSGKVNPQ--FPYLLHLGIQSYDSNFLKIYP----------GLHPTPLQLEEDLEQLKVLEN 260 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~--~~~~~~~Giy~~~~~~l~~~~----------~~~~s~~~~~d~l~~l~~le~ 260 (277)
+..+.... ..++|+ ..+..|.|+|+++++.+.... .++.....++|+.++|.+.|.
T Consensus 154 ~~~~~~~~------~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 154 PVNYPEDK------RTRRQDLPPAYHENGAIYIAKREALLESNSFFGGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred eccCcccc------cCCcCCChhHeeECCEEEEEEHHHHHhcCCccCCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 22221111 112232 346788899999999776542 123334577888889877653
No 12
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=3.7e-22 Score=175.25 Aligned_cols=196 Identities=20% Similarity=0.287 Sum_probs=150.4
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc---hHHHHHH---HHcCCeEEecCCc
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECC---QQFGADVIMTSES 119 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~---~~i~~~~---~~~g~~vi~~~~~ 119 (277)
+||||||.|||+. +|+|+|+.+||||.|.++.+..+ ++++|.|+++. +.+.++. .++|+++.+..+.
T Consensus 3 giILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~a-GI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~ 81 (286)
T COG1209 3 GVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLA-GIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP 81 (286)
T ss_pred cEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHc-CCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence 9999999999995 69999999999999999999998 79999998864 4454544 2467787766667
Q ss_pred CCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc-CCCcEEEEEeeecCCCCCCCCCceEEE-ECCC
Q 023786 120 CRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVKCV-VDNH 196 (277)
Q Consensus 120 ~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~~~ 196 (277)
.+.|.+ .+..|-+++ .+|.|+++.||.-|.. .+.++++.+.+ ..++ +++..+ +.||++++|+ .+++
T Consensus 82 ~p~GlA~Av~~a~~fv--~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga--~i~~~~-----V~dP~rfGV~e~d~~ 150 (286)
T COG1209 82 EPDGLAHAVLIAEDFV--GDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGA--TILLYE-----VDDPSRYGVVEFDED 150 (286)
T ss_pred CCCcHHHHHHHHHhhc--CCCceEEEecCceecc--ChHHHHHHHhccCCCc--EEEEEE-----cCCcccceEEEEcCC
Confidence 777864 456666777 3577999999996654 89999988765 3343 333444 3799999986 6778
Q ss_pred ceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC---CCccccChHHHHHHHcCCeeEEEEee
Q 023786 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 197 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s---~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
|+++...|||. +..|+++.+|+|+|++++++.+..+++| ++|.+|..+. .++.|..+......
T Consensus 151 ~~v~~l~EKP~---------~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~--~i~~G~~~~~~~~~ 216 (286)
T COG1209 151 GKVIGLEEKPK---------EPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDL--YIEKGYLVVAILIR 216 (286)
T ss_pred CcEEEeEECCC---------CCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHH--HHHcCcEEEEEEcc
Confidence 89988877762 2357899999999999999999888877 4566565543 57899877655543
No 13
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=99.88 E-value=1.3e-20 Score=171.53 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=138.5
Q ss_pred ceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH------------
Q 023786 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------ 108 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~------------ 108 (277)
++.|||||||.||||. ||+|+|++|+|+|+|+++.+.++ ++++|+|++++ +.+.+++..
T Consensus 3 ~mkavILAaG~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~-Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (297)
T TIGR01105 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCCCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhc
Confidence 4569999999999995 79999999999999999999987 79999999974 566666531
Q ss_pred -------------cCCeEEecCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCH-------HHHHHHHHHHHcCC
Q 023786 109 -------------FGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP 167 (277)
Q Consensus 109 -------------~g~~vi~~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~-------~~i~~li~~~~~~~ 167 (277)
+++++.+..+..+.|++ ++..|.+.++ .+.++++.||. +++. .++.++++.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~--~~~flvv~gD~-l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 82 KRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG--DNPFVVVLPDI-IIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred chhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC--CCCEEEEECCe-eccccccccchhHHHHHHHHHHHhC
Confidence 24555555455566775 5888888884 24578888997 5543 48889998876432
Q ss_pred CcEEEEEeeecCCCCCCCCCceEEEE-----CCCce---EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 168 DAVFSTAVTSLKPEDAFDPNRVKCVV-----DNHGY---AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 168 ~~~v~~~~~~~~~~~~~d~~~~~v~~-----~~~g~---~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
.+++. +.... .++.+++++. +.+|. +..|.+||.. + .+..+.+.++|+|+|++++++.+.
T Consensus 159 ~~~~~--~~~~~----~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T TIGR01105 159 RSQVL--AKRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWAELE 226 (297)
T ss_pred CcEEE--EEEcC----CCCccceEEEecccccCCCCeeeEeEEEECCCC-c-----ccCCcCEEEEEEEEECHHHHHHHh
Confidence 33322 22221 3567777764 33564 4667666521 1 112357999999999999999886
Q ss_pred CCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 240 GLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 240 ~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
...++.....+-.+.+..+-.+.++..+..+.
T Consensus 227 ~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g 258 (297)
T TIGR01105 227 RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTG 258 (297)
T ss_pred cCCCCCCCeeeHHHHHHHHHhcCCEEEEEecc
Confidence 65443322222112333333455788777544
No 14
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.88 E-value=6.2e-21 Score=166.24 Aligned_cols=204 Identities=21% Similarity=0.292 Sum_probs=140.1
Q ss_pred EEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCcHHH
Q 023786 52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER 126 (277)
Q Consensus 52 aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g~~~ 126 (277)
|||||||.|+||+ +|+|++++|+|||+|+++++.++ ++++|+|+++. +.+.+++..+++.++..++ ..|...+
T Consensus 1 aiIlaaG~g~R~~~~~pK~l~~v~gkpli~~~i~~l~~~-~i~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~-~~g~~~a 78 (229)
T cd02540 1 AVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVLDAARAL-GPDRIVVVVGHGAEQVKKALANPNVEFVLQEE-QLGTGHA 78 (229)
T ss_pred CEEEeCCCCccCCCCCChhcceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhCCCCcEEEECCC-CCCCHHH
Confidence 6999999999995 79999999999999999999988 58898888763 5666677666777665433 2344467
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCceEEeeecC
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFSRG 205 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~~~~f~~~ 205 (277)
+.+|+..++.+.|.+++++||+||++++++.++++.+.+. ++.+++...+. .+|..+. +..+++|++..+.++
T Consensus 79 i~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~-~~~~~~~~~~~-----~~p~~~~~~~~~~~~~v~~~~ek 152 (229)
T cd02540 79 VKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA-GADVTVLTAEL-----EDPTGYGRIIRDGNGKVLRIVEE 152 (229)
T ss_pred HHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc-CCcEEEEEEEc-----CCCCCccEEEEcCCCCEEEEEEC
Confidence 8899988853257899999999999999999999988653 23333333332 3454443 345677888777654
Q ss_pred CcCCCCCCCCCCCCCceEEEEEEeecHHHHhh-ccCCCC----CCCccccChHHHHHHHcCCeeEEEEee
Q 023786 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~-~~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
+...+ .+......++|+|+|+++.+.. +..... .+++..|.++ .+++.|.+++.+..+
T Consensus 153 ~~~~~-----~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~--~~~~~g~~v~~~~~~ 215 (229)
T cd02540 153 KDATE-----EEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIA--LAVADGLKVAAVLAD 215 (229)
T ss_pred CCCCh-----HHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHH--HHHHCCCEEEEEEcC
Confidence 31111 1112357899999999876543 332111 2222223333 345788889888875
No 15
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.87 E-value=7.2e-21 Score=184.10 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=144.0
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN 122 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~ 122 (277)
|++.|||||||+|+||+ ||+|++++|+|||+|+++++.++ ++++|+|++++ +.+.+++...++.++.. +.+.
T Consensus 6 ~~~~avILAaG~gtRl~~~~pK~llpi~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~i~~v~~--~~~~ 82 (481)
T PRK14358 6 RPLDVVILAAGQGTRMKSALPKVLHPVAGRPMVAWAVKAARDL-GARKIVVVTGHGAEQVEAALQGSGVAFARQ--EQQL 82 (481)
T ss_pred CCceEEEECCCCCCcCCCCCCceecEECCeeHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhccCCcEEecC--CCcC
Confidence 56789999999999995 89999999999999999999987 69999999975 56666665556665543 2333
Q ss_pred cH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-ECCCceEE
Q 023786 123 GT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHGYAI 200 (277)
Q Consensus 123 g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~~~g~~~ 200 (277)
|+ .+++.+++.+....+.+++++||+||+++.+++++++.+.+. ++.+++...+. .++..++++ .+++|++.
T Consensus 83 Gt~~al~~~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~-~~~~ti~~~~~-----~~~~~yG~v~~d~~g~v~ 156 (481)
T PRK14358 83 GTGDAFLSGASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ-GSAMTILTGEL-----PDATGYGRIVRGADGAVE 156 (481)
T ss_pred CcHHHHHHHHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc-CCeEEEEEEEc-----CCCCCceEEEECCCCCEE
Confidence 44 568888887742234488999999999999999999988764 45555544443 345555554 57788998
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHH---HHhhccCCCC-CCCccccChHHHHHHHcCCeeEEEEee
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN---FLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~---~l~~~~~~~~-s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
.|.+++-+.+. +....+.++|+|+|+++ +++.+..... .+++..|.++ .+++.|.++..+...
T Consensus 157 ~~~Ek~~~~~~-----~~~~~~~n~Giyi~~~~~~~~~~~i~~~~~~ge~~l~d~i~--~~~~~g~~i~~~~~~ 223 (481)
T PRK14358 157 RIVEQKDATDA-----EKAIGEFNSGVYVFDARAPELARRIGNDNKAGEYYLTDLLG--LYRAGGAQVRAFKLS 223 (481)
T ss_pred EEEECCCCChh-----HhhCCeEEEEEEEEchHHHHHHHhcCCCccCCeEEHHHHHH--HHHHCCCeEEEEecC
Confidence 99886532110 11234689999999954 4555433211 2333333332 346788788777654
No 16
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7.5e-20 Score=170.72 Aligned_cols=200 Identities=23% Similarity=0.266 Sum_probs=146.8
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cCCeEEecCCc
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSES 119 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g~~vi~~~~~ 119 (277)
.|||||||.||||. ||||+|++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.+ .+.++.+..+.
T Consensus 3 kavILagG~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~-Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~ 81 (358)
T COG1208 3 KAVILAGGYGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAA-GVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEK 81 (358)
T ss_pred eEEEEeCCccccccccccCCCcccceeCCccHHHHHHHHHHHC-CCcEEEEEeccchHHHHHHHhcccccCCceEEEecC
Confidence 49999999999995 79999999999999999999987 79999999974 778888765 35677665555
Q ss_pred CCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEE-CCC-
Q 023786 120 CRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV-DNH- 196 (277)
Q Consensus 120 ~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~-~~~- 196 (277)
.+.||+ +++++.+.+.. +.|++++||. +.+. +++.+++.++++ .+..++..... .++..++++. +.+
T Consensus 82 ~~lGTag~l~~a~~~l~~--~~f~v~~GDv-~~~~-dl~~l~~~~~~~-~~~~~~~~~~~-----~~~~~~Gvv~~~~~~ 151 (358)
T COG1208 82 EPLGTAGALKNALDLLGG--DDFLVLNGDV-LTDL-DLSELLEFHKKK-GALATIALTRV-----LDPSEFGVVETDDGD 151 (358)
T ss_pred CcCccHHHHHHHHHhcCC--CcEEEEECCe-eecc-CHHHHHHHHHhc-cCccEEEEEec-----CCCCcCceEEecCCC
Confidence 567775 58888888852 7799999999 4444 499999998876 55555444443 3444455543 423
Q ss_pred ceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 197 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+++..|.++|.+ . ...+.+.|+|+|+|++++++.+.......++. |.+. ++++.+.++..+..++
T Consensus 152 ~~v~~f~ekp~~-~------~~~~~~in~Giyi~~~~v~~~i~~~~~~~~~~-~~~~--~l~~~~~~v~~~~~~g 216 (358)
T COG1208 152 GRVVEFREKPGP-E------EPPSNLINAGIYIFDPEVFDYIEKGERFDFEE-ELLP--ALAAKGEDVYGYVFEG 216 (358)
T ss_pred ceEEEEEecCCC-C------CCCCceEEeEEEEECHHHhhhcccCCcccchh-hHHH--HHHhCCCcEEEEEeCC
Confidence 589899888743 1 12467999999999999999666555555655 3333 3456666677766554
No 17
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.85 E-value=2.6e-20 Score=163.48 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=129.7
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHH---HHHHHcCCe---EEecCC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD---VIMTSE 118 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~---~~~~~~g~~---vi~~~~ 118 (277)
|++.+||||||.|+||+ +|+|++++|+|||+|+++++...+.+++|+|+++++++. +.+.+++.. +.....
T Consensus 1 ~~~~~iIlAaG~g~R~g~~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (230)
T PRK13385 1 MNYELIFLAAGQGKRMNAPLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQLNVADQRVEVVKG 80 (230)
T ss_pred CceEEEEECCeeccccCCCCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHhcCcCCCceEEcCC
Confidence 46789999999999995 799999999999999999998876799999999865433 344555531 111111
Q ss_pred cCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCce
Q 023786 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (277)
Q Consensus 119 ~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~ 198 (277)
-.+...++.+|++.+. +.+.+++++||+||++++.++++++.+.+. ++.+++ .++. +.++++ .+|.
T Consensus 81 -g~~r~~sv~~gl~~~~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~-~~~~~~--~~~~-------dti~~~--~~~~ 146 (230)
T PRK13385 81 -GTERQESVAAGLDRIG-NEDVILVHDGARPFLTQDIIDRLLEGVAKY-GAAICA--VEVK-------DTVKRV--KDKQ 146 (230)
T ss_pred -CchHHHHHHHHHHhcc-CCCeEEEccCCCCCCCHHHHHHHHHHHhhC-CcEEEE--Eecc-------ceEEEE--cCCe
Confidence 1123467889998875 357899999999999999999999988654 333332 2211 123333 2343
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
. ++.++ + ...+..-+.|.|+.+.|...........+...+ +...+.+.|.+++.++.+.
T Consensus 147 ~----~~~i~--r-------~~~~~~qtpq~f~~~~l~~~~~~~~~~~~~~td-~~~~~~~~g~~v~~v~~~~ 205 (230)
T PRK13385 147 V----IETVD--R-------NELWQGQTPQAFELKILQKAHRLASEQQFLGTD-EASLVERSPHPVKLVQGSY 205 (230)
T ss_pred e----EeccC--H-------HHHhhhcCCceeeHHHHHHHHHHHHhcCCCcCc-HHHHHHHcCCCEEEEECCc
Confidence 3 12222 1 123445567999988887765432222222223 4555778999999887543
No 18
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=9.9e-20 Score=176.16 Aligned_cols=210 Identities=21% Similarity=0.244 Sum_probs=142.9
Q ss_pred ceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCc
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g 123 (277)
++.|||||||.||||+ ||+|++++|+|||+|+++++.+. ++++++|++++ +.+.+++...+..+.+..++...|
T Consensus 4 ~~~avILAaG~gtRm~~~~pK~llpi~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~~~~~~~~~~~~G 82 (482)
T PRK14352 4 PTAVIVLAAGAGTRMRSDTPKVLHTLAGRSMLGHVLHAAAGL-APQHLVVVVGHDRERVAPAVAELAPEVDIAVQDEQPG 82 (482)
T ss_pred CceEEEEcCCCCCcCCCCCCceeceeCCccHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHHhhccCCccEEEeCCCCCC
Confidence 4579999999999995 79999999999999999999987 68898888864 455555544322222222333445
Q ss_pred H-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCceEE
Q 023786 124 T-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAI 200 (277)
Q Consensus 124 ~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~~~ 200 (277)
+ .+++.|++.+.. ..+.+++++||+||+++++++++++.+.+. ++.+++...+. .+|..+. +..+++|++.
T Consensus 83 t~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~-~~~~~v~~~~~-----~~p~~yg~~~~~~~g~V~ 156 (482)
T PRK14352 83 TGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE-GNAVTVLTTTL-----DDPTGYGRILRDQDGEVT 156 (482)
T ss_pred cHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc-CCeEEEEEeec-----CCCCCCCEEEECCCCCEE
Confidence 4 468888888742 246799999999999999999999988654 44455444333 3454443 3457788888
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc-cCCCC----CCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~-~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
.|.+++.+.. .+......++|+|+|+++.|..+ ..... .+++..|.++ .+++.|+++..+..+..
T Consensus 157 ~~~EKp~~~~-----~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~--~l~~~g~~V~~~~~~g~ 226 (482)
T PRK14352 157 AIVEQKDATP-----SQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLA--IAREAGHRVGAHHADDS 226 (482)
T ss_pred EEEECCCCCH-----HHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHH--HHHHCCCeEEEEecCCc
Confidence 8877653211 11123578999999999998654 22211 2333334343 34578888998886554
No 19
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=99.84 E-value=2e-19 Score=163.50 Aligned_cols=194 Identities=19% Similarity=0.252 Sum_probs=135.2
Q ss_pred ceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecC-c--hHHHHHHH---HcCCeEEec
Q 023786 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD-D--EKIAECCQ---QFGADVIMT 116 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~-~--~~i~~~~~---~~g~~vi~~ 116 (277)
+..|||||||.||||. ||+|+|++|||||+|+++.+..+ ++++|+|++. + +.+.+++. .+|+++.+.
T Consensus 3 ~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~a-Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~ 81 (292)
T PRK15480 3 TRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYK 81 (292)
T ss_pred ceEEEEECCCcccccCcccCCCCceEeEECCEEHHHHHHHHHHHC-CCCEEEEEecCCchHHHHHHHcCccccCceeEEE
Confidence 3669999999999995 79999999999999999999988 7999987653 2 45566653 356665444
Q ss_pred CCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-EC
Q 023786 117 SESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD 194 (277)
Q Consensus 117 ~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~ 194 (277)
.+..+.|++ ++..|.+.+. + +.++++.||.+|. ..++..+++.+.+. ++..++...+. .||.+++++ .|
T Consensus 82 ~q~~~~Gta~Al~~a~~~i~-~-~~~~lv~gD~i~~-~~~l~~ll~~~~~~-~~~~tv~~~~v-----~~p~~yGvv~~d 152 (292)
T PRK15480 82 VQPSPDGLAQAFIIGEEFIG-G-DDCALVLGDNIFY-GHDLPKLMEAAVNK-ESGATVFAYHV-----NDPERYGVVEFD 152 (292)
T ss_pred ECCCCCCHHHHHHHHHHHhC-C-CCEEEEECCeeee-ccCHHHHHHHHHhC-CCCeEEEEEEc-----CCcccCcEEEEC
Confidence 445556764 4777777774 2 3367778999775 45789999887543 22233333332 467777665 57
Q ss_pred CCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC---CCccccChHHHHHHHcCCe
Q 023786 195 NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGYK 263 (277)
Q Consensus 195 ~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s---~~~~~d~l~~l~~le~g~~ 263 (277)
++|+++.|.+||. +..+.+.++|+|+|++++++.+....++ +++..|.+. .+++.|..
T Consensus 153 ~~g~v~~i~EKP~---------~p~s~~a~~GiY~~~~~v~~~~~~~~~~~~ge~~itd~~~--~~l~~g~~ 213 (292)
T PRK15480 153 QNGTAISLEEKPL---------QPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINR--IYMEQGRL 213 (292)
T ss_pred CCCcEEEEEECCC---------CCCCCEEEEEEEEEChHHHHHHhhcCCCCCCeeEhHHHHH--HHHhcCCe
Confidence 7889988887752 1235789999999999999887655444 344333332 24567753
No 20
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=99.84 E-value=4.8e-19 Score=156.08 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=122.2
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc---hHHHHHHH---HcCCeEEecCC
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSE 118 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~---~~i~~~~~---~~g~~vi~~~~ 118 (277)
.|||||||.||||. ||+|+|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++. .+++++.+..+
T Consensus 2 ~~iIlAaG~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (240)
T cd02538 2 KGIILAGGSGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLA-GIREILIISTPEDLPLFKELLGDGSDLGIRITYAVQ 80 (240)
T ss_pred eEEEEcCcCcccCCccccCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEeCcchHHHHHHHHhcccccCceEEEeeC
Confidence 49999999999994 79999999999999999999987 79999988753 45556553 24556654434
Q ss_pred cCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEE-EECCC
Q 023786 119 SCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNH 196 (277)
Q Consensus 119 ~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v-~~~~~ 196 (277)
....|+ .++..+.+.++ .+.++++.||+|+.+ .++.++++.+.+. ++.+++...+. .++..+++ ..+++
T Consensus 81 ~~~~G~~~al~~a~~~~~--~~~~lv~~gD~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~g~v~~d~~ 151 (240)
T cd02538 81 PKPGGLAQAFIIGEEFIG--DDPVCLILGDNIFYG-QGLSPILQRAAAQ-KEGATVFGYEV-----NDPERYGVVEFDEN 151 (240)
T ss_pred CCCCCHHHHHHHHHHhcC--CCCEEEEECCEEEcc-HHHHHHHHHHHhc-CCCcEEEEEEC-----CchhcCceEEecCC
Confidence 444566 45777887774 366889999998765 4788899877642 22233333333 23444444 45778
Q ss_pred ceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccC
Q 023786 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG 240 (277)
Q Consensus 197 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 240 (277)
|++..|.+++.. ..+.+.++|+|+|++++++.+..
T Consensus 152 g~v~~~~ekp~~---------~~~~~~~~Giyi~~~~~l~~l~~ 186 (240)
T cd02538 152 GRVLSIEEKPKK---------PKSNYAVTGLYFYDNDVFEIAKQ 186 (240)
T ss_pred CcEEEEEECCCC---------CCCCeEEEEEEEECHHHHHHHHh
Confidence 899888776421 12457899999999999977653
No 21
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=1.3e-19 Score=173.92 Aligned_cols=206 Identities=17% Similarity=0.176 Sum_probs=140.4
Q ss_pred ceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCc
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG 123 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g 123 (277)
.+.|||||||+||||+ ||+|++++|+|||+|+++++.+. ++++|+|+++. +.+.+++...+++++..++ +.|
T Consensus 5 ~~~aiILAaG~gtR~~~~~pK~l~~i~gkpli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~v~~~~--~~G 81 (456)
T PRK14356 5 TTGALILAAGKGTRMHSDKPKVLQTLLGEPMLRFVYRALRPL-FGDNVWTVVGHRADMVRAAFPDEDARFVLQEQ--QLG 81 (456)
T ss_pred ceeEEEEcCCCCccCCCCCCceecccCCCcHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhccccCceEEEcCC--CCC
Confidence 3679999999999995 89999999999999999999887 58899888864 5555555444566665432 334
Q ss_pred H-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEe
Q 023786 124 T-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (277)
Q Consensus 124 ~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~ 201 (277)
+ .++..+++.++. +.|.+++++||+||+++++++.+++.+.. .++ ++...+. .+|..++++..++|++..
T Consensus 82 t~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-~~~--~l~~~~~-----~~~~~~g~v~~~~g~V~~ 153 (456)
T PRK14356 82 TGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAAG-ADL--AFMTLTL-----PDPGAYGRVVRRNGHVAA 153 (456)
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHhc-CCE--EEEEEEc-----CCCCCceEEEEcCCeEEE
Confidence 3 467888877742 35789999999999999999999987653 233 3333332 466666666557888887
Q ss_pred eecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc-CCC----CCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLH----PTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 202 f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~-~~~----~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
|.+++-..+.. ....+.+.++|+|.|++++++.+. ... ..+++..|.++. +++.|.+++.+..+
T Consensus 154 ~~ek~~~~~~~---~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~--~~~~g~~v~~~~~~ 222 (456)
T PRK14356 154 IVEAKDYDEAL---HGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGL--AVAEGMNVLGVNCG 222 (456)
T ss_pred EEECCCCChHH---hhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHH--HHHCCCeEEEEEcC
Confidence 76654211100 011346789999999999876542 211 122332233322 34678888887753
No 22
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=3.6e-19 Score=171.05 Aligned_cols=203 Identities=15% Similarity=0.170 Sum_probs=141.7
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCC
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR 121 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~ 121 (277)
||++.+||||||.|+||. ||+|++++|+|||+|+++.+.+. ++++|+|+++. +.+.+++...++.++..+ ..
T Consensus 3 ~~~~~aiIlAaG~gtRl~~~~pK~l~~i~gkpli~~~i~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~i~~~--~~ 79 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMYSDLPKVLHTLAGKPMVQHVIDAANEL-GAQHVHLVYGHGGDLLKQTLADEPLNWVLQA--EQ 79 (456)
T ss_pred CCCceEEEEcCCCCCcCCCCCChhcceeCChhHHHHHHHHHHhc-CCCcEEEEECCCHHHHHHhhccCCcEEEECC--CC
Confidence 456889999999999995 79999999999999999999887 68999999874 556665544445655543 23
Q ss_pred CcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEE
Q 023786 122 NGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (277)
Q Consensus 122 ~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~ 200 (277)
.|+ .++..+++.+. +.+.+++++||+||+++++++++++.+.+. + +++...+. .+|..+.++.+.+|++.
T Consensus 80 ~Gt~~al~~a~~~l~-~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~-~--~~i~~~~~-----~~~~~yG~v~~~~g~V~ 150 (456)
T PRK09451 80 LGTGHAMQQAAPFFA-DDEDILMLYGDVPLISVETLQRLRDAKPQG-G--IGLLTVKL-----DNPTGYGRITRENGKVV 150 (456)
T ss_pred CCcHHHHHHHHHhhc-cCCcEEEEeCCcccCCHHHHHHHHHHhhcC-C--EEEEEEEc-----CCCCCceEEEecCCeEE
Confidence 444 56888887774 347899999999999999999999876543 3 22223332 35555666666788998
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc-cCCCC----CCCccccChHHHHHHHcCCeeEEEE
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY-PGLHP----TPLQLEEDLEQLKVLENGYKMKVQQ 268 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~-~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~ 268 (277)
.|.+++...+ .+..+...++|+|+|+++.|..+ ..+.. .+++..|.+. .+++.|+++..+.
T Consensus 151 ~~~EKp~~~~-----~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~--~~i~~g~~v~~~~ 216 (456)
T PRK09451 151 GIVEQKDATD-----EQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIA--LAHQEGREIVAVH 216 (456)
T ss_pred EEEECCCCCh-----HHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHH--HHHHCCCeEEEEe
Confidence 9988762111 01123578999999999887643 22221 2333323333 4568888888875
No 23
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.84 E-value=5.1e-19 Score=152.92 Aligned_cols=195 Identities=23% Similarity=0.257 Sum_probs=132.5
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHH---cCCeEEecCCcC
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQ---FGADVIMTSESC 120 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~---~g~~vi~~~~~~ 120 (277)
|||||||.|+||+ ||+|++++|+|||+|+++.+.+. ++++|+|+++ .+.+.+++.. .+.++.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~v~vv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQ-GISRIVLSVGYLAEQIEEYFGDGYRGGIRIYYVIEPE 79 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCcchHHHHHHHHHHC-CCCEEEEEcccCHHHHHHHHcCccccCceEEEEECCC
Confidence 6999999999995 69999999999999999999987 6999999997 4566666653 245543322223
Q ss_pred CCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCce-EEEECCCce
Q 023786 121 RNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRV-KCVVDNHGY 198 (277)
Q Consensus 121 ~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~-~v~~~~~g~ 198 (277)
..|+ .++..+++.+. .+.+++++||+|+ +.++.++++.+.+. ++.+++.+.+. .++..+ .+..+++|+
T Consensus 80 ~~G~~~~l~~a~~~~~--~~~~lv~~~D~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~-----~~~~~~~~v~~d~~~~ 149 (223)
T cd06915 80 PLGTGGAIKNALPKLP--EDQFLVLNGDTYF--DVDLLALLAALRAS-GADATMALRRV-----PDASRYGNVTVDGDGR 149 (223)
T ss_pred CCcchHHHHHHHhhcC--CCCEEEEECCccc--CCCHHHHHHHHHhC-CCcEEEEEEEC-----CCCCcceeEEECCCCe
Confidence 3444 56888888873 4679999999976 45788888887653 33333333333 122222 345677889
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+..|.+++.. ..+.+.++|+|+|++++|+.+...+ ..++. |.+. ++++.| ++.+++.+.
T Consensus 150 v~~~~ek~~~---------~~~~~~~~Giy~~~~~~l~~~~~~~-~~~~~-~~~~--~l~~~~-~v~~~~~~~ 208 (223)
T cd06915 150 VIAFVEKGPG---------AAPGLINGGVYLLRKEILAEIPADA-FSLEA-DVLP--ALVKRG-RLYGFEVDG 208 (223)
T ss_pred EEEEEeCCCC---------CCCCcEEEEEEEECHHHHhhCCccC-CChHH-HHHH--HHHhcC-cEEEEecCC
Confidence 9888775421 1356889999999999998775432 11211 2222 234565 788887654
No 24
>PRK10122 GalU regulator GalF; Provisional
Probab=99.84 E-value=9.7e-19 Score=159.41 Aligned_cols=207 Identities=12% Similarity=0.095 Sum_probs=135.7
Q ss_pred ceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH------------
Q 023786 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ------------ 108 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~------------ 108 (277)
++.|||||||.||||. ||+|+|++|+|+|+|+++.+.++ ++++|+|++++ +.+.+++..
T Consensus 3 ~mkavIlAaG~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~ 81 (297)
T PRK10122 3 NLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAA-GIKEIVLVTHASKNAVENHFDTSYELESLLEQRV 81 (297)
T ss_pred ceEEEEECCcCCcccCcccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcc
Confidence 4569999999999995 79999999999999999999998 79999999974 556555521
Q ss_pred -------------cCCeEEecCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCH-------HHHHHHHHHHHcCC
Q 023786 109 -------------FGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEP-------EIIDGVVKALQAAP 167 (277)
Q Consensus 109 -------------~g~~vi~~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~-------~~i~~li~~~~~~~ 167 (277)
+++++.+..+..+.|++ ++.+|...+. .+.++++.||. +++. .++.++++.+.+..
T Consensus 82 k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~--~~~fvvi~gD~-l~~~~~~~~~~~dl~~li~~h~~~~ 158 (297)
T PRK10122 82 KRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG--DNPFVVVLPDV-VIDDASADPLRYNLAAMIARFNETG 158 (297)
T ss_pred hhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC--CCCEEEEECCe-eccCccccccchhHHHHHHHHHHhC
Confidence 24445444444556664 5888888884 24477778998 6653 37899998886543
Q ss_pred CcEEEEEeeecCCCCCCCCCceEEEE-C----CCc---eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 168 DAVFSTAVTSLKPEDAFDPNRVKCVV-D----NHG---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 168 ~~~v~~~~~~~~~~~~~d~~~~~v~~-~----~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
.. +++ +.... .++..++++. + .+| ++..|.++|.. + .+..+.+.++|+|+|++++++.+.
T Consensus 159 ~~-~~~-~~~~~----~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~-~-----~~~~s~~~~~GiYi~~~~i~~~l~ 226 (297)
T PRK10122 159 RS-QVL-AKRMP----GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ-P-----QTLDSDLMAVGRYVLSADIWPELE 226 (297)
T ss_pred Cc-EEE-EEECC----CCCCCceEEEecCcccCCCCeeeEEEEEECCCC-c-----ccCCccEEEEEEEEECHHHHHHHH
Confidence 22 222 22211 2556666654 2 355 56777776521 1 112356899999999999998886
Q ss_pred CCCCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 240 GLHPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 240 ~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
...++......-.+.+..+-.+.++..+..++
T Consensus 227 ~~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G 258 (297)
T PRK10122 227 RTEPGAWGRIQLTDAIAELAKKQSVDAMLMTG 258 (297)
T ss_pred hCCCCCCCeeeHHHHHHHHHhCCCEEEEEeCC
Confidence 54433222211112233333445777777654
No 25
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.83 E-value=1e-19 Score=163.02 Aligned_cols=197 Identities=22% Similarity=0.231 Sum_probs=143.4
Q ss_pred ceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHH-HHH----HHcCCeEEe
Q 023786 49 RVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIA-ECC----QQFGADVIM 115 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~-~~~----~~~g~~vi~ 115 (277)
.+.|+||.||.|||+. +||+.+++++|||.|.++++.++ ++++|++.++. +.+. ... .++|++++.
T Consensus 9 ~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~ns-Gi~~I~la~~y~s~sl~~~~~k~y~~~lgVei~~ 87 (371)
T KOG1322|consen 9 SVKAIILVGGYGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINS-GITKIVLATQYNSESLNRHLSKAYGKELGVEILA 87 (371)
T ss_pred ceeEEEEecCCCceeeceeccCCCcccccCcchhhHHHHHHHHhC-CCcEEEEEEecCcHHHHHHHHHHhhhccceEEEE
Confidence 4559999999999994 79999999999999999999998 79999999973 3232 223 346788887
Q ss_pred cCCcCCCcHHH-HHHHHHHcccCCC-EEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-
Q 023786 116 TSESCRNGTER-CNEALQKLEKKYD-IVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV- 192 (277)
Q Consensus 116 ~~~~~~~g~~~-i~~al~~~~~~~d-~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~- 192 (277)
..+..+.+++. +..+-+.+....| .|+++++|.-+ .-.+.++++.|+++ ++..++.++++ .+|+.|+++
T Consensus 88 s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~--~~p~~~~vqfH~~~-gae~TI~~t~v-----depSkyGvv~ 159 (371)
T KOG1322|consen 88 STETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVIC--RMPYKEMVQFHRAH-GAEITIVVTKV-----DEPSKYGVVV 159 (371)
T ss_pred EeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeee--cCCHHHHHHHHHhc-CCceEEEEEec-----cCccccceEE
Confidence 66666777654 3444444432223 79999999844 34688999998875 56677777775 457777764
Q ss_pred ECC-CceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEE
Q 023786 193 VDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQ 268 (277)
Q Consensus 193 ~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~ 268 (277)
.++ .|++..|.+||... .+...|+|+|+|++++|.++. ..+++++. |.+. .+..+.+++++.
T Consensus 160 ~d~~~grV~~F~EKPkd~---------vsnkinaGiYi~~~~vL~ri~-~~ptSiek-EifP---~~a~~~~l~a~~ 222 (371)
T KOG1322|consen 160 IDEDTGRVIRFVEKPKDL---------VSNKINAGIYILNPEVLDRIL-LRPTSIEK-EIFP---AMAEEHQLYAFD 222 (371)
T ss_pred EecCCCceeEehhCchhh---------hhccccceEEEECHHHHhHhh-hcccchhh-hhhh---hhhhcCceEEEe
Confidence 566 79999999987421 356788999999999999998 44555655 5444 334556666654
No 26
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=99.83 E-value=3.4e-19 Score=161.53 Aligned_cols=190 Identities=21% Similarity=0.266 Sum_probs=133.2
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc---hHHHHHHH---HcCCeEEecCCc
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQ---QFGADVIMTSES 119 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~---~~i~~~~~---~~g~~vi~~~~~ 119 (277)
|||||||.||||. ||+|+|++|+|||+|+++.+..+ ++++|+|++.. +.+.+++. .+|+++.+..+.
T Consensus 2 aIILAgG~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~a-Gi~~I~iv~~~~~~~~~~~~lg~g~~~g~~i~~~~q~ 80 (286)
T TIGR01207 2 GIILAGGSGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLA-GIRDILIISTPQDTPRFQQLLGDGSQWGVNLSYAVQP 80 (286)
T ss_pred EEEECCCCCccCCcccCCCCceeeEECCEEhHHHHHHHHHHC-CCCEEEEEecCCcHHHHHHHhccccccCceEEEEEcc
Confidence 8999999999994 79999999999999999999987 69999877742 45555553 356666555455
Q ss_pred CCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-ECCCc
Q 023786 120 CRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHG 197 (277)
Q Consensus 120 ~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~~~g 197 (277)
.+.|++ ++..+.+.++ .+.++++.||.+|.+ .++..+++.+.+. ++.+++...+. .||.+++++ .+++|
T Consensus 81 ~~~Gta~al~~a~~~l~--~~~~~li~gD~i~~~-~~l~~ll~~~~~~-~~~~ti~~~~v-----~~p~~yGvv~~d~~g 151 (286)
T TIGR01207 81 SPDGLAQAFIIGEDFIG--GDPSALVLGDNIFYG-HDLSDLLKRAAAR-ESGATVFAYQV-----SDPERYGVVEFDSNG 151 (286)
T ss_pred CCCCHHHHHHHHHHHhC--CCCEEEEECCEeccc-cCHHHHHHHHHhc-CCCcEEEEEEc-----cCHHHCceEEECCCC
Confidence 556664 5788888884 255677789998864 5788988877543 23334333433 467776665 57788
Q ss_pred eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC---CCccccChHHHHHHHcCC
Q 023786 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQLEEDLEQLKVLENGY 262 (277)
Q Consensus 198 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s---~~~~~d~l~~l~~le~g~ 262 (277)
+++.|.+||. +..+.+.++|+|+|++++++.+....++ +++..|.+.. +++.|.
T Consensus 152 ~V~~i~EKp~---------~~~s~~~~~GiYi~~~~i~~~l~~~~~~~~ge~eitdv~~~--~l~~g~ 208 (286)
T TIGR01207 152 RAISIEEKPA---------QPKSNYAVTGLYFYDNRVVEIARQLKPSARGELEITDLNRV--YLEEGR 208 (286)
T ss_pred eEEEEEECCC---------CCCCCEEEEEEEEEchHHHHHHhhcCCCCCCcEeHHHHHHH--HHHcCC
Confidence 9988887752 1135689999999999998877554443 3433343332 456663
No 27
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.83 E-value=5.4e-20 Score=151.95 Aligned_cols=113 Identities=31% Similarity=0.476 Sum_probs=98.2
Q ss_pred EEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHH
Q 023786 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEA 130 (277)
Q Consensus 52 aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~a 130 (277)
|||||||+||||+ +|++++++|+|||+|+++.+.+. ++++|+|+++++++.+.+..++++++..+....|...++..|
T Consensus 1 ~vILa~G~s~Rmg~~K~l~~i~g~~li~~~l~~l~~~-~~~~Ivvv~~~~~~~~~~~~~~~~~v~~~~~~~G~~~sl~~a 79 (160)
T PF12804_consen 1 AVILAAGKSSRMGGPKALLPIGGKPLIERVLEALREA-GVDDIVVVTGEEEIYEYLERYGIKVVVDPEPGQGPLASLLAA 79 (160)
T ss_dssp EEEEESSSCGGGTSCGGGSEETTEEHHHHHHHHHHHH-TESEEEEEESTHHHHHHHTTTTSEEEE-STSSCSHHHHHHHH
T ss_pred CEEECCcCcccCCCCccceeECCccHHHHHHHHhhcc-CCceEEEecChHHHHHHHhccCceEEEeccccCChHHHHHHH
Confidence 6999999999997 89999999999999999999988 589999999988787777778899888765555666789999
Q ss_pred HHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 131 LQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 131 l~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+..+. ..+.++++.||+||+++++++.+++.+.++
T Consensus 80 ~~~~~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~ 114 (160)
T PF12804_consen 80 LSQLP-SSEPVLVLPCDQPFLSPELLRRLLEALEKS 114 (160)
T ss_dssp HHTST-TSSEEEEEETTETTS-HHHHHHHHHHHHHT
T ss_pred HHhcc-cCCCcEEEeCCccccCHHHHHHHHHHHhcc
Confidence 98874 468999999999999999999999998754
No 28
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.83 E-value=1.3e-19 Score=157.32 Aligned_cols=193 Identities=18% Similarity=0.258 Sum_probs=127.9
Q ss_pred EEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCC--eEEecCCcCCCcHHH
Q 023786 52 GIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGA--DVIMTSESCRNGTER 126 (277)
Q Consensus 52 aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~--~vi~~~~~~~~g~~~ 126 (277)
+||||||.|+||+ +|++++++|+|||+|+++++.+++.+++|+|+++++....+....+. .+...... .+...+
T Consensus 2 aiIlAaG~s~R~~~~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s 80 (217)
T TIGR00453 2 AVIPAAGRGTRFGSGVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARAVPKIVAGG-DTRQDS 80 (217)
T ss_pred EEEEcCcccccCCCCCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCCcEEEeCCC-chHHHH
Confidence 7999999999997 79999999999999999999987569999999986544333222221 11111111 123356
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeecCC
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGL 206 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~~~ 206 (277)
+..|++.++ +.|++++++||+||+++++++++++.+.+. ++++. +.+. .+ .++. .+++|.+..+.+
T Consensus 81 l~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~--~~~~-----~~--~v~~-~~~~g~~~~~~~-- 146 (217)
T TIGR00453 81 VRNGLKALK-DAEWVLVHDAARPFVPKELLDRLLEALRKA-GAAIL--ALPV-----AD--TLKR-VEADGFIVETVD-- 146 (217)
T ss_pred HHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CcEEE--eEec-----cc--eEEE-EcCCCceeecCC--
Confidence 888888772 468999999999999999999999988654 43222 2222 11 1222 245565432211
Q ss_pred cCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCC-CCCCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 207 IPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
+ ......-+.|+|+.+.|..+... ....++..|+.+.++ ..|.+++.++.+..
T Consensus 147 ----r-------~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~g~~i~~~~~~~~ 200 (217)
T TIGR00453 147 ----R-------EGLWAAQTPQAFRTELLKKALARAKEEGFEITDDASAVE--KLGGKVALVEGDAL 200 (217)
T ss_pred ----h-------HHeEEEeCCCcccHHHHHHHHHHHHhcCCCCCcHHHHHH--HcCCCeEEEecCcc
Confidence 1 12333344799999998776532 233566667777665 56888888876543
No 29
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=4e-19 Score=170.89 Aligned_cols=209 Identities=19% Similarity=0.183 Sum_probs=143.6
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc-CCeEEecCCcC
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESC 120 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~-g~~vi~~~~~~ 120 (277)
|.++.|||||||.|+||+ +|+|++++|+|||+|+++++.++ +++++++++++ +++.+++.+. .+.++.. ..
T Consensus 1 m~~~~avIlAaG~g~Rl~~~~pK~l~pi~g~pli~~~l~~l~~~-gi~~iiiv~~~~~~~i~~~~~~~~~i~~~~~--~~ 77 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKSDLVKVMHPLAGRPMVSWPVAAAREA-GAGRIVLVVGHQAEKVREHFAGDGDVSFALQ--EE 77 (459)
T ss_pred CCcceEEEEcCCCCcccCCCCCceeceeCCccHHHHHHHHHHhc-CCCeEEEEECCCHHHHHHHhccCCceEEEec--CC
Confidence 345789999999999996 69999999999999999999988 68999998874 5566666543 3333332 33
Q ss_pred CCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCce
Q 023786 121 RNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGY 198 (277)
Q Consensus 121 ~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~ 198 (277)
+.|+ .++..+++.++...|.+++++||+||+++++++++++.+... ++.+++...+. .+|..+. +..+++|+
T Consensus 78 ~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~-~~~~~v~~~~~-----~~~~~~g~v~~d~~g~ 151 (459)
T PRK14355 78 QLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT-GAAVTVLTARL-----ENPFGYGRIVRDADGR 151 (459)
T ss_pred CCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc-CCcEEEEEEEc-----CCCCcCCEEEEcCCCC
Confidence 3454 468888888753357899999999999999999999988654 45566544433 3444433 34577888
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhh-ccCCCC----CCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~-~~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+..|.+++...+ .+..+.+.++|+|+|++++|.. +..... .+++..|.++ .+++.|.++..++.+.
T Consensus 152 v~~~~ek~~~~~-----~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~--~l~~~g~~v~~~~~~~ 222 (459)
T PRK14355 152 VLRIVEEKDATP-----EERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVA--MAAAEGLRCLAFPVAD 222 (459)
T ss_pred EEEEEEcCCCCh-----hHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHH--HHHHCCCeEEEEEcCC
Confidence 888876541111 1223468899999999987533 332221 2233223333 3557888888887643
No 30
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.83 E-value=3.8e-19 Score=170.23 Aligned_cols=209 Identities=16% Similarity=0.181 Sum_probs=138.3
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEE-ecCCcC
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVI-MTSESC 120 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi-~~~~~~ 120 (277)
||++.|||||||.|+||+ ||+|++++|+|||+|+++++.+. ++++|+|++++ +.+.+++..++..+. ..+...
T Consensus 3 ~~~~~aiILAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-gi~~ivvv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 81 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKSSLPKVLHPVAGRPMLAHVLAAAASL-GPSRVAVVVGPGAEAVAAAAAKIAPDAEIFVQKER 81 (446)
T ss_pred cccceEEEEcCCCCCccCCCCCcccCEECCchHHHHHHHHHHhC-CCCcEEEEECCCHHHHHHHhhccCCCceEEEcCCC
Confidence 567899999999999995 89999999999999999999987 58999988863 566666655432222 222233
Q ss_pred CCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEE
Q 023786 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (277)
Q Consensus 121 ~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~ 200 (277)
.+...++..+++.++...|.+++++||+||+++++++.+++.+.+..++ ++...+. .++..+..+..++|++.
T Consensus 82 ~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~--~i~~~~~-----~~~~~~g~~~~~~g~v~ 154 (446)
T PRK14353 82 LGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLADGADV--VVLGFRA-----ADPTGYGRLIVKGGRLV 154 (446)
T ss_pred CCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE--EEEEEEe-----CCCCcceEEEECCCeEE
Confidence 3444668888887742246799999999999999999999865543343 3333332 34444443333678888
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHH-hhccCCC----CCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL-KIYPGLH----PTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l-~~~~~~~----~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
.|.+++.+.+. +......++|+|.|+++.| +.+.... ..+++..|.++ .+++.|.+++.+..+
T Consensus 155 ~~~ek~~~~~~-----~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~--~l~~~g~~v~~~~~~ 222 (446)
T PRK14353 155 AIVEEKDASDE-----ERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVA--IARAEGLRVAVVEAP 222 (446)
T ss_pred EEEECCCCChH-----HhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHH--HHHHCCCeEEEEecC
Confidence 88776422110 1123578999999998765 3333221 12222223222 245788888888764
No 31
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=99.83 E-value=1.1e-18 Score=155.56 Aligned_cols=206 Identities=14% Similarity=0.125 Sum_probs=134.3
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc-------------
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF------------- 109 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~------------- 109 (277)
.|||||||.||||. ||+++|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++...
T Consensus 2 ~avIlAaG~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~-gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (260)
T TIGR01099 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEA-GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKE 80 (260)
T ss_pred eEEEEcccCcccCCCcccCCCceeEEECCEEHHHHHHHHHHhC-CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhH
Confidence 38999999999994 79999999999999999999987 79999999974 5555554310
Q ss_pred -----------CCeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCH-HHHHHHHHHHHcCCCcEEEEEee
Q 023786 110 -----------GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEP-EIIDGVVKALQAAPDAVFSTAVT 176 (277)
Q Consensus 110 -----------g~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~-~~i~~li~~~~~~~~~~v~~~~~ 176 (277)
+.++.+..+....|+ .++..+++.+. .+.++++.||+++... .+++++++.+.+....++++ .
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii~~--~ 156 (260)
T TIGR01099 81 ELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG--DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSIIAV--E 156 (260)
T ss_pred HHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC--CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEEEE--E
Confidence 123333323334555 45788888773 3669999999998765 48999999887543323332 2
Q ss_pred ecCCCCCCCCCceEEE-EC----CCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccC
Q 023786 177 SLKPEDAFDPNRVKCV-VD----NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEED 251 (277)
Q Consensus 177 ~~~~~~~~d~~~~~v~-~~----~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~ 251 (277)
... ..++..++++ .+ .+|++..|.+++.+. +..+...++|+|+|+++++..+...+.+.-...+.
T Consensus 157 ~~~---~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~-------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~~l 226 (260)
T TIGR01099 157 EVP---KEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPE-------EAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEIQL 226 (260)
T ss_pred ECC---hhhcccCceEEeccccCCceeEEEEEECCCCC-------CCCCceEEEEEEECCHHHHHHHHhCCCCCCCceeH
Confidence 221 1234445544 33 236888888876321 11346899999999999988875433221111111
Q ss_pred hHHHH-HHHcCCeeEEEEeeeE
Q 023786 252 LEQLK-VLENGYKMKVQQTYFT 272 (277)
Q Consensus 252 l~~l~-~le~g~~v~~~~~~~~ 272 (277)
.+.+. +++. .+++.++.++.
T Consensus 227 ~d~i~~l~~~-~~v~~~~~~g~ 247 (260)
T TIGR01099 227 TDALRKLLEK-ETVYAYKFKGK 247 (260)
T ss_pred HHHHHHHHhc-CCEEEEEcceE
Confidence 12233 3344 57888876654
No 32
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.83 E-value=3e-20 Score=162.13 Aligned_cols=189 Identities=24% Similarity=0.329 Sum_probs=122.3
Q ss_pred eEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHH---HHHHHHcCCeEEecCCcCCCc
Q 023786 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI---AECCQQFGADVIMTSESCRNG 123 (277)
Q Consensus 50 i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i---~~~~~~~g~~vi~~~~~~~~g 123 (277)
+.+||||||.|+||+ ||++++++|+|+|.|+++++.+.+.+++|+|++.++.+ .+++.+..+.++ .||
T Consensus 1 V~aIilAaG~G~R~g~~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~v~iv------~GG 74 (221)
T PF01128_consen 1 VAAIILAAGSGSRMGSGIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSKKKVKIV------EGG 74 (221)
T ss_dssp EEEEEEESS-STCCTSSS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHHTTEEEE------E--
T ss_pred CEEEEeCCccchhcCcCCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcCCCEEEe------cCC
Confidence 479999999999997 79999999999999999999998899999999986443 334444233332 255
Q ss_pred H---HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEE-EEeeecCCCCCCCCCceEEEECCCceE
Q 023786 124 T---ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS-TAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (277)
Q Consensus 124 ~---~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~-~~~~~~~~~~~~d~~~~~v~~~~~g~~ 199 (277)
. .|+++||+.+....|+|++|||.+||++++.|+++++..+++.+++++ +++.+ .++ ..+.+|.+
T Consensus 75 ~tR~~SV~ngL~~l~~~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~D----------Tik-~v~~~~~v 143 (221)
T PF01128_consen 75 ATRQESVYNGLKALAEDCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTD----------TIK-RVDDDGFV 143 (221)
T ss_dssp SSHHHHHHHHHHCHHCTSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SS----------EEE-EESTTSBE
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccc----------cEE-EEecCCcc
Confidence 4 468999999875568999999999999999999999998873344433 33222 223 23446655
Q ss_pred EeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCC-CCCccccChHHHHHHHcCCeeEEEEee
Q 023786 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 200 ~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~-s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
... + + + ...+..-.-..|+.+.|........ ....-+|+-..+ ...|.+++.++.+
T Consensus 144 ~~t---l-d--R-------~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDdasl~--~~~g~~v~~V~G~ 200 (221)
T PF01128_consen 144 TET---L-D--R-------SKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDASLV--EAAGKKVAIVEGS 200 (221)
T ss_dssp EEE---E-T--G-------GGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHHHHH--HHTTS-EEEEE--
T ss_pred ccc---C-C--H-------HHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHHHHH--HHcCCCEEEEeCC
Confidence 321 1 0 0 1244555668888877765543221 112223444433 4568899888754
No 33
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.82 E-value=6.1e-19 Score=154.23 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=128.2
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcC---CeEEecCCcC
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFG---ADVIMTSESC 120 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g---~~vi~~~~~~ 120 (277)
+|++.+||||||.|+||+ +|++++++|+|||+|+++++.+.+.+++|+|+++++.+.++.+.+. ..+......
T Consensus 1 ~~~~~~iILAaG~s~R~g~~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMGADRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAKDPKVTVVAGG- 79 (227)
T ss_pred CCceEEEEEcCccccccCCCCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhccCCceEEeCCc-
Confidence 477889999999999994 8999999999999999999988766899999999766444433221 112111111
Q ss_pred CCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEE
Q 023786 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI 200 (277)
Q Consensus 121 ~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~ 200 (277)
.+...++..|++.++ +.|.+++++||+||+++++++++++.+.+. ++.+.+ .++ .| .++.+ +.+|.+
T Consensus 80 ~~~~~sv~~~l~~~~-~~d~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~-----~~--~~~~v-~~~g~~- 146 (227)
T PRK00155 80 AERQDSVLNGLQALP-DDDWVLVHDAARPFLTPDDIDRLIEAAEET-GAAILA--VPV-----KD--TIKRS-DDGGGI- 146 (227)
T ss_pred chHHHHHHHHHHhCC-CCCEEEEccCccCCCCHHHHHHHHHHHhhC-CCEEEE--Eec-----cc--cEEEE-cCCCce-
Confidence 123456888888774 468999999999999999999999988654 443332 222 12 12333 444543
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCC-CCCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGL-HPTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~-~~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
.+.+ + + ......-+.|+|+.+.|..+... ....++.+|..+.+. ..|.+++.++.+.
T Consensus 147 --~~~~-~--r-------~~~~~~~~p~~f~~~~l~~~~~~~~~~~~~~~d~~~~~~--~~~~~i~~~~~~~ 204 (227)
T PRK00155 147 --VDTP-D--R-------SGLWAAQTPQGFRIELLREALARALAEGKTITDDASAVE--RLGKPVRLVEGRY 204 (227)
T ss_pred --eecC-C--h-------HHheeeeCCccchHHHHHHHHHHHHhcCCCcCcHHHHHH--HcCCCeEEEecCc
Confidence 2211 1 1 11334445899999888776532 112333445454443 4667777776543
No 34
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=99.82 E-value=3e-18 Score=150.34 Aligned_cols=199 Identities=18% Similarity=0.155 Sum_probs=133.7
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH----cCCeEEecCC
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTSE 118 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~----~g~~vi~~~~ 118 (277)
.+||||||.|+||. ||+|+|++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.+ .++.+++..+
T Consensus 2 ~~iIlAaG~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~-g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 80 (233)
T cd06425 2 KALILVGGYGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKA-GVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFSIE 80 (233)
T ss_pred cEEEecCCCccccCccccCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEEeeeCHHHHHHHHhcccccCCeEEEeccC
Confidence 38999999999995 79999999999999999999987 69999999973 555565543 4566665434
Q ss_pred cCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-ECC-
Q 023786 119 SCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDN- 195 (277)
Q Consensus 119 ~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~~- 195 (277)
....|+ .++..|...+....+.+++++||..+ ..+++++++.+++. ++..++.+.+. .++..++++ .++
T Consensus 81 ~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~g~v~~d~~ 152 (233)
T cd06425 81 TEPLGTAGPLALARDLLGDDDEPFFVLNSDVIC--DFPLAELLDFHKKH-GAEGTILVTKV-----EDPSKYGVVVHDEN 152 (233)
T ss_pred CCCCccHHHHHHHHHHhccCCCCEEEEeCCEee--CCCHHHHHHHHHHc-CCCEEEEEEEc-----CCccccCeEEEcCC
Confidence 444554 56888888875323558899999843 34578888888653 33344444443 233344443 455
Q ss_pred CceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 196 HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 196 ~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
+|+++.|.+++.+ ..+.+.++|+|+|++++|+.+...+ ...+ .|. +..+....++..++.++.
T Consensus 153 ~~~v~~~~ekp~~---------~~~~~~~~Giyi~~~~~l~~l~~~~-~~~~-~~~---~~~l~~~~~v~~~~~~g~ 215 (233)
T cd06425 153 TGRIERFVEKPKV---------FVGNKINAGIYILNPSVLDRIPLRP-TSIE-KEI---FPKMASEGQLYAYELPGF 215 (233)
T ss_pred CCEEEEEEECCCC---------CCCCEEEEEEEEECHHHHHhcccCc-ccch-hhh---HHHHHhcCCEEEEeeCCE
Confidence 6899888776521 1246789999999999998775422 1121 132 332333347887776543
No 35
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.81 E-value=1.5e-18 Score=166.45 Aligned_cols=206 Identities=19% Similarity=0.223 Sum_probs=136.9
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRN 122 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~ 122 (277)
|++.|||||||.|+||+ ||+|++++|+|||+|+++++.+. ++++++|++++ +++.+++.. +..++.. ....
T Consensus 1 m~~~avIlAaG~g~Rl~~~~pK~ll~i~Gkpli~~~l~~l~~~-gi~~iivvv~~~~~~i~~~~~~-~~~~~~~--~~~~ 76 (458)
T PRK14354 1 MNRYAIILAAGKGTRMKSKLPKVLHKVCGKPMVEHVVDSVKKA-GIDKIVTVVGHGAEEVKEVLGD-RSEFALQ--EEQL 76 (458)
T ss_pred CCceEEEEeCCCCcccCCCCChhhCEeCCccHHHHHHHHHHhC-CCCeEEEEeCCCHHHHHHHhcC-CcEEEEc--CCCC
Confidence 67889999999999995 79999999999999999999987 68998888763 555555432 3444433 2233
Q ss_pred cH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEE-EECCCceEE
Q 023786 123 GT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-VVDNHGYAI 200 (277)
Q Consensus 123 g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v-~~~~~g~~~ 200 (277)
|+ .++.++++.++...|.+++++||+||+++++++++++.+++. ++.+++..... .+|..+.. ..+++|++.
T Consensus 77 g~~~al~~a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~~-~~~~t~~~~~~-----~~~~~~g~v~~d~~~~V~ 150 (458)
T PRK14354 77 GTGHAVMQAEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEEH-KAAATILTAIA-----ENPTGYGRIIRNENGEVE 150 (458)
T ss_pred CHHHHHHHHHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHhc-CCceEEEEEEc-----CCCCCceEEEEcCCCCEE
Confidence 44 568888888753247899999999999999999999988653 33333333322 24444433 357778887
Q ss_pred eeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHH-hhccCCCC----CCCccccChHHHHHHHcCCeeEEEEee
Q 023786 201 YFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL-KIYPGLHP----TPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 201 ~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l-~~~~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
.|.+++...+ .+......++|+|+|+++.| +.+..... .+++..|.++. +++.|.++..+..+
T Consensus 151 ~~~ek~~~~~-----~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~--l~~~g~~v~~~~~~ 218 (458)
T PRK14354 151 KIVEQKDATE-----EEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEI--LKNEGEKVGAYQTE 218 (458)
T ss_pred EEEECCCCCh-----HHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHH--HHHCCCeEEEEecC
Confidence 7765541111 01124678999999998754 44432211 22322233332 45677888887765
No 36
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.81 E-value=2.2e-18 Score=164.08 Aligned_cols=200 Identities=23% Similarity=0.252 Sum_probs=131.9
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHc--CCeEEecCCcC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF--GADVIMTSESC 120 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~--g~~vi~~~~~~ 120 (277)
|++.|||||||.||||+ ||+|+|++|+|||+|+++.+.+. +++|+|+++ .+.+.+++.++ +++++..++..
T Consensus 1 m~~~aiIlAaG~GtRl~~~~pK~Llpi~gkPli~~~i~~l~~~--~~~i~Ivv~~~~~~i~~~~~~~~~~v~~~~~~~~~ 78 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKSSLPKVLHTICGKPMLFYILKEAFAI--SDDVHVVLHHQKERIKEAVLEYFPGVIFHTQDLEN 78 (430)
T ss_pred CCccEEEEcCCCCccCCCCCCceeCEECCccHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHHhcCCceEEEEecCcc
Confidence 56789999999999996 79999999999999999999875 577877776 46677776654 45555544333
Q ss_pred CCcHHH-HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceE
Q 023786 121 RNGTER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (277)
Q Consensus 121 ~~g~~~-i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~ 199 (277)
..|+.. +.. +....|.+++++||+||+++++++++++ ...++ ++.+.+. .+|..++++...+|++
T Consensus 79 ~~gt~~al~~----~~~~~d~vlv~~gD~p~~~~~~l~~l~~---~~~~~--~v~~~~~-----~~~~~~g~v~~d~g~v 144 (430)
T PRK14359 79 YPGTGGALMG----IEPKHERVLILNGDMPLVEKDELEKLLE---NDADI--VMSVFHL-----ADPKGYGRVVIENGQV 144 (430)
T ss_pred CCCcHHHHhh----cccCCCeEEEEECCccCCCHHHHHHHHh---CCCCE--EEEEEEc-----CCCccCcEEEEcCCeE
Confidence 344432 332 2223578999999999999988887764 22333 3333333 3454454444456888
Q ss_pred EeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccC-CC----CCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG-LH----PTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 200 ~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~-~~----~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
..|.+++.. .. .+......++|+|+|++++|..+.. .. ..+++..|.++ .+++.|.++..+..+
T Consensus 145 ~~i~e~~~~-~~----~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~--~l~~~g~~v~~~~~~ 213 (430)
T PRK14359 145 KKIVEQKDA-NE----EELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIA--LAIEKGETIKAVFVD 213 (430)
T ss_pred EEEEECCCC-Cc----ccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHH--HHHHcCCeEEEEEcC
Confidence 777654311 10 1112468899999999999986632 11 12233333333 456788888888765
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=99.81 E-value=7.4e-18 Score=147.68 Aligned_cols=200 Identities=21% Similarity=0.271 Sum_probs=134.7
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cCCeEEecCCc
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSES 119 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g~~vi~~~~~ 119 (277)
.|||||||.|+||+ ||+|++++|+|||+|+++.+.+. ++++|+|+++. +.+.+++.. ++.++.+..+.
T Consensus 2 ~avIlAaG~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 80 (236)
T cd04189 2 KGLILAGGKGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREA-GIEDIGIVVGPTGEEIKEALGDGSRFGVRITYILQE 80 (236)
T ss_pred eEEEECCCccccccccccCCCceeeEECCcchHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHhcchhhcCCeEEEEECC
Confidence 49999999999995 79999999999999999999987 69999999874 566666643 35555443333
Q ss_pred CCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCce
Q 023786 120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (277)
Q Consensus 120 ~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~ 198 (277)
...|+ .++..|+..+. .+.+++++||+.+ + .++.++++.+... ++.+++.+.+. .++..++++.-.+++
T Consensus 81 ~~~g~~~sl~~a~~~i~--~~~~li~~~D~~~-~-~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~g~~~~d~~~ 150 (236)
T cd04189 81 EPLGLAHAVLAARDFLG--DEPFVVYLGDNLI-Q-EGISPLVRDFLEE-DADASILLAEV-----EDPRRFGVAVVDDGR 150 (236)
T ss_pred CCCChHHHHHHHHHhcC--CCCEEEEECCeec-C-cCHHHHHHHHHhc-CCceEEEEEEC-----CCcccceEEEEcCCe
Confidence 33444 56888888774 3457889999965 4 4677888877543 33344444443 234444444323457
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCC---CCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~---s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
+..|.+++.. ..+...++|+|.|++++++.+....+ .+++..|.++ .+++.|.++++++.+..
T Consensus 151 v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~d~~~--~~i~~g~~v~~~~~~~~ 216 (236)
T cd04189 151 IVRLVEKPKE---------PPSNLALVGVYAFTPAIFDAISRLKPSWRGELEITDAIQ--WLIDRGRRVGYSIVTGW 216 (236)
T ss_pred EEEEEECCCC---------CCCCEEEEEEEEeCHHHHHHHHhcCCCCCCeEEHHHHHH--HHHHcCCcEEEEEcCce
Confidence 7777665421 12457899999999999987643222 2233223333 35578888998887654
No 38
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.80 E-value=8e-19 Score=148.71 Aligned_cols=180 Identities=22% Similarity=0.251 Sum_probs=130.8
Q ss_pred CceEEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHH---HHHHcCCeEEecCCcCCCc
Q 023786 48 SRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAE---CCQQFGADVIMTSESCRNG 123 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~---~~~~~g~~vi~~~~~~~~g 123 (277)
+++.+||||||.||||+ +|+|.+++|+|++.|+++.+.+. +++++||+++++.... .....++.++.+++..+|.
T Consensus 4 ~~v~~VvLAAGrssRmG~~KlLap~~g~plv~~~~~~a~~a-~~~~vivV~g~~~~~~~~a~~~~~~~~~v~npd~~~Gl 82 (199)
T COG2068 4 STVAAVVLAAGRSSRMGQPKLLAPLDGKPLVRASAETALSA-GLDRVIVVTGHRVAEAVEALLAQLGVTVVVNPDYAQGL 82 (199)
T ss_pred cceEEEEEcccccccCCCcceecccCCCcHHHHHHHHHHhc-CCCeEEEEeCcchhhHHHhhhccCCeEEEeCcchhhhH
Confidence 46889999999999997 89999999999999999999987 6999999999752222 2233578888888777777
Q ss_pred HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeee
Q 023786 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFS 203 (277)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~ 203 (277)
.+|+..|++....+.|.++++.||||+++++++.++++.+... . .+..+ ...+..|++++|+
T Consensus 83 s~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~-~-~~v~p----------------~~~g~rG~Pv~~~ 144 (199)
T COG2068 83 STSLKAGLRAADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR-G-AAVRP----------------VYGGARGHPVLLS 144 (199)
T ss_pred hHHHHHHHHhcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc-C-ceeee----------------eccCCcCCceeec
Confidence 7899999999864346999999999999999999999998765 3 22221 1245668999998
Q ss_pred cCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc------CCCCCCCccccChHHHHHH
Q 023786 204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP------GLHPTPLQLEEDLEQLKVL 258 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~------~~~~s~~~~~d~l~~l~~l 258 (277)
+...+..... +.. .| -+..++... ...+..+-|+|+.+++.-.
T Consensus 145 ~~~~~~l~~l------~GD--~G----~r~ll~~~~~~~~~V~~~~g~llDVDTped~~~a 193 (199)
T COG2068 145 KDLFPALARL------SGD--VG----ARQLLEEGGLPLVEVEVDAGVLLDVDTPEDLARA 193 (199)
T ss_pred hhHHHHHhhc------CCc--hh----HHHHHHhcCcceEeeccCCceEecCCCHHHHHHH
Confidence 7654332110 011 11 122333322 2236678888999887533
No 39
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=99.80 E-value=9e-18 Score=150.23 Aligned_cols=204 Identities=18% Similarity=0.185 Sum_probs=133.6
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH--------------
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-------------- 108 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-------------- 108 (277)
.|||||||.||||. ||+++|++|+|||+|+++.+.++ ++++|+|++++ +.+.+++..
T Consensus 2 kaiIlAaG~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (267)
T cd02541 2 KAVIPAAGLGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAA-GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKT 80 (267)
T ss_pred eEEEEcCCCCccCCCcccCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccH
Confidence 49999999999995 79999999999999999999987 79999999974 445554421
Q ss_pred ----------cCCeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHH-HHHHHHHHHHcCCCcEEEEEee
Q 023786 109 ----------FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPE-IIDGVVKALQAAPDAVFSTAVT 176 (277)
Q Consensus 109 ----------~g~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~-~i~~li~~~~~~~~~~v~~~~~ 176 (277)
.+.++.+..+....|+ .++..+++.++ .+.++++.||+++...+ +++++++.+.+....++.+ .
T Consensus 81 ~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~--~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~--~ 156 (267)
T cd02541 81 DLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG--DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAV--E 156 (267)
T ss_pred HHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC--CCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEE--E
Confidence 1334433333334555 46888888884 36799999999887654 7999999886543333332 2
Q ss_pred ecCCCCCCCCCceEEE-ECC----CceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC---CCcc
Q 023786 177 SLKPEDAFDPNRVKCV-VDN----HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PLQL 248 (277)
Q Consensus 177 ~~~~~~~~d~~~~~v~-~~~----~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s---~~~~ 248 (277)
.... .++..++++ .++ ++++..|.+++.+. ...+...++|+|+|+++++..+.....+ +++.
T Consensus 157 ~~~~---~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~-------~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~ 226 (267)
T cd02541 157 EVPP---EDVSKYGIVKGEKIDGDVFKVKGLVEKPKPE-------EAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQL 226 (267)
T ss_pred EcCh---hcCccceEEEeecCCCCceEEeEEEECCCCC-------CCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEH
Confidence 2211 133334443 343 24777787765321 1134688999999999999877542222 2222
Q ss_pred ccChHHHHHHHcCCeeEEEEeeeE
Q 023786 249 EEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 249 ~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
.|.++ .+++.+ ++.++..++.
T Consensus 227 ~d~i~--~l~~~~-~v~~~~~~g~ 247 (267)
T cd02541 227 TDAIA--KLLEEE-PVYAYVFEGK 247 (267)
T ss_pred HHHHH--HHHhcC-CEEEEEeeeE
Confidence 22222 234555 8888887653
No 40
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.80 E-value=9.2e-19 Score=155.90 Aligned_cols=118 Identities=17% Similarity=0.235 Sum_probs=92.8
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchH---HHHHHHHcCCeEEecCCcCC
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCR 121 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~---i~~~~~~~g~~vi~~~~~~~ 121 (277)
+++.+||||||.|+||+ ||++++++|+|+|+|+++++.+...+++|+|+++++. +.+...+++..+.+..+ -.
T Consensus 23 ~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~~~~~i~~v~g-g~ 101 (252)
T PLN02728 23 KSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVENIDVPLKFALP-GK 101 (252)
T ss_pred CceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHhcCCceEEcCC-CC
Confidence 35789999999999996 8999999999999999999998667999999998542 22333445554443321 11
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+...++++|++.+..+.+.|+++|+++||++++.++++++...+.
T Consensus 102 ~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 102 ERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred chHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 234679999998854568899999999999999999999988764
No 41
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.80 E-value=4.2e-18 Score=162.87 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=137.3
Q ss_pred EEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCcH-
Q 023786 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGT- 124 (277)
Q Consensus 51 ~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g~- 124 (277)
.|||||||.||||+ ||+|++++|+|||+|+++++.++ ++++++|++++ +.+.+++.++++.++..++ +.|+
T Consensus 2 ~aiIlAaG~g~R~~~~~pK~l~~i~gkpli~~~l~~l~~~-g~~~iiiv~~~~~~~i~~~~~~~~i~~~~~~~--~~G~~ 78 (451)
T TIGR01173 2 SVVILAAGKGTRMKSDLPKVLHPLAGKPMLEHVIDAARAL-GPQKIHVVYGHGAEQVRKALANRDVNWVLQAE--QLGTG 78 (451)
T ss_pred eEEEEcCCCCcccCCCCchhhceeCCccHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcCCCcEEEEcCC--CCchH
Confidence 39999999999995 79999999999999999999987 58898888764 5676777666776655432 2344
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCceEEeee
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIYFS 203 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~~~~f~ 203 (277)
.+++++++.++. .+.+++++||+||+++++++++++.+.+. + .++...+. .++..+. +..+++|++..|.
T Consensus 79 ~ai~~a~~~l~~-~~~~lv~~~D~p~i~~~~~~~l~~~~~~~-~--~~~~~~~~-----~~~~~~g~v~~d~~g~v~~~~ 149 (451)
T TIGR01173 79 HAVLQALPFLPD-DGDVLVLYGDVPLISAETLERLLEAHRQN-G--ITLLTAKL-----PDPTGYGRIIRENDGKVTAIV 149 (451)
T ss_pred HHHHHHHHhcCC-CCcEEEEECCcCCcCHHHHHHHHHHHhhC-C--EEEEEEec-----CCCCCCCEEEEcCCCCEEEEE
Confidence 568888888852 36799999999999999999999888654 3 22222332 2333332 3456778887776
Q ss_pred cCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhh-ccCCCC----CCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 204 RGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI-YPGLHP----TPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~-~~~~~~----s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
+++-..+ .+......++|+|+|+++.|.. +..... .+++..+.+. .+++.|++++.+..+.
T Consensus 150 ek~~~~~-----~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~--~l~~~g~~v~~~~~~~ 215 (451)
T TIGR01173 150 EDKDANA-----EQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIA--LAVADGETVRAVQVDD 215 (451)
T ss_pred EcCCCCh-----HHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHH--HHHHCCCeEEEEEcCC
Confidence 6542111 1112357899999999998644 332211 2222223222 3567888888887543
No 42
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=4.5e-18 Score=162.92 Aligned_cols=175 Identities=16% Similarity=0.210 Sum_probs=125.4
Q ss_pred eEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc-CCeEEecCCcCCCc
Q 023786 50 VVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-GADVIMTSESCRNG 123 (277)
Q Consensus 50 i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~-g~~vi~~~~~~~~g 123 (277)
+.+||||||+|+||+ ||+|++++|+|||+|+++++.+. ++++++|+++. +.+.+++.++ ++.++.. ....|
T Consensus 2 ~~~iIlAaG~gsR~~~~~pK~ll~v~gkpli~~~l~~l~~~-g~~~iivvv~~~~~~i~~~~~~~~~i~~v~~--~~~~G 78 (450)
T PRK14360 2 LAVAILAAGKGTRMKSSLPKVLHPLGGKSLVERVLDSCEEL-KPDRRLVIVGHQAEEVEQSLAHLPGLEFVEQ--QPQLG 78 (450)
T ss_pred ceEEEEeCCCCccCCCCCChhcCEECChhHHHHHHHHHHhC-CCCeEEEEECCCHHHHHHHhcccCCeEEEEe--CCcCC
Confidence 468999999999996 79999999999999999999987 57888877764 4566666543 3555542 22344
Q ss_pred -HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCceEEe
Q 023786 124 -TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGYAIY 201 (277)
Q Consensus 124 -~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~~~~ 201 (277)
..++..+++.++...+.+++++||+||+++++++++++.+++. ++.+++...+. .+|..+. +..+++|++..
T Consensus 79 ~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~-~~~~~~~~~~~-----~~~~~~g~~~~d~~g~v~~ 152 (450)
T PRK14360 79 TGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS-NADVTLLTARL-----PNPKGYGRVFCDGNNLVEQ 152 (450)
T ss_pred cHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc-CCcEEEEEEec-----CCCCCccEEEECCCCCEEE
Confidence 3567788877753235689999999999999999999988764 34445433332 3444433 34578899988
Q ss_pred eecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc
Q 023786 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (277)
Q Consensus 202 f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 238 (277)
|.+++-+.+. +..+.+.++|+|.|+++.|..+
T Consensus 153 ~~ek~~~~~~-----~~~~~~~~~Giy~f~~~~l~~~ 184 (450)
T PRK14360 153 IVEDRDCTPA-----QRQNNRINAGIYCFNWPALAEV 184 (450)
T ss_pred EEECCCCChh-----HhcCcEEEEEEEEEEHHHHHHH
Confidence 8776532211 1235689999999999877654
No 43
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.79 E-value=1.4e-17 Score=144.79 Aligned_cols=167 Identities=21% Similarity=0.226 Sum_probs=120.8
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH--cCCeEEecCCc-C
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ--FGADVIMTSES-C 120 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~--~g~~vi~~~~~-~ 120 (277)
|||||||.|+||. ||+++|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.. +++.+.+..+. .
T Consensus 2 aiIlaaG~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~i~~~~~~~~ 80 (221)
T cd06422 2 AMILAAGLGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAA-GIRRIVVNTHHLADQIEAHLGDSRFGLRITISDEPDE 80 (221)
T ss_pred EEEEcCCCCCccccccCCCCCceeeECCEEHHHHHHHHHHHC-CCCEEEEEccCCHHHHHHHHhcccCCceEEEecCCCc
Confidence 8999999999995 69999999999999999999988 69999999974 566666654 56666554433 2
Q ss_pred CCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc-CCCcEEEEEeeecCCCCCCCCCceE-EEECCCc
Q 023786 121 RNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA-APDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHG 197 (277)
Q Consensus 121 ~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~-~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g 197 (277)
..|+ .++..++..+. .+.+++++||+++ ..++.++++.+.+ ..++.+++...+. .++..++ +..+.+|
T Consensus 81 ~~g~~~~l~~~~~~~~--~~~~lv~~~D~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~v~~d~~~ 151 (221)
T cd06422 81 LLETGGGIKKALPLLG--DEPFLVVNGDILW--DGDLAPLLLLHAWRMDALLLLLPLVRN-----PGHNGVGDFSLDADG 151 (221)
T ss_pred ccccHHHHHHHHHhcC--CCCEEEEeCCeee--CCCHHHHHHHHHhccCCCceEEEEEEc-----CCCCCcceEEECCCC
Confidence 3344 56888888884 3679999999965 3468888887752 2345555543332 2233333 3467778
Q ss_pred eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccC
Q 023786 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG 240 (277)
Q Consensus 198 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 240 (277)
.+..|.+++ .....++|+|+|+++.+..+..
T Consensus 152 ~v~~~~~~~------------~~~~~~~Giyi~~~~~l~~l~~ 182 (221)
T cd06422 152 RLRRGGGGA------------VAPFTFTGIQILSPELFAGIPP 182 (221)
T ss_pred cEeecccCC------------CCceEEEEEEEEcHHHHhhCCc
Confidence 887665443 1257899999999999987743
No 44
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.79 E-value=5.2e-19 Score=154.18 Aligned_cols=125 Identities=23% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHH----cCCeEEecCCc
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQ----FGADVIMTSES 119 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~----~g~~vi~~~~~ 119 (277)
+|++.+||||||.|+||+ ||++++++|+||++|+++.+...+.+++|+|+++.++...+.+- .+-.+. .
T Consensus 2 ~~~~~~vilAaG~G~R~~~~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~v~----~ 77 (230)
T COG1211 2 RMMVSAVILAAGFGSRMGNPVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLSADKRVE----V 77 (230)
T ss_pred CceEEEEEEcCccccccCCCCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhccCCeEE----E
Confidence 467889999999999997 79999999999999999999999999999999986443322211 111222 1
Q ss_pred CCCcH---HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEe
Q 023786 120 CRNGT---ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (277)
Q Consensus 120 ~~~g~---~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~ 175 (277)
..||. .++++|++.+.. +.++|++||+.+||++.+.|+++++...+...++.++++
T Consensus 78 v~GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~~~~aai~alpv 137 (230)
T COG1211 78 VKGGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELADKYGAAILALPV 137 (230)
T ss_pred ecCCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhccCCcEEEEeec
Confidence 23665 458899998863 479999999999999999999999544443233334333
No 45
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=99.79 E-value=1e-17 Score=149.20 Aligned_cols=174 Identities=14% Similarity=0.157 Sum_probs=122.4
Q ss_pred EEEecCC--CCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH----cCCeEEecC
Q 023786 52 GIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ----FGADVIMTS 117 (277)
Q Consensus 52 aIIlAaG--~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~----~g~~vi~~~ 117 (277)
||||||| .||||. ||+|+|++|+|||+|+++.+.+..++++|+|+++. +.+.+++.. .+..+.+..
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~~~ 80 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRYLQ 80 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEEec
Confidence 6899999 899995 79999999999999999999983369999999973 556666542 345554443
Q ss_pred CcCCCcHH-HHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-EC
Q 023786 118 ESCRNGTE-RCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VD 194 (277)
Q Consensus 118 ~~~~~g~~-~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~ 194 (277)
+....|+. ++..+.+.+.. ..+.++++.||.++ ..+++.+++.++++ ++.+++...+... .++..++++ .+
T Consensus 81 ~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~--~~dl~~~~~~h~~~-~~~~tl~~~~~~~---~~~~~yg~v~~d 154 (257)
T cd06428 81 EYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCC--DFPLQELLEFHKKH-GASGTILGTEASR---EQASNYGCIVED 154 (257)
T ss_pred CCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeec--CCCHHHHHHHHHHc-CCCEEEEEEEccc---cccccccEEEEe
Confidence 44445553 46777777642 24679999999964 34799999988654 3444544443311 234444444 46
Q ss_pred -CCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccC
Q 023786 195 -NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPG 240 (277)
Q Consensus 195 -~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 240 (277)
++|++..|.+++.. ..+.+.++|+|+|++++++.+..
T Consensus 155 ~~~g~v~~~~Ekp~~---------~~~~~~~~Giyi~~~~~~~~i~~ 192 (257)
T cd06428 155 PSTGEVLHYVEKPET---------FVSDLINCGVYLFSPEIFDTIKK 192 (257)
T ss_pred CCCCeEEEEEeCCCC---------cccceEEEEEEEECHHHHHHHhh
Confidence 67889888876521 13568999999999999987754
No 46
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.79 E-value=1.8e-18 Score=145.49 Aligned_cols=116 Identities=22% Similarity=0.336 Sum_probs=92.4
Q ss_pred eEEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCch--HHHHHHHHcCCeEEecCCcCCCcHHH
Q 023786 50 VVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDE--KIAECCQQFGADVIMTSESCRNGTER 126 (277)
Q Consensus 50 i~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~--~i~~~~~~~g~~vi~~~~~~~~g~~~ 126 (277)
+.+||||||+|+||+ +|++++++|+|||+|+++++... ++++|+|+++++ .+.+.+..+++.++..+....|...+
T Consensus 1 ~~~vIlAgG~s~R~g~~K~l~~~~g~~li~~~i~~l~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 79 (186)
T cd04182 1 IAAIILAAGRSSRMGGNKLLLPLDGKPLLRHALDAALAA-GLSRVIVVLGAEADAVRAALAGLPVVVVINPDWEEGMSSS 79 (186)
T ss_pred CeEEEECCCCCCCCCCCceeCeeCCeeHHHHHHHHHHhC-CCCcEEEECCCcHHHHHHHhcCCCeEEEeCCChhhCHHHH
Confidence 358999999999997 89999999999999999999887 589999999753 33333444566555544333344567
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+..|++.+....|++++++||+||++++.++.+++.+.++
T Consensus 80 i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 119 (186)
T cd04182 80 LAAGLEALPADADAVLILLADQPLVTAETLRALIDAFRED 119 (186)
T ss_pred HHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhC
Confidence 8999988743368999999999999999999999987643
No 47
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.79 E-value=1.4e-17 Score=154.85 Aligned_cols=199 Identities=19% Similarity=0.239 Sum_probs=135.9
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc---hHHHHHHHH---cCCeEEecCCc
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQ---FGADVIMTSES 119 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~---~~i~~~~~~---~g~~vi~~~~~ 119 (277)
|||||||.||||. ||+|++++|+|||+|+++.+.+. ++++|+|+++. +.+.+++.. ++.++.+..+.
T Consensus 2 aiIlAaG~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (353)
T TIGR01208 2 ALILAAGKGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEA-GITDIGIVVGPVTGEEIKEIVGEGERFGAKITYIVQG 80 (353)
T ss_pred EEEECCcCcCccCccccCCCccccEECCEeHHHHHHHHHHHC-CCCEEEEEeCCCCHHHHHHHHhcccccCceEEEEECC
Confidence 8999999999995 79999999999999999999988 69999998875 456666642 34444332223
Q ss_pred CCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEE-ECCCc
Q 023786 120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCV-VDNHG 197 (277)
Q Consensus 120 ~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~-~~~~g 197 (277)
...|+ .++..+++.++ .+.++++.||+++ ..++.++++.+.++ ++.+++.+.+. .++..+.++ .+.++
T Consensus 81 ~~~G~~~al~~a~~~l~--~~~~li~~gD~~~--~~~l~~l~~~~~~~-~~d~ti~~~~~-----~~~~~~g~~~~~~~~ 150 (353)
T TIGR01208 81 EPLGLAHAVYTARDFLG--DDDFVVYLGDNLI--QDGISRFVKSFEEK-DYDALILLTKV-----RDPTAFGVAVLEDGK 150 (353)
T ss_pred CCCCHHHHHHHHHHhcC--CCCEEEEECCeec--CccHHHHHHHHHhc-CCCcEEEEEEC-----CChhhCeEEEEcCCC
Confidence 34455 56888888874 3458889999976 36789999888653 34444444443 345444443 34456
Q ss_pred eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCC---CCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 198 YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP---TPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 198 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~---s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
++..|.+++.. ..+...++|+|+|++.+++.+....+ .+++..|.++ .+++.|.++.++..+..
T Consensus 151 ~v~~~~ekp~~---------~~~~~~~~Giy~~~~~l~~~l~~~~~~~~~e~~l~d~l~--~l~~~g~~v~~~~~~g~ 217 (353)
T TIGR01208 151 RILKLVEKPKE---------PPSNLAVVGLYMFRPLIFEAIKNIKPSWRGELEITDAIQ--WLIEKGYKVGGSKVTGW 217 (353)
T ss_pred cEEEEEECCCC---------CCccceEEEEEEECHHHHHHHHhcCCCCCCcEEHHHHHH--HHHHcCCeEEEEEeCcE
Confidence 78777665421 12468899999999988877654332 2333223333 24578888988887654
No 48
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=99.79 E-value=2.3e-17 Score=150.68 Aligned_cols=202 Identities=13% Similarity=0.147 Sum_probs=132.2
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---c----------
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---F---------- 109 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~---------- 109 (277)
.+||||||.|+||. ||+++|++|+|+|+|+++.+.++ ++++|+|+++. +.+.+++.. +
T Consensus 10 ~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~-gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~ 88 (302)
T PRK13389 10 KAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAA-GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKR 88 (302)
T ss_pred EEEEECCcCCccCCCccCCCCceeeEECCEEHHHHHHHHHHHC-CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhh
Confidence 39999999999994 79999999999999999999988 79999999974 556666532 0
Q ss_pred ------------CCeEEecCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCccc------CCHHHHHHHHHHHHcCCCcE
Q 023786 110 ------------GADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPL------IEPEIIDGVVKALQAAPDAV 170 (277)
Q Consensus 110 ------------g~~vi~~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~------i~~~~i~~li~~~~~~~~~~ 170 (277)
+..+.+..+....|+. .+..+.+.+. .+.++++.||.++ +...++..+++.+.+....
T Consensus 89 ~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~--~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~- 165 (302)
T PRK13389 89 QLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG--DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS- 165 (302)
T ss_pred HHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC--CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-
Confidence 1222222233445664 4677777663 3568999999975 2457889999988654332
Q ss_pred EEEEeeecCCCCCCCCCceEEEE-C-------CCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCC
Q 023786 171 FSTAVTSLKPEDAFDPNRVKCVV-D-------NHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH 242 (277)
Q Consensus 171 v~~~~~~~~~~~~~d~~~~~v~~-~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~ 242 (277)
++.+.+. .++..++++. + .++++..|.++|.+. +..+.+.++|+|+|++++++.+...+
T Consensus 166 -tl~~~~~-----~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~-------~~~s~~~~~GiYi~~~~il~~l~~~~ 232 (302)
T PRK13389 166 -QIMVEPV-----ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKAD-------VAPSNLAIVGRYVLSADIWPLLAKTP 232 (302)
T ss_pred -EEEEEEc-----ccCCcceEEEecCcccccCCcceEEEEEECCCCC-------CCCccEEEEEEEEECHHHHHHHHhCC
Confidence 2333332 3455666552 2 235687887775321 11246899999999999998775433
Q ss_pred CCC---CccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 243 PTP---LQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 243 ~s~---~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
... ++..|.++. +++ +.++..+..++.
T Consensus 233 ~~~~~e~~l~d~i~~--l~~-~~~v~~~~~~G~ 262 (302)
T PRK13389 233 PGAGDEIQLTDAIDM--LIE-KETVEAYHMKGK 262 (302)
T ss_pred CCCCCeeeHHHHHHH--HHH-cCCEEEEEeeeE
Confidence 222 222232222 334 457777776543
No 49
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.79 E-value=2.2e-17 Score=142.23 Aligned_cols=198 Identities=22% Similarity=0.275 Sum_probs=132.4
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cCCeEEecCCcC
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSESC 120 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g~~vi~~~~~~ 120 (277)
|||||||.|+||. +|++++++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.. ++..+.+..+..
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~-g~~~i~vv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARA-GIDEIILVVGYLGEQIEEYFGDGSKFGVNIEYVVQEE 79 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCeeHHHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHcChhhcCceEEEEeCCC
Confidence 6899999999995 79999999999999999999987 59999999974 556666543 345554332333
Q ss_pred CCc-HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceE-EEECCCce
Q 023786 121 RNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVK-CVVDNHGY 198 (277)
Q Consensus 121 ~~g-~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~-v~~~~~g~ 198 (277)
..| ..++..+++.+ ..+.+++++||+ +++ .++.++++.+.+. ++.+++.+.+. .++..++ +..+++|+
T Consensus 80 ~~g~~~al~~~~~~~--~~~~~lv~~~D~-~~~-~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~v~~d~~~~ 149 (217)
T cd04181 80 PLGTAGAVRNAEDFL--GDDDFLVVNGDV-LTD-LDLSELLRFHREK-GADATIAVKEV-----EDPSRYGVVELDDDGR 149 (217)
T ss_pred CCccHHHHHHhhhhc--CCCCEEEEECCe-ecC-cCHHHHHHHHHhc-CCCEEEEEEEc-----CCCCcceEEEEcCCCc
Confidence 344 45688888877 357799999999 444 4677888777653 33344444442 1333333 44677788
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCC-CCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHP-TPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~-s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
+..|.+++.. ......++|+|+|++++++.+..... ......| .+..+-...++++++.+..
T Consensus 150 v~~~~ek~~~---------~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~---~~~~l~~~~~v~~~~~~g~ 212 (217)
T cd04181 150 VTRFVEKPTL---------PESNLANAGIYIFEPEILDYIPEILPRGEDELTD---AIPLLIEEGKVYGYPVDGY 212 (217)
T ss_pred EEEEEECCCC---------CCCCEEEEEEEEECHHHHHhhhhcCCcccccHHH---HHHHHHhcCCEEEEEcCCE
Confidence 9888776521 11368999999999999876654322 1111112 2332223367888877543
No 50
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.78 E-value=4e-18 Score=147.67 Aligned_cols=194 Identities=20% Similarity=0.277 Sum_probs=124.9
Q ss_pred EEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHH--Hc--CCeEEecCCcCCCc
Q 023786 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ--QF--GADVIMTSESCRNG 123 (277)
Q Consensus 51 ~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~--~~--g~~vi~~~~~~~~g 123 (277)
.+||||||.|+||+ +|++++++|+|||+|+++++.+.+.+++|+|+++++....... .+ ...+....+. .+.
T Consensus 2 ~~vILAaG~s~R~~~~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (218)
T cd02516 2 AAIILAAGSGSRMGADIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAKYGLSKVVKIVEGG-ATR 80 (218)
T ss_pred EEEEECCcccccCCCCCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHhcccCCCeEEECCc-hHH
Confidence 58999999999997 6999999999999999999998755899999998654332221 11 1122221111 234
Q ss_pred HHHHHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEee
Q 023786 124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYF 202 (277)
Q Consensus 124 ~~~i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f 202 (277)
..++..|++.++ .+.+++++++||+||+++++++++++.+.+. ++.+++ .++ .++ ++ ..+.+|.+..+
T Consensus 81 ~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~-~~~~~~--~~~-----~~~--~~-~~~~~g~~~~~ 149 (218)
T cd02516 81 QDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY-GAAIPA--VPV-----TDT--IK-RVDDDGVVVET 149 (218)
T ss_pred HHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC-CcEEEE--Eec-----ccc--EE-EecCCCceeec
Confidence 567899998874 3468999999999999999999999988654 443332 222 111 11 23555666332
Q ss_pred ecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCC-CCCCccccChHHHHHHHcCCeeEEEEeee
Q 023786 203 SRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLH-PTPLQLEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~-~s~~~~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
++. +.....+.+ ++|+.+.+..+.... ....+.+|+...+ ...|.++..++.+.
T Consensus 150 ----~~r--------~~~~~~~~P-~~f~~~~~~~~~~~~~~~~~~~td~~~~~--~~~~~~v~~v~~~~ 204 (218)
T cd02516 150 ----LDR--------EKLWAAQTP-QAFRLDLLLKAHRQASEEGEEFTDDASLV--EAAGGKVALVEGSE 204 (218)
T ss_pred ----CCh--------HHhhhhcCC-CcccHHHHHHHHHHHHhcCCCcCcHHHHH--HHcCCCeEEEecCc
Confidence 111 122344445 888888887765321 1133444544444 35666777776544
No 51
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.78 E-value=1.6e-17 Score=155.95 Aligned_cols=205 Identities=17% Similarity=0.175 Sum_probs=134.6
Q ss_pred ceEEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cC------
Q 023786 49 RVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG------ 110 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g------ 110 (277)
++.|||||||.||||. ||+|+|++|+ |||+|+++++.++ ++++|+|++++ +.+.+++.. ++
T Consensus 3 ~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (380)
T PRK05293 3 EMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANS-GIDTVGVLTQYQPLELNNHIGIGSPWDLDRING 81 (380)
T ss_pred cEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhC-CCCEEEEEecCCHHHHHHHHhCCCcccccCCCC
Confidence 4679999999999995 7999999999 8999999999987 79999999984 566666632 22
Q ss_pred -CeEE--ecCCcC---CCcH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCC
Q 023786 111 -ADVI--MTSESC---RNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 182 (277)
Q Consensus 111 -~~vi--~~~~~~---~~g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~ 182 (277)
+.+. +..+.. +.|+ .++..|++.+.. +.|.+++++||. +. ..++.++++.+.+. ++.+++.+....
T Consensus 82 ~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~-l~-~~d~~~ll~~h~~~-~~~~tl~~~~~~--- 155 (380)
T PRK05293 82 GVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDH-IY-KMDYDKMLDYHKEK-EADVTIAVIEVP--- 155 (380)
T ss_pred CEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCE-EE-cCCHHHHHHHHHhc-CCCEEEEEEEcc---
Confidence 2222 222211 2455 467888887742 136799999998 43 55788999887653 333443333221
Q ss_pred CCCCCceEEE-ECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc-CCCC--CCCcc--ccChHHHH
Q 023786 183 AFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP-GLHP--TPLQL--EEDLEQLK 256 (277)
Q Consensus 183 ~~d~~~~~v~-~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~-~~~~--s~~~~--~d~l~~l~ 256 (277)
..++..++++ .+.+|++..|.+++.. ..+.+.++|+|+|++++|..+. .... ...++ .|.++ .
T Consensus 156 ~~~~~~yG~v~~d~~g~V~~~~eKp~~---------~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~--~ 224 (380)
T PRK05293 156 WEEASRFGIMNTDENMRIVEFEEKPKN---------PKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIP--L 224 (380)
T ss_pred hhhccccCEEEECCCCcEEEEEeCCCC---------CCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHH--H
Confidence 1345555544 5677889888876521 1246889999999999886542 1111 11111 12222 2
Q ss_pred HHHcCCeeEEEEeee
Q 023786 257 VLENGYKMKVQQTYF 271 (277)
Q Consensus 257 ~le~g~~v~~~~~~~ 271 (277)
+++.|.++.++..+.
T Consensus 225 l~~~~~~v~~~~~~g 239 (380)
T PRK05293 225 YLEEGEKLYAYPFKG 239 (380)
T ss_pred HhhcCCeEEEEEeCC
Confidence 456778888887654
No 52
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.78 E-value=3.2e-18 Score=144.24 Aligned_cols=107 Identities=25% Similarity=0.391 Sum_probs=90.5
Q ss_pred EEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHH
Q 023786 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNE 129 (277)
Q Consensus 51 ~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~ 129 (277)
.+||||||+|+||+ +|++++++|+|||+|+++++.+. +++|+|+++++... ...+++.++..+....|...++..
T Consensus 2 ~~iILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~~--~~~iivv~~~~~~~--~~~~~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 2 TGVILAGGKSRRMGGDKALLELGGKPLLEHVLERLKPL--VDEVVISANRDQER--YALLGVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred cEEEECCCccccCCCCceeeEECCEEHHHHHHHHHHhh--cCEEEEECCCChHH--HhhcCCcEeeCCCCCCCCHHHHHH
Confidence 58999999999997 89999999999999999999875 78999999865432 334577777654444566788999
Q ss_pred HHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 130 ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 130 al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
|++.++ .+.+++++||+||++++.++.+++.+
T Consensus 78 ~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 78 ALRAAP--ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred HHHhcC--CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 998873 68999999999999999999999887
No 53
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.78 E-value=4.8e-18 Score=146.29 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCceEEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHH
Q 023786 47 RSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTE 125 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~ 125 (277)
.|++.+||||||+|+||+ +|++++++|+|||+|+++++.. .+++|+|++++.+........++.++..+....|+..
T Consensus 5 ~~~~~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~l~~--~~~~ivvv~~~~~~~~~~~~~~~~~i~~~~~~~G~~~ 82 (200)
T PRK02726 5 KNNLVALILAGGKSSRMGQDKALLPWQGVPLLQRVARIAAA--CADEVYIITPWPERYQSLLPPGCHWLREPPPSQGPLV 82 (200)
T ss_pred CCCceEEEEcCCCcccCCCCceeeEECCEeHHHHHHHHHHh--hCCEEEEECCCHHHHHhhccCCCeEecCCCCCCChHH
Confidence 467889999999999997 7999999999999999999975 3789999998544332222235666665545557778
Q ss_pred HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
++..|++.++ .+++++++||+||+++++++.+++.+..
T Consensus 83 si~~~l~~~~--~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 83 AFAQGLPQIK--TEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred HHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 8999999884 4889999999999999999999998754
No 54
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=99.78 E-value=9.3e-18 Score=147.88 Aligned_cols=200 Identities=23% Similarity=0.284 Sum_probs=133.9
Q ss_pred EEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCe-EEEecC--chHHHHHHHH---cCCeEEecC
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDH-LVVATD--DEKIAECCQQ---FGADVIMTS 117 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~-IvVvt~--~~~i~~~~~~---~g~~vi~~~ 117 (277)
.|||||||.||||. ||+|+++.|+ |||+|+++.+.+. ++++ |+|+++ .+.+.+++.. +++++.+..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~-g~~~ii~V~~~~~~~~i~~~~~~~~~~~~~i~~i~ 79 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANA-GIKEIIVVVNGYKEEQIEEHLGSGYKFGVKIEYIV 79 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHT-TCSEEEEEEETTTHHHHHHHHTTSGGGTEEEEEEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhccc-CCceEEEEEeecccccccccccccccccccceeee
Confidence 48999999999995 7999999999 9999999999987 7999 455553 3567677653 343443322
Q ss_pred CcCCCcHH-HHHHHHHHcccC--CCEEEEEcCCcccCCHHHHHHHHHHHHcC-CCcEEEEEeeecCCCCCCCCCceEE-E
Q 023786 118 ESCRNGTE-RCNEALQKLEKK--YDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDAFDPNRVKC-V 192 (277)
Q Consensus 118 ~~~~~g~~-~i~~al~~~~~~--~d~vlv~~gD~P~i~~~~i~~li~~~~~~-~~~~v~~~~~~~~~~~~~d~~~~~v-~ 192 (277)
+....|++ ++..+...+..+ .+.+++++||..+ +. ++..+++.+.+. .++.+++...+. .++..+++ .
T Consensus 80 ~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~g~v~ 152 (248)
T PF00483_consen 80 QPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIF-DD-DLQDMLEFHRESNADGTVTLLVVPV-----EDPSRYGVVE 152 (248)
T ss_dssp ESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEE-ST-THHHHHHHHHHHSSCESEEEEEEES-----SGGGGSEEEE
T ss_pred cccccchhHHHHHHHHHhhhccccceEEEEeccccc-cc-hhhhHHHhhhccccccccccccccc-----cccccceeee
Confidence 33344664 577888777532 2459999999944 44 899999988753 233344433332 34555544 4
Q ss_pred ECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc----CCCCCCCccccChHHHHHHHcCCeeEEEE
Q 023786 193 VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP----GLHPTPLQLEEDLEQLKVLENGYKMKVQQ 268 (277)
Q Consensus 193 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~----~~~~s~~~~~d~l~~l~~le~g~~v~~~~ 268 (277)
.+++|++..|.+||.... .+.+.++|+|+|++++|..+. +......+..|.+. .++++|..+..+.
T Consensus 153 ~d~~~~V~~~~EKP~~~~--------~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~--~~~~~~~~~~~~~ 222 (248)
T PF00483_consen 153 VDEDGRVIRIVEKPDNPN--------ASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIP--KLLEQGKKVYAFI 222 (248)
T ss_dssp EETTSEEEEEEESCSSHS--------HSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHH--HHHHTTCEEEEEE
T ss_pred eccceeEEEEeccCcccc--------cceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHH--HHHHcCCceEEEE
Confidence 677799999988763211 156999999999999998773 22222333333333 3567877765554
No 55
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=99.77 E-value=3.7e-17 Score=145.72 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=128.3
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc-----CCeEEe---
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF-----GADVIM--- 115 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~-----g~~vi~--- 115 (277)
|||||||.||||. ||+|+|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.+. +.++..
T Consensus 2 avilaaG~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR02623 2 AVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHH-GINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMADN 80 (254)
T ss_pred EEEEcCccccccCccccCCCcceeEECCEEHHHHHHHHHHHC-CCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEeccc
Confidence 8999999999994 79999999999999999999987 79999999973 5566665432 233321
Q ss_pred ----------------cCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeec
Q 023786 116 ----------------TSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL 178 (277)
Q Consensus 116 ----------------~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~ 178 (277)
..+..+.|+. ++.++.+.+. .+.|++++||. + ...++.++++.+.+. ++.+++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~--~e~flv~~gD~-i-~~~dl~~~~~~h~~~-~~d~tl~~~-- 153 (254)
T TIGR02623 81 TMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD--DEAFCFTYGDG-V-ADIDIKALIAFHRKH-GKKATVTAV-- 153 (254)
T ss_pred ccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC--CCeEEEEeCCe-E-ecCCHHHHHHHHHHc-CCCEEEEEe--
Confidence 1122335553 5778888774 46789999998 3 356899999887653 344443322
Q ss_pred CCCCCCCCCceEEEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHH
Q 023786 179 KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVL 258 (277)
Q Consensus 179 ~~~~~~d~~~~~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~l 258 (277)
.++..++++...++++..|.+++.+ .+.+.++|+|+|++++|+.+.... ..+. .|.+.. ++
T Consensus 154 -----~~~~~yG~v~~d~~~V~~~~Ekp~~----------~~~~i~~Giyi~~~~il~~l~~~~-~~~~-~d~i~~--l~ 214 (254)
T TIGR02623 154 -----QPPGRFGALDLEGEQVTSFQEKPLG----------DGGWINGGFFVLNPSVLDLIDGDA-TVWE-QEPLET--LA 214 (254)
T ss_pred -----cCCCcccEEEECCCeEEEEEeCCCC----------CCCeEEEEEEEEcHHHHhhccccC-chhh-hhHHHH--HH
Confidence 2344455543234688888876521 135799999999999997664322 2221 233332 34
Q ss_pred HcCCeeEEEEeee
Q 023786 259 ENGYKMKVQQTYF 271 (277)
Q Consensus 259 e~g~~v~~~~~~~ 271 (277)
+.+ ++.++..++
T Consensus 215 ~~~-~v~~~~~~g 226 (254)
T TIGR02623 215 QRG-ELSAYEHSG 226 (254)
T ss_pred hCC-CEEEEeCCC
Confidence 555 577777554
No 56
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.77 E-value=3.9e-18 Score=144.22 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=90.2
Q ss_pred EEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchH---HHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 52 GIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK---IAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 52 aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~---i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
+||||||+|+||+ +|++++++|+|||+|+++++.+. .+++|+|+++++. +..++..+++.++..+....|...++
T Consensus 2 ~iIla~G~s~R~g~~K~ll~~~g~pll~~~i~~l~~~-~~~~iivv~~~~~~~~~~~~~~~~~v~~v~~~~~~~g~~~si 80 (188)
T TIGR03310 2 AIILAAGLSSRMGQNKLLLPYKGKTILEHVVDNALRL-FFDEVILVLGHEADELVALLANHSNITLVHNPQYAEGQSSSI 80 (188)
T ss_pred eEEECCCCcccCCCCceecccCCeeHHHHHHHHHHHc-CCCcEEEEeCCcHHHHHHHhccCCCeEEEECcChhcCHHHHH
Confidence 7999999999995 89999999999999999999887 5899999987644 33333345777766554444556678
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
..|++ +..+.|.+++++||+||++++.++++++.+...
T Consensus 81 ~~~l~-~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 81 KLGLE-LPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred HHHhc-CCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 88887 222468899999999999999999999887654
No 57
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.77 E-value=4.1e-17 Score=141.40 Aligned_cols=194 Identities=18% Similarity=0.230 Sum_probs=126.8
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cCCeEEecCCcC
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FGADVIMTSESC 120 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g~~vi~~~~~~ 120 (277)
|||||||.|+||. ||+|++++|+|||+|+++.+.+. ++++|+|++++ +.+.+++.+ ++.++.+..+..
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~-~~~~iivv~~~~~~~i~~~~~~~~~~~~~i~~~~~~~ 79 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQ-GFRNFYISVNYLAEMIEDYFGDGSKFGVNISYVREDK 79 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCcchHHHHHHHHHHC-CCcEEEEECccCHHHHHHHHCCccccCccEEEEECCC
Confidence 6899999999994 69999999999999999999987 69999999984 445555532 345554433333
Q ss_pred CCcHH-HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceE
Q 023786 121 RNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA 199 (277)
Q Consensus 121 ~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~ 199 (277)
+.|+. ++..+.+.. .+.+++++||. + ...+++.+++.++++ ++.+++.+.+.. +...+.++...+|++
T Consensus 80 ~~g~~~~l~~~~~~~---~~~~lv~~~D~-i-~~~~~~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~g~~~~d~~~v 148 (220)
T cd06426 80 PLGTAGALSLLPEKP---TDPFLVMNGDI-L-TNLNYEHLLDFHKEN-NADATVCVREYE-----VQVPYGVVETEGGRI 148 (220)
T ss_pred CCcchHHHHHHHhhC---CCCEEEEcCCE-e-eccCHHHHHHHHHhc-CCCEEEEEEEcC-----CCCcceEEEECCCEE
Confidence 34443 343333322 46799999996 4 456889999888654 333444443321 122334443334888
Q ss_pred EeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHHHHcCCeeEEEEeeeE
Q 023786 200 IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVQQTYFT 272 (277)
Q Consensus 200 ~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~le~g~~v~~~~~~~~ 272 (277)
..|.+++. .+.+.++|+|+|++++++.+... .+++..|.+. .+++.|.++.+++.+..
T Consensus 149 ~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~i~~~--~~~~l~~~~~--~~i~~~~~i~~~~~~~~ 206 (220)
T cd06426 149 TSIEEKPT-----------HSFLVNAGIYVLEPEVLDLIPKN--EFFDMPDLIE--KLIKEGKKVGVFPIHEY 206 (220)
T ss_pred EEEEECCC-----------CCCeEEEEEEEEcHHHHhhcCCC--CCcCHHHHHH--HHHHCCCcEEEEEeCCe
Confidence 88876531 13578899999999999876421 1222223222 35677777888877644
No 58
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.77 E-value=1e-17 Score=157.06 Aligned_cols=148 Identities=24% Similarity=0.331 Sum_probs=106.3
Q ss_pred CCceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHc--CCe-EEecCCcC
Q 023786 47 RSRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF--GAD-VIMTSESC 120 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~--g~~-vi~~~~~~ 120 (277)
||++.+||||||.|+||+ +|++++++|+|||+|+++++.+.+.+++|+|+++++... ..+.. +.. +.... .-
T Consensus 3 mm~v~aIILAAG~GsRmg~~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~-~~~~~~~~~~~v~~v~-gG 80 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFSAEVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIA-YMKKALPEIKFVTLVT-GG 80 (378)
T ss_pred CCcceEEEECCCCCccCCCCCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHH-HHHHhcccCCeEEEeC-CC
Confidence 678899999999999995 799999999999999999999886689999999864432 22211 111 11111 11
Q ss_pred CCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEE-EEeeec-C-CCCCCCCCceEEEECCCc
Q 023786 121 RNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS-TAVTSL-K-PEDAFDPNRVKCVVDNHG 197 (277)
Q Consensus 121 ~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~-~~~~~~-~-~~~~~d~~~~~v~~~~~g 197 (277)
.+..+++++|++.++ .|++++++||+||++++.++++++.+.+. ++++. +++.+. . ...+.|++.++.++++|+
T Consensus 81 ~~r~~SV~~gL~~l~--~d~VLVhdadrPfv~~e~I~~li~~~~~~-~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~ 157 (378)
T PRK09382 81 ATRQESVRNALEALD--SEYVLIHDAARPFVPKELIDRLIEALDKA-DCVLPALPVADTLKRANETVDREGLKLIQTPQL 157 (378)
T ss_pred chHHHHHHHHHHhcC--CCeEEEeeccccCCCHHHHHHHHHHhhcC-CeEEEEEEeccCcEEeeeEcCcccEEEEECCCC
Confidence 112356899999884 48999999999999999999999987654 44333 333221 1 123567777777888887
Q ss_pred eE
Q 023786 198 YA 199 (277)
Q Consensus 198 ~~ 199 (277)
+.
T Consensus 158 f~ 159 (378)
T PRK09382 158 SR 159 (378)
T ss_pred CC
Confidence 65
No 59
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.76 E-value=8.6e-18 Score=143.07 Aligned_cols=115 Identities=16% Similarity=0.209 Sum_probs=90.4
Q ss_pred EEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchH--HHHHH----HHcCCeEEecCCcCCCc
Q 023786 51 VGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEK--IAECC----QQFGADVIMTSESCRNG 123 (277)
Q Consensus 51 ~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~--i~~~~----~~~g~~vi~~~~~~~~g 123 (277)
.+||||||+|+||+ +|++++++|+|||+|+++.+.+. .+++|+|+++.+. +.... ...++.++..++..+|.
T Consensus 2 ~~vILAgG~s~Rmg~~K~ll~~~g~~ll~~~i~~~~~~-~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 80 (190)
T TIGR03202 2 VAIYLAAGQSRRMGENKLALPLGETTLGSASLKTALSS-RLSKVIVVIGEKYAHLSWLDPYLLADERIMLVCCRDACEGQ 80 (190)
T ss_pred eEEEEcCCccccCCCCceeceeCCccHHHHHHHHHHhC-CCCcEEEEeCCccchhhhhhHhhhcCCCeEEEECCChhhhH
Confidence 58999999999997 89999999999999999988776 6899999987432 11111 12355666655555555
Q ss_pred HHHHHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 124 TERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 124 ~~~i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
.+++..|++.+. .+.|++++++||+||++++.++.+++.+.+.
T Consensus 81 ~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 81 AHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 678999998763 2468999999999999999999999987653
No 60
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.76 E-value=1.9e-17 Score=141.34 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=91.2
Q ss_pred CCceEEEEecCCCCcccc--ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCc-CCCc
Q 023786 47 RSRVVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSES-CRNG 123 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~--~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~-~~~g 123 (277)
||++.+||||||.|+||+ +|++++++|+|||+|+++.+. +.+++|+|+++.+. .. ....++.++..... ..|.
T Consensus 1 ~~~~~~vILA~G~s~Rm~~~~K~ll~~~g~~ll~~~i~~l~--~~~~~i~vv~~~~~-~~-~~~~~~~~v~~~~~~~~g~ 76 (193)
T PRK00317 1 MPPITGVILAGGRSRRMGGVDKGLQELNGKPLIQHVIERLA--PQVDEIVINANRNL-AR-YAAFGLPVIPDSLADFPGP 76 (193)
T ss_pred CCCceEEEEcCCCcccCCCCCCceeEECCEEHHHHHHHHHh--hhCCEEEEECCCCh-HH-HHhcCCcEEeCCCCCCCCC
Confidence 578899999999999994 799999999999999999998 36899999987532 22 33456666554322 2455
Q ss_pred HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 124 TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 124 ~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
..++..|++.. +.+++++++||+||+++++++.+++.+.+.
T Consensus 77 ~~~i~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 117 (193)
T PRK00317 77 LAGILAGLKQA--RTEWVLVVPCDTPFIPPDLVARLAQAAGKD 117 (193)
T ss_pred HHHHHHHHHhc--CCCeEEEEcCCcCCCCHHHHHHHHHhhhcC
Confidence 67888898865 468999999999999999999999987543
No 61
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.76 E-value=9.6e-17 Score=152.30 Aligned_cols=182 Identities=16% Similarity=0.114 Sum_probs=123.1
Q ss_pred CCceEEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-cC-----C
Q 023786 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG-----A 111 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~g-----~ 111 (277)
|.++.|||||||.||||. ||+|+|++|+ |||+|+++++.++ ++++|+|++++ +.+.+++.. ++ .
T Consensus 3 ~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~ 81 (407)
T PRK00844 3 MPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNS-GYLRIYVLTQYKSHSLDRHISQTWRLSGLLG 81 (407)
T ss_pred CCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHC-CCCEEEEEeccCHHHHHHHHHhCcCccccCC
Confidence 445789999999999996 7999999998 9999999999997 79999999973 667776642 21 1
Q ss_pred eEEe-cCC------cCCCcH-HHHHHHHHHcccC-CCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCC
Q 023786 112 DVIM-TSE------SCRNGT-ERCNEALQKLEKK-YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPED 182 (277)
Q Consensus 112 ~vi~-~~~------~~~~g~-~~i~~al~~~~~~-~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~ 182 (277)
.++. .++ ..+.|+ +++..+++.+..+ .+.++++.||. + ...++.++++.+.++ ++.+++......
T Consensus 82 ~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~-v-~~~dl~~l~~~h~~~-~~~~ti~~~~~~--- 155 (407)
T PRK00844 82 NYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADH-V-YRMDPRQMVDFHIES-GAGVTVAAIRVP--- 155 (407)
T ss_pred CeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCE-E-EcCCHHHHHHHHHhc-CCcEEEEEEecc---
Confidence 1221 111 113455 4577888877432 36799999998 3 356889999888654 333443333221
Q ss_pred CCCCCceEEE-ECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhh
Q 023786 183 AFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 237 (277)
Q Consensus 183 ~~d~~~~~v~-~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 237 (277)
..++..++++ .+++|++..|.+++.+... ......+.+.++|+|+|++++|..
T Consensus 156 ~~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~--~~~~~~~~~~~~Giyi~~~~~l~~ 209 (407)
T PRK00844 156 REEASAFGVIEVDPDGRIRGFLEKPADPPG--LPDDPDEALASMGNYVFTTDALVD 209 (407)
T ss_pred hHHcccCCEEEECCCCCEEEEEECCCCccc--ccCCCCCcEEEeEEEEEeHHHHHH
Confidence 1244455544 5778999888877532110 011122468999999999999744
No 62
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.75 E-value=6.4e-17 Score=154.52 Aligned_cols=216 Identities=20% Similarity=0.210 Sum_probs=138.5
Q ss_pred CCceEEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-c-------
Q 023786 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F------- 109 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~------- 109 (277)
|.++.|||||||.||||. ||+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.. +
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~-Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~~ 79 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINS-GINKIYVLTQFNSASLNRHISQTYNFDGFSG 79 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHC-CCCEEEEEecCCHHHHHHHHhcCcCccccCC
Confidence 346789999999999994 7999999999 9999999999987 79999999984 567777642 1
Q ss_pred C-CeEEecCCc-----CCCcH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCC
Q 023786 110 G-ADVIMTSES-----CRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (277)
Q Consensus 110 g-~~vi~~~~~-----~~~g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~ 181 (277)
+ +.+....+. ...|+ ++++.+++.+.. ..+.+++++||. ++ ..+++++++.+.+. ++.+++.+.+..
T Consensus 80 g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~-l~-~~dl~~ll~~h~~~-~a~~tl~~~~~~-- 154 (429)
T PRK02862 80 GFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQ-LY-RMDYRLFVQHHRET-GADITLAVLPVD-- 154 (429)
T ss_pred CEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-eCCHHHHHHHHHHc-CCCEEEEEEecC--
Confidence 1 112211111 11455 457788877742 246799999999 54 46889999888654 444554444332
Q ss_pred CCCCCCceEEE-ECCCceEEeeecCCcCCCC------------CCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCcc
Q 023786 182 DAFDPNRVKCV-VDNHGYAIYFSRGLIPYNK------------SGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQL 248 (277)
Q Consensus 182 ~~~d~~~~~v~-~~~~g~~~~f~~~~~~~~~------------~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~ 248 (277)
..++..++++ .+++|++..|.+++.+... .....+....+.++|+|+|++++|..+...... ..+
T Consensus 155 -~~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~-~~~ 232 (429)
T PRK02862 155 -EKDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPE-YTD 232 (429)
T ss_pred -hhhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCC-hhh
Confidence 1345555554 5678899999887632110 000011124688999999999999655321111 111
Q ss_pred ccChHHHHHHHcCCeeEEEEeee
Q 023786 249 EEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 249 ~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
.. .+.+..+..+.++.++..++
T Consensus 233 ~~-~dil~~l~~~~~v~~~~~~g 254 (429)
T PRK02862 233 FG-KEIIPEAIRDYKVQSYLFDG 254 (429)
T ss_pred hH-HHHHHHHhccCcEEEEEeCC
Confidence 10 12334445667788777644
No 63
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.75 E-value=6.2e-17 Score=155.04 Aligned_cols=169 Identities=19% Similarity=0.214 Sum_probs=118.3
Q ss_pred EEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCc-H
Q 023786 51 VGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNG-T 124 (277)
Q Consensus 51 ~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g-~ 124 (277)
.|||||||.|+||+ ||+|++++|+|||+|+++.+.+. +++|+|+++. +.+.+++.. ++.++..+ ...| .
T Consensus 2 ~avIlA~G~gtRl~~~~pK~l~~v~gkpli~~~l~~l~~~--~~~i~vv~~~~~~~i~~~~~~-~~~~~~~~--~~~g~~ 76 (448)
T PRK14357 2 RALVLAAGKGTRMKSKIPKVLHKISGKPMINWVIDTAKKV--AQKVGVVLGHEAELVKKLLPE-WVKIFLQE--EQLGTA 76 (448)
T ss_pred eEEEECCCCCccCCCCCCceeeEECCeeHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHhccc-ccEEEecC--CCCChH
Confidence 49999999999996 79999999999999999999875 4889888874 344444332 45554432 2334 4
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeec
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSR 204 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~ 204 (277)
.++++++++++ +.|.+++++||+||++..+++++++.+++. ++.+++...+. .+|..+.++...+|++ .+.+
T Consensus 77 ~ai~~a~~~l~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~-~~d~ti~~~~~-----~~~~~~g~v~~d~g~v-~~~e 148 (448)
T PRK14357 77 HAVMCARDFIE-PGDDLLILYGDVPLISENTLKRLIEEHNRK-GADVTILVADL-----EDPTGYGRIIRDGGKY-RIVE 148 (448)
T ss_pred HHHHHHHHhcC-cCCeEEEEeCCcccCCHHHHHHHHHHHHhc-CCeEEEEEEEc-----CCCCCcEEEEEcCCeE-EEEE
Confidence 56888888874 257899999999999999999999988653 44455544443 3555555544346766 4444
Q ss_pred CCcCCCCCCCCCCCCCceEEEEEEeecHHHHhh
Q 023786 205 GLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 237 (277)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 237 (277)
++. .+. ........++|+|+|++++|..
T Consensus 149 ~~~-~~~----~~~~~~~~~~GiYv~~~~~l~~ 176 (448)
T PRK14357 149 DKD-APE----EEKKIKEINTGIYVFSGDFLLE 176 (448)
T ss_pred CCC-CCh----HHhcCcEEEeEEEEEEHHHHHH
Confidence 331 110 0112358899999999998644
No 64
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.75 E-value=2e-17 Score=140.00 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=89.2
Q ss_pred eEEEEecCCCCcccc--ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecC-CcCCCcHHH
Q 023786 50 VVGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTS-ESCRNGTER 126 (277)
Q Consensus 50 i~aIIlAaG~ssRl~--~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~-~~~~~g~~~ 126 (277)
+.+||||||+||||+ +|++++++|+|||+|+++.+.. .+++|+|+++.+.........++.++... ....|..++
T Consensus 1 ~~~iILAgG~s~Rmg~~~K~l~~i~g~pll~~~l~~l~~--~~~~ivv~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~s 78 (186)
T TIGR02665 1 ISGVILAGGRARRMGGRDKGLVELGGKPLIEHVLARLRP--QVSDLAISANRNPERYAQAGFGLPVVPDALADFPGPLAG 78 (186)
T ss_pred CeEEEEcCCccccCCCCCCceeEECCEEHHHHHHHHHHh--hCCEEEEEcCCCHHHHhhccCCCcEEecCCCCCCCCHHH
Confidence 358999999999996 8999999999999999999975 58999999975543222223456665543 223455678
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+..|++.+ +.+++++++||+||++++.++.+++.+..
T Consensus 79 i~~al~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 79 ILAGLRWA--GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred HHHHHHhc--CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 99999887 46889999999999999999999998764
No 65
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.74 E-value=5e-17 Score=141.35 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=113.9
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHc---C-----CeEE
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF---G-----ADVI 114 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~---g-----~~vi 114 (277)
.|||||||.|+||. ||+|+|++|+|||+|+++.+.++ ++++|+|+++ .+.+.+++... + ..+.
T Consensus 2 ~aiIla~G~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~-Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~~~~~~i~ 80 (217)
T cd04197 2 QAVVLADSFNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALN-GVEEVFVFCCSHSDQIKEYIEKSKWSKPKSSLMIVI 80 (217)
T ss_pred eEEEEcCCCcccccccccCCCceeeEECCEehHHHHHHHHHHC-CCCeEEEEeCCCHHHHHHHHhhccccccccCcceEE
Confidence 59999999999995 79999999999999999999997 7999999997 46777777542 1 2232
Q ss_pred ecCCcCCCcHH-HHHH--HHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC----CCcEEEEEeeecCCCC---CC
Q 023786 115 MTSESCRNGTE-RCNE--ALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA----PDAVFSTAVTSLKPED---AF 184 (277)
Q Consensus 115 ~~~~~~~~g~~-~i~~--al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~----~~~~v~~~~~~~~~~~---~~ 184 (277)
+..+....+++ .+.. +...+ .+.|+++.||.. ...++.++++.|++. .++.+++...+....+ ..
T Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~---~~~flv~~gD~i--~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~ 155 (217)
T cd04197 81 IIMSEDCRSLGDALRDLDAKGLI---RGDFILVSGDVV--SNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRT 155 (217)
T ss_pred EEeCCCcCccchHHHHHhhcccc---CCCEEEEeCCee--eccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccC
Confidence 22222223332 2221 11112 245899999983 356799999988752 3566666555543211 11
Q ss_pred CCCceEEEECCC-ceEEeeecCCcCCCCCCC-CC-------CC---CCceEEEEEEeecHHHH
Q 023786 185 DPNRVKCVVDNH-GYAIYFSRGLIPYNKSGK-VN-------PQ---FPYLLHLGIQSYDSNFL 235 (277)
Q Consensus 185 d~~~~~v~~~~~-g~~~~f~~~~~~~~~~~~-~~-------~~---~~~~~~~Giy~~~~~~l 235 (277)
++..+ +..+++ |+++.|.+++........ .. +. .+.+.++|+|+|++++|
T Consensus 156 ~~~~v-v~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 156 GEEFV-IAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred CCceE-EEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 11122 344544 899999988744321110 00 00 24678899999998764
No 66
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.73 E-value=4.6e-16 Score=148.47 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=123.5
Q ss_pred CceEEEEecCCCCcccc------ccccccccccc-hHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-cC------C
Q 023786 48 SRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG------A 111 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~------~K~l~~i~Gkp-Li~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~g------~ 111 (277)
+++.|||||||.||||. ||+|+|++|+| ||+|+++.+.++ ++++|+|++++ +.+.+++.+ ++ .
T Consensus 14 ~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~-Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~~~~ 92 (425)
T PRK00725 14 RDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINS-GIRRIGVLTQYKAHSLIRHIQRGWSFFREELG 92 (425)
T ss_pred cceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHC-CCCeEEEEecCCHHHHHHHHHhhhcccccCCC
Confidence 45779999999999995 79999999997 999999999987 79999999974 666666643 21 1
Q ss_pred -eEE-ec------CCcCCCcH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCC
Q 023786 112 -DVI-MT------SESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (277)
Q Consensus 112 -~vi-~~------~~~~~~g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~ 181 (277)
.+. .. .+..+.|+ .++.+++..+.. ..|.+++++||. +. ..++.++++.+.++ ++.+++...+..
T Consensus 93 ~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~-l~-~~dl~~ll~~h~~~-~~~~tl~~~~~~-- 167 (425)
T PRK00725 93 EFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDH-IY-KMDYSRMLADHVES-GADCTVACLEVP-- 167 (425)
T ss_pred CeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCe-Ee-ccCHHHHHHHHHHc-CCCEEEEEEecc--
Confidence 111 11 11223455 457888887752 247899999999 43 56899999988654 343444333321
Q ss_pred CCCCCCceEEE-ECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhh
Q 023786 182 DAFDPNRVKCV-VDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKI 237 (277)
Q Consensus 182 ~~~d~~~~~v~-~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~ 237 (277)
..++..++++ .+++|++..|.+++..... ...+..+.+.++|+|+|++++|..
T Consensus 168 -~~~~~~yG~v~~d~~~~V~~~~EKp~~~~~--~~~~~~~~l~n~GIYi~~~~~L~~ 221 (425)
T PRK00725 168 -REEASAFGVMAVDENDRITAFVEKPANPPA--MPGDPDKSLASMGIYVFNADYLYE 221 (425)
T ss_pred -hhhcccceEEEECCCCCEEEEEECCCCccc--cccCccceEEEeeEEEEeHHHHHH
Confidence 1345555554 5677899888887532110 001113578999999999998754
No 67
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.73 E-value=8.2e-17 Score=141.31 Aligned_cols=112 Identities=36% Similarity=0.588 Sum_probs=88.8
Q ss_pred EEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCc----hHHHHHHHHcCCeEEecCCcCCCcHHH
Q 023786 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRNGTER 126 (277)
Q Consensus 51 ~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~----~~i~~~~~~~g~~vi~~~~~~~~g~~~ 126 (277)
.|||||||+|+||++|++++++|+||++|+++++.+++.+++|+|+++. +.+.+++...++.++..+.. ++..+
T Consensus 1 ~aiIlA~G~S~R~~~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~~~v~~v~~~~~--~~l~~ 78 (233)
T cd02518 1 VAIIQARMGSTRLPGKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKKLGVKVFRGSEE--DVLGR 78 (233)
T ss_pred CEEEeeCCCCCCCCCCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHHcCCeEEECCch--hHHHH
Confidence 3799999999999999999999999999999999987558999999974 35666666677877765432 33333
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
...+++.. +.|++++++||+||+++++++++++.+..+
T Consensus 79 ~~~~~~~~--~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 79 YYQAAEEY--NADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred HHHHHHHc--CCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 33344333 468999999999999999999999988653
No 68
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.72 E-value=5e-16 Score=148.66 Aligned_cols=216 Identities=19% Similarity=0.223 Sum_probs=137.5
Q ss_pred CCceEEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-c--C----
Q 023786 47 RSRVVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--G---- 110 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~--g---- 110 (277)
|.++.|||||+|.|+||. ||+|+|++|+ |||+|+++.+.++ ++++|+|++++ +.+.+++.. + +
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~-Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~ 79 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINS-GINKIYVLTQFNSASLNRHLSRAYNFGNGGN 79 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhC-CCCEEEEEeccCHHHHHHHHhccCCCCCCcc
Confidence 346789999999999995 7999999997 9999999999987 79999999974 667776643 1 1
Q ss_pred -----CeEEecCCc-----CCCcH-HHHHHHHHHcccC----CCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEe
Q 023786 111 -----ADVIMTSES-----CRNGT-ERCNEALQKLEKK----YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAV 175 (277)
Q Consensus 111 -----~~vi~~~~~-----~~~g~-~~i~~al~~~~~~----~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~ 175 (277)
..+....+. .+.|+ +.++.++..+... .+.|++++||. +. ..++.++++.|++. ++.+++..
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~-v~-~~dl~~ll~~h~~~-~a~~ti~~ 156 (436)
T PLN02241 80 FGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDH-LY-RMDYMDFVQKHRES-GADITIAC 156 (436)
T ss_pred cCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCe-EE-ccCHHHHHHHHHHc-CCCEEEEE
Confidence 122111111 23454 3466665554321 36799999999 44 45799999988764 45455544
Q ss_pred eecCCCCCCCCCceEE-EECCCceEEeeecCCcCCCC------------CCCCCCCCCceEEEEEEeecHHHHhhc-cCC
Q 023786 176 TSLKPEDAFDPNRVKC-VVDNHGYAIYFSRGLIPYNK------------SGKVNPQFPYLLHLGIQSYDSNFLKIY-PGL 241 (277)
Q Consensus 176 ~~~~~~~~~d~~~~~v-~~~~~g~~~~f~~~~~~~~~------------~~~~~~~~~~~~~~Giy~~~~~~l~~~-~~~ 241 (277)
.++.. .++..+.+ ..+.+|++..|.+++..... +....+..+.+.++|+|+|++++|..+ ...
T Consensus 157 ~~v~~---~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~ 233 (436)
T PLN02241 157 LPVDE---SRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWR 233 (436)
T ss_pred Eecch---hhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhh
Confidence 44321 23444444 35778899999887622100 000001124689999999999999654 222
Q ss_pred CCCCCc-cccChHHHHHHHcCCeeEEEEeee
Q 023786 242 HPTPLQ-LEEDLEQLKVLENGYKMKVQQTYF 271 (277)
Q Consensus 242 ~~s~~~-~~d~l~~l~~le~g~~v~~~~~~~ 271 (277)
.+.... ..|.+. .++..|.+++++..++
T Consensus 234 ~~~~~~~~~dil~--~l~~~g~~v~~~~~~g 262 (436)
T PLN02241 234 FPTANDFGSEIIP--GAIKEGYNVQAYLFDG 262 (436)
T ss_pred cccccchhHHHHH--HHhhcCCeEEEEeeCC
Confidence 212110 012222 3456778898887654
No 69
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.71 E-value=9.9e-16 Score=136.20 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=126.4
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHc---C--CeEE----
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQF---G--ADVI---- 114 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~---g--~~vi---- 114 (277)
|||||||.||||. ||+|+|++|+|||+|+++.+.++ ++++|+|++++ +.+.+++.+. + +++.
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHY-GHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCEEHHHHHHHHHHhC-CCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 6899999999994 79999999999999999999988 79999999974 6777776542 2 2221
Q ss_pred ----ecCCc-----------CCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeec
Q 023786 115 ----MTSES-----------CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSL 178 (277)
Q Consensus 115 ----~~~~~-----------~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~ 178 (277)
..+.. ...++ .++..|.+.+.. .+.|++++||.. + ..++..+++.+... ++.+++....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-~~~~lv~~gD~i-~-~~dl~~ll~~h~~~-~~~~tl~~~~- 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-DETFMLTYGDGV-S-DVNINALIEFHRSH-GKLATVTAVH- 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-CCeEEEEcCCEE-E-CCCHHHHHHHHHHc-CCCEEEEEec-
Confidence 11100 11223 357788888742 267999999983 3 34678998877653 3434433221
Q ss_pred CCCCCCCCCceE-EEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHHHH
Q 023786 179 KPEDAFDPNRVK-CVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKV 257 (277)
Q Consensus 179 ~~~~~~d~~~~~-v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l~~ 257 (277)
++..+. +..+++|++..|.+++.+ .+...++|+|+|++++++.+... ...+ ..|.++. +
T Consensus 155 ------~~~~~g~v~~d~~g~V~~~~ekp~~----------~~~~i~~Giyi~~~~l~~~l~~~-~~~~-~~d~l~~--l 214 (253)
T cd02524 155 ------PPGRFGELDLDDDGQVTSFTEKPQG----------DGGWINGGFFVLEPEVFDYIDGD-DTVF-EREPLER--L 214 (253)
T ss_pred ------CCCcccEEEECCCCCEEEEEECCCC----------CCceEEEEEEEECHHHHHhhccc-cchh-hHHHHHH--H
Confidence 223333 345778999888876521 12478899999999998776443 1111 1233332 3
Q ss_pred HHcCCeeEEEEeee
Q 023786 258 LENGYKMKVQQTYF 271 (277)
Q Consensus 258 le~g~~v~~~~~~~ 271 (277)
++.| ++.+++.++
T Consensus 215 i~~~-~v~~~~~~g 227 (253)
T cd02524 215 AKDG-ELMAYKHTG 227 (253)
T ss_pred HhcC-CEEEEecCC
Confidence 4554 666766543
No 70
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.70 E-value=1.2e-15 Score=133.29 Aligned_cols=196 Identities=18% Similarity=0.158 Sum_probs=122.3
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCchHH-----HHHHHH--cCCeEEecCC
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI-----AECCQQ--FGADVIMTSE 118 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i-----~~~~~~--~g~~vi~~~~ 118 (277)
+||||||.||||. ||+|++++|+|||+|+++.+.++ ++++++|+++.+.. .+.... .++.++..++
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~-g~~~ivvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKI-FDSRFIFICRDEHNTKFHLDESLKLLAPNATVVELDG 79 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCEEHHHHHHHhhhcc-CCceEEEEEChHHhhhhhHHHHHHHhCCCCEEEEeCC
Confidence 4899999999994 79999999999999999999988 59999999874322 222221 2456655444
Q ss_pred cCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCce
Q 023786 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (277)
Q Consensus 119 ~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~ 198 (277)
...|...++..|+..+. ..+.+++++||. +++. ++..++..+.+. +...++..... .++....+..+++|+
T Consensus 80 ~~~g~~~~l~~a~~~l~-~~~~~lv~~~D~-i~~~-~~~~~~~~~~~~-~~~~~i~~~~~-----~~~~~~~v~~d~~~~ 150 (231)
T cd04183 80 ETLGAACTVLLAADLID-NDDPLLIFNCDQ-IVES-DLLAFLAAFRER-DLDGGVLTFFS-----SHPRWSYVKLDENGR 150 (231)
T ss_pred CCCcHHHHHHHHHhhcC-CCCCEEEEecce-eecc-CHHHHHHHhhcc-CCceEEEEEeC-----CCCCeEEEEECCCCC
Confidence 43333456888888774 236789999999 5544 566677666442 22222222221 122223345677888
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHH-HH-hhccC---C---CCCCCccccChHHHHHHHcCCeeEEEEee
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSN-FL-KIYPG---L---HPTPLQLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~-~l-~~~~~---~---~~s~~~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
+..|.++.. .+...++|+|+|+++ .+ +.+.. . ...+++..|.++ .+++.|.++..+..+
T Consensus 151 v~~~~ek~~-----------~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~--~~~~~g~~v~~~~~~ 217 (231)
T cd04183 151 VIETAEKEP-----------ISDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYN--ELILDGKKVGIYLID 217 (231)
T ss_pred EEEeEEcCC-----------CCCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHH--HHHHcCCEEEEEEec
Confidence 877654421 135789999999986 33 32221 1 112232223333 346788888888873
No 71
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.70 E-value=2.5e-16 Score=134.72 Aligned_cols=114 Identities=22% Similarity=0.390 Sum_probs=91.2
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
+++.+||||||+|+||.+|.+.+++|+||++|+++++... ++.++|+.+... .. ...+|++++.......|...++
T Consensus 3 ~~~~~vILAGG~srRm~dK~l~~~~g~~lie~v~~~L~~~--~~~vvi~~~~~~-~~-~~~~g~~vv~D~~~~~GPL~Gi 78 (192)
T COG0746 3 TPMTGVILAGGKSRRMRDKALLPLNGRPLIEHVIDRLRPQ--VDVVVISANRNQ-GR-YAEFGLPVVPDELPGFGPLAGI 78 (192)
T ss_pred CCceEEEecCCccccccccccceeCCeEHHHHHHHHhccc--CCEEEEeCCCch-hh-hhccCCceeecCCCCCCCHHHH
Confidence 4577999999999999889999999999999999999875 555555554322 12 3345788776544333778899
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCC
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAP 167 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~ 167 (277)
..|+++.. .++++++.||+||++++.++.+++.+.+..
T Consensus 79 ~~al~~~~--~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 79 LAALRHFG--TEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred HHHHHhCC--CCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 99999884 689999999999999999999999887643
No 72
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.70 E-value=3.8e-16 Score=132.81 Aligned_cols=111 Identities=21% Similarity=0.248 Sum_probs=87.5
Q ss_pred EEEEecCCCCcccc--ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCCCcHHH
Q 023786 51 VGIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCRNGTER 126 (277)
Q Consensus 51 ~aIIlAaG~ssRl~--~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~~g~~~ 126 (277)
.+||||||+||||+ +|++++++|+|||+|+++++.+. .+++|+|++++ +.+..+++..+..+ .. ....|...+
T Consensus 2 ~aIILAgG~gsRmg~~~K~Ll~i~GkplI~~vi~~l~~~-~i~~I~Vv~~~~~~~~~~~l~~~~~~~-~~-~~g~G~~~~ 78 (183)
T TIGR00454 2 DALIMAGGKGTRLGGVEKPLIEVCGRCLIDHVLSPLLKS-KVNNIIIATSPHTPKTEEYINSAYKDY-KN-ASGKGYIED 78 (183)
T ss_pred eEEEECCccCccCCCCCceEeEECCEEHHHHHHHHHHhC-CCCEEEEEeCCCHHHHHHHHhhcCcEE-Ee-cCCCCHHHH
Confidence 48999999999996 69999999999999999999877 48999999873 45666665544333 22 222344567
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+..|++.+. ..++++++.||+||+++++++.+++.+..
T Consensus 79 l~~al~~~~-~~~~~lv~~~D~P~i~~~~i~~li~~~~~ 116 (183)
T TIGR00454 79 LNECIGELY-FSEPFLVVSSDLINLRSKIIDSIVDYYYC 116 (183)
T ss_pred HHHHhhccc-CCCCEEEEeCCcCcCCHHHHHHHHHHHHh
Confidence 888887653 24689999999999999999999998855
No 73
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.69 E-value=4.6e-15 Score=130.80 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=139.9
Q ss_pred eEEEEecCCCCccc-c-----ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHH----------HH-----
Q 023786 50 VVGIIPARFASSRF-E-----GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAE----------CC----- 106 (277)
Q Consensus 50 i~aIIlAaG~ssRl-~-----~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~----------~~----- 106 (277)
..|||||||.|||| | ||-|+|+-+||+|+|+++.+.++ ++++|+++|+. ..|++ .+
T Consensus 5 rKAViPaAGlGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~a-GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K 83 (291)
T COG1210 5 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAA-GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGK 83 (291)
T ss_pred cEEEEEccCcccccccccccCchhhccccCchhHHHHHHHHHHc-CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCH
Confidence 46999999999999 5 79999999999999999999998 79999999962 22221 11
Q ss_pred -------HH--cCCeEEecCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCcccCC-HHHHHHHHHHHHcCCCcEEEEEe
Q 023786 107 -------QQ--FGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDEPLIE-PEIIDGVVKALQAAPDAVFSTAV 175 (277)
Q Consensus 107 -------~~--~g~~vi~~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~P~i~-~~~i~~li~~~~~~~~~~v~~~~ 175 (277)
++ ..+++.+..+..+.|.. .+..|-..+. ++.|.|+.+|.-+.+ ...+.+|++.+.+...+++++-
T Consensus 84 ~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg--~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~- 160 (291)
T COG1210 84 RELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG--DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVE- 160 (291)
T ss_pred HHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC--CCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEE-
Confidence 11 13556555566677764 4667777774 578999999986654 4577889998877556677743
Q ss_pred eecCCCCCCCCCceEEEE----CCCc--eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCC---CC
Q 023786 176 TSLKPEDAFDPNRVKCVV----DNHG--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPT---PL 246 (277)
Q Consensus 176 ~~~~~~~~~d~~~~~v~~----~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s---~~ 246 (277)
++.. .+.+.|+++. ..++ ++..+-+||.+. +..|++...|-|++++++++.+...++. ++
T Consensus 161 -ev~~---e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~-------~APSnlai~GRYil~p~IFd~L~~~~~G~ggEi 229 (291)
T COG1210 161 -EVPP---EDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPE-------EAPSNLAIVGRYVLTPEIFDILEETKPGAGGEI 229 (291)
T ss_pred -ECCH---HHCcccceEecCccccCCeEEEEEEEECCCCC-------CCCcceeeeeeeecCHHHHHHHhhCCCCCCCEe
Confidence 3322 3445566654 2333 566677776332 2357899999999999999988876555 46
Q ss_pred ccccChHHHHHHHcCCeeEEEEee
Q 023786 247 QLEEDLEQLKVLENGYKMKVQQTY 270 (277)
Q Consensus 247 ~~~d~l~~l~~le~g~~v~~~~~~ 270 (277)
+.+|.+..| -....++.+...
T Consensus 230 QLTDai~~L---~~~~~v~a~~~~ 250 (291)
T COG1210 230 QLTDAIKKL---LKKEPVLAYVFE 250 (291)
T ss_pred eHHHHHHHH---HhhCcEEEEEec
Confidence 666655433 233556655543
No 74
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.69 E-value=9.2e-16 Score=138.34 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=116.9
Q ss_pred EEEEecCCCCcccc-------ccccccccc-cchHHHHHHHHhccCCCCeEEEecCch---HHHHHHHH--cCCeEEecC
Q 023786 51 VGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQ--FGADVIMTS 117 (277)
Q Consensus 51 ~aIIlAaG~ssRl~-------~K~l~~i~G-kpLi~~~i~~l~~~~~i~~IvVvt~~~---~i~~~~~~--~g~~vi~~~ 117 (277)
.+||||||.||||. ||+++++.| +|||+|+++++...+++++|+|+|+.+ .+.+.+.. .+.+++..
T Consensus 2 ~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~~~~~~~ii~e- 80 (274)
T cd02509 2 YPVILAGGSGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPEGLPEENIILE- 80 (274)
T ss_pred EEEEEcccccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhhcCCCceEEEC-
Confidence 48999999999992 799999999 999999999999875589999999852 34444543 23455543
Q ss_pred CcCCCcHH-HHHHHHHHccc--CCCEEEEEcCCcccCCHHHHHHHHHHHHc--CCCcEEEEEeeecCCCCCCCCCceEEE
Q 023786 118 ESCRNGTE-RCNEALQKLEK--KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNRVKCV 192 (277)
Q Consensus 118 ~~~~~g~~-~i~~al~~~~~--~~d~vlv~~gD~P~i~~~~i~~li~~~~~--~~~~~v~~~~~~~~~~~~~d~~~~~v~ 192 (277)
+...|+. .+..|+..+.. ..+.++++++|+++.+..++.++++.+.+ ..++++++.+.+. .+...++.+
T Consensus 81 -p~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~-----~~~t~yGyI 154 (274)
T cd02509 81 -PEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT-----RPETGYGYI 154 (274)
T ss_pred -CCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec-----CCCCCeEEE
Confidence 3344554 46666666531 24689999999998877777777754321 1255666655442 122334443
Q ss_pred -ECCC--c---eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHh
Q 023786 193 -VDNH--G---YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 236 (277)
Q Consensus 193 -~~~~--g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 236 (277)
.+++ | ++..|.+||....... .-....++.|+|+|+|+.+.|.
T Consensus 155 ~~~~~~~~~~~~V~~f~EKP~~~~a~~-~~~~g~~~wNsGiyi~~~~~l~ 203 (274)
T cd02509 155 EAGEKLGGGVYRVKRFVEKPDLETAKE-YLESGNYLWNSGIFLFRAKTFL 203 (274)
T ss_pred EeCCcCCCCceEEeEEEECcChHHHHH-HhhcCCeEEECceeeeeHHHHH
Confidence 4444 2 7888888863221100 0001236889999999976654
No 75
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.69 E-value=5.4e-16 Score=145.13 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=114.1
Q ss_pred eEEEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--h-HHHHHHHH---cCCe----
Q 023786 50 VVGIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--E-KIAECCQQ---FGAD---- 112 (277)
Q Consensus 50 i~aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~-~i~~~~~~---~g~~---- 112 (277)
+.|||||+|.|+||. ||+|+|++|+ |||+|+++.+.++ ++++|+|++++ + .+.+++.+ ++.+
T Consensus 3 ~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~-Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 3 MSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNA-GIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred EEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhcc-CCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 569999999999995 7999999999 9999999999998 79999999985 4 78887742 3333
Q ss_pred ---EEecCCcCCC--cH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCC
Q 023786 113 ---VIMTSESCRN--GT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFD 185 (277)
Q Consensus 113 ---vi~~~~~~~~--g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d 185 (277)
+.+..+.... |+ .++..+++.+.. ..+.+++++||. + ...++.++++.|.++ ++.+++...+... .+
T Consensus 82 ~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~-l-~~~dl~~ll~~h~~~-~a~~tl~~~~v~~---~~ 155 (369)
T TIGR02092 82 GLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHM-V-CNIDLKAVLKYHEET-GKDITVVYKKVKP---AD 155 (369)
T ss_pred cEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCE-E-EecCHHHHHHHHHHc-CCCEEEEEEecCH---HH
Confidence 1222222221 33 246667776631 246899999998 4 456899999888654 3445554444310 12
Q ss_pred CCce--EEEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHh
Q 023786 186 PNRV--KCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 236 (277)
Q Consensus 186 ~~~~--~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 236 (277)
+..+ .+..+.+|.+..|.++. + + ......++|+|+|+++.|.
T Consensus 156 ~~~~g~vv~~~~~g~v~~~~~~~-~-~-------~~~~~~~~Giyi~~~~~l~ 199 (369)
T TIGR02092 156 ASEYDTILRFDESGKVKSIGQNL-N-P-------EEEENISLDIYIVSTDLLI 199 (369)
T ss_pred ccccCcEEEEcCCCCEEeccccC-C-C-------CCcceeeeeEEEEEHHHHH
Confidence 3333 23355667776664321 1 0 1234678999999998764
No 76
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.68 E-value=1.9e-15 Score=132.03 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=111.2
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-cCCeEEecCCcCCC
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FGADVIMTSESCRN 122 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~g~~vi~~~~~~~~ 122 (277)
|||||||.|+||+ ||++++++|+|||+|+++.+.++ ++++|+|++++ +.+.+++.. .++.++.+++....
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEA-GIDDIVIVTGYKKEQIEELLKKYPNIKFVYNPDYAET 79 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCEEHHHHHHHHHHHC-CCceEEEEeccCHHHHHHHHhccCCeEEEeCcchhhh
Confidence 6999999999996 69999999999999999999988 79999999984 556666654 46777766543233
Q ss_pred c-HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEe
Q 023786 123 G-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIY 201 (277)
Q Consensus 123 g-~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~ 201 (277)
| ..++..+++.+ .+.+++++||+++ +.+.++.+++ .+.+. ++.+.+... .....+.+..+.++.++.
T Consensus 80 g~~~s~~~~~~~~---~~~~lv~~~D~~~-~~~~~~~~~~---~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~v~~ 147 (229)
T cd02523 80 NNIYSLYLARDFL---DEDFLLLEGDVVF-DPSILERLLS---SPADN--AILVDKKTK---EWEDEYVKDLDDAGVLLG 147 (229)
T ss_pred CcHHHHHHHHHHc---CCCEEEEeCCEec-CHHHHHHHHc---CCCCC--eEEEccCcc---cccccceeeecCccceEe
Confidence 4 46788888877 2569999999965 6655554442 22233 333332111 112223333333356655
Q ss_pred eecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 202 FSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 202 f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
+.+++.+ +......++|+|+|+++.+..+.
T Consensus 148 ~~~k~~~--------~~~~~~~~~Giy~~~~~~~~~l~ 177 (229)
T cd02523 148 IISKAKN--------LEEIQGEYVGISKFSPEDADRLA 177 (229)
T ss_pred ecccCCC--------cchhceEEEeEEEECHHHHHHHH
Confidence 5544311 11235789999999999977653
No 77
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.67 E-value=2e-15 Score=140.79 Aligned_cols=178 Identities=19% Similarity=0.202 Sum_probs=116.3
Q ss_pred EEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-cC--------CeE
Q 023786 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-FG--------ADV 113 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~g--------~~v 113 (277)
|||||||.||||. ||+|+|++|+ |||+|+++.+.++ ++++|+|+++. +++.+++.+ ++ +++
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINS-GIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVTL 79 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhc-CCceEEEEeccChHHHHHHHHhccCccCccCCCEEE
Confidence 6999999999996 7999999999 8999999999998 69999999974 566666642 11 222
Q ss_pred Ee-----cCCcCCCcH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCC
Q 023786 114 IM-----TSESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP 186 (277)
Q Consensus 114 i~-----~~~~~~~g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~ 186 (277)
.. ..+....|+ +++..++..+.. +.+.++++.||+ +. ..++.++++.+.++ ++..++.+.+.. ..++
T Consensus 80 ~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~-l~-~~~l~~~l~~~~~~-~~~~ti~~~~~~---~~~~ 153 (361)
T TIGR02091 80 LPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDH-IY-KMDYEKMLDYHIES-GADVTIACIPVP---RKEA 153 (361)
T ss_pred eCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCE-EE-cCCHHHHHHHHHHc-CCCEEEEEEecC---hHhc
Confidence 11 011112454 568888877742 246799999999 43 55788899887653 232333233321 1233
Q ss_pred CceEE-EECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc
Q 023786 187 NRVKC-VVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (277)
Q Consensus 187 ~~~~v-~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 238 (277)
..+++ ..+.+|++..|.+++.... .. ..+....+.++|+|+|++++|..+
T Consensus 154 ~~~g~v~~d~~~~v~~~~ekp~~~~-~~-~~~~~~~~~~~Giyi~~~~~l~~~ 204 (361)
T TIGR02091 154 SRFGVMQVDEDGRIVDFEEKPANPP-SI-PGMPDFALASMGIYIFDKDVLKEL 204 (361)
T ss_pred ccccEEEECCCCCEEEEEECCCCcc-cc-cccccccEEeeeEEEEcHHHHHHH
Confidence 44433 4567788888877652111 00 001112378999999999987433
No 78
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.67 E-value=5.4e-16 Score=145.43 Aligned_cols=116 Identities=15% Similarity=0.134 Sum_probs=92.9
Q ss_pred CCCCCCceEEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCC
Q 023786 43 SKNFRSRVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR 121 (277)
Q Consensus 43 ~~~~~m~i~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~ 121 (277)
.+.+++++.+||||||+||||+ +|++++++|+|||+|+++++.. .+++|+|+++++....+ ..+++.++..+....
T Consensus 168 ~~~~~~~i~~iILAGG~SsRmG~~K~ll~~~Gk~ll~~~l~~l~~--~~~~vvV~~~~~~~~~~-~~~~v~~i~d~~~~~ 244 (369)
T PRK14490 168 GRAEEVPLSGLVLAGGRSSRMGSDKALLSYHESNQLVHTAALLRP--HCQEVFISCRAEQAEQY-RSFGIPLITDSYLDI 244 (369)
T ss_pred cccccCCceEEEEcCCccccCCCCcEEEEECCccHHHHHHHHHHh--hCCEEEEEeCCchhhHH-hhcCCcEEeCCCCCC
Confidence 3344567889999999999997 8999999999999999999975 37889998876543333 346788776554445
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
|...++..|++..+ .+.++++.||+||++++.++.+++..
T Consensus 245 Gpl~gi~~al~~~~--~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 245 GPLGGLLSAQRHHP--DAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CcHHHHHHHHHhCC--CCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 66778888887763 56789999999999999999998864
No 79
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.65 E-value=1.9e-15 Score=125.10 Aligned_cols=106 Identities=32% Similarity=0.473 Sum_probs=92.1
Q ss_pred EEEecCCCCcccc--ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 52 GIIPARFASSRFE--GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 52 aIIlAaG~ssRl~--~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
+||+|||+||||+ -||+++++|+|||.|+++++.+ .+++|+|+++ .+.+++++...|++++..+.. |-..-+
T Consensus 3 ~iiMAGGrGtRmg~~EKPlleV~GkpLI~~v~~al~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tpG~--GYv~Dl 78 (177)
T COG2266 3 AIIMAGGRGTRMGRPEKPLLEVCGKPLIDRVLEALRK--IVDEIIVAISPHTPKTKEYLESVGVKVIETPGE--GYVEDL 78 (177)
T ss_pred eEEecCCcccccCCCcCcchhhCCccHHHHHHHHHHh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcCCC--ChHHHH
Confidence 8999999999997 4999999999999999999987 5899999986 488889998888999876532 233458
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
..+++.+. ..++++.+|.||+++..|+.+++.+.
T Consensus 79 ~~al~~l~---~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 79 RFALESLG---TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred HHHHHhcC---CceEEEecccccCCHHHHHHHHHHHh
Confidence 88999884 37999999999999999999999876
No 80
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.64 E-value=3.4e-15 Score=128.14 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=86.6
Q ss_pred EEEecCCCCcccc------cccccccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH---cC-------Ce
Q 023786 52 GIIPARFASSRFE------GKPLVNILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ---FG-------AD 112 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~---~g-------~~ 112 (277)
|||||||.||||. ||+|+|++|+ |||+|+++.+.++ ++++|+|+++. +++.+++.+ ++ +.
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~-gi~~iivv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNS-GIRNVGVLTQYKSRSLNDHLGSGKEWDLDRKNGGLF 79 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHC-CCCEEEEEeCCChHHHHHHHhCCCcccCCCCCCCEE
Confidence 6899999999994 7999999998 9999999999987 79999999974 666666642 22 23
Q ss_pred EEec----CCcCCCcH-HHHHHHHHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEE
Q 023786 113 VIMT----SESCRNGT-ERCNEALQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (277)
Q Consensus 113 vi~~----~~~~~~g~-~~i~~al~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~ 172 (277)
++.. .+..+.|+ .++..|.+.+.. +.+.++++.||+ +...++.++++.++++ ++.++
T Consensus 80 ~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~--v~~~~~~~~l~~~~~~-~~~~t 142 (200)
T cd02508 80 ILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDH--IYNMDYREMLDFHIES-GADIT 142 (200)
T ss_pred EeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCE--EEecCHHHHHHHHHHc-CCCEE
Confidence 3331 12334454 468888887742 247799999999 4466899999888654 33344
No 81
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.3e-15 Score=134.99 Aligned_cols=178 Identities=17% Similarity=0.210 Sum_probs=125.9
Q ss_pred CceEEEEecCC--CCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHH----HHcCCeE
Q 023786 48 SRVVGIIPARF--ASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECC----QQFGADV 113 (277)
Q Consensus 48 m~i~aIIlAaG--~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~----~~~g~~v 113 (277)
|+..||||.|| +||||. ||||.|++|.|||+|-|+++.+.++..+|+++-= ++...+++ .++.+.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pv 80 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPV 80 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccch
Confidence 67889999998 789995 7999999999999999999999999999998863 34444443 3455555
Q ss_pred EecCCcCCCcHH-HHHHHHHHc-ccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEE
Q 023786 114 IMTSESCRNGTE-RCNEALQKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC 191 (277)
Q Consensus 114 i~~~~~~~~g~~-~i~~al~~~-~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v 191 (277)
-+-.++.+.|++ .+++--+++ ..+.+.|++++||... .--+++|+++++.. ++..++++++.+.+...|... +
T Consensus 81 rYL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCc--sfPl~~ml~ahr~~-g~~~tll~tkvs~e~asnfG~--l 155 (407)
T KOG1460|consen 81 RYLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCC--SFPLQDMLEAHRRY-GGIGTLLVTKVSREQASNFGC--L 155 (407)
T ss_pred hhhccCCCCCcccceeehhhHHhcCCCceEEEEecceec--CCcHHHHHHHHhhc-CCceEEEEEEecHhHhhccCe--e
Confidence 444455555654 344444443 3457899999999844 23478999988664 566777766654333333322 3
Q ss_pred EECC-CceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 192 VVDN-HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 192 ~~~~-~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
+.|+ .|+++.+.+||--+ .+..+|.|+|.|++++++.+.
T Consensus 156 V~dP~t~evlHYveKPsTf---------vSd~InCGvYlF~~eif~~i~ 195 (407)
T KOG1460|consen 156 VEDPSTGEVLHYVEKPSTF---------VSDIINCGVYLFTPEIFNAIA 195 (407)
T ss_pred eecCCcCceEEeecCcchh---------hhcccceeEEEecHHHHHHHH
Confidence 4563 48888887776221 356899999999999987654
No 82
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=7.3e-15 Score=127.16 Aligned_cols=168 Identities=19% Similarity=0.216 Sum_probs=121.4
Q ss_pred CceEEEEecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEec-C--chHHHHHHHHcC--CeEEecCCc
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D--DEKIAECCQQFG--ADVIMTSES 119 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt-~--~~~i~~~~~~~g--~~vi~~~~~ 119 (277)
+...|||||||.||||+ ||+|..++|+++|+|++++|.+. ++++++||+ + .+.+.++..+++ .+++.++..
T Consensus 2 ~~~kavILAAG~GsRlg~~~PK~Lvev~gr~ii~~~i~~L~~~-gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y 80 (239)
T COG1213 2 HPMKAVILAAGFGSRLGPDIPKALVEVGGREIIYRTIENLAKA-GITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDY 80 (239)
T ss_pred CceeEEEEecccccccCCCCCchhhhcCCeEeHHHHHHHHHHc-CCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCc
Confidence 34569999999999997 79999999999999999999998 799999999 4 366677777765 466777666
Q ss_pred CCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCce
Q 023786 120 CRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY 198 (277)
Q Consensus 120 ~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~ 198 (277)
..+++ .|+..|.+.+. +-++++++|. ++.+..+++++++-. ...++. ..+.. .+-+....+.+++|+
T Consensus 81 ~ktN~~~Sl~~akd~~~---~~fii~~sD~-vye~~~~e~l~~a~~---~~li~d-~~~~~----~~~~ea~kv~~e~G~ 148 (239)
T COG1213 81 EKTNTGYSLLLAKDYMD---GRFILVMSDH-VYEPSILERLLEAPG---EGLIVD-RRPRY----VGVEEATKVKDEGGR 148 (239)
T ss_pred ccCCceeEEeeehhhhc---CcEEEEeCCE-eecHHHHHHHHhCcC---CcEEEe-ccccc----cccCceeEEEecCCE
Confidence 55653 46788888884 3389999999 678888898887541 222221 11110 122223456788999
Q ss_pred EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 199 AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 199 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
+..+++..- ......+|+..++.+++....
T Consensus 149 i~~igK~l~-----------e~~~e~iGi~~l~~~i~~~~~ 178 (239)
T COG1213 149 IVEIGKDLT-----------EYDGEDIGIFILSDSIFEDTY 178 (239)
T ss_pred EehhcCCcc-----------cccceeeeeEEechHHHHHHH
Confidence 987776431 123577899999998776554
No 83
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.62 E-value=4.6e-15 Score=127.36 Aligned_cols=105 Identities=19% Similarity=0.227 Sum_probs=81.0
Q ss_pred CceEEEEecCCCCcccc-ccccccccc-cchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEec-CCcCCCcH
Q 023786 48 SRVVGIIPARFASSRFE-GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMT-SESCRNGT 124 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~-~K~l~~i~G-kpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~-~~~~~~g~ 124 (277)
+++.+||||||+|+||+ +|++++++| +|+|+|+++.+... +++|+|+++++.. ..+..++.. .....+..
T Consensus 7 ~~i~~vILAgG~s~RmG~~K~ll~~~g~~~ll~~~i~~l~~~--~~~vvvv~~~~~~-----~~~~~~v~d~~~~~~gpl 79 (196)
T PRK00560 7 DNIPCVILAGGKSSRMGENKALLPFGSYSSLLEYQYTRLLKL--FKKVYISTKDKKF-----EFNAPFLLEKESDLFSPL 79 (196)
T ss_pred cCceEEEECCcccccCCCCceEEEeCCCCcHHHHHHHHHHHh--CCEEEEEECchhc-----ccCCcEEecCCCCCCCcH
Confidence 57889999999999996 899999999 99999999999864 7899999986321 234555543 22222344
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHH
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~ 161 (277)
..+..++... +.++++++.||+||+++++++.++.
T Consensus 80 ~gi~~~l~~~--~~~~vlv~~~D~P~i~~~~i~~l~~ 114 (196)
T PRK00560 80 FGIINAFLTL--QTPEIFFISVDTPFVSFESIKKLCG 114 (196)
T ss_pred HHHHHHHHhc--CCCeEEEEecCcCcCCHHHHHHHHh
Confidence 4556666555 4689999999999999999999853
No 84
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.61 E-value=8.5e-15 Score=135.85 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=89.2
Q ss_pred ceEEEEecCCCCcccc-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHH
Q 023786 49 RVVGIIPARFASSRFE-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERC 127 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i 127 (277)
++.+||||||+|+||+ +|.+++++|+||++|+++.+.. .+++|+|+++++.... ....++.++.+.....|+..++
T Consensus 160 ~i~~IILAGGkSsRMG~dKaLL~~~GkpLl~~~ie~l~~--~~~~ViVv~~~~~~~~-~~~~~v~~I~D~~~~~GPlagI 236 (346)
T PRK14500 160 PLYGLVLTGGKSRRMGKDKALLNYQGQPHAQYLYDLLAK--YCEQVFLSARPSQWQG-TPLENLPTLPDRGESVGPISGI 236 (346)
T ss_pred CceEEEEeccccccCCCCcccceeCCccHHHHHHHHHHh--hCCEEEEEeCchHhhh-ccccCCeEEeCCCCCCChHHHH
Confidence 6789999999999997 8999999999999999999876 4789999987643221 1112455555555556788899
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+.|++... .+.++++.||+||++++.++.+++.+..
T Consensus 237 ~aaL~~~~--~~~~lVl~cDmP~l~~~~l~~L~~~~~~ 272 (346)
T PRK14500 237 LTALQSYP--GVNWLVVACDLAYLNSETVEKLLAHYRQ 272 (346)
T ss_pred HHHHHhCC--CCCEEEEECCcCCCCHHHHHHHHHhhhc
Confidence 99998764 3467899999999999999999987643
No 85
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.59 E-value=3.8e-14 Score=136.76 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=114.0
Q ss_pred eEEEEecCCCCcccc-------ccccccccc-cchHHHHHHHHhccCCCCeEEEecCch---HHHHHHHHcCCe---EEe
Q 023786 50 VVGIIPARFASSRFE-------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQFGAD---VIM 115 (277)
Q Consensus 50 i~aIIlAaG~ssRl~-------~K~l~~i~G-kpLi~~~i~~l~~~~~i~~IvVvt~~~---~i~~~~~~~g~~---vi~ 115 (277)
+.+||||||.||||. ||+|+++.| +|||+|+++++... ++++++|+++.+ .+.+.+..++.+ ++.
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~-~~~~iviv~~~~~~~~~~~~l~~~~~~~~~~i~ 79 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGL-PCSSPLVICNEEHRFIVAEQLREIGKLASNIIL 79 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcC-CCcCcEEecCHHHHHHHHHHHHHcCCCcceEEe
Confidence 359999999999994 799999976 89999999999887 588999999843 334455555532 333
Q ss_pred cCCcCCCcHHH-HHHHHHHcc---cCCCEEEEEcCCcccCCHHHHHHHHHHH---HcCCCcEEEEEeeecCCCCCCCCCc
Q 023786 116 TSESCRNGTER-CNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKAL---QAAPDAVFSTAVTSLKPEDAFDPNR 188 (277)
Q Consensus 116 ~~~~~~~g~~~-i~~al~~~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~---~~~~~~~v~~~~~~~~~~~~~d~~~ 188 (277)
++...||+. +..|...+. ...+.+++++||+++.+.+.+.++++.+ .++ ++++++...+. .++..
T Consensus 80 --Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~-~~lvtlgi~p~-----~p~t~ 151 (468)
T TIGR01479 80 --EPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAE-GKLVTFGIVPT-----HPETG 151 (468)
T ss_pred --cccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhc-CCEEEEEecCC-----CCCCC
Confidence 344455543 333333331 1245799999999988878888888764 233 55666554432 22234
Q ss_pred eEEE-ECC------CceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHh
Q 023786 189 VKCV-VDN------HGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLK 236 (277)
Q Consensus 189 ~~v~-~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~ 236 (277)
|+.+ .++ .+++..|.|||....... .-....++.|+|+|+|+.+.|.
T Consensus 152 YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~-~l~~g~~~wNsGif~~~~~~ll 205 (468)
T TIGR01479 152 YGYIRRGEPLAGEDVYQVQRFVEKPDLATAQA-YLESGDYYWNSGMFLFRASRYL 205 (468)
T ss_pred ceEEEeCCccCCCCceEEeEEEECCChHHHHH-HHhcCCeEEEeeEEEEEHHHHH
Confidence 5444 342 257888988863221100 0001247899999999965543
No 86
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.58 E-value=2.8e-14 Score=133.74 Aligned_cols=114 Identities=21% Similarity=0.305 Sum_probs=85.5
Q ss_pred CCceEEEEecCCCCccc-c-ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHc-CCeEEecCCcC-CC
Q 023786 47 RSRVVGIIPARFASSRF-E-GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQF-GADVIMTSESC-RN 122 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl-~-~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~-g~~vi~~~~~~-~~ 122 (277)
++++.+||||||+|+|| + +|+|++++|+|||+|+++++.. .+++|+|++..+. ..+.... ++.++...... .|
T Consensus 3 ~~~i~~VILAgG~s~Rmgg~~K~ll~i~Gkpll~~~i~~l~~--~~~~iivvv~~~~-~~~~~~~~~~~~i~d~~~g~~G 79 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMNGRDKALILLGGKPLIERVVDRLRP--QFARIHLNINRDP-ARYQDLFPGLPVYPDILPGFQG 79 (366)
T ss_pred CCCceEEEEcCCcccCCCCCCCceeEECCeeHHHHHHHHHHh--hCCEEEEEcCCCH-HHHHhhccCCcEEecCCCCCCC
Confidence 34578999999999999 4 8999999999999999999975 4889988665322 1121111 34444322211 34
Q ss_pred cHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 123 g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
..+++..|++.+ +.+++++++||+||++++.++++++.+..
T Consensus 80 ~~~si~~gl~~~--~~~~vlv~~~D~P~i~~~~i~~L~~~~~~ 120 (366)
T PRK14489 80 PLSGILAGLEHA--DSEYLFVVACDTPFLPENLVKRLSKALAI 120 (366)
T ss_pred hHHHHHHHHHhc--CCCcEEEeeCCcCCCCHHHHHHHHHHhhc
Confidence 457799999887 35789999999999999999999997654
No 87
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=2.2e-14 Score=122.61 Aligned_cols=115 Identities=35% Similarity=0.562 Sum_probs=97.5
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCc----hHHHHHHHHcCCeEEecCCcCCC
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGADVIMTSESCRN 122 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~----~~i~~~~~~~g~~vi~~~~~~~~ 122 (277)
|++|.+||-|+=+|||+|+|.|+|++|+|||+++++++++++.+++|+|.|.+ +.+++++..+|+.++.- ....
T Consensus 1 ~~~I~~IiQARmgStRLpgKvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~G~~vfrG--s~~d 78 (241)
T COG1861 1 MSMILVIIQARMGSTRLPGKVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSHGFYVFRG--SEED 78 (241)
T ss_pred CCcEEEEeeecccCccCCcchhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHcCeeEecC--CHHH
Confidence 56799999999999999999999999999999999999999889999999963 45667788889887642 2223
Q ss_pred cHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 123 GTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 123 g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
-..|...+++.. +.+.++-+.||.||++++.++..++.+.+
T Consensus 79 VL~Rf~~a~~a~--~~~~VVRvTGD~P~~dp~l~d~~v~~~l~ 119 (241)
T COG1861 79 VLQRFIIAIKAY--SADVVVRVTGDNPFLDPELVDAAVDRHLE 119 (241)
T ss_pred HHHHHHHHHHhc--CCCeEEEeeCCCCCCCHHHHHHHHHHHHh
Confidence 345677788877 46799999999999999999999988755
No 88
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.57 E-value=4.1e-14 Score=122.85 Aligned_cols=120 Identities=19% Similarity=0.214 Sum_probs=89.0
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc---hHHHHHHHHc------CCeEEe
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD---EKIAECCQQF------GADVIM 115 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~---~~i~~~~~~~------g~~vi~ 115 (277)
.|||||||.|+||. ||+|+|++|+|||+|+++.+.+. ++++|+|++++ +.+.++++.+ +..++.
T Consensus 2 ~aVILAgG~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~-g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 80 (214)
T cd04198 2 QAVILAGGGGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKA-GFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDEVT 80 (214)
T ss_pred EEEEEeCCCCCcCCccccCCCcccCEECCeeHHHHHHHHHHHC-CCCeEEEEECHHHHHHHHHHHHhcccccCcceeEEE
Confidence 59999999999994 79999999999999999999987 79999999984 3465666543 123333
Q ss_pred cCCcCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeee
Q 023786 116 TSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTS 177 (277)
Q Consensus 116 ~~~~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~ 177 (277)
..+....|+ ++++.+.+.+. +.++++.||. +...++..+++.+++. ++.+++...+
T Consensus 81 ~~~~~~~gt~~al~~~~~~i~---~d~lv~~~D~--i~~~~l~~~l~~h~~~-~~~~t~~~~~ 137 (214)
T cd04198 81 IVLDEDMGTADSLRHIRKKIK---KDFLVLSCDL--ITDLPLIELVDLHRSH-DASLTVLLYP 137 (214)
T ss_pred ecCCCCcChHHHHHHHHhhcC---CCEEEEeCcc--ccccCHHHHHHHHhcc-CCcEEEEEec
Confidence 333444555 45777777662 4489999995 6677899999988764 4556655544
No 89
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4.2e-13 Score=124.13 Aligned_cols=179 Identities=19% Similarity=0.171 Sum_probs=126.4
Q ss_pred CceEEEEecCCCCcccc------ccccccccccc-hHHHHHHHHhccCCCCeEEEecCch--HHHHHHHH----------
Q 023786 48 SRVVGIIPARFASSRFE------GKPLVNILGKP-MIQRTWERSKLATTLDHLVVATDDE--KIAECCQQ---------- 108 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~------~K~l~~i~Gkp-Li~~~i~~l~~~~~i~~IvVvt~~~--~i~~~~~~---------- 108 (277)
.++.|+|||+|.|+||. .||-+|++||- ||..+|.++..+ ++++|.|.|... .+.+++..
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNS-Gi~~I~VltQy~~~SL~~Hi~~G~~w~l~~~~ 82 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNS-GIRRIGVLTQYKSHSLNDHIGRGWPWDLDRKN 82 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEccccccc-CCCeEEEEeccchhHHHHHhhCCCcccccccc
Confidence 35789999999999996 59999999985 999999999998 799999999853 33344321
Q ss_pred cCCeEEecC------CcCCCcHHHHHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCC
Q 023786 109 FGADVIMTS------ESCRNGTERCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPE 181 (277)
Q Consensus 109 ~g~~vi~~~------~~~~~g~~~i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~ 181 (277)
.++.++... ..++|...++++-+..+. .+.|+++++.||+-+ .-+++.+++.|.+. ++.+|+.+.++..+
T Consensus 83 ~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIY--kmDy~~ml~~H~~~-gadiTv~~~~Vp~~ 159 (393)
T COG0448 83 GGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIY--KMDYSDMLDFHIES-GADVTVAVKEVPRE 159 (393)
T ss_pred CcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEE--ecCHHHHHHHHHHc-CCCEEEEEEECChH
Confidence 123333211 123344455665454443 357999999999944 56899999999764 56677777776543
Q ss_pred CCCCCCceEEEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhcc
Q 023786 182 DAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 182 ~~~d~~~~~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~ 239 (277)
+....+ -+..|++|+++.|.+||...+ ....+...|+|+|+.++|..+.
T Consensus 160 eas~fG--im~~D~~~~i~~F~eKp~~~~-------~~~~laSMgiYIf~~~~L~~~L 208 (393)
T COG0448 160 EASRFG--VMNVDENGRIIEFVEKPADGP-------PSNSLASMGIYIFNTDLLKELL 208 (393)
T ss_pred hhhhcC--ceEECCCCCEEeeeeccCcCC-------cccceeeeeeEEEcHHHHHHHH
Confidence 333333 234799999999999874311 1123789999999999998765
No 90
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.50 E-value=2.9e-13 Score=117.75 Aligned_cols=179 Identities=17% Similarity=0.110 Sum_probs=106.0
Q ss_pred EEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHH-c--------CCeE
Q 023786 51 VGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQ-F--------GADV 113 (277)
Q Consensus 51 ~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~-~--------g~~v 113 (277)
.|||||||.|+||. ||+++|++|+|||+|+++.+.++ ++++|+|+++. +.+.+++.+ + ++.+
T Consensus 2 ~avIlagg~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~-gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (216)
T cd02507 2 QAVVLADGFGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKA-GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDV 80 (216)
T ss_pred eEEEEeCCCccccCccccCCCcccceECCEEHHHHHHHHHHHC-CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEE
Confidence 58999999999994 79999999999999999999987 69999999874 444444432 1 1233
Q ss_pred EecCCcCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHH---HHcCCCcEEEEEeeecCCCC---CCCC
Q 023786 114 IMTSESCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA---LQAAPDAVFSTAVTSLKPED---AFDP 186 (277)
Q Consensus 114 i~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~---~~~~~~~~v~~~~~~~~~~~---~~d~ 186 (277)
....+....|+ .++..+...+. +.|+++.||. +...++..+++. ...+.++.+++......... ....
T Consensus 81 ~~~~~~~~~Gta~~l~~~~~~i~---~dflv~~gD~--i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (216)
T cd02507 81 ITSDLCESAGDALRLRDIRGLIR---SDFLLLSCDL--VSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTE 155 (216)
T ss_pred EEccCCCCCccHHHHHHHhhcCC---CCEEEEeCCE--eecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCC
Confidence 34433334454 45677776662 4489999997 445578888864 22233444443322211100 0111
Q ss_pred CceEEEECCC---ceEEeeecCCcCCCCCCCC------CCC---CCceEEEEEEeecHHHH
Q 023786 187 NRVKCVVDNH---GYAIYFSRGLIPYNKSGKV------NPQ---FPYLLHLGIQSYDSNFL 235 (277)
Q Consensus 187 ~~~~v~~~~~---g~~~~f~~~~~~~~~~~~~------~~~---~~~~~~~Giy~~~~~~l 235 (277)
+..-+..+++ +..+++.+++........+ .+. ...+.++++|++++++|
T Consensus 156 ~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 156 EEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 2233445665 5666665543211100000 000 23467778888887653
No 91
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=8.4e-13 Score=110.59 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=76.2
Q ss_pred EEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCc--hHHHHHHHHcCCeEEecCCcCC-C
Q 023786 52 GIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD--EKIAECCQQFGADVIMTSESCR-N 122 (277)
Q Consensus 52 aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~~~-~ 122 (277)
|||||||-||||. ||+|+.++|+|||+++++.+++. ++++|+||++. +...-.-.+|++++++++.... .
T Consensus 3 AIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~-gI~dI~IVvGYlkE~FeYLkdKy~vtLvyN~kY~~yN 81 (231)
T COG4750 3 AIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREA-GIDDITIVVGYLKEQFEYLKDKYDVTLVYNPKYREYN 81 (231)
T ss_pred eEEEecccccccccccccCChHHHHhcCcccHHHHHHHHHHC-CCceEEEEeeehHHHHHHHHHhcCeEEEeCchHHhhh
Confidence 9999999999994 79999999999999999999998 79999999995 4443334578999999875433 3
Q ss_pred cHHHHHHHHHHcccCCCEEEEEcCCccc
Q 023786 123 GTERCNEALQKLEKKYDIVVNIQGDEPL 150 (277)
Q Consensus 123 g~~~i~~al~~~~~~~d~vlv~~gD~P~ 150 (277)
...++..|.+.++ + .-++++|.-|
T Consensus 82 n~ySlyla~d~l~---n-tYiidsDnyl 105 (231)
T COG4750 82 NIYSLYLARDFLN---N-TYIIDSDNYL 105 (231)
T ss_pred hHHHHHHHHHHhc---c-cEEeccchHh
Confidence 4567888988884 2 3477999833
No 92
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.25 E-value=1.6e-10 Score=111.57 Aligned_cols=178 Identities=13% Similarity=0.125 Sum_probs=107.6
Q ss_pred CceEEEEecCCCCccc-c------ccccccccc-cchHHHHHHHHhccCCCCeEEEecCch---HHHHHHHHcC---CeE
Q 023786 48 SRVVGIIPARFASSRF-E------GKPLVNILG-KPMIQRTWERSKLATTLDHLVVATDDE---KIAECCQQFG---ADV 113 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl-~------~K~l~~i~G-kpLi~~~i~~l~~~~~i~~IvVvt~~~---~i~~~~~~~g---~~v 113 (277)
|++.+||||||.|||| | ||+|+++.| +|||+++++++... ++.+.+|+|+.. .+.+.+...+ .++
T Consensus 4 ~~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~-~~~~~iivt~~~~~~~v~~ql~~~~~~~~~i 82 (478)
T PRK15460 4 SKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGV-ECESPVVICNEQHRFIVAEQLRQLNKLTENI 82 (478)
T ss_pred CceEEEEECCCCccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhC-CCCCcEEEeCHHHHHHHHHHHHhcCCccccE
Confidence 5678999999999999 3 799999955 79999999999876 456666778742 2333333332 245
Q ss_pred EecCCcCCCcHHH-HHHHHHHcc-c--C-CCEEEEEcCCcccCCHHHHHHHHHHHHc--CCCcEEEEEeeecCCCCCCCC
Q 023786 114 IMTSESCRNGTER-CNEALQKLE-K--K-YDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDP 186 (277)
Q Consensus 114 i~~~~~~~~g~~~-i~~al~~~~-~--~-~d~vlv~~gD~P~i~~~~i~~li~~~~~--~~~~~v~~~~~~~~~~~~~d~ 186 (277)
+.- +...+|+. +..|...+. . + .+.++++++|+-.-+.+.+.+.++...+ ..+.++++-+.+. .|
T Consensus 83 i~E--P~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt------~P 154 (478)
T PRK15460 83 ILE--PAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD------LP 154 (478)
T ss_pred Eec--CCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC------CC
Confidence 543 33445543 333333332 1 1 3579999999966666667666654321 1266777655543 22
Q ss_pred Cc--eEEEECCC-------c--eEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHH
Q 023786 187 NR--VKCVVDNH-------G--YAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFL 235 (277)
Q Consensus 187 ~~--~~v~~~~~-------g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l 235 (277)
+. .++..++. + .+..|.+||-...... .-+...++=|+|+|+|+.+.+
T Consensus 155 eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~-yl~~G~y~WNsGiF~~~a~~~ 213 (478)
T PRK15460 155 ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQA-YVASGEYYWNSGMFLFRAGRY 213 (478)
T ss_pred CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHH-HHHcCCEEEecceeheeHHHH
Confidence 22 22333221 1 4667888874321100 001234788999999988665
No 93
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.18 E-value=6.3e-10 Score=100.51 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=107.1
Q ss_pred eEEEEecCCCCccc-c------ccccccc-cccchHHHHHHHHhccCCCCeEEEecCchHHH---HHHHHcCCe----EE
Q 023786 50 VVGIIPARFASSRF-E------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATDDEKIA---ECCQQFGAD----VI 114 (277)
Q Consensus 50 i~aIIlAaG~ssRl-~------~K~l~~i-~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~---~~~~~~g~~----vi 114 (277)
+..||||||+|||| | |||++++ ++++|++.|++++......++++|+|+.+... +-+.+.+.. ++
T Consensus 2 ~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~~~~~~il 81 (333)
T COG0836 2 MIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDIENAAGII 81 (333)
T ss_pred ceeEEEeCCCccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhhccccceE
Confidence 46899999999999 5 7999999 55999999999999855688999999964322 222322222 44
Q ss_pred ecCCcCCCcHH-HHHHHHHHc-cc-CCCEEEEEcCCcccCCHHHHHHHHHHHHc--CCCcEEEEEeeecCCCCCCCCCc-
Q 023786 115 MTSESCRNGTE-RCNEALQKL-EK-KYDIVVNIQGDEPLIEPEIIDGVVKALQA--APDAVFSTAVTSLKPEDAFDPNR- 188 (277)
Q Consensus 115 ~~~~~~~~g~~-~i~~al~~~-~~-~~d~vlv~~gD~P~i~~~~i~~li~~~~~--~~~~~v~~~~~~~~~~~~~d~~~- 188 (277)
.-| ....|+ .+..|...+ .. ....++++++|+-.-+.+.+.+.++...+ ..+.+++.-..+. .|+.
T Consensus 82 lEP--~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt------~PeTG 153 (333)
T COG0836 82 LEP--EGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT------RPETG 153 (333)
T ss_pred ecc--CCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC------CCccC
Confidence 432 223343 343333222 21 23479999999966666667666654422 2246676555442 2322
Q ss_pred -eEEEECC-----Cce-EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHH-Hhhc
Q 023786 189 -VKCVVDN-----HGY-AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNF-LKIY 238 (277)
Q Consensus 189 -~~v~~~~-----~g~-~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~-l~~~ 238 (277)
.++..++ +++ +..|.+||..+.... --....++-|.|+++|+... |+.+
T Consensus 154 YGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~-yv~sG~y~WNSGmF~Fra~~~l~e~ 210 (333)
T COG0836 154 YGYIETGESIAENGVYKVDRFVEKPDLETAKK-YVESGEYLWNSGMFLFRASVFLEEL 210 (333)
T ss_pred cceeecCcccccCCceEeeeeeeCCCHHHHHH-HHHcCceEeeccceEEEHHHHHHHH
Confidence 2233322 233 445777763321100 00112478999999998755 4443
No 94
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.2e-10 Score=106.85 Aligned_cols=116 Identities=16% Similarity=0.170 Sum_probs=80.7
Q ss_pred CCCceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecCchHH---HHHHH-HcCC----
Q 023786 46 FRSRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKI---AECCQ-QFGA---- 111 (277)
Q Consensus 46 ~~m~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i---~~~~~-~~g~---- 111 (277)
.|+.+.+||+|+|+||||| ||+|+|++++|||+|.++-+.++ ++.+|+|++..++. +..+. .+..
T Consensus 6 ~~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~-gfteiiVv~~e~e~~~i~~al~~~~~l~~~~ 84 (433)
T KOG1462|consen 6 PMSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQA-GFTEIIVVVNEDEKLDIESALGSNIDLKKRP 84 (433)
T ss_pred chHHhhhheeecCCceechhhhhhcchhhcccCCcceeeeehhHHHhc-CCeEEEEEecHHHHHHHHHHHhcCCcccccc
Confidence 3566789999999999998 79999999999999999999998 79999999986443 33332 1111
Q ss_pred -eEEe-cC-CcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 112 -DVIM-TS-ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 112 -~vi~-~~-~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
.+.+ .. ++..|..++++.--..++ .+.|+++.||. ++.-.+..+++.|+..
T Consensus 85 ~~v~ip~~~~~d~gtadsLr~Iy~kik--S~DflvlsCD~--Vtdv~l~~lvd~FR~~ 138 (433)
T KOG1462|consen 85 DYVEIPTDDNSDFGTADSLRYIYSKIK--SEDFLVLSCDF--VTDVPLQPLVDKFRAT 138 (433)
T ss_pred cEEEeecccccccCCHHHHhhhhhhhc--cCCEEEEeccc--ccCCCcHHHHHHHhcc
Confidence 1111 11 111122234444434443 33489999994 7777889999999864
No 95
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.05 E-value=1.5e-09 Score=91.40 Aligned_cols=97 Identities=12% Similarity=0.130 Sum_probs=72.0
Q ss_pred ccccccccc--cchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHc-ccCCCEE
Q 023786 65 GKPLVNILG--KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKL-EKKYDIV 141 (277)
Q Consensus 65 ~K~l~~i~G--kpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~-~~~~d~v 141 (277)
+|.+++++| +|||+|+++.+.. .+++|+|++++++ . ....++.++.......|...++..|++.+ ..+.+++
T Consensus 4 dK~ll~~~g~~~~ll~~~~~~l~~--~~~~iivv~~~~~--~-~~~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~ 78 (178)
T PRK00576 4 DKATLPLPGGTTTLVEHVVGIVGQ--RCAPVFVMAAPGQ--P-LPELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA 78 (178)
T ss_pred CCEeeEeCCCCcCHHHHHHHHHhh--cCCEEEEECCCCc--c-cccCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence 799999999 9999999998764 5899999997532 1 12345666543333335566677677654 2246899
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+++.||+|++++++++++++.+.+.
T Consensus 79 lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 79 FVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 9999999999999999999876543
No 96
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=98.91 E-value=2.5e-08 Score=85.01 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=72.2
Q ss_pred cchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCH
Q 023786 74 KPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEP 153 (277)
Q Consensus 74 kpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~ 153 (277)
+|||+|+++.+.+. .+++++|+++++++.+++..+++.++.++. .|..+++.+|++.+..+.++++++.||+||+++
T Consensus 30 ~~ll~~~l~~l~~~-~~~~vvvv~~~~~~~~~~~~~~v~~i~~~~--~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~ 106 (195)
T TIGR03552 30 LAMLRDVITALRGA-GAGAVLVVSPDPALLEAARNLGAPVLRDPG--PGLNNALNAALAEAREPGGAVLILMADLPLLTP 106 (195)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEECCCHHHHHHHHhcCCEEEecCC--CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCH
Confidence 69999999999987 468899999887777777677888776543 255578999998765445789999999999999
Q ss_pred HHHHHHHHHHHc
Q 023786 154 EIIDGVVKALQA 165 (277)
Q Consensus 154 ~~i~~li~~~~~ 165 (277)
++++++++.+.+
T Consensus 107 ~~i~~l~~~~~~ 118 (195)
T TIGR03552 107 RELKRLLAAATE 118 (195)
T ss_pred HHHHHHHHhccc
Confidence 999999987754
No 97
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.60 E-value=2.7e-06 Score=76.56 Aligned_cols=183 Identities=14% Similarity=0.045 Sum_probs=102.7
Q ss_pred eEEEEecCCCCcccc---cccccccc---ccchHHHHHHHHhcc-------CCCCeEEEecC--chHHHHHHHHcC---C
Q 023786 50 VVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLA-------TTLDHLVVATD--DEKIAECCQQFG---A 111 (277)
Q Consensus 50 i~aIIlAaG~ssRl~---~K~l~~i~---GkpLi~~~i~~l~~~-------~~i~~IvVvt~--~~~i~~~~~~~g---~ 111 (277)
+.+||||||.||||+ ||++++++ |+|++++.++++.+. ..+..+++.++ ++++.++++++. .
T Consensus 1 va~viLaGG~GtRLg~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~~~~~ 80 (266)
T cd04180 1 VAVVLLAGGLGTRLGKDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKINQKNS 80 (266)
T ss_pred CEEEEECCCCccccCCCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcCCCCC
Confidence 368999999999996 89999999 999999999999762 23555555554 366777776643 1
Q ss_pred eE-EecC--------------------CcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 112 DV-IMTS--------------------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 112 ~v-i~~~--------------------~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
.+ .+.. ...+.|.+.+..+|.. + .....++.+.+.|.++....+-. ++-.+
T Consensus 81 ~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~-~lG~~ 159 (266)
T cd04180 81 YVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPL-FIGIA 159 (266)
T ss_pred ceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHH-HHHHH
Confidence 11 1111 1223344445555432 2 23468999999999888664443 23333
Q ss_pred HcCCCcEEEEEeeecCCCCCCCCCceEEEECCC-ceE--EeeecCCcCCCCCC------CC-CCCCCceEEEEEEeecHH
Q 023786 164 QAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNH-GYA--IYFSRGLIPYNKSG------KV-NPQFPYLLHLGIQSYDSN 233 (277)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~-g~~--~~f~~~~~~~~~~~------~~-~~~~~~~~~~Giy~~~~~ 233 (277)
..+ ++.+..-+.+- ......+++....+ |+. +.+++-+....... .. ..-.....|+....|+-+
T Consensus 160 ~~~-~~~~~~kvv~K----~~~d~k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~ 234 (266)
T cd04180 160 IQN-RKAINQKVVPK----TRNEESGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLV 234 (266)
T ss_pred HHc-CCCEEEEEEEC----CCCCCeEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHH
Confidence 322 22334333321 11112344433222 553 34443211100000 00 011235688899999988
Q ss_pred HHhhc
Q 023786 234 FLKIY 238 (277)
Q Consensus 234 ~l~~~ 238 (277)
.++..
T Consensus 235 ~l~~~ 239 (266)
T cd04180 235 EFKDR 239 (266)
T ss_pred HHHHH
Confidence 88766
No 98
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.51 E-value=3.6e-06 Score=77.76 Aligned_cols=181 Identities=17% Similarity=0.147 Sum_probs=101.3
Q ss_pred ceEEEEecCCCCcccc---cccccccc---ccchHHHHHHHHhccC-----------CCCeEEEecC---chHHHHHHHH
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNIL---GKPMIQRTWERSKLAT-----------TLDHLVVATD---DEKIAECCQQ 108 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i~---GkpLi~~~i~~l~~~~-----------~i~~IvVvt~---~~~i~~~~~~ 108 (277)
++.+||||||.||||+ ||++++++ |+|++++.++++++.. .+ .+++.|+ ++.+.+++++
T Consensus 15 ~va~viLaGG~GTRLg~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~i-p~~imtS~~t~~~t~~~~~~ 93 (323)
T cd04193 15 KVAVLLLAGGQGTRLGFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPI-PWYIMTSEATHEETRKFFKE 93 (323)
T ss_pred CEEEEEECCCcccccCCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCc-eEEEEcChhHhHHHHHHHHh
Confidence 5779999999999997 89999997 7999999999998742 23 3556665 4677777754
Q ss_pred ---cCC---eEE--ecC-------------------CcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHH
Q 023786 109 ---FGA---DVI--MTS-------------------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPE 154 (277)
Q Consensus 109 ---~g~---~vi--~~~-------------------~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~ 154 (277)
+|. ++. ... ...+.|...+..+|.. + ....+++.+.+.|.++...-
T Consensus 94 ~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L~~~~ 173 (323)
T cd04193 94 NNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNILVKVA 173 (323)
T ss_pred CCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccccccc
Confidence 233 222 110 1133455556665533 2 13468999999999865332
Q ss_pred HHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceE--EeeecCCcCCCCCCCCCCC---CCceEEEEEEe
Q 023786 155 IIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA--IYFSRGLIPYNKSGKVNPQ---FPYLLHLGIQS 229 (277)
Q Consensus 155 ~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~--~~f~~~~~~~~~~~~~~~~---~~~~~~~Giy~ 229 (277)
+- .++..+... ++.+++-+.+-. ..-..++++...+|+. +.+++- |.......... .....|+.+.+
T Consensus 174 Dp-~~lG~~~~~-~~~~~~kvv~k~----~~~ekvG~l~~~~g~~~vvEysel--~~~~~~~~~~~g~l~f~~~ni~~~~ 245 (323)
T cd04193 174 DP-VFIGFCISK-GADVGAKVVRKR----YPTEKVGVVVLVDGKPQVVEYSEI--SDELAEKRDADGELQYNAGNIANHF 245 (323)
T ss_pred CH-HHhHHHHHc-CCceEEEEEECC----CCCCceeEEEEECCeEEEEEeecC--CHHHHhccCcCCcEecccchHhhhe
Confidence 22 223333222 344554443321 1122344443345654 344442 21100000011 11244556778
Q ss_pred ecHHHHhhc
Q 023786 230 YDSNFLKIY 238 (277)
Q Consensus 230 ~~~~~l~~~ 238 (277)
|+-++|+..
T Consensus 246 fsl~fl~~~ 254 (323)
T cd04193 246 FSLDFLEKA 254 (323)
T ss_pred eCHHHHHHH
Confidence 888888765
No 99
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.27 E-value=3.6e-05 Score=74.50 Aligned_cols=180 Identities=17% Similarity=0.113 Sum_probs=100.6
Q ss_pred ceEEEEecCCCCcccc---ccccccc---cccchHHHHHHHHhccC------------CCCeEEEecC---chHHHHHHH
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT------------TLDHLVVATD---DEKIAECCQ 107 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i---~GkpLi~~~i~~l~~~~------------~i~~IvVvt~---~~~i~~~~~ 107 (277)
++.+||||||.||||+ ||+++++ .|+||+++.++++.... ..-.++|.|. ++.+.++++
T Consensus 106 kvavViLAGG~GTRLg~~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t~~~f~ 185 (482)
T PTZ00339 106 EVAVLILAGGLGTRLGSDKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQTRQFLE 185 (482)
T ss_pred CeEEEEECCCCcCcCCCCCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHHHHHHH
Confidence 5789999999999997 8999999 59999999999998641 1124555554 356667765
Q ss_pred Hc---CC---eE--Eec-------CC-------------cCCCcHHHHHHHHHH------cc-cCCCEEEEEcCCcccC-
Q 023786 108 QF---GA---DV--IMT-------SE-------------SCRNGTERCNEALQK------LE-KKYDIVVNIQGDEPLI- 151 (277)
Q Consensus 108 ~~---g~---~v--i~~-------~~-------------~~~~g~~~i~~al~~------~~-~~~d~vlv~~gD~P~i- 151 (277)
++ |. .+ +.+ .. ..+.|.+.++.+|.. +. ..-+++.+...|.++.
T Consensus 186 ~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L~k 265 (482)
T PTZ00339 186 ENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISIDNILAK 265 (482)
T ss_pred hccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecCccccc
Confidence 32 21 11 111 00 122355556666543 21 2467899999999865
Q ss_pred --CHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCce--EEeeecCCcCCCCCCC-C-CCC-CCceEE
Q 023786 152 --EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGY--AIYFSRGLIPYNKSGK-V-NPQ-FPYLLH 224 (277)
Q Consensus 152 --~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~--~~~f~~~~~~~~~~~~-~-~~~-~~~~~~ 224 (277)
+|..+--+++ .+.. .++..+.+. .....++++...+|+ ++.+++-. +...... . +.. .-...|
T Consensus 266 ~~DP~flG~~~~---~~~~-~~~~kvvk~-----~~~EkvG~~~~~~g~~~vvEYsEi~-~~~~~~~~~~~g~l~f~~gn 335 (482)
T PTZ00339 266 VLDPEFIGLASS---FPAH-DVLNKCVKR-----EDDESVGVFCLKDYEWQVVEYTEIN-ERILNNDELLTGELAFNYGN 335 (482)
T ss_pred ccCHHHhHHHHH---CCch-hheeeeecC-----CCCCceeEEEEeCCcccEEEEeccC-hhhhhcccccCCeecccccc
Confidence 4544433332 2220 222222222 122345554333443 34445421 1111100 0 011 124678
Q ss_pred EEEEeecHHHHhhc
Q 023786 225 LGIQSYDSNFLKIY 238 (277)
Q Consensus 225 ~Giy~~~~~~l~~~ 238 (277)
++.+.|+.++|+..
T Consensus 336 I~~h~fsl~fl~~~ 349 (482)
T PTZ00339 336 ICSHIFSLDFLKKV 349 (482)
T ss_pred eEEEEEEHHHHHHH
Confidence 89999999999865
No 100
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=7e-05 Score=73.19 Aligned_cols=215 Identities=18% Similarity=0.237 Sum_probs=128.0
Q ss_pred CceEEEEecCCCCcccc------ccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHcC----Ce-EE
Q 023786 48 SRVVGIIPARFASSRFE------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFG----AD-VI 114 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~g----~~-vi 114 (277)
.+..||++|=-.-+||. |+.|+|+.+.|||+|+++-|.++ ++.+|+|.+. ..+|.+++++.. .. .+
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~a-gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v 101 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERA-GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIV 101 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeecCchHHHHHHHHHHhc-CceEEEEEecccHHHHHHHHhhccccccccceE
Confidence 46889999999999994 68999999999999999999988 7999999986 578888876411 11 11
Q ss_pred ecCCcCCCcHHHHHHHHHHccc---CCCEEEEEcCCcccCCHHHHHHHHHHHH----cCCCcEEEEEeeecCCCCCCCCC
Q 023786 115 MTSESCRNGTERCNEALQKLEK---KYDIVVNIQGDEPLIEPEIIDGVVKALQ----AAPDAVFSTAVTSLKPEDAFDPN 187 (277)
Q Consensus 115 ~~~~~~~~g~~~i~~al~~~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~----~~~~~~v~~~~~~~~~~~~~d~~ 187 (277)
.+ ...++..++-.+++.+.. ..+.|+++.||. ++.-.+.++++.|+ +..++++|+...+.. ....++
T Consensus 102 ~t--i~s~~~~S~GDamR~id~k~litgDFiLVsgd~--vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~s--t~~~~~ 175 (673)
T KOG1461|consen 102 VT--ICSGESRSVGDAMRDIDEKQLITGDFILVSGDT--VSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESS--TRETTE 175 (673)
T ss_pred EE--EcCCCcCcHHHHHHHHHhcceeecceEEEeCCe--eecCchHHHHHHHHHHhhhCccceEEEEEeccc--cccCCc
Confidence 11 111223345667766642 245688889998 55678899998883 345677776554431 112233
Q ss_pred ceEEEEC-CCceEEeeecCC-----cCCCCCCCCCCC----CCceEEEEEEeecHHHHhhccCCCCCCCccccChH--HH
Q 023786 188 RVKCVVD-NHGYAIYFSRGL-----IPYNKSGKVNPQ----FPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE--QL 255 (277)
Q Consensus 188 ~~~v~~~-~~g~~~~f~~~~-----~~~~~~~~~~~~----~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~--~l 255 (277)
.+-++.| ...+.++|.+-- .....+.....+ ...+....|-+-+++++..|..+ ..|...+++- .|
T Consensus 176 ~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dN--FDyq~r~DfV~GvL 253 (673)
T KOG1461|consen 176 QVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDN--FDYQTRDDFVRGVL 253 (673)
T ss_pred ceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhc--ccceehhhhhhhhh
Confidence 3333444 345667765300 000000000000 11233446677788888777432 2343444332 11
Q ss_pred HHHHcCCeeEEEEeee
Q 023786 256 KVLENGYKMKVQQTYF 271 (277)
Q Consensus 256 ~~le~g~~v~~~~~~~ 271 (277)
--=-.|++++++....
T Consensus 254 ~~dilg~kI~~~~~~~ 269 (673)
T KOG1461|consen 254 VDDILGYKIHVHVLSS 269 (673)
T ss_pred hhhhcCCeEEEEEcCh
Confidence 1113577888877543
No 101
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.64 E-value=0.0029 Score=57.86 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=101.8
Q ss_pred ceEEEEecCCCCcccc---ccccccc-cccchHHHHHHHHhccC---CCC-eEEEecC---chHHHHHHHHcCC---eEE
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFGA---DVI 114 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i-~GkpLi~~~i~~l~~~~---~i~-~IvVvt~---~~~i~~~~~~~g~---~vi 114 (277)
++.+|+||||.||||+ +|-++++ .|+++++..+++++... +.+ ..++-|+ +++..+++++++. .+.
T Consensus 3 kvavl~LaGG~GTRLG~~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v~ 82 (300)
T cd00897 3 KLVVLKLNGGLGTSMGCTGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDIH 82 (300)
T ss_pred cEEEEEecCCcccccCCCCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCeE
Confidence 5789999999999997 7999998 68999999999886421 111 4566664 4667777766541 111
Q ss_pred -ec--------------------C---CcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 115 -MT--------------------S---ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 115 -~~--------------------~---~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
+. + ...+.|...+..+|.. + ....+++.+.+.|. +...-|- .++..+
T Consensus 83 ~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDN-L~a~~Dp-~~lg~~ 160 (300)
T cd00897 83 TFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDN-LGATVDL-RILNHM 160 (300)
T ss_pred EEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEeccc-ccccCCH-HHHHHH
Confidence 10 0 1122344445555533 1 22468999999998 5432222 233333
Q ss_pred HcCCCcEEEEEeeecCCCCCCCC-CceEEEECCCce--EEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc
Q 023786 164 QAAPDAVFSTAVTSLKPEDAFDP-NRVKCVVDNHGY--AIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (277)
Q Consensus 164 ~~~~~~~v~~~~~~~~~~~~~d~-~~~~v~~~~~g~--~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 238 (277)
..+ ++.+++-+++- .++ ..++++...+|+ ++.+++-+.+...+.. ....-.+.|++.+.|+-++|+..
T Consensus 161 ~~~-~~~~~~evv~K-----t~~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~-~~~~~~~~nt~n~~~~l~~L~~~ 231 (300)
T cd00897 161 VDN-KAEYIMEVTDK-----TRADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFK-SIKKFKIFNTNNLWVNLKAVKRV 231 (300)
T ss_pred Hhc-CCceEEEEeec-----CCCCCcccEEEEECCEEEEEEeccCCHHHHHhhc-CcccceEEEEeEEEEEHHHHHHH
Confidence 332 34455433331 122 234554444566 4445543211100000 11123478899999998888765
No 102
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.53 E-value=0.0012 Score=64.10 Aligned_cols=183 Identities=17% Similarity=0.170 Sum_probs=101.4
Q ss_pred CceEEEEecCCCCcccc---ccccccc---cccchHHHHHHHHhccC-------------CCC-eEEEecC---chHHHH
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------------TLD-HLVVATD---DEKIAE 104 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i---~GkpLi~~~i~~l~~~~-------------~i~-~IvVvt~---~~~i~~ 104 (277)
-++.+|+||||.||||+ ||-+.+| .|+++++...+++.... .+. ..+|.|+ +++..+
T Consensus 115 gkvavvlLAGGqGTRLG~~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~~T~~ 194 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLGSSDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDEATRK 194 (493)
T ss_pred CCEEEEEeCCCcccccCCCCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhHHHHH
Confidence 36788999999999997 7988766 68999999999864321 111 3466665 366777
Q ss_pred HHHHc---CC---eEE-ecC--------------------CcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCccc
Q 023786 105 CCQQF---GA---DVI-MTS--------------------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPL 150 (277)
Q Consensus 105 ~~~~~---g~---~vi-~~~--------------------~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~ 150 (277)
+++++ |. .+. +.. ...+.|.+.++.+|.. + ....+++.+...|.++
T Consensus 195 ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vDN~L 274 (493)
T PLN02435 195 FFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGVDNAL 274 (493)
T ss_pred HHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEeccccc
Confidence 77643 21 121 110 1234555667666643 2 1246889999999987
Q ss_pred CCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCC-CceEEE-E-CCCceE--EeeecCCcCCCCCCCCCCC----CCc
Q 023786 151 IEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDP-NRVKCV-V-DNHGYA--IYFSRGLIPYNKSGKVNPQ----FPY 221 (277)
Q Consensus 151 i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~-~~~~v~-~-~~~g~~--~~f~~~~~~~~~~~~~~~~----~~~ 221 (277)
...-+- .++..+... ++.+++-+.+- .+| ..++++ + +.+|+. +.+++-+ +.... .+.++ .-.
T Consensus 275 ~~~~DP-~flG~~~~~-~~d~~~kVv~K-----~~~~EkvG~i~~~~~~g~~~vvEYsEl~-~~~~~-~~~~~~g~L~~~ 345 (493)
T PLN02435 275 VRVADP-TFLGYFIDK-GVASAAKVVRK-----AYPQEKVGVFVRRGKGGPLTVVEYSELD-QAMAS-AINQQTGRLRYC 345 (493)
T ss_pred ccccCH-HHHHHHHhc-CCceEEEeeec-----CCCCCceeEEEEecCCCCEEEEEeccCC-HHHHh-ccCccccccccc
Confidence 533222 223333322 33444433321 122 234443 2 356663 3344321 11100 00011 224
Q ss_pred eEEEEEEeecHHHHhhcc
Q 023786 222 LLHLGIQSYDSNFLKIYP 239 (277)
Q Consensus 222 ~~~~Giy~~~~~~l~~~~ 239 (277)
..|++.++|+.++|+.+.
T Consensus 346 ~gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 346 WSNVCLHMFTLDFLNQVA 363 (493)
T ss_pred hhhHHHhhccHHHHHHHH
Confidence 688899999999998763
No 103
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=97.47 E-value=0.0023 Score=58.80 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=99.5
Q ss_pred EEEEecCCCCcccc---ccccccc---cccchHHHHHHHHhccC-------CC-CeEEEecC---chHHHHHHHHc---C
Q 023786 51 VGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLAT-------TL-DHLVVATD---DEKIAECCQQF---G 110 (277)
Q Consensus 51 ~aIIlAaG~ssRl~---~K~l~~i---~GkpLi~~~i~~l~~~~-------~i-~~IvVvt~---~~~i~~~~~~~---g 110 (277)
.+|+||||.||||+ ||-++++ .|+++++..++++++.. +. -..+|.|+ +++..++++++ |
T Consensus 2 a~vllaGG~GTRLG~~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n~yFG 81 (315)
T cd06424 2 VFVLVAGGLGERLGYSGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEENNYFG 81 (315)
T ss_pred EEEEecCCCccccCCCCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHCCccC
Confidence 57899999999997 8999998 69999999999886532 11 14566665 36666777642 2
Q ss_pred C---eE--E-------ec------------C---CcCCCcHHHHHHHHHHc-------ccCCCEEEEEcCCcccCCHHHH
Q 023786 111 A---DV--I-------MT------------S---ESCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLIEPEII 156 (277)
Q Consensus 111 ~---~v--i-------~~------------~---~~~~~g~~~i~~al~~~-------~~~~d~vlv~~gD~P~i~~~~i 156 (277)
. ++ + .. + ...+.|.+.+..+|..- ....+++.+..-|.++....+-
T Consensus 82 l~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~~adP 161 (315)
T cd06424 82 LEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAFKAIP 161 (315)
T ss_pred CCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhhccCh
Confidence 1 11 1 00 0 11245666677666432 1346889999999998754221
Q ss_pred HHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEE---CCCceE----EeeecCCcCC---CC--CCCCCC---CCCc
Q 023786 157 DGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVV---DNHGYA----IYFSRGLIPY---NK--SGKVNP---QFPY 221 (277)
Q Consensus 157 ~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~---~~~g~~----~~f~~~~~~~---~~--~~~~~~---~~~~ 221 (277)
.++-.... .++.++..+.+. .+.+.++++. ..+|+. +.+++=. +. .. +....+ -..+
T Consensus 162 -~fiG~~~~-~~~d~~~k~v~~-----~~~E~vG~~~~~~~~~g~~~v~nvEYsel~-~~~~~~~~~~g~~~~~~~~s~f 233 (315)
T cd06424 162 -AVLGVSAT-KSLDMNSLTVPR-----KPKEAIGALCKLTKNNGKSMTINVEYNQLD-PLLRASGKDDGDVDDKTGFSPF 233 (315)
T ss_pred -hhEEEEec-CCCceEeEEEeC-----CCCCceeeEEEEecCCCceEEEEEEeecCC-HHHHhcCCCCCCcccccccccC
Confidence 22222122 244455443332 1223455442 355553 3444311 11 00 000000 1234
Q ss_pred eEEEEEEeecHHHHhh
Q 023786 222 LLHLGIQSYDSNFLKI 237 (277)
Q Consensus 222 ~~~~Giy~~~~~~l~~ 237 (277)
-.|++.++|+-+.+..
T Consensus 234 ~gNi~~~~f~l~~~~~ 249 (315)
T cd06424 234 PGNINQLVFSLGPYMD 249 (315)
T ss_pred CCeeeeEEEeHHHHHH
Confidence 7899999998777654
No 104
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=97.27 E-value=0.0021 Score=54.56 Aligned_cols=105 Identities=24% Similarity=0.336 Sum_probs=73.5
Q ss_pred EEEec---CCCCcccc-------ccccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEecCCcCC
Q 023786 52 GIIPA---RFASSRFE-------GKPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIMTSESCR 121 (277)
Q Consensus 52 aIIlA---aG~ssRl~-------~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~ 121 (277)
+|||- ++.-||+. +|.+. .-||.+++.++... +.+|.|++.++++.....+. ++... .
T Consensus 3 ~iIPvk~~~~aKTRLs~~lS~eeRe~~~----laML~dvi~Al~~~--~~~i~Vvtpde~~~~~a~~~--~vl~d----~ 70 (210)
T COG1920 3 AIIPVKRLADAKTRLSPVLSAEERENFA----LAMLVDVLGALAGV--LGEITVVTPDEEVLVPATKL--EVLAD----P 70 (210)
T ss_pred eEEeccccCcchhccccccCHHHHHHHH----HHHHHHHHHHhhhh--cCCceEEcCChHhhhhcccc--eeeec----c
Confidence 67774 46778885 35543 36899999999764 78999999987776555433 44432 1
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcE
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAV 170 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~ 170 (277)
+-.+.+..+++.+... +.++++.+|.|++++++++++++..+. ++.+
T Consensus 71 dLN~Ai~aa~~~~~~p-~~v~vvmaDLPLl~~~~i~~~~~~~~d-~dvv 117 (210)
T COG1920 71 DLNTAINAALDEIPLP-SEVIVVMADLPLLSPEHIERALSAAKD-ADVV 117 (210)
T ss_pred chHHHHHHHHhhCCCC-cceEEEecccccCCHHHHHHHHHhcCC-CcEE
Confidence 2223467777777533 569999999999999999999987644 3433
No 105
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=97.27 E-value=0.015 Score=56.34 Aligned_cols=183 Identities=9% Similarity=0.053 Sum_probs=101.8
Q ss_pred CceEEEEecCCCCcccc---ccccccc-cccchHHHHHHHHhccC---CCC-eEEEecC---chHHHHHHHHcC---CeE
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLAT---TLD-HLVVATD---DEKIAECCQQFG---ADV 113 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i-~GkpLi~~~i~~l~~~~---~i~-~IvVvt~---~~~i~~~~~~~g---~~v 113 (277)
-++.+|.||||.||||| ||-++++ .|+++++..++++.... +.+ ..++-|+ +++..+++++++ .++
T Consensus 78 ~k~avlkLnGGlGTrmG~~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i 157 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEI 157 (469)
T ss_pred hcEEEEEecCCcccccCCCCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccce
Confidence 36789999999999997 8999998 78999988888875421 222 3456554 466777777654 222
Q ss_pred E-e-c----------------C------CcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHHHHHHHHHH
Q 023786 114 I-M-T----------------S------ESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (277)
Q Consensus 114 i-~-~----------------~------~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~~i~~li~~ 162 (277)
. + + . +..+.|.+.++.+|.. + ....+++++.+.|. +...-|. .++..
T Consensus 158 ~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDN-Lga~vDp-~~lg~ 235 (469)
T PLN02474 158 HTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDN-LGAIVDL-KILNH 235 (469)
T ss_pred EEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCc-cccccCH-HHHHH
Confidence 1 1 0 0 0234454445555532 2 23468999999998 5322222 23333
Q ss_pred HHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceE--EeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhc
Q 023786 163 LQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYA--IYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIY 238 (277)
Q Consensus 163 ~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~--~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~ 238 (277)
+..+ ++.+++-+++-. ..|. .++++...+|+. +.+++-+.+...... ....-.+.|++.+.|+-++|+..
T Consensus 236 ~~~~-~~e~~~ev~~Kt---~~d~-kgG~l~~~dgk~~lvEysqvp~e~~~~f~-~~~kf~~fNtnn~w~~L~~l~~~ 307 (469)
T PLN02474 236 LIQN-KNEYCMEVTPKT---LADV-KGGTLISYEGKVQLLEIAQVPDEHVNEFK-SIEKFKIFNTNNLWVNLKAIKRL 307 (469)
T ss_pred HHhc-CCceEEEEeecC---CCCC-CccEEEEECCEEEEEEEecCCHHHHHhhc-ccccceeeeeeeEEEEHHHHHHH
Confidence 3332 344454333210 1122 234444445664 444442211110000 11134578999999999998775
No 106
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=96.97 E-value=0.00098 Score=58.15 Aligned_cols=105 Identities=27% Similarity=0.391 Sum_probs=55.6
Q ss_pred EEEEecCC---CCccccc---cccccccccchHHHHHHHHhccCCCCeEEEecCchHHHHHHH-HcCCeEEecCCcCCCc
Q 023786 51 VGIIPARF---ASSRFEG---KPLVNILGKPMIQRTWERSKLATTLDHLVVATDDEKIAECCQ-QFGADVIMTSESCRNG 123 (277)
Q Consensus 51 ~aIIlAaG---~ssRl~~---K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~-~~g~~vi~~~~~~~~g 123 (277)
.+|||... .-||+.+ -.-..=-=..|+.+++.++.. ++ |+|++.++.+.+.+. .+|+.++..+ ..|
T Consensus 2 ~~VIPvK~~~~aKSRLs~~L~~~eR~~La~aMl~Dvl~al~~---v~-v~vVs~d~~v~~~a~~~~g~~vl~d~---~~g 74 (217)
T PF01983_consen 2 RAVIPVKPLARAKSRLSPVLSPEEREALALAMLRDVLAALRA---VD-VVVVSRDPEVAALARARLGAEVLPDP---GRG 74 (217)
T ss_dssp EEEEE---TT-TTGGGTTTS-HHHHHHHHHHHHHHHHHHHHH----S-EEEEES--S-TTTTT---SSEEEE------S-
T ss_pred eEEEEcCCCCccccccCccCCHHHHHHHHHHHHHHHHHHHHh---cC-eEEeccchhhhhhhhhccCCeEecCC---CCC
Confidence 47888643 3378851 000000114689999999976 66 888888877766655 6788887643 234
Q ss_pred H-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 124 T-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 124 ~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
. ..+..|+... ..+.++++++|.|++++++++.++....
T Consensus 75 LN~Al~~a~~~~--~~~~vlvl~aDLPll~~~dl~~~l~~~~ 114 (217)
T PF01983_consen 75 LNAALNAALAAA--GDDPVLVLPADLPLLTPEDLDALLAAAG 114 (217)
T ss_dssp HHHHHHHHHH-H----S-EEEE-S--TT--HHHHHHHCT-SS
T ss_pred HHHHHHHHHhcc--CCCceEEeecCCccCCHHHHHHHHhccC
Confidence 4 3455553322 4577999999999999999999987643
No 107
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=96.73 E-value=0.043 Score=52.58 Aligned_cols=181 Identities=17% Similarity=0.129 Sum_probs=97.7
Q ss_pred ceEEEEecCCCCcccc---ccccccc-cccchHHHHHHHHhcc---CCCC-eEEEecC---chHHHHHHHHcC---CeEE
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNI-LGKPMIQRTWERSKLA---TTLD-HLVVATD---DEKIAECCQQFG---ADVI 114 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i-~GkpLi~~~i~~l~~~---~~i~-~IvVvt~---~~~i~~~~~~~g---~~vi 114 (277)
++.+|+||||.||||| ||-+.++ .|+++++..++++.+. -+++ ..++.|+ ++++.+++++|. .++.
T Consensus 56 kvavl~LaGGlGTrlG~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~ 135 (420)
T PF01704_consen 56 KVAVLKLAGGLGTRLGCSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVF 135 (420)
T ss_dssp CEEEEEEEESBSGCCTESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEE
T ss_pred CEEEEEEcCcccCccCCCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceE
Confidence 6889999999999997 8999999 6788999888887641 0222 4566664 467777776542 1211
Q ss_pred ----------ec--------CC-c-------CCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHHHHHHHHH
Q 023786 115 ----------MT--------SE-S-------CRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (277)
Q Consensus 115 ----------~~--------~~-~-------~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~~i~~li~ 161 (277)
.. +. . .+.|.+.++.+|.. + ....+++.+.+.|. +...-+. .++.
T Consensus 136 ~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDN-L~a~~Dp-~~lG 213 (420)
T PF01704_consen 136 FFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDN-LGAVVDP-VFLG 213 (420)
T ss_dssp EEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTB-TT-TT-H-HHHH
T ss_pred EEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCC-cccccCH-HHHH
Confidence 00 00 0 13355556655543 2 23468999999999 7644333 2334
Q ss_pred HHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEE--eeecCCcCCC--CCCCCCCCCCceEEEEEEeecHHHHhh
Q 023786 162 ALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAI--YFSRGLIPYN--KSGKVNPQFPYLLHLGIQSYDSNFLKI 237 (277)
Q Consensus 162 ~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~--~f~~~~~~~~--~~~~~~~~~~~~~~~Giy~~~~~~l~~ 237 (277)
.+.++ ++.+++-+++- +..-..++++...+|+.. .+++ +|.. .+. .........|+|-..++-++|+.
T Consensus 214 ~~~~~-~~~~~~evv~K----t~~dek~Gvl~~~~G~~~vvEysq--ip~~~~~~~-~~~~~~~~FntnNi~~~l~~l~~ 285 (420)
T PF01704_consen 214 YMIEK-NADFGMEVVPK----TSPDEKGGVLCRYDGKLQVVEYSQ--IPKEHMAEF-KDIKGFLLFNTNNIWFSLDFLKR 285 (420)
T ss_dssp HHHHT-T-SEEEEEEE-----CSTTTSSEEEEEETTEEEEEEGGG--S-HHGHHHH-TSTTTSBEEEEEEEEEEHHHHHH
T ss_pred HHHhc-cchhheeeeec----CCCCCceeEEEEeCCccEEEEecc--CCHHHHHhh-hccccceEEEeceeeEEHHHHHH
Confidence 44332 33344444431 111223455444566643 3443 2221 000 01112356688877888888876
Q ss_pred cc
Q 023786 238 YP 239 (277)
Q Consensus 238 ~~ 239 (277)
..
T Consensus 286 ~~ 287 (420)
T PF01704_consen 286 LL 287 (420)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 108
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.71 E-value=0.02 Score=57.28 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=79.3
Q ss_pred ceEEEEecCCCCcccc---ccccccc---cccchHHHHHHHHhcc----------CCC-CeEEEecC---chHHHHHHHH
Q 023786 49 RVVGIIPARFASSRFE---GKPLVNI---LGKPMIQRTWERSKLA----------TTL-DHLVVATD---DEKIAECCQQ 108 (277)
Q Consensus 49 ~i~aIIlAaG~ssRl~---~K~l~~i---~GkpLi~~~i~~l~~~----------~~i-~~IvVvt~---~~~i~~~~~~ 108 (277)
++.+|+||||.||||+ +|-++++ .|+++++..+++++.. ..+ -..+|.|. +++..+++++
T Consensus 128 kvavllLaGGlGTRLG~~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~~~~~~ 207 (615)
T PLN02830 128 NAAFVLVAGGLGERLGYSGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTLKLLER 207 (615)
T ss_pred cEEEEEecCCcccccCCCCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHHHHHHH
Confidence 6889999999999997 7999886 5899999999987643 011 14566665 3666777765
Q ss_pred cCC------eE--Ee--------cC----------C----cCCCcHHHHHHHHHHc-------ccCCCEEEEEcCCcccC
Q 023786 109 FGA------DV--IM--------TS----------E----SCRNGTERCNEALQKL-------EKKYDIVVNIQGDEPLI 151 (277)
Q Consensus 109 ~g~------~v--i~--------~~----------~----~~~~g~~~i~~al~~~-------~~~~d~vlv~~gD~P~i 151 (277)
++. .+ +. .. . ..+.|.+.++.+|..- ....+++++.+.|.|+.
T Consensus 208 n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~vDN~L~ 287 (615)
T PLN02830 208 NDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQDTNGLV 287 (615)
T ss_pred CCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEeccchhh
Confidence 321 11 11 00 0 1334555566666432 12468999999999988
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEEeee
Q 023786 152 EPEIIDGVVKALQAAPDAVFSTAVTS 177 (277)
Q Consensus 152 ~~~~i~~li~~~~~~~~~~v~~~~~~ 177 (277)
...+ -.++..+... ++.+.+.+++
T Consensus 288 ~~Ad-p~flG~~~~~-~~d~~~kvv~ 311 (615)
T PLN02830 288 FKAI-PAALGVSATK-GFDMNSLAVP 311 (615)
T ss_pred hccc-HHHhHHHHhc-CCceEEEEEE
Confidence 6655 3445544432 3445544443
No 109
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=96.65 E-value=0.037 Score=42.82 Aligned_cols=91 Identities=20% Similarity=0.332 Sum_probs=55.3
Q ss_pred cchHHHHHHHHhccC-CCCeEEEecCc--hHHHHHHHHcC-----CeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEEE
Q 023786 74 KPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFG-----ADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 74 kpLi~~~i~~l~~~~-~i~~IvVvt~~--~~i~~~~~~~g-----~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~ 144 (277)
.+++.++++++.+.. ...+++|+.+. ++..+...... ...... ....|. ..+..+++.. +.|+++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~--~~d~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKKDPRVIRVIN--EENQGLAAARNAGLKAA--RGEYILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhcCCCeEEEEe--cCCCChHHHHHHHHHHh--cCCEEEEE
Confidence 689999999998763 25678887752 34444443321 222222 222333 3456677766 47999999
Q ss_pred cCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 145 QGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
++|..+ .++.+..++..+..+.+.
T Consensus 85 d~D~~~-~~~~~~~~~~~~~~~~~~ 108 (156)
T cd00761 85 DADDLL-LPDWLERLVAELLADPEA 108 (156)
T ss_pred CCCCcc-CccHHHHHHHHHhcCCCc
Confidence 999955 566777775554443343
No 110
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=96.61 E-value=0.039 Score=57.27 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=62.7
Q ss_pred hHHHHHHHHhccCC-CC--eEEEecC--chHHHHHHHHcCCeEEecCCcCCCc-HHHHHHHHHHcccCCCEEEEEcCCcc
Q 023786 76 MIQRTWERSKLATT-LD--HLVVATD--DEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEP 149 (277)
Q Consensus 76 Li~~~i~~l~~~~~-i~--~IvVvt~--~~~i~~~~~~~g~~vi~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~~gD~P 149 (277)
+++.++.++.+..- -+ +|+|+-| .++..+++++.+++++.+++.. ++ .+.+.+|++.. +.|+++++|+|.
T Consensus 275 vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~~v~yI~R~~n~-~gKAGnLN~aL~~a--~GEyIavlDAD~- 350 (852)
T PRK11498 275 VVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEVGVKYIARPTHE-HAKAGNINNALKYA--KGEFVAIFDCDH- 350 (852)
T ss_pred HHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHCCcEEEEeCCCC-cchHHHHHHHHHhC--CCCEEEEECCCC-
Confidence 56677777654321 12 5777765 4777888888898887665432 33 34577888877 469999999999
Q ss_pred cCCHHHHHHHHHHHHcCCC
Q 023786 150 LIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 150 ~i~~~~i~~li~~~~~~~~ 168 (277)
..+++.+++++..+.++++
T Consensus 351 ip~pdfL~~~V~~f~~dP~ 369 (852)
T PRK11498 351 VPTRSFLQMTMGWFLKDKK 369 (852)
T ss_pred CCChHHHHHHHHHHHhCCC
Confidence 6688889999987765444
No 111
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.58 E-value=0.058 Score=45.07 Aligned_cols=93 Identities=18% Similarity=0.307 Sum_probs=59.2
Q ss_pred hHHHHHHHHhccCC-CCeEEEecC---chHHHHH----HHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCC
Q 023786 76 MIQRTWERSKLATT-LDHLVVATD---DEKIAEC----CQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGD 147 (277)
Q Consensus 76 Li~~~i~~l~~~~~-i~~IvVvt~---~~~i~~~----~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD 147 (277)
.|+.+++.+.+... -.+|+|+-+ ++...++ .++++++++..++. .|.......|++.. ..|+++++|+|
T Consensus 14 ~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a--~gd~i~~lD~D 90 (201)
T cd04195 14 FLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLPLKVVPLEKN-RGLGKALNEGLKHC--TYDWVARMDTD 90 (201)
T ss_pred HHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCCeEEEEcCcc-ccHHHHHHHHHHhc--CCCEEEEeCCc
Confidence 78899998876432 246666643 2333333 33445555544322 23334466777766 46899999999
Q ss_pred cccCCHHHHHHHHHHHHcCCCcEEE
Q 023786 148 EPLIEPEIIDGVVKALQAAPDAVFS 172 (277)
Q Consensus 148 ~P~i~~~~i~~li~~~~~~~~~~v~ 172 (277)
. ...++.++.+++.+.++++..+.
T Consensus 91 d-~~~~~~l~~~~~~~~~~~~~~~~ 114 (201)
T cd04195 91 D-ISLPDRFEKQLDFIEKNPEIDIV 114 (201)
T ss_pred c-ccCcHHHHHHHHHHHhCCCeEEE
Confidence 9 77899999999988765454443
No 112
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.50 E-value=0.074 Score=46.13 Aligned_cols=89 Identities=26% Similarity=0.381 Sum_probs=62.8
Q ss_pred cccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHcCCeEEecCCcCCCcHH-HHHHHHHHcccCCCEEEEEcCCc
Q 023786 72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLEKKYDIVVNIQGDE 148 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~g~~vi~~~~~~~~g~~-~i~~al~~~~~~~d~vlv~~gD~ 148 (277)
+....|+.+|+.+... .++|+|+-+ .+...++++.++++++.. . ..|.+ ....|++.. ..|+++++|+|.
T Consensus 10 Ne~~~l~~~l~sl~~~--~~eiivvD~gStD~t~~i~~~~~~~v~~~--~-~~g~~~~~n~~~~~a--~~d~vl~lDaD~ 82 (229)
T cd02511 10 NEERNIERCLESVKWA--VDEIIVVDSGSTDRTVEIAKEYGAKVYQR--W-WDGFGAQRNFALELA--TNDWVLSLDADE 82 (229)
T ss_pred CcHHHHHHHHHHHhcc--cCEEEEEeCCCCccHHHHHHHcCCEEEEC--C-CCChHHHHHHHHHhC--CCCEEEEEeCCc
Confidence 3445778888888653 478888765 245567777888888765 2 23433 345577766 468999999999
Q ss_pred ccCCHHHHHHHHHHHHcCCC
Q 023786 149 PLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 149 P~i~~~~i~~li~~~~~~~~ 168 (277)
.++++.++.+.+.+.+.+.
T Consensus 83 -~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 83 -RLTPELADEILALLATDDY 101 (229)
T ss_pred -CcCHHHHHHHHHHHhCCCC
Confidence 7789999999988776533
No 113
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=96.42 E-value=0.065 Score=45.78 Aligned_cols=90 Identities=14% Similarity=0.276 Sum_probs=59.7
Q ss_pred chHHHHHHHHhccCCCC---eEEEecC--chHHHHHHHHcCC----eEEecCCcCCCc-HHHHHHHHHHcccCCCEEEEE
Q 023786 75 PMIQRTWERSKLATTLD---HLVVATD--DEKIAECCQQFGA----DVIMTSESCRNG-TERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 75 pLi~~~i~~l~~~~~i~---~IvVvt~--~~~i~~~~~~~g~----~vi~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~ 144 (277)
.+++.+++.+.+...-+ +|+|+-+ .+...++++.++. .++..+.. .++ ...+..|++.. +.|+++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~a--~~d~i~~l 91 (234)
T cd06421 15 EIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEYGYRYLTRPDN-RHAKAGNLNNALAHT--TGDFVAIL 91 (234)
T ss_pred HHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhcccCceEEEeCCC-CCCcHHHHHHHHHhC--CCCEEEEE
Confidence 36788888887653333 6777765 3455555555443 44443322 233 33466788776 57999999
Q ss_pred cCCcccCCHHHHHHHHHHHHcCCC
Q 023786 145 QGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
|+|. .++++.++.+++.+.++++
T Consensus 92 D~D~-~~~~~~l~~l~~~~~~~~~ 114 (234)
T cd06421 92 DADH-VPTPDFLRRTLGYFLDDPK 114 (234)
T ss_pred cccc-CcCccHHHHHHHHHhcCCC
Confidence 9998 7789999999998876444
No 114
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=96.38 E-value=0.11 Score=43.14 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=62.6
Q ss_pred cccchHHHHHHHHhccCC---CCeEEEecC--chHHHHHHHHcCCeEEecCCcCCCcHH-HHHHHHHHcc---cCCCEEE
Q 023786 72 LGKPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTE-RCNEALQKLE---KKYDIVV 142 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~---i~~IvVvt~--~~~i~~~~~~~g~~vi~~~~~~~~g~~-~i~~al~~~~---~~~d~vl 142 (277)
+....|..+++++.+... .-+|+|+.+ .+...+.++.++..++........|.. .+..+++... .+.|+++
T Consensus 7 ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~ 86 (183)
T cd06438 7 NEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAAGATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVV 86 (183)
T ss_pred chHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEE
Confidence 334577788888765421 236777664 355566677777766544333333443 3556665542 2478999
Q ss_pred EEcCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 143 NIQGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 143 v~~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
++|+|. .++++.+..++..+.++.+.
T Consensus 87 ~~DaD~-~~~p~~l~~l~~~~~~~~~~ 112 (183)
T cd06438 87 VFDADN-LVDPNALEELNARFAAGARV 112 (183)
T ss_pred EEcCCC-CCChhHHHHHHHHHhhCCCe
Confidence 999999 67899999999988765443
No 115
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.16 E-value=0.25 Score=40.59 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=55.6
Q ss_pred cccchHHHHHHHHhccCCC-CeEEEecC--chHHHHHHHHcCC--eEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcC
Q 023786 72 LGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~i-~~IvVvt~--~~~i~~~~~~~g~--~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~g 146 (277)
+....|+.+++.+.+...- -+|+|+-+ .+...+.++++.. ..+.. ....|-......|++.. +.|+++++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~~~~~~~~-~~~~g~~~a~n~~~~~a--~~~~v~~ld~ 84 (202)
T cd06433 8 NQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYEDKITYWIS-EPDKGIYDAMNKGIALA--TGDIIGFLNS 84 (202)
T ss_pred chHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHhhcEEEEe-cCCcCHHHHHHHHHHHc--CCCEEEEeCC
Confidence 4456788888888654211 25666643 2344455544332 22332 22223334466778776 4689999999
Q ss_pred CcccCCHHHHHHHHHHHHcCCCc
Q 023786 147 DEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 147 D~P~i~~~~i~~li~~~~~~~~~ 169 (277)
|. .+.++.+..++..+....+.
T Consensus 85 D~-~~~~~~~~~~~~~~~~~~~~ 106 (202)
T cd06433 85 DD-TLLPGALLAVVAAFAEHPEV 106 (202)
T ss_pred Cc-ccCchHHHHHHHHHHhCCCc
Confidence 99 66678888888555443333
No 116
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=95.99 E-value=0.24 Score=43.01 Aligned_cols=101 Identities=21% Similarity=0.273 Sum_probs=61.4
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCC---CeEEEecC--chHHHHHHHHcC---CeEEecCC
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL---DHLVVATD--DEKIAECCQQFG---ADVIMTSE 118 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i---~~IvVvt~--~~~i~~~~~~~g---~~vi~~~~ 118 (277)
++++.+||++-+... .|..+++.+.+...- -+|+|+.+ ++...+.++++. +.++..+
T Consensus 28 ~~~isVvip~~n~~~--------------~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~i~~~- 92 (251)
T cd06439 28 LPTVTIIIPAYNEEA--------------VIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKLLRFP- 92 (251)
T ss_pred CCEEEEEEecCCcHH--------------HHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEEEEcC-
Confidence 456777777766543 344555554432111 26777665 234445554443 4455442
Q ss_pred cCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 119 ~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
...|.......|++.. ..|+++++|+|. ..+++.++++++.+.+
T Consensus 93 ~~~g~~~a~n~gi~~a--~~d~i~~lD~D~-~~~~~~l~~l~~~~~~ 136 (251)
T cd06439 93 ERRGKAAALNRALALA--TGEIVVFTDANA-LLDPDALRLLVRHFAD 136 (251)
T ss_pred CCCChHHHHHHHHHHc--CCCEEEEEcccc-CcCHHHHHHHHHHhcC
Confidence 2223334566777776 359999999999 5579999999998864
No 117
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=95.85 E-value=0.053 Score=43.01 Aligned_cols=91 Identities=16% Similarity=0.276 Sum_probs=58.8
Q ss_pred cccchHHHHHHHHhcc-CCCCeEEEecCc--hHHHHHHHHc-----CCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEE
Q 023786 72 LGKPMIQRTWERSKLA-TTLDHLVVATDD--EKIAECCQQF-----GADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~-~~i~~IvVvt~~--~~i~~~~~~~-----g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv 143 (277)
+....|..+++.+.+. ....+|+|+-+. ++..++++++ +++++..++.. |.......|++... .+++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~~~n~~~~~a~--~~~i~~ 84 (169)
T PF00535_consen 8 NEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFSAARNRGIKHAK--GEYILF 84 (169)
T ss_dssp S-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHHHHHHHHHHH----SSEEEE
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-cccccccccccccc--eeEEEE
Confidence 3446788888887765 234577777652 3445555443 45666654332 32345677888874 579999
Q ss_pred EcCCcccCCHHHHHHHHHHHHcC
Q 023786 144 IQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+|.|. .+.+..++.+++.+.+.
T Consensus 85 ld~D~-~~~~~~l~~l~~~~~~~ 106 (169)
T PF00535_consen 85 LDDDD-IISPDWLEELVEALEKN 106 (169)
T ss_dssp EETTE-EE-TTHHHHHHHHHHHC
T ss_pred eCCCc-eEcHHHHHHHHHHHHhC
Confidence 99999 66777999999999874
No 118
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=95.79 E-value=1.1 Score=39.75 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=57.3
Q ss_pred chHHHHHHHHhccCCCCeEEEecCc----hHHHHHHHHc-CCeEEecCCcCCCcHHHHHHHHHHcc-cCCCEEEEEcCCc
Q 023786 75 PMIQRTWERSKLATTLDHLVVATDD----EKIAECCQQF-GADVIMTSESCRNGTERCNEALQKLE-KKYDIVVNIQGDE 148 (277)
Q Consensus 75 pLi~~~i~~l~~~~~i~~IvVvt~~----~~i~~~~~~~-g~~vi~~~~~~~~g~~~i~~al~~~~-~~~d~vlv~~gD~ 148 (277)
..|..+++.+.+. ..+|+|+=+. +.+.+..+.. .+.++..++. .|...+...|++.+. .+.|+++++|.|.
T Consensus 8 ~~l~~~l~sl~~q--~~~iiVVDN~S~~~~~~~~~~~~~~~i~~i~~~~N-~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~ 84 (281)
T TIGR01556 8 EHLGELITSLPKQ--VDRIIAVDNSPHSDQPLKNARLRGQKIALIHLGDN-QGIAGAQNQGLDASFRRGVQGVLLLDQDS 84 (281)
T ss_pred HHHHHHHHHHHhc--CCEEEEEECcCCCcHhHHHHhccCCCeEEEECCCC-cchHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4778888888764 4677777653 2344444432 3555554322 244445666666542 2579999999999
Q ss_pred ccCCHHHHHHHHHHHHcC
Q 023786 149 PLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 149 P~i~~~~i~~li~~~~~~ 166 (277)
..+++.++.+++.+.+.
T Consensus 85 -~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 85 -RPGNAFLAAQWKLLSAE 101 (281)
T ss_pred -CCCHHHHHHHHHHHHhc
Confidence 66788999999887653
No 119
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=95.77 E-value=0.95 Score=41.14 Aligned_cols=192 Identities=15% Similarity=0.095 Sum_probs=96.5
Q ss_pred cccccchHHHHHHHHhccCCCCeEEEecC---chHHHHHHHHc---CCeEEecCCcCCCcHHHHHHHHHHcccC-CCEEE
Q 023786 70 NILGKPMIQRTWERSKLATTLDHLVVATD---DEKIAECCQQF---GADVIMTSESCRNGTERCNEALQKLEKK-YDIVV 142 (277)
Q Consensus 70 ~i~GkpLi~~~i~~l~~~~~i~~IvVvt~---~~~i~~~~~~~---g~~vi~~~~~~~~g~~~i~~al~~~~~~-~d~vl 142 (277)
..+....+...++.+.+....+..+|+++ .+...+..+.. .+.++...+. .|+.+....+++....+ .++++
T Consensus 11 ~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~~~~v~~i~~~~N-lG~agg~n~g~~~a~~~~~~~~l 89 (305)
T COG1216 11 TYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARFFPNVRLIENGEN-LGFAGGFNRGIKYALAKGDDYVL 89 (305)
T ss_pred ecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhcCCcEEEEEcCCC-ccchhhhhHHHHHHhcCCCcEEE
Confidence 45566677778887776644444444333 23333444432 4555655443 24444444455444212 33899
Q ss_pred EEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEE-E--ECCCceEEeeecCCcCCCCCCCCCCCC
Q 023786 143 NIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKC-V--VDNHGYAIYFSRGLIPYNKSGKVNPQF 219 (277)
Q Consensus 143 v~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v-~--~~~~g~~~~f~~~~~~~~~~~~~~~~~ 219 (277)
+++-|. .+++..++++++.+.+.+...++........ +..-++...- . .........+.+.. . +....+..
T Consensus 90 ~LN~D~-~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~ 163 (305)
T COG1216 90 LLNPDT-VVEPDLLEELLKAAEEDPAAGVVGPLIRNYD-ESLYIDRRGGESDGLTGGWRASPLLEIA---P-DLSSYLEV 163 (305)
T ss_pred EEcCCe-eeChhHHHHHHHHHHhCCCCeEeeeeEecCC-CCcchheeccccccccccceeccccccc---c-cccchhhh
Confidence 999996 6789999999999987544433322221100 0000010000 0 00000010000000 0 00000000
Q ss_pred CceEEEEEEeecHHHHhhccCCCCCCCccccChH-HHHHHHcCCeeEEEE
Q 023786 220 PYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE-QLKVLENGYKMKVQQ 268 (277)
Q Consensus 220 ~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~-~l~~le~g~~v~~~~ 268 (277)
....+.+....+++.++......+.-+...|+.+ .+|+...|+++..+.
T Consensus 164 ~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p 213 (305)
T COG1216 164 VASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVP 213 (305)
T ss_pred hhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEee
Confidence 0124556678899999988765555454445555 467889999887665
No 120
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=95.63 E-value=0.21 Score=51.15 Aligned_cols=90 Identities=17% Similarity=0.305 Sum_probs=61.2
Q ss_pred hHHHHHHHHhccCCC-C--eEEEecCc--------------------hHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHH
Q 023786 76 MIQRTWERSKLATTL-D--HLVVATDD--------------------EKIAECCQQFGADVIMTSESCRNGTERCNEALQ 132 (277)
Q Consensus 76 Li~~~i~~l~~~~~i-~--~IvVvt~~--------------------~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~ 132 (277)
+++.+++++.+..-- + +|+|+-|. +++.++++++++.++.+++...+-...+.+|++
T Consensus 146 iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v~yi~r~~n~~~KAgnLN~al~ 225 (713)
T TIGR03030 146 IVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGVNYITRPRNVHAKAGNINNALK 225 (713)
T ss_pred HHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCcEEEECCCCCCCChHHHHHHHH
Confidence 567777777653211 2 67776542 245566677888887665443222345788888
Q ss_pred HcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 133 KLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 133 ~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
.. +.|+++++|+|. ..+++.+++++..+.++++
T Consensus 226 ~a--~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~ 258 (713)
T TIGR03030 226 HT--DGELILIFDADH-VPTRDFLQRTVGWFVEDPK 258 (713)
T ss_pred hc--CCCEEEEECCCC-CcChhHHHHHHHHHHhCCC
Confidence 77 469999999999 6689999999998865444
No 121
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=95.59 E-value=0.36 Score=44.62 Aligned_cols=110 Identities=15% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecC--chHHH----HHHHHcCCeEEe-cCC
Q 023786 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATD--DEKIA----ECCQQFGADVIM-TSE 118 (277)
Q Consensus 46 ~~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~----~~~~~~g~~vi~-~~~ 118 (277)
+++++..|||+--...+++ .+++.+.+.+.+...--+|+|+-+ .+.-. +..++.+.++.. ..+
T Consensus 4 ~~~~vSVVIP~yNE~~~i~----------~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~ 73 (325)
T PRK10714 4 PIKKVSVVIPVYNEQESLP----------ELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLN 73 (325)
T ss_pred CCCeEEEEEcccCchhhHH----------HHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeC
Confidence 3456778888765554431 344444444443322236777654 12222 223333444432 111
Q ss_pred cCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 119 SCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 119 ~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
.-.|-...+..|+++. +.|+++++|+|. -.+++.+.++++.+.++.|
T Consensus 74 ~n~G~~~A~~~G~~~A--~gd~vv~~DaD~-q~~p~~i~~l~~~~~~~~D 120 (325)
T PRK10714 74 RNYGQHSAIMAGFSHV--TGDLIITLDADL-QNPPEEIPRLVAKADEGYD 120 (325)
T ss_pred CCCCHHHHHHHHHHhC--CCCEEEEECCCC-CCCHHHHHHHHHHHHhhCC
Confidence 2123234567788777 469999999999 5689999999998865545
No 122
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=95.50 E-value=0.55 Score=44.36 Aligned_cols=193 Identities=19% Similarity=0.231 Sum_probs=102.0
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCC-CeEEEecC--chHHHHHHHHcC------CeEEecCC
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTL-DHLVVATD--DEKIAECCQQFG------ADVIMTSE 118 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i-~~IvVvt~--~~~i~~~~~~~g------~~vi~~~~ 118 (277)
.++..+||+-+...+ .++.+++++.+..-- -+|+|+.+ .++..+.+++.+ +++. .++
T Consensus 54 p~vsviiP~ynE~~~-------------~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~-~~~ 119 (439)
T COG1215 54 PKVSVIIPAYNEEPE-------------VLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVI-YPE 119 (439)
T ss_pred CceEEEEecCCCchh-------------hHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEE-ecc
Confidence 456667766655422 889999998876322 27777776 355555554432 2333 111
Q ss_pred cCCCc-HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCc-eEEEECCC
Q 023786 119 SCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNR-VKCVVDNH 196 (277)
Q Consensus 119 ~~~~g-~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~-~~v~~~~~ 196 (277)
...+| ...+..|++.. +.|.++++|+|. ...++.+.+++..+..... . ++...+.... ..++.. ....+.-.
T Consensus 120 ~~~~gK~~al~~~l~~~--~~d~V~~~DaD~-~~~~d~l~~~~~~f~~~~~-~-~v~~~~~~~~-~~~~~~~l~~~~~~~ 193 (439)
T COG1215 120 KKNGGKAGALNNGLKRA--KGDVVVILDADT-VPEPDALRELVSPFEDPPV-G-AVVGTPRIRN-RPDPSNLLGRIQAIE 193 (439)
T ss_pred ccCccchHHHHHHHhhc--CCCEEEEEcCCC-CCChhHHHHHHhhhcCCCe-e-EEeCCceeee-cCChhhhcchhcchh
Confidence 12234 34567788776 479999999999 6788999999998876422 2 2211110000 000000 00000000
Q ss_pred ceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCC-ccccChHHHHHHHcCCeeEEEE
Q 023786 197 GYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPL-QLEEDLEQLKVLENGYKMKVQQ 268 (277)
Q Consensus 197 g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~-~~~d~l~~l~~le~g~~v~~~~ 268 (277)
.....+.... ... ..............|+++.|+......+..+ ||.+ --+++...|+++..+.
T Consensus 194 ~~~~~~~~~~--~~~----~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~--lt~~l~~~G~~~~~~~ 258 (439)
T COG1215 194 YLSAFYFRLR--AAS----KGGLISFLSGSSSAFRRSALEEVGGWLEDTITEDAD--LTLRLHLRGYRVVYVP 258 (439)
T ss_pred hhhhHHHhhh--hhh----hcCCeEEEcceeeeEEHHHHHHhCCCCCCceeccHH--HHHHHHHCCCeEEEee
Confidence 0000000000 000 0112456777889999999998864333333 3322 2355668888876665
No 123
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=95.34 E-value=2 Score=38.60 Aligned_cols=90 Identities=11% Similarity=0.149 Sum_probs=56.6
Q ss_pred chHHHHHHHHhccCC---CCeEEEecCc--hHHHHHH-----HHc--CCeEEecCCcCCCcH-HHHHHHHHHcccCCCEE
Q 023786 75 PMIQRTWERSKLATT---LDHLVVATDD--EKIAECC-----QQF--GADVIMTSESCRNGT-ERCNEALQKLEKKYDIV 141 (277)
Q Consensus 75 pLi~~~i~~l~~~~~---i~~IvVvt~~--~~i~~~~-----~~~--g~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~v 141 (277)
..|..+++.+.+... ..+||||-+. +...+.+ ... .++++..+. ..|. .....|++.. ..|++
T Consensus 12 ~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~--n~G~~~a~N~g~~~A--~gd~i 87 (299)
T cd02510 12 STLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKK--REGLIRARIAGARAA--TGDVL 87 (299)
T ss_pred HHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCC--CCCHHHHHHHHHHHc--cCCEE
Confidence 578888888865321 1378887652 2222222 122 355554432 2343 3455677766 46999
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
+++|+|. .+++..++.+++.+.+++..
T Consensus 88 ~fLD~D~-~~~~~wL~~ll~~l~~~~~~ 114 (299)
T cd02510 88 VFLDSHC-EVNVGWLEPLLARIAENRKT 114 (299)
T ss_pred EEEeCCc-ccCccHHHHHHHHHHhCCCe
Confidence 9999999 56899999999988765443
No 124
>PRK11204 N-glycosyltransferase; Provisional
Probab=95.08 E-value=0.88 Score=43.09 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=55.9
Q ss_pred chHHHHHHHHhccCC-CCeEEEecC--chHHHHH----HHHcC-CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcC
Q 023786 75 PMIQRTWERSKLATT-LDHLVVATD--DEKIAEC----CQQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (277)
Q Consensus 75 pLi~~~i~~l~~~~~-i~~IvVvt~--~~~i~~~----~~~~g-~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~g 146 (277)
..+..+++.+.+... -.+|+|+.+ .++..+. ..++. ++++..++. .|-...+..|++.. +.|+++++|+
T Consensus 67 ~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~n-~Gka~aln~g~~~a--~~d~i~~lDa 143 (420)
T PRK11204 67 ENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLAEN-QGKANALNTGAAAA--RSEYLVCIDG 143 (420)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcCCC-CCHHHHHHHHHHHc--CCCEEEEECC
Confidence 456777777765421 236777664 2333333 33332 444443222 23334566777766 5799999999
Q ss_pred CcccCCHHHHHHHHHHHHcCCC
Q 023786 147 DEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 147 D~P~i~~~~i~~li~~~~~~~~ 168 (277)
|. ..+++.++++++.+.++++
T Consensus 144 D~-~~~~d~L~~l~~~~~~~~~ 164 (420)
T PRK11204 144 DA-LLDPDAAAYMVEHFLHNPR 164 (420)
T ss_pred CC-CCChhHHHHHHHHHHhCCC
Confidence 99 6789999999999865444
No 125
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.05 E-value=1 Score=42.49 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=61.3
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccC--CCCeEEEecCc--hHHHHHH----HHc----CCeEE
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT--TLDHLVVATDD--EKIAECC----QQF----GADVI 114 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~--~i~~IvVvt~~--~~i~~~~----~~~----g~~vi 114 (277)
.+++.+||||.... ..|..+++.+.+.. ..-+|+|+-+. +...+.+ +++ .++++
T Consensus 39 ~p~VSVIIpa~Ne~--------------~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi 104 (384)
T TIGR03469 39 WPAVVAVVPARNEA--------------DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVV 104 (384)
T ss_pred CCCEEEEEecCCcH--------------hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEe
Confidence 34577888877554 45566777765431 12377777652 3333333 222 23444
Q ss_pred ecCCcCC--CcH-HHHHHHHHHcc---cCCCEEEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 115 MTSESCR--NGT-ERCNEALQKLE---KKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 115 ~~~~~~~--~g~-~~i~~al~~~~---~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
..++... .|. ..+..|++... .+.|+++++|+|. ..+++.++++++.+.+.
T Consensus 105 ~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~ 161 (384)
T TIGR03469 105 SGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAE 161 (384)
T ss_pred cCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhC
Confidence 3221111 232 24556666553 1268999999999 67899999999888654
No 126
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=94.91 E-value=0.6 Score=40.02 Aligned_cols=88 Identities=19% Similarity=0.321 Sum_probs=57.0
Q ss_pred hHHHHHHHHhccCC-CCeEEEecCc---h----HHHHHHHHcCCeE--EecCCcCCCc-HHHHHHHHHHcccCCCEEEEE
Q 023786 76 MIQRTWERSKLATT-LDHLVVATDD---E----KIAECCQQFGADV--IMTSESCRNG-TERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 76 Li~~~i~~l~~~~~-i~~IvVvt~~---~----~i~~~~~~~g~~v--i~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~ 144 (277)
+|..+++.+.+... --+|+|+-+. + .+.+++++++.++ +.. ....|+ ...+..|++....+.|+++++
T Consensus 13 ~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~-~~~~G~~~~a~n~g~~~a~~~~d~i~~l 91 (236)
T cd06435 13 MVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHV-EPLPGAKAGALNYALERTAPDAEIIAVI 91 (236)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEc-CCCCCCchHHHHHHHHhcCCCCCEEEEE
Confidence 78888888876531 2367776642 2 2234555544333 333 222343 445667777764347999999
Q ss_pred cCCcccCCHHHHHHHHHHHHc
Q 023786 145 QGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~ 165 (277)
|+|. .++++.+..+++.+.+
T Consensus 92 D~D~-~~~~~~l~~l~~~~~~ 111 (236)
T cd06435 92 DADY-QVEPDWLKRLVPIFDD 111 (236)
T ss_pred cCCC-CcCHHHHHHHHHHhcC
Confidence 9998 8899999999988753
No 127
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=94.79 E-value=2.3 Score=36.28 Aligned_cols=87 Identities=13% Similarity=0.155 Sum_probs=54.3
Q ss_pred ccccc-chHHHHHHHHhccCCCCeEEEecCc--hHHHHHHH--HcCCeEEecCCcCCCcHHHHHHHHHHccc-CCCEEEE
Q 023786 70 NILGK-PMIQRTWERSKLATTLDHLVVATDD--EKIAECCQ--QFGADVIMTSESCRNGTERCNEALQKLEK-KYDIVVN 143 (277)
Q Consensus 70 ~i~Gk-pLi~~~i~~l~~~~~i~~IvVvt~~--~~i~~~~~--~~g~~vi~~~~~~~~g~~~i~~al~~~~~-~~d~vlv 143 (277)
..++. ..|..+++.+.+. ..+|+|+-+. +......+ ..++.++..++. .|-......|++.... +.|++++
T Consensus 5 ~yn~~~~~l~~~l~sl~~q--~~~iivvDn~s~~~~~~~~~~~~~~i~~i~~~~n-~G~~~a~N~g~~~a~~~~~d~v~~ 81 (237)
T cd02526 5 TYNPDLSKLKELLAALAEQ--VDKVVVVDNSSGNDIELRLRLNSEKIELIHLGEN-LGIAKALNIGIKAALENGADYVLL 81 (237)
T ss_pred EecCCHHHHHHHHHHHhcc--CCEEEEEeCCCCccHHHHhhccCCcEEEEECCCc-eehHHhhhHHHHHHHhCCCCEEEE
Confidence 35666 8899999998864 5677776542 22222222 234454444322 2333345567766532 4699999
Q ss_pred EcCCcccCCHHHHHHHH
Q 023786 144 IQGDEPLIEPEIIDGVV 160 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li 160 (277)
+|+|. .++++.++.++
T Consensus 82 lD~D~-~~~~~~l~~l~ 97 (237)
T cd02526 82 FDQDS-VPPPDMVEKLL 97 (237)
T ss_pred ECCCC-CcCHhHHHHHH
Confidence 99999 66899999995
No 128
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=94.78 E-value=2 Score=35.57 Aligned_cols=90 Identities=24% Similarity=0.329 Sum_probs=54.1
Q ss_pred chHHHHHHHHhccCC-CCeEEEecC---chHHHHHHHH-----cCCeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEEE
Q 023786 75 PMIQRTWERSKLATT-LDHLVVATD---DEKIAECCQQ-----FGADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 75 pLi~~~i~~l~~~~~-i~~IvVvt~---~~~i~~~~~~-----~g~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~ 144 (277)
..++.+++.+.+... -.+|+|+-+ ++...++.+. ..+.++..+ . ..|. .....|++.. ..|+++++
T Consensus 15 ~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~~~a~n~g~~~a--~~d~i~~l 90 (202)
T cd04184 15 KYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFRE-E-NGGISAATNSALELA--TGEFVALL 90 (202)
T ss_pred HHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEcc-c-CCCHHHHHHHHHHhh--cCCEEEEE
Confidence 567778887765421 126777653 2223333322 123333332 2 2343 3456677766 46999999
Q ss_pred cCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 145 QGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
|+|. .++++.++.+++.+.++.+.
T Consensus 91 d~D~-~~~~~~l~~~~~~~~~~~~~ 114 (202)
T cd04184 91 DHDD-ELAPHALYEVVKALNEHPDA 114 (202)
T ss_pred CCCC-cCChHHHHHHHHHHHhCCCC
Confidence 9999 77899999999988443343
No 129
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=94.76 E-value=0.03 Score=53.77 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=95.2
Q ss_pred CceEEEEecCCCCcccc---cccccccc-ccchHHHHHHHHhccC---CCC-eEEEecC--chHHHHHH--HHc-C----
Q 023786 48 SRVVGIIPARFASSRFE---GKPLVNIL-GKPMIQRTWERSKLAT---TLD-HLVVATD--DEKIAECC--QQF-G---- 110 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~---~K~l~~i~-GkpLi~~~i~~l~~~~---~i~-~IvVvt~--~~~i~~~~--~~~-g---- 110 (277)
-++.+|+||||.|+||+ ||-+.+|. |+++++.+.++++... .++ ..++.+. .++-..+. .+| |
T Consensus 104 ~klAvl~LaGGqGtrlG~~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y~~~~k~ 183 (472)
T COG4284 104 GKLAVLKLAGGQGTRLGCDGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDYFGLDKE 183 (472)
T ss_pred CceEEEEecCCcccccccCCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhhcCCCHH
Confidence 36789999999999997 89999997 9999999998876321 222 3344443 32322222 122 2
Q ss_pred -CeEEec---------------------CCcCCCcHHHHHHHHHH------c-ccCCCEEEEEcCCcccCCHHHHHHHHH
Q 023786 111 -ADVIMT---------------------SESCRNGTERCNEALQK------L-EKKYDIVVNIQGDEPLIEPEIIDGVVK 161 (277)
Q Consensus 111 -~~vi~~---------------------~~~~~~g~~~i~~al~~------~-~~~~d~vlv~~gD~P~i~~~~i~~li~ 161 (277)
+..+.+ ....+.|.+.+..+|.. + ...-+++.|.+.|. +-.+-++. ++.
T Consensus 184 ~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDN-L~~~vD~~-~lg 261 (472)
T COG4284 184 DIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDN-LGATVDLK-FLG 261 (472)
T ss_pred HeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccc-cccccCHH-HHH
Confidence 111110 01223344445555543 1 12457899999999 76554443 333
Q ss_pred HHHcCCCcEEEEEeee-cCCCCCCCCCceEEE--ECCCceEEeeecCCcCCCCCCCCCCC--CCceEE-EEEEeecHHHH
Q 023786 162 ALQAAPDAVFSTAVTS-LKPEDAFDPNRVKCV--VDNHGYAIYFSRGLIPYNKSGKVNPQ--FPYLLH-LGIQSYDSNFL 235 (277)
Q Consensus 162 ~~~~~~~~~v~~~~~~-~~~~~~~d~~~~~v~--~~~~g~~~~f~~~~~~~~~~~~~~~~--~~~~~~-~Giy~~~~~~l 235 (277)
.+..+ ++.+++-++. .+ .+. .++++ .+..-+++.+++-+-.+..... ... .....| .++|++.-..|
T Consensus 262 ~~~~~-~~e~~~e~t~Kt~----a~e-kvG~Lv~~~g~~rllEysev~~~~~~~~~-s~~~~~~~n~Nni~l~~~~~~~l 334 (472)
T COG4284 262 FMAET-NYEYLMETTDKTK----ADE-KVGILVTYDGKLRLLEYSEVPNEHREEFT-SDGKLKYFNTNNIWLHLFSVKFL 334 (472)
T ss_pred HHHhc-CcceeEEEeeccc----ccc-cceEEEEeCCceEEEEEecCChhHhhhhc-cccceeeeccccceeehhHHHHH
Confidence 33332 3445543332 11 122 23443 4455566777764421110000 000 112344 78888887777
Q ss_pred hhc
Q 023786 236 KIY 238 (277)
Q Consensus 236 ~~~ 238 (277)
...
T Consensus 335 ~~~ 337 (472)
T COG4284 335 KEA 337 (472)
T ss_pred Hhh
Confidence 654
No 130
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=94.74 E-value=0.68 Score=36.44 Aligned_cols=95 Identities=23% Similarity=0.332 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHhccC-CCCeEEEecC--chHHHHHHHHcCC----eE-EecCCcCCCcHHHHHHHHHHcccCCCEEEE
Q 023786 72 LGKPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFGA----DV-IMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~-~i~~IvVvt~--~~~i~~~~~~~g~----~v-i~~~~~~~~g~~~i~~al~~~~~~~d~vlv 143 (277)
+....|..+++.+.+.. ...+|+|+-+ .+...+.+..+.. .+ ....+...|-......|++.. ..+++++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~--~~~~i~~ 84 (180)
T cd06423 7 NEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHA--KGDIVVV 84 (180)
T ss_pred ChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhc--CCCEEEE
Confidence 33467888888887652 1346777654 2333333333221 12 222222223233456677776 5799999
Q ss_pred EcCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 144 IQGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
+|+|. .+.++.+..++..+.++.+.
T Consensus 85 ~D~D~-~~~~~~l~~~~~~~~~~~~~ 109 (180)
T cd06423 85 LDADT-ILEPDALKRLVVPFFADPKV 109 (180)
T ss_pred ECCCC-CcChHHHHHHHHHhccCCCe
Confidence 99999 66899999996666554343
No 131
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=94.66 E-value=1.2 Score=42.93 Aligned_cols=103 Identities=16% Similarity=0.265 Sum_probs=62.1
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccCC-CC--eEEEecC--chHHHHH----HHHc-CCeEEecC
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATT-LD--HLVVATD--DEKIAEC----CQQF-GADVIMTS 117 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~-i~--~IvVvt~--~~~i~~~----~~~~-g~~vi~~~ 117 (277)
+++..|||+-. ....|..+++.+.+..- -+ +|+|+-+ .++..+. .+.+ ++.+...+
T Consensus 49 P~vsVIIP~yN--------------e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~~~ 114 (439)
T TIGR03111 49 PDITIIIPVYN--------------SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRYMN 114 (439)
T ss_pred CCEEEEEEeCC--------------ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEEeC
Confidence 45667777653 23566777777765421 12 4666644 2333332 2232 34444332
Q ss_pred CcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 118 ESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 118 ~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
+. .|...++..|++.. +.|+++++|+|. ..+++.++++++.+.++++
T Consensus 115 ~~-~Gka~AlN~gl~~s--~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~ 161 (439)
T TIGR03111 115 SD-QGKAKALNAAIYNS--IGKYIIHIDSDG-KLHKDAIKNMVTRFENNPD 161 (439)
T ss_pred CC-CCHHHHHHHHHHHc--cCCEEEEECCCC-CcChHHHHHHHHHHHhCCC
Confidence 22 23334567788876 468999999999 6689999999999875544
No 132
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=94.62 E-value=0.12 Score=41.03 Aligned_cols=89 Identities=25% Similarity=0.263 Sum_probs=43.4
Q ss_pred HHHHHhccCCCCeEEEecCch--HHHH-HHHHcCCeEEecCCcCCCc-HHHHHHHHHHcccCCCEEEEEcCCcccCCHHH
Q 023786 80 TWERSKLATTLDHLVVATDDE--KIAE-CCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDEPLIEPEI 155 (277)
Q Consensus 80 ~i~~l~~~~~i~~IvVvt~~~--~i~~-~~~~~g~~vi~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~ 155 (277)
|++++.+....+.++..+++. .... .....++.+.... .++ ..|+.+|++.+...++.++++-+|.|.+++++
T Consensus 1 tl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~---g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~ 77 (122)
T PF09837_consen 1 TLAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQ---GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDD 77 (122)
T ss_dssp -------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE-----SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHH
T ss_pred CccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecC---CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHH
Confidence 456666654444444444432 1111 1233456665432 122 25788888777445779999999999999999
Q ss_pred HHHHHHHHHcCCCcEEE
Q 023786 156 IDGVVKALQAAPDAVFS 172 (277)
Q Consensus 156 i~~li~~~~~~~~~~v~ 172 (277)
|++..+.+.+. +.++.
T Consensus 78 l~~A~~~L~~~-d~Vlg 93 (122)
T PF09837_consen 78 LEQAFEALQRH-DVVLG 93 (122)
T ss_dssp HHHHHHHTTT--SEEEE
T ss_pred HHHHHHHhccC-CEEEe
Confidence 99999888654 54433
No 133
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.60 E-value=0.66 Score=36.78 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=58.9
Q ss_pred cccchHHHHHHHHhccC-CCCeEEEecCc--hHHHHHHHHcC--CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcC
Q 023786 72 LGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFG--ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~-~i~~IvVvt~~--~~i~~~~~~~g--~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~g 146 (277)
+....+..+++.+.+.. ...+|+|+.+. +...+.+.+.. +.++..+ ...|-......|++.. +.++++++++
T Consensus 7 ~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~~~~~~--~~~~i~~~D~ 83 (166)
T cd04186 7 NSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELFPEVRLIRNG-ENLGFGAGNNQGIREA--KGDYVLLLNP 83 (166)
T ss_pred CCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhCCCeEEEecC-CCcChHHHhhHHHhhC--CCCEEEEECC
Confidence 44568889999987652 23467776652 33344444433 4444332 2223334456677777 5799999999
Q ss_pred CcccCCHHHHHHHHHHHHcCCC
Q 023786 147 DEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 147 D~P~i~~~~i~~li~~~~~~~~ 168 (277)
|. .++++.+..+++.+.+..+
T Consensus 84 D~-~~~~~~l~~~~~~~~~~~~ 104 (166)
T cd04186 84 DT-VVEPGALLELLDAAEQDPD 104 (166)
T ss_pred Cc-EECccHHHHHHHHHHhCCC
Confidence 98 5678899999987765444
No 134
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=94.49 E-value=0.54 Score=40.16 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=54.2
Q ss_pred chHHHHHHHHhccCCCCeEEEecC--chHHHHHH---HHcC-CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCc
Q 023786 75 PMIQRTWERSKLATTLDHLVVATD--DEKIAECC---QQFG-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDE 148 (277)
Q Consensus 75 pLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~---~~~g-~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~ 148 (277)
..|..+++.+.+.. -.+|+|+.+ .+...+.+ .... +.++. ....|-...+..|++.. +.|+++++|+|.
T Consensus 14 ~~l~~~l~sl~~q~-~~eiivvdd~s~d~~~~~l~~~~~~~~~~v~~--~~~~g~~~a~n~g~~~a--~~d~v~~lD~D~ 88 (235)
T cd06434 14 DVFRECLRSILRQK-PLEIIVVTDGDDEPYLSILSQTVKYGGIFVIT--VPHPGKRRALAEGIRHV--TTDIVVLLDSDT 88 (235)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEeCCCChHHHHHHHhhccCCcEEEEe--cCCCChHHHHHHHHHHh--CCCEEEEECCCc
Confidence 67888888887653 447777765 23333332 2222 23332 22223334466677766 579999999999
Q ss_pred ccCCHHHHHHHHHHHH
Q 023786 149 PLIEPEIIDGVVKALQ 164 (277)
Q Consensus 149 P~i~~~~i~~li~~~~ 164 (277)
.++++.++++++.+.
T Consensus 89 -~~~~~~l~~l~~~~~ 103 (235)
T cd06434 89 -VWPPNALPEMLKPFE 103 (235)
T ss_pred -eeChhHHHHHHHhcc
Confidence 778889999999886
No 135
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=94.09 E-value=0.74 Score=42.18 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=66.7
Q ss_pred CCCceEEEEecCCCCccccccccccccccchHHHHHHHHhcc---CCCCeEEEecC--chHHHHHHHHcCCeEEecCC--
Q 023786 46 FRSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLA---TTLDHLVVATD--DEKIAECCQQFGADVIMTSE-- 118 (277)
Q Consensus 46 ~~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~---~~i~~IvVvt~--~~~i~~~~~~~g~~vi~~~~-- 118 (277)
.++++.+||||--.... |..+++.+.+. +...+|+|+-+ .+...+++++++.+++....
T Consensus 29 ~~~~vSVVIPayNee~~--------------I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~~~~~~ 94 (306)
T PRK13915 29 AGRTVSVVLPALNEEET--------------VGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVSREEIL 94 (306)
T ss_pred CCCCEEEEEecCCcHHH--------------HHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhcchhhh
Confidence 35678899998755432 33444444321 23458887764 34555666666655432110
Q ss_pred ---cCCCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEE
Q 023786 119 ---SCRNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (277)
Q Consensus 119 ---~~~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~ 172 (277)
....|. ..+..|+... +.|+++++|+|.-..+++.+.++++.+..+++..++
T Consensus 95 ~~~~~n~Gkg~A~~~g~~~a--~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V 150 (306)
T PRK13915 95 PELPPRPGKGEALWRSLAAT--TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLV 150 (306)
T ss_pred hccccCCCHHHHHHHHHHhc--CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEE
Confidence 112333 3466677665 469999999998446899999999887643343333
No 136
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=93.89 E-value=1.5 Score=37.02 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=54.5
Q ss_pred cccchHHHHHHHHhccC--CCCeEEEecCc--hHHHHHH----HHcC-CeEEecCCcCCCcH-HHHHHHHHHcccCCCEE
Q 023786 72 LGKPMIQRTWERSKLAT--TLDHLVVATDD--EKIAECC----QQFG-ADVIMTSESCRNGT-ERCNEALQKLEKKYDIV 141 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~--~i~~IvVvt~~--~~i~~~~----~~~g-~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~v 141 (277)
+....|..+++.+.+.. .-.+|+|+-+. +...+++ +... +.++.. +. ..|. .+...|++.. ..|++
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~~i~~~~~-~~-n~G~~~a~n~g~~~a--~gd~i 82 (224)
T cd06442 7 NERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYPRVRLIVR-PG-KRGLGSAYIEGFKAA--RGDVI 82 (224)
T ss_pred chhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCCceEEEec-CC-CCChHHHHHHHHHHc--CCCEE
Confidence 34456788888887542 12467776542 3333333 2222 233333 22 3444 4466788777 35899
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHc
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+++|+|. ..+++.++.+++.+..
T Consensus 83 ~~lD~D~-~~~~~~l~~l~~~~~~ 105 (224)
T cd06442 83 VVMDADL-SHPPEYIPELLEAQLE 105 (224)
T ss_pred EEEECCC-CCCHHHHHHHHHHHhc
Confidence 9999998 5689999999998544
No 137
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=93.73 E-value=2.4 Score=36.81 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=30.4
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
..+..|++.. ..|+++++|+|. ..+++.+..+++.+.+
T Consensus 83 ~a~n~g~~~a--~g~~i~~lD~D~-~~~~~~l~~l~~~~~~ 120 (243)
T PLN02726 83 TAYIHGLKHA--SGDFVVIMDADL-SHHPKYLPSFIKKQRE 120 (243)
T ss_pred HHHHHHHHHc--CCCEEEEEcCCC-CCCHHHHHHHHHHHHh
Confidence 3466777766 468999999999 4689999999988754
No 138
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=93.70 E-value=1.9 Score=35.13 Aligned_cols=87 Identities=22% Similarity=0.182 Sum_probs=53.5
Q ss_pred chHHHHHHHHhccC---CCCeEEEecCc--hHHHHHHHHc----C-CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEE
Q 023786 75 PMIQRTWERSKLAT---TLDHLVVATDD--EKIAECCQQF----G-ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 75 pLi~~~i~~l~~~~---~i~~IvVvt~~--~~i~~~~~~~----g-~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~ 144 (277)
..|..+++.+.+.. ...+|+|+-+. +...+.++.+ . ..++..+ .-.|-......+++... .|+++++
T Consensus 10 ~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~-~n~G~~~a~n~g~~~a~--gd~i~~l 86 (185)
T cd04179 10 ENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLS-RNFGKGAAVRAGFKAAR--GDIVVTM 86 (185)
T ss_pred hhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEcc-CCCCccHHHHHHHHHhc--CCEEEEE
Confidence 45667777776552 25677777652 3333434332 2 2233332 22343445667777763 5899999
Q ss_pred cCCcccCCHHHHHHHHHHHHc
Q 023786 145 QGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~ 165 (277)
|+|. .++++.++++++.+.+
T Consensus 87 D~D~-~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 87 DADL-QHPPEDIPKLLEKLLE 106 (185)
T ss_pred eCCC-CCCHHHHHHHHHHHhc
Confidence 9998 5689999999987544
No 139
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.70 E-value=1.3 Score=37.34 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHhccCC-C--CeEEEecCc--hHHHHHHH---H-cC--CeEEecCCcCCCcH-HHHHHHHHHcccCCCE
Q 023786 73 GKPMIQRTWERSKLATT-L--DHLVVATDD--EKIAECCQ---Q-FG--ADVIMTSESCRNGT-ERCNEALQKLEKKYDI 140 (277)
Q Consensus 73 GkpLi~~~i~~l~~~~~-i--~~IvVvt~~--~~i~~~~~---~-~g--~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~ 140 (277)
....|..+|+.+.+... - -+|+|+-+. +...+.++ . .+ +.++..+.....|. ..+..|++.. ..|+
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~--~~d~ 85 (229)
T cd04192 8 EAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAA--KGDW 85 (229)
T ss_pred cHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHh--cCCE
Confidence 34568888888765421 1 367666642 22223222 1 12 33333322112232 3355666665 4699
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHcC
Q 023786 141 VVNIQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 141 vlv~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
++++|+|. .+.++.++++++.+.+.
T Consensus 86 i~~~D~D~-~~~~~~l~~l~~~~~~~ 110 (229)
T cd04192 86 IVTTDADC-VVPSNWLLTFVAFIQKE 110 (229)
T ss_pred EEEECCCc-ccCHHHHHHHHHHhhcC
Confidence 99999999 77899999999877654
No 140
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.39 E-value=3.4 Score=38.75 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=59.1
Q ss_pred CceEEEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCc--hH----HHHHHHHcC---CeEEecC
Q 023786 48 SRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EK----IAECCQQFG---ADVIMTS 117 (277)
Q Consensus 48 m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~--~~----i~~~~~~~g---~~vi~~~ 117 (277)
+.+..|||+.+.. +.|+..++.+.+.. .--+|+|+.++ +. +.++.+++. ++++..+
T Consensus 41 p~VSViiP~~nee--------------~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~ 106 (373)
T TIGR03472 41 PPVSVLKPLHGDE--------------PELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDA 106 (373)
T ss_pred CCeEEEEECCCCC--------------hhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECC
Confidence 4577888887665 45566666665432 12477776541 22 223333332 3444333
Q ss_pred CcCCC--cH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 118 ESCRN--GT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 118 ~~~~~--g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+. .| +. ..+.++++.. +.|+++++|+|. ..+++.+++++..+.+
T Consensus 107 ~~-~G~~~K~~~l~~~~~~a--~ge~i~~~DaD~-~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 107 RR-HGPNRKVSNLINMLPHA--RHDILVIADSDI-SVGPDYLRQVVAPLAD 153 (373)
T ss_pred CC-CCCChHHHHHHHHHHhc--cCCEEEEECCCC-CcChhHHHHHHHHhcC
Confidence 22 22 12 2344555555 579999999998 6799999999988854
No 141
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=93.30 E-value=2 Score=38.18 Aligned_cols=100 Identities=14% Similarity=0.237 Sum_probs=57.2
Q ss_pred cccccccc--hHHHHHHHHhc----cC--CCCeEEEecC--chHHH--------HHHHHc--C--CeEEecCCcCCCcHH
Q 023786 68 LVNILGKP--MIQRTWERSKL----AT--TLDHLVVATD--DEKIA--------ECCQQF--G--ADVIMTSESCRNGTE 125 (277)
Q Consensus 68 l~~i~Gkp--Li~~~i~~l~~----~~--~i~~IvVvt~--~~~i~--------~~~~~~--g--~~vi~~~~~~~~g~~ 125 (277)
++|+.|.+ ++.-+++++.+ .. .--+|+|+-+ ++++. ++++++ + +.++.+++..-...+
T Consensus 4 liP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag 83 (254)
T cd04191 4 VMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRKAG 83 (254)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCccHH
Confidence 45666665 36666666542 11 1236766654 22221 133333 2 333444333212234
Q ss_pred HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
.+..++.....+.|+++++|+|. ...++.+.+++..+..++.
T Consensus 84 ~l~~~~~~~~~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~ 125 (254)
T cd04191 84 NIADFCRRWGSRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR 125 (254)
T ss_pred HHHHHHHHhCCCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC
Confidence 46666665323579999999999 8889999999998865444
No 142
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=93.24 E-value=2.3 Score=36.75 Aligned_cols=89 Identities=15% Similarity=0.187 Sum_probs=53.8
Q ss_pred chHHHHHHHHhccC--CC-CeEEEecC--chHHHHHHHHcC----CeEEecCCcCCCc-HHHHHHHHHHcccCCCEEEEE
Q 023786 75 PMIQRTWERSKLAT--TL-DHLVVATD--DEKIAECCQQFG----ADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 75 pLi~~~i~~l~~~~--~i-~~IvVvt~--~~~i~~~~~~~g----~~vi~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~ 144 (277)
-.|..+++.+.+.. .. -+|+|+.+ .+...++++++. .++...+.....| ...+..|++.. ..|+++++
T Consensus 14 ~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~~~~~i~~~~~~~~~G~~~a~n~g~~~a--~gd~i~~~ 91 (241)
T cd06427 14 EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLPSIFRVVVVPPSQPRTKPKACNYALAFA--RGEYVVIY 91 (241)
T ss_pred HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccCCCeeEEEecCCCCCchHHHHHHHHHhc--CCCEEEEE
Confidence 35666777765531 11 15666543 244444554432 3444332222223 34567788776 46999999
Q ss_pred cCCcccCCHHHHHHHHHHHHcC
Q 023786 145 QGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~~ 166 (277)
|+|. .+.++.+.++++.+.++
T Consensus 92 DaD~-~~~~~~l~~~~~~~~~~ 112 (241)
T cd06427 92 DAED-APDPDQLKKAVAAFARL 112 (241)
T ss_pred cCCC-CCChHHHHHHHHHHHhc
Confidence 9999 78899999999988653
No 143
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.07 E-value=2 Score=35.76 Aligned_cols=92 Identities=16% Similarity=0.272 Sum_probs=56.7
Q ss_pred ccccchHHHHHHHHhccCC-CCeEEEecC--chHHHHHHHHcC----CeEEecCCcCCCcHHHHHHHHHHc-ccCCCEEE
Q 023786 71 ILGKPMIQRTWERSKLATT-LDHLVVATD--DEKIAECCQQFG----ADVIMTSESCRNGTERCNEALQKL-EKKYDIVV 142 (277)
Q Consensus 71 i~GkpLi~~~i~~l~~~~~-i~~IvVvt~--~~~i~~~~~~~g----~~vi~~~~~~~~g~~~i~~al~~~-~~~~d~vl 142 (277)
.++...|..+++.+.+... -.+|+|+-+ .+...+++++++ +.++..++. .|...++..|++.. ..+.|+++
T Consensus 6 ~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~i~~~~~~~n-~g~~~~~n~~~~~a~~~~~d~v~ 84 (202)
T cd04185 6 YNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLDNIVYLRLPEN-LGGAGGFYEGVRRAYELGYDWIW 84 (202)
T ss_pred eCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCCceEEEECccc-cchhhHHHHHHHHHhccCCCEEE
Confidence 3455678888998876432 246777654 244555555443 234443322 23333344445433 22578999
Q ss_pred EEcCCcccCCHHHHHHHHHHHH
Q 023786 143 NIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 143 v~~gD~P~i~~~~i~~li~~~~ 164 (277)
++++|. .++++.++.+++.+.
T Consensus 85 ~ld~D~-~~~~~~l~~l~~~~~ 105 (202)
T cd04185 85 LMDDDA-IPDPDALEKLLAYAD 105 (202)
T ss_pred EeCCCC-CcChHHHHHHHHHHh
Confidence 999999 778999999998876
No 144
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=93.05 E-value=1.7 Score=36.66 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=53.0
Q ss_pred cccchHHHHHHHHhcc-----CCCCeEEEecC--chHHH----HHHHHcCC--eEEecCCcCCCcHHHHHHHHHHcccCC
Q 023786 72 LGKPMIQRTWERSKLA-----TTLDHLVVATD--DEKIA----ECCQQFGA--DVIMTSESCRNGTERCNEALQKLEKKY 138 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~-----~~i~~IvVvt~--~~~i~----~~~~~~g~--~vi~~~~~~~~g~~~i~~al~~~~~~~ 138 (277)
+....|..+++.+.+. ....+|+|+-+ .+... ++..+++. .++..+.. .|-...+..|++.. ..
T Consensus 7 N~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n-~G~~~a~~~g~~~a--~g 83 (211)
T cd04188 7 NEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKN-RGKGGAVRAGMLAA--RG 83 (211)
T ss_pred ChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccC-CCcHHHHHHHHHHh--cC
Confidence 3344556666665542 11236777654 12222 33333443 33433222 23344567788877 35
Q ss_pred CEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 139 DIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 139 d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
|+++++|+|. ..+++.+..+++.+.+
T Consensus 84 d~i~~ld~D~-~~~~~~l~~l~~~~~~ 109 (211)
T cd04188 84 DYILFADADL-ATPFEELEKLEEALKT 109 (211)
T ss_pred CEEEEEeCCC-CCCHHHHHHHHHHHhc
Confidence 9999999999 6789999999988544
No 145
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.92 E-value=1.8 Score=36.97 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=53.9
Q ss_pred cchHHHHHHHHhccCC---CCeEEEecC--chHHHHHHHHcC-----CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEE
Q 023786 74 KPMIQRTWERSKLATT---LDHLVVATD--DEKIAECCQQFG-----ADVIMTSESCRNGTERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 74 kpLi~~~i~~l~~~~~---i~~IvVvt~--~~~i~~~~~~~g-----~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv 143 (277)
.+.+..+++.+.+... --+|+|+-+ .++..+.++.+. +.++..+ ..+.......|++.. ..|++++
T Consensus 12 ~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~a~N~g~~~a--~~d~v~~ 87 (249)
T cd02525 12 EKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNP--KRIQSAGLNIGIRNS--RGDIIIR 87 (249)
T ss_pred hhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCC--CCCchHHHHHHHHHh--CCCEEEE
Confidence 3566777787765421 236777654 233334443322 3344322 223334466677766 5799999
Q ss_pred EcCCcccCCHHHHHHHHHHHHcC
Q 023786 144 IQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+|+|. .++++.++++++.+.+.
T Consensus 88 lD~D~-~~~~~~l~~~~~~~~~~ 109 (249)
T cd02525 88 VDAHA-VYPKDYILELVEALKRT 109 (249)
T ss_pred ECCCc-cCCHHHHHHHHHHHhcC
Confidence 99999 77999999999877653
No 146
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=92.87 E-value=3.2 Score=33.90 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=32.8
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
|....+..|++.. ..|+++++|+|.. .+++.++++++.+..+.+
T Consensus 67 G~~~a~n~g~~~a--~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~~ 110 (181)
T cd04187 67 GQQAALLAGLDHA--RGDAVITMDADLQ-DPPELIPEMLAKWEEGYD 110 (181)
T ss_pred CcHHHHHHHHHhc--CCCEEEEEeCCCC-CCHHHHHHHHHHHhCCCc
Confidence 4444567788776 3589999999995 578899999988654433
No 147
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=92.61 E-value=2.9 Score=37.58 Aligned_cols=72 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred HHHHHHHHcCCe-EEecCCcC-CCcHHH-HHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHH---HHHcCCCcEEEEE
Q 023786 101 KIAECCQQFGAD-VIMTSESC-RNGTER-CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVK---ALQAAPDAVFSTA 174 (277)
Q Consensus 101 ~i~~~~~~~g~~-vi~~~~~~-~~g~~~-i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~---~~~~~~~~~v~~~ 174 (277)
.+.+.++..+.. ++...... .=+.+. .-.|++.. ..|+++++|+|. +++++.++.+++ .+.++.++.+..+
T Consensus 51 ~l~~~~~~~~~~~~i~~~~~~~~f~~a~arN~g~~~A--~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~~~~~~~~~~p 127 (281)
T PF10111_consen 51 ELKKLCEKNGFIRYIRHEDNGEPFSRAKARNIGAKYA--RGDYLIFLDADC-IPSPDFIEKLLNHVKKLDKNPNAFLVYP 127 (281)
T ss_pred HHHHHHhccCceEEEEcCCCCCCcCHHHHHHHHHHHc--CCCEEEEEcCCe-eeCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 344555655655 33322110 113333 33455655 579999999999 889999999999 5555444555544
Q ss_pred e
Q 023786 175 V 175 (277)
Q Consensus 175 ~ 175 (277)
+
T Consensus 128 ~ 128 (281)
T PF10111_consen 128 C 128 (281)
T ss_pred e
Confidence 4
No 148
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.56 E-value=3 Score=34.65 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=53.7
Q ss_pred cccchHHHHHHHHhccCC-CCeEEEecC--chH----HHHHHHHcCCeEE-ecCCcCCCcHHHHHHHHHHcccCCCEEEE
Q 023786 72 LGKPMIQRTWERSKLATT-LDHLVVATD--DEK----IAECCQQFGADVI-MTSESCRNGTERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~-i~~IvVvt~--~~~----i~~~~~~~g~~vi-~~~~~~~~g~~~i~~al~~~~~~~d~vlv 143 (277)
+....|..+++.+.+... --+|+|+-+ .+. +.++..+++..+. ...+.-.|....+..|+... +.|++++
T Consensus 8 n~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~--~g~~v~~ 85 (214)
T cd04196 8 NGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAA--DGDYVFF 85 (214)
T ss_pred CcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhC--CCCEEEE
Confidence 344577888888876421 126666654 122 2233333322222 22222223334456677665 5799999
Q ss_pred EcCCcccCCHHHHHHHHHHHHcC
Q 023786 144 IQGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~~ 166 (277)
+|.|. .+.++.+..+++.+.+.
T Consensus 86 ld~Dd-~~~~~~l~~~~~~~~~~ 107 (214)
T cd04196 86 CDQDD-IWLPDKLERLLKAFLKD 107 (214)
T ss_pred ECCCc-ccChhHHHHHHHHHhcC
Confidence 99998 66789999999885443
No 149
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=92.49 E-value=2.3 Score=43.48 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCCCC--eEEEecC--chHH--------HHHHHHcC--CeEEecC--CcCCCcHHHHHHHHHHcccCCCE
Q 023786 77 IQRTWERSKLATTLD--HLVVATD--DEKI--------AECCQQFG--ADVIMTS--ESCRNGTERCNEALQKLEKKYDI 140 (277)
Q Consensus 77 i~~~i~~l~~~~~i~--~IvVvt~--~~~i--------~~~~~~~g--~~vi~~~--~~~~~g~~~i~~al~~~~~~~d~ 140 (277)
++-+++.+.+.+.-+ +|+|+.| ++++ .+.+++++ .++.++. +....-...+..+++....++|+
T Consensus 144 L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~~~~~ey 223 (691)
T PRK05454 144 LRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRWGGAYDY 223 (691)
T ss_pred HHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhcCCCcCE
Confidence 555566555432222 6677765 2332 23344442 3444432 22111123466667665446799
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 141 VVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 141 vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
++++|+|. .++++.+.+++..+..+++
T Consensus 224 ivvLDADs-~m~~d~L~~lv~~m~~dP~ 250 (691)
T PRK05454 224 MVVLDADS-LMSGDTLVRLVRLMEANPR 250 (691)
T ss_pred EEEEcCCC-CCCHHHHHHHHHHHhhCcC
Confidence 99999999 8889999999998865444
No 150
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=92.20 E-value=3.2 Score=35.15 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred cccchHHHHHHHHhccCCC--CeEEEecCc--hH----HHHHHHHc---CCeEEecCC--cCCCcH-HHHHHHHHHcccC
Q 023786 72 LGKPMIQRTWERSKLATTL--DHLVVATDD--EK----IAECCQQF---GADVIMTSE--SCRNGT-ERCNEALQKLEKK 137 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~i--~~IvVvt~~--~~----i~~~~~~~---g~~vi~~~~--~~~~g~-~~i~~al~~~~~~ 137 (277)
++...|+.+++.+.+...- -+|+|+-+. +. +.++..++ ++.++.... ....|. .....|++.. .
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a--~ 84 (219)
T cd06913 7 NGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQS--S 84 (219)
T ss_pred CcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhc--C
Confidence 5567888888888754211 267776642 22 22222222 344433221 111233 2345566665 4
Q ss_pred CCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEE
Q 023786 138 YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFS 172 (277)
Q Consensus 138 ~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~ 172 (277)
.|+++++|+|. +..++.+++++..+.++.+.++.
T Consensus 85 gd~i~~lD~D~-~~~~~~l~~~~~~~~~~~~~~v~ 118 (219)
T cd06913 85 GRYLCFLDSDD-VMMPQRIRLQYEAALQHPNSIIG 118 (219)
T ss_pred CCEEEEECCCc-cCChhHHHHHHHHHHhCCCcEEE
Confidence 68999999998 67788898888877655444443
No 151
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=91.92 E-value=3.1 Score=39.94 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=54.7
Q ss_pred chHHHHHHHHhccC-CCCeEEEecC--chH----HHHHHHHc-CCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcC
Q 023786 75 PMIQRTWERSKLAT-TLDHLVVATD--DEK----IAECCQQF-GADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQG 146 (277)
Q Consensus 75 pLi~~~i~~l~~~~-~i~~IvVvt~--~~~----i~~~~~~~-g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~g 146 (277)
.-+..+++.+.+.. .--+|+|+.+ +++ +.++..++ .++++...+ ..|-...+..|++.. +.|+++++|+
T Consensus 88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~-n~Gka~AlN~gl~~a--~~d~iv~lDA 164 (444)
T PRK14583 88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH-NQGKAIALRMGAAAA--RSEYLVCIDG 164 (444)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC-CCCHHHHHHHHHHhC--CCCEEEEECC
Confidence 45677777776542 1236777764 222 22333333 345554322 223233466677665 5799999999
Q ss_pred CcccCCHHHHHHHHHHHHcCCC
Q 023786 147 DEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 147 D~P~i~~~~i~~li~~~~~~~~ 168 (277)
|. ..+++.+..+++.+.++++
T Consensus 165 D~-~~~~d~L~~lv~~~~~~~~ 185 (444)
T PRK14583 165 DA-LLDKNAVPYLVAPLIANPR 185 (444)
T ss_pred CC-CcCHHHHHHHHHHHHhCCC
Confidence 99 7789999999988865433
No 152
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=91.16 E-value=1.2 Score=32.89 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=46.6
Q ss_pred cchHHHHHHHHhccCCCCeEEEecC--chHHHHHHHHc-CCeEEecCCcCCCcH-H-HHHHHHHHcccCCCEEEEEcCCc
Q 023786 74 KPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQQF-GADVIMTSESCRNGT-E-RCNEALQKLEKKYDIVVNIQGDE 148 (277)
Q Consensus 74 kpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~~~-g~~vi~~~~~~~~g~-~-~i~~al~~~~~~~d~vlv~~gD~ 148 (277)
.++|...+...... |+++++|..+ .+...++++++ ++.++.......... . ...+++.....+.|+++.+|+|.
T Consensus 4 ~~~L~~wl~~~~~l-G~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DE 82 (97)
T PF13704_consen 4 ADYLPEWLAHHLAL-GVDHIYIYDDGSTDGTREILRALPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADE 82 (97)
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEECCCCccHHHHHHhCCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeE
Confidence 45777778877776 7999999876 24555666554 455554433332221 1 12333322212579999999998
Q ss_pred ccCC
Q 023786 149 PLIE 152 (277)
Q Consensus 149 P~i~ 152 (277)
-+..
T Consensus 83 fl~~ 86 (97)
T PF13704_consen 83 FLVP 86 (97)
T ss_pred EEec
Confidence 4443
No 153
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=91.09 E-value=3.3 Score=35.46 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=48.9
Q ss_pred chHHHHHHHHhccCC-C--CeEEEecCc-hH----HHHHHHH---cCCeEEec-CCcCCCc-HHHHHHHHHHcccCCCEE
Q 023786 75 PMIQRTWERSKLATT-L--DHLVVATDD-EK----IAECCQQ---FGADVIMT-SESCRNG-TERCNEALQKLEKKYDIV 141 (277)
Q Consensus 75 pLi~~~i~~l~~~~~-i--~~IvVvt~~-~~----i~~~~~~---~g~~vi~~-~~~~~~g-~~~i~~al~~~~~~~d~v 141 (277)
..|..+|+.+.+... . -+|+|+-+. +. +.+...+ .+.++... .....|+ ...+..|++.. +.|++
T Consensus 14 ~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a--~~~~i 91 (232)
T cd06437 14 YVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA--KGEYV 91 (232)
T ss_pred HHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhC--CCCEE
Confidence 466777777765321 1 145554431 22 2222222 23344322 1222343 33466777766 57999
Q ss_pred EEEcCCcccCCHHHHHHHHHHHH
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~ 164 (277)
+++|+|. .+.++.++.+...+.
T Consensus 92 ~~~DaD~-~~~~~~l~~~~~~~~ 113 (232)
T cd06437 92 AIFDADF-VPPPDFLQKTPPYFA 113 (232)
T ss_pred EEEcCCC-CCChHHHHHhhhhhc
Confidence 9999999 678999999766553
No 154
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.65 E-value=5.7 Score=33.08 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=48.9
Q ss_pred chHHHHHHHHhccC-CCCeEEEecCc--hH----HHHHHHHcC-C--eEEecCCcCCCc--H-HHHHHHHHHcccCCCEE
Q 023786 75 PMIQRTWERSKLAT-TLDHLVVATDD--EK----IAECCQQFG-A--DVIMTSESCRNG--T-ERCNEALQKLEKKYDIV 141 (277)
Q Consensus 75 pLi~~~i~~l~~~~-~i~~IvVvt~~--~~----i~~~~~~~g-~--~vi~~~~~~~~g--~-~~i~~al~~~~~~~d~v 141 (277)
+-|...|+.+.+.. .--+|+||.+. +. +.++...+. . .++..... .|. . ..+..|++.. ..|++
T Consensus 14 ~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~n~g~~~a--~~d~i 90 (196)
T cd02520 14 PNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVNNLIKGYEEA--RYDIL 90 (196)
T ss_pred ccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHHHHHHHHHhC--CCCEE
Confidence 34566666665431 11367776642 22 223333332 2 33333222 122 1 2344577665 47999
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHc
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+++|+|. .++++.++.+++.+.+
T Consensus 91 ~~~D~D~-~~~~~~l~~l~~~~~~ 113 (196)
T cd02520 91 VISDSDI-SVPPDYLRRMVAPLMD 113 (196)
T ss_pred EEECCCc-eEChhHHHHHHHHhhC
Confidence 9999998 6689999999987643
No 155
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=90.35 E-value=5.5 Score=33.71 Aligned_cols=176 Identities=18% Similarity=0.231 Sum_probs=76.6
Q ss_pred chHHHHHHHHhccCC-CCeEEEecC--c----hHHHHHHHHcC---CeEEecCCcCCC--cH-HHHHHHHHHcccCCCEE
Q 023786 75 PMIQRTWERSKLATT-LDHLVVATD--D----EKIAECCQQFG---ADVIMTSESCRN--GT-ERCNEALQKLEKKYDIV 141 (277)
Q Consensus 75 pLi~~~i~~l~~~~~-i~~IvVvt~--~----~~i~~~~~~~g---~~vi~~~~~~~~--g~-~~i~~al~~~~~~~d~v 141 (277)
..|..+++.+.+... --+|+|+.+ + +.+.+++..++ +.++..+.. .+ +. ..+..+++.. +.|++
T Consensus 14 ~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~-~g~~~k~~a~n~~~~~~--~~d~i 90 (228)
T PF13641_consen 14 DVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRN-PGPGGKARALNEALAAA--RGDYI 90 (228)
T ss_dssp HHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-----HHHHHHHHHHHHHHHH-----SEE
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCC-CCcchHHHHHHHHHHhc--CCCEE
Confidence 467777777775321 125566553 2 23444444443 344443221 12 12 2356777776 47999
Q ss_pred EEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeecCCcCCCCCCCCCCCCCc
Q 023786 142 VNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPY 221 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 221 (277)
+++|+|. .++++.++.+++.+....-..++... ... .+.+.+... ...-....+.. ..... . .. ...
T Consensus 91 ~~lD~D~-~~~p~~l~~~~~~~~~~~~~~v~~~~-~~~----~~~~~~~~~-~~~~~~~~~~~-~~~~~-~---~~-~~~ 157 (228)
T PF13641_consen 91 LFLDDDT-VLDPDWLERLLAAFADPGVGAVGGPV-FPD----NDRNWLTRL-QDLFFARWHLR-FRSGR-R---AL-GVA 157 (228)
T ss_dssp EEE-SSE-EE-CHHHHHHHHHHHBSS--EEEEEE-EET----TCCCEEEE--TT--S-EETTT-S-TT--B--------S
T ss_pred EEECCCc-EECHHHHHHHHHHHHhCCCCeEeeeE-eec----CCCCHHHHH-HHHHHhhhhhh-hhhhh-c---cc-cee
Confidence 9999999 66999999999998432112223221 111 011111111 00000001000 00000 0 00 112
Q ss_pred eEEEEEEeecHHHHhhccCCCCCCCccccChH-HHHHHHcCCeeEEEE
Q 023786 222 LLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLE-QLKVLENGYKMKVQQ 268 (277)
Q Consensus 222 ~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~-~l~~le~g~~v~~~~ 268 (277)
..+.+...|+++.++......+.. .-|+.+ .+++...|+++....
T Consensus 158 ~~~G~~~~~rr~~~~~~g~fd~~~--~~eD~~l~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 158 FLSGSGMLFRRSALEEVGGFDPFI--LGEDFDLCLRLRAAGWRIVYAP 203 (228)
T ss_dssp -B--TEEEEEHHHHHHH-S--SSS--SSHHHHHHHHHHHTT--EEEEE
T ss_pred eccCcEEEEEHHHHHHhCCCCCCC--cccHHHHHHHHHHCCCcEEEEC
Confidence 234467899999998885433321 113333 356788999887765
No 156
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=90.25 E-value=5.5 Score=33.20 Aligned_cols=92 Identities=18% Similarity=0.266 Sum_probs=54.6
Q ss_pred cccchHHHHHHHHhccCCCCeEEEecC--chHHHHHHH-H---cCCeEEecC-CcCCCcH-HHHHHHHHHccc-------
Q 023786 72 LGKPMIQRTWERSKLATTLDHLVVATD--DEKIAECCQ-Q---FGADVIMTS-ESCRNGT-ERCNEALQKLEK------- 136 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~~~~i~~IvVvt~--~~~i~~~~~-~---~g~~vi~~~-~~~~~g~-~~i~~al~~~~~------- 136 (277)
+....|..+++.+.+...-.+|+|+-+ .+...+.++ . .++.++... +....|. ..+..|++.+..
T Consensus 7 Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~ 86 (191)
T cd06436 7 NEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGA 86 (191)
T ss_pred ccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhheecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhcccccc
Confidence 556678888988876532236777664 233334443 1 134444332 1122343 345566665421
Q ss_pred --CCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 137 --KYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 137 --~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
+.|+++++|+|. .++++.++.+...+.
T Consensus 87 ~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~ 115 (191)
T cd06436 87 DPERVIIAVIDADG-RLDPNALEAVAPYFS 115 (191)
T ss_pred CCCccEEEEECCCC-CcCHhHHHHHHHhhc
Confidence 237899999999 678999999777664
No 157
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.79 E-value=7.5 Score=32.56 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=53.5
Q ss_pred cchHHHHHHHHhccC-CCCeEEEecC--chHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCccc
Q 023786 74 KPMIQRTWERSKLAT-TLDHLVVATD--DEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPL 150 (277)
Q Consensus 74 kpLi~~~i~~l~~~~-~i~~IvVvt~--~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~ 150 (277)
...|..+++.+.+.. ...+|+|+-+ .+...+.+++.++.++.. . .|.......|++.. ..++++++|+|. .
T Consensus 11 ~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~~--~-~g~~~a~n~g~~~a--~~~~i~~~D~D~-~ 84 (221)
T cd02522 11 AENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVISS--P-KGRARQMNAGAAAA--RGDWLLFLHADT-R 84 (221)
T ss_pred HHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEeC--C-cCHHHHHHHHHHhc--cCCEEEEEcCCC-C
Confidence 346788888876542 2346777654 244445555544443332 1 22222344566666 368999999998 6
Q ss_pred CCHHHHHHHHHHHHcC
Q 023786 151 IEPEIIDGVVKALQAA 166 (277)
Q Consensus 151 i~~~~i~~li~~~~~~ 166 (277)
++++.+++++..+.+.
T Consensus 85 ~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 85 LPPDWDAAIIETLRAD 100 (221)
T ss_pred CChhHHHHHHHHhhcC
Confidence 7899999987666543
No 158
>PRK10073 putative glycosyl transferase; Provisional
Probab=88.80 E-value=7.3 Score=35.93 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=53.1
Q ss_pred cchHHHHHHHHhccCC-CCeEEEecC--chHHH----HHHHHc-CCeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEEE
Q 023786 74 KPMIQRTWERSKLATT-LDHLVVATD--DEKIA----ECCQQF-GADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVNI 144 (277)
Q Consensus 74 kpLi~~~i~~l~~~~~-i~~IvVvt~--~~~i~----~~~~~~-g~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv~ 144 (277)
...|..+++.+.+... --+|+|+-+ .+... +++.+. .+.++. +. .+|. .....|++.. ..|+++++
T Consensus 18 ~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~~i~vi~--~~-n~G~~~arN~gl~~a--~g~yi~fl 92 (328)
T PRK10073 18 GKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAENYPHVRLLH--QA-NAGVSVARNTGLAVA--TGKYVAFP 92 (328)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEE--CC-CCChHHHHHHHHHhC--CCCEEEEE
Confidence 3567788888765422 126777654 12222 233332 244443 22 2444 3455677777 46899999
Q ss_pred cCCcccCCHHHHHHHHHHHHcC
Q 023786 145 QGDEPLIEPEIIDGVVKALQAA 166 (277)
Q Consensus 145 ~gD~P~i~~~~i~~li~~~~~~ 166 (277)
|+|- ++.++.++.+++.+.++
T Consensus 93 D~DD-~~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 93 DADD-VVYPTMYETLMTMALED 113 (328)
T ss_pred CCCC-ccChhHHHHHHHHHHhC
Confidence 9999 67899999999877653
No 159
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=88.72 E-value=0.28 Score=47.24 Aligned_cols=77 Identities=22% Similarity=0.099 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCchhHHHHHHhhccchhhhccceecccCCCCCCCceEEEEecCCCCcccc---cccccccc---ccchH
Q 023786 4 KSICSPSESSSSTKSWIVHGIVAGAAIAVAVGARAYLGRSKNFRSRVVGIIPARFASSRFE---GKPLVNIL---GKPMI 77 (277)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~i~aIIlAaG~ssRl~---~K~l~~i~---GkpLi 77 (277)
++.|..+|-.-+ ++|.+-+-. .-.+.++.+.++..-..-+..++++|||.|||++ +|.+.+++ |+.++
T Consensus 58 ~~~~~~~p~p~~-~~~~~~~~~-----~~d~d~~~~~G~~~i~~~~~a~~llaGgqgtRLg~~~pkg~~~~G~~~~~slf 131 (477)
T KOG2388|consen 58 KPVGEIRPVPES-KSWPLKERG-----LDDVDQWWKEGLRLIAEGKVAVVLLAGGQGTRLGSSGPKGCYPIGLPSGKSLF 131 (477)
T ss_pred CcccccCCCCcc-ccceecccC-----chhhhHHHhcChhhhhcCcceEEEeccCceeeeccCCCcceeecCCccccchh
Confidence 556666665555 666543321 1233334444444333345679999999999997 79988886 56688
Q ss_pred HHHHHHHhc
Q 023786 78 QRTWERSKL 86 (277)
Q Consensus 78 ~~~i~~l~~ 86 (277)
++..+.++.
T Consensus 132 ~~qae~il~ 140 (477)
T KOG2388|consen 132 QIQAERILK 140 (477)
T ss_pred hhhHHHHHH
Confidence 888887653
No 160
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=88.57 E-value=5.8 Score=36.73 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=34.6
Q ss_pred CeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 111 ADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 111 ~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+.++..+.. .|-..++..|++.. ..|+++++|+|. ..+++++.++++.+.+
T Consensus 139 i~vi~~~~N-~G~~~A~~~Gi~~a--~gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 139 IRLLSLLRN-KGKGGAVRIGMLAS--RGKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred EEEEEcCCC-CChHHHHHHHHHHc--cCCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 455543322 23334467788766 468999999998 5678899999887753
No 161
>PRK10018 putative glycosyl transferase; Provisional
Probab=86.67 E-value=12 Score=33.70 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=53.3
Q ss_pred ccchHHHHHHHHhccCCC-CeEEEecCc----hHHHHHHHHcC---CeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEE
Q 023786 73 GKPMIQRTWERSKLATTL-DHLVVATDD----EKIAECCQQFG---ADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 73 GkpLi~~~i~~l~~~~~i-~~IvVvt~~----~~i~~~~~~~g---~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv 143 (277)
....|..+++.+.+...- -+|+|+-+. +.+.+++..++ +.++..+ ...|. .+...|++.. ..+++++
T Consensus 16 ~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~~~~ri~~i~~~--~n~G~~~a~N~gi~~a--~g~~I~~ 91 (279)
T PRK10018 16 RQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTALNDPRITYIHND--INSGACAVRNQAIMLA--QGEYITG 91 (279)
T ss_pred CHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHcCCCCEEEEECC--CCCCHHHHHHHHHHHc--CCCEEEE
Confidence 334567788877654211 266666541 33445554332 3333332 22444 3455677776 4689999
Q ss_pred EcCCcccCCHHHHHHHHHHHHc
Q 023786 144 IQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+|+|. ...++.+..+++.+.+
T Consensus 92 lDaDD-~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 92 IDDDD-EWTPNRLSVFLAHKQQ 112 (279)
T ss_pred ECCCC-CCCccHHHHHHHHHHh
Confidence 99999 6678889999887765
No 162
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=85.58 E-value=11 Score=32.49 Aligned_cols=90 Identities=14% Similarity=0.310 Sum_probs=53.2
Q ss_pred ccchHHHHHHHHhccCCCC-eEEEecCc-----hHHHHHH-HHcC-CeEEecCCcCCCcH-HHHHHHHHHcccCCCEEEE
Q 023786 73 GKPMIQRTWERSKLATTLD-HLVVATDD-----EKIAECC-QQFG-ADVIMTSESCRNGT-ERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 73 GkpLi~~~i~~l~~~~~i~-~IvVvt~~-----~~i~~~~-~~~g-~~vi~~~~~~~~g~-~~i~~al~~~~~~~d~vlv 143 (277)
+-|++.|.+.......+.+ +|+++-+. .++.+.+ +.+| -++...+-.-..|. +...+|++++. -+++++
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~--g~fivi 94 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHAT--GDFIVI 94 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhcc--CCeEEE
Confidence 3467788877765433444 56665541 2333333 2344 23433322223344 34678998884 588999
Q ss_pred EcCCcccCCHHHHHHHHHHHHc
Q 023786 144 IQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~~ 165 (277)
+|||. =-.|+.+-++++..++
T Consensus 95 MDaDl-sHhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 95 MDADL-SHHPKFIPEFIRLQKE 115 (238)
T ss_pred EeCcc-CCCchhHHHHHHHhhc
Confidence 99997 3467888888876655
No 163
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=78.64 E-value=43 Score=31.24 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=58.1
Q ss_pred cccccc-hHHHHHHHHhccC-C--CCeEEEecC--chHHHHHHHHc--CCeEEecCCc--CC-C------cHHHH----H
Q 023786 70 NILGKP-MIQRTWERSKLAT-T--LDHLVVATD--DEKIAECCQQF--GADVIMTSES--CR-N------GTERC----N 128 (277)
Q Consensus 70 ~i~Gkp-Li~~~i~~l~~~~-~--i~~IvVvt~--~~~i~~~~~~~--g~~vi~~~~~--~~-~------g~~~i----~ 128 (277)
...++| -+..+|+++.+.. . -.+|+|+.+ +++..+.++.+ .++.+..+.. .. + +..++ .
T Consensus 7 ~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk 86 (334)
T cd02514 7 IACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFGDGVTHIQHPPISIKNVNPPHKFQGYYRIARHYK 86 (334)
T ss_pred EecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhccccEEEEcccccccccCcccccchhhHHHHHHH
Confidence 345677 6899999998762 2 236788765 34455666666 4554432211 11 1 11222 2
Q ss_pred HHHHHcc--cCCCEEEEEcCCcccCCHHHH---HHHHHHHHcCCCcEEEE
Q 023786 129 EALQKLE--KKYDIVVNIQGDEPLIEPEII---DGVVKALQAAPDAVFST 173 (277)
Q Consensus 129 ~al~~~~--~~~d~vlv~~gD~P~i~~~~i---~~li~~~~~~~~~~v~~ 173 (277)
.|+..+- .+.+.++++..|. .+.|+-+ +.++..++++ ..+..+
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D-~~v~~I 134 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDL-DIAPDFFSYFQATLPLLEED-PSLWCI 134 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcC-CCEEEE
Confidence 3554431 1478999999999 7788744 5555555553 344443
No 164
>PRK10063 putative glycosyl transferase; Provisional
Probab=78.52 E-value=31 Score=30.32 Aligned_cols=81 Identities=6% Similarity=0.060 Sum_probs=43.2
Q ss_pred cccchHHHHHHHHhc----cCCCCeEEEecC--chHHHHHHHHc----CCeEEecCCcCCCcHHHHHHHHHHcccCCCEE
Q 023786 72 LGKPMIQRTWERSKL----ATTLDHLVVATD--DEKIAECCQQF----GADVIMTSESCRNGTERCNEALQKLEKKYDIV 141 (277)
Q Consensus 72 ~GkpLi~~~i~~l~~----~~~i~~IvVvt~--~~~i~~~~~~~----g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~v 141 (277)
+....|..+++.+.+ ...--+|+|+-+ .+...++++++ .++++.. ...|-...+..|++.. ..|++
T Consensus 11 N~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~~i~~i~~--~~~G~~~A~N~Gi~~a--~g~~v 86 (248)
T PRK10063 11 RNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIFNLRFVSE--PDNGIYDAMNKGIAMA--QGRFA 86 (248)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccCCEEEEEC--CCCCHHHHHHHHHHHc--CCCEE
Confidence 334456777776642 111125666643 24444555544 2344432 2223334566788776 46899
Q ss_pred EEEcCCcccCCHHHHH
Q 023786 142 VNIQGDEPLIEPEIID 157 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~ 157 (277)
+++|+|- +..++.++
T Consensus 87 ~~ld~DD-~~~~~~~~ 101 (248)
T PRK10063 87 LFLNSGD-IFHQDAAN 101 (248)
T ss_pred EEEeCCc-ccCcCHHH
Confidence 9999876 33454443
No 165
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.86 E-value=31 Score=26.90 Aligned_cols=98 Identities=22% Similarity=0.281 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCC-eEEEecC--chHHHHHHHHcCCe---EEecCCcC
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLD-HLVVATD--DEKIAECCQQFGAD---VIMTSESC 120 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~-~IvVvt~--~~~i~~~~~~~g~~---vi~~~~~~ 120 (277)
+|++..|||+-... ..|..+++.+.+....+ +|+|+-+ .+...+.+.++... +.......
T Consensus 2 ~~~~siiip~~n~~--------------~~l~~~l~s~~~q~~~~~eiivvddgs~d~t~~~~~~~~~~~~~~~~~~~~~ 67 (291)
T COG0463 2 MPKVSVVIPTYNEE--------------EYLPEALESLLNQTYKDFEIIVVDDGSTDGTTEIAIEYGAKDVRVIRLINER 67 (291)
T ss_pred CccEEEEEeccchh--------------hhHHHHHHHHHhhhhcceEEEEEeCCCCCChHHHHHHHhhhcceEEEeeccc
Confidence 45666777765443 56677777776543222 5666554 24444455444322 22221122
Q ss_pred CCcH-HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHH
Q 023786 121 RNGT-ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (277)
Q Consensus 121 ~~g~-~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~ 162 (277)
..|. .....++.... .++++.+++|.- .+..+..+.+.
T Consensus 68 ~~g~~~~~~~~~~~~~--~~~~~~~d~d~~--~~~~~~~~~~~ 106 (291)
T COG0463 68 NGGLGAARNAGLEYAR--GDYIVFLDADDQ--HPPELIPLVAA 106 (291)
T ss_pred CCChHHHHHhhHHhcc--CCEEEEEccCCC--CCHHHHHHHHH
Confidence 2343 34566776663 489999999995 45455554443
No 166
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.12 E-value=17 Score=36.11 Aligned_cols=92 Identities=18% Similarity=0.423 Sum_probs=53.7
Q ss_pred HHHHHHHHhccCCCC--eEEEecC--chHHH--------HHHHHcC--CeEEecCC--cCCCcHHHHHHHHHHcccCCCE
Q 023786 77 IQRTWERSKLATTLD--HLVVATD--DEKIA--------ECCQQFG--ADVIMTSE--SCRNGTERCNEALQKLEKKYDI 140 (277)
Q Consensus 77 i~~~i~~l~~~~~i~--~IvVvt~--~~~i~--------~~~~~~g--~~vi~~~~--~~~~g~~~i~~al~~~~~~~d~ 140 (277)
++-+.+.+.+.+..+ +++|..+ ++++. +++++.+ .+++++.- ....-...+..-.+.....+++
T Consensus 164 LrA~~eSla~Tg~~~~FD~FVLSDs~dpdialAEq~a~~~l~~e~~g~~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~ 243 (736)
T COG2943 164 LRATYESLAATGHAEHFDFFVLSDSRDPDIALAEQKAWAELCRELGGEGNIFYRRRRRNVKRKAGNIADFCRRWGSAYSY 243 (736)
T ss_pred HHHHHHHHHhhCCcccceEEEEcCCCCchhhhhHHHHHHHHHHHhCCCCceeeehHhhhhcccccCHHHHHHHhCcccce
Confidence 455556665554322 3555554 44432 3344444 46665421 1111111244444444456899
Q ss_pred EEEEcCCcccCCHHHHHHHHHHHHcCCCc
Q 023786 141 VVNIQGDEPLIEPEIIDGVVKALQAAPDA 169 (277)
Q Consensus 141 vlv~~gD~P~i~~~~i~~li~~~~~~~~~ 169 (277)
.+|+|+|+ ..+.+.+-++++.++.++++
T Consensus 244 MlVLDADS-vMtgd~lvrLv~~ME~~P~a 271 (736)
T COG2943 244 MLVLDADS-VMTGDCLVRLVRLMEANPDA 271 (736)
T ss_pred EEEeeccc-ccCchHHHHHHHHHhhCCCC
Confidence 99999999 67899999999999877665
No 167
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=76.77 E-value=19 Score=31.31 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 137 KYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 137 ~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
+.|+++++|+|. .++++.+..+++.+..+++
T Consensus 73 ~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p~ 103 (244)
T cd04190 73 DPEFILLVDADT-KFDPDSIVQLYKAMDKDPE 103 (244)
T ss_pred CCCEEEEECCCC-cCCHhHHHHHHHHHHhCCC
Confidence 579999999999 6689999999998865444
No 168
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=73.71 E-value=45 Score=26.73 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=51.0
Q ss_pred ccchHHHHHHHHhccC-CCCeEEEecCc--hHHHHHHHHc----CCeEEecCCcCCC-cH-HHHHHHHHHcccCCCEEEE
Q 023786 73 GKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQF----GADVIMTSESCRN-GT-ERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 73 GkpLi~~~i~~l~~~~-~i~~IvVvt~~--~~i~~~~~~~----g~~vi~~~~~~~~-g~-~~i~~al~~~~~~~d~vlv 143 (277)
....+..+++.+.+.. ...+|+|+-+. +...++++++ ..++....+...+ +. .....|++.. ..+++++
T Consensus 8 ~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a--~g~~i~~ 85 (182)
T cd06420 8 RPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA--KGDYLIF 85 (182)
T ss_pred ChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh--cCCEEEE
Confidence 3456788888887542 23467776542 3333333322 2233211111112 22 2345566665 4689999
Q ss_pred EcCCcccCCHHHHHHHHHHH
Q 023786 144 IQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~ 163 (277)
+|+|. ..+++.++++++.+
T Consensus 86 lD~D~-~~~~~~l~~~~~~~ 104 (182)
T cd06420 86 IDGDC-IPHPDFIADHIELA 104 (182)
T ss_pred EcCCc-ccCHHHHHHHHHHh
Confidence 99999 67898899998876
No 169
>COG3222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.55 E-value=46 Score=28.39 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=60.1
Q ss_pred cchHHHHHHHHhccCCCCeEEEecC----chHHHHHHHHcCCeEEecCCcCCCcHHHHHHHH-HHcccCCCEEEEEcCCc
Q 023786 74 KPMIQRTWERSKLATTLDHLVVATD----DEKIAECCQQFGADVIMTSESCRNGTERCNEAL-QKLEKKYDIVVNIQGDE 148 (277)
Q Consensus 74 kpLi~~~i~~l~~~~~i~~IvVvt~----~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al-~~~~~~~d~vlv~~gD~ 148 (277)
+-+++|+++...+.+...+.+.-++ .....+.....|...+++++-. .-.+|+..+. ..+. ....|+++--|.
T Consensus 37 r~lle~tl~~v~~~~~~~~a~l~~~d~d~~~dlq~m~~~Lg~~lvyqpqGd-d~gdRlars~~~a~~-~~~~VliIg~Dc 114 (211)
T COG3222 37 RQLLEDTLDAVAAAPVTARAVLLIGDLDSGGDLQEMRRWLGSFLVYQPQGD-DLGDRLARSHVDAFD-GSYPVLIIGMDC 114 (211)
T ss_pred HHHHHHHHHHHHhhhhhhcceeeeecccccccHHHHHHHhhhheeecccCC-CHHHHHHHHHHHHhc-CCCcEEEEecCC
Confidence 3589999999887655545444443 2334445555677777765432 1224554333 2333 236799999999
Q ss_pred ccCCHHHHHHHHHHHHcCCCcEEE
Q 023786 149 PLIEPEIIDGVVKALQAAPDAVFS 172 (277)
Q Consensus 149 P~i~~~~i~~li~~~~~~~~~~v~ 172 (277)
|-++.+.+..+...+.+. ++++.
T Consensus 115 P~lt~elLa~a~taL~~~-paVLG 137 (211)
T COG3222 115 PGLTAELLADAFTALLQI-PAVLG 137 (211)
T ss_pred CccCHHHHHHHHHHHhcC-cceec
Confidence 999999998888777553 44433
No 170
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=71.15 E-value=60 Score=29.58 Aligned_cols=90 Identities=6% Similarity=0.029 Sum_probs=53.1
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCchHHHHHHHHcCCeEEecCCcCC--Cc-HHHH
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCR--NG-TERC 127 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~--~g-~~~i 127 (277)
..|++.|.|+=| +-.+++..+-. .++-+.|+++.+...+.++++|+.+...+.... .. ...+
T Consensus 96 iavl~Sg~g~nl--------------~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~ 161 (289)
T PRK13010 96 VVIMVSKFDHCL--------------NDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPVTPDTKAQQEAQI 161 (289)
T ss_pred EEEEEeCCCccH--------------HHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCCCcccccchHHHH
Confidence 678888888732 44445444321 244455666777777888889998764321111 11 1234
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHHH
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~ 158 (277)
...++.. +.| ++++.|=+-.++++.++.
T Consensus 162 ~~~l~~~--~~D-livlagym~il~~~~l~~ 189 (289)
T PRK13010 162 LDLIETS--GAE-LVVLARYMQVLSDDLSRK 189 (289)
T ss_pred HHHHHHh--CCC-EEEEehhhhhCCHHHHhh
Confidence 5556655 356 667777777887765543
No 171
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=65.67 E-value=63 Score=27.67 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=47.2
Q ss_pred CCceEEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEE-EecCc--hHHHHHHHHcCCeEEec-CCcCCC
Q 023786 47 RSRVVGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLV-VATDD--EKIAECCQQFGADVIMT-SESCRN 122 (277)
Q Consensus 47 ~m~i~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~Iv-Vvt~~--~~i~~~~~~~g~~vi~~-~~~~~~ 122 (277)
||| .+|+|.|.|+ ++.-.++++.+....-+|+ |+++. ....+++++.|+.++.. +....+
T Consensus 1 m~k--i~vl~sg~gs--------------~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~~~~~~ 64 (200)
T PRK05647 1 MKR--IVVLASGNGS--------------NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDHKDFPS 64 (200)
T ss_pred Cce--EEEEEcCCCh--------------hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECccccCc
Confidence 455 6778887775 3344555554432112444 34553 34556778889887542 222211
Q ss_pred c---HHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHH
Q 023786 123 G---TERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (277)
Q Consensus 123 g---~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~ 157 (277)
. ...+...++.. +.|. +++.+=..+++++.++
T Consensus 65 ~~~~~~~~~~~l~~~--~~D~-iv~~~~~~ii~~~~l~ 99 (200)
T PRK05647 65 REAFDAALVEALDAY--QPDL-VVLAGFMRILGPTFVS 99 (200)
T ss_pred hhHhHHHHHHHHHHh--CcCE-EEhHHhhhhCCHHHHh
Confidence 1 11244445554 4574 4445555577765543
No 172
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=65.16 E-value=60 Score=32.05 Aligned_cols=90 Identities=13% Similarity=0.164 Sum_probs=48.5
Q ss_pred cccchHHHHHHHHh-ccC-CCCeEEEecC--ch----HHHHHHHHc-CCeEEecCCcCCCcHH-HHHHHHHHc------c
Q 023786 72 LGKPMIQRTWERSK-LAT-TLDHLVVATD--DE----KIAECCQQF-GADVIMTSESCRNGTE-RCNEALQKL------E 135 (277)
Q Consensus 72 ~GkpLi~~~i~~l~-~~~-~i~~IvVvt~--~~----~i~~~~~~~-g~~vi~~~~~~~~g~~-~i~~al~~~------~ 135 (277)
+....|+.+++.+. +.. .--+|+|+.+ ++ .+.+++.++ +++++..+..-+.+.. .+..+++.+ .
T Consensus 76 NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~ 155 (504)
T PRK14716 76 READVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERER 155 (504)
T ss_pred CchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhc
Confidence 44457788888643 321 1126777763 22 233334444 3444333222122232 354555443 1
Q ss_pred -cCCCEEEEEcCCcccCCHHHHHHHHHH
Q 023786 136 -KKYDIVVNIQGDEPLIEPEIIDGVVKA 162 (277)
Q Consensus 136 -~~~d~vlv~~gD~P~i~~~~i~~li~~ 162 (277)
.++|+++++|+|. .++|+.++.+...
T Consensus 156 G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 156 GIRFAIIVLHDAED-VIHPLELRLYNYL 182 (504)
T ss_pred CCCcCEEEEEcCCC-CcCccHHHHHHhh
Confidence 1358999999999 7888888765443
No 173
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=60.96 E-value=20 Score=31.83 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=74.8
Q ss_pred chHHHHHHHHhccCCCCeEEEecCch-HHH--HHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccC
Q 023786 75 PMIQRTWERSKLATTLDHLVVATDDE-KIA--ECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLI 151 (277)
Q Consensus 75 pLi~~~i~~l~~~~~i~~IvVvt~~~-~i~--~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i 151 (277)
..|...++.+.+++.+.+|+|+=+++ ..- ......++.+.+..+....-..+. .....+ +.+.|+.+|=|. .+
T Consensus 13 ~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF-~p~~~i--~T~AVl~~DDDv-~~ 88 (247)
T PF09258_consen 13 DLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRF-LPDPEI--ETDAVLSLDDDV-ML 88 (247)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGG-S--TT----SSEEEEEETTE-EE
T ss_pred HHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcC-cCcccc--CcceEEEecCCc-cc
Confidence 67888899998888899999987531 111 112223455533321110111121 111223 478999999997 77
Q ss_pred CHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeecCCcCCCCCCCCCCCCCceEEEEEEeec
Q 023786 152 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYD 231 (277)
Q Consensus 152 ~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~Giy~~~ 231 (277)
+.++++...+..++.++-+++...... .....++.-.|.++.. ..-...-+|..++.
T Consensus 89 ~~~~l~faF~~W~~~pdrlVGf~~R~h------------~~~~~~~~~~Y~~~~~-----------~~ySmvLt~aaf~h 145 (247)
T PF09258_consen 89 SCDELEFAFQVWREFPDRLVGFPPRSH------------SWDPSSGRWKYTSEWS-----------NEYSMVLTGAAFYH 145 (247)
T ss_dssp -HHHHHHHHHHHCCSTTSEEES-EEEE------------EEE-ETTEEEEE-SSS-------------BSEE-TTEEEEE
T ss_pred CHHHHHHHHHHHHhChhheeCCcccee------------ecCCCccccccccCCC-----------CcchhhhhhhHhhc
Confidence 899999999999887888888543211 1112333333332111 11234556778888
Q ss_pred HHHHhhccC
Q 023786 232 SNFLKIYPG 240 (277)
Q Consensus 232 ~~~l~~~~~ 240 (277)
+.++..|..
T Consensus 146 ~~yl~~Y~~ 154 (247)
T PF09258_consen 146 RYYLELYTH 154 (247)
T ss_dssp THHHHHHHT
T ss_pred chHHHHHhc
Confidence 899988864
No 174
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=59.41 E-value=1.1e+02 Score=27.62 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=51.5
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCchHHHHHHHHcCCeEEecCCcCCC--c-HHHH
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRN--G-TERC 127 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~--g-~~~i 127 (277)
..|++.|.|+= ++..+++...-. ..+-+.|+++.+....+++++|+.+...+..... . ...+
T Consensus 87 i~vl~Sg~g~n--------------l~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~ 152 (280)
T TIGR00655 87 VAILVSKEDHC--------------LGDLLWRWYSGELDAEIALVISNHEDLRSLVERFGIPFHYIPATKDNRVEHEKRQ 152 (280)
T ss_pred EEEEEcCCChh--------------HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEcCCCCcchhhhHHHH
Confidence 77888888873 344555554321 1344555667777777888889988654322111 1 1123
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHH
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~ 157 (277)
...++.. +.| ++++.|=+-.++++.++
T Consensus 153 ~~~l~~~--~~D-livlagym~il~~~~l~ 179 (280)
T TIGR00655 153 LELLKQY--QVD-LVVLAKYMQILSPDFVK 179 (280)
T ss_pred HHHHHHh--CCC-EEEEeCchhhCCHHHHh
Confidence 4445444 356 56777777777775554
No 175
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.16 E-value=1.2e+02 Score=26.56 Aligned_cols=82 Identities=15% Similarity=0.081 Sum_probs=49.8
Q ss_pred HHHHHHHhccCCCCeEEEecCc-----hHHHHHHHHcCCeEEecC-----CcCCCc----HHHHHHHHHHcccCCCEEEE
Q 023786 78 QRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMTS-----ESCRNG----TERCNEALQKLEKKYDIVVN 143 (277)
Q Consensus 78 ~~~i~~l~~~~~i~~IvVvt~~-----~~i~~~~~~~g~~vi~~~-----~~~~~g----~~~i~~al~~~~~~~d~vlv 143 (277)
.-+++.|... ++.+|.|.|.+ +.-.++++..|++++... ++.+-| -..+..|.+....+.|.+++
T Consensus 107 ~Avv~aL~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFi 185 (238)
T COG3473 107 TAVVEALNAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFI 185 (238)
T ss_pred HHHHHHHHhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCCeEEE
Confidence 3456667665 68899999974 334467778888875321 111111 11234455545557787666
Q ss_pred EcCCcccCCHHHHHHHHHH
Q 023786 144 IQGDEPLIEPEIIDGVVKA 162 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~ 162 (277)
. |.+ |.+.+.++++=+.
T Consensus 186 S-CTn-lRt~eii~~lE~~ 202 (238)
T COG3473 186 S-CTN-LRTFEIIEKLERD 202 (238)
T ss_pred E-eec-cccHHHHHHHHHH
Confidence 5 888 8888877776544
No 176
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=53.87 E-value=1.6e+02 Score=26.65 Aligned_cols=89 Identities=9% Similarity=0.101 Sum_probs=49.4
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCchHHHHHHHHcCCeEEecCCcCCC--c-HHHH
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCRN--G-TERC 127 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~--g-~~~i 127 (277)
.+|++.|.|+ -++..+++...-. ..+-+.|+++.+....+++++|+.+...+..... . ...+
T Consensus 92 i~vl~Sg~g~--------------nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~ 157 (286)
T PRK13011 92 VLIMVSKFDH--------------CLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPITPDTKPQQEAQV 157 (286)
T ss_pred EEEEEcCCcc--------------cHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeCCCcCchhhhHHHH
Confidence 7888888765 3345555554321 2333455566777777788889987543211111 1 1124
Q ss_pred HHHHHHcccCCCEEEEEcCCcccCCHHHHH
Q 023786 128 NEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (277)
Q Consensus 128 ~~al~~~~~~~d~vlv~~gD~P~i~~~~i~ 157 (277)
...++.. +.|. +++.+=+-.++++.++
T Consensus 158 ~~~l~~~--~~Dl-ivlagy~~il~~~~l~ 184 (286)
T PRK13011 158 LDVVEES--GAEL-VVLARYMQVLSPELCR 184 (286)
T ss_pred HHHHHHh--CcCE-EEEeChhhhCCHHHHh
Confidence 4455554 3564 5556666677775444
No 177
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=53.76 E-value=1.8e+02 Score=30.20 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=51.7
Q ss_pred cccchHHHHHHHHh---ccCCCCeEEEec--Cch----HHHHHHHHcC-CeEEecCCcCCCcHH-HHHHHHHHc------
Q 023786 72 LGKPMIQRTWERSK---LATTLDHLVVAT--DDE----KIAECCQQFG-ADVIMTSESCRNGTE-RCNEALQKL------ 134 (277)
Q Consensus 72 ~GkpLi~~~i~~l~---~~~~i~~IvVvt--~~~----~i~~~~~~~g-~~vi~~~~~~~~g~~-~i~~al~~~------ 134 (277)
+....+..+++++. +-+. -+|+|++ +++ .+.+++++++ +.++..+..-++|.. .+..+++.+
T Consensus 73 nE~~vi~~~i~~ll~~ldYP~-~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~ 151 (727)
T PRK11234 73 NETGVIGNMAELAATTLDYEN-YHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERS 151 (727)
T ss_pred cchhhHHHHHHHHHHhCCCCC-eEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcc
Confidence 33456777777653 3334 3777775 332 2334445554 444443332233443 356666655
Q ss_pred -ccCCCEEEEEcCCcccCCHHHHHHHHHHHHc
Q 023786 135 -EKKYDIVVNIQGDEPLIEPEIIDGVVKALQA 165 (277)
Q Consensus 135 -~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~ 165 (277)
..+++.++++|+|. .++|+.++ +++.+.+
T Consensus 152 ~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~~ 181 (727)
T PRK11234 152 ANFAFAGFILHDAED-VISPMELR-LFNYLVE 181 (727)
T ss_pred cCCcccEEEEEcCCC-CCChhHHH-HHHhhcC
Confidence 12457789999999 88998887 5555543
No 178
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=53.42 E-value=44 Score=27.77 Aligned_cols=126 Identities=14% Similarity=0.189 Sum_probs=66.1
Q ss_pred HHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCCcEEEEEeeecCCCCCCCCCceEEEECCCceEEeeecC
Q 023786 126 RCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRG 205 (277)
Q Consensus 126 ~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~v~~~~~g~~~~f~~~ 205 (277)
.+..+++. ..++|+++++|+|. .++++.++.++..+.+..-..++. .+.. .+++...-.. +.... .|...
T Consensus 21 nL~~~~~~-~a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~p~vglVt~--~~~~----~~~~~~~~~l-~~~~~-~~~~~ 90 (175)
T PF13506_consen 21 NLAQGLEA-GAKYDYLVISDSDI-RVPPDYLRELVAPLADPGVGLVTG--LPRG----VPARGFWSRL-EAAFF-NFLPG 90 (175)
T ss_pred HHHHHHHh-hCCCCEEEEECCCe-eECHHHHHHHHHHHhCCCCcEEEe--cccc----cCCcCHHHHH-HHHHH-hHHHH
Confidence 46667776 22689999999999 889999999999887622223331 1110 0111000000 00000 00000
Q ss_pred CcCCCCCCCCCCCCCceEEEEEEeecHHHHhhccCCCCCCCccccChHHH-HHHHcCCeeEEEE
Q 023786 206 LIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQL-KVLENGYKMKVQQ 268 (277)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~s~~~~~d~l~~l-~~le~g~~v~~~~ 268 (277)
.... -........+.++++++.|+.+.....-.-+.-||...- .+-+.|+++....
T Consensus 91 ~~~a-------~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 91 VLQA-------LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHHH-------hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0000 012356788899999999998753332222333444432 3557778765443
No 179
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=48.59 E-value=83 Score=26.53 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=39.9
Q ss_pred CCeEEEecCchHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 90 LDHLVVATDDEKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 90 i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
+++|+||-+.++...+-+-+++.++.+.... -.. ....-++.+....+.++++|+|.|= +-|++.+...
T Consensus 2 IkevIVVEGK~D~~~lk~~~d~~~I~T~Gs~-i~~-~~i~~i~~~~~~rgVIIfTDpD~~G---ekIRk~i~~~ 70 (174)
T TIGR00334 2 IKEIIVVEGKDDQARIKQAFDVDVIETNGSA-LKD-ETINLIKKAQKKQGVIILTDPDFPG---EKIRKKIEQH 70 (174)
T ss_pred CCeEEEEecchHHHHHHHhcCceEEEECCCc-cCH-HHHHHHHHHhhcCCEEEEeCCCCch---HHHHHHHHHH
Confidence 6789999876555555444567777653221 111 1222222222246889999999754 5677776654
No 180
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=46.86 E-value=1.8e+02 Score=25.42 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=62.8
Q ss_pred EEEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEEEecCc-hHHHHHHHH---cCCeEEec-CCcCCCcHH
Q 023786 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLVVATDD-EKIAECCQQ---FGADVIMT-SESCRNGTE 125 (277)
Q Consensus 51 ~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt~~-~~i~~~~~~---~g~~vi~~-~~~~~~g~~ 125 (277)
..++++.|.-..|..+.. -+.-..+|...+.++.. + .++-|++.. +++....++ ++..+.+. -.++.++.+
T Consensus 90 ~illlCTG~F~~l~~~~~-lleP~ril~~lV~al~~--~-~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~asPy~~~~~ 165 (221)
T PF07302_consen 90 VILLLCTGEFPGLTARNP-LLEPDRILPPLVAALVG--G-HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAASPYEGDEE 165 (221)
T ss_pred EEEEeccCCCCCCCCCcc-eeehHHhHHHHHHHhcC--C-CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 367778888777764443 45556799999998864 3 688888874 444434443 33333221 123435555
Q ss_pred HHHHHHHHcc-cCCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 126 RCNEALQKLE-KKYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 126 ~i~~al~~~~-~~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
.+..|.+.+. .+.| ++++||=- | + +..+++++..
T Consensus 166 ~l~~Aa~~L~~~gad-lIvLDCmG-Y-t-~~~r~~~~~~ 200 (221)
T PF07302_consen 166 ELAAAARELAEQGAD-LIVLDCMG-Y-T-QEMRDIVQRA 200 (221)
T ss_pred HHHHHHHHHHhcCCC-EEEEECCC-C-C-HHHHHHHHHH
Confidence 6666666654 2455 78899876 4 3 3456665544
No 181
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=46.57 E-value=1.1e+02 Score=25.03 Aligned_cols=24 Identities=25% Similarity=0.542 Sum_probs=21.0
Q ss_pred EEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 140 IVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 140 ~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
+|+++|+|. .++++.++++++.+.
T Consensus 1 ~v~~~DaDt-~~~~d~l~~~~~~~~ 24 (193)
T PF13632_consen 1 YVLFLDADT-RLPPDFLERLVAALE 24 (193)
T ss_pred CEEEEcCCC-CCChHHHHHHHHHHh
Confidence 478999999 678999999999887
No 182
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.69 E-value=2.3e+02 Score=24.97 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=50.2
Q ss_pred hHHHHHHHHhccCCCCeEEEecCc-----hHHHHHHHHcCCeEEecC-CcCCC-------cHHHHHHHHHHc-ccCCCEE
Q 023786 76 MIQRTWERSKLATTLDHLVVATDD-----EKIAECCQQFGADVIMTS-ESCRN-------GTERCNEALQKL-EKKYDIV 141 (277)
Q Consensus 76 Li~~~i~~l~~~~~i~~IvVvt~~-----~~i~~~~~~~g~~vi~~~-~~~~~-------g~~~i~~al~~~-~~~~d~v 141 (277)
-..-.++++... ++.+|.|+|.+ +.+.+++++.|+++.... -.... ....+..++..+ .++.|.+
T Consensus 107 ~~~A~~~AL~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAi 185 (239)
T TIGR02990 107 PSSAAVDGLAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADAL 185 (239)
T ss_pred HHHHHHHHHHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEE
Confidence 345566677766 79999999985 445566677788875321 11111 123455555444 3457765
Q ss_pred EEEcCCcccCCHHHHHHHHHHH
Q 023786 142 VNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 142 lv~~gD~P~i~~~~i~~li~~~ 163 (277)
++ .|+. +.+.+.++++=+.+
T Consensus 186 fi-sCTn-Lrt~~vi~~lE~~l 205 (239)
T TIGR02990 186 FL-SCTA-LRAATCAQRIEQAI 205 (239)
T ss_pred EE-eCCC-chhHHHHHHHHHHH
Confidence 55 4777 66676666664443
No 183
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=40.71 E-value=2.8e+02 Score=25.96 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=51.7
Q ss_pred chHHHHHHHHhccCCCCeEEEecC-chHHHHHHHHcCCeEEecCCc-CCCcHHHHHHHHHHcccCCCEEEEEcCCcc---
Q 023786 75 PMIQRTWERSKLATTLDHLVVATD-DEKIAECCQQFGADVIMTSES-CRNGTERCNEALQKLEKKYDIVVNIQGDEP--- 149 (277)
Q Consensus 75 pLi~~~i~~l~~~~~i~~IvVvt~-~~~i~~~~~~~g~~vi~~~~~-~~~g~~~i~~al~~~~~~~d~vlv~~gD~P--- 149 (277)
.+|+..++.+..- + |.|++... ..+....++..|.+++..+.. .....+.+..++. ++.+.+++.+...|
T Consensus 86 e~i~~l~~~~~~~-g-d~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~ 160 (356)
T COG0079 86 ELIELLVRAFVEP-G-DTVLIPEPTFSMYEIAAQLAGAEVVKVPLKEFRLDLDAILAAIR---DKTKLVFLCNPNNPTGT 160 (356)
T ss_pred HHHHHHHHHhhcC-C-CEEEEcCCChHHHHHHHHhcCCeEEEecccccccCHHHHHHhhh---cCCCEEEEeCCCCCCCC
Confidence 4777777777653 3 66666654 345555566677776544321 2222233333333 24678889888877
Q ss_pred cCCHHHHHHHHHHHHc
Q 023786 150 LIEPEIIDGVVKALQA 165 (277)
Q Consensus 150 ~i~~~~i~~li~~~~~ 165 (277)
+++.++++++++....
T Consensus 161 ~~~~~~l~~l~~~~~~ 176 (356)
T COG0079 161 LLPREELRALLEALPE 176 (356)
T ss_pred CCCHHHHHHHHHhCCC
Confidence 5788888888876543
No 184
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=40.60 E-value=1.1e+02 Score=27.88 Aligned_cols=11 Identities=9% Similarity=-0.188 Sum_probs=7.4
Q ss_pred EEEEecCCCCc
Q 023786 51 VGIIPARFASS 61 (277)
Q Consensus 51 ~aIIlAaG~ss 61 (277)
.++|+.+|-|.
T Consensus 79 ~VLiiGgGdG~ 89 (282)
T COG0421 79 RVLIIGGGDGG 89 (282)
T ss_pred eEEEECCCccH
Confidence 47777777774
No 185
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=39.99 E-value=1.3e+02 Score=25.88 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
+..+....|++.. +.++++.+.-|.=+.++..+..+++.+++.++
T Consensus 41 s~~~~yN~a~~~a--~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 41 SMAAAYNEAMEKA--KAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp -TTTHHHHHGGG----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHhC--CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 3333445566654 56899999999988889889999999955444
No 186
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=36.68 E-value=91 Score=31.33 Aligned_cols=97 Identities=18% Similarity=0.326 Sum_probs=55.2
Q ss_pred cccc---cccccccc----ccchHHHHHHHHhcc-------CCCCeEEEecCchHHHHHHHH--cCCeE-EecCCc-CCC
Q 023786 61 SRFE---GKPLVNIL----GKPMIQRTWERSKLA-------TTLDHLVVATDDEKIAECCQQ--FGADV-IMTSES-CRN 122 (277)
Q Consensus 61 sRl~---~K~l~~i~----GkpLi~~~i~~l~~~-------~~i~~IvVvt~~~~i~~~~~~--~g~~v-i~~~~~-~~~ 122 (277)
+|++ ||-.+-++ ||+||.+.+.-=..+ ..||+++|-++...+.+.+.. ....+ ++-++- .-|
T Consensus 330 trLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG 409 (752)
T KOG0734|consen 330 TRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVG 409 (752)
T ss_pred hhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhc
Confidence 5554 45555553 899999988743322 258999999998888777532 23333 232222 223
Q ss_pred cHH---HH---HHHHHH----cc--cCCCEEEEEcCCcccCCHHHHHHHH
Q 023786 123 GTE---RC---NEALQK----LE--KKYDIVVNIQGDEPLIEPEIIDGVV 160 (277)
Q Consensus 123 g~~---~i---~~al~~----~~--~~~d~vlv~~gD~P~i~~~~i~~li 160 (277)
+.. .. ..-+++ ++ ..++.++++-++. | |++++..+
T Consensus 410 ~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN-f--pe~LD~AL 456 (752)
T KOG0734|consen 410 GKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN-F--PEALDKAL 456 (752)
T ss_pred ccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC-C--hhhhhHHh
Confidence 321 11 122222 22 2467788888887 5 67777655
No 187
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=36.27 E-value=1.3e+02 Score=27.88 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=23.2
Q ss_pred CCCCCCCceEEE--EecCCCCccccccccccccccchHHHHHHHHhcc
Q 023786 42 RSKNFRSRVVGI--IPARFASSRFEGKPLVNILGKPMIQRTWERSKLA 87 (277)
Q Consensus 42 ~~~~~~m~i~aI--IlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~ 87 (277)
++....-.+..| |-+||.|+ .|++.|.++.+.+.
T Consensus 43 ~~~~~~~pvIsVGNi~vGGtGK------------TP~v~~L~~~l~~~ 78 (325)
T PRK00652 43 KPYRAPVPVIVVGNITVGGTGK------------TPVVIALAEQLQAR 78 (325)
T ss_pred cccCCCCCEEEEcCeeCCCCCh------------HHHHHHHHHHHHHC
Confidence 344444456666 77888886 48888888888764
No 188
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=35.49 E-value=3.4e+02 Score=24.56 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=52.0
Q ss_pred EEEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCchHHHHHHHHcCCeEEecCCcCC--Cc-HHH
Q 023786 51 VGIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDDEKIAECCQQFGADVIMTSESCR--NG-TER 126 (277)
Q Consensus 51 ~aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~--~g-~~~ 126 (277)
..+|++.|.||= ++..+++...-. ..+-+.|+++.+....+++++|+.++..+.... .. ...
T Consensus 91 ri~vl~Sg~gsn--------------l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~ 156 (286)
T PRK06027 91 RVVILVSKEDHC--------------LGDLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPVTKETKAEAEAR 156 (286)
T ss_pred EEEEEEcCCCCC--------------HHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEeccCccccchhHHH
Confidence 367788888763 345555554321 234455566777777788888998765322111 11 122
Q ss_pred HHHHHHHcccCCCEEEEEcCCcccCCHHHHHH
Q 023786 127 CNEALQKLEKKYDIVVNIQGDEPLIEPEIIDG 158 (277)
Q Consensus 127 i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~ 158 (277)
+...++.. +.| ++++-|=+-.++++.++.
T Consensus 157 ~~~~l~~~--~~D-livlagy~~il~~~~l~~ 185 (286)
T PRK06027 157 LLELIDEY--QPD-LVVLARYMQILSPDFVAR 185 (286)
T ss_pred HHHHHHHh--CCC-EEEEecchhhcCHHHHhh
Confidence 44555555 356 566677666777765543
No 189
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.35 E-value=1.3e+02 Score=22.10 Aligned_cols=41 Identities=24% Similarity=0.444 Sum_probs=27.1
Q ss_pred CCeEEEecCc------hHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHH
Q 023786 90 LDHLVVATDD------EKIAECCQQFGADVIMTSESCRNGTERCNEALQK 133 (277)
Q Consensus 90 i~~IvVvt~~------~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~ 133 (277)
.|-||+.|+. ..+.+.+++++.++++.. ..+..++..+++.
T Consensus 49 aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~---~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 49 ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR---SRGVSSLERALER 95 (97)
T ss_pred CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC---CCCHHHHHHHHHh
Confidence 5778888872 455667788888887752 2455566666654
No 190
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=34.09 E-value=2.9e+02 Score=23.32 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=54.5
Q ss_pred eEEEecCchHH-----HHHHHHcCCeEEecCCcCCCcH--HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 92 HLVVATDDEKI-----AECCQQFGADVIMTSESCRNGT--ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 92 ~IvVvt~~~~i-----~~~~~~~g~~vi~~~~~~~~g~--~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
+|+++|+.+++ +..+++.|.+++-.+.--+... .-+...++.. ..|+|+++-=|.=+.-...=+..+....
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~Al~~v~ 78 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQALEYVA 78 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHHHHHHH
Confidence 47888975433 3345678999885432222211 1234444444 3688999988887765544455555554
Q ss_pred cCCCc-EEE-EEeeecCCCCCCCCCceE--EEECCCceEEe
Q 023786 165 AAPDA-VFS-TAVTSLKPEDAFDPNRVK--CVVDNHGYAIY 201 (277)
Q Consensus 165 ~~~~~-~v~-~~~~~~~~~~~~d~~~~~--v~~~~~g~~~~ 201 (277)
.+++- ++. +.+... +...++.+ +-.|.+|+++.
T Consensus 79 ~h~~IeVLG~iAVASn----T~~~~g~~VD~sidr~G~~v~ 115 (180)
T PF14097_consen 79 NHPDIEVLGAIAVASN----THGAEGTKVDVSIDRDGEIVE 115 (180)
T ss_pred cCCCceEEEEEEEEec----CCCCCceEeEEEEcCCCeEee
Confidence 44332 122 112221 12223333 34688888864
No 191
>PF08832 SRC-1: Steroid receptor coactivator; InterPro: IPR014935 This domain is found in steroid/nuclear receptor coactivators and contains two LXXLL motifs that are involved in receptor binding [] and includes SRC-1/NcoA-1, NcoA-2/TIF2, pCIP/ACTR/GRIP-1/AIB1. ; PDB: 4DMA_F 2O9I_D 2QXM_D 2QGT_D 2QA8_D 2QSE_C 2QA6_D 2QAB_D 2QR9_D 1WM0_Y ....
Probab=33.44 E-value=26 Score=25.44 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=12.7
Q ss_pred CCCCCCCCCCCCCCchhHHHHHHhhcc
Q 023786 2 SSKSICSPSESSSSTKSWIVHGIVAGA 28 (277)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (277)
++.++|..+.++--.|-=|+||||.|-
T Consensus 40 s~~~~~~ss~sSL~EKHKILHrLLQng 66 (78)
T PF08832_consen 40 SSSSGCPSSHSSLQEKHKILHRLLQNG 66 (78)
T ss_dssp ------------CCCCTHHHHHHHHCS
T ss_pred CCCCCCcCCcccHHHHHHHHHHHHhcC
Confidence 456777777777777889999999874
No 192
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=29.63 E-value=6.4e+02 Score=26.15 Aligned_cols=94 Identities=12% Similarity=0.079 Sum_probs=51.3
Q ss_pred cccchHHHHHHHHh---ccCCCCeEEEec--CchHHHH----HHHHc-CCeEEecCCcCCCcHH-HHHHHHHHc------
Q 023786 72 LGKPMIQRTWERSK---LATTLDHLVVAT--DDEKIAE----CCQQF-GADVIMTSESCRNGTE-RCNEALQKL------ 134 (277)
Q Consensus 72 ~GkpLi~~~i~~l~---~~~~i~~IvVvt--~~~~i~~----~~~~~-g~~vi~~~~~~~~g~~-~i~~al~~~------ 134 (277)
+..-.|..+++++. +-+. -+|+|++ |+.+-.+ ....+ .++++..+..-+.+.. .+..+++.+
T Consensus 81 nE~~VI~~~v~~ll~~ldYp~-~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~ 159 (703)
T PRK15489 81 KEYDVIAKMIENMLATLDYRR-YVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAG 159 (703)
T ss_pred CcHHHHHHHHHHHHhcCCCCC-eEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 33457788888753 2333 3677755 4433222 22233 2445544444334443 355566553
Q ss_pred -ccCCCEEEEEcCCcccCCHHHHHHHHHHHHcCCC
Q 023786 135 -EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPD 168 (277)
Q Consensus 135 -~~~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~ 168 (277)
...++.++++|+|. .++|..+..+ +.+..+.+
T Consensus 160 ~~~~fa~vvi~DAEd-~~~P~~L~~~-~~~~~~~~ 192 (703)
T PRK15489 160 HGIEFAGVILHDSED-VLHPLELKYF-NYLLPRKD 192 (703)
T ss_pred ccCccceEEEEcCCC-CCChhHHHHH-HhhcCCcc
Confidence 11345689999999 8889888655 54443334
No 193
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.99 E-value=38 Score=24.21 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCCCchhHHHHHHhhccchhhhcccee
Q 023786 12 SSSSTKSWIVHGIVAGAAIAVAVGARA 38 (277)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (277)
+.+|.+|=+-|++.-|.++.+|+|+++
T Consensus 3 ~qpSc~dKikmG~~mG~avG~a~G~lf 29 (75)
T KOG4096|consen 3 QQPSCFDKIKMGLMMGGAVGGATGALF 29 (75)
T ss_pred CCccHHHHHHHHHHHHhhhhhhhhhhc
Confidence 456779999999999999999999875
No 194
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.54 E-value=4e+02 Score=23.23 Aligned_cols=101 Identities=6% Similarity=0.057 Sum_probs=57.6
Q ss_pred ecCCCCcccc---ccccccccccchHHHHHHHHhccCCCCeEEEec-C-----c----hHHHHHHHHcCCeEEecCCcCC
Q 023786 55 PARFASSRFE---GKPLVNILGKPMIQRTWERSKLATTLDHLVVAT-D-----D----EKIAECCQQFGADVIMTSESCR 121 (277)
Q Consensus 55 lAaG~ssRl~---~K~l~~i~GkpLi~~~i~~l~~~~~i~~IvVvt-~-----~----~~i~~~~~~~g~~vi~~~~~~~ 121 (277)
+-.|+-=|+. .....++.+-|+= ..+.+.+..++++++|+= + . +.|.++++..+.++.. -
T Consensus 10 l~~G~~Vr~~~G~~~~~~~~~~dp~~--~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~v-----G 82 (234)
T PRK13587 10 LIGSTSVRLTEGKYDSEEKMSRSAEE--SIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEV-----G 82 (234)
T ss_pred ccCCEEEEcCcccCCCceEeCCCHHH--HHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEE-----c
Confidence 3466666662 2334455555532 556666533689988863 1 1 3444555544455433 3
Q ss_pred CcHHHHHHHHHHcccCCCEEEEEcCCcccCCHHHHHHHHHHHH
Q 023786 122 NGTERCNEALQKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 122 ~g~~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 164 (277)
||..++..+-+.+....+.+++ +...+-+++.++++.+.|.
T Consensus 83 GGIrs~e~v~~~l~~Ga~kvvi--gt~a~~~~~~l~~~~~~fg 123 (234)
T PRK13587 83 GGIRTKSQIMDYFAAGINYCIV--GTKGIQDTDWLKEMAHTFP 123 (234)
T ss_pred CCcCCHHHHHHHHHCCCCEEEE--CchHhcCHHHHHHHHHHcC
Confidence 5655555554444323565533 6766788999999988773
No 195
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=27.01 E-value=1.3e+02 Score=24.77 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=29.1
Q ss_pred hHHHHHHHHhccCCCCeEEEecCchHHHHHHHHcCCeEEe
Q 023786 76 MIQRTWERSKLATTLDHLVVATDDEKIAECCQQFGADVIM 115 (277)
Q Consensus 76 Li~~~i~~l~~~~~i~~IvVvt~~~~i~~~~~~~g~~vi~ 115 (277)
+|+..+..+... -.+|.|||++..+...+...|+.++-
T Consensus 82 ~Ie~~v~~~~~~--~~~v~VVTSD~~iq~~~~~~GA~~is 119 (166)
T PF05991_consen 82 YIERLVRELKNR--PRQVTVVTSDREIQRAARGRGAKRIS 119 (166)
T ss_pred HHHHHHHHhccC--CCeEEEEeCCHHHHHHHhhCCCEEEc
Confidence 677777666543 26999999998998888888887653
No 196
>TIGR03065 srtB_sig_QVPTGV sortase B signal domain, QVPTGV class. This model represents a boutique (unusual) sorting signal, recognized by a member of the sortase SrtB family rather than by the housekeeping sortase, SrtA.
Probab=26.76 E-value=23 Score=20.69 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.0
Q ss_pred hhccceecccCCC
Q 023786 32 VAVGARAYLGRSK 44 (277)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (277)
|++||.+|+-+++
T Consensus 19 va~gg~~y~tk~k 31 (32)
T TIGR03065 19 VAIGGAIYFTKKK 31 (32)
T ss_pred EEeccEEEEEEcc
Confidence 7899999965544
No 197
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=26.42 E-value=2.4e+02 Score=20.08 Aligned_cols=47 Identities=34% Similarity=0.477 Sum_probs=31.4
Q ss_pred hHHHHHHHHcCCeEEecCCcCCCcHHHHHHHHHHcccCCCEEEEEcCCcc
Q 023786 100 EKIAECCQQFGADVIMTSESCRNGTERCNEALQKLEKKYDIVVNIQGDEP 149 (277)
Q Consensus 100 ~~i~~~~~~~g~~vi~~~~~~~~g~~~i~~al~~~~~~~d~vlv~~gD~P 149 (277)
+-+..+++.+|+..+.-+ ...+|...+...++.+++ ..-+.+..|=|
T Consensus 23 e~ia~~~~~~G~~~iRGS-s~rgg~~Alr~~~~~lk~--G~~~~itpDGP 69 (74)
T PF04028_consen 23 ELIARVLERFGFRTIRGS-SSRGGARALREMLRALKE--GYSIAITPDGP 69 (74)
T ss_pred HHHHHHHHHcCCCeEEeC-CCCcHHHHHHHHHHHHHC--CCeEEEeCCCC
Confidence 556667788999887654 445777777777887753 33455566655
No 198
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=26.39 E-value=17 Score=22.43 Aligned_cols=29 Identities=24% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHhhccchh--hhccceecccCCCCCCCc
Q 023786 21 VHGIVAGAAIA--VAVGARAYLGRSKNFRSR 49 (277)
Q Consensus 21 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~m~ 49 (277)
+-|||-|+--. .|+...+|+|++|++...
T Consensus 6 L~GiVlGli~vtl~Glfv~Ay~QY~Rg~ql~ 36 (37)
T PF02529_consen 6 LSGIVLGLIPVTLAGLFVAAYLQYRRGNQLG 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCS--TTT
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhcccccC
Confidence 45566555322 566777899999987653
No 199
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=24.74 E-value=4.1e+02 Score=26.64 Aligned_cols=120 Identities=15% Similarity=0.246 Sum_probs=65.6
Q ss_pred ccCCCCCCCceEEEEecCCCCcccc---------ccccccc-cccchHHHHHHHHhccCCCCeEEEecC-----ch----
Q 023786 40 LGRSKNFRSRVVGIIPARFASSRFE---------GKPLVNI-LGKPMIQRTWERSKLATTLDHLVVATD-----DE---- 100 (277)
Q Consensus 40 ~~~~~~~~m~i~aIIlAaG~ssRl~---------~K~l~~i-~GkpLi~~~i~~l~~~~~i~~IvVvt~-----~~---- 100 (277)
|+-+..-...-.+||.|.=++-++. ..++-++ .|-.=|++.++.+++. ++ .++|+.+ .+
T Consensus 314 Ikcr~~gl~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL~RHIenvr~F-Gv-PvVVAINKFd~DTe~Ei~ 391 (557)
T PRK13505 314 IKCRKAGLKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANLERHIENIRKF-GV-PVVVAINKFVTDTDAEIA 391 (557)
T ss_pred eecccCCCCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHHHHHHHHHHHc-CC-CEEEEEeCCCCCCHHHHH
Confidence 4433333223356666644444442 2233333 4677789999999876 45 4555553 12
Q ss_pred HHHHHHHHcCCeEEecCCcCCCcHHHHHH--H-HHHccc-CCCEEEEEcCCcccCCHHHHHHHHHHH
Q 023786 101 KIAECCQQFGADVIMTSESCRNGTERCNE--A-LQKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKAL 163 (277)
Q Consensus 101 ~i~~~~~~~g~~vi~~~~~~~~g~~~i~~--a-l~~~~~-~~d~vlv~~gD~P~i~~~~i~~li~~~ 163 (277)
.|+++|++.|+.+........||...+-. + ++.+.. ..++-++.+-+.|+ .+-|+.+.+..
T Consensus 392 ~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s~f~~lY~~d~sl--~eKIe~IAkkI 456 (557)
T PRK13505 392 ALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGESNFKPLYDDEDSL--EEKIEKIATKI 456 (557)
T ss_pred HHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCCCCceecCCCCcH--HHHHHHHHHHc
Confidence 35677888899887766666676544322 1 222221 22333455666666 55677776654
No 200
>PF13684 Dak1_2: Dihydroxyacetone kinase family
Probab=23.99 E-value=2.6e+02 Score=25.67 Aligned_cols=55 Identities=25% Similarity=0.376 Sum_probs=34.9
Q ss_pred eEEEecCchHHHHHHHHcCCeEEecCCcCCCc-HHHHHHHHHHcccCCCEEEEEcCCc
Q 023786 92 HLVVATDDEKIAECCQQFGADVIMTSESCRNG-TERCNEALQKLEKKYDIVVNIQGDE 148 (277)
Q Consensus 92 ~IvVvt~~~~i~~~~~~~g~~vi~~~~~~~~g-~~~i~~al~~~~~~~d~vlv~~gD~ 148 (277)
.|+.++..+.+.++++..|+..+........+ +..+..|++.. .++.|++++.+.
T Consensus 98 ~vVAv~~g~g~~~lf~~~Gv~~vi~ggqt~nPS~~dl~~Ai~~~--~a~~VivLPNn~ 153 (313)
T PF13684_consen 98 GVVAVAPGEGLAELFRSLGVDVVISGGQTMNPSTEDLLNAIEKV--GADEVIVLPNNK 153 (313)
T ss_pred EEEEEecCccHHHHHHhCCCeEEEeCCCCCCCCHHHHHHHHHhC--CCCeEEEEeCCc
Confidence 34445566777888888897765543222222 23467777776 467788888776
No 201
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=23.44 E-value=63 Score=18.80 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=6.1
Q ss_pred hhccceecccCCC
Q 023786 32 VAVGARAYLGRSK 44 (277)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (277)
++.++.++.+|++
T Consensus 21 ~~~~~~~~~~rk~ 33 (34)
T TIGR01167 21 LGLGGLLLRKRKK 33 (34)
T ss_pred HHHHHHHheeccc
Confidence 3445555455543
No 202
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=21.91 E-value=1.4e+02 Score=31.99 Aligned_cols=33 Identities=24% Similarity=0.209 Sum_probs=24.5
Q ss_pred EEEEecCCCCcccc-----cccccccc------ccchHHHHHHH
Q 023786 51 VGIIPARFASSRFE-----GKPLVNIL------GKPMIQRTWER 83 (277)
Q Consensus 51 ~aIIlAaG~ssRl~-----~K~l~~i~------GkpLi~~~i~~ 83 (277)
..+|=|||.|+|+| +|.+.|+= |.+|-++.++.
T Consensus 94 ~lllHaGG~S~RlP~~s~~GK~f~p~P~~~~~~g~~l~~~~l~~ 137 (974)
T PRK13412 94 RILLHAGGQSRRLPGYAPSGKILTPVPVFRWERGQRLSQNLLSL 137 (974)
T ss_pred EEEEecCCccccCccccccccccccCCccccCCCChhHHHHHHH
Confidence 36677999999998 59997763 77766655553
No 203
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.42 E-value=5.3e+02 Score=22.16 Aligned_cols=89 Identities=20% Similarity=0.170 Sum_probs=46.3
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccC-CCCeEEEecCc--hHHHHHHHHcCCeEEecCCc-CC---CcH
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLAT-TLDHLVVATDD--EKIAECCQQFGADVIMTSES-CR---NGT 124 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~-~i~~IvVvt~~--~~i~~~~~~~g~~vi~~~~~-~~---~g~ 124 (277)
.+|||.|.||=| +-.++++.+-. ..+-++|+++. -...+.++++|+.++..+.. .. ...
T Consensus 2 i~vl~Sg~Gsn~--------------~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~ 67 (207)
T PLN02331 2 LAVFVSGGGSNF--------------RAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSP 67 (207)
T ss_pred EEEEEeCCChhH--------------HHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccch
Confidence 467888888733 34555554421 13344555553 34456778889887542221 10 012
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHH
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~ 157 (277)
..+...++.. +.|. +++.+=+-+++++.++
T Consensus 68 ~~~~~~l~~~--~~Dl-iv~agy~~il~~~~l~ 97 (207)
T PLN02331 68 DELVDALRGA--GVDF-VLLAGYLKLIPVELVR 97 (207)
T ss_pred HHHHHHHHhc--CCCE-EEEeCcchhCCHHHHh
Confidence 2344455555 4564 5555555577765444
No 204
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=20.53 E-value=5.7e+02 Score=24.38 Aligned_cols=83 Identities=20% Similarity=0.258 Sum_probs=42.4
Q ss_pred HHHHHHHHhccCCCCeEEEecCc----hHHHHHHHHcCCe-E--EecCCcCCC----cHHHHHHHHHHc-c-cCCCEEEE
Q 023786 77 IQRTWERSKLATTLDHLVVATDD----EKIAECCQQFGAD-V--IMTSESCRN----GTERCNEALQKL-E-KKYDIVVN 143 (277)
Q Consensus 77 i~~~i~~l~~~~~i~~IvVvt~~----~~i~~~~~~~g~~-v--i~~~~~~~~----g~~~i~~al~~~-~-~~~d~vlv 143 (277)
+.-++.++.+.+.++.++++|+. +....+.+.+++. - ........+ -++++..+++.+ . ...| +++
T Consensus 19 mapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~~~~vl~~~kPD-~Vl 97 (383)
T COG0381 19 MAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEGLSKVLEEEKPD-LVL 97 (383)
T ss_pred HhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHHHHHHHHhhCCC-EEE
Confidence 34456677777679999999973 3333444555544 1 111111011 123344555443 1 2456 667
Q ss_pred EcCCcccCCHHHHHHHHHHHH
Q 023786 144 IQGDEPLIEPEIIDGVVKALQ 164 (277)
Q Consensus 144 ~~gD~P~i~~~~i~~li~~~~ 164 (277)
+.||+ ...+...+.++.
T Consensus 98 VhGDT----~t~lA~alaa~~ 114 (383)
T COG0381 98 VHGDT----NTTLAGALAAFY 114 (383)
T ss_pred EeCCc----chHHHHHHHHHH
Confidence 78997 334554444443
No 205
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.49 E-value=5.2e+02 Score=21.76 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=44.6
Q ss_pred EEEecCCCCccccccccccccccchHHHHHHHHhccCCCCeEE-EecCc--hHHHHHHHHcCCeEEe-cCCcCCCc---H
Q 023786 52 GIIPARFASSRFEGKPLVNILGKPMIQRTWERSKLATTLDHLV-VATDD--EKIAECCQQFGADVIM-TSESCRNG---T 124 (277)
Q Consensus 52 aIIlAaG~ssRl~~K~l~~i~GkpLi~~~i~~l~~~~~i~~Iv-Vvt~~--~~i~~~~~~~g~~vi~-~~~~~~~g---~ 124 (277)
..|+|.|.|+ +++-+++++.+...--+|. |+++. -...+.+++.|++++. .+...... .
T Consensus 3 iail~sg~gs--------------~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~ 68 (190)
T TIGR00639 3 IVVLISGNGS--------------NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFD 68 (190)
T ss_pred EEEEEcCCCh--------------hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhh
Confidence 5667777775 4445555555432112344 34553 3334667788988753 22222111 1
Q ss_pred HHHHHHHHHcccCCCEEEEEcCCcccCCHHHHH
Q 023786 125 ERCNEALQKLEKKYDIVVNIQGDEPLIEPEIID 157 (277)
Q Consensus 125 ~~i~~al~~~~~~~d~vlv~~gD~P~i~~~~i~ 157 (277)
..+...++.. ..|.+ ++-+=+.+++++.++
T Consensus 69 ~~~~~~l~~~--~~D~i-v~~~~~~il~~~~l~ 98 (190)
T TIGR00639 69 QAIIEELRAH--EVDLV-VLAGFMRILGPTFLS 98 (190)
T ss_pred HHHHHHHHhc--CCCEE-EEeCcchhCCHHHHh
Confidence 2344555554 45754 444444477765544
Done!